Query 014470
Match_columns 424
No_of_seqs 305 out of 1587
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 4E-112 1E-116 860.1 38.9 373 16-388 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 2E-110 7E-115 843.9 38.2 367 15-381 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 2E-107 5E-112 826.8 32.9 370 13-385 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 6.9E-91 2.4E-95 706.5 29.1 320 17-339 2-325 (375)
5 1zz1_A Histone deacetylase-lik 100.0 1.7E-88 6E-93 687.6 31.4 315 17-343 1-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 3.8E-88 1.3E-92 694.4 25.2 365 14-394 5-400 (413)
7 2pqp_A HD7A, histone deacetyla 100.0 1.4E-85 4.8E-90 670.2 28.2 354 15-384 34-419 (421)
8 3q9b_A Acetylpolyamine amidohy 100.0 2.8E-85 9.7E-90 655.2 27.6 305 20-329 2-341 (341)
9 3men_A Acetylpolyamine aminohy 100.0 9.6E-85 3.3E-89 654.8 29.1 304 20-329 23-359 (362)
10 4hf7_A Putative acylhydrolase; 82.6 1.4 4.7E-05 39.4 5.0 70 232-306 54-124 (209)
11 4h08_A Putative hydrolase; GDS 66.7 16 0.00055 31.6 7.6 64 231-306 48-117 (200)
12 3ced_A Methionine import ATP-b 65.4 4.7 0.00016 32.4 3.4 57 250-306 34-95 (98)
13 3mil_A Isoamyl acetate-hydroly 64.1 15 0.0005 32.4 6.9 69 231-307 46-120 (240)
14 1ivn_A Thioesterase I; hydrola 63.6 16 0.00054 31.3 6.8 46 255-306 56-105 (190)
15 3p94_A GDSL-like lipase; serin 62.8 7.4 0.00025 33.5 4.5 69 231-307 49-121 (204)
16 3bzw_A Putative lipase; protei 57.5 11 0.00039 34.7 5.0 37 244-282 73-110 (274)
17 3hp4_A GDSL-esterase; psychrot 55.7 14 0.00047 31.3 4.9 63 232-306 42-109 (185)
18 2qsw_A Methionine import ATP-b 51.9 4.6 0.00016 32.3 1.1 56 251-306 38-97 (100)
19 1yzf_A Lipase/acylhydrolase; s 50.9 23 0.0008 29.7 5.6 65 232-307 43-111 (195)
20 2vpt_A Lipolytic enzyme; ester 50.6 13 0.00045 32.7 4.1 58 241-306 67-126 (215)
21 2q0q_A ARYL esterase; SGNH hyd 50.1 23 0.00079 30.6 5.6 49 255-307 76-138 (216)
22 3rjt_A Lipolytic protein G-D-S 48.6 5.8 0.0002 34.3 1.3 51 256-306 78-136 (216)
23 3dci_A Arylesterase; SGNH_hydr 48.0 33 0.0011 30.5 6.4 48 255-306 94-153 (232)
24 3d2m_A Putative acetylglutamat 47.6 21 0.00071 36.0 5.4 69 235-311 16-85 (456)
25 1es9_A PAF-AH, platelet-activa 44.9 15 0.00051 32.7 3.5 42 257-306 89-136 (232)
26 3dhx_A Methionine import ATP-b 43.3 10 0.00035 30.7 1.9 55 251-305 36-94 (106)
27 2qrr_A Methionine import ATP-b 42.2 17 0.00058 28.9 3.0 56 251-306 38-97 (101)
28 1uf3_A Hypothetical protein TT 41.9 66 0.0023 27.8 7.3 54 249-312 21-74 (228)
29 2o14_A Hypothetical protein YX 41.1 27 0.00093 34.3 5.0 69 231-306 202-275 (375)
30 3aek_B Light-independent proto 40.7 40 0.0014 34.9 6.4 56 248-314 72-128 (525)
31 3dff_A Teicoplanin pseudoaglyc 39.8 32 0.0011 32.4 5.1 33 244-276 131-163 (273)
32 1vjg_A Putative lipase from th 39.4 22 0.00075 31.1 3.7 45 260-307 87-136 (218)
33 3dfi_A Pseudoaglycone deacetyl 38.4 36 0.0012 32.0 5.2 33 244-276 128-160 (270)
34 3av0_A DNA double-strand break 37.8 60 0.0021 31.7 7.0 57 243-307 43-102 (386)
35 2buf_A Acetylglutamate kinase; 37.4 79 0.0027 30.0 7.5 62 243-311 8-69 (300)
36 2q8u_A Exonuclease, putative; 37.1 64 0.0022 30.7 6.9 57 243-307 44-103 (336)
37 1ii7_A MRE11 nuclease; RAD50, 35.8 1.1E+02 0.0036 29.1 8.2 57 243-307 23-82 (333)
38 2ap9_A NAG kinase, acetylgluta 34.6 48 0.0016 31.4 5.5 66 240-312 4-69 (299)
39 1g3q_A MIND ATPase, cell divis 33.8 32 0.0011 30.5 3.9 17 173-189 29-45 (237)
40 3skv_A SSFX3; jelly roll, GDSL 33.7 43 0.0015 33.3 5.1 52 254-307 237-290 (385)
41 3q9l_A Septum site-determining 31.6 37 0.0013 30.5 3.9 18 173-190 29-46 (260)
42 2xdq_A Light-independent proto 31.2 78 0.0027 31.8 6.7 69 249-328 85-155 (460)
43 1hyq_A MIND, cell division inh 29.8 41 0.0014 30.4 4.0 17 173-189 29-45 (263)
44 2xdq_B Light-independent proto 29.7 53 0.0018 33.8 5.2 56 250-315 77-134 (511)
45 3dc7_A Putative uncharacterize 29.7 35 0.0012 30.1 3.3 48 260-307 81-136 (232)
46 3ea0_A ATPase, para family; al 28.6 36 0.0012 30.3 3.3 21 173-193 31-52 (245)
47 3kjh_A CO dehydrogenase/acetyl 27.2 44 0.0015 29.6 3.6 24 247-271 118-141 (254)
48 1fxw_F Alpha2, platelet-activa 27.0 40 0.0014 29.8 3.3 42 257-306 90-137 (229)
49 1y80_A Predicted cobalamin bin 26.2 1.2E+02 0.004 26.9 6.3 35 255-300 133-167 (210)
50 1szn_A Alpha-galactosidase; (b 25.1 1.5E+02 0.0053 29.5 7.5 72 239-310 25-100 (417)
51 1cp2_A CP2, nitrogenase iron p 24.9 55 0.0019 29.6 3.9 22 173-195 27-48 (269)
52 1k7c_A Rhamnogalacturonan acet 24.8 1.9E+02 0.0067 25.5 7.6 40 231-273 35-75 (233)
53 2rd5_A Acetylglutamate kinase- 24.4 47 0.0016 31.5 3.4 62 243-311 18-79 (298)
54 2wao_A Endoglucanase E; plant 23.4 45 0.0015 31.9 3.1 47 259-307 211-260 (341)
55 3ez2_A Plasmid partition prote 22.9 53 0.0018 32.1 3.5 16 173-189 141-156 (398)
56 3l3s_A Enoyl-COA hydratase/iso 22.7 2.7E+02 0.0092 25.6 8.3 67 242-308 31-112 (263)
57 1uas_A Alpha-galactosidase; TI 22.5 1.4E+02 0.005 28.9 6.6 72 239-310 22-97 (362)
58 2bty_A Acetylglutamate kinase; 22.4 1.8E+02 0.0062 27.0 7.1 62 244-312 4-65 (282)
59 2xj4_A MIPZ; replication, cell 22.3 59 0.002 30.2 3.6 19 173-191 31-49 (286)
60 3t1i_A Double-strand break rep 22.2 1.7E+02 0.0059 29.4 7.2 46 244-297 55-100 (431)
61 3pg5_A Uncharacterized protein 22.1 55 0.0019 31.8 3.4 22 173-195 28-49 (361)
62 3la6_A Tyrosine-protein kinase 21.8 67 0.0023 30.2 3.9 17 173-189 119-135 (286)
63 3tho_B Exonuclease, putative; 21.6 1.6E+02 0.0054 28.7 6.7 61 243-314 26-89 (379)
64 3jug_A Beta-mannanase; TIM-bar 21.2 3E+02 0.01 26.6 8.6 63 244-313 117-186 (345)
65 2i2x_B MTAC, methyltransferase 20.8 1.2E+02 0.004 28.1 5.3 37 255-302 168-204 (258)
66 2whl_A Beta-mannanase, baman5; 20.8 3.2E+02 0.011 25.0 8.5 65 244-313 94-163 (294)
67 3md9_A Hemin-binding periplasm 20.6 2.2E+02 0.0076 25.3 7.1 56 257-330 55-110 (255)
68 4hwg_A UDP-N-acetylglucosamine 20.4 2.2E+02 0.0075 27.7 7.4 20 251-270 84-103 (385)
69 2yxb_A Coenzyme B12-dependent 20.2 1.2E+02 0.004 26.1 4.8 35 255-300 63-97 (161)
70 1wcv_1 SOJ, segregation protei 20.2 68 0.0023 29.0 3.5 18 173-191 33-50 (257)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.1e-112 Score=860.12 Aligned_cols=373 Identities=62% Similarity=1.215 Sum_probs=354.4
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHH
Q 014470 16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ 95 (424)
Q Consensus 16 ~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~ 95 (424)
|+||+|+|||+|+.|.++++|||+|.|+++++++|+++|+++.+++++|++|+.++|++|||++||++|++.++....+.
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999876554332
Q ss_pred HHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhcC
Q 014470 96 LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (424)
Q Consensus 96 ~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~~ 175 (424)
.+....++++.|||+++++|++|++++||+|.||++|++|++++|+||+||+|||++++|+||||||||||||++|++.+
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 33456788999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CcEEEEEccCcCCcccccccccCCCeEEEecCCCCC-CCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 014470 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (424)
Q Consensus 176 ~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~-fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~ 254 (424)
+||||||||||||||||+|||+||+|||+|||+++. ||||||..+|+|.|+|+|+++|||||+|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 8999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCC
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~ 334 (424)
|++++|+||+||||||||+|.+||||.|+||++||++|++.++++++|+++++||||++++++|||+++|++++|.++++
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCCcCccC-CCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCcc
Q 014470 335 KMPQHEYYEYFGPDYTLHVA-PSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQ 388 (424)
Q Consensus 335 ~~P~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~sv~ 388 (424)
++|.++|+++|+|+|+|++. +++|+|+|+++||++|++++.+||++++++||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.1e-110 Score=843.87 Aligned_cols=367 Identities=68% Similarity=1.279 Sum_probs=353.9
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHH
Q 014470 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (424)
Q Consensus 15 ~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~ 94 (424)
.|+||+|+|||+++.|+++++|||+|.|+++++++|+++||++.+++++|++|+.++|++|||++||++|++.+++...+
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999987665433
Q ss_pred HHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhc
Q 014470 95 QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ 174 (424)
Q Consensus 95 ~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~ 174 (424)
..+...+++++.|||+++++|++|+++|||+|.||+++++++.++|+|||||+|||++++|+|||+||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 23345678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 014470 175 HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (424)
Q Consensus 175 ~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~ 254 (424)
++||+|||||||||||||+|||+||+|||+|+|+++.||||||..+++|.|+|+|+++|||||+|++|++|+.+|+++|.
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~ 240 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999779999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCC
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~ 334 (424)
|++++|+||+||||||||+|.+||||.|+||++||.+|++.++++++|+++++||||++++++|||+++|++++|.++|+
T Consensus 241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcC
Q 014470 335 KMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 381 (424)
Q Consensus 335 ~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l 381 (424)
++|.++||++|+|+|+|++.+++|+|+|+++||++|++++.|||++|
T Consensus 321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=1.5e-107 Score=826.85 Aligned_cols=370 Identities=42% Similarity=0.828 Sum_probs=345.9
Q ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccch
Q 014470 13 DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ 92 (424)
Q Consensus 13 ~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~ 92 (424)
..+|+||+|+||++|+.| ..+|||+|.|+++++++|+++|+++.+++++|++|+.++|++|||++||++|++.++...
T Consensus 10 ~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 345789999999999986 467999999999999999999999999999999999999999999999999998764332
Q ss_pred HHHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHH
Q 014470 93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (424)
Q Consensus 93 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll 172 (424)
.. .....+++++.|||+++++|++|++++|++|.||+++++|++++|+|||||+|||++++|+||||||||||||++|+
T Consensus 88 ~~-~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~ 166 (388)
T 3ew8_A 88 DD-HPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLR 166 (388)
T ss_dssp --------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHT
T ss_pred cc-chhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHH
Confidence 11 12245688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHH
Q 014470 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKP 251 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~-~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~ 251 (424)
+..+||||||||||||||||+|||+||+|||+|||+++ .||||||..+++|.|+|+||++|||||+|++|++|+.+|++
T Consensus 167 ~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~ 246 (388)
T 3ew8_A 167 RKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICES 246 (388)
T ss_dssp TTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHH
T ss_pred hcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999994 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCC
Q 014470 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVE 331 (424)
Q Consensus 252 iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~ 331 (424)
+|.|++++|+||+||||||||++.+||||.|+||++||++|+++|+++++|+++++||||++.+++|||+++|++++|.+
T Consensus 247 ~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~ 326 (388)
T 3ew8_A 247 VLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKT 326 (388)
T ss_dssp HHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 014470 332 VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (424)
Q Consensus 332 ~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~ 385 (424)
+|++||+++||++|+|+|+|++.+++|+|+|+++||++|+++|.+||+++++-.
T Consensus 327 l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 327 LSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999999999999988754
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=6.9e-91 Score=706.48 Aligned_cols=320 Identities=33% Similarity=0.537 Sum_probs=299.9
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHHH
Q 014470 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (424)
Q Consensus 17 ~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~~ 96 (424)
++|+|+|||+|..|.+++.|||+|.|+++++++|+++|+++.+++++|++|+.++|++||+++||++|++.++..... .
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~-~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP-K 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC-T
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC-h
Confidence 579999999999999999999999999999999999999999999999999999999999999999999865421000 0
Q ss_pred Hhhhhccc-CCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhcC
Q 014470 97 RQLKRFNV-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (424)
Q Consensus 97 ~~~~~~~~-~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~~ 175 (424)
....++++ +.|||+++++|++|++++|++|.||+++++|+ +|+|||||+|||++++++||||||||||||++|+++.
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 11345667 68999999999999999999999999999997 8999999999999999999999999999999999876
Q ss_pred -CcEEEEEccCcCCcccccccccCCCeEEEecCCCCC-CCCCCCCCCccc-CCCCCccEEecCCCCCCChHHHHHHHHHH
Q 014470 176 -ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIG-YSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (424)
Q Consensus 176 -~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~-fyPgtG~~~e~G-~g~g~g~~vNvPL~~g~~D~~yl~~~~~i 252 (424)
+||+|||||||||||||+|||+||+|||+|+|+++. ||||||..+++| .|+|+|+++|||||+|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999965 799999999999 99999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCC
Q 014470 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV 332 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~ 332 (424)
|.|++++|+||+||||||||+|.+||||.|+||+++|.+++++|+++..|++++|||||++.++++||++++++|+|.++
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCCch
Q 014470 333 DDKMPQH 339 (424)
Q Consensus 333 ~~~~P~~ 339 (424)
|+.+|+.
T Consensus 319 ~~~lp~~ 325 (375)
T 1c3p_A 319 PEKLNNK 325 (375)
T ss_dssp CSSCCHH
T ss_pred CccCCHH
Confidence 9999963
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.7e-88 Score=687.56 Aligned_cols=315 Identities=23% Similarity=0.387 Sum_probs=295.2
Q ss_pred CeEEEEEcCCCCCCCCCCC----------------CCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHH
Q 014470 17 RKVCYFYDPEVGNYYYGQG----------------HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDY 80 (424)
Q Consensus 17 ~~v~~~y~~~~~~~~~~~~----------------HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Y 80 (424)
++|+++|||+|..|.+++. |||+|.|+++++++|+++|+++.+++++|++|+.++|++||+++|
T Consensus 1 m~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Y 80 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAH 80 (369)
T ss_dssp -CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHH
T ss_pred CeEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHH
Confidence 4789999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCc-cchHHHHHhhhhcccCC-CCcCCcchHHHHHHhhhhHHHHHHHhhcCccc--eeeecCCCCCCccccCCc
Q 014470 81 VSFLRSITP-ETQQDQLRQLKRFNVGE-DCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCEAS 156 (424)
Q Consensus 81 i~~l~~~~~-~~~~~~~~~~~~~~~~~-D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~--~ai~~~gG~HHA~~~~a~ 156 (424)
|++|++.++ + ..+.++. |||+++++|++|++++|+++.|++.+++|+++ +|++|||| |||++++++
T Consensus 81 v~~l~~~~~~~---------~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~ 150 (369)
T 1zz1_A 81 LENMKRVSNLP---------TGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAM 150 (369)
T ss_dssp HHHHHHHHHST---------TCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCB
T ss_pred HHHHHHhCccc---------cceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCC
Confidence 999997653 1 1234677 99999999999999999999999999999865 56899999 999999999
Q ss_pred cceeechHHHHHHHHHhcC--CcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCC-CCCCCCcccCCCCCccEEe
Q 014470 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP-GTGDIRDIGYSKGKFYSLN 233 (424)
Q Consensus 157 GFC~~Ndvaiaa~~ll~~~--~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyP-gtG~~~e~G~g~g~g~~vN 233 (424)
|||+||||||||++|++++ +||+|||||||||||||+|||+||+|+|+|+|+++ ||| +||..+|+|.|+|+|+++|
T Consensus 151 GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~vN 229 (369)
T 1zz1_A 151 GFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNIN 229 (369)
T ss_dssp TTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEEE
T ss_pred CchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEEe
Confidence 9999999999999999874 89999999999999999999999999999999996 999 9999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeC
Q 014470 234 VPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGG 308 (424)
Q Consensus 234 vPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-----~~~pvl~lle 308 (424)
||||+|++|++|+.+|+++|.|++++|+||+||||||||+|.+||||.++||+++|.+++++|++ +++|+++++|
T Consensus 230 vPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vle 309 (369)
T 1zz1_A 230 VPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQE 309 (369)
T ss_dssp EEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999998875 3799999999
Q ss_pred CCCCCchhhhhHHHHHhhhhCCCCCCCCCchhhhh
Q 014470 309 GGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYE 343 (424)
Q Consensus 309 GGY~~~~~a~~~~~~~~~l~g~~~~~~~P~~~~~~ 343 (424)
|||+++++++||++++..|+|.++ ...|..++++
T Consensus 310 GGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 310 GGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp CCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 999999999999999999999887 6667776665
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=3.8e-88 Score=694.43 Aligned_cols=365 Identities=23% Similarity=0.358 Sum_probs=314.9
Q ss_pred CCCCeEEEEEcCCCCCCCCC----CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCc
Q 014470 14 GVKRKVCYFYDPEVGNYYYG----QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITP 89 (424)
Q Consensus 14 ~~~~~v~~~y~~~~~~~~~~----~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~ 89 (424)
..+++|+++||++|+.|..+ ..|||+|.|+++|+++|+++||.+++++++|++||.++|++|||++||++++....
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 34579999999999999865 45999999999999999999999999999999999999999999999988865321
Q ss_pred cch--H--HH----HHhh-----hhcccCCCCcCCc-chHHHHHHhhhhHHHHHHHhhcCccce--eeecCCCCCCcccc
Q 014470 90 ETQ--Q--DQ----LRQL-----KRFNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCDI--AINWAGGLHHAKKC 153 (424)
Q Consensus 90 ~~~--~--~~----~~~~-----~~~~~~~D~p~~~-~~~~~a~~~aG~sl~aa~~l~~g~~~~--ai~~~gG~HHA~~~ 153 (424)
... . .. .... ..+.++.|+++.. .++++|++++|+++.|++++++|+++. |++|||| |||+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~ 163 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEES 163 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTT
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCC
Confidence 110 0 00 0000 1123456666554 688999999999999999999998764 5678888 999999
Q ss_pred CCccceeechHHHHHHHHHhcC--CcEEEEEccCcCCcccccccccCCCeEEEecCCC--CCCCCCCCCCCcccCCCCCc
Q 014470 154 EASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKF 229 (424)
Q Consensus 154 ~a~GFC~~Ndvaiaa~~ll~~~--~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~--~~fyPgtG~~~e~G~g~g~g 229 (424)
+++||||||||||||++|++.+ +||||||||||||||||+|||+|++|+|+|+|++ +.||||||..+|+|.|+|.|
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g 243 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVG 243 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTT
T ss_pred CCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCcccc
Confidence 9999999999999999998764 8999999999999999999999999999999998 45999999999999999999
Q ss_pred cEEecCCC----CCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC--CCCCCcccCHHhHHHHHHHHHhc-CCC
Q 014470 230 YSLNVPLD----DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG--DRLGCFNLSIKGHAECVKFMRSF-NVP 302 (424)
Q Consensus 230 ~~vNvPL~----~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~--Dplg~~~lt~~g~~~~~~~l~~~-~~p 302 (424)
+++||||+ ++++|++|+.+|+++|.|++++|+||+||||||||++++ ||||+++||+++|.+++++|+++ ++|
T Consensus 244 ~~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~ 323 (413)
T 2vqm_A 244 FNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGR 323 (413)
T ss_dssp CEEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGC
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999987 458899999999999999999999999999999999999 66999999999999999999987 899
Q ss_pred EEEEeCCCCCCchhhhhHHHHHhhhhCCCCCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCC
Q 014470 303 LLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQ 382 (424)
Q Consensus 303 vl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~ 382 (424)
++++|||||+++++++||+++++.|+|.+++ .+|+... ...++.|+.++|+++++...+.|+.|+
T Consensus 324 ~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~~~~--------------~~~p~~~~~~~~~~v~~~~~~~W~~l~ 388 (413)
T 2vqm_A 324 IVLALEGGHDLTAICDASEACVSALLGNELD-PLPEKVL--------------QQRPNANAVRSMEKVMEIHSKYWRCLQ 388 (413)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCHHHH--------------HCCCCHHHHHHHHHHHHHHHTTCGGGT
T ss_pred EEEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCChhhh--------------hcCCChHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999998765 2443211 124688899999999999999999999
Q ss_pred CCCCccceeCCC
Q 014470 383 HAPSVQFQERPP 394 (424)
Q Consensus 383 ~~~sv~~~~~~~ 394 (424)
.+++++++.+++
T Consensus 389 ~~~~~~~~~~~~ 400 (413)
T 2vqm_A 389 RTTSTAGRSLIE 400 (413)
T ss_dssp SCCCCTTSCHHH
T ss_pred cchhhcCcCcch
Confidence 999999888654
No 7
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=1.4e-85 Score=670.16 Aligned_cols=354 Identities=23% Similarity=0.367 Sum_probs=304.2
Q ss_pred CCCeEEEEEcCCCCCCC----CCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCc-
Q 014470 15 VKRKVCYFYDPEVGNYY----YGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITP- 89 (424)
Q Consensus 15 ~~~~v~~~y~~~~~~~~----~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~- 89 (424)
...+|+++||++|+.|. +++.|||+|.|+++|+++|+++||++.+++++|++||.++|++|||++||+.+.....
T Consensus 34 ~~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~ 113 (421)
T 2pqp_A 34 LPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLS 113 (421)
T ss_dssp CTTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTC
T ss_pred CCCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhh
Confidence 34689999999999998 6789999999999999999999999999999999999999999999999986532110
Q ss_pred --c-chHHHHHhh-hh---------cccCCCCcCCc-chHHHHHHhhhhHHHHHHHhhcCccc--eeeecCCCCCCcccc
Q 014470 90 --E-TQQDQLRQL-KR---------FNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKC 153 (424)
Q Consensus 90 --~-~~~~~~~~~-~~---------~~~~~D~p~~~-~~~~~a~~~aG~sl~aa~~l~~g~~~--~ai~~~gG~HHA~~~ 153 (424)
+ ......... .+ .+++.|++++. .+|++|++++|+++.|++++++|+++ +|++|||| |||+++
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~ 192 (421)
T 2pqp_A 114 RLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHS 192 (421)
T ss_dssp SCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTT
T ss_pred hhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCC
Confidence 0 000000000 01 23456777774 89999999999999999999999865 67789999 999999
Q ss_pred CCccceeechHHHHHHHHHhc--CCcEEEEEccCcCCcccccccccCCCeEEEecCCC--CCCCCCCCCCCcccCCCCCc
Q 014470 154 EASGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKF 229 (424)
Q Consensus 154 ~a~GFC~~Ndvaiaa~~ll~~--~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~--~~fyPgtG~~~e~G~g~g~g 229 (424)
+++|||+||||||||++|+++ .+||+|||||||||||||+|||+||+|||+|+|++ ++||||||..+++|.|.|+|
T Consensus 193 ~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g 272 (421)
T 2pqp_A 193 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG 272 (421)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTT
T ss_pred CCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCcc
Confidence 999999999999999999976 48999999999999999999999999999999998 46999999999999999999
Q ss_pred cEEecCCCC----CCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCC--CCCCcccCHHhHHHHHHHHHhc-CCC
Q 014470 230 YSLNVPLDD----GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD--RLGCFNLSIKGHAECVKFMRSF-NVP 302 (424)
Q Consensus 230 ~~vNvPL~~----g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~D--plg~~~lt~~g~~~~~~~l~~~-~~p 302 (424)
|++||||+. |++|++|+.+|+++|.|++++|+||+||||||||++.+| |||+++||.++|.++++.|+++ ++|
T Consensus 273 ~~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~gr 352 (421)
T 2pqp_A 273 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA 352 (421)
T ss_dssp CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred ceeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCC
Confidence 999999975 478999999999999999999999999999999999987 9999999999999999999887 889
Q ss_pred EEEEeCCCCCCchhhhhHHHHHhhhhCCCCCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCC
Q 014470 303 LLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQ 382 (424)
Q Consensus 303 vl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~ 382 (424)
++++|||||++.++++||+.++..|+|.+++. +|.. .....++.+..+.|++++....+.|+-++
T Consensus 353 vv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~-l~~~--------------~~~~~p~~~a~~~i~~v~~~~~~yW~~l~ 417 (421)
T 2pqp_A 353 VVLALEGGHDLTAICDASEACVAALLGNRVDP-LSEE--------------GWKQKPNLNAIRSLEAVIRVHSKYWGCMQ 417 (421)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHTTCCCCG-GGCG--------------GGGSCCCHHHHHHHHHHHHHHTTTCGGGC
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCCCCC-Cccc--------------ccccccCHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999976542 2221 01223566677888888888777787766
Q ss_pred CC
Q 014470 383 HA 384 (424)
Q Consensus 383 ~~ 384 (424)
..
T Consensus 418 ~~ 419 (421)
T 2pqp_A 418 RL 419 (421)
T ss_dssp C-
T ss_pred hh
Confidence 44
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.8e-85 Score=655.18 Aligned_cols=305 Identities=20% Similarity=0.331 Sum_probs=279.5
Q ss_pred EEEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccc
Q 014470 20 CYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (424)
Q Consensus 20 ~~~y~~~~~~~~~~~--------~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~ 91 (424)
-+||||++..|+.+. .|||+|.|+++|+++|+++|+. ++++|++|+.++|++|||++||++|++.+++.
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~ 78 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRW 78 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 368999999998765 6999999999999999999985 57899999999999999999999999864321
Q ss_pred hH-----------------------HHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCc-cceeeecCCCC
Q 014470 92 QQ-----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (424)
Q Consensus 92 ~~-----------------------~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~-~~~ai~~~gG~ 147 (424)
.. ........|.++.|||+++++|++|++++|++|.|++++++|+ ..+|++||||
T Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG- 157 (341)
T 3q9b_A 79 KAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG- 157 (341)
T ss_dssp HHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-
T ss_pred hhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-
Confidence 10 0011234578899999999999999999999999999999985 5688999999
Q ss_pred CCccccCCccceeechHHHHHHHHHhc-CCcEEEEEccCcCCcccccccccCCCeEEEecCCCC-CCCCC-CCCCCcccC
Q 014470 148 HHAKKCEASGFCYVNDIVLAILELLKQ-HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGY 224 (424)
Q Consensus 148 HHA~~~~a~GFC~~Ndvaiaa~~ll~~-~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~-~fyPg-tG~~~e~G~ 224 (424)
|||++++++||||||||||||++|+++ .+||+|||||||||||||+|||+||+|||+|+|+++ .|||+ ||..+|+|.
T Consensus 158 HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~ 237 (341)
T 3q9b_A 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGK 237 (341)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCC
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCC
Confidence 999999999999999999999999987 699999999999999999999999999999999994 69999 999999999
Q ss_pred CCCCccEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEE
Q 014470 225 SKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLL 304 (424)
Q Consensus 225 g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl 304 (424)
|+|+++++|||||+|++|++|+.+|++++ |.+++|+||+||||||||+|.+||||.|+||+++|.+++++|+++++|++
T Consensus 238 g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v 316 (341)
T 3q9b_A 238 GAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLL 316 (341)
T ss_dssp GGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEE
T ss_pred CCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999976 67899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCchhhhhHHHHHhhhhC
Q 014470 305 LLGGGGYTIRNVARCWCYETGVALG 329 (424)
Q Consensus 305 ~lleGGY~~~~~a~~~~~~~~~l~g 329 (424)
+++||||+++++++|+..++..+.|
T Consensus 317 ~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 317 VVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999988877653
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=9.6e-85 Score=654.85 Aligned_cols=304 Identities=24% Similarity=0.389 Sum_probs=280.4
Q ss_pred EEEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccc
Q 014470 20 CYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (424)
Q Consensus 20 ~~~y~~~~~~~~~~~--------~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~ 91 (424)
.++|||+|..|..+. .|||+|.|+++|+++|+++|+ ++++|++|+.++|++|||++||++|++.+++.
T Consensus 23 ~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~~ 98 (362)
T 3men_A 23 LTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHREW 98 (362)
T ss_dssp EEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 589999999998875 799999999999999999997 68999999999999999999999998764321
Q ss_pred hH----------------------HHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCc-cceeeecCCCCC
Q 014470 92 QQ----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGLH 148 (424)
Q Consensus 92 ~~----------------------~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~-~~~ai~~~gG~H 148 (424)
.. ........+.++.|||+++++|++|++++|++|.||+.|++|+ ..+|++|||| |
T Consensus 99 ~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG-H 177 (362)
T 3men_A 99 KAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-H 177 (362)
T ss_dssp HTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-T
T ss_pred hhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-C
Confidence 10 0001123467889999999999999999999999999999985 5688999999 9
Q ss_pred CccccCCccceeechHHHHHHHHHhcCCcEEEEEccCcCCcccccccccCCCeEEEecCCC-CCCCCC-CCCCCcccCCC
Q 014470 149 HAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPG-TGDIRDIGYSK 226 (424)
Q Consensus 149 HA~~~~a~GFC~~Ndvaiaa~~ll~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~-~~fyPg-tG~~~e~G~g~ 226 (424)
||++++++||||||||||||++|+++.+||+|||||||||||||+|||+||+|||+|||++ +.|||+ ||..+|+|.|+
T Consensus 178 HA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~ 257 (362)
T 3men_A 178 HARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGE 257 (362)
T ss_dssp TCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGG
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 469999 99999999999
Q ss_pred CCccEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 014470 227 GKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 227 g~g~~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~l 306 (424)
|+++++|||||+|++|++|+.+|++++ |++++|+||+||||||||++.+||||.|+||+++|.++++.|+++++|++++
T Consensus 258 g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~v 336 (362)
T 3men_A 258 GLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIV 336 (362)
T ss_dssp GTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEE
Confidence 999999999999999999999999876 6789999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCchhhhhHHHHHhhhhC
Q 014470 307 GGGGYTIRNVARCWCYETGVALG 329 (424)
Q Consensus 307 leGGY~~~~~a~~~~~~~~~l~g 329 (424)
+||||+++++++|+..++..+.+
T Consensus 337 leGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 337 QEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988876
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.63 E-value=1.4 Score=39.37 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=40.6
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 014470 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~l 306 (424)
+|.-+. |.+-...+..|++. +-.++||+|||..|. |...+-+.....-..+.+..+++.++..+.+++++
T Consensus 54 iN~Gi~-G~tt~~~l~r~~~~----v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 54 IGRGIS-GQTSYQFLLRFRED----VINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEECT-TCCHHHHHHHHHHH----TGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEeccC-cccHHHHHHHHHHH----HHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 454332 33334555555443 335799999999997 44433322223333455666777777777776665
No 11
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=66.70 E-value=16 Score=31.58 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=38.2
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcC--CCEE
Q 014470 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFN--VPLL 304 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~~~--~pvl 304 (424)
..|.....+.+...++..++. .+...+||+||+..|.. | +..+++.|. ++++.+++.+ .+++
T Consensus 48 v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~p~~~ii 115 (200)
T 4h08_A 48 VGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYAPKAKLI 115 (200)
T ss_dssp EEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhCCCccEE
Confidence 344444455566666655544 34568999999999974 3 234555554 4666666543 3444
Q ss_pred EE
Q 014470 305 LL 306 (424)
Q Consensus 305 ~l 306 (424)
++
T Consensus 116 ~~ 117 (200)
T 4h08_A 116 WA 117 (200)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 12
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=65.40 E-value=4.7 Score=32.36 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCH-----HhHHHHHHHHHhcCCCEEEE
Q 014470 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSI-----KGHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 250 ~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~-----~g~~~~~~~l~~~~~pvl~l 306 (424)
+++|..++++|+.++=|++++.|...+.|+|.+-+.. ....+.+++|++.+..+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4778888899999999999999999999999987743 44667788888877765444
No 13
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=64.14 E-value=15 Score=32.39 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=39.0
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHh-cCCcEEEEecCC-CCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEE
Q 014470 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEV-FRPGAVVLQCGA-DSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLL 304 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~-f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~----~~~~~~l~~~~~pvl 304 (424)
.+|.... |.+-...+..+.. ++.. .+||+|||..|. |.... +.-..+.+.| .++++.+++.+.+++
T Consensus 46 v~n~g~~-G~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~~~vi 117 (240)
T 3mil_A 46 ILQRGFK-GYTSRWALKILPE----ILKHESNIVMATIFLGANDACSA---GPQSVPLPEFIDNIRQMVSLMKSYHIRPI 117 (240)
T ss_dssp EEEEECT-TCCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS---STTCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEecCcC-cccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc---CCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3444432 3334455555544 3333 699999999998 43321 1223455544 446677777777766
Q ss_pred EEe
Q 014470 305 LLG 307 (424)
Q Consensus 305 ~ll 307 (424)
++.
T Consensus 118 l~~ 120 (240)
T 3mil_A 118 IIG 120 (240)
T ss_dssp EEC
T ss_pred EEc
Confidence 664
No 14
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=63.62 E-value=16 Score=31.29 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g----~~~~~~~l~~~~~pvl~l 306 (424)
..+..++||+|||..|..=.. . ..+.+. +.++++.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGL----R--GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTS----S--SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeeccccc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 345567999999999974332 1 234444 445677777767676665
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=62.85 E-value=7.4 Score=33.54 Aligned_cols=69 Identities=10% Similarity=0.235 Sum_probs=37.8
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEE
Q 014470 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~----~~~~~~l~~~~~pvl~l 306 (424)
.+|..+. |.+-..++..+.. .+..++||+|||..|..=.... ....+.+.| .++++.+++.+.+++++
T Consensus 49 v~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~vil~ 120 (204)
T 3p94_A 49 FVDRGIS-GQTTSEMLVRFRQ----DVINLKPKAVVILAGINDIAHN---NGVIALENVFGNLVSMAELAKANHIKVIFC 120 (204)
T ss_dssp EEEEECT-TCCHHHHHHHHHH----HTGGGCEEEEEEECCHHHHTTT---TSCCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEcccC-cccHHHHHHHHHH----HHHhCCCCEEEEEeecCccccc---cCCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3454443 2333444444433 3445899999999997433221 111344444 45666777667777666
Q ss_pred e
Q 014470 307 G 307 (424)
Q Consensus 307 l 307 (424)
.
T Consensus 121 ~ 121 (204)
T 3p94_A 121 S 121 (204)
T ss_dssp C
T ss_pred e
Confidence 3
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=57.52 E-value=11 Score=34.73 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCc
Q 014470 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCF 282 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~ 282 (424)
+.+..+..++.. ...+||+|+|..|. |...+.|++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355555553321 23799999999998 55555566543
No 17
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=55.71 E-value=14 Score=31.31 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=37.0
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCC-CCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEEE
Q 014470 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~g----~~~~~~~l~~~~~pvl~l 306 (424)
+|.... |.+-.+.+..+.. .+..++||+|||..|.. ... ..+.+. +.++++.+++.+.+++++
T Consensus 42 ~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 42 INASIS-GETSGGALRRLDA----LLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp EECCCT-TCCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCcC-CccHHHHHHHHHH----HHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344432 3334455555544 44568999999999963 222 234444 445677777777777665
No 18
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=51.86 E-value=4.6 Score=32.30 Aligned_cols=56 Identities=13% Similarity=0.308 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEE
Q 014470 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~l 306 (424)
++|..++++|+-++=|++++.|...+.++|.|-+... ...+.+.+|++.+..+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 5677888999999999999999999999999877543 4566788888877655333
No 19
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=50.90 E-value=23 Score=29.75 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=35.9
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhcCCCEEEEe
Q 014470 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLG 307 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~----~~~~l~~~~~pvl~ll 307 (424)
+|.... |.+-..++..+.+ .+...+||+|||+.|..=.. .....+.+.|.. +++.++ +.+++++.
T Consensus 43 ~n~g~~-G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND~~----~~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 43 INAGMP-GDTTEDGLKRLNK----EVLIEKPDEVVIFFGANDAS----LDRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp EEEECT-TCCHHHHHHHHHH----HTGGGCCSEEEEECCTTTTC----TTSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred EeCCCC-CCCHHHHHHHHHH----hhhhcCCCEEEEEeeccccC----ccCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 444443 3333445544443 33558999999999974332 122456665554 444444 56666663
No 20
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=50.57 E-value=13 Score=32.71 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 014470 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~l 306 (424)
.-.+++..+... +..++||+|||+.|..=... ....+.+.+..+++.+++. +.+++++
T Consensus 67 ~~~~~~~~l~~~----l~~~~pd~vvi~~G~ND~~~----~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 67 TIPQIASNINNW----LNTHNPDVVFLWIGGNDLLL----NGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CHHHHHHHHHHH----HHHHCCSEEEEECCHHHHHH----HCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHHH----hhccCCCEEEEEccccccCC----CCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 334555555443 34679999999999742211 1233467888899988876 4555554
No 21
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=50.05 E-value=23 Score=30.64 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHhcCC-cEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcC---------CCEEEEe
Q 014470 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFN---------VPLLLLG 307 (424)
Q Consensus 255 p~~~~f~P-dlIvvsaG~D~~~~Dplg~~~lt~~g~----~~~~~~l~~~~---------~pvl~ll 307 (424)
..+..++| |+|||+.|..=. ...+..+.+.| .++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~----~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDT----KAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGG----SGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCccc----chhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34556788 999999997422 22234555544 45667777666 5666663
No 22
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=48.62 E-value=5.8 Score=34.33 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHhcCCcEEEEecCC-CCCCCCCCC---CcccCHHhHH----HHHHHHHhcCCCEEEE
Q 014470 256 VMEVFRPGAVVLQCGA-DSLSGDRLG---CFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (424)
Q Consensus 256 ~~~~f~PdlIvvsaG~-D~~~~Dplg---~~~lt~~g~~----~~~~~l~~~~~pvl~l 306 (424)
.+...+||+|||+.|. |.....+-+ ....+.+.|. ++++.+++.+.+++++
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456799999999996 322111100 0133455444 4566666667777666
No 23
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=47.98 E-value=33 Score=30.46 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHhcCC-cEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhc-------CCCEEEE
Q 014470 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSF-------NVPLLLL 306 (424)
Q Consensus 255 p~~~~f~P-dlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~~-------~~pvl~l 306 (424)
..+..++| |+|||..|.. |-......+.+.|. ++++.+++. +.+|+++
T Consensus 94 ~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~ 153 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIV 153 (232)
T ss_dssp HHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEE
T ss_pred HHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEE
Confidence 34566899 9999999964 33222334555554 466667664 3455555
No 24
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=47.60 E-value=21 Score=36.01 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCCCCCh-HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014470 235 PLDDGIDD-ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 235 PL~~g~~D-~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
||-..+.. .++...|++.+ |-+++|+-..|||-.|--++..+- .+...+-+..+++.+.++++|-|||-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 16 PRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ---------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 44333333 46888888875 678999999999999988875321 23344444555566777887877774
No 25
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=44.92 E-value=15 Score=32.70 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhc--CCCEEEE
Q 014470 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~--~~pvl~l 306 (424)
+..++||+|||..|..=.. .+.+ .+.++++.+++. +.+|+++
T Consensus 89 l~~~~pd~vvi~~G~ND~~--------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~ 136 (232)
T 1es9_A 89 LEHIRPKIVVVWVGTNNHG--------HTAEQVTGGIKAIVQLVNERQPQARVVVL 136 (232)
T ss_dssp TTTCCCSEEEEECCTTCTT--------SCHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCCEEEEEeecCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCeEEEe
Confidence 3457999999999974332 3444 445566667664 5566665
No 26
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=43.34 E-value=10 Score=30.71 Aligned_cols=55 Identities=11% Similarity=0.327 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCH----HhHHHHHHHHHhcCCCEEE
Q 014470 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMRSFNVPLLL 305 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~----~g~~~~~~~l~~~~~pvl~ 305 (424)
++|..++++|+-++=|++++.|...+.++|.+-+.. ....+.+++|++.++.+=+
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 577788899999999999999999999999886644 3456678888887765433
No 27
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=42.17 E-value=17 Score=28.93 Aligned_cols=56 Identities=16% Similarity=0.388 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEE
Q 014470 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~l 306 (424)
+++..++++|+-++=|++++.|...+.++|.+-+... ...+.+.+|++.+..+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 5677888999999999999999999999999877543 4566788888877655444
No 28
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=41.90 E-value=66 Score=27.83 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014470 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 249 ~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
++.++. .+.+.+||+||+ +| |.. ....+.+.+.++.+.+++.+.|++++. |--.
T Consensus 21 ~~~~~~-~~~~~~~D~vi~-~G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~-GNHD 74 (228)
T 1uf3_A 21 LEKFVK-LAPDTGADAIAL-IG-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVP-GPQD 74 (228)
T ss_dssp HHHHHT-HHHHHTCSEEEE-ES-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEEC-CTTS
T ss_pred HHHHHH-HHhhcCCCEEEE-CC-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEEC-CCCC
Confidence 444443 344558998765 33 322 111244566678888887788988774 5333
No 29
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=41.14 E-value=27 Score=34.32 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=38.9
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEEE
Q 014470 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLL 305 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~P-dlIvvsaG~D~~~~Dplg~~~lt~~g----~~~~~~~l~~~~~pvl~ 305 (424)
.+|.-.. |.+-..++.. ..+.+++.+++| |+|||+.|..=.. .....+.+. +.++++.+++.+.++++
T Consensus 202 v~N~Gis-G~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~----~~~~~~~~~~~~~l~~ii~~lr~~~a~vil 274 (375)
T 2o14_A 202 VRNMASG-GQIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTN----PKHKESEAEFKEVMRDMIRQVKAKGADVIL 274 (375)
T ss_dssp EEECCCT-TCCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGC----GGGCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccC-CCcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCC----ccCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5666553 3333344420 123455677899 9999999973221 112234444 44567777766666665
Q ss_pred E
Q 014470 306 L 306 (424)
Q Consensus 306 l 306 (424)
+
T Consensus 275 v 275 (375)
T 2o14_A 275 S 275 (375)
T ss_dssp E
T ss_pred E
Confidence 5
No 30
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=40.74 E-value=40 Score=34.93 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014470 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
.+.+.|..+.+.|+|++|+|... .-...||.+. .+++.++. +.||+.+--.||...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~----------~v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN----------GISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH----------HHHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH----------HHHHHhcC-CCCEEEEECCCcCCc
Confidence 44556667778899997666554 6667777532 24454544 788888888888864
No 31
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=39.75 E-value=32 Score=32.45 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Q 014470 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG 276 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~ 276 (424)
.+...+...|..++++++|++||.-.|.|.|.+
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD 163 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD 163 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 345566677778999999999999888777643
No 32
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=39.43 E-value=22 Score=31.10 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=26.6
Q ss_pred cCCcEEEEecCCC-CCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEEe
Q 014470 260 FRPGAVVLQCGAD-SLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (424)
Q Consensus 260 f~PdlIvvsaG~D-~~~~Dplg~~~lt~~g~----~~~~~~l~~~~~pvl~ll 307 (424)
.+||+|||+.|.. .... .+....+.+.| .++++.+++. .+++++.
T Consensus 87 ~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 87 EYNSLVVFSFGLNDTTLE--NGKPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp TSEEEEEEECCHHHHCEE--TTEESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred CCCCEEEEEecCCcchhh--cccccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 5999999999973 2210 00113444444 4566666666 7777763
No 33
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=38.40 E-value=36 Score=31.96 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCC
Q 014470 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG 276 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~ 276 (424)
.+...+...|..++++++||+||.-.|.|.|.+
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpD 160 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPD 160 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChh
Confidence 345566677778999999999999888777644
No 34
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=37.83 E-value=60 Score=31.72 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh---cCCCEEEEe
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---FNVPLLLLG 307 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~---~~~pvl~ll 307 (424)
.+...+|+.++.. +.+-+||+||+ || |.. ....-+.+.+..+.+.+++ .++|++++.
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~ 102 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHENNIKVYIVA 102 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3456778777754 55679999886 33 332 1122234444445444444 478887774
No 35
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=37.41 E-value=79 Score=29.98 Aligned_cols=62 Identities=16% Similarity=0.345 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
.++...|++.+ |-+++|+-..|||-.|-.++.++. ..+.+.+-+..+++.+.++++|-|||-
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~ 69 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGP 69 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcH
Confidence 36778888775 668889999999999988876531 112233334455566778888888874
No 36
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=37.06 E-value=64 Score=30.65 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCC-CCCCCCCCCcccCHHhHHHHHHHHHhcC--CCEEEEe
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRSFN--VPLLLLG 307 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~g~~~~~~~l~~~~--~pvl~ll 307 (424)
++...+|+.++. .+++.+||+||+ +| | ... ....+.+....+.+.++++. +|++++.
T Consensus 44 ~~~~~~l~~lv~-~~~~~~~D~vli-aG-D~l~d-----~~~~~~~~~~~~~~~l~~L~~~~pv~~i~ 103 (336)
T 2q8u_A 44 EELKKALDKVVE-EAEKREVDLILL-TG-DLLHS-----RNNPSVVALHDLLDYLKRMMRTAPVVVLP 103 (336)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-ES-CSBSC-----SSCCCHHHHHHHHHHHHHHHHHSCEEECC
T ss_pred HHHHHHHHHHHH-HHHHhCCCEEEE-CC-ccccC-----CCCCCHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 456677877775 456679998776 44 4 221 11223333333444444332 7887764
No 37
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=35.77 E-value=1.1e+02 Score=29.12 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHH---HHHHHHHhcCCCEEEEe
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA---ECVKFMRSFNVPLLLLG 307 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~---~~~~~l~~~~~pvl~ll 307 (424)
+++..+|+.++. .+.+.+||+||+ +| |.... .+-+.+.+. +.++.++..+.|++++.
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G-Dl~d~-----~~~~~~~~~~~~~~l~~l~~~~~~v~~v~ 82 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG-DLFHS-----SRPSPGTLKKAIALLQIPKEHSIPVFAIE 82 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES-CSBSS-----SSCCHHHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC-CcCCC-----CCCCHHHHHHHHHHHHHHHHCCCcEEEeC
Confidence 456677877775 466789998876 34 33221 112333333 34445555578988774
No 38
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=34.65 E-value=48 Score=31.45 Aligned_cols=66 Identities=15% Similarity=0.323 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014470 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 240 ~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
+....+...|++.+ |-+++|+-..|||-.|--++.+.. ..+.+.+.+..+++.+.++++|-+||-.
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 69 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQ 69 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 34577888888876 678999999999999966654320 1122333444555567778877777743
No 39
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=33.81 E-value=32 Score=30.47 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.4
Q ss_pred hcCCcEEEEEccCcCCc
Q 014470 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||.|..+|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 29 DRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HTTCCEEEEECCTTSCC
T ss_pred hcCCeEEEEeCCCCCCC
Confidence 45689999999998876
No 40
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=33.73 E-value=43 Score=33.28 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEEe
Q 014470 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (424)
Q Consensus 254 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~ll 307 (424)
..++...+||+|||.+|..=...+ + ...--.+.+..+++.+++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566899999999997543322 0 1112234456678888765 56777764
No 41
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=31.59 E-value=37 Score=30.50 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=14.9
Q ss_pred hcCCcEEEEEccCcCCcc
Q 014470 173 KQHERVLYVDIDIHHGDG 190 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdG 190 (424)
+..+||++||.|..+|+=
T Consensus 29 ~~g~~VlliD~D~~~~~~ 46 (260)
T 3q9l_A 29 QKGKKTVVIDFAIGLRNL 46 (260)
T ss_dssp HTTCCEEEEECCCSSCCH
T ss_pred hCCCcEEEEECCCCCCCh
Confidence 456899999999987763
No 42
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=31.17 E-value=78 Score=31.77 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhhhHHHHHhh
Q 014470 249 FKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYETGV 326 (424)
Q Consensus 249 ~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~a~~~~~~~~~ 326 (424)
+++.|..+.++|+|++|+|... .-...||. +..+.+.++ +.++||+.+--.||... ....+......
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 4667778888999999877654 33344443 334556564 45899999999999863 44454444443
Q ss_pred hh
Q 014470 327 AL 328 (424)
Q Consensus 327 l~ 328 (424)
++
T Consensus 154 l~ 155 (460)
T 2xdq_A 154 MA 155 (460)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=29.80 E-value=41 Score=30.40 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.4
Q ss_pred hcCCcEEEEEccCcCCc
Q 014470 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||.|...|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLGHDVTIVDADITMAN 45 (263)
T ss_dssp HTTCCEEEEECCCSSSS
T ss_pred hCCCcEEEEECCCCCCC
Confidence 44689999999998876
No 44
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=29.70 E-value=53 Score=33.76 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCch
Q 014470 250 KPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRN 315 (424)
Q Consensus 250 ~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~ 315 (424)
.+.|..+.+.|+|++|+|...+ -...||.+. .+++.++ ..++||+.+--.||....
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~----------~v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQ----------NFVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHTTCCCHH----------HHHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHhccCHH----------HHHHHhhhccCCCEEEeeCCCcccch
Confidence 3445566778999999888776 666666433 3455554 458999999999998753
No 45
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=29.67 E-value=35 Score=30.10 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=30.8
Q ss_pred cCCcEEEEecCC-CCCCCCCCCCcc-cCHH----hHHHHHHHHHhc--CCCEEEEe
Q 014470 260 FRPGAVVLQCGA-DSLSGDRLGCFN-LSIK----GHAECVKFMRSF--NVPLLLLG 307 (424)
Q Consensus 260 f~PdlIvvsaG~-D~~~~Dplg~~~-lt~~----g~~~~~~~l~~~--~~pvl~ll 307 (424)
.+||+|+|..|. |...+-+++.+. .+.+ .+.++++.+++. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999997 444444555432 1122 556677777765 67777764
No 46
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=28.59 E-value=36 Score=30.27 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=16.4
Q ss_pred hc-CCcEEEEEccCcCCccccc
Q 014470 173 KQ-HERVLYVDIDIHHGDGVEE 193 (424)
Q Consensus 173 ~~-~~RVlivD~DvHHGdGtq~ 193 (424)
+. .+||++||+|..+|+=+..
T Consensus 31 ~~~g~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 31 QEPDIHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp TSTTCCEEEEECCTTTCCGGGG
T ss_pred hCcCCCEEEEECCCCCCCHHHH
Confidence 44 7899999999998775443
No 47
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=27.22 E-value=44 Score=29.55 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCC
Q 014470 247 YLFKPIIGKVMEVFRPGAVVLQCGA 271 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG~ 271 (424)
..++.++..+ .+-+.|+|||-++.
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp 141 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGA 141 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCC
Confidence 3456666655 23467999999875
No 48
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=26.98 E-value=40 Score=29.83 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=27.2
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhc--CCCEEEE
Q 014470 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g----~~~~~~~l~~~--~~pvl~l 306 (424)
+..++||+|||..|..=. | .+.+. +..+++.+++. +.+|+++
T Consensus 90 l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 345799999999997433 2 34444 44566666654 5566665
No 49
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.20 E-value=1.2e+02 Score=26.86 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcC
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~ 300 (424)
..+++.+||+|.+|+-... +.....++++.+++.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~~-----------~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLTT-----------TMMNMKSTIDALIAAG 167 (210)
T ss_dssp HHHHHHCCSEEEEECCSGG-----------GTHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHhcC
Confidence 4567789999999985321 3455677888888754
No 50
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=25.07 E-value=1.5e+02 Score=29.50 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEEeCCC
Q 014470 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLLGGGG 310 (424)
Q Consensus 239 g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~lleGG 310 (424)
.++.+.++...+.++..=+.+...+.|+|-.|......|.+|.|...++ |...+++.+++.|.++-+=.+-|
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~~g 100 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAG 100 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEEEeCCC
Confidence 4566777777766655445678899999999999988888999877655 78899999999888764444433
No 51
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=24.85 E-value=55 Score=29.63 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.9
Q ss_pred hcCCcEEEEEccCcCCccccccc
Q 014470 173 KQHERVLYVDIDIHHGDGVEEAF 195 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F 195 (424)
+..+||++||+|.. |+.+...+
T Consensus 27 ~~G~~VlliD~D~q-~~~~~~~~ 48 (269)
T 1cp2_A 27 AMGKTIMVVGCDPK-ADSTRLLL 48 (269)
T ss_dssp TTTCCEEEEEECTT-SCSSHHHH
T ss_pred HCCCcEEEEcCCCC-CCHHHHhc
Confidence 45689999999964 55565544
No 52
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=24.80 E-value=1.9e+02 Score=25.52 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=22.8
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCC
Q 014470 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADS 273 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~P-dlIvvsaG~D~ 273 (424)
.+|..+.. -+-..++.. ..+..++.+.+| |+|||+.|..=
T Consensus 35 v~N~gi~G-~tt~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND 75 (233)
T 1k7c_A 35 VVNDAVAG-RSARSYTRE--GRFENIADVVTAGDYVIVEFGHND 75 (233)
T ss_dssp EEECCCTT-CCHHHHHHT--THHHHHHHHCCTTCEEEECCCTTS
T ss_pred EEecccCC-ccHHHHHHc--ccHHHHHhhCCCCCEEEEEccCCC
Confidence 34655533 333445431 123445556666 99999999843
No 53
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=24.37 E-value=47 Score=31.51 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
..+...|++.+ |-+++|+-..|||-.|--++.+. + ..+.+.+-+..+++.+.++++|-|||-
T Consensus 18 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~ 79 (298)
T 2rd5_A 18 DYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSP-----E-LKSSVVSDLVLLACVGLRPILVHGGGP 79 (298)
T ss_dssp CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCCEEEEECCcH
Confidence 46888888875 66899999999999996665431 0 012233334445556777887877764
No 54
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=23.37 E-value=45 Score=31.91 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=28.6
Q ss_pred hcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEEe
Q 014470 259 VFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (424)
Q Consensus 259 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~ll 307 (424)
.++||+|||..|. |...+.+ ...--.+.|..+++.+++. +.+|+++.
T Consensus 211 ~~~PdlVvI~lGtND~~~~~~--~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 211 KYVPQVVVINLGTNDFSTSFA--DKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GCCCSEEEEECCHHHHSSSCC--CHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEeCccccCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 6899999999998 4433321 0111124566677777764 45666654
No 55
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=22.86 E-value=53 Score=32.13 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.1
Q ss_pred hcCCcEEEEEccCcCCc
Q 014470 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||+|. +|+
T Consensus 141 ~~g~rVlliD~D~-q~~ 156 (398)
T 3ez2_A 141 MEDLRILVIDLDP-QSS 156 (398)
T ss_dssp GGCCCEEEEEECT-TCH
T ss_pred cCCCeEEEEeCCC-CCC
Confidence 3578999999998 565
No 56
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=22.71 E-value=2.7e+02 Score=25.56 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEE-------ecCCCCCCCCCCCC-cccCH-------HhHHHHHHHHHhcCCCEEEE
Q 014470 242 DESYHYLFKPIIGKVMEVFRPGAVVL-------QCGADSLSGDRLGC-FNLSI-------KGHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvv-------saG~D~~~~Dplg~-~~lt~-------~g~~~~~~~l~~~~~pvl~l 306 (424)
+.+.+..+...+..+-..-..-+||+ ++|.|.-.-..... ..-+. ..+..++..+..+.+|+|..
T Consensus 31 ~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (263)
T 3l3s_A 31 SRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIAL 110 (263)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45677777777766544333456665 55666543321100 00011 12234556667788999876
Q ss_pred eC
Q 014470 307 GG 308 (424)
Q Consensus 307 le 308 (424)
..
T Consensus 111 v~ 112 (263)
T 3l3s_A 111 VE 112 (263)
T ss_dssp ES
T ss_pred EC
Confidence 53
No 57
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=22.54 E-value=1.4e+02 Score=28.85 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEEeCCC
Q 014470 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLLGGGG 310 (424)
Q Consensus 239 g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~lleGG 310 (424)
+++.+.++...+.++..=+.+...+.|+|-+|......|..|.|...++ |...+++.+++.|.++-+=.+=|
T Consensus 22 ~~~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~ih~~Glk~Giw~~~~ 97 (362)
T 1uas_A 22 GINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAG 97 (362)
T ss_dssp CCCHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCCCCCeeEChhccCccHHHHHHHHHHCCCEeEEEeeCC
Confidence 4566777776666554434667899999999999876677788866654 78899999999888765444433
No 58
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=22.44 E-value=1.8e+02 Score=26.97 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014470 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
.+...|++.+ |-+++|+-..|||-.|--++.+. + ..+.+.+-+..+++.+.++++|-+||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQE-----N-AKKAFIQDIILLKYTGIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 4667787765 67899998999999996665421 0 0122233344455557778877777743
No 59
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=22.34 E-value=59 Score=30.18 Aligned_cols=19 Identities=16% Similarity=0.330 Sum_probs=15.0
Q ss_pred hcCCcEEEEEccCcCCccc
Q 014470 173 KQHERVLYVDIDIHHGDGV 191 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGt 191 (424)
+..+||++||+|..+|+=+
T Consensus 31 ~~G~~VlliD~D~~q~~l~ 49 (286)
T 2xj4_A 31 YGGAKVAVIDLDLRQRTSA 49 (286)
T ss_dssp HTTCCEEEEECCTTTCHHH
T ss_pred HCCCcEEEEECCCCCCCHH
Confidence 4568999999999777643
No 60
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=22.17 E-value=1.7e+02 Score=29.43 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHH
Q 014470 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR 297 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~ 297 (424)
+...+|+.++. .+.+.+||+||+ +| |... ...-+.+....+.+.++
T Consensus 55 d~~~~l~~ll~-~~~~~~~D~Vli-aG-Dlfd-----~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 55 DTFVTLDEILR-LAQENEVDFILL-GG-DLFH-----ENKPSRKTLHTCLELLR 100 (431)
T ss_dssp HHHHHHHHHHH-HHHHTTCSEEEE-CS-CCBS-----SSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHhhcCCCEEEE-cC-cccc-----CCCCCHHHHHHHHHHHH
Confidence 45567777665 456789999998 33 4432 22345555555555554
No 61
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=22.15 E-value=55 Score=31.77 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.3
Q ss_pred hcCCcEEEEEccCcCCccccccc
Q 014470 173 KQHERVLYVDIDIHHGDGVEEAF 195 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F 195 (424)
+..+|||+||+|.. |+.+...+
T Consensus 28 ~~G~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 28 LQGKRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp HTTCCEEEEECCTT-CTTHHHHS
T ss_pred hCCCcEEEEEcCCC-CChhhhhc
Confidence 45689999999987 77776654
No 62
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.80 E-value=67 Score=30.21 Aligned_cols=17 Identities=35% Similarity=0.685 Sum_probs=14.1
Q ss_pred hcCCcEEEEEccCcCCc
Q 014470 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||.|...++
T Consensus 119 ~~G~rVLLID~D~~~~~ 135 (286)
T 3la6_A 119 QTNKRVLLIDCDMRKGY 135 (286)
T ss_dssp TTTCCEEEEECCTTTCC
T ss_pred hCCCCEEEEeccCCCCC
Confidence 44689999999998764
No 63
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=21.58 E-value=1.6e+02 Score=28.70 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHH---HHHHHHhcCCCEEEEeCCCCCCc
Q 014470 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE---CVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~---~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
.+...+|+.++. ++.+.+||+||+ +| |... -..+.+.+.+.. .++.|... +|++++ -| |.+
T Consensus 26 ~~~~~~l~~l~~-~~~~~~~D~vli-aG-Dl~h----d~~~~~~~~~~~~~~~l~~l~~~-~~v~~i-~G--NHD 89 (379)
T 3tho_B 26 EELKKALDKVVE-EAEKREVDLILL-TG-DLLH----SRNNPSVVALHDLLDYLKRMMRT-APVVVL-PG--NQD 89 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-CS-CCBS----CSSSCCHHHHHHHHHHHHHHHHH-SCEEEC-CC--TTS
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC-Cccc----cCCCCCHHHHHHHHHHHHHHHhC-CCEEEE-cC--CCc
Confidence 456777777664 567789999987 33 3321 122334444443 44445545 788776 45 554
No 64
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=21.23 E-value=3e+02 Score=26.56 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcC--CcEEEEecCCCCCCCCCCCCcccCH----HhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 014470 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~--PdlIvvsaG~D~~~~Dplg~~~lt~----~g~~~~~~~l~~~~~-pvl~lleGGY~~ 313 (424)
.+...+...+..++++|+ |+.|++..+ ..|.+. .+. +.+.++++.+++.+. .+|++.+-+|+.
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~--~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGS--WDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCS--SCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCC--CCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 456666666677777875 456666655 567663 233 334567778887754 456666666664
No 65
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.82 E-value=1.2e+02 Score=28.11 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=25.6
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCC
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVP 302 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p 302 (424)
..+.+.+|++|.+|+-...+ .....++++.|++.+.+
T Consensus 168 ~~~~~~~~d~V~lS~l~~~~-----------~~~~~~~i~~l~~~~~~ 204 (258)
T 2i2x_B 168 AAVQKEKPIMLTGTALMTTT-----------MYAFKEVNDMLLENGIK 204 (258)
T ss_dssp HHHHHHCCSEEEEECCCTTT-----------TTHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCCEEEEEeeccCC-----------HHHHHHHHHHHHhcCCC
Confidence 45677899999999875433 23456678888776543
No 66
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=20.79 E-value=3.2e+02 Score=25.00 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcC--CcEEEEecCCCCCCCCCCCCcccC--HHhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 014470 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~--PdlIvvsaG~D~~~~Dplg~~~lt--~~g~~~~~~~l~~~~~-pvl~lleGGY~~ 313 (424)
.....+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.|.++++.+++.+. .+|++.+.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445566666667778886 444555443 5566543211 2446678888888743 455555545554
No 67
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=20.61 E-value=2.2e+02 Score=25.32 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=34.1
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCC
Q 014470 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~ 330 (424)
+-+.+||+||.+.... . ....+.|++.++|++++-. ..+...+.+ +...++.++|.
T Consensus 55 i~~l~PDlIi~~~~~~------------~----~~~~~~L~~~gipvv~~~~-~~~~~~~~~-~i~~lg~~~g~ 110 (255)
T 3md9_A 55 ILAMKPTMLLVSELAQ------------P----SLVLTQIASSGVNVVTVPG-QTTPESVAM-KINAVATALHQ 110 (255)
T ss_dssp HHTTCCSEEEEETTCS------------C----HHHHHHHHHTTCEEEEECC-CCSHHHHHH-HHHHHHHHHTC
T ss_pred HHccCCCEEEEcCCcC------------c----hhHHHHHHHcCCcEEEeCC-CCCHHHHHH-HHHHHHHHhCC
Confidence 4467999999875521 0 2356678888999998742 234433333 33445556774
No 68
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=20.37 E-value=2.2e+02 Score=27.73 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 014470 251 PIIGKVMEVFRPGAVVLQCG 270 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG 270 (424)
.-+..++++++||+|++.-+
T Consensus 84 ~~l~~~l~~~kPD~Vlv~gd 103 (385)
T 4hwg_A 84 EKVDEVLEKEKPDAVLFYGD 103 (385)
T ss_dssp HHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHhcCCcEEEEECC
Confidence 44567889999999998743
No 69
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.21 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=3% Similarity=-0.114 Sum_probs=24.4
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcC
Q 014470 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~ 300 (424)
..+.+++||+|.+|+=.. -+.....++++.|++.+
T Consensus 63 ~aa~~~~~diV~lS~~~~-----------~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 63 MAAVQEDVDVIGVSILNG-----------AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHTTCSEEEEEESSS-----------CHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCEEEEEeech-----------hhHHHHHHHHHHHHhcC
Confidence 456788999999997532 23445566788887754
No 70
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=20.18 E-value=68 Score=29.03 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=13.9
Q ss_pred hcCCcEEEEEccCcCCccc
Q 014470 173 KQHERVLYVDIDIHHGDGV 191 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGt 191 (424)
+..+||++||+|.. |+-+
T Consensus 33 ~~g~~VlliD~D~~-~~~~ 50 (257)
T 1wcv_1 33 RLGKRVLLVDLDPQ-GNAT 50 (257)
T ss_dssp HTTCCEEEEECCTT-CHHH
T ss_pred HCCCCEEEEECCCC-cCHH
Confidence 44689999999984 6643
Done!