Query 014471
Match_columns 424
No_of_seqs 197 out of 712
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 1.2E-12 2.6E-17 101.8 9.1 63 321-383 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 2.9E-11 6.2E-16 94.0 9.8 62 322-383 3-64 (64)
3 KOG4005 Transcription factor X 99.3 3.9E-11 8.4E-16 116.3 12.5 74 321-394 66-139 (292)
4 KOG4343 bZIP transcription fac 99.1 1.1E-10 2.3E-15 122.8 7.3 64 323-386 280-343 (655)
5 PF07716 bZIP_2: Basic region 99.1 8.4E-10 1.8E-14 83.7 8.1 53 321-374 2-54 (54)
6 KOG0709 CREB/ATF family transc 99.0 8.7E-10 1.9E-14 114.5 6.4 68 322-389 249-316 (472)
7 KOG3584 cAMP response element 98.7 1.4E-08 3.1E-13 100.9 6.7 52 322-373 289-340 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 3.2E-08 6.9E-13 82.4 -7.0 75 303-379 11-85 (92)
9 KOG0837 Transcriptional activa 97.7 0.00013 2.7E-09 72.3 8.5 47 329-375 211-257 (279)
10 KOG4571 Activating transcripti 97.4 0.0012 2.7E-08 66.1 10.2 58 321-378 223-281 (294)
11 KOG4196 bZIP transcription fac 97.2 0.0037 8.1E-08 56.6 10.4 82 302-392 33-114 (135)
12 PF06005 DUF904: Protein of un 97.0 0.014 3E-07 47.8 11.2 64 345-408 4-68 (72)
13 KOG3119 Basic region leucine z 96.7 0.0089 1.9E-07 58.9 9.5 60 321-380 191-250 (269)
14 PRK13169 DNA replication intia 96.7 0.0078 1.7E-07 52.9 7.9 49 346-394 9-57 (110)
15 PF06156 DUF972: Protein of un 96.6 0.011 2.3E-07 51.6 8.0 50 345-394 8-57 (107)
16 KOG3863 bZIP transcription fac 96.2 0.011 2.4E-07 64.4 7.1 79 309-394 475-553 (604)
17 KOG4005 Transcription factor X 95.6 0.15 3.3E-06 50.7 11.5 85 320-404 69-156 (292)
18 TIGR02894 DNA_bind_RsfA transc 95.2 0.17 3.7E-06 47.4 9.9 70 341-410 83-156 (161)
19 COG4467 Regulator of replicati 95.1 0.075 1.6E-06 47.1 6.7 50 346-395 9-60 (114)
20 PF08614 ATG16: Autophagy prot 94.9 0.57 1.2E-05 43.8 12.5 70 322-391 114-183 (194)
21 TIGR02449 conserved hypothetic 94.6 0.25 5.5E-06 40.1 8.0 46 347-392 9-54 (65)
22 PF04102 SlyX: SlyX; InterPro 94.5 0.17 3.8E-06 40.5 7.1 51 345-395 4-54 (69)
23 PRK00295 hypothetical protein; 94.5 0.27 5.8E-06 39.7 8.0 48 346-393 6-53 (68)
24 COG4942 Membrane-bound metallo 94.4 0.9 1.9E-05 48.2 13.9 87 324-410 38-125 (420)
25 PRK00736 hypothetical protein; 94.4 0.26 5.7E-06 39.7 7.8 49 345-393 5-53 (68)
26 PRK15422 septal ring assembly 94.4 0.72 1.6E-05 38.9 10.5 40 345-384 4-43 (79)
27 PF10473 CENP-F_leu_zip: Leuci 94.2 2.9 6.2E-05 38.4 15.0 74 322-395 29-102 (140)
28 PRK02793 phi X174 lysis protei 94.2 0.29 6.2E-06 39.9 7.7 50 345-394 8-57 (72)
29 PRK04325 hypothetical protein; 94.1 0.29 6.4E-06 40.0 7.7 48 346-393 10-57 (74)
30 PRK04406 hypothetical protein; 93.9 0.34 7.3E-06 39.9 7.6 49 345-393 11-59 (75)
31 PRK02119 hypothetical protein; 93.9 0.35 7.6E-06 39.5 7.7 50 344-393 8-57 (73)
32 PF11559 ADIP: Afadin- and alp 93.9 3.1 6.8E-05 37.1 14.4 67 325-391 46-112 (151)
33 PF10224 DUF2205: Predicted co 93.9 0.55 1.2E-05 39.4 8.9 48 348-395 19-66 (80)
34 COG1579 Zn-ribbon protein, pos 93.8 3.1 6.6E-05 41.3 15.4 50 345-394 89-138 (239)
35 PF13747 DUF4164: Domain of un 93.8 1.3 2.9E-05 37.4 11.3 68 324-391 11-78 (89)
36 PHA03155 hypothetical protein; 93.7 0.55 1.2E-05 42.0 9.1 73 346-421 9-93 (115)
37 PRK10884 SH3 domain-containing 93.6 0.88 1.9E-05 43.8 11.1 45 344-388 124-168 (206)
38 TIGR02449 conserved hypothetic 93.5 0.98 2.1E-05 36.7 9.6 47 347-393 2-48 (65)
39 PHA03162 hypothetical protein; 93.4 0.26 5.7E-06 45.0 6.8 80 342-421 10-102 (135)
40 PF09726 Macoilin: Transmembra 93.3 1.1 2.5E-05 50.0 12.9 43 346-388 539-581 (697)
41 PRK00846 hypothetical protein; 93.3 0.52 1.1E-05 39.4 7.8 50 344-393 12-61 (77)
42 PF11932 DUF3450: Protein of u 93.3 3.9 8.5E-05 39.5 15.1 43 350-392 54-96 (251)
43 PF06005 DUF904: Protein of un 93.0 0.65 1.4E-05 38.1 7.9 42 349-390 15-56 (72)
44 PRK09039 hypothetical protein; 93.0 3.3 7.2E-05 42.4 14.8 44 350-393 121-164 (343)
45 PRK10884 SH3 domain-containing 92.9 3.1 6.8E-05 40.0 13.7 55 345-399 118-172 (206)
46 COG3074 Uncharacterized protei 92.9 0.89 1.9E-05 38.0 8.5 33 354-386 27-59 (79)
47 PRK11637 AmiB activator; Provi 92.9 3.2 6.9E-05 43.0 14.7 49 343-391 73-121 (428)
48 PRK11637 AmiB activator; Provi 92.8 3.7 8E-05 42.5 14.9 47 347-393 193-239 (428)
49 PF11559 ADIP: Afadin- and alp 92.7 6.9 0.00015 34.9 14.9 45 339-383 46-90 (151)
50 PRK13729 conjugal transfer pil 92.6 0.48 1E-05 50.8 8.5 47 346-392 77-123 (475)
51 PF06156 DUF972: Protein of un 92.5 0.87 1.9E-05 39.8 8.5 52 349-406 5-56 (107)
52 PF07989 Microtub_assoc: Micro 92.3 2.1 4.5E-05 35.3 10.0 53 347-399 2-62 (75)
53 PF06785 UPF0242: Uncharacteri 92.1 3.1 6.7E-05 43.5 13.1 52 340-391 122-173 (401)
54 PF05812 Herpes_BLRF2: Herpesv 92.0 1.3 2.9E-05 39.8 9.2 79 343-421 1-92 (118)
55 PF14662 CCDC155: Coiled-coil 91.8 1.6 3.4E-05 42.2 10.1 49 346-394 9-57 (193)
56 PF08537 NBP1: Fungal Nap bind 91.3 2.6 5.6E-05 43.5 11.5 89 322-410 120-219 (323)
57 PF11932 DUF3450: Protein of u 91.2 10 0.00022 36.7 15.1 40 346-385 57-96 (251)
58 TIGR03752 conj_TIGR03752 integ 91.2 0.99 2.1E-05 48.5 8.9 46 348-393 76-122 (472)
59 COG3074 Uncharacterized protei 91.1 3.8 8.3E-05 34.3 10.2 48 345-392 4-51 (79)
60 PF15070 GOLGA2L5: Putative go 90.8 4.6 9.9E-05 44.8 13.7 68 327-394 104-195 (617)
61 PF14197 Cep57_CLD_2: Centroso 90.8 2.1 4.6E-05 34.8 8.5 49 347-395 14-62 (69)
62 PF04880 NUDE_C: NUDE protein, 90.8 0.38 8.2E-06 45.2 4.8 53 347-403 2-54 (166)
63 PF07888 CALCOCO1: Calcium bin 90.7 7.4 0.00016 42.8 14.9 56 328-383 154-209 (546)
64 PF10805 DUF2730: Protein of u 90.4 2.6 5.7E-05 36.4 9.3 48 348-395 45-94 (106)
65 PRK13169 DNA replication intia 90.2 1.9 4.2E-05 38.1 8.4 50 349-404 5-54 (110)
66 PF14662 CCDC155: Coiled-coil 90.1 5.6 0.00012 38.5 12.0 46 348-393 98-143 (193)
67 KOG0243 Kinesin-like protein [ 90.1 8.6 0.00019 45.1 15.5 64 329-392 415-495 (1041)
68 PF05266 DUF724: Protein of un 89.9 13 0.00029 35.4 14.4 56 322-377 87-142 (190)
69 PF10186 Atg14: UV radiation r 89.4 19 0.00041 34.4 15.1 48 341-388 59-106 (302)
70 PF12325 TMF_TATA_bd: TATA ele 89.4 6 0.00013 35.4 10.9 12 379-390 74-85 (120)
71 PF02183 HALZ: Homeobox associ 89.3 1.2 2.6E-05 33.6 5.6 37 357-393 3-39 (45)
72 PF13851 GAS: Growth-arrest sp 89.3 13 0.00028 35.5 13.9 60 322-381 70-129 (201)
73 COG2433 Uncharacterized conser 89.1 4.4 9.5E-05 45.1 11.8 46 345-390 422-467 (652)
74 TIGR03752 conj_TIGR03752 integ 89.0 3.1 6.8E-05 44.8 10.4 29 348-376 69-97 (472)
75 COG1579 Zn-ribbon protein, pos 89.0 21 0.00046 35.5 15.4 71 323-393 30-109 (239)
76 KOG1414 Transcriptional activa 89.0 0.018 4E-07 59.4 -5.9 61 321-381 151-215 (395)
77 PF07200 Mod_r: Modifier of ru 88.9 16 0.00035 32.4 14.0 84 301-385 4-88 (150)
78 KOG0288 WD40 repeat protein Ti 88.6 13 0.00029 39.9 14.4 29 344-372 47-75 (459)
79 COG2900 SlyX Uncharacterized p 88.5 2.4 5.1E-05 35.3 7.2 51 345-395 8-58 (72)
80 KOG4360 Uncharacterized coiled 88.4 3.9 8.4E-05 44.8 10.6 59 346-404 220-279 (596)
81 PF08614 ATG16: Autophagy prot 88.4 7.8 0.00017 36.2 11.5 46 349-394 127-172 (194)
82 PF05266 DUF724: Protein of un 88.3 7.3 0.00016 37.1 11.4 48 343-390 129-176 (190)
83 PF02183 HALZ: Homeobox associ 88.0 2 4.4E-05 32.4 6.0 42 349-390 2-43 (45)
84 PF12718 Tropomyosin_1: Tropom 87.9 7.9 0.00017 35.2 10.9 50 346-395 36-88 (143)
85 KOG4643 Uncharacterized coiled 87.8 10 0.00022 44.5 14.0 29 345-373 530-558 (1195)
86 PRK03918 chromosome segregatio 87.7 15 0.00031 41.0 14.9 7 304-310 145-151 (880)
87 KOG0995 Centromere-associated 87.6 17 0.00038 40.2 15.0 48 342-389 277-324 (581)
88 PF10805 DUF2730: Protein of u 87.5 7.4 0.00016 33.6 10.0 54 343-396 33-88 (106)
89 KOG0982 Centrosomal protein Nu 87.4 11 0.00023 40.7 13.0 49 346-394 298-346 (502)
90 KOG0250 DNA repair protein RAD 87.2 15 0.00032 43.3 14.9 14 347-360 374-387 (1074)
91 PF04849 HAP1_N: HAP1 N-termin 86.9 8.5 0.00018 39.6 11.5 61 348-408 220-284 (306)
92 PF14197 Cep57_CLD_2: Centroso 86.9 12 0.00026 30.5 10.3 56 349-404 2-58 (69)
93 PF08172 CASP_C: CASP C termin 86.9 2.6 5.6E-05 41.7 7.7 49 336-386 86-134 (248)
94 PF12325 TMF_TATA_bd: TATA ele 86.5 16 0.00034 32.8 11.7 32 351-382 29-60 (120)
95 KOG0946 ER-Golgi vesicle-tethe 86.4 5.3 0.00012 45.8 10.6 52 339-390 665-716 (970)
96 PF04111 APG6: Autophagy prote 86.3 8.4 0.00018 39.1 11.2 47 347-393 45-91 (314)
97 KOG1103 Predicted coiled-coil 86.2 2.7 5.9E-05 44.3 7.8 63 333-395 226-288 (561)
98 PRK13922 rod shape-determining 86.2 5.1 0.00011 39.0 9.3 34 356-389 73-109 (276)
99 TIGR00219 mreC rod shape-deter 85.7 1.9 4.2E-05 42.9 6.3 38 353-390 67-108 (283)
100 PF09726 Macoilin: Transmembra 85.6 23 0.0005 40.0 15.1 37 344-380 544-580 (697)
101 KOG1962 B-cell receptor-associ 85.5 5 0.00011 39.4 8.8 37 353-389 173-209 (216)
102 PF08317 Spc7: Spc7 kinetochor 85.4 13 0.00027 37.7 11.9 48 345-392 209-256 (325)
103 PF03962 Mnd1: Mnd1 family; I 85.1 17 0.00038 34.4 12.0 21 338-358 76-96 (188)
104 COG3883 Uncharacterized protei 85.0 13 0.00029 37.5 11.6 46 347-392 40-85 (265)
105 PF00038 Filament: Intermediat 84.8 41 0.00089 32.9 15.2 20 349-368 227-246 (312)
106 KOG0980 Actin-binding protein 84.8 22 0.00048 41.4 14.4 78 316-393 381-458 (980)
107 PF10211 Ax_dynein_light: Axon 84.6 20 0.00043 34.0 12.1 38 348-385 123-160 (189)
108 PF10481 CENP-F_N: Cenp-F N-te 84.6 21 0.00045 36.7 12.8 16 304-319 6-21 (307)
109 PF02403 Seryl_tRNA_N: Seryl-t 84.4 23 0.00051 29.7 12.7 45 351-395 42-89 (108)
110 PRK05431 seryl-tRNA synthetase 84.2 16 0.00034 38.5 12.4 68 322-394 10-87 (425)
111 PF04111 APG6: Autophagy prote 84.2 32 0.00069 35.0 14.2 57 338-394 57-113 (314)
112 PRK10698 phage shock protein P 84.0 15 0.00032 35.6 11.2 59 345-403 99-157 (222)
113 PF04849 HAP1_N: HAP1 N-termin 84.0 7.5 0.00016 39.9 9.6 47 344-390 240-286 (306)
114 PF05103 DivIVA: DivIVA protei 84.0 0.58 1.3E-05 40.0 1.6 47 345-391 25-71 (131)
115 TIGR02977 phageshock_pspA phag 83.7 16 0.00035 34.8 11.3 59 344-402 98-156 (219)
116 PF09730 BicD: Microtubule-ass 83.5 8 0.00017 43.8 10.4 56 349-404 31-87 (717)
117 PF12709 Kinetocho_Slk19: Cent 83.5 5.3 0.00011 34.3 7.0 50 345-394 27-77 (87)
118 PF05667 DUF812: Protein of un 83.4 9.7 0.00021 42.1 10.9 63 342-404 325-387 (594)
119 COG4026 Uncharacterized protei 83.3 12 0.00027 37.5 10.5 31 348-378 138-168 (290)
120 PF07106 TBPIP: Tat binding pr 83.3 5 0.00011 36.5 7.4 51 344-394 85-137 (169)
121 PF15035 Rootletin: Ciliary ro 83.2 17 0.00038 34.4 11.1 57 344-400 66-122 (182)
122 smart00338 BRLZ basic region l 83.2 8.5 0.00018 29.9 7.6 23 370-392 30-52 (65)
123 PF06216 RTBV_P46: Rice tungro 82.7 8 0.00017 39.5 9.1 50 345-394 64-113 (389)
124 PF12718 Tropomyosin_1: Tropom 82.6 17 0.00036 33.1 10.4 49 345-393 14-62 (143)
125 PF04728 LPP: Lipoprotein leuc 82.6 12 0.00027 29.7 8.3 44 347-390 5-48 (56)
126 PF09728 Taxilin: Myosin-like 82.4 43 0.00093 34.1 14.3 80 324-403 50-158 (309)
127 PRK15422 septal ring assembly 82.4 8.3 0.00018 32.7 7.7 52 350-407 23-74 (79)
128 PRK00888 ftsB cell division pr 82.4 5.6 0.00012 34.5 6.9 24 348-371 37-60 (105)
129 PF08317 Spc7: Spc7 kinetochor 82.2 12 0.00026 37.7 10.3 6 176-181 105-110 (325)
130 PF04012 PspA_IM30: PspA/IM30 82.2 20 0.00043 33.7 11.1 53 348-400 101-153 (221)
131 PF06632 XRCC4: DNA double-str 82.1 25 0.00054 36.5 12.7 36 349-384 141-176 (342)
132 TIGR02894 DNA_bind_RsfA transc 82.1 14 0.00031 34.9 9.9 46 350-395 82-133 (161)
133 KOG0977 Nuclear envelope prote 81.8 22 0.00049 39.2 12.7 60 334-393 130-189 (546)
134 KOG4643 Uncharacterized coiled 81.7 8.4 0.00018 45.2 9.8 68 324-394 491-558 (1195)
135 PF00170 bZIP_1: bZIP transcri 81.6 12 0.00026 29.1 7.9 16 374-389 41-56 (64)
136 PRK10803 tol-pal system protei 81.6 9.5 0.00021 37.6 9.1 47 346-392 55-101 (263)
137 PF14915 CCDC144C: CCDC144C pr 81.3 33 0.00072 35.4 12.9 68 334-401 182-249 (305)
138 PF05837 CENP-H: Centromere pr 81.0 17 0.00036 31.5 9.4 39 355-393 6-44 (106)
139 PF09304 Cortex-I_coil: Cortex 80.9 36 0.00078 30.4 11.4 44 348-391 33-76 (107)
140 KOG0996 Structural maintenance 80.7 55 0.0012 39.4 15.9 12 251-262 736-747 (1293)
141 PRK10803 tol-pal system protei 80.6 8.6 0.00019 37.9 8.4 41 344-384 60-100 (263)
142 KOG1899 LAR transmembrane tyro 80.5 21 0.00044 40.5 11.9 66 328-395 128-196 (861)
143 cd07666 BAR_SNX7 The Bin/Amphi 80.5 35 0.00077 33.9 12.6 70 325-404 150-221 (243)
144 PF09744 Jnk-SapK_ap_N: JNK_SA 80.5 35 0.00075 31.9 11.8 45 355-399 85-130 (158)
145 KOG1029 Endocytic adaptor prot 80.4 24 0.00052 40.9 12.5 13 42-54 115-127 (1118)
146 PF04340 DUF484: Protein of un 80.2 8.5 0.00018 36.5 8.0 45 346-394 41-85 (225)
147 TIGR00414 serS seryl-tRNA synt 80.0 27 0.00058 36.7 12.3 46 350-395 42-91 (418)
148 PF04642 DUF601: Protein of un 80.0 7.6 0.00016 39.4 7.8 59 346-404 218-285 (311)
149 KOG0250 DNA repair protein RAD 79.9 31 0.00068 40.8 13.6 64 346-409 366-431 (1074)
150 KOG4797 Transcriptional regula 79.9 5.1 0.00011 36.0 5.9 43 359-402 67-109 (123)
151 KOG1414 Transcriptional activa 79.8 0.31 6.8E-06 50.5 -1.9 55 322-376 283-338 (395)
152 PF15294 Leu_zip: Leucine zipp 79.8 6.2 0.00013 40.0 7.2 45 350-394 130-174 (278)
153 KOG3650 Predicted coiled-coil 79.8 5.8 0.00013 35.3 6.1 42 352-393 63-104 (120)
154 PF06785 UPF0242: Uncharacteri 79.5 43 0.00093 35.4 13.2 68 325-396 76-157 (401)
155 KOG0239 Kinesin (KAR3 subfamil 79.5 33 0.00072 38.6 13.3 49 347-395 243-291 (670)
156 PF07888 CALCOCO1: Calcium bin 79.1 63 0.0014 35.9 15.0 23 350-372 197-219 (546)
157 PF09755 DUF2046: Uncharacteri 78.7 23 0.00049 36.7 10.9 25 348-372 44-68 (310)
158 PF09744 Jnk-SapK_ap_N: JNK_SA 78.7 40 0.00087 31.5 11.7 45 349-393 93-137 (158)
159 PRK14160 heat shock protein Gr 78.4 32 0.00069 33.7 11.3 42 349-390 58-99 (211)
160 KOG1265 Phospholipase C [Lipid 78.2 47 0.001 39.1 14.0 64 328-391 1032-1100(1189)
161 PF01166 TSC22: TSC-22/dip/bun 78.0 3.9 8.4E-05 32.9 4.1 30 359-388 14-43 (59)
162 PF08647 BRE1: BRE1 E3 ubiquit 78.0 42 0.00091 28.5 14.4 64 327-390 6-69 (96)
163 PLN02678 seryl-tRNA synthetase 78.0 25 0.00054 37.7 11.4 70 322-395 14-93 (448)
164 PF07407 Seadorna_VP6: Seadorn 77.9 6.6 0.00014 41.1 6.9 27 367-393 33-59 (420)
165 KOG0971 Microtubule-associated 77.5 35 0.00076 40.1 12.8 41 334-374 399-439 (1243)
166 PRK00888 ftsB cell division pr 77.4 8.9 0.00019 33.2 6.6 32 362-393 30-61 (105)
167 KOG0804 Cytoplasmic Zn-finger 77.3 38 0.00082 36.9 12.4 19 327-345 367-385 (493)
168 KOG0447 Dynamin-like GTP bindi 77.3 16 0.00034 41.2 9.8 64 341-409 223-291 (980)
169 PF09602 PhaP_Bmeg: Polyhydrox 77.3 69 0.0015 30.6 13.8 88 322-410 56-149 (165)
170 PLN02320 seryl-tRNA synthetase 77.2 37 0.0008 37.1 12.5 69 322-395 75-152 (502)
171 PF04977 DivIC: Septum formati 77.1 11 0.00025 29.3 6.6 29 364-392 22-50 (80)
172 COG4467 Regulator of replicati 77.0 13 0.00029 33.3 7.6 50 349-404 5-54 (114)
173 PRK04863 mukB cell division pr 76.9 81 0.0018 38.8 16.3 19 325-343 322-340 (1486)
174 KOG3119 Basic region leucine z 76.4 15 0.00033 36.5 8.8 28 362-389 218-245 (269)
175 COG4372 Uncharacterized protei 76.4 89 0.0019 33.8 14.6 66 332-397 131-203 (499)
176 TIGR02209 ftsL_broad cell divi 76.2 14 0.0003 29.7 7.0 35 360-394 25-59 (85)
177 KOG0977 Nuclear envelope prote 76.1 49 0.0011 36.7 13.1 43 346-388 149-191 (546)
178 COG4026 Uncharacterized protei 75.9 34 0.00075 34.5 10.9 45 350-394 161-205 (290)
179 PF10473 CENP-F_leu_zip: Leuci 75.9 66 0.0014 29.7 14.5 12 346-357 25-36 (140)
180 smart00787 Spc7 Spc7 kinetocho 75.9 41 0.00088 34.4 11.8 44 346-389 205-248 (312)
181 PF05600 DUF773: Protein of un 75.8 27 0.00058 38.0 11.0 72 343-421 430-501 (507)
182 PF05700 BCAS2: Breast carcino 75.7 14 0.00029 35.6 8.0 34 354-387 177-210 (221)
183 COG5293 Predicted ATPase [Gene 75.4 61 0.0013 35.7 13.3 83 326-408 329-421 (591)
184 KOG4196 bZIP transcription fac 75.3 12 0.00027 34.4 7.1 34 362-395 77-110 (135)
185 PRK09039 hypothetical protein; 75.2 1.1E+02 0.0023 31.7 15.1 46 348-393 133-178 (343)
186 PF10779 XhlA: Haemolysin XhlA 75.2 22 0.00047 28.5 7.9 54 348-401 2-55 (71)
187 PF12709 Kinetocho_Slk19: Cent 75.1 25 0.00055 30.2 8.5 45 341-385 38-82 (87)
188 PF05911 DUF869: Plant protein 74.8 71 0.0015 36.8 14.4 70 346-415 93-170 (769)
189 TIGR03185 DNA_S_dndD DNA sulfu 74.7 1E+02 0.0022 34.0 15.2 44 346-389 422-465 (650)
190 PF13851 GAS: Growth-arrest sp 74.7 82 0.0018 30.2 15.1 30 365-394 92-121 (201)
191 PF05377 FlaC_arch: Flagella a 74.6 12 0.00025 29.8 5.9 14 347-360 2-15 (55)
192 PF09486 HrpB7: Bacterial type 74.6 44 0.00095 31.4 10.7 78 342-419 76-154 (158)
193 cd07596 BAR_SNX The Bin/Amphip 74.3 67 0.0014 28.9 13.8 39 353-394 146-184 (218)
194 PF15058 Speriolin_N: Sperioli 74.1 7.5 0.00016 37.8 5.7 33 348-388 8-40 (200)
195 KOG1103 Predicted coiled-coil 74.1 65 0.0014 34.5 12.9 74 313-390 104-177 (561)
196 PRK02119 hypothetical protein; 74.1 26 0.00056 28.7 8.1 46 347-392 4-49 (73)
197 KOG2391 Vacuolar sorting prote 74.0 33 0.00072 36.1 10.7 36 349-384 243-278 (365)
198 PF07106 TBPIP: Tat binding pr 73.9 23 0.00051 32.2 8.7 48 347-394 81-130 (169)
199 PF13094 CENP-Q: CENP-Q, a CEN 73.8 40 0.00087 30.5 10.1 36 350-385 46-81 (160)
200 PF06810 Phage_GP20: Phage min 73.8 49 0.0011 30.6 10.8 39 368-406 53-91 (155)
201 PF06632 XRCC4: DNA double-str 73.8 41 0.00089 35.0 11.4 29 350-378 149-177 (342)
202 COG4942 Membrane-bound metallo 73.8 86 0.0019 33.8 13.9 35 346-380 67-101 (420)
203 PF11365 DUF3166: Protein of u 73.8 14 0.00029 32.3 6.7 47 347-393 3-49 (96)
204 KOG2189 Vacuolar H+-ATPase V0 73.6 26 0.00057 40.2 10.6 41 363-403 96-136 (829)
205 PF14523 Syntaxin_2: Syntaxin- 73.6 49 0.0011 27.1 10.6 47 346-392 11-59 (102)
206 PF05300 DUF737: Protein of un 73.2 31 0.00067 33.2 9.6 53 327-379 116-168 (187)
207 cd07596 BAR_SNX The Bin/Amphip 73.1 71 0.0015 28.8 12.3 58 335-392 107-171 (218)
208 PF05377 FlaC_arch: Flagella a 73.1 24 0.00052 28.1 7.3 35 354-395 2-36 (55)
209 PF04977 DivIC: Septum formati 73.1 14 0.00031 28.7 6.3 29 343-371 22-50 (80)
210 PF13805 Pil1: Eisosome compon 73.0 33 0.00071 34.8 10.2 23 368-390 167-189 (271)
211 KOG4673 Transcription factor T 72.8 94 0.002 35.9 14.4 43 322-364 503-556 (961)
212 KOG3433 Protein involved in me 72.8 39 0.00085 33.0 10.2 45 334-378 105-149 (203)
213 PF08702 Fib_alpha: Fibrinogen 72.7 56 0.0012 30.0 10.8 54 341-394 78-132 (146)
214 PF00038 Filament: Intermediat 72.5 1E+02 0.0022 30.2 14.3 11 405-415 135-145 (312)
215 PF05529 Bap31: B-cell recepto 72.4 34 0.00074 31.7 9.6 25 365-389 160-184 (192)
216 PF12329 TMF_DNA_bd: TATA elem 72.4 53 0.0011 26.9 9.7 38 349-386 9-46 (74)
217 PRK04406 hypothetical protein; 72.3 32 0.0007 28.4 8.3 46 347-392 6-51 (75)
218 PF15030 DUF4527: Protein of u 72.3 93 0.002 31.7 12.9 51 364-414 56-107 (277)
219 KOG0982 Centrosomal protein Nu 72.3 1.3E+02 0.0028 33.0 14.6 51 339-389 298-348 (502)
220 PRK04863 mukB cell division pr 72.1 95 0.0021 38.2 15.3 44 347-390 357-400 (1486)
221 KOG0288 WD40 repeat protein Ti 72.0 55 0.0012 35.4 11.9 44 348-391 30-73 (459)
222 PF05278 PEARLI-4: Arabidopsis 71.9 66 0.0014 32.8 12.0 41 353-393 201-241 (269)
223 PF07558 Shugoshin_N: Shugoshi 71.9 4.4 9.5E-05 30.6 2.9 35 356-390 11-45 (46)
224 PF15619 Lebercilin: Ciliary p 71.8 96 0.0021 29.7 12.9 29 344-372 81-109 (194)
225 PF06419 COG6: Conserved oligo 71.8 56 0.0012 36.1 12.5 62 343-404 43-104 (618)
226 PF09738 DUF2051: Double stran 71.7 66 0.0014 33.0 12.1 17 317-333 85-101 (302)
227 KOG2391 Vacuolar sorting prote 71.7 38 0.00082 35.7 10.5 8 140-147 86-93 (365)
228 PF08826 DMPK_coil: DMPK coile 71.7 51 0.0011 26.5 9.6 35 356-390 22-56 (61)
229 KOG0976 Rho/Rac1-interacting s 71.6 67 0.0014 37.7 13.0 6 303-308 37-42 (1265)
230 PRK00409 recombination and DNA 71.6 62 0.0013 36.9 13.0 9 198-206 412-420 (782)
231 PF03980 Nnf1: Nnf1 ; InterPr 71.6 6.4 0.00014 33.5 4.3 31 342-372 77-107 (109)
232 PF13805 Pil1: Eisosome compon 71.5 42 0.00092 34.1 10.6 52 323-374 143-194 (271)
233 PF09789 DUF2353: Uncharacteri 71.5 1.2E+02 0.0026 31.6 13.9 33 374-406 190-223 (319)
234 PF00769 ERM: Ezrin/radixin/mo 71.3 73 0.0016 31.4 12.0 52 349-400 51-102 (246)
235 PF10186 Atg14: UV radiation r 71.2 97 0.0021 29.5 16.4 35 340-374 65-99 (302)
236 TIGR01069 mutS2 MutS2 family p 71.0 69 0.0015 36.5 13.2 9 198-206 407-415 (771)
237 PRK14127 cell division protein 71.0 28 0.00062 30.8 8.2 27 349-375 41-67 (109)
238 PRK13923 putative spore coat p 71.0 76 0.0017 30.3 11.5 31 364-394 109-139 (170)
239 PRK05431 seryl-tRNA synthetase 70.9 42 0.00092 35.4 10.9 30 354-383 30-59 (425)
240 PF04999 FtsL: Cell division p 70.8 21 0.00047 29.5 7.1 40 357-396 33-72 (97)
241 KOG0946 ER-Golgi vesicle-tethe 70.7 48 0.001 38.6 11.7 59 345-403 650-709 (970)
242 COG2919 Septum formation initi 70.6 64 0.0014 28.3 10.3 67 323-395 20-86 (117)
243 KOG0249 LAR-interacting protei 70.6 31 0.00067 39.6 10.2 61 355-415 219-284 (916)
244 KOG2264 Exostosin EXT1L [Signa 70.5 31 0.00066 38.9 10.0 47 345-391 93-139 (907)
245 PF15058 Speriolin_N: Sperioli 70.3 9.5 0.00021 37.1 5.5 41 369-409 8-48 (200)
246 PRK13729 conjugal transfer pil 70.3 19 0.00041 39.2 8.2 45 348-392 72-116 (475)
247 PF12329 TMF_DNA_bd: TATA elem 70.2 59 0.0013 26.6 10.0 53 343-395 10-62 (74)
248 KOG4603 TBP-1 interacting prot 70.2 84 0.0018 30.6 11.6 24 370-393 120-143 (201)
249 PF02388 FemAB: FemAB family; 70.1 28 0.00061 36.2 9.3 47 344-394 241-287 (406)
250 PF04102 SlyX: SlyX; InterPro 70.0 31 0.00067 27.7 7.6 44 350-393 2-45 (69)
251 PF07412 Geminin: Geminin; In 69.5 21 0.00046 34.8 7.7 29 359-387 125-153 (200)
252 PF12808 Mto2_bdg: Micro-tubul 69.2 13 0.00029 29.1 5.1 46 342-390 1-46 (52)
253 PF08232 Striatin: Striatin fa 69.0 40 0.00086 30.4 8.9 44 350-393 16-59 (134)
254 KOG4343 bZIP transcription fac 68.9 21 0.00046 39.6 8.3 63 321-394 275-337 (655)
255 PF08286 Spc24: Spc24 subunit 68.8 0.37 8E-06 41.9 -3.9 38 359-396 6-43 (118)
256 PTZ00464 SNF-7-like protein; P 68.8 1.2E+02 0.0026 29.6 12.7 30 352-381 68-97 (211)
257 COG3883 Uncharacterized protei 68.7 44 0.00096 33.9 10.0 51 326-376 40-90 (265)
258 PF12777 MT: Microtubule-bindi 68.7 30 0.00064 35.2 9.0 45 344-388 234-278 (344)
259 PF10168 Nup88: Nuclear pore c 68.3 1.2E+02 0.0026 34.5 14.3 57 348-404 561-618 (717)
260 PF05557 MAD: Mitotic checkpoi 68.3 75 0.0016 35.5 12.7 21 373-393 566-586 (722)
261 KOG0804 Cytoplasmic Zn-finger 68.2 1.6E+02 0.0035 32.3 14.4 9 247-255 214-222 (493)
262 smart00787 Spc7 Spc7 kinetocho 68.0 1.3E+02 0.0029 30.8 13.4 8 176-183 100-107 (312)
263 PF06810 Phage_GP20: Phage min 67.9 83 0.0018 29.1 10.9 62 339-403 28-92 (155)
264 PRK14143 heat shock protein Gr 67.9 44 0.00095 33.2 9.6 6 411-416 155-160 (238)
265 KOG4673 Transcription factor T 67.8 69 0.0015 36.9 12.1 24 373-396 605-628 (961)
266 KOG0161 Myosin class II heavy 67.6 86 0.0019 39.6 13.8 65 329-393 1644-1708(1930)
267 PF04899 MbeD_MobD: MbeD/MobD 67.6 37 0.0008 28.0 7.7 19 372-390 41-59 (70)
268 PRK10636 putative ABC transpor 67.6 46 0.001 36.5 10.8 49 346-394 564-619 (638)
269 PF14988 DUF4515: Domain of un 67.6 72 0.0016 30.8 10.9 43 353-395 157-199 (206)
270 PF12711 Kinesin-relat_1: Kine 67.6 80 0.0017 27.1 10.1 36 357-392 22-63 (86)
271 PF07716 bZIP_2: Basic region 67.6 17 0.00036 27.6 5.3 28 367-394 26-53 (54)
272 PF07407 Seadorna_VP6: Seadorn 67.5 25 0.00054 37.0 8.2 26 353-378 33-58 (420)
273 KOG1029 Endocytic adaptor prot 67.3 83 0.0018 36.8 12.6 15 39-53 115-129 (1118)
274 PF08172 CASP_C: CASP C termin 67.2 21 0.00046 35.4 7.4 31 345-375 107-137 (248)
275 TIGR00634 recN DNA repair prot 67.2 63 0.0014 35.0 11.5 62 348-409 171-238 (563)
276 PF09728 Taxilin: Myosin-like 67.0 57 0.0012 33.2 10.5 23 366-388 244-266 (309)
277 PF07798 DUF1640: Protein of u 67.0 58 0.0013 30.2 9.8 60 348-409 47-107 (177)
278 PF08826 DMPK_coil: DMPK coile 66.5 62 0.0014 26.0 8.5 27 349-375 29-55 (61)
279 PF01763 Herpes_UL6: Herpesvir 66.5 54 0.0012 36.4 10.9 21 401-421 464-484 (557)
280 PF09304 Cortex-I_coil: Cortex 66.3 98 0.0021 27.7 12.2 55 330-384 22-76 (107)
281 COG1340 Uncharacterized archae 66.3 1.7E+02 0.0036 30.3 14.0 43 349-391 45-87 (294)
282 TIGR00606 rad50 rad50. This fa 66.2 1.4E+02 0.003 35.9 14.9 70 341-410 1031-1108(1311)
283 PF10146 zf-C4H2: Zinc finger- 66.2 1.2E+02 0.0025 30.0 12.2 52 339-390 26-77 (230)
284 KOG0999 Microtubule-associated 66.2 33 0.00071 38.5 9.1 53 351-403 106-159 (772)
285 PF00769 ERM: Ezrin/radixin/mo 65.9 1.4E+02 0.0031 29.4 13.2 45 336-380 24-68 (246)
286 PF01166 TSC22: TSC-22/dip/bun 65.7 10 0.00022 30.6 4.0 22 345-366 21-42 (59)
287 PF10506 MCC-bdg_PDZ: PDZ doma 65.3 76 0.0016 26.0 9.1 60 349-408 2-61 (67)
288 KOG1962 B-cell receptor-associ 65.3 1.1E+02 0.0023 30.4 11.6 40 350-389 149-188 (216)
289 COG1842 PspA Phage shock prote 65.2 79 0.0017 31.0 10.8 44 349-392 96-139 (225)
290 PF15290 Syntaphilin: Golgi-lo 65.1 59 0.0013 33.6 10.1 27 347-373 77-103 (305)
291 PRK02224 chromosome segregatio 65.1 2.3E+02 0.005 31.9 15.7 7 65-71 68-74 (880)
292 PF04340 DUF484: Protein of un 65.0 30 0.00065 32.9 7.7 38 367-404 41-78 (225)
293 PRK13922 rod shape-determining 65.0 72 0.0016 31.1 10.5 25 368-392 71-95 (276)
294 KOG4403 Cell surface glycoprot 65.0 57 0.0012 35.7 10.4 12 173-184 90-101 (575)
295 PF04728 LPP: Lipoprotein leuc 64.9 54 0.0012 26.2 7.8 36 352-387 3-38 (56)
296 PF14817 HAUS5: HAUS augmin-li 64.8 95 0.0021 35.0 12.5 37 347-383 81-117 (632)
297 PF05667 DUF812: Protein of un 64.6 1.6E+02 0.0035 32.9 14.2 33 376-408 443-475 (594)
298 PF10211 Ax_dynein_light: Axon 64.5 1.3E+02 0.0028 28.5 12.6 53 341-393 123-176 (189)
299 KOG1924 RhoA GTPase effector D 64.4 18 0.0004 41.8 7.0 12 408-419 1040-1051(1102)
300 PRK02224 chromosome segregatio 64.4 1.7E+02 0.0038 32.9 14.6 7 303-309 148-154 (880)
301 PRK00846 hypothetical protein; 64.2 62 0.0013 27.2 8.5 42 348-389 9-50 (77)
302 COG1382 GimC Prefoldin, chaper 64.2 32 0.00069 31.1 7.2 39 339-377 64-102 (119)
303 PRK10698 phage shock protein P 64.2 1.2E+02 0.0026 29.5 11.7 41 352-392 99-139 (222)
304 PRK14161 heat shock protein Gr 64.1 90 0.002 29.7 10.6 40 350-389 17-56 (178)
305 KOG0971 Microtubule-associated 63.5 64 0.0014 38.2 11.0 42 348-389 1008-1049(1243)
306 PF12017 Tnp_P_element: Transp 63.3 40 0.00087 33.3 8.4 12 411-422 74-85 (236)
307 PF03915 AIP3: Actin interacti 63.3 2.2E+02 0.0048 30.7 14.4 64 329-392 197-272 (424)
308 TIGR01843 type_I_hlyD type I s 63.3 1.3E+02 0.0028 30.1 12.1 97 324-420 81-198 (423)
309 PF14282 FlxA: FlxA-like prote 63.2 44 0.00095 28.9 7.7 19 367-385 52-70 (106)
310 KOG0996 Structural maintenance 63.1 1.2E+02 0.0026 36.8 13.2 74 335-408 532-605 (1293)
311 PF07558 Shugoshin_N: Shugoshi 63.1 8.5 0.00018 29.0 2.9 42 326-368 3-44 (46)
312 TIGR02132 phaR_Bmeg polyhydrox 63.0 52 0.0011 31.9 8.8 49 345-393 79-127 (189)
313 COG1196 Smc Chromosome segrega 62.9 2.1E+02 0.0045 34.0 15.4 7 254-260 637-643 (1163)
314 PF15290 Syntaphilin: Golgi-lo 62.8 64 0.0014 33.3 9.9 63 347-416 91-158 (305)
315 KOG0980 Actin-binding protein 62.4 1.3E+02 0.0028 35.4 13.1 62 328-389 449-517 (980)
316 PF09727 CortBP2: Cortactin-bi 62.1 1.5E+02 0.0034 28.8 11.9 46 344-389 126-171 (192)
317 PRK02793 phi X174 lysis protei 62.1 61 0.0013 26.5 7.9 42 348-389 4-45 (72)
318 KOG0976 Rho/Rac1-interacting s 62.1 43 0.00093 39.1 9.3 50 345-394 106-155 (1265)
319 PF13166 AAA_13: AAA domain 61.8 2.1E+02 0.0045 31.4 14.3 46 349-394 407-452 (712)
320 TIGR00606 rad50 rad50. This fa 61.8 2.3E+02 0.005 34.1 15.6 8 303-310 168-175 (1311)
321 KOG0161 Myosin class II heavy 61.7 1.7E+02 0.0036 37.3 14.7 22 346-367 944-965 (1930)
322 PF10226 DUF2216: Uncharacteri 61.6 1.7E+02 0.0036 28.7 14.0 69 300-379 7-75 (195)
323 PF09730 BicD: Microtubule-ass 61.4 68 0.0015 36.7 10.7 14 375-388 123-136 (717)
324 PRK10361 DNA recombination pro 61.4 1.8E+02 0.0039 31.9 13.4 23 350-372 65-87 (475)
325 PF01920 Prefoldin_2: Prefoldi 61.3 27 0.00058 28.6 5.9 11 349-359 66-76 (106)
326 PF08232 Striatin: Striatin fa 61.1 59 0.0013 29.3 8.4 57 328-384 15-71 (134)
327 PF03962 Mnd1: Mnd1 family; I 61.0 56 0.0012 31.0 8.7 46 346-391 70-128 (188)
328 KOG2077 JNK/SAPK-associated pr 60.9 36 0.00079 38.3 8.3 61 320-396 313-373 (832)
329 PF11180 DUF2968: Protein of u 60.9 1.2E+02 0.0025 29.7 10.8 75 317-392 99-173 (192)
330 PF11180 DUF2968: Protein of u 60.6 1.6E+02 0.0034 28.8 11.6 40 342-381 95-134 (192)
331 PRK04325 hypothetical protein; 60.4 61 0.0013 26.6 7.7 43 347-389 4-46 (74)
332 KOG1853 LIS1-interacting prote 60.2 2.1E+02 0.0046 29.6 12.9 33 347-379 93-125 (333)
333 COG1196 Smc Chromosome segrega 60.2 1.9E+02 0.0041 34.4 14.4 10 105-114 116-125 (1163)
334 TIGR03495 phage_LysB phage lys 59.9 1.3E+02 0.0029 27.6 10.5 14 359-372 40-53 (135)
335 COG1842 PspA Phage shock prote 59.9 1.8E+02 0.0039 28.6 13.4 25 364-388 118-142 (225)
336 PF12777 MT: Microtubule-bindi 59.8 52 0.0011 33.5 8.8 49 347-395 230-278 (344)
337 cd07599 BAR_Rvs167p The Bin/Am 59.8 1.6E+02 0.0034 27.8 13.2 62 329-390 108-177 (216)
338 PF07227 DUF1423: Protein of u 59.7 88 0.0019 34.0 10.7 43 336-378 341-383 (446)
339 KOG0243 Kinesin-like protein [ 59.7 1.9E+02 0.0042 34.6 14.1 35 328-362 438-472 (1041)
340 PF09738 DUF2051: Double stran 59.2 50 0.0011 33.8 8.5 43 347-389 121-163 (302)
341 KOG0933 Structural maintenance 59.2 1.8E+02 0.004 34.8 13.7 10 252-261 644-653 (1174)
342 PRK00295 hypothetical protein; 59.0 69 0.0015 25.9 7.7 42 350-391 3-44 (68)
343 PF12999 PRKCSH-like: Glucosid 58.7 73 0.0016 30.5 9.0 33 340-372 141-173 (176)
344 PRK13923 putative spore coat p 58.7 59 0.0013 31.1 8.3 34 346-379 112-145 (170)
345 PF01486 K-box: K-box region; 58.6 29 0.00063 29.2 5.8 22 367-388 76-97 (100)
346 COG4985 ABC-type phosphate tra 58.4 51 0.0011 33.4 8.2 79 303-381 163-243 (289)
347 TIGR02209 ftsL_broad cell divi 58.4 70 0.0015 25.6 7.7 29 344-372 30-58 (85)
348 PF10481 CENP-F_N: Cenp-F N-te 58.3 1.6E+02 0.0034 30.6 11.7 35 348-382 56-90 (307)
349 PRK11091 aerobic respiration c 58.3 1.7E+02 0.0037 32.1 13.0 56 345-400 103-158 (779)
350 COG1729 Uncharacterized protei 58.3 24 0.00051 35.6 6.0 48 347-395 58-105 (262)
351 TIGR00998 8a0101 efflux pump m 58.3 70 0.0015 31.3 9.2 24 349-372 98-121 (334)
352 PRK14011 prefoldin subunit alp 58.1 56 0.0012 30.1 7.9 13 385-397 125-137 (144)
353 PF15369 KIAA1328: Uncharacter 57.7 1.3E+02 0.0028 31.5 11.2 63 342-408 30-94 (328)
354 PF07058 Myosin_HC-like: Myosi 57.7 38 0.00082 35.4 7.3 31 354-384 2-32 (351)
355 COG5185 HEC1 Protein involved 57.5 2.7E+02 0.0058 31.1 13.8 113 307-419 285-417 (622)
356 PF15254 CCDC14: Coiled-coil d 57.5 1.5E+02 0.0032 34.6 12.4 8 176-183 255-262 (861)
357 PRK14148 heat shock protein Gr 57.4 1E+02 0.0023 29.8 9.9 36 354-389 42-77 (195)
358 PF04899 MbeD_MobD: MbeD/MobD 57.4 79 0.0017 26.1 7.8 33 348-380 31-63 (70)
359 KOG1924 RhoA GTPase effector D 57.0 21 0.00046 41.3 5.9 6 174-179 656-661 (1102)
360 COG1792 MreC Cell shape-determ 56.8 33 0.00073 34.4 6.8 44 342-389 63-106 (284)
361 PF04859 DUF641: Plant protein 56.8 34 0.00075 31.2 6.2 36 351-386 93-128 (131)
362 PRK01156 chromosome segregatio 56.8 3.4E+02 0.0073 30.9 15.3 8 303-310 148-155 (895)
363 PF13815 Dzip-like_N: Iguana/D 56.6 73 0.0016 27.8 8.1 29 361-389 82-110 (118)
364 KOG3335 Predicted coiled-coil 56.5 16 0.00034 35.2 4.2 34 340-373 101-134 (181)
365 PF07058 Myosin_HC-like: Myosi 56.5 2.7E+02 0.0058 29.4 14.1 39 371-409 113-155 (351)
366 PRK10869 recombination and rep 56.4 1.9E+02 0.0041 31.6 12.8 59 351-409 170-234 (553)
367 PF04871 Uso1_p115_C: Uso1 / p 56.4 1.5E+02 0.0032 26.9 10.2 20 347-366 29-48 (136)
368 PF15070 GOLGA2L5: Putative go 56.4 1.1E+02 0.0024 34.2 11.2 49 344-392 166-214 (617)
369 PF10212 TTKRSYEDQ: Predicted 56.3 1.6E+02 0.0034 32.7 12.1 44 350-393 432-475 (518)
370 PTZ00454 26S protease regulato 56.2 35 0.00076 35.7 7.1 32 350-381 27-58 (398)
371 PF02841 GBP_C: Guanylate-bind 56.1 2.2E+02 0.0047 28.4 14.4 29 344-372 221-249 (297)
372 PF12128 DUF3584: Protein of u 56.1 1.6E+02 0.0035 35.1 13.0 52 324-375 785-839 (1201)
373 KOG0933 Structural maintenance 56.0 2.5E+02 0.0055 33.8 14.1 16 172-187 617-632 (1174)
374 KOG4370 Ral-GTPase effector RL 55.9 37 0.0008 36.9 7.2 47 363-415 410-456 (514)
375 PF04136 Sec34: Sec34-like fam 55.8 1.6E+02 0.0035 27.1 10.5 59 347-405 23-81 (157)
376 PF01486 K-box: K-box region; 55.7 45 0.00097 28.0 6.4 23 346-368 76-98 (100)
377 PRK03992 proteasome-activating 55.6 45 0.00097 34.4 7.7 41 349-389 5-45 (389)
378 PRK14154 heat shock protein Gr 55.5 90 0.0019 30.6 9.2 13 348-360 62-74 (208)
379 PF13747 DUF4164: Domain of un 55.3 1.3E+02 0.0028 25.5 10.2 31 363-393 36-66 (89)
380 PF04129 Vps52: Vps52 / Sac2 f 55.0 1.6E+02 0.0035 31.8 11.9 36 345-380 28-63 (508)
381 COG3879 Uncharacterized protei 55.0 87 0.0019 31.6 9.2 55 330-386 30-84 (247)
382 PRK05255 hypothetical protein; 55.0 1.3E+02 0.0029 28.6 10.0 24 331-354 60-83 (171)
383 PHA03162 hypothetical protein; 54.9 43 0.00093 31.0 6.5 22 368-389 15-36 (135)
384 PF04880 NUDE_C: NUDE protein, 54.8 21 0.00046 33.7 4.8 22 368-389 26-47 (166)
385 PRK00736 hypothetical protein; 54.8 89 0.0019 25.3 7.7 40 350-389 3-42 (68)
386 TIGR03007 pepcterm_ChnLen poly 54.8 2.8E+02 0.006 29.1 13.6 49 345-393 175-231 (498)
387 PF03961 DUF342: Protein of un 54.6 93 0.002 32.7 9.9 27 364-390 373-399 (451)
388 KOG3091 Nuclear pore complex, 54.5 91 0.002 34.3 9.9 34 346-379 356-389 (508)
389 PRK00409 recombination and DNA 54.2 3.9E+02 0.0085 30.7 15.3 8 325-332 517-524 (782)
390 KOG0995 Centromere-associated 54.2 1E+02 0.0022 34.6 10.2 29 353-381 295-323 (581)
391 TIGR03495 phage_LysB phage lys 54.1 1.8E+02 0.0039 26.8 10.5 17 394-410 62-78 (135)
392 PF09325 Vps5: Vps5 C terminal 54.0 1.9E+02 0.004 26.9 12.9 58 334-394 138-202 (236)
393 PF07889 DUF1664: Protein of u 53.9 1.4E+02 0.0031 27.1 9.6 54 342-395 65-118 (126)
394 cd07429 Cby_like Chibby, a nuc 53.5 31 0.00066 30.7 5.2 23 350-372 77-99 (108)
395 cd07667 BAR_SNX30 The Bin/Amph 53.4 2.5E+02 0.0054 28.1 12.1 64 338-404 153-218 (240)
396 COG0172 SerS Seryl-tRNA synthe 53.2 1.3E+02 0.0028 32.5 10.7 45 351-395 42-90 (429)
397 PRK14154 heat shock protein Gr 53.2 1E+02 0.0022 30.2 9.2 24 347-370 68-91 (208)
398 PRK10963 hypothetical protein; 53.2 60 0.0013 31.2 7.6 44 347-394 39-82 (223)
399 PRK03992 proteasome-activating 53.2 43 0.00094 34.5 7.1 40 347-386 10-49 (389)
400 PHA03155 hypothetical protein; 53.1 57 0.0012 29.5 6.8 24 368-391 10-33 (115)
401 PRK10929 putative mechanosensi 52.9 3.3E+02 0.0071 32.9 14.7 36 359-394 265-300 (1109)
402 PRK13182 racA polar chromosome 52.8 74 0.0016 30.1 8.0 14 381-394 126-139 (175)
403 PF14645 Chibby: Chibby family 52.7 62 0.0014 28.8 7.1 22 351-372 77-98 (116)
404 KOG0979 Structural maintenance 52.6 2E+02 0.0044 34.4 12.7 37 325-361 640-677 (1072)
405 KOG3564 GTPase-activating prot 52.6 1.6E+02 0.0035 32.8 11.3 65 333-397 34-101 (604)
406 TIGR02231 conserved hypothetic 52.4 3.2E+02 0.0068 29.3 13.5 24 366-389 138-161 (525)
407 PF13935 Ead_Ea22: Ead/Ea22-li 52.3 1.8E+02 0.0039 26.2 10.1 25 322-353 65-89 (139)
408 KOG1853 LIS1-interacting prote 52.3 2.9E+02 0.0063 28.6 14.1 42 328-369 28-69 (333)
409 PF02403 Seryl_tRNA_N: Seryl-t 52.3 1.4E+02 0.0031 25.0 10.1 50 331-380 9-64 (108)
410 PRK11147 ABC transporter ATPas 52.2 53 0.0011 35.9 7.9 46 347-392 570-621 (635)
411 TIGR02680 conserved hypothetic 52.2 3.5E+02 0.0075 33.0 15.1 6 409-414 984-989 (1353)
412 KOG2891 Surface glycoprotein [ 52.0 3.1E+02 0.0067 28.9 14.5 25 334-358 351-375 (445)
413 KOG0639 Transducin-like enhanc 52.0 1.4E+02 0.003 33.5 10.8 38 339-376 24-61 (705)
414 PF10376 Mei5: Double-strand r 51.9 1.4E+02 0.003 29.4 9.9 13 408-420 201-213 (221)
415 PRK14139 heat shock protein Gr 51.9 1.3E+02 0.0027 29.0 9.4 10 349-358 43-52 (185)
416 PF05701 WEMBL: Weak chloropla 51.4 3.6E+02 0.0077 29.4 15.9 70 330-399 349-419 (522)
417 KOG2856 Adaptor protein PACSIN 51.4 3.5E+02 0.0076 29.4 13.2 59 355-416 180-241 (472)
418 KOG2483 Upstream transcription 51.3 36 0.00078 33.8 5.9 26 341-366 101-126 (232)
419 PF13874 Nup54: Nucleoporin co 51.3 1.2E+02 0.0026 27.2 8.8 31 364-394 91-121 (141)
420 PF10205 KLRAQ: Predicted coil 51.2 1.3E+02 0.0028 26.7 8.6 52 344-395 18-69 (102)
421 PF15556 Zwint: ZW10 interacto 51.1 2.7E+02 0.0058 28.0 11.6 29 378-406 153-182 (252)
422 cd00632 Prefoldin_beta Prefold 50.8 63 0.0014 27.4 6.6 41 344-384 62-102 (105)
423 TIGR02977 phageshock_pspA phag 50.7 2.3E+02 0.0051 27.1 14.5 30 363-392 103-132 (219)
424 TIGR02231 conserved hypothetic 50.6 2E+02 0.0044 30.7 11.8 31 363-393 128-158 (525)
425 KOG2072 Translation initiation 50.5 3.8E+02 0.0083 31.7 14.2 25 370-394 667-691 (988)
426 PF10883 DUF2681: Protein of u 50.3 80 0.0017 27.2 7.0 56 364-419 21-79 (87)
427 KOG2129 Uncharacterized conser 50.3 48 0.001 36.0 6.9 22 346-367 65-86 (552)
428 PF12128 DUF3584: Protein of u 50.2 5.3E+02 0.011 31.0 16.0 14 174-187 581-594 (1201)
429 COG1322 Predicted nuclease of 50.1 2.1E+02 0.0045 31.1 11.7 51 336-386 61-111 (448)
430 PF06008 Laminin_I: Laminin Do 50.1 2.2E+02 0.0049 27.7 11.1 90 325-414 1-94 (264)
431 PF02050 FliJ: Flagellar FliJ 50.1 1.3E+02 0.0029 24.1 12.5 7 349-355 56-62 (123)
432 PF07200 Mod_r: Modifier of ru 50.1 1.8E+02 0.004 25.7 12.8 20 311-331 5-24 (150)
433 PRK01156 chromosome segregatio 50.0 2.9E+02 0.0063 31.4 13.4 6 66-71 68-73 (895)
434 PTZ00454 26S protease regulato 49.8 62 0.0013 33.9 7.7 42 351-392 21-62 (398)
435 TIGR03007 pepcterm_ChnLen poly 49.7 3.3E+02 0.0072 28.6 13.7 58 347-404 312-372 (498)
436 KOG0994 Extracellular matrix g 49.7 3.2E+02 0.0069 33.8 13.6 27 367-393 1690-1716(1758)
437 PF10482 CtIP_N: Tumour-suppre 49.5 2.1E+02 0.0045 26.2 11.5 45 348-392 17-61 (120)
438 PF09787 Golgin_A5: Golgin sub 49.4 3.6E+02 0.0078 29.2 13.4 111 304-414 211-346 (511)
439 KOG0964 Structural maintenance 49.3 3.9E+02 0.0084 32.3 14.2 114 302-418 387-509 (1200)
440 KOG4378 Nuclear protein COP1 [ 49.3 1.1E+02 0.0023 34.3 9.4 67 328-394 587-664 (673)
441 PF14282 FlxA: FlxA-like prote 49.1 95 0.0021 26.8 7.5 12 349-360 23-34 (106)
442 PF14817 HAUS5: HAUS augmin-li 49.0 3.1E+02 0.0067 31.1 13.1 55 334-388 75-129 (632)
443 COG4372 Uncharacterized protei 48.9 3.7E+02 0.0081 29.4 13.1 50 337-386 129-178 (499)
444 KOG0483 Transcription factor H 48.8 30 0.00064 33.5 4.8 56 321-391 89-144 (198)
445 PF04012 PspA_IM30: PspA/IM30 48.7 2.4E+02 0.0051 26.6 12.9 40 350-389 96-135 (221)
446 PF14932 HAUS-augmin3: HAUS au 48.3 2.8E+02 0.0061 27.3 11.9 43 345-387 68-110 (256)
447 COG2919 Septum formation initi 48.0 86 0.0019 27.5 7.1 32 364-395 48-79 (117)
448 PRK15396 murein lipoprotein; P 47.8 1.4E+02 0.003 25.2 7.9 43 347-389 27-69 (78)
449 PF05278 PEARLI-4: Arabidopsis 47.7 2.6E+02 0.0056 28.6 11.3 43 347-389 209-251 (269)
450 KOG1854 Mitochondrial inner me 47.6 2.3E+02 0.0049 32.3 11.8 94 322-415 195-296 (657)
451 PF07061 Swi5: Swi5; InterPro 47.5 1.4E+02 0.003 25.2 8.0 20 346-365 8-27 (83)
452 KOG1655 Protein involved in va 47.5 1.7E+02 0.0036 29.1 9.6 20 372-391 103-122 (218)
453 KOG2077 JNK/SAPK-associated pr 47.4 2.7E+02 0.0057 31.9 12.1 89 309-399 322-425 (832)
454 PF05812 Herpes_BLRF2: Herpesv 47.4 73 0.0016 28.9 6.7 24 368-391 5-28 (118)
455 TIGR00414 serS seryl-tRNA synt 47.3 3.7E+02 0.008 28.4 13.6 54 322-378 10-63 (418)
456 PF09731 Mitofilin: Mitochondr 47.2 4E+02 0.0087 28.8 15.0 18 315-332 267-284 (582)
457 KOG4360 Uncharacterized coiled 47.0 1.7E+02 0.0036 32.8 10.4 45 349-393 209-253 (596)
458 PF05010 TACC: Transforming ac 47.0 2.4E+02 0.0052 27.6 10.6 38 345-382 23-60 (207)
459 PF10212 TTKRSYEDQ: Predicted 46.8 2.5E+02 0.0053 31.3 11.7 40 351-393 454-493 (518)
460 PRK03947 prefoldin subunit alp 46.7 94 0.002 27.4 7.3 41 353-393 7-47 (140)
461 KOG4001 Axonemal dynein light 46.6 3.2E+02 0.007 27.5 12.0 19 246-264 121-139 (259)
462 PRK11281 hypothetical protein; 46.5 6.1E+02 0.013 30.7 16.1 112 303-419 209-346 (1113)
463 PF10267 Tmemb_cc2: Predicted 46.3 2.9E+02 0.0063 29.6 11.9 16 358-373 275-290 (395)
464 PF13879 KIAA1430: KIAA1430 ho 46.0 1.5E+02 0.0032 24.1 7.9 21 352-372 36-56 (98)
465 PF14988 DUF4515: Domain of un 45.6 2.9E+02 0.0063 26.7 11.5 46 347-392 49-97 (206)
466 PF04751 DUF615: Protein of un 45.6 2.2E+02 0.0048 26.6 9.8 45 301-354 28-72 (157)
467 PF12999 PRKCSH-like: Glucosid 45.4 1E+02 0.0022 29.6 7.7 17 377-393 157-173 (176)
468 PRK03947 prefoldin subunit alp 45.4 1E+02 0.0023 27.1 7.4 9 350-358 106-114 (140)
469 TIGR02680 conserved hypothetic 45.4 5.4E+02 0.012 31.5 15.2 60 333-393 265-324 (1353)
470 PF10498 IFT57: Intra-flagella 45.3 3.9E+02 0.0084 28.1 12.6 78 326-412 243-320 (359)
471 PF14916 CCDC92: Coiled-coil d 45.3 41 0.00088 27.2 4.3 43 344-389 2-44 (60)
472 PF11500 Cut12: Spindle pole b 45.2 1.7E+02 0.0036 27.6 8.9 55 323-377 83-137 (152)
473 KOG1850 Myosin-like coiled-coi 45.2 4.1E+02 0.0089 28.3 14.9 108 306-419 69-178 (391)
474 PF10234 Cluap1: Clusterin-ass 45.2 3E+02 0.0066 28.0 11.3 69 344-412 168-244 (267)
475 PF07795 DUF1635: Protein of u 45.1 1.4E+02 0.0029 29.7 8.7 52 341-392 7-59 (214)
476 cd04776 HTH_GnyR Helix-Turn-He 45.0 1.9E+02 0.0042 25.1 8.8 79 301-380 37-115 (118)
477 PF10267 Tmemb_cc2: Predicted 45.0 2E+02 0.0043 30.8 10.4 66 344-419 218-283 (395)
478 PF09766 FimP: Fms-interacting 45.0 1.7E+02 0.0038 30.3 9.9 60 351-410 90-152 (355)
479 PF09789 DUF2353: Uncharacteri 44.9 1.3E+02 0.0028 31.4 8.8 64 330-393 35-113 (319)
480 KOG0239 Kinesin (KAR3 subfamil 44.9 3.4E+02 0.0075 30.8 12.8 86 324-409 227-312 (670)
481 TIGR01554 major_cap_HK97 phage 44.9 1.5E+02 0.0033 30.1 9.4 67 347-413 1-67 (378)
482 KOG2010 Double stranded RNA bi 44.8 90 0.0019 33.1 7.7 50 353-402 148-198 (405)
483 PF10168 Nup88: Nuclear pore c 44.7 2.5E+02 0.0054 32.1 11.8 87 326-412 553-640 (717)
484 PRK14159 heat shock protein Gr 44.7 2.8E+02 0.006 26.5 10.4 79 341-420 3-92 (176)
485 PF04420 CHD5: CHD5-like prote 44.7 55 0.0012 30.2 5.7 50 342-391 37-91 (161)
486 PRK06800 fliH flagellar assemb 44.6 2.5E+02 0.0054 27.9 10.2 66 348-413 34-99 (228)
487 PRK14145 heat shock protein Gr 44.6 1.7E+02 0.0037 28.4 9.2 65 348-418 41-105 (196)
488 PF08581 Tup_N: Tup N-terminal 44.5 1.9E+02 0.0041 24.3 11.7 69 342-417 1-69 (79)
489 PF14661 HAUS6_N: HAUS augmin- 44.5 3E+02 0.0065 26.9 11.0 112 301-416 117-239 (247)
490 TIGR00570 cdk7 CDK-activating 44.4 3.1E+02 0.0067 28.6 11.4 72 347-418 115-187 (309)
491 PRK14872 rod shape-determining 44.4 1.3E+02 0.0028 31.5 8.8 62 346-407 32-98 (337)
492 smart00806 AIP3 Actin interact 44.3 3.5E+02 0.0076 29.4 12.2 88 331-419 203-301 (426)
493 KOG3192 Mitochondrial J-type c 44.2 1.2E+02 0.0026 29.0 7.9 110 310-419 22-152 (168)
494 PRK14162 heat shock protein Gr 44.1 2E+02 0.0044 27.8 9.6 61 352-418 39-99 (194)
495 PF05008 V-SNARE: Vesicle tran 43.9 1.3E+02 0.0027 23.9 7.0 53 343-395 23-76 (79)
496 PF11853 DUF3373: Protein of u 43.9 23 0.00049 38.6 3.5 42 354-396 20-61 (489)
497 PRK14140 heat shock protein Gr 43.6 2.1E+02 0.0046 27.6 9.6 58 345-402 37-94 (191)
498 TIGR00634 recN DNA repair prot 43.6 3.5E+02 0.0076 29.4 12.4 89 322-417 299-391 (563)
499 PRK14153 heat shock protein Gr 43.5 1.3E+02 0.0029 29.1 8.2 62 351-418 32-93 (194)
500 PF12808 Mto2_bdg: Micro-tubul 43.4 68 0.0015 25.2 5.1 48 345-392 1-48 (52)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.41 E-value=1.2e-12 Score=101.81 Aligned_cols=63 Identities=37% Similarity=0.493 Sum_probs=58.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
.|+|+.||+++||+||+++|+||+.|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999888888877653
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.28 E-value=2.9e-11 Score=93.98 Aligned_cols=62 Identities=37% Similarity=0.518 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
+.|+.+|+++||+||+++|+||+.|+.+||.+|..|+.+|..|..++..|..++..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999999999999999999999999999999999888873
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.27 E-value=3.9e-11 Score=116.29 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
-++|-.||+|+||.+||.+|.|||+.++++|..|..|..||..|..+...|++.++.|+.+|+||..+|+.+.|
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~ 139 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQ 139 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999865443
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.11 E-value=1.1e-10 Score=122.80 Aligned_cols=64 Identities=30% Similarity=0.463 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
-||..|||+||+||+.||+|||+|+.-||.+++.|..||..|+++...|.++...|..||.+||
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3677799999999999999999999999999999999999999999999999999999999996
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.05 E-value=8.4e-10 Score=83.67 Aligned_cols=53 Identities=38% Similarity=0.527 Sum_probs=48.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
.|+++.||. +||++|+++|+||+.|+.+||.+|..|+.+|..|..++..|+.+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357788888 99999999999999999999999999999999999999888754
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.95 E-value=8.7e-10 Score=114.48 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.-||+||+|+|.+|||.||+|||+||+.||.+|....+||.+|..++..|+.+|..|..+.+.|...+
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999998877665443
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.75 E-value=1.4e-08 Score=100.91 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
..||.-|++||||+|+..|+|||+|+..||.+|..|+++|..|-++|..|..
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999988887754
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.14 E-value=3.2e-08 Score=82.43 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=54.4
Q ss_pred HHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 303 ~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
-.|.++.+ ..|.+--..+-|.+||.++||.+|+.+|.||+.++.+||..+..|+.+...|..++..++.+...+.
T Consensus 11 v~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 11 VREFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655 3333222345689999999999999999999999999999998888777666666666555444433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.71 E-value=0.00013 Score=72.27 Aligned_cols=47 Identities=34% Similarity=0.529 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 329 iLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
-++||++|.++|+||.++|..||.+|..|..+|..|...+..|.+..
T Consensus 211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 58999999999999999999999999999999988887776654433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.36 E-value=0.0012 Score=66.14 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=46.0
Q ss_pred cChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILA-NRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 321 ~DpKR~RRiLk-NRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
+++|+.||+-. |..+|.|-|+||++-.++|+.+++.|+.+|.+|+.|+..|+++++.|
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665544 44569999999999999999999999999999998888776655443
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.20 E-value=0.0037 Score=56.59 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=51.7
Q ss_pred CHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 302 s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
|-.|+++-+-.-.-.|+ +-.|..||-|+||=.|+-.|-|....-.+||.+-..|+.|..+|..+ +..+..|
T Consensus 33 SVReLNr~LrG~~reEV--vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E 103 (135)
T KOG4196|consen 33 SVRELNRHLRGLSREEV--VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEE-------NSRLRRE 103 (135)
T ss_pred hHHHHHHHhcCCCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 44566553332222233 34788899999999999999999998888887666655554444444 4444444
Q ss_pred HHHHHHHHHHH
Q 014471 382 IAEFLIVLLPF 392 (424)
Q Consensus 382 N~ELK~RLqaL 392 (424)
...+|.+.+++
T Consensus 104 ~da~k~k~e~l 114 (135)
T KOG4196|consen 104 LDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHH
Confidence 44455444433
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.02 E-value=0.014 Score=47.78 Aligned_cols=64 Identities=19% Similarity=0.067 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFVFLTL 408 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ealta 408 (424)
+-++.||.||+.+-..++.|..++..|+.++..|..+|.+|+...+.+.+ +..+.++|.-.+..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999988888888888888877764 55566666555544
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.72 E-value=0.0089 Score=58.93 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=49.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
.|++-.-|.-+|=++|++||.+.|.-..+..++|..|+.||..|+.+|..|++++..|..
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555688999999999999999999999999999999999988887777666543
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.69 E-value=0.0078 Score=52.87 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.+..||.++..|..+...|+.++..|..+|+.|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999999999998743
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.59 E-value=0.011 Score=51.62 Aligned_cols=50 Identities=22% Similarity=0.141 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..|.+||.++..|..+...|+.++..|..+|+.|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999988866
No 16
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.20 E-value=0.011 Score=64.41 Aligned_cols=79 Identities=27% Similarity=0.264 Sum_probs=55.5
Q ss_pred hhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 309 IWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 309 i~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.++.-+|.|.-+.=-+-+||.=+||.+||+.|+||..-|..||..|..|+.|-.+|..+ ...+..+..++|++
T Consensus 475 ~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 475 MLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQ 547 (604)
T ss_pred HHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33444444322323455678889999999999999999999999999999887776654 33345556666666
Q ss_pred HHHHHH
Q 014471 389 LLPFLI 394 (424)
Q Consensus 389 LqaLEQ 394 (424)
|..|-+
T Consensus 548 ls~L~~ 553 (604)
T KOG3863|consen 548 LSELYQ 553 (604)
T ss_pred HHHHHH
Confidence 666554
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.61 E-value=0.15 Score=50.70 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=67.6
Q ss_pred hcChHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 320 LSDPKRAKRILANRQS--AARSKERKMRY-ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 320 l~DpKR~RRiLkNRES--AqRSReRKK~Y-ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
..+-||+|--.+-.-+ -++.|+-+++| |.+|+.+-+.|+.||..|+++...|-.+++.|..+..+|++.|-.+.|++
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 4567777743333222 12345556666 67999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 014471 397 ILIVHLFV 404 (424)
Q Consensus 397 qLrd~L~e 404 (424)
|....+++
T Consensus 149 ~~~~~v~e 156 (292)
T KOG4005|consen 149 QHNTRVIE 156 (292)
T ss_pred HHhhHHHh
Confidence 87766655
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.20 E-value=0.17 Score=47.39 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQ---KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA-ILIVHLFVFLTLFF 410 (424)
Q Consensus 341 eRKK~YieELE~---KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa-qLrd~L~ealta~f 410 (424)
.-=..|+..|.. ..+.++.||..|..++..|+.++..|..||..|+.+++.+++.= .|...+..|-+-++
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333456666665 47788899999999999999999999999999999998887643 23334444444333
No 19
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.07 E-value=0.075 Score=47.12 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP--FLIR 395 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa--LEQq 395 (424)
.+.+||.++.+|-.|...|++++..|-.+|..|..||..|+.||.. +|..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~ 60 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKT 60 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccch
Confidence 4688999999999999999999999999999999999999999987 5543
No 20
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.88 E-value=0.57 Score=43.75 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+.++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..++.....|..||.+|-.|.-.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666677778888888899999999999999999999999999999999888643
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.56 E-value=0.25 Score=40.05 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
|+.|=..++.|+.||..|++++..++.+...|...|..-+.||++|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666666666666554
No 22
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.53 E-value=0.17 Score=40.54 Aligned_cols=51 Identities=24% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
..|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999888743
No 23
>PRK00295 hypothetical protein; Provisional
Probab=94.49 E-value=0.27 Score=39.66 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999999999999999988887765
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.41 E-value=0.9 Score=48.21 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA-ILIVHL 402 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa-qLrd~L 402 (424)
|+++.+-++=+.-.++....+.....||..++.++++..++..++...+.+...+...+.++..+|+.++.|. .-+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666555554444445555666778999999999999999999999999999999999999999999988665 555566
Q ss_pred HHHHHHHH
Q 014471 403 FVFLTLFF 410 (424)
Q Consensus 403 ~ealta~f 410 (424)
.+.+.+++
T Consensus 118 a~~L~A~~ 125 (420)
T COG4942 118 AEQLAALQ 125 (420)
T ss_pred HHHHHHHH
Confidence 66555544
No 25
>PRK00736 hypothetical protein; Provisional
Probab=94.35 E-value=0.26 Score=39.69 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+|.+||.++..++.-..+|...|..-+++...|..+...|..||..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999988887764
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.35 E-value=0.72 Score=38.90 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
+-++.||.||+..-..++-|.-+|..|..++..|..|+..
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888876666555655666665555555555544
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.21 E-value=2.9 Score=38.39 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
=++-+.....|++.|-.--+-+++.+..|+.++..+..+...|...+..+..+...|..+..+.+.++..|+..
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667889999999999999999999999999999999999999999999999999999999999888863
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=94.17 E-value=0.29 Score=39.88 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.|.+||.++..++.-..+|...|...+++...|..+.+.|..||..++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999888877653
No 29
>PRK04325 hypothetical protein; Provisional
Probab=94.13 E-value=0.29 Score=40.03 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.|.+||.++..++.-..+|...|..-+++...|..+.+.|..||..++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999999999999999988888887764
No 30
>PRK04406 hypothetical protein; Provisional
Probab=93.88 E-value=0.34 Score=39.92 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
..|.+||.++..++.-..+|...|...+++...|..+.+.|+.||..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999888888887664
No 31
>PRK02119 hypothetical protein; Provisional
Probab=93.88 E-value=0.35 Score=39.54 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
-..|.+||.++..++.-..+|...|..-+++...|..+.+.|..||..++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999998888887664
No 32
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.87 E-value=3.1 Score=37.09 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 325 R~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
...|=+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+...+..
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666666666666666666666666665555554433
No 33
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.86 E-value=0.55 Score=39.44 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
++|..++..||.....|..++..++.++..|..||.-|...|..|-..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999999999999999887443
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.82 E-value=3.1 Score=41.28 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..+..|+..+++++.+..+|..++..|..+...|..+...|+.++..++.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666665554
No 35
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.79 E-value=1.3 Score=37.38 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+|+.+.|.+=+++-..|--+..-..+||.+|+.|...-..|-.++.....+...|+.-|.|+..+|..
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777799999999999999999999999999999999999999999964
No 36
>PHA03155 hypothetical protein; Provisional
Probab=93.70 E-value=0.55 Score=41.99 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTIL-----------QVSIAELILPIAEFLIVLLPFL-IRAILIVHLFVFLTLFFFRE 413 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~L-----------qren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~ealta~f~rE 413 (424)
-++||+.+++.|+.||..|+.++..- |++. .+..--..|- -++++ -.++++..+..+.|.--..|
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea-~I~s~v~~Lt--~~A~~KIe~kVrk~~~~~vTk~q~~~ 85 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDA-IINSLVNKLT--KKAEEKIRERVLKDLLPLVSKNQCME 85 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 37899999999999999999988431 1111 1111111121 12222 23455555666777777778
Q ss_pred HHhhhhcc
Q 014471 414 ILRGLQVR 421 (424)
Q Consensus 414 I~~~lq~R 421 (424)
++..+.||
T Consensus 86 al~~lt~R 93 (115)
T PHA03155 86 AIADIKYR 93 (115)
T ss_pred HHhcCeee
Confidence 88888887
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.63 E-value=0.88 Score=43.78 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
++-+.+++..+..|+.+|.+|.++++.++.++..|..+|..++..
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666666666666666666666655555555543
No 38
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.54 E-value=0.98 Score=36.71 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..||.||..|-.....|..++..|..+...+..|+..|..+++.-.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888877665443
No 39
>PHA03162 hypothetical protein; Provisional
Probab=93.42 E-value=0.26 Score=44.95 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHH-----HHH--HHHH-HHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ-VS----IAELILPIAEFL-----IVL--LPFL-IRAILIVHLFVFLTL 408 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq-re----n~~L~~EN~ELK-----~RL--qaLE-QqaqLrd~L~ealta 408 (424)
+|+.-++||+.+++.|+.||..|+.+|..-- -. -..|....+|.. .+| ++++ -.++++..+..+.|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~~t~~~vTk 89 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRHETLKATTK 89 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 4556689999999999999999999983310 00 001222222211 111 1222 244555555566666
Q ss_pred HHHHHHHhhhhcc
Q 014471 409 FFFREILRGLQVR 421 (424)
Q Consensus 409 ~f~rEI~~~lq~R 421 (424)
--+.|++..+-||
T Consensus 90 ~e~e~aL~~lt~R 102 (135)
T PHA03162 90 EEFEAAIANIRFR 102 (135)
T ss_pred HHHHHHHhcCeee
Confidence 6677777777777
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.33 E-value=1.1 Score=49.96 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.-+-+..+.++|+.|..+|+.++...+.++..|+.|..+|+..
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666777777777777777777777777777777666543
No 41
>PRK00846 hypothetical protein; Provisional
Probab=93.30 E-value=0.52 Score=39.37 Aligned_cols=50 Identities=20% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
..+|.+||.++...+.-..+|...+...++....|..+.+.|+.||..++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999988876
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.30 E-value=3.9 Score=39.48 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
|+.++..|+.|...|..++..+++....+..+..+|+.++..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444433
No 43
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.04 E-value=0.65 Score=38.10 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.+=..+..|+.|+..|+.+...|..++..|..||..|+....
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555554433
No 44
>PRK09039 hypothetical protein; Validated
Probab=93.02 E-value=3.3 Score=42.37 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|+.++..++.+.++...++..|+++...|..+...|...|.+.|
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555544
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.95 E-value=3.1 Score=40.05 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILI 399 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLr 399 (424)
+...+|..+++.+..+..+|..++..|++++..+..|+..|+.+++.+....+++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777777777777777777777777776666666665544433
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=0.89 Score=37.96 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..|..+|.+|..++..++.....|..||..||
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555555554
No 47
>PRK11637 AmiB activator; Provisional
Probab=92.86 E-value=3.2 Score=42.97 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
-...+..|+.++..++.+...+..++..++.+...|..+..+++.+|..
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555443
No 48
>PRK11637 AmiB activator; Provisional
Probab=92.76 E-value=3.7 Score=42.53 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
..+|+...+.++.+..+|..+....+.....|..+..++...|..++
T Consensus 193 ~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 193 QSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433334444444444444444443
No 49
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.73 E-value=6.9 Score=34.89 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
.|+|=+.+.++|+.++..+..++..|...+..|+.++..+..+..
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333333
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.64 E-value=0.48 Score=50.84 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
-..+||+++..|+.|...|.++...++++...|+.||+.|+.++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34699999999999999999999999999999999999999888543
No 51
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.46 E-value=0.87 Score=39.84 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFL 406 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~eal 406 (424)
+|=.++..|+.....|..++..|+.+...|..||.+|+.+. .+||+.|.+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN------~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN------EHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence 56677888999999999999999999999999999999888 45555555543
No 52
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=92.29 E-value=2.1 Score=35.31 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIA--------ELILPIAEFLIVLLPFLIRAILI 399 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~--------~L~~EN~ELK~RLqaLEQqaqLr 399 (424)
+-+.|..+..|+.||-.|+-+|-.|+.... .+..||-+||..+..|...-+-.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~ 62 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK 62 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988887655 56788889998888877654433
No 53
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.07 E-value=3.1 Score=43.48 Aligned_cols=52 Identities=21% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
=.|-+..+..||.-+..+..||..|..|+..+++++...+.|+.+|..+|..
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999998888888888666543
No 54
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=92.00 E-value=1.3 Score=39.76 Aligned_cols=79 Identities=23% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----HHH--HHHH-HHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQV-----SIAELILPIAEFL-----IVL--LPFL-IRAILIVHLFVFLTLF 409 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr-----en~~L~~EN~ELK-----~RL--qaLE-QqaqLrd~L~ealta~ 409 (424)
|..-++||+.+++.|+.||..|+.+|..--- .-..|.-..+|.. -+| ++++ -.++++..+..+.|.-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~ 80 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKE 80 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Confidence 3445799999999999999999998764321 0111222222221 111 2222 1344555555566666
Q ss_pred HHHHHHhhhhcc
Q 014471 410 FFREILRGLQVR 421 (424)
Q Consensus 410 f~rEI~~~lq~R 421 (424)
-..|++..+.||
T Consensus 81 e~~e~l~~l~~R 92 (118)
T PF05812_consen 81 EIEEALKNLTIR 92 (118)
T ss_dssp HHHHHHHT-EEE
T ss_pred HHHHHHhcceee
Confidence 677888888887
No 55
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.83 E-value=1.6 Score=42.20 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
-|++|+.--+.|..||..|...+..+...+..|..|+..|+.++.++.|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777777777777777766644
No 56
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=91.26 E-value=2.6 Score=43.49 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTE-----------ATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~E-----------N~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
--++.|++|++|...-..=+||...+.-=+..+++|..- ......++.+||++++.|..+..++..+|+
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666899999998888888866555445566666531 111236788888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 391 PFLIRAILIVHLFVFLTLFF 410 (424)
Q Consensus 391 aLEQqaqLrd~L~ealta~f 410 (424)
.+.........-+..|+.++
T Consensus 200 ~~~k~L~faqekn~LlqslL 219 (323)
T PF08537_consen 200 ITKKDLKFAQEKNALLQSLL 219 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 76555444444445666655
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.24 E-value=10 Score=36.68 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
-+..|+.++..|+..|.+|..++..++++...|..+..++
T Consensus 57 e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 57 EYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443333
No 58
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.20 E-value=0.99 Score=48.52 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSI-AELILPIAEFLIVLLPFL 393 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren-~~L~~EN~ELK~RLqaLE 393 (424)
..|+.+-+.|..||.+|+++...+..+. ..|..+..+|..+.+.+.
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK 122 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555555555555555555444433333 344555666665555544
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.09 E-value=3.8 Score=34.30 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+-++.||.||++.-.-.+-|.-++..|...+..|..|..++.....+|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 456778888876544444444444444444444444444333333333
No 60
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.82 E-value=4.6 Score=44.77 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 327 KRILANRQSAARSKERKMRYISELEQKVQTLQT------------------------EATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 327 RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~------------------------EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
.-.++|.+.-.+-...+...|.+||.++..++. .|.+|+.|+..|+..+-.|.++|
T Consensus 104 qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 104 QAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555444445667777777777666654 46778888889999888999998
Q ss_pred HHHHHHHHHHHH
Q 014471 383 AEFLIVLLPFLI 394 (424)
Q Consensus 383 ~ELK~RLqaLEQ 394 (424)
.+|+..|++-.+
T Consensus 184 ~elt~~lq~Eq~ 195 (617)
T PF15070_consen 184 MELTSALQSEQH 195 (617)
T ss_pred hHhhHHHHHHHH
Confidence 888777766443
No 61
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.81 E-value=2.1 Score=34.82 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
++-|++++...+.+|..|..+-....++....-.+|.+||.++.++.++
T Consensus 14 Ld~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 14 LDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444555444444433
No 62
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=90.79 E-value=0.38 Score=45.22 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
|+|+|.|+++--.+|.-|..+| .+...|..+++.||.++-.|.|+..+++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999888888888887 3355566666666666666666555555554
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.68 E-value=7.4 Score=42.76 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
.+++-..........-+..++.|+..+...+.++..|..+...+......|..|+.
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555554444444444433333333333
No 64
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.42 E-value=2.6 Score=36.38 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTL--SAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~L--s~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.+++.+++.++++...| +..+..|+-+...+.-+.++|..+|+.++.+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555555555 5566666666666666666666666666544
No 65
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.24 E-value=1.9 Score=38.06 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e 404 (424)
+|=.+|..|+.....|..++..|+.+...|..||.+|+... .+||+.|.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN------~~Lr~~l~~ 54 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEN------DKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 56667888888888888888888888888888888888776 445555554
No 66
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.13 E-value=5.6 Score=38.49 Aligned_cols=46 Identities=28% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.-|+.+|..|+.||.+|..+...|+.+...|..++..|+.+|=.++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5688889999999999999999999999999889999988874333
No 67
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.11 E-value=8.6 Score=45.11 Aligned_cols=64 Identities=20% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKE-----------------RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 329 iLkNRESAqRSRe-----------------RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+|+++..|+|.+. -+...|++||.+++.++.+...|.+.+...+..+..|..+...|+.+|+.
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776542 23445566666666666666666665555555555666666666666554
Q ss_pred H
Q 014471 392 F 392 (424)
Q Consensus 392 L 392 (424)
.
T Consensus 495 ~ 495 (1041)
T KOG0243|consen 495 K 495 (1041)
T ss_pred H
Confidence 3
No 68
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.93 E-value=13 Score=35.40 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~ 377 (424)
|.+-++..|....+-+..+...+.+...||.++..-..++..+..++..|++....
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34455555666666666666777777777777665544444444444333333333
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.41 E-value=19 Score=34.37 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
...+..+.+++.++..|+.+...+..++...+++...+..++...+..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555444444444444433
No 70
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.37 E-value=6 Score=35.39 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 014471 379 ILPIAEFLIVLL 390 (424)
Q Consensus 379 ~~EN~ELK~RLq 390 (424)
..+..+|..|.+
T Consensus 74 ~~el~~l~~ry~ 85 (120)
T PF12325_consen 74 EQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 71
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.35 E-value=1.2 Score=33.56 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|+.+...|+.....|..++..|..||..|+.+++.+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555566666666666666554443
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.33 E-value=13 Score=35.50 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
+-..+++.|++-+.-+.+=..-+..+..++.++..|+.|+..|..++..|+++...|...
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777677777888888888888888887777777777666543
No 73
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=4.4 Score=45.08 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+.+..|+.+|+.|+.||..|...+..+++++..|..+..+++.++.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999888888876654
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.02 E-value=3.1 Score=44.83 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIA 376 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~ 376 (424)
.+|+.+++.|..+|..|.++++.|+++..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35556666666666555555555544433
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.99 E-value=21 Score=35.53 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV---------SIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr---------en~~L~~EN~ELK~RLqaLE 393 (424)
+|-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+...+++++..++. +...|..|...++.|+.+++
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666667777777777777888888888888888888777766543 33344444444444444433
No 76
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.96 E-value=0.018 Score=59.39 Aligned_cols=61 Identities=30% Similarity=0.287 Sum_probs=53.6
Q ss_pred cChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAAR---SKERKMRYISELEQKVQTLQ-TEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqR---SReRKK~YieELE~KVq~Lq-~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
.+.|+..|..+|+.+|++ +|.||+.+..+|..+|+.|+ .++..|..++..|+.+.+.|..+
T Consensus 151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~ 215 (395)
T KOG1414|consen 151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKE 215 (395)
T ss_pred chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHH
Confidence 467899999999999999 99999999999999999999 88888888888888777666544
No 77
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=88.86 E-value=16 Score=32.37 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCHHHHhhhhchhH-HHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 301 FNDAELKKIWANEK-LAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 301 ~s~~e~KKi~~~~~-LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.|-.|++.++.++. +.+++. .--.++.+...++....+-+.=.+....++.++..+..+...+..++..|+.++..+.
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~-~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVK-SLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGG-GGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777776664 344332 2222455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 014471 380 LPIAEF 385 (424)
Q Consensus 380 ~EN~EL 385 (424)
.+-.++
T Consensus 83 ~~~~~l 88 (150)
T PF07200_consen 83 QQQDEL 88 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.57 E-value=13 Score=39.88 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
++++.++|..++.||.||++|..+.....
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567999999999999999987765533
No 79
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.54 E-value=2.4 Score=35.33 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+.|.+||.++..-+.-..+|...++..+.....+..+.+.|-.|+..++.+
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 468899999999888888999999998888888888888888888777654
No 80
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=88.41 E-value=3.9 Score=44.76 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFV 404 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~e 404 (424)
-|+.+-.....++.||..|..+|..+++....+..|+.+|+.-|+++.+ +.++.+.+.+
T Consensus 220 el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 220 ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555567788999999999999999999999999999999999875 5666666554
No 81
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.38 E-value=7.8 Score=36.24 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.|+.++..|..+...+..-+..|+-++..|..+++.+..++..+++
T Consensus 127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444445544443
No 82
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.33 E-value=7.3 Score=37.15 Aligned_cols=48 Identities=23% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+-..|.+||.++-.|+.+...+..+......++..|..+...|++.+.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444344444444444433333
No 83
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.99 E-value=2 Score=32.38 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.||+....|......|..+...|++++..|..|...|+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 488889999999999999999999999999999999988775
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.89 E-value=7.9 Score=35.19 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIA---ELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~---~L~~EN~ELK~RLqaLEQq 395 (424)
-|..|..+++.|+.+...+..++..+..... .....+..|..||+.||++
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 3444444444444444444444444333222 2222344566666666653
No 85
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=87.84 E-value=10 Score=44.51 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.++++||..+-.|+.||..|..||+.|..
T Consensus 530 ~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 530 NKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443
No 86
>PRK03918 chromosome segregation protein; Provisional
Probab=87.66 E-value=15 Score=40.95 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=3.1
Q ss_pred HHHhhhh
Q 014471 304 AELKKIW 310 (424)
Q Consensus 304 ~e~KKi~ 310 (424)
.++++++
T Consensus 145 ~~r~~~~ 151 (880)
T PRK03918 145 ESREKVV 151 (880)
T ss_pred HHHHHHH
Confidence 4444443
No 87
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.57 E-value=17 Score=40.21 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+=+.|+..++.+.+.+......|..++...+.++..|..+|.+||..|
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888888888888888888888887665
No 88
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.47 E-value=7.4 Score=33.64 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTIL--QVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~L--qren~~L~~EN~ELK~RLqaLEQqa 396 (424)
|+..++.|+.++.......+.|..++..| +.+.+.|..+..+++-++..|+.+-
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34556677777777777777777777777 7777777777777777777776654
No 89
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.42 E-value=11 Score=40.72 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.++.|+-+++.|..||+.|+..++.|...+..|..+.+.+-.+|.++..
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrl 346 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL 346 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3566778899999999999999999998888888888777777766554
No 90
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.22 E-value=15 Score=43.32 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTE 360 (424)
Q Consensus 347 ieELE~KVq~Lq~E 360 (424)
+..||++|..++.+
T Consensus 374 ~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 91
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.87 E-value=8.5 Score=39.57 Aligned_cols=61 Identities=25% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014471 348 SELEQKV---QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF-LIRAILIVHLFVFLTL 408 (424)
Q Consensus 348 eELE~KV---q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL-EQqaqLrd~L~ealta 408 (424)
++|.+|. ...+.|.+.|..|+..||+....+..||.+|...|.+. +.|.+|...|.+....
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555553 44577888999999999999999999999999999874 4577777777664433
No 92
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.86 E-value=12 Score=30.46 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP-FLIRAILIVHLFV 404 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa-LEQqaqLrd~L~e 404 (424)
.||..|..|+..+..+..++...+..+..|..|+...-.+|+. .+.-..|++.+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888888777666654 3344445544433
No 93
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.85 E-value=2.6 Score=41.71 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 336 AqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+||-|= ++...|||.++..++.++..|+.++..|+.+|..|-...+-|.
T Consensus 86 sQRDRF--R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 86 SQRDRF--RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 4455899999999999999999888888888888877666553
No 94
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.48 E-value=16 Score=32.77 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
|.++..|+.++..|..+-..+..+.-.|+.+|
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 95
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.37 E-value=5.3 Score=45.82 Aligned_cols=52 Identities=19% Similarity=0.047 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
-+.+-.-.++.|-.++..|+.||.+|.++++....+...|..++.-||.+|.
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444455566666666666666666666666666666666666666655
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.28 E-value=8.4 Score=39.08 Aligned_cols=47 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+.+++.+++.|+.|...|.+++..|+++...|..|..+|+.++..++
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554443
No 97
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.25 E-value=2.7 Score=44.35 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 333 RESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
-+.|+--|+|-.+--...|..+..+..|.+.|++++..+.+...+|..|+..||+-+..+|..
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~ 288 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEAD 288 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 367777888888888888999999999999999999999999999999999999888777754
No 98
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.20 E-value=5.1 Score=38.97 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 014471 356 TLQTEATTLSAQVTILQVSIA---ELILPIAEFLIVL 389 (424)
Q Consensus 356 ~Lq~EN~~Ls~Ql~~Lqren~---~L~~EN~ELK~RL 389 (424)
.|..||.+|++|+..|+.+.. .|..||.+|+.-|
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444443333 5566676666544
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=85.71 E-value=1.9 Score=42.93 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSI----AELILPIAEFLIVLL 390 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren----~~L~~EN~ELK~RLq 390 (424)
.+..|+.||.+|++|+..|+.+. ..|+.||.+||.-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456778888887776653333 347788888876553
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.65 E-value=23 Score=39.99 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
++...+||.+++.|+.|.....+++..|+.+...|..
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444678888888888777777777666666654443
No 101
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.50 E-value=5 Score=39.40 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+.+.++.++..|..|.+.++++++.|..|++.|+.++
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555555555554444
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.38 E-value=13 Score=37.65 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.++..|..++..+..+...++.++..++.+...+..+..+++.+++.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555554444443
No 103
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.11 E-value=17 Score=34.35 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 338 RSKERKMRYISELEQKVQTLQ 358 (424)
Q Consensus 338 RSReRKK~YieELE~KVq~Lq 358 (424)
...++...-+.+|+.++..+.
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555543
No 104
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.98 E-value=13 Score=37.51 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+.+|+..++.++.+...|-.++..++.....+..++.+++..|..+
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l 85 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 105
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.85 E-value=41 Score=32.92 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql 368 (424)
.|+.++..|+..|..|..+|
T Consensus 227 ~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhH
Confidence 33333333333333333333
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.81 E-value=22 Score=41.37 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=57.6
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 316 aElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
++-+..|..++|--+.-+...+.--++-+.-++++|.+....+.....|+..++.|......|...+.+..+++..-+
T Consensus 381 ~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~ 458 (980)
T KOG0980|consen 381 AQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAE 458 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666667777777766677676788999999888888888888888888888888887777766665433
No 107
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.64 E-value=20 Score=33.97 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
.+|+.++..|+.++..|..++..|+.....+...+.++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666555555555444443
No 108
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.59 E-value=21 Score=36.66 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=9.4
Q ss_pred HHHhhhhchhHHHHhh
Q 014471 304 AELKKIWANEKLAEIA 319 (424)
Q Consensus 304 ~e~KKi~~~~~LaElA 319 (424)
+|-|..++..-|+.|.
T Consensus 6 eEWKeGL~~~aLqKIq 21 (307)
T PF10481_consen 6 EEWKEGLPTRALQKIQ 21 (307)
T ss_pred hHHhccCCHHHHHHHH
Confidence 4556666666666544
No 109
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.43 E-value=23 Score=29.74 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQV---SIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqr---en~~L~~EN~ELK~RLqaLEQq 395 (424)
..++..|+.+-..++.++..+.. +...|..+-++|+.++..++.+
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555544 3556667777777777777654
No 110
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.23 E-value=16 Score=38.48 Aligned_cols=68 Identities=26% Similarity=0.312 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI----------AELILPIAEFLIVLLP 391 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren----------~~L~~EN~ELK~RLqa 391 (424)
++..+++.+++|.. .. =...+.+|..+...|+.+...|+++...+.++. ..|..|.++|+.+|..
T Consensus 10 n~~~v~~~l~~R~~-~~----~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (425)
T PRK05431 10 NPEAVKEALAKRGF-PL----DVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA 84 (425)
T ss_pred CHHHHHHHHHhcCC-cc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 56666777777721 00 023344444444444444444444444444333 3455566666666666
Q ss_pred HHH
Q 014471 392 FLI 394 (424)
Q Consensus 392 LEQ 394 (424)
+|+
T Consensus 85 ~~~ 87 (425)
T PRK05431 85 LEA 87 (425)
T ss_pred HHH
Confidence 554
No 111
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.22 E-value=32 Score=35.01 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 338 RSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
....+..+.+.+||.....|..|...|..+...++++-...-.+.+.++.++..+++
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~ 113 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE 113 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666665555555555666555544443
No 112
>PRK10698 phage shock protein PspA; Provisional
Probab=84.00 E-value=15 Score=35.62 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
..+..|+..+...+.....|..++..|+..+..+......|..|.++.+-+.++.+.+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD 157 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556677777777777778888888888888888888888888877777766666554
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.00 E-value=7.5 Score=39.94 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+..|.+|+.+++.+..||..|...+...+.....|..|..+|+.+..
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888887763
No 114
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=83.99 E-value=0.58 Score=40.05 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
.||+.|...+..|..+|..|..++..|+.+...+..+...|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 58888999999999999999998888888888887777777766533
No 115
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.66 E-value=16 Score=34.83 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHL 402 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L 402 (424)
...+..|+..+..++....+|..++..|++....+......|+.|.+....+.++...+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777777777777776665555554443
No 116
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.47 E-value=8 Score=43.76 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFV 404 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~e 404 (424)
.|..+|..|+.|...++..+...+.++..|...+.+|+...+.+|. ..+||+.|.+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777778888888888777777774 3444544443
No 117
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=83.47 E-value=5.3 Score=34.32 Aligned_cols=50 Identities=20% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEA-TTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN-~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.|-..=|.||..|..-. .....++..|+.++..|..||..|+.+|.....
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666665222 224556666666666666677777666655443
No 118
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.43 E-value=9.7 Score=42.12 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e 404 (424)
+..+-+++|..+|+.|..+...+..++..++.....+..+..+.+...+.+|++..++..+.+
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~ 387 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE 387 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777777777777777777777777777777777777777777766666655544
No 119
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.33 E-value=12 Score=37.51 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
++|..|++.++.|+..|..+++.|+.++..+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555444444444333333
No 120
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.29 E-value=5 Score=36.51 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQV--TILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql--~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
++.+.+|+..+..|+.|...|..++ ..|......|..|+.+|..+|+.|..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777777776665 45777888888888888888888775
No 121
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.21 E-value=17 Score=34.41 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV 400 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd 400 (424)
...++|=..++..|...|+-|+.|+......|..|..++..|+..+..+.++...++
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777778888888888888888888888888777766544444443
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=83.17 E-value=8.5 Score=29.94 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.|+.+...|..+|.+|+.++..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 123
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=82.70 E-value=8 Score=39.46 Aligned_cols=50 Identities=26% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.|+=.||-.++....|...|..|+..|+.++..+..+..+.|..|+.|.+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46667888888888888888888888888888888777777777766543
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.64 E-value=17 Score=33.12 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
...++||.+++.|+.++..+..+|..|+..+..|..+...+..+|..+.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777666666666666666655443
No 125
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=82.61 E-value=12 Score=29.75 Aligned_cols=44 Identities=27% Similarity=0.257 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
|++|...|+.|..+..+|+..+..|+.+......|-..-..||.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666655555555555555553
No 126
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.44 E-value=43 Score=34.10 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ-----------------------------VS 374 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq-----------------------------re 374 (424)
|+..-+.+.++.++.-..|-..-.+.||.-+..||.+|..|..+...+. ..
T Consensus 50 Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~ 129 (309)
T PF09728_consen 50 KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSER 129 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4444456666777666666667777888888888888888875433211 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 375 IAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 375 n~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
+..+..||..|+.+|..+-.|-.+|+.-.
T Consensus 130 ~~k~~~eN~~L~eKlK~l~eQye~rE~~~ 158 (309)
T PF09728_consen 130 NIKLREENEELREKLKSLIEQYELREEHF 158 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777766665433
No 127
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.41 E-value=8.3 Score=32.67 Aligned_cols=52 Identities=19% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLT 407 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealt 407 (424)
|--+|..|..+|..|..++..+......|..||..||... ..|.+.|.-.+.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~------~~WqerLr~LLG 74 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ------NGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3334444444444444444444444445666666665443 445555554443
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.41 E-value=5.6 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTIL 371 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~L 371 (424)
.+++.+++.|+.+|..|..++..|
T Consensus 37 ~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 37 AAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433333
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.23 E-value=12 Score=37.74 Aligned_cols=6 Identities=67% Similarity=1.248 Sum_probs=2.7
Q ss_pred HHHHhh
Q 014471 176 LFNEYM 181 (424)
Q Consensus 176 l~~~ym 181 (424)
||.+||
T Consensus 105 Lf~EY~ 110 (325)
T PF08317_consen 105 LFREYY 110 (325)
T ss_pred HHHHHH
Confidence 444444
No 130
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.16 E-value=20 Score=33.71 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV 400 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd 400 (424)
..|+..+..+......|..++..|+.....+..+...|+.+......+.++.+
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555555444444443333
No 131
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.14 E-value=25 Score=36.54 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
.|+.++..|+.+|..|..++..++.++..+..+..+
T Consensus 141 ~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~ 176 (342)
T PF06632_consen 141 RLQAENEHLQKENERLESEANKLLKQLEKFVNAKEE 176 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 132
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.09 E-value=14 Score=34.89 Aligned_cols=46 Identities=22% Similarity=0.097 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEAT------TLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 350 LE~KVq~Lq~EN~------~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
|+.=+..||.-.. .|..+...|+.++..|..+|.+|..+++.++++
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554332 233344444444444444445554444444443
No 133
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.83 E-value=22 Score=39.19 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+.|.+.+..=.+-+.+++..+..|+.|...+.+.+..|+.+...|..||..|...|+.+.
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444445566666666666666666666666666666666666665555433
No 134
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.68 E-value=8.4 Score=45.18 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
|..+.+|-||. .--.|+...+.+|+.+.+++....+.+..++..|.+....|+.||..|-.+|+.|-+
T Consensus 491 knlnk~L~~r~---~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRD---LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444555543 344577788888888888888888888888888888888888888888777776654
No 135
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.57 E-value=12 Score=29.06 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVL 389 (424)
Q Consensus 374 en~~L~~EN~ELK~RL 389 (424)
++..|..++..|+..+
T Consensus 41 en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 41 ENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.56 E-value=9.5 Score=37.61 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
-+.+|..++..|+.|+.+|+-+++.++.+...|....++|-..|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999998888887776654
No 137
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.34 E-value=33 Score=35.42 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVH 401 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~ 401 (424)
++++|-....+..+.++|...+.-+........+-..++.+...|..||--|+++|...-..+-.++.
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek 249 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999998888887777777788888899999999999999888877776666653
No 138
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=81.02 E-value=17 Score=31.47 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
..++.+...+..++..++.++..+...|.+|-.+++.+.
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~ 44 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELA 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 139
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.92 E-value=36 Score=30.39 Aligned_cols=44 Identities=30% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
++|-.+-..|.+-+..|.+|...+.+++..|..+..++...|..
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444444444444444433
No 140
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.73 E-value=55 Score=39.35 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=8.7
Q ss_pred CccccccccccC
Q 014471 251 RHCRSVSMDSYM 262 (424)
Q Consensus 251 rH~rS~S~Ds~~ 262 (424)
|..|-+.+|+.+
T Consensus 736 rr~RVvTL~G~l 747 (1293)
T KOG0996|consen 736 RRWRVVTLDGSL 747 (1293)
T ss_pred CceEEEEeccee
Confidence 334589999985
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=80.63 E-value=8.6 Score=37.92 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
+..|++|...|..|.-++.++.-++..++++...|-.+...
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555554443
No 142
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=80.52 E-value=21 Score=40.45 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQ---VTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Q---l~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
-+|.-+..||--|-|-.+.+. |.+-+.|.+.-.-|..+ .+.|+.+...|++|..+||.++.+||.+
T Consensus 128 svLteqVeaQgEKIrDLE~ci--e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCI--EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHH--HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 478889999988888777543 33333443333333333 3678888899999999999999999843
No 143
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=80.50 E-value=35 Score=33.87 Aligned_cols=70 Identities=7% Similarity=0.007 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014471 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA--ILIVHL 402 (424)
Q Consensus 325 R~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa--qLrd~L 402 (424)
-+|-.++-|+-+|..-++|.+|+.-+...-. .|..++..++.+.... ++.||..++.++++. -++..+
T Consensus 150 slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~-------~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~~k~~D~k~~~ 219 (243)
T cd07666 150 TLMGVIKRRDQIQAELDSKVEALANKKADRD-------LLKEEIEKLEDKVECA---NNALKADWERWKQNMQTDLRSAF 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888887776543223 4444555555444443 666888888877543 344444
Q ss_pred HH
Q 014471 403 FV 404 (424)
Q Consensus 403 ~e 404 (424)
++
T Consensus 220 ~~ 221 (243)
T cd07666 220 TD 221 (243)
T ss_pred HH
Confidence 44
No 144
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.46 E-value=35 Score=31.92 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL-IRAILI 399 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLr 399 (424)
..+..|+..|..++..|+.++..|....+.+..++..++ +..+|+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Confidence 366677777777888887777777766666666555444 344443
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.44 E-value=24 Score=40.86 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=7.6
Q ss_pred cCCCCCCCCCCCC
Q 014471 42 LDSLPPLSPSMSS 54 (424)
Q Consensus 42 ~dslpplsp~~~~ 54 (424)
++.++||+|-.+.
T Consensus 115 ls~~qpL~~a~p~ 127 (1118)
T KOG1029|consen 115 LSYSQPLPPAAPR 127 (1118)
T ss_pred cCcCCCCCccccc
Confidence 5666777654433
No 146
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=80.16 E-value=8.5 Score=36.55 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
=|+=.|++++.|+.+|.+|+.++..|.. ...+|..+-.++..++.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l 85 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVL 85 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888877653 23455555555554443
No 147
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=80.02 E-value=27 Score=36.73 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVS----IAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqre----n~~L~~EN~ELK~RLqaLEQq 395 (424)
|..+++.|+.|-..++.++..+... ...|..+.++|+.+|..++++
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543221 446666777777777777654
No 148
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=79.96 E-value=7.6 Score=39.41 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTI-------LQVSIAELILPIAEFLIVLLPFL--IRAILIVHLFV 404 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~-------Lqren~~L~~EN~ELK~RLqaLE--QqaqLrd~L~e 404 (424)
.+.++|.+|+.|+.-|..|.++++. +...-..+..|...+.++|.-|| |+..|..+-.+
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~ 285 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTE 285 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4568999999999999999999842 22333456777777888887776 44445444443
No 149
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.91 E-value=31 Score=40.80 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQV-TILQVSIAELILPIAEFLIVLLPFL-IRAILIVHLFVFLTLF 409 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql-~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~ealta~ 409 (424)
++..+-..+..|+.+...+.++. ..++.+...+..+.+.|+.+++.++ |.+.|++.++++.++.
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433 3333344444444444444444443 3344444444444443
No 150
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=79.90 E-value=5.1 Score=35.99 Aligned_cols=43 Identities=21% Similarity=0.050 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHL 402 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L 402 (424)
.|...|+.||..|.+++..|+.||.-|| ++..=||-+|+-..|
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk-~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK-TLASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHhc
Confidence 3455567777777777777888887666 455555555555444
No 151
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.83 E-value=0.31 Score=50.50 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLS-AQVTILQVSIA 376 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls-~Ql~~Lqren~ 376 (424)
|+++.|=+.+||.+|-++|.|||..+..|+.+...+..+|..|. .++..|+..+.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~ 338 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK 338 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence 45565557899999999999999999999999999999998888 44444444433
No 152
>PF15294 Leu_zip: Leucine zipper
Probab=79.82 E-value=6.2 Score=40.03 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
|...+..|+.||..|+.++..++.++.....|+..|+.+|..+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999888888888888876654
No 153
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.76 E-value=5.8 Score=35.27 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+|-.||.-...|++++..+.+++-.|..||+-|-+.|+.|-
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 456667777778999999999999999999999999987653
No 154
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.51 E-value=43 Score=35.43 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 014471 325 RAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI--------------LQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 325 R~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~--------------Lqren~~L~~EN~ELK~RLq 390 (424)
|+|.+..|-|--+.-|+- +++=....+.|+..|.+|..|+.. |+.-...+..||..|+.+|+
T Consensus 76 kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 556666665555544432 222233344566666666665443 44445566677777777776
Q ss_pred HHHHHH
Q 014471 391 PFLIRA 396 (424)
Q Consensus 391 aLEQqa 396 (424)
++.|++
T Consensus 152 ~l~~e~ 157 (401)
T PF06785_consen 152 ALQQEC 157 (401)
T ss_pred HHHHHH
Confidence 665544
No 155
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.48 E-value=33 Score=38.62 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+..|..++..|+.+...|..++..+++++.....++..+..+|..++..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 291 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666665555554443
No 156
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.12 E-value=63 Score=35.86 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
|....+.|..|+..|..+.+.+.
T Consensus 197 l~~~~e~l~~E~~~L~~q~~e~~ 219 (546)
T PF07888_consen 197 LTESSEELKEERESLKEQLAEAR 219 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334333333333
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.72 E-value=23 Score=36.65 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.-+-.+++.|+.+|..|+..-..++
T Consensus 44 ~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 44 ETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666554444
No 158
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.71 E-value=40 Score=31.51 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+|..+|..|+.+|..|..++..+..+...|.....+|+..+..|-
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 456666666666666666666655666667777777776666554
No 159
>PRK14160 heat shock protein GrpE; Provisional
Probab=78.41 E-value=32 Score=33.67 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.|+..+..|+.++..|..++..++.++..+.++...+|.|..
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555556666666665553
No 160
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=78.22 E-value=47 Score=39.14 Aligned_cols=64 Identities=25% Similarity=0.212 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSA-----QVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~-----Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
|=|.||+--.-+.++.-+|-+++|.+-.+|......|.. |-..+++-...+..|-+|||+.++.
T Consensus 1032 ~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~k 1100 (1189)
T KOG1265|consen 1032 RELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDK 1100 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777778888888888888887777777666543 3344445556677788888877764
No 161
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.97 E-value=3.9 Score=32.93 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.|...|+.+|..|+.++..|+.||.-||..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777888888888888888877754
No 162
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.96 E-value=42 Score=28.47 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 327 KRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 327 RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
-+|-..++.....=..|+.-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566666777777788888889999999999999999999999999999999999999987663
No 163
>PLN02678 seryl-tRNA synthetase
Probab=77.95 E-value=25 Score=37.73 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI----------AELILPIAEFLIVLLP 391 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren----------~~L~~EN~ELK~RLqa 391 (424)
++..+++.+++|-.. .+ -...+.+|..+...|+.+...|+++...+.++. ..|..+-++|+++|..
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 556667777777421 11 134444444444444444444444444443333 3455556666666666
Q ss_pred HHHH
Q 014471 392 FLIR 395 (424)
Q Consensus 392 LEQq 395 (424)
++.+
T Consensus 90 le~~ 93 (448)
T PLN02678 90 KEAE 93 (448)
T ss_pred HHHH
Confidence 6543
No 164
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.93 E-value=6.6 Score=41.13 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|...||.+|+.|..||++|+.++..||
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555553
No 165
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.48 E-value=35 Score=40.14 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
+-++.-=++|...+++|++....|..+...+..+|..|+++
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555544444443
No 166
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.37 E-value=8.9 Score=33.23 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+|.+++..+++++..|..+|.+|+.++..|.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555554444
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.28 E-value=38 Score=36.89 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 327 KRILANRQSAARSKERKMR 345 (424)
Q Consensus 327 RRiLkNRESAqRSReRKK~ 345 (424)
+..+.|=+++..+=+||+.
T Consensus 367 ~~~~~~~e~~kk~~e~k~~ 385 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQ 385 (493)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 168
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=77.27 E-value=16 Score=41.18 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-----RAILIVHLFVFLTLF 409 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-----qaqLrd~L~ealta~ 409 (424)
+-||.|+ .++.+|+.||+|. |..|+ ..|++...|+.||++|+ ++--... ...|+..|++.+-++
T Consensus 223 E~~K~~v-s~~e~i~~LQeE~--l~tQ~-kYQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYSEV 291 (980)
T KOG0447|consen 223 EQQKRKV-SDKEKIDQLQEEL--LHTQL-KYQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYSEV 291 (980)
T ss_pred HHHhhhh-hHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 4444443 5678899999875 44444 45889999999999999 5543332 334445555544443
No 169
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.27 E-value=69 Score=30.57 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS-----IAELILPIAEFLIVLL-PFLIR 395 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre-----n~~L~~EN~ELK~RLq-aLEQq 395 (424)
+.+..+|-..+-..--..--|| .+...|...+..++.++.+|..++..|-.. +..|..-+..+..-+. .++++
T Consensus 56 ~~~q~~~~~s~~~~~~vk~L~k-~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqq 134 (165)
T PF09602_consen 56 ELKQFKREFSDLYEEYVKQLRK-ATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQ 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444555555544444445555 788888888888888888888888765432 3455555555655554 46777
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 396 AILIVHLFVFLTLFF 410 (424)
Q Consensus 396 aqLrd~L~ealta~f 410 (424)
+.-|+.+++++.+.+
T Consensus 135 k~~r~e~qk~~~~yv 149 (165)
T PF09602_consen 135 KLTREEWQKVLDAYV 149 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777676666554
No 170
>PLN02320 seryl-tRNA synthetase
Probab=77.23 E-value=37 Score=37.12 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS---------IAELILPIAEFLIVLLPF 392 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre---------n~~L~~EN~ELK~RLqaL 392 (424)
++..+++.+++|-... ....+.+|..+...++.+...|+++...+.++ ...|..|-++||.+|..+
T Consensus 75 n~~~v~~~l~~R~~~~-----~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~l 149 (502)
T PLN02320 75 NKEAVAINIRNRNSNA-----NLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTL 149 (502)
T ss_pred CHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4445555555553210 03444445555444555554444444443333 345666667777777776
Q ss_pred HHH
Q 014471 393 LIR 395 (424)
Q Consensus 393 EQq 395 (424)
|++
T Consensus 150 e~~ 152 (502)
T PLN02320 150 EED 152 (502)
T ss_pred HHH
Confidence 654
No 171
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=77.05 E-value=11 Score=29.33 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..++..|+.+...|..+|.+|+.+++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444
No 172
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.04 E-value=13 Score=33.29 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e 404 (424)
++=.+|..|+....+|.+|+..|.+....|..||..|+... ..||+.|-+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lEN------e~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLEN------EKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhH------HHHHHHhCC
Confidence 44567888999999999999999999999999999998777 455555554
No 173
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.95 E-value=81 Score=38.79 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 325 RAKRILANRQSAARSKERK 343 (424)
Q Consensus 325 R~RRiLkNRESAqRSReRK 343 (424)
+++.+-+.++.|.+.+.-+
T Consensus 322 rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 322 AESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 174
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=76.43 E-value=15 Score=36.51 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.++..++..|.+++..|..++.+|+..|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 175
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=76.36 E-value=89 Score=33.83 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 332 NRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS-------IAELILPIAEFLIVLLPFLIRAI 397 (424)
Q Consensus 332 NRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre-------n~~L~~EN~ELK~RLqaLEQqaq 397 (424)
|--+|+.--.|-.+.-.+|..++..|-++-.+|.+|...|+.+ ...|..+-.+|+.|-...||+++
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~ 203 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ 203 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555555555554444443332 33444555555555555565543
No 176
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.23 E-value=14 Score=29.67 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 360 EATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 360 EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+...+..++..++++...+..||.+|+.++..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444455555555555555666666655555443
No 177
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.06 E-value=49 Score=36.69 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.+.+||.++..+......|..++..|..++..|..+...+|.+
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444443
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=75.94 E-value=34 Score=34.46 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
||.++..++.+...|..++..|......|.-|-..|+.|+..|+.
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 333344444444444444444444444444444445555544443
No 179
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.90 E-value=66 Score=29.68 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 014471 346 YISELEQKVQTL 357 (424)
Q Consensus 346 YieELE~KVq~L 357 (424)
+|..||+.+...
T Consensus 25 ~v~~LEreLe~~ 36 (140)
T PF10473_consen 25 HVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.86 E-value=41 Score=34.42 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
++..|..++..+..++.....++..++.+...+.....+.+.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k 248 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555444444444444
No 181
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=75.78 E-value=27 Score=37.98 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQVR 421 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~lq~R 421 (424)
..+|++-|-..+++.......+...+..++++...+..+..+|.-+|..+-+++ +.++..+|.+|-+-+.=|
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~T-------r~Lq~~iE~~ISk~y~gR 501 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERT-------RELQKQIEADISKRYKGR 501 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCC
Confidence 357888888888888888888888888888888888888888888887766554 567778888887655434
No 182
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=75.66 E-value=14 Score=35.58 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
+..|+.+-..+-.++-.++..+..|..|..+||.
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444333333
No 183
>COG5293 Predicted ATPase [General function prediction only]
Probab=75.36 E-value=61 Score=35.68 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 326 AKRILANRQSAARSKERKM-RYISELEQKVQTLQTEATTLS---------AQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 326 ~RRiLkNRESAqRSReRKK-~YieELE~KVq~Lq~EN~~Ls---------~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
-|+|..||-+--.+.-.|. .-+.+++.+++.|..+-.++. ++.+.|+++...+..|..+|..|++.+.+-
T Consensus 329 ~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~ 408 (591)
T COG5293 329 NRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKL 408 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Confidence 3678888877766665543 345666666666666655543 356778889999999999999999988887
Q ss_pred HHHHHHHHHHHHH
Q 014471 396 AILIVHLFVFLTL 408 (424)
Q Consensus 396 aqLrd~L~ealta 408 (424)
..+++.+....-+
T Consensus 409 ~~~~~~i~~lkhe 421 (591)
T COG5293 409 HALDQYIGTLKHE 421 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666544333
No 184
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=75.32 E-value=12 Score=34.41 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.+|..+...|+++.+.|..||.+++.++.+++..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666677777777777777777777665543
No 185
>PRK09039 hypothetical protein; Validated
Probab=75.20 E-value=1.1e+02 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+.-.+|..|+.+...|++|+..|+.....++.+..+.+.+|+.++
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777777777776664
No 186
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.19 E-value=22 Score=28.54 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVH 401 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~ 401 (424)
.+++.++..++.....+...+..|++....+..+...+..+|..++....|--.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666677777777777777777777788888777766554433
No 187
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.12 E-value=25 Score=30.25 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
.=|+.|-..-|.+|..|+.++..|..++..|+.+......|.++|
T Consensus 38 ~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 38 ALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999999999999988888777777766
No 188
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.77 E-value=71 Score=36.77 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQ-------VTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLFVFLTLFFFREIL 415 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Q-------l~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ealta~f~rEI~ 415 (424)
+|.++..++..+..||..|... |..|.+.......+...|+.||+++|. -+.|+-.|+...+++=.|-+.
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E 170 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEE 170 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666676666552 233444445555555666666666664 344444444444444444333
No 189
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.73 E-value=1e+02 Score=34.02 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+.+|+.++..++.+...+..++..++++...+..+..+++.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.70 E-value=82 Score=30.16 Aligned_cols=30 Identities=10% Similarity=0.006 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 365 SAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 365 s~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.++..++.+...|.-|+..|.+|+..+++
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554
No 191
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.59 E-value=12 Score=29.84 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTE 360 (424)
Q Consensus 347 ieELE~KVq~Lq~E 360 (424)
+.+||.++..+...
T Consensus 2 i~elEn~~~~~~~~ 15 (55)
T PF05377_consen 2 IDELENELPRIESS 15 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566655555444
No 192
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=74.57 E-value=44 Score=31.40 Aligned_cols=78 Identities=17% Similarity=-0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL-IRAILIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~ealta~f~rEI~~~lq 419 (424)
.-+.|...|+.++..++.++..|...+.....+..........+..+|+... ...+|+.++..+.....+.|+..++.
T Consensus 76 ~~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~DEEaeE~~l 154 (158)
T PF09486_consen 76 ALRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQDEEAEEAAL 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhcchHHHHHHH
Confidence 3467888999999999999888888888777777777777766666666544 34566666666666666777776554
No 193
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.26 E-value=67 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+|..|+.+...+..++..+..+...+ +..++..+..+++
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~ 184 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHE 184 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34444444444444444433333322 2334445555443
No 194
>PF15058 Speriolin_N: Speriolin N terminus
Probab=74.13 E-value=7.5 Score=37.83 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
+.|-+++..|..||.+|++++.++ .||.+||.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksa 40 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLI--------RENHELKSA 40 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHH
Confidence 456666777777777777766543 355556533
No 195
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=74.12 E-value=65 Score=34.51 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=50.4
Q ss_pred hHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 313 EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 313 ~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
..+..+| .-+||.|.+++.-+. -|+++.+|..+-..-+..|+.|..+|..||..-..+....+.+...|..+|+
T Consensus 104 ~~~s~La-AaE~khrKli~dLE~---dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 104 NAASLLA-AAEKKHRKLIKDLEA---DREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH---HHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 345666666665544 5677888888888888899999999999988776666666666555554443
No 196
>PRK02119 hypothetical protein; Provisional
Probab=74.11 E-value=26 Score=28.73 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..||.++..|+....-+...|..|.........+...|+.+|..|
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888887777666666666655555555555555555444
No 197
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.00 E-value=33 Score=36.13 Aligned_cols=36 Identities=33% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
+|-.=.+.|+.+.++|..|+..|+..++-|.....|
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444445555555555555555555555555544444
No 198
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.92 E-value=23 Score=32.21 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSI--AELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren--~~L~~EN~ELK~RLqaLEQ 394 (424)
+.+|..++..|+.++..|..++..|...- ..|..+..+|+.++..|+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555555432 4455555555555554443
No 199
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=73.83 E-value=40 Score=30.48 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
|+..+...+.....-...+..|+..+..+..++.+.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444333333
No 200
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.80 E-value=49 Score=30.57 Aligned_cols=39 Identities=15% Similarity=-0.141 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFL 406 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~eal 406 (424)
+..|+.+...|..+|...+...++--.+.++..+|..++
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al 91 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSAL 91 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555533333333223333333443333
No 201
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=73.77 E-value=41 Score=35.00 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
|..+...|+.+...|.+|+..+-.....+
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444444333
No 202
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.76 E-value=86 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
.|.+||..+..++.+.......+..+.+++..+..
T Consensus 67 ~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 67 QLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 33344444444444433333333333333333333
No 203
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=73.76 E-value=14 Score=32.31 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
..||.++++..+.|..-|++.++.|..+|..|+.|.+.+|.....+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 36899999999999999999999999999999999999988765443
No 204
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=73.61 E-value=26 Score=40.25 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
+|.++++.|+.+..+|..-+.+||...-.|.+..++.++..
T Consensus 96 dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~ 136 (829)
T KOG2189|consen 96 DLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTD 136 (829)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555555555555555555544444443333
No 205
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=73.59 E-value=49 Score=27.15 Aligned_cols=47 Identities=30% Similarity=0.379 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQT--EATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 346 YieELE~KVq~Lq~--EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+..|+..+..|-+ .+.+|+.+|..++..+..|..+..++-.+|..+
T Consensus 11 ~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 11 NVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666654 556677777777777777777766665566555
No 206
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=73.17 E-value=31 Score=33.18 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 327 KRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 327 RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
+=|++-|.++..-|.+=+.|..+||.+=..|.....-.+.||..|++.+..+.
T Consensus 116 ~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 116 RAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788889999999999999999999999999888888888888887775543
No 207
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.14 E-value=71 Score=28.77 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 335 SAARSKERKMRYISELEQKVQTLQTEATTLS-------AQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 335 SAqRSReRKK~YieELE~KVq~Lq~EN~~Ls-------~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+-.-|.++..+++.++..+.....+...|. .++..++.+...++.+...++.++..+
T Consensus 107 ~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i 171 (218)
T cd07596 107 ETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI 171 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555544443 345555555555555555555555443
No 208
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.09 E-value=24 Score=28.09 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+..|+.+...|...+. ++..||.+|+..++.+++-
T Consensus 2 i~elEn~~~~~~~~i~-------tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSIN-------TVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444 4455555555555555544
No 209
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.08 E-value=14 Score=28.74 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTIL 371 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~L 371 (424)
.++.+.+|+.+++.|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666666666666666666555
No 210
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=73.02 E-value=33 Score=34.85 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLq 390 (424)
|..|+++...++.|+.....+|.
T Consensus 167 l~~LeqELvraEae~lvaEAqL~ 189 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLS 189 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444433333333
No 211
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=72.82 E-value=94 Score=35.87 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAAR-----------SKERKMRYISELEQKVQTLQTEATTL 364 (424)
Q Consensus 322 DpKR~RRiLkNRESAqR-----------SReRKK~YieELE~KVq~Lq~EN~~L 364 (424)
+..++|++|+-.+.--+ -..|.+.|..++...+..|+..+..+
T Consensus 503 E~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 503 EENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 35567777665443322 23444555555444444444444333
No 212
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.79 E-value=39 Score=32.97 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
+.+...|+...+..++|+.+...|+.+...|+.++..++...-..
T Consensus 105 en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 105 ENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 444445555555555666666666655555555555555444333
No 213
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=72.70 E-value=56 Score=29.97 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKV-QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 341 eRKK~YieELE~KV-q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..--+|-++||.++ -.++.-+..--.+|..||.-...+..+...|+..+..+++
T Consensus 78 ~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 78 NIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777776 6666666666777777777777777777777766655544
No 214
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.54 E-value=1e+02 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.232 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 014471 405 FLTLFFFREIL 415 (424)
Q Consensus 405 alta~f~rEI~ 415 (424)
+++...+.||-
T Consensus 135 fl~~~heeEi~ 145 (312)
T PF00038_consen 135 FLKQNHEEEIE 145 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhhhhhhh
Confidence 33344444443
No 215
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.43 E-value=34 Score=31.71 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 365 SAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 365 s~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
..+++.|+++......+...||.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444443
No 216
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.36 E-value=53 Score=26.92 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+=..+|+.|+.|-..|+.+...+...+..|..++.++.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33445555555555555544444443444443333333
No 217
>PRK04406 hypothetical protein; Provisional
Probab=72.31 E-value=32 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
++.||.++..|+....-+..-|..|.........+...|+.+|..|
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888888877776666666666655555555555555555444
No 218
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=72.29 E-value=93 Score=31.70 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV-FLTLFFFREI 414 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e-alta~f~rEI 414 (424)
|..++..|+++.+...--..=||.++..+-|.++=|..|+. .++++.-.++
T Consensus 56 L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~RHg~ 107 (277)
T PF15030_consen 56 LQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHRHGP 107 (277)
T ss_pred HHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555555555544555566667667776666666664 4455443333
No 219
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.25 E-value=1.3e+02 Score=32.99 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
-++.-+..+..||..+..|......|+.....|..+.+.+..+...|+.||
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 345555556666666666666666666666666555555555555555444
No 220
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.12 E-value=95 Score=38.24 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+++|+.++...+.+...+..++..++.+...+..+..+|+.++.
T Consensus 357 LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444433
No 221
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=71.99 E-value=55 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+.+-.+...|..|...+.+.++..+.+...|..||..|..+.-.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666777777777777777777766655443
No 222
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.92 E-value=66 Score=32.76 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
++...+.|...+..++...+.+...+.....+.+.||..++
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444445555554444
No 223
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=71.89 E-value=4.4 Score=30.57 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 356 TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 356 ~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.|-..|..|..++..|+.+...|..||..|+.++.
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 44455666777777777777777777777776653
No 224
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=71.84 E-value=96 Score=29.74 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+.-..+++.++.....+...+..++..|+
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444433
No 225
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=71.78 E-value=56 Score=36.13 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e 404 (424)
=.+.++.++..|+.|..-+.++..++..-..+...|..+-..|+.+.+.++.+.++-....+
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~ 104 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLE 104 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999888877766555544
No 226
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.73 E-value=66 Score=33.02 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.7
Q ss_pred HhhhcChHHHHHHHHHH
Q 014471 317 EIALSDPKRAKRILANR 333 (424)
Q Consensus 317 ElAl~DpKR~RRiLkNR 333 (424)
+++.+++|-.|=|+.|-
T Consensus 85 ~l~evEekyrkAMv~na 101 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNA 101 (302)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44556788888898883
No 227
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.70 E-value=38 Score=35.72 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=3.7
Q ss_pred hhhhhhhh
Q 014471 140 IQLVKQES 147 (424)
Q Consensus 140 ~~~v~~e~ 147 (424)
+-.||.++
T Consensus 86 ~c~VnPT~ 93 (365)
T KOG2391|consen 86 ICYVNPTS 93 (365)
T ss_pred eEEecCCc
Confidence 44455533
No 228
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.68 E-value=51 Score=26.53 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 356 TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 356 ~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
..+..|-.+..++.....++..|..+...|+.++.
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555553
No 229
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.65 E-value=67 Score=37.65 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.3
Q ss_pred HHHHhh
Q 014471 303 DAELKK 308 (424)
Q Consensus 303 ~~e~KK 308 (424)
+++++.
T Consensus 37 edlk~r 42 (1265)
T KOG0976|consen 37 EDLKKR 42 (1265)
T ss_pred HHHHHH
Confidence 333333
No 230
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.63 E-value=62 Score=36.94 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.2
Q ss_pred CCCccCCCC
Q 014471 198 DMDSRASGS 206 (424)
Q Consensus 198 ~~ds~~s~~ 206 (424)
-+|..++||
T Consensus 412 LlDE~~~Gt 420 (782)
T PRK00409 412 LFDELGAGT 420 (782)
T ss_pred EecCCCCCC
Confidence 445544443
No 231
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.62 E-value=6.4 Score=33.46 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
-|+.+++.|+.+++.++.+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888888888888888888776654
No 232
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=71.54 E-value=42 Score=34.08 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
-|..|+.|.+....-+.++-.-..|..||.++..++.++....+||..+.++
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3344444444443333222222344555555555555555555555555444
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.53 E-value=1.2e+02 Score=31.59 Aligned_cols=33 Identities=15% Similarity=0.017 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVLLPFLIRAI-LIVHLFVFL 406 (424)
Q Consensus 374 en~~L~~EN~ELK~RLqaLEQqaq-Lrd~L~eal 406 (424)
+.+.|-.||+.|++||..++.+.- ++..|.++.
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999988765443 344444433
No 234
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.30 E-value=73 Score=31.35 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV 400 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd 400 (424)
.||.+...++.++..|..+....+.+...|..+..++...+..|++...-++
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke 102 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKE 102 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666665555556666666666666666666665544443
No 235
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.24 E-value=97 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
..+++..+..|+.+++.++.++..+++++..++..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444444444444444333
No 236
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.04 E-value=69 Score=36.54 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.6
Q ss_pred CCCccCCCC
Q 014471 198 DMDSRASGS 206 (424)
Q Consensus 198 ~~ds~~s~~ 206 (424)
-+|..++||
T Consensus 407 LlDE~g~Gt 415 (771)
T TIGR01069 407 LFDELGAGT 415 (771)
T ss_pred EecCCCCCC
Confidence 455555553
No 237
>PRK14127 cell division protein GpsB; Provisional
Probab=71.03 E-value=28 Score=30.84 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
.|..++..|+.+|..|..++..++.+.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444433
No 238
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=70.96 E-value=76 Score=30.31 Aligned_cols=31 Identities=23% Similarity=-0.010 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
|..++..|+.++..|..++..|+.++..++.
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~e 139 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEE 139 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666655543
No 239
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.86 E-value=42 Score=35.39 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
+-.|..+-.+|..++..|+.+...+..+..
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 240
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=70.77 E-value=21 Score=29.53 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
...+...+..++..++++...|..||..|+.++..+....
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~ 72 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPS 72 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 3445666777788888888888888888887777766554
No 241
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=48 Score=38.58 Aligned_cols=59 Identities=22% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF-LIRAILIVHLF 403 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL-EQqaqLrd~L~ 403 (424)
+|+++|...++.+......|-.+++.+++....|..||.+|+.+++.+ ++.+||++.+.
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~ 709 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD 709 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555543 34444444443
No 242
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=70.62 E-value=64 Score=28.31 Aligned_cols=67 Identities=15% Similarity=0.020 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
..+.+|+|-.+..+-..- +.-+-.--..+-.....+..+++.++.++..|..+|..|+.++..|+..
T Consensus 20 ~~~~~~~l~~~l~~~l~~------f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 20 RVRRRRILTLVLLALLAL------FQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556666666655443 2222222333333444556666666777777777777777777666655
No 243
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.59 E-value=31 Score=39.61 Aligned_cols=61 Identities=16% Similarity=0.055 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL-----LPFLIRAILIVHLFVFLTLFFFREIL 415 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL-----qaLEQqaqLrd~L~ealta~f~rEI~ 415 (424)
+.|..|...++.++..++.+...|...+..|+..+ +.++++..+++++.......++.+..
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~~~~~~ 284 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRRETETT 284 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHhhcch
Confidence 44555556666666666655555555555555444 44556667777777766666655544
No 244
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.55 E-value=31 Score=38.88 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
..+.|||.|-|.|+.|..++..+++.|++....-..|...||..+++
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 45779999999999999999999999998888777777777766644
No 245
>PF15058 Speriolin_N: Speriolin N terminus
Probab=70.29 E-value=9.5 Score=37.12 Aligned_cols=41 Identities=15% Similarity=-0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 369 TILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 369 ~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
+-|..++..|+.||.|||+++.-+.+...||-+|-++.+.-
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~ 48 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEP 48 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44566778899999999999999998888888887766543
No 246
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.29 E-value=19 Score=39.18 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+-+.++.+|+.+...|+.++.++.++...+..+.++|..+++.|
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 247
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=70.18 E-value=59 Score=26.62 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
|-+.|..|-..-+.|....-.+...|..|...+..+..+..+|+.++...+..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777665543
No 248
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.15 E-value=84 Score=30.58 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+|++...|..|......||..+.
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665543
No 249
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=70.07 E-value=28 Score=36.19 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.+|++.|+.++..|+.+..+|.+++.... ....+.++|+.++++++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k 287 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEK 287 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHH
Confidence 45666666666666666666666554433 333344445555544443
No 250
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.02 E-value=31 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
||.++..|+....-+...|..|.........+...|+.+|+.|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766666666666666555555555555555554443
No 251
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=69.47 E-value=21 Score=34.78 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
.||..|..+|..++.++..|..||.+|+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999998875
No 252
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=69.22 E-value=13 Score=29.08 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
|++..|.|||.+++.-+ |...+- -.....+...|..||..|+.+|.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~d--~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSLD--RSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777766543 211111 12234455556666666666553
No 253
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=68.99 E-value=40 Score=30.42 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+|+.-..=+.|-++|+++|+.|+-+..++..-|+.|..||.-||
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555655555554
No 254
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=68.94 E-value=21 Score=39.57 Aligned_cols=63 Identities=22% Similarity=0.053 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.|+|-.||-. |+=|-+.-..+-++.+. .-...|.++|+.|..+|+.|..||..||.||..++-
T Consensus 275 ~d~kv~krqQ---------RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 275 SDIKVLKRQQ---------RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred cCHHHHHHHH---------HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5788777731 44343333444443321 122458889999999999999999999999988875
No 255
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=68.82 E-value=0.37 Score=41.91 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
.+.-.|.+++..|+.+...|..|..+|+.+++.++++.
T Consensus 6 ~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 6 NEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -------------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444445555555555556666666666665543
No 256
>PTZ00464 SNF-7-like protein; Provisional
Probab=68.78 E-value=1.2e+02 Score=29.57 Aligned_cols=30 Identities=10% Similarity=-0.077 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
++-+.++.+...|..++..|+.....+..-
T Consensus 68 K~KK~~E~ql~~l~~q~~nleq~~~~ie~a 97 (211)
T PTZ00464 68 QQKRMYQNQQDMMMQQQFNMDQLQFTTESV 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444545555555555555554444433
No 257
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.72 E-value=44 Score=33.87 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIA 376 (424)
Q Consensus 326 ~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~ 376 (424)
+.-+.++-.-++.--+.....++++-.+++.++.++.++..++..|+.+..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444433
No 258
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.69 E-value=30 Score=35.24 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
++.+.+.+.+++.++.+...|..++.....+...|..+......+
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444333333333333333333333333333333
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.34 E-value=1.2e+02 Score=34.51 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL-IRAILIVHLFV 404 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~e 404 (424)
.+++++|+.|+.+......++..++++...|......|..|++... .|+.|...+..
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444555555555555444444544444322 34444443333
No 260
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.29 E-value=75 Score=35.49 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 373 VSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 373 ren~~L~~EN~ELK~RLqaLE 393 (424)
.....|..||..|+.+|..++
T Consensus 566 ~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 456688889999998885554
No 261
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.24 E-value=1.6e+02 Score=32.32 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=4.7
Q ss_pred CCCCCcccc
Q 014471 247 APTVRHCRS 255 (424)
Q Consensus 247 ~p~~rH~rS 255 (424)
-|.+||+-+
T Consensus 214 cpvcR~~q~ 222 (493)
T KOG0804|consen 214 CPVCRYCQS 222 (493)
T ss_pred ChhhhhhcC
Confidence 345555555
No 262
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.03 E-value=1.3e+02 Score=30.79 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=4.6
Q ss_pred HHHHhhcc
Q 014471 176 LFNEYMNL 183 (424)
Q Consensus 176 l~~~ym~l 183 (424)
||..||..
T Consensus 100 LF~EY~~a 107 (312)
T smart00787 100 LFKEYFSA 107 (312)
T ss_pred HHHHHHcC
Confidence 66666643
No 263
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=67.92 E-value=83 Score=29.06 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQT---EATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~---EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
.+.-.+..|.+...++..|+. .|..|..++..|+..+... ..++..+|..+.-...|..+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~---~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTA---KEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666665 5666777777777666532 2223344444444444444443
No 264
>PRK14143 heat shock protein GrpE; Provisional
Probab=67.88 E-value=44 Score=33.19 Aligned_cols=6 Identities=0% Similarity=0.766 Sum_probs=2.3
Q ss_pred HHHHHh
Q 014471 411 FREILR 416 (424)
Q Consensus 411 ~rEI~~ 416 (424)
.+++.+
T Consensus 155 ~k~l~~ 160 (238)
T PRK14143 155 YKQLVD 160 (238)
T ss_pred HHHHHH
Confidence 333333
No 265
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=67.82 E-value=69 Score=36.87 Aligned_cols=24 Identities=13% Similarity=-0.128 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 373 VSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 373 ren~~L~~EN~ELK~RLqaLEQqa 396 (424)
++-+.|..||.+|..|||+-|..+
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~ 628 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRC 628 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655443
No 266
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.64 E-value=86 Score=39.63 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 329 iLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..-.+.++++++-=++.+...|++++.|+.|+.+|+..+..+.+....+..|..|+..++..+.
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44477899999999999999999999999999999999999999988888888888888776643
No 267
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=67.63 E-value=37 Score=27.98 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 372 QVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 372 qren~~L~~EN~ELK~RLq 390 (424)
++++..|...+..|-.++.
T Consensus 41 ~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 41 SQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 268
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=67.63 E-value=46 Score=36.53 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTIL---Q----VSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~L---q----ren~~L~~EN~ELK~RLqaLEQ 394 (424)
-++.||.++..|+.+..+|.+++..- + .....|..|..+++.+|+.++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888877532 1 1355666666677766665543
No 269
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.61 E-value=72 Score=30.82 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
-...+..||..|+.++..|.+++..|...+..|..+-+.|.++
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666665555555444
No 270
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=67.61 E-value=80 Score=27.13 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTILQV------SIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~Lqr------en~~L~~EN~ELK~RLqaL 392 (424)
+..+|..|..+|..|+. +.+....||..|+.++..+
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRL 63 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 3445666777776665444
No 271
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=67.56 E-value=17 Score=27.58 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.+..|+.....|..+|..|+.++..|++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666677777666666554
No 272
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=67.48 E-value=25 Score=37.04 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
+...|+.||..|++++..|..+.+.|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777
No 273
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.28 E-value=83 Score=36.76 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=6.6
Q ss_pred ccccCCCCCCCCCCC
Q 014471 39 RPLLDSLPPLSPSMS 53 (424)
Q Consensus 39 Rsl~dslpplsp~~~ 53 (424)
=|.++-|||.-|-+.
T Consensus 115 ls~~qpL~~a~p~~m 129 (1118)
T KOG1029|consen 115 LSYSQPLPPAAPRRM 129 (1118)
T ss_pred cCcCCCCCccccccc
Confidence 344444544444443
No 274
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.25 E-value=21 Score=35.37 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
+-+..|..+|+.|+..|.+|.+++..||.-.
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3456777777777777777777777766433
No 275
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=67.16 E-value=63 Score=34.97 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPI------AEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN------~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
.+++++++.++.+...+..++..++.+...|..-| .+|..++..|.....|.+.+..++..+
T Consensus 171 ~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 171 LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555554433 446666666666667777776666555
No 276
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=67.04 E-value=57 Score=33.24 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 366 AQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 366 ~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.++..+-..+..|..||..++.+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k 266 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSK 266 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 277
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.96 E-value=58 Score=30.16 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQ-VSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lq-ren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
.+||.....+.....+|+.++..++ .+...|..++..|+..+..|+++ |++.+......+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~--L~~ei~~l~a~~ 107 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQE--LREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
No 278
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.47 E-value=62 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
.+|.+++..+..|..|..+|..|+.+.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 279
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=66.46 E-value=54 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 014471 401 HLFVFLTLFFFREILRGLQVR 421 (424)
Q Consensus 401 ~L~ealta~f~rEI~~~lq~R 421 (424)
.+.+-|+.+.|.|+.+.+++|
T Consensus 464 ~~~~rLs~LWE~El~RtFKL~ 484 (557)
T PF01763_consen 464 EDEKRLSRLWEQELFRTFKLR 484 (557)
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 455677788888888888776
No 280
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.34 E-value=98 Score=27.71 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 330 LkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
-.-.+...-|+..=...-++|+..++.|+.++..+..++..|+.++..+......
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445444444445677777777777777777777777666666555444
No 281
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.34 E-value=1.7e+02 Score=30.33 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+|=.+|..+......|..+-..+..+...|..+-.++..+++.
T Consensus 45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555544
No 282
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.24 E-value=1.4e+02 Score=35.90 Aligned_cols=70 Identities=4% Similarity=0.012 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQ-----TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA---ILIVHLFVFLTLFF 410 (424)
Q Consensus 341 eRKK~YieELE~KVq-----~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa---qLrd~L~ealta~f 410 (424)
...+..|.+|+.+.. .++.|...|..++..|..+...+..+.+.|..+|..++.+- ..+++-..+..+++
T Consensus 1031 ~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i 1108 (1311)
T TIGR00606 1031 KEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMI 1108 (1311)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 344444444444432 34445555666666666666677777777777776665433 33333333444444
No 283
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.22 E-value=1.2e+02 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+=+..-.+|.|++.....|..|-..+.++|.....+...|....++++....
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557888888888888888888888888888777777777766654443
No 284
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.18 E-value=33 Score=38.46 Aligned_cols=53 Identities=21% Similarity=0.045 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLF 403 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ 403 (424)
=.+|-.|++|..+|+..++..+.++..|...+..++.--+.+|. .-.||+.|.
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK 159 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELK 159 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence 35777888888888888999999999999999999877777774 344554444
No 285
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.92 E-value=1.4e+02 Score=29.38 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 336 AqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
|+..=.+...-+..|+.+.+.++.+...|..+...++..+..|..
T Consensus 24 a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 24 AQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455556666666555555555554444444444443
No 286
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=65.70 E-value=10 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~ 366 (424)
..|.+|+.++..|+.||+-|+.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777766654
No 287
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=65.29 E-value=76 Score=26.04 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
.|-.+++.|...|..|...+.....+...|..........+-++.-.-+-.+.+.++.+.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~ 61 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEV 61 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777777776666555555553333444455555444
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.27 E-value=1.1e+02 Score=30.41 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
||.+...+..+...|..++...+.+...+..++.+|+.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~ 188 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS 188 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444433333333444444443333
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.17 E-value=79 Score=31.04 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.||..+..++.+...+..++..|+.....|.....+++.+.+.+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555554444433
No 290
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.14 E-value=59 Score=33.56 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
+.|-|.+++.=++|..+|+.||.-+++
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665543
No 291
>PRK02224 chromosome segregation protein; Provisional
Probab=65.07 E-value=2.3e+02 Score=31.92 Aligned_cols=7 Identities=0% Similarity=-0.254 Sum_probs=3.3
Q ss_pred Ccceeec
Q 014471 65 TSVCIDE 71 (424)
Q Consensus 65 ~~v~~e~ 71 (424)
+.|.+++
T Consensus 68 ~~v~~~f 74 (880)
T PRK02224 68 AEIELWF 74 (880)
T ss_pred EEEEEEE
Confidence 4444544
No 292
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=65.04 E-value=30 Score=32.88 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e 404 (424)
-+.+.+++...|..+|++|+.+|+.|-+.+.-.+.+..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~ 78 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQ 78 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777666555554444
No 293
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=65.03 E-value=72 Score=31.10 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..++++|..|+.||.+|+.++..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 294
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=65.01 E-value=57 Score=35.68 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=6.7
Q ss_pred hhHHHHHhhccc
Q 014471 173 ADDLFNEYMNLE 184 (424)
Q Consensus 173 ~ddl~~~ym~l~ 184 (424)
-|||+.+-|.++
T Consensus 90 SdeFlrEdmky~ 101 (575)
T KOG4403|consen 90 SDEFLREDMKYR 101 (575)
T ss_pred chHHHHHHhhcc
Confidence 355666655554
No 295
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.88 E-value=54 Score=26.23 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
.||..|..+..+|..++..|+.+...|..+....|.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777666666666665554444
No 296
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.84 E-value=95 Score=34.98 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
-.+|+.+|..|+.++..|..+|..+++++..-+.+..
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~ 117 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASRE 117 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777766654444433
No 297
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.56 E-value=1.6e+02 Score=32.86 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 376 AELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 376 ~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
..+..+.++|+.+++.++...+.++.++..|.+
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~ 475 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVK 475 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777766655444
No 298
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.50 E-value=1.3e+02 Score=28.50 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE-LILPIAEFLIVLLPFL 393 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~-L~~EN~ELK~RLqaLE 393 (424)
..-...+.+|+.++..|+.+...|..++..+++.... +..+++..+.+++.+.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk 176 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLK 176 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666655543 3344444445554443
No 299
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=64.43 E-value=18 Score=41.78 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhh
Q 014471 408 LFFFREILRGLQ 419 (424)
Q Consensus 408 a~f~rEI~~~lq 419 (424)
+.++++++.+||
T Consensus 1040 ~GVmDslLeaLq 1051 (1102)
T KOG1924|consen 1040 TGVMDSLLEALQ 1051 (1102)
T ss_pred hhhHHHHHHHHH
Confidence 345677777766
No 300
>PRK02224 chromosome segregation protein; Provisional
Probab=64.41 E-value=1.7e+02 Score=32.89 Aligned_cols=7 Identities=0% Similarity=0.259 Sum_probs=3.0
Q ss_pred HHHHhhh
Q 014471 303 DAELKKI 309 (424)
Q Consensus 303 ~~e~KKi 309 (424)
+.+++++
T Consensus 148 p~~R~~i 154 (880)
T PRK02224 148 PSDRQDM 154 (880)
T ss_pred HHHHHHH
Confidence 3444443
No 301
>PRK00846 hypothetical protein; Provisional
Probab=64.22 E-value=62 Score=27.20 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+||.++..|+....-...-|..|.........+...|+.+|
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555555555444444444444444444444
No 302
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=32 Score=31.11 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~ 377 (424)
-+..|..-+++|+.++..|+.+..+|..|...++.+...
T Consensus 64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 64 VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667778877777776666666555554444433
No 303
>PRK10698 phage shock protein PspA; Provisional
Probab=64.18 E-value=1.2e+02 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.++..|+.+.......+..|+.+...|.....++|.+...|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444333
No 304
>PRK14161 heat shock protein GrpE; Provisional
Probab=64.10 E-value=90 Score=29.67 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
||.-|..++.+...|.+++..++.++..+.+|...+|.|.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~ 56 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRL 56 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444
No 305
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.49 E-value=64 Score=38.17 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+.+|..++.|+..-.++.+-+..||.+.+.|+.+|.+||+|+
T Consensus 1008 ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1008 EKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 456666667777777788889999999999999999999997
No 306
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=63.31 E-value=40 Score=33.34 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=6.8
Q ss_pred HHHHHhhhhccc
Q 014471 411 FREILRGLQVRT 422 (424)
Q Consensus 411 ~rEI~~~lq~Rt 422 (424)
.+++..++.+|+
T Consensus 74 ~e~~~~Al~L~~ 85 (236)
T PF12017_consen 74 KEDKSFALSLYK 85 (236)
T ss_pred HHHHHhhheeee
Confidence 555556665554
No 307
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=63.29 E-value=2.2e+02 Score=30.69 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSA------------QVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 329 iLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~------------Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.-.||-.--.++.+=....+.|..+|..||.-...|+. ++..+.++...+..+..+|+..+..+
T Consensus 197 ~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 197 GDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666677777777777777776655 34455555555555555555555433
No 308
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.28 E-value=1.3e+02 Score=30.09 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISE---------------------LEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieE---------------------LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
.++..+..+...++.-..+-+..+.. +....+.+..+...+..++..++.+...+..+.
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i 160 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAEL 160 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014471 383 AEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQV 420 (424)
Q Consensus 383 ~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~lq~ 420 (424)
..++.++...+++..+...-.+..+.++.+.++...++
T Consensus 161 ~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~ 198 (423)
T TIGR01843 161 AGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLEL 198 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
No 309
>PF14282 FlxA: FlxA-like protein
Probab=63.22 E-value=44 Score=28.91 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEF 385 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~EL 385 (424)
++..|+.+...|..+...|
T Consensus 52 q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 310
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.10 E-value=1.2e+02 Score=36.79 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 335 SAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 335 SAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
+...+.++++.-+.+|+..+..+..|..+....+..+..+...|....+.+++++..+.+..+-.-.=++++++
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a 605 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA 605 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34445666777777777777777777777777777777777777777777777776665533333333334444
No 311
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=63.08 E-value=8.5 Score=29.04 Aligned_cols=42 Identities=33% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 326 ~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
.+++..|++=|+..-.... .|.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 3556666666665555444 36788888888888888887765
No 312
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=63.04 E-value=52 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+.+..||.||..|+..-..+...+..-++++-.+..+...|+++|.+++
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~ 127 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLD 127 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHH
Confidence 4456667777666655555444444333344444444444444444443
No 313
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.85 E-value=2.1e+02 Score=34.00 Aligned_cols=7 Identities=43% Similarity=0.748 Sum_probs=2.6
Q ss_pred ccccccc
Q 014471 254 RSVSMDS 260 (424)
Q Consensus 254 rS~S~Ds 260 (424)
|.+++|+
T Consensus 637 riVTl~G 643 (1163)
T COG1196 637 RIVTLDG 643 (1163)
T ss_pred eEEecCC
Confidence 3333333
No 314
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.82 E-value=64 Score=33.31 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014471 347 ISELEQKVQTLQ-----TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILR 416 (424)
Q Consensus 347 ieELE~KVq~Lq-----~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~ 416 (424)
|+||..++..++ .|.....+||++- ....|.++||+-+++|..- |.|+-.-..+=++...|++
T Consensus 91 I~eLksQL~RMrEDWIEEECHRVEAQLALK-----EARkEIkQLkQvieTmrss--L~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 91 IDELKSQLARMREDWIEEECHRVEAQLALK-----EARKEIKQLKQVIETMRSS--LAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhh--hchhhhhHHHHHhhhhhhH
Confidence 555555554433 3444444554432 2345666677666666432 2333222333344556654
No 315
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.35 E-value=1.3e+02 Score=35.43 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSA-------QVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~-------Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+.+.-++|+.+...+.+-..+|..+|..++.+...+.. .+..|+++...|..|..+|+..+
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556777777777777777777777766665555322 33344444444444444444443
No 316
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=62.11 E-value=1.5e+02 Score=28.78 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+|+..--.=+.-|+.|-..|..++..-..+...+..|++.+..+|
T Consensus 126 ~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 126 AEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433344556777777777777766666666776666665544
No 317
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.07 E-value=61 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+||.++..|+....-+..-|..|.........+...|+.+|
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777776666655555555544444444444444444
No 318
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=62.06 E-value=43 Score=39.12 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..|-.|.-+++.|++|.+.|.+.++.+|.+...-+.|..++..|+..+++
T Consensus 106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555544443
No 319
>PF13166 AAA_13: AAA domain
Probab=61.81 E-value=2.1e+02 Score=31.35 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
++...+..++.+...+..++..++.....+..+...++.++..+++
T Consensus 407 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444443
No 320
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.77 E-value=2.3e+02 Score=34.10 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=4.1
Q ss_pred HHHHhhhh
Q 014471 303 DAELKKIW 310 (424)
Q Consensus 303 ~~e~KKi~ 310 (424)
+.++|+++
T Consensus 168 ~~~rk~~~ 175 (1311)
T TIGR00606 168 GKALKQKF 175 (1311)
T ss_pred hHHHHHHH
Confidence 44555544
No 321
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.72 E-value=1.7e+02 Score=37.31 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
.++++|...+.++.|...+..+
T Consensus 944 ~~~~~E~~~~k~~~Ek~~~e~~ 965 (1930)
T KOG0161|consen 944 QLEELELTLQKLELEKNAAENK 965 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433444444333333
No 322
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=61.61 E-value=1.7e+02 Score=28.75 Aligned_cols=69 Identities=25% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.+|+.|+.+.-..+. -+|+||..+.+.++-.-+-+= |.+.-++++..-.|...|+.-++.||.+|+.|.
T Consensus 7 ~~sDeell~~skeel--------~~rLR~~E~ek~~~m~~~g~l---m~evNrrlQ~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 7 KVSDEELLRWSKEEL--------VRRLRRAEAEKMSLMVEHGRL---MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred cCCHHHHHhcCHHHH--------HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554333222 257788777777766554433 335555555555555555554444444444433
No 323
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.44 E-value=68 Score=36.68 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 014471 375 IAELILPIAEFLIV 388 (424)
Q Consensus 375 n~~L~~EN~ELK~R 388 (424)
+.+|..|++.|...
T Consensus 123 fE~~Khei~rl~Ee 136 (717)
T PF09730_consen 123 FEGLKHEIKRLEEE 136 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 324
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.38 E-value=1.8e+02 Score=31.89 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
++.++..++.++..+..++..++
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~ 87 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVT 87 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333
No 325
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.33 E-value=27 Score=28.63 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 014471 349 ELEQKVQTLQT 359 (424)
Q Consensus 349 ELE~KVq~Lq~ 359 (424)
.|+.++..++.
T Consensus 66 ~L~~~~~~~~~ 76 (106)
T PF01920_consen 66 ELEERIEKLEK 76 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 326
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=61.13 E-value=59 Score=29.35 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
|..+.|-.+---|.==+..|..||..++.++.-+..|..+|.+|+.........+..
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666655566777777777777777777777777777666555555444
No 327
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.03 E-value=56 Score=31.00 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTIL-------------QVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~L-------------qren~~L~~EN~ELK~RLqa 391 (424)
-+..|..++..++.+...|..++..+ .++...|..++.+|+.+|+.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444433 23444455555555555543
No 328
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.87 E-value=36 Score=38.29 Aligned_cols=61 Identities=26% Similarity=0.231 Sum_probs=38.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 320 LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 320 l~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
+.|-|-+--|.+| +|-.||..|.-|+.-|+.++...++-...|..++++|.+.|..+.+.+
T Consensus 313 LLetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 313 LLETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677776 666777777777777777766666655566666666655555444433
No 329
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=60.85 E-value=1.2e+02 Score=29.73 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=32.8
Q ss_pred HhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 317 EIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 317 ElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+|..|-+|++ +.+-..-+.|.-..-+.....|...+..-+.+-.....+-...+.+...|..|..++..+|..+
T Consensus 99 ~LA~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 99 RLADVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544444 3443333333333334444444444444443333333333344444555555555555444444
No 330
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=60.59 E-value=1.6e+02 Score=28.83 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
+.-..+.+.|.+-..|+.++..+...|..-+.+...|..+
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaD 134 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQAD 134 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554444444444433
No 331
>PRK04325 hypothetical protein; Provisional
Probab=60.38 E-value=61 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+..+|.++..|+....-+..-|..|.........+...|+.+|
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777766655555555555444444444444444444
No 332
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.23 E-value=2.1e+02 Score=29.56 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
++.||..+.++.....+|..-|..|++.|+.|+
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 444555444444444444444444444444443
No 333
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.22 E-value=1.9e+02 Score=34.36 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 014471 105 GHRRSSSDIP 114 (424)
Q Consensus 105 ~HRRs~Sd~p 114 (424)
||+-+-+||-
T Consensus 116 g~~~~~~dI~ 125 (1163)
T COG1196 116 GEKVRLKDIQ 125 (1163)
T ss_pred CcEeeHHHHH
Confidence 4555555653
No 334
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=59.93 E-value=1.3e+02 Score=27.63 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQ 372 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lq 372 (424)
..+..+..+|..|+
T Consensus 40 ~~l~~~~~qL~~l~ 53 (135)
T TIGR03495 40 AELASKANQLIVLL 53 (135)
T ss_pred HHHHHHHhHHHHHH
Confidence 33333333443333
No 335
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.89 E-value=1.8e+02 Score=28.60 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
|+.++..|+..+..+..+...|+.+
T Consensus 118 l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 118 LKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 336
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.78 E-value=52 Score=33.52 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+.+.+.+++..+.+...|..++..|+.++.....+..+|+.+++..+..
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555566666666666666666666666666665555554443
No 337
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=59.76 E-value=1.6e+02 Score=27.82 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKERKMRYISELEQKVQT-LQT-------EATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 329 iLkNRESAqRSReRKK~YieELE~KVq~-Lq~-------EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.+..=..+-+-|.+|+--.+.+..++.. ++. +...|..--..|+........-|.+|+..|-
T Consensus 108 ~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP 177 (216)
T cd07599 108 YIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELP 177 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444455677777777777777777 543 2344544445555556666677778887773
No 338
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=59.72 E-value=88 Score=34.00 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 336 AqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
-+..|.||+.-+++||.-|..-|.|..-...+-...+++...|
T Consensus 341 ~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~L 383 (446)
T PF07227_consen 341 LQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGL 383 (446)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999888777665554444444444443
No 339
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.68 E-value=1.9e+02 Score=34.59 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEAT 362 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~ 362 (424)
...+-+..+..--+.....++.++..+..++....
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777778888888888888888887776
No 340
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=59.23 E-value=50 Score=33.85 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
|++||..+..|+.++......+..+.+.+..|..|..+|+..|
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433334444444444444444444333
No 341
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.15 E-value=1.8e+02 Score=34.84 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=7.4
Q ss_pred cccccccccc
Q 014471 252 HCRSVSMDSY 261 (424)
Q Consensus 252 H~rS~S~Ds~ 261 (424)
-+||+.+|++
T Consensus 644 ~~rsVTl~GD 653 (1174)
T KOG0933|consen 644 RTRSVTLEGD 653 (1174)
T ss_pred ccceeeecCc
Confidence 5777888776
No 342
>PRK00295 hypothetical protein; Provisional
Probab=58.98 E-value=69 Score=25.88 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
||.++..|+....-+..-|..|.........+...|+.+|..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555555555544444444444444444433
No 343
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=58.75 E-value=73 Score=30.53 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
-++|++|+.+-+.+...++.+..+|..++...+
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666655555555555555544433
No 344
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=58.67 E-value=59 Score=31.05 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
++..|+.++..|+.++..|..+...++.++..|.
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544443
No 345
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.60 E-value=29 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~R 388 (424)
++..|++....|..+|..|+.+
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444433
No 346
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=58.44 E-value=51 Score=33.43 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=47.3
Q ss_pred HHHH-hhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 303 DAEL-KKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQ-TLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 303 ~~e~-KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq-~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
..|+ |.+..-+.|-..+..-.++.-|+|..---+-|-++||++--.+|..+.+ ++-.|..+|.++++.|+.+...|.+
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555 4444555665555445667777887777777888888877777776643 3444444555544444444444444
Q ss_pred H
Q 014471 381 P 381 (424)
Q Consensus 381 E 381 (424)
|
T Consensus 243 e 243 (289)
T COG4985 243 E 243 (289)
T ss_pred h
Confidence 4
No 347
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=58.41 E-value=70 Score=25.60 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
...+..++.++..++.||..|..++..|.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555555555555555554443
No 348
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.35 E-value=1.6e+02 Score=30.55 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
++-..++..|+.||..|...+..|++....|..+.
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 34445566666666666666666665555444443
No 349
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=58.31 E-value=1.7e+02 Score=32.08 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV 400 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd 400 (424)
....+|+..++.|..+..........+...+..|..+..+.+...+.++++.+.-.
T Consensus 103 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~ 158 (779)
T PRK11091 103 ELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLR 158 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665554444444455556666666666655555555444333
No 350
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.28 E-value=24 Score=35.61 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+.+||.++..|+-+..+|+. ++.++.++.....+..+.-.|++.++..
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g 105 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESG 105 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 56888888888888888887 7788877766666666666677766654
No 351
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=58.26 E-value=70 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.|+..+..++.+...+..++...+
T Consensus 98 ~~~~~~~~~~~~i~~~~~~~~~a~ 121 (334)
T TIGR00998 98 QLEITVQQLQAKVESLKIKLEQAR 121 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 352
>PRK14011 prefoldin subunit alpha; Provisional
Probab=58.10 E-value=56 Score=30.08 Aligned_cols=13 Identities=8% Similarity=-0.187 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 014471 385 FLIVLLPFLIRAI 397 (424)
Q Consensus 385 LK~RLqaLEQqaq 397 (424)
|..+++.++++++
T Consensus 125 L~~k~~~~~~~~~ 137 (144)
T PRK14011 125 LEKRAQAIEQRQA 137 (144)
T ss_pred HHHHHHHHHHHhh
Confidence 4455555555443
No 353
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=57.71 E-value=1.3e+02 Score=31.55 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP--FLIRAILIVHLFVFLTL 408 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa--LEQqaqLrd~L~ealta 408 (424)
|=+..-+.+|.|+..|+.+|.-+..+-..|+.++. |-+||--=.|. -|||++|...|.+.-++
T Consensus 30 ~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyr----ecqell~lyq~ylseqq~kl~~s~~~l~~~ 94 (328)
T PF15369_consen 30 RLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYR----ECQELLSLYQKYLSEQQEKLTMSLSELSAA 94 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCHHHhhhh
Confidence 33444567777787777777777666666664443 23333211111 35677777666665444
No 354
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=57.66 E-value=38 Score=35.37 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
|..||+.|.+|..||..-|++|..|..-|.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQ 32 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQ 32 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999988888888877765543
No 355
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=57.52 E-value=2.7e+02 Score=31.11 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhhhchhHHHHhhhcChHHHH------HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 014471 307 KKIWANEKLAEIALSDPKRAK------RILANRQSAARSKERK--------MRYISELEQKVQTLQTEATTLSAQVTI-- 370 (424)
Q Consensus 307 KKi~~~~~LaElAl~DpKR~R------RiLkNRESAqRSReRK--------K~YieELE~KVq~Lq~EN~~Ls~Ql~~-- 370 (424)
.+|-...++.+--.+-.+|-| -++-|=++|-.+|.++ +.-|+.-|.+++.|+.....|+.|+..
T Consensus 285 e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 285 EKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHhhhh
Q 014471 371 -LQVSIAELILPIAEFLIVLLPFL-IRAILIVHLFV--FLTLFFFREILRGLQ 419 (424)
Q Consensus 371 -Lqren~~L~~EN~ELK~RLqaLE-QqaqLrd~L~e--alta~f~rEI~~~lq 419 (424)
--.+...+..|..+|...|..+. |...|+-.+.+ .+.+..++++.+.++
T Consensus 365 Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~ 417 (622)
T COG5185 365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLR 417 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 356
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.50 E-value=1.5e+02 Score=34.57 Aligned_cols=8 Identities=13% Similarity=0.235 Sum_probs=6.4
Q ss_pred HHHHhhcc
Q 014471 176 LFNEYMNL 183 (424)
Q Consensus 176 l~~~ym~l 183 (424)
-|-+||+|
T Consensus 255 CiQt~lsl 262 (861)
T PF15254_consen 255 CIQTHLSL 262 (861)
T ss_pred HHHHHHHH
Confidence 47899988
No 357
>PRK14148 heat shock protein GrpE; Provisional
Probab=57.42 E-value=1e+02 Score=29.76 Aligned_cols=36 Identities=3% Similarity=-0.034 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+..|+.+...|.+++..|..++..+.++...++.|.
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444
No 358
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=57.39 E-value=79 Score=26.10 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
.+|......-+.+|..|.+++..|.++...|..
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 359
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=57.04 E-value=21 Score=41.30 Aligned_cols=6 Identities=67% Similarity=1.182 Sum_probs=3.6
Q ss_pred hHHHHH
Q 014471 174 DDLFNE 179 (424)
Q Consensus 174 ddl~~~ 179 (424)
||||..
T Consensus 656 ~dlfak 661 (1102)
T KOG1924|consen 656 DDLFAK 661 (1102)
T ss_pred hHHHHH
Confidence 667654
No 360
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=56.84 E-value=33 Score=34.41 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
-+..+..+|..+.+.|..++.++. .++.+...|+.||+.||.-|
T Consensus 63 ~~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 63 EFLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555554443333 34455667788888887554
No 361
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.83 E-value=34 Score=31.23 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++.|+.|...=-.++..|+++...+...|..|.
T Consensus 93 E~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 93 EIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333344444444444444443
No 362
>PRK01156 chromosome segregation protein; Provisional
Probab=56.82 E-value=3.4e+02 Score=30.88 Aligned_cols=8 Identities=50% Similarity=0.455 Sum_probs=4.0
Q ss_pred HHHHhhhh
Q 014471 303 DAELKKIW 310 (424)
Q Consensus 303 ~~e~KKi~ 310 (424)
+.++++++
T Consensus 148 ~~~r~~~l 155 (895)
T PRK01156 148 PAQRKKIL 155 (895)
T ss_pred HHHHHHHH
Confidence 45555543
No 363
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.58 E-value=73 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 361 ATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 361 N~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+..|..++..++.++..|..++++++.++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 364
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.52 E-value=16 Score=35.19 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.+..+..+.||+.+|..|+.+..++..++..|-.
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888888766666666666543
No 365
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=56.48 E-value=2.7e+02 Score=29.44 Aligned_cols=39 Identities=15% Similarity=-0.117 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFLI----RAILIVHLFVFLTLF 409 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLEQ----qaqLrd~L~ealta~ 409 (424)
+-.+..-|..|.+.|+.+|..-|. ++||+|.|+.-|+.+
T Consensus 113 WLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~L 155 (351)
T PF07058_consen 113 WLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVL 155 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677888888888876664 567777766555443
No 366
>PRK10869 recombination and repair protein; Provisional
Probab=56.45 E-value=1.9e+02 Score=31.63 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELIL------PIAEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~------EN~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
..+++.|+.......+++..|+-+...|.. |-.+|..+++.|.....|.+.+..++..+
T Consensus 170 ~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L 234 (553)
T PRK10869 170 CRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLL 234 (553)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444444444444433 22445555555555555555555555544
No 367
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=56.44 E-value=1.5e+02 Score=26.95 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~ 366 (424)
...|+.....|+.++..|..
T Consensus 29 ~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 29 ESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444444
No 368
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=56.40 E-value=1.1e+02 Score=34.25 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
|+++.+|+...-.|.++|.+|...+..-+.-+..|.....+|+..|..+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~ 214 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNL 214 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778777777777776666665554444444444444444433333
No 369
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.31 E-value=1.6e+02 Score=32.71 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+.|+..+..|+..|..++...+++...+..|+++++.++..|+
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555554443
No 370
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.24 E-value=35 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
|+.+++.|+.++..|..++..++++...+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333333333
No 371
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=56.15 E-value=2.2e+02 Score=28.36 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+...+.++...+.++.+...+..++..|.
T Consensus 221 ~~l~e~~~~~~~~le~~~~~~ee~~~~L~ 249 (297)
T PF02841_consen 221 EKLEEKQKEQEQMLEQQERSYEEHIKQLK 249 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555544
No 372
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.09 E-value=1.6e+02 Score=35.13 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYIS---ELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~Yie---ELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
++++++-.+|.-..+-+..++.... .+......|+.+...+..++..++.+.
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 839 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQEL 839 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666665422 233334444444444444444444333
No 373
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.95 E-value=2.5e+02 Score=33.77 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=9.2
Q ss_pred hhhHHHHHhhcccccc
Q 014471 172 VADDLFNEYMNLENID 187 (424)
Q Consensus 172 ~~ddl~~~ym~l~~~~ 187 (424)
||.=.|...+-.|.+|
T Consensus 617 amefvFG~tlVc~~~d 632 (1174)
T KOG0933|consen 617 AMEFVFGSTLVCDSLD 632 (1174)
T ss_pred HHHHHhCceEEecCHH
Confidence 5666666665555543
No 374
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=55.93 E-value=37 Score=36.89 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREIL 415 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~ 415 (424)
.|...+..||+++.+|+..+++|++|+. -.+..+++..+.+-..+|.
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~------eer~~v~~lkql~~~~q~e 456 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIA------EERERVIELKQLVNLLQEE 456 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhc
Confidence 4566678899999999999999999984 4455666655554444443
No 375
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=55.80 E-value=1.6e+02 Score=27.09 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVF 405 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ea 405 (424)
+.+....+..|...-.....+-..|...+..|..|...|..-.+++...-+-.+.|..+
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~i 81 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPI 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHH
Confidence 34444444455555555555555555556666666665555555555444444444433
No 376
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.73 E-value=45 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
.+..|..|+..|+.+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544
No 377
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=55.64 E-value=45 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.|+.++..++.++.+|..++..|..+...+..+..+|+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 378
>PRK14154 heat shock protein GrpE; Provisional
Probab=55.50 E-value=90 Score=30.58 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTE 360 (424)
Q Consensus 348 eELE~KVq~Lq~E 360 (424)
.+|+.++..|+..
T Consensus 62 ~~le~e~~elkd~ 74 (208)
T PRK14154 62 TRMERKVDEYKTQ 74 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 379
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=55.33 E-value=1.3e+02 Score=25.52 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.|..+++.|..+...|..+......|...+|
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555555555555554444
No 380
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=55.03 E-value=1.6e+02 Score=31.81 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
..++.+|..+...+.+...++.++..||.+...|..
T Consensus 28 ~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~ 63 (508)
T PF04129_consen 28 SILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNV 63 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444433
No 381
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.97 E-value=87 Score=31.57 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 330 LkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+.+-..|+.--.+|..+...=+. ..|..|+..+.+++..|+.+...+.+..+..+
T Consensus 30 l~~~~~a~~~q~~k~~~~~~~r~--~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 30 LAGVMLAAVFQTSKGESVRRARD--LDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHhhccCcchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554332222 24555555555555555555555544444444
No 382
>PRK05255 hypothetical protein; Provisional
Probab=54.95 E-value=1.3e+02 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKV 354 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KV 354 (424)
..|......|.|-.+||..|=+.+
T Consensus 60 a~ri~~~eA~RRqlqyIGKLmR~~ 83 (171)
T PRK05255 60 AQRITSHEARRRQLQYIGKLMRNE 83 (171)
T ss_pred HhhhccchHHHHHHHHHHHHHhhC
Confidence 334444668899999999888764
No 383
>PHA03162 hypothetical protein; Provisional
Probab=54.92 E-value=43 Score=31.00 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RL 389 (424)
++.|..+...|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777888999999888
No 384
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.84 E-value=21 Score=33.72 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RL 389 (424)
-..|+.+++.|+.|..+||++|
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555565555
No 385
>PRK00736 hypothetical protein; Provisional
Probab=54.78 E-value=89 Score=25.26 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+|.++..|+....-+..-|..|......-..+...|+.+|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555555544444444444344444444444
No 386
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.78 E-value=2.8e+02 Score=29.13 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEAT--------TLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~--------~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+.+++.|.++..++.+|. .+..++..++.+...+..+..+++.++..++
T Consensus 175 ~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 175 KKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444332 1334455555555555555555555554444
No 387
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.56 E-value=93 Score=32.73 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
..+++..+++....|..+.++|+.++.
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544
No 388
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=91 Score=34.34 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
||..++.+|..|+.+-..-..+|..+++++..|.
T Consensus 356 ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls 389 (508)
T KOG3091|consen 356 RINAIGERVTELQKHHADAVAKIEEAKNRHVELS 389 (508)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4455555555555443333444444444444333
No 389
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.19 E-value=3.9e+02 Score=30.71 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014471 325 RAKRILAN 332 (424)
Q Consensus 325 R~RRiLkN 332 (424)
++-++|..
T Consensus 517 ~~~~li~~ 524 (782)
T PRK00409 517 KLNELIAS 524 (782)
T ss_pred HHHHHHHH
Confidence 33333333
No 390
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.19 E-value=1e+02 Score=34.57 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
++..|+.|...-..++..|+.+++.|...
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 391
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=54.08 E-value=1.8e+02 Score=26.79 Aligned_cols=17 Identities=24% Similarity=0.051 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014471 394 IRAILIVHLFVFLTLFF 410 (424)
Q Consensus 394 QqaqLrd~L~ealta~f 410 (424)
+|++|++.+..+.+.+.
T Consensus 62 ~Q~~Lr~~~~~~~~~l~ 78 (135)
T TIGR03495 62 AQAQLRQQLAQARALLA 78 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666665555544
No 392
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=54.00 E-value=1.9e+02 Score=26.92 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQK-------VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~K-------Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.|...-.+|+..++.|+.. +..++.+...+..++..++.+...+. ..++..+..+++
T Consensus 138 ~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~ 202 (236)
T PF09325_consen 138 QNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEK 202 (236)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444455555555444433 44445555555555555444444432 335555555543
No 393
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.86 E-value=1.4e+02 Score=27.10 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.=.+.|+.|..++.....-......++..++.+...+..+...+...++.||..
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888888888777777788888888888888888888887777766643
No 394
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=53.54 E-value=31 Score=30.74 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
|-++.+.|+.||.-|+-++..|-
T Consensus 77 lkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666655543
No 395
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.40 E-value=2.5e+02 Score=28.15 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 014471 338 RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI--RAILIVHLFV 404 (424)
Q Consensus 338 RSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ--qaqLrd~L~e 404 (424)
+.|+.||.-+++|+..+..-..+...|..++..++... ..=|++++..+..+++ +.-+++.|..
T Consensus 153 K~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~~K~~e~k~~l~~ 218 (240)
T cd07667 153 KKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQNNKRQDFRQLLMG 218 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556665555555554333444555666666666555 5667778888887775 3445555554
No 396
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.22 E-value=1.3e+02 Score=32.50 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQV----SIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqr----en~~L~~EN~ELK~RLqaLEQq 395 (424)
-.+++.|+.+-..|+++|..... ....|..+-+.|+.+|..++.+
T Consensus 42 ~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~ 90 (429)
T COG0172 42 LRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAA 90 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHH
Confidence 34444555555555555542111 2356777777777777776644
No 397
>PRK14154 heat shock protein GrpE; Provisional
Probab=53.20 E-value=1e+02 Score=30.20 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTI 370 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~ 370 (424)
+.+|..+...++.+...++.+...
T Consensus 68 ~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 68 VDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 398
>PRK10963 hypothetical protein; Provisional
Probab=53.18 E-value=60 Score=31.25 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
|.=.|++++.|+.+|..|+.++..|-. ...+|..+-.++..+..
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l 82 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQS 82 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456788888888888888888876543 34556666555555544
No 399
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=53.16 E-value=43 Score=34.54 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+.+|+.+++.|+..+..|..++..++.+...|..+++.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666677777777777777777777777777766654
No 400
>PHA03155 hypothetical protein; Provisional
Probab=53.07 E-value=57 Score=29.51 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqa 391 (424)
++.|..+.+.|..||+.||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666677788888889888843
No 401
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=52.86 E-value=3.3e+02 Score=32.93 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..|.+|+.++...-.+...|..+|.+.|..++.+.|
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q 300 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQ 300 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666655554
No 402
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=52.84 E-value=74 Score=30.10 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 014471 381 PIAEFLIVLLPFLI 394 (424)
Q Consensus 381 EN~ELK~RLqaLEQ 394 (424)
|..|+..+|+.||+
T Consensus 126 e~ee~~~~l~~le~ 139 (175)
T PRK13182 126 EMEEMLERLQKLEA 139 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555554
No 403
>PF14645 Chibby: Chibby family
Probab=52.73 E-value=62 Score=28.77 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.++.+.|+.||.-|+-++..|.
T Consensus 77 ~~~n~~L~EENN~Lklk~elLl 98 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLL 98 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554443
No 404
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.59 E-value=2e+02 Score=34.36 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014471 325 RAKRILANRQSAARSK-ERKMRYISELEQKVQTLQTEA 361 (424)
Q Consensus 325 R~RRiLkNRESAqRSR-eRKK~YieELE~KVq~Lq~EN 361 (424)
++|-.+.+|.+-.|-+ ..|+.|..+||.....+...+
T Consensus 640 ~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~ 677 (1072)
T KOG0979|consen 640 KLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK 677 (1072)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665544 345556666666655544433
No 405
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=52.55 E-value=1.6e+02 Score=32.79 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 333 RQSAARSKERKMRYISELEQK---VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAI 397 (424)
Q Consensus 333 RESAqRSReRKK~YieELE~K---Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaq 397 (424)
|.-...+.+++++|-.||-+- +...+++-..|--++...+++...+..+++.++..+..||+|.|
T Consensus 34 ~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~ 101 (604)
T KOG3564|consen 34 RKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQ 101 (604)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334455777777776666443 33344555556678888999999999999999999999997653
No 406
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.41 E-value=3.2e+02 Score=29.32 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 366 AQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 366 ~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.++..+..+...|..+..+|+++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQL 161 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 407
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=52.33 E-value=1.8e+02 Score=26.20 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQK 353 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~K 353 (424)
.|+-+--+|-- ++++++|+..|+..
T Consensus 65 nP~tvLALLDE-------lE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDE-------LERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 44444445543 33466677777765
No 408
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.31 E-value=2.9e+02 Score=28.62 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVT 369 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~ 369 (424)
+.+.-|+--..-.+--.+|-.+||.++.+|++.|..|..+++
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq 69 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ 69 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555556666666666666665555544433
No 409
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.30 E-value=1.4e+02 Score=25.03 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 331 ANRQSAARSKERKM------RYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 331 kNRESAqRSReRKK------~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
.|.+..+.+-.++. ..+.+|..+...|+.+...|.++...+.++...+..
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 35555555555443 334444445555555555555554444444444443
No 410
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=52.25 E-value=53 Score=35.92 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQ------VSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq------ren~~L~~EN~ELK~RLqaL 392 (424)
++.||.++..|+.+...|..++..-. .....|..|..+++.+|+.+
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVA 621 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999888888888775321 13444455555555444443
No 411
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.17 E-value=3.5e+02 Score=33.02 Aligned_cols=6 Identities=33% Similarity=0.196 Sum_probs=2.5
Q ss_pred HHHHHH
Q 014471 409 FFFREI 414 (424)
Q Consensus 409 ~f~rEI 414 (424)
.|++|+
T Consensus 984 ~~~~e~ 989 (1353)
T TIGR02680 984 GQLREF 989 (1353)
T ss_pred HHHHHH
Confidence 344443
No 412
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.01 E-value=3.1e+02 Score=28.86 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQ 358 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq 358 (424)
+--||.-+|++...++||+.-+.++
T Consensus 351 eerqraeekeq~eaee~~ra~kr~e 375 (445)
T KOG2891|consen 351 EERQRAEEKEQKEAEELERARKREE 375 (445)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666677776555444
No 413
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=51.96 E-value=1.4e+02 Score=33.51 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIA 376 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~ 376 (424)
+-+|=|+...+|..++..|..|..+|..+-+.+|+.+-
T Consensus 24 tldRIKdEfqflqaqyhslkleceKlA~EKteMqRhYv 61 (705)
T KOG0639|consen 24 TLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYV 61 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhee
Confidence 45566778889999999999999999999999888654
No 414
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=51.89 E-value=1.4e+02 Score=29.37 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhhc
Q 014471 408 LFFFREILRGLQV 420 (424)
Q Consensus 408 a~f~rEI~~~lq~ 420 (424)
++.+.|+++.|.|
T Consensus 201 ~~TM~eL~~~l~I 213 (221)
T PF10376_consen 201 KFTMGELIKRLGI 213 (221)
T ss_pred CccHHHHHHHhCC
Confidence 3556777776654
No 415
>PRK14139 heat shock protein GrpE; Provisional
Probab=51.87 E-value=1.3e+02 Score=29.00 Aligned_cols=10 Identities=50% Similarity=0.518 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014471 349 ELEQKVQTLQ 358 (424)
Q Consensus 349 ELE~KVq~Lq 358 (424)
+|+.++..|+
T Consensus 43 ~le~e~~elk 52 (185)
T PRK14139 43 EAEAKAAELQ 52 (185)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 416
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=51.43 E-value=3.6e+02 Score=29.39 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERK-MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILI 399 (424)
Q Consensus 330 LkNRESAqRSReRK-K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLr 399 (424)
++.+.-+.+..+.| +.-+.+|...++.+..|....+......+.+...+..|....|..+..++...+.-
T Consensus 349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433 34578899999999999999999999999999999999999999999888754433
No 417
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=51.37 E-value=3.5e+02 Score=29.38 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFL-IVLLPFLIRAILIVHLF--VFLTLFFFREILR 416 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK-~RLqaLEQqaqLrd~L~--ealta~f~rEI~~ 416 (424)
+.|+.....++.++..-+.++..-..|..+.+ ..++.|+| ..+.-+ +...-.|++||+-
T Consensus 180 kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~Meq---vFe~CQ~fE~~Rl~Ffkeil~ 241 (472)
T KOG2856|consen 180 KKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQ---VFEQCQQFEEKRLQFFKEILL 241 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333 33445543 222222 2333467888874
No 418
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=51.31 E-value=36 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~ 366 (424)
.|+++||..|+.+....+.....|+.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~ 126 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSR 126 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46778888888877765544444333
No 419
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=51.27 E-value=1.2e+02 Score=27.23 Aligned_cols=31 Identities=16% Similarity=-0.048 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+...+..+......|..|..+|+.+|+.|+.
T Consensus 91 v~~~~eilr~~g~~l~~eEe~L~~~le~l~~ 121 (141)
T PF13874_consen 91 VLRKQEILRNRGYALSPEEEELRKRLEALEA 121 (141)
T ss_dssp HHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3344444444545555555555555555443
No 420
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.21 E-value=1.3e+02 Score=26.68 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
|+=+.+=..+...|..+...-...|..++.+++.|.-.|..|..|++.|-.+
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>PF15556 Zwint: ZW10 interactor
Probab=51.15 E-value=2.7e+02 Score=27.97 Aligned_cols=29 Identities=7% Similarity=-0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014471 378 LILPIAEFLIVLLPFLIR-AILIVHLFVFL 406 (424)
Q Consensus 378 L~~EN~ELK~RLqaLEQq-aqLrd~L~eal 406 (424)
-..|...|...|..+.+| .+.+|.|+...
T Consensus 153 ~qqeLe~l~qeL~~lkqQa~qeqdKLQR~q 182 (252)
T PF15556_consen 153 TQQELERLYQELGTLKQQAGQEQDKLQRHQ 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555543 46677777643
No 422
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.82 E-value=63 Score=27.40 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
..=+..|+.++..++.+...|..++..++.+...|..+..+
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666655555555555555544444444333
No 423
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.66 E-value=2.3e+02 Score=27.06 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.|..++..++.....|.....+|+.+|+.+
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 424
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.64 E-value=2e+02 Score=30.72 Aligned_cols=31 Identities=10% Similarity=-0.097 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+|.+.+..+..+...|..+..+|..++..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELE 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 425
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=3.8e+02 Score=31.75 Aligned_cols=25 Identities=24% Similarity=-0.059 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.++++...|..|++||..||+..+.
T Consensus 667 i~~~q~eel~Ke~kElq~rL~~q~K 691 (988)
T KOG2072|consen 667 IKARQIEELEKERKELQSRLQYQEK 691 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557788888999999888876554
No 426
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=50.28 E-value=80 Score=27.17 Aligned_cols=56 Identities=13% Similarity=-0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFL---IRAILIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE---QqaqLrd~L~ealta~f~rEI~~~lq 419 (424)
+.-++..+++++..|..||..|+.+....+ .-.+++..-.+...-.--.-|.+.||
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHHH
No 427
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.26 E-value=48 Score=36.05 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
-++.|..+++.+|.||.-|...
T Consensus 65 elet~k~kcki~qeenr~l~~A 86 (552)
T KOG2129|consen 65 ELETLKGKCKIMQEENRPLLLA 86 (552)
T ss_pred hHHhhhhHHHHHHhcCchhhhh
Confidence 3444445566666666555443
No 428
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=50.16 E-value=5.3e+02 Score=30.99 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=8.7
Q ss_pred hHHHHHhhcccccc
Q 014471 174 DDLFNEYMNLENID 187 (424)
Q Consensus 174 ddl~~~ym~l~~~~ 187 (424)
|.||.=++||++|+
T Consensus 581 dslyGl~LdL~~I~ 594 (1201)
T PF12128_consen 581 DSLYGLSLDLSAID 594 (1201)
T ss_pred cccceeEeehhhcC
Confidence 34666666666664
No 429
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=50.14 E-value=2.1e+02 Score=31.07 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 336 AARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 336 AqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
++.-++.+.+-+.+|+...+.|+........|+..+.+....|..+..++-
T Consensus 61 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~ 111 (448)
T COG1322 61 ARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELA 111 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666667776666666666666666666666665553
No 430
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.11 E-value=2.2e+02 Score=27.68 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014471 325 RAKRILANRQ--SAARSKERKMRY-ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP-FLIRAILIV 400 (424)
Q Consensus 325 R~RRiLkNRE--SAqRSReRKK~Y-ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa-LEQqaqLrd 400 (424)
+++++|.|-- ++.--+-.+..| +++|-..+..+.......+.++..++.+...|..+-..|+.+... .+...++..
T Consensus 1 ~l~~~l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~ 80 (264)
T PF06008_consen 1 QLDSQLQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNN 80 (264)
T ss_pred CHHHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 014471 401 HLFVFLTLFFFREI 414 (424)
Q Consensus 401 ~L~ealta~f~rEI 414 (424)
...+.++....-+.
T Consensus 81 ~t~~t~~~a~~L~~ 94 (264)
T PF06008_consen 81 NTERTLQRAQDLEQ 94 (264)
T ss_pred HHHHHHHHHHHHHH
No 431
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.11 E-value=1.3e+02 Score=24.09 Aligned_cols=7 Identities=57% Similarity=0.748 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 014471 349 ELEQKVQ 355 (424)
Q Consensus 349 ELE~KVq 355 (424)
-|+..+.
T Consensus 56 ~l~~~i~ 62 (123)
T PF02050_consen 56 ALEQAIQ 62 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 432
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.07 E-value=1.8e+02 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=8.0
Q ss_pred chhHHHHhhhcChHHHHHHHH
Q 014471 311 ANEKLAEIALSDPKRAKRILA 331 (424)
Q Consensus 311 ~~~~LaElAl~DpKR~RRiLk 331 (424)
+.+.|.++. .|+..+..++.
T Consensus 5 S~~eL~~Ll-~d~~~l~~~v~ 24 (150)
T PF07200_consen 5 STEELQELL-SDEEKLDAFVK 24 (150)
T ss_dssp TTHHHHHHH-HH-HHHHHHGG
T ss_pred CHHHHHHHH-cCHHHHHHHHH
Confidence 344444443 23344444443
No 433
>PRK01156 chromosome segregation protein; Provisional
Probab=50.01 E-value=2.9e+02 Score=31.41 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.4
Q ss_pred cceeec
Q 014471 66 SVCIDE 71 (424)
Q Consensus 66 ~v~~e~ 71 (424)
.|++++
T Consensus 68 ~V~l~f 73 (895)
T PRK01156 68 EVELEF 73 (895)
T ss_pred EEEEEE
Confidence 344443
No 434
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.84 E-value=62 Score=33.92 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+.+...|+.++..|..++..++.+...+..|...++.+|..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555544433
No 435
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=49.71 E-value=3.3e+02 Score=28.56 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF---LIVLLPFLIRAILIVHLFV 404 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL---K~RLqaLEQqaqLrd~L~e 404 (424)
+.+|..++..++.+...|..++..|+++...+..+-..+ ..++..|+.+......+.+
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777666666665554432 3345556555555444443
No 436
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.66 E-value=3.2e+02 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+.+.|+.+...|..+-++--.+|+.||
T Consensus 1690 rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444454444
No 437
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=49.50 E-value=2.1e+02 Score=26.17 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
..|+.||..|..|-..=..++..+-..++.|..+++.|+.-|..+
T Consensus 17 ~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 17 QGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344444444444333323333333334444444444444333333
No 438
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=49.38 E-value=3.6e+02 Score=29.17 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHhhhhchhHHHHhhhcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHH
Q 014471 304 AELKKIWANEKLAEIALSDPKRAKR-ILANRQSAARSKERKMRYISELEQ---K-----------VQTLQTEATTLSAQV 368 (424)
Q Consensus 304 ~e~KKi~~~~~LaElAl~DpKR~RR-iLkNRESAqRSReRKK~YieELE~---K-----------Vq~Lq~EN~~Ls~Ql 368 (424)
.+++++..-..+-+++...-...+. ++--++-|++.-+=|-..|..|.. . +..|..|...+..++
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~ 290 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEI 290 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-----HHHHHH
Q 014471 369 TILQVSIAELILPIAEFLIVLLP-----FLIRAILIVHLFVFLTL-----FFFREI 414 (424)
Q Consensus 369 ~~Lqren~~L~~EN~ELK~RLqa-----LEQqaqLrd~L~ealta-----~f~rEI 414 (424)
..|+.+...|..|-.+++.++.. -++...+...+....+. ++..|+
T Consensus 291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el 346 (511)
T PF09787_consen 291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQEL 346 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
No 439
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.30 E-value=3.9e+02 Score=32.33 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred CHHHHhhhhchhHHHHhhhcChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 014471 302 NDAELKKIWANEKLAEIALSDPKRAKR--ILANRQSAARSKERKMRYISELEQKVQ-------TLQTEATTLSAQVTILQ 372 (424)
Q Consensus 302 s~~e~KKi~~~~~LaElAl~DpKR~RR--iLkNRESAqRSReRKK~YieELE~KVq-------~Lq~EN~~Ls~Ql~~Lq 372 (424)
|.+|+.|.+.++-..=.-.++..+..+ +..-++.+..--..|.+.+.+|+..+. .+-.+++++..++..++
T Consensus 387 sk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~ 466 (1200)
T KOG0964|consen 387 SKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ 466 (1200)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014471 373 VSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGL 418 (424)
Q Consensus 373 ren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~l 418 (424)
.....|-.|-+.|+..|..+++.- ..-+..+.+..-+-+.+++
T Consensus 467 ~~Rk~lWREE~~l~~~i~~~~~dl---~~~~~~L~~~~~r~v~nGi 509 (1200)
T KOG0964|consen 467 DKRKELWREEKKLRSLIANLEEDL---SRAEKNLRATMNRSVANGI 509 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhhhh
No 440
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=49.30 E-value=1.1e+02 Score=34.32 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMRYISELEQKVQTLQTEATT--------LSAQVTILQVSIAELI---LPIAEFLIVLLPFLI 394 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~--------Ls~Ql~~Lqren~~L~---~EN~ELK~RLqaLEQ 394 (424)
++-+||+-+--+----+.....++..+...|.+|.. |..|..+..++...|. .||+-|+.+|..+.+
T Consensus 587 s~~~~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~l~aelk~lre 664 (673)
T KOG4378|consen 587 SCEKVEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEMLKAELKFLRE 664 (673)
T ss_pred hhhhHHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444443333322333333444444444544443 3334444444444444 555555555554443
No 441
>PF14282 FlxA: FlxA-like protein
Probab=49.07 E-value=95 Score=26.85 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTE 360 (424)
Q Consensus 349 ELE~KVq~Lq~E 360 (424)
.|+.+++.|+.+
T Consensus 23 ~L~~Qi~~Lq~q 34 (106)
T PF14282_consen 23 QLQKQIKQLQEQ 34 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 442
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=49.00 E-value=3.1e+02 Score=31.12 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
+.+.+-|..=++-|+.|...++.|..+...+..++..-+........+..+++.+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556677777777777777777777766666666665566655544
No 443
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=48.93 E-value=3.7e+02 Score=29.36 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 337 qRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
.+-.-+-++.+..|-.+.+.|+++..+|.+|-..|..+.+.|..+-++|.
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445556667777777777777777777777777777777776
No 444
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=48.80 E-value=30 Score=33.55 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=28.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
..|+.++=.-.||-+ |-|-| +||.....|+. ++..|..++..|..|+.+|+..+..
T Consensus 89 L~pRQVavWFQNRRA----RwK~k----qlE~d~~~Lk~-------~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 89 LQPRQVAVWFQNRRA----RWKTK----QLEKDYESLKR-------QLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred CChhHHHHHHhhccc----cccch----hhhhhHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 467777767777643 33322 34555555444 4444444555555555555544443
No 445
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=48.73 E-value=2.4e+02 Score=26.56 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+|.++..|+.....+..++..|......|.....+++.+.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 446
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=48.30 E-value=2.8e+02 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
..++.||..++.|+........++..++.....+..+...|..
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~ 110 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEG 110 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5556666666666555555555555555555544444444443
No 447
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=47.97 E-value=86 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.025 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+...+..++.+...+..||..|+.+-..++++
T Consensus 48 ~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~e 79 (117)
T COG2919 48 GAADVLQLQRQIAAQQAELEKLSARNTALEAE 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666677676666666543
No 448
>PRK15396 murein lipoprotein; Provisional
Probab=47.78 E-value=1.4e+02 Score=25.20 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+++|..+|+.|..+..+|+..+..++.+...-..|-..-.+||
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444444444444333433333333
No 449
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.74 E-value=2.6e+02 Score=28.63 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
++.++.++...+.+...++.+++....+...|..+-..|..++
T Consensus 209 Le~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 209 LEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444
No 450
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=47.61 E-value=2.3e+02 Score=32.33 Aligned_cols=94 Identities=14% Similarity=-0.003 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAAR---SKERKM-RYISELEQKVQTLQT-EATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 322 DpKR~RRiLkNRESAqR---SReRKK-~YieELE~KVq~Lq~-EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
++.-+.-++++|++|++ .-+++- .|++.|-.-++...+ +.+.+.--|...+...+.|..+..+++..+....+++
T Consensus 195 ~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~i~n~g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~ 274 (657)
T KOG1854|consen 195 GWNSVTTALKLPESAADKDATAEKSARNAQEKLVTIANLGETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEA 274 (657)
T ss_pred cchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555568889999888 334433 355666555444433 2233444456666677778888888887777777776
Q ss_pred HHHHHHHH---HHHHHHHHHHH
Q 014471 397 ILIVHLFV---FLTLFFFREIL 415 (424)
Q Consensus 397 qLrd~L~e---alta~f~rEI~ 415 (424)
.+-....+ -....|++|+-
T Consensus 275 ~vv~ky~~~ve~ar~~F~~EL~ 296 (657)
T KOG1854|consen 275 EVVGKYSELVEKARHQFEQELE 296 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444 33446666653
No 451
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=47.49 E-value=1.4e+02 Score=25.21 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLS 365 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls 365 (424)
-+.+|+.++..++.+...+.
T Consensus 8 ~~~~L~~~~~~l~~~i~~~~ 27 (83)
T PF07061_consen 8 EIQELKEQIEQLEKEISELE 27 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 452
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.46 E-value=1.7e+02 Score=29.08 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 372 QVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 372 qren~~L~~EN~ELK~RLqa 391 (424)
+.....|..-|+++|.....
T Consensus 103 q~Tv~AmK~~~k~mK~~ykk 122 (218)
T KOG1655|consen 103 QATVAAMKDTNKEMKKQYKK 122 (218)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 33445555556666555443
No 453
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.41 E-value=2.7e+02 Score=31.88 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=53.5
Q ss_pred hhchhHHHHhhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH------HH
Q 014471 309 IWANEKLAEIAL-SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVT--------IL------QV 373 (424)
Q Consensus 309 i~~~~~LaElAl-~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~--------~L------qr 373 (424)
|+.++-++.+.. .-+|-+-| ---++++..+.|=.+.|.+||..++.+..|...-+++-. +. +.
T Consensus 322 iVKNDLIakVDeL~~E~~vLr--gElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRv 399 (832)
T KOG2077|consen 322 IVKNDLIAKVDELTCEKDVLR--GELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRV 399 (832)
T ss_pred HHHHHHHHHHHhhccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHH
Confidence 455555443321 12444443 234788888888888999999999888887766543311 11 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVLLPFLIRAILI 399 (424)
Q Consensus 374 en~~L~~EN~ELK~RLqaLEQqaqLr 399 (424)
+......|-+++|+||-.|+..-.|.
T Consensus 400 EMaRVLMeRNqYKErLMELqEavrWT 425 (832)
T KOG2077|consen 400 EMARVLMERNQYKERLMELQEAVRWT 425 (832)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 34445566677888886665544443
No 454
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=47.39 E-value=73 Score=28.90 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqa 391 (424)
++.|..+.+.|..||+.||.+|..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666667788899999988864
No 455
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.35 E-value=3.7e+02 Score=28.44 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
++..+++.+++|-.. . ..-...|.+|..+...|+.+...|+++...+.++...+
T Consensus 10 n~~~v~~~l~~R~~~-~--~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 10 NPDLVKESLKARGLS-V--DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred CHHHHHHHHHhcCCC-h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555311 0 00134455666666666666666666666665555443
No 456
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.20 E-value=4e+02 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=8.5
Q ss_pred HHHhhhcChHHHHHHHHH
Q 014471 315 LAEIALSDPKRAKRILAN 332 (424)
Q Consensus 315 LaElAl~DpKR~RRiLkN 332 (424)
|+++-....+++++.|+.
T Consensus 267 l~~l~~~~~~~l~~~L~~ 284 (582)
T PF09731_consen 267 LAELKEEEEEELERALEE 284 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444555555544
No 457
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.04 E-value=1.7e+02 Score=32.76 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
++-.++..++.|...+..++..+++++..|+++...+++++..+.
T Consensus 209 dtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 209 DTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333455555556666666666677777777777777766665543
No 458
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.96 E-value=2.4e+02 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
.-+.+|-.++..|..+|..+..=+..+++....|..+.
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~ 60 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEK 60 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666555555554
No 459
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.84 E-value=2.5e+02 Score=31.27 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|.+.+.+..|...+..++..||.+ |.+.-...+.+|..|.
T Consensus 454 E~ek~~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 454 EKEKESLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHH
Confidence 333333444444444444444332 2223333445555543
No 460
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.68 E-value=94 Score=27.36 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+++.|..+...|..++..|+.+...|.....+++.-+.+++
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555556666666665555554
No 461
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=46.56 E-value=3.2e+02 Score=27.48 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=11.2
Q ss_pred CCCCCCccccccccccCCC
Q 014471 246 IAPTVRHCRSVSMDSYMGN 264 (424)
Q Consensus 246 ~~p~~rH~rS~S~Ds~~~~ 264 (424)
|-|-+|..-|.-+|-.+..
T Consensus 121 icP~rreLYsQcFDElIRq 139 (259)
T KOG4001|consen 121 ICPIRRELYSQCFDELIRQ 139 (259)
T ss_pred cCCCcHHHHHHHHHHHHHH
Confidence 5666666666656655433
No 462
>PRK11281 hypothetical protein; Provisional
Probab=46.53 E-value=6.1e+02 Score=30.72 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH---------------HHHH
Q 014471 303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSA----------ARSKERKMRYISELEQK---------------VQTL 357 (424)
Q Consensus 303 ~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESA----------qRSReRKK~YieELE~K---------------Vq~L 357 (424)
+...+....++.+.++. +.+|-+.+.+-+ ..--+|+.+..+.--.+ ++.+
T Consensus 209 ~~~~~~l~~~~~l~~l~-----~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~ 283 (1113)
T PRK11281 209 DLQRKSLEGNTQLQDLL-----QKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQE 283 (1113)
T ss_pred HHHHHHHhcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 014471 358 QTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAI-LIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 358 q~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaq-Lrd~L~ealta~f~rEI~~~lq 419 (424)
...|..|+.++..+-.+...|..+|...|..++.+.|... +++.+...-.....-+|++.-+
T Consensus 284 ~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~ 346 (1113)
T PRK11281 284 LEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQ 346 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
No 463
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.35 E-value=2.9e+02 Score=29.61 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 358 QTEATTLSAQVTILQV 373 (424)
Q Consensus 358 q~EN~~Ls~Ql~~Lqr 373 (424)
+.|...|+.+|+.+++
T Consensus 275 q~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 275 QNEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4455555555544443
No 464
>PF13879 KIAA1430: KIAA1430 homologue
Probab=46.03 E-value=1.5e+02 Score=24.12 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.++...+.||..|..++....
T Consensus 36 er~~~I~reN~~LL~ki~~I~ 56 (98)
T PF13879_consen 36 ERQREIERENQILLRKIMEIM 56 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888877654
No 465
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.65 E-value=2.9e+02 Score=26.73 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQ---VSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq---ren~~L~~EN~ELK~RLqaL 392 (424)
+.+|+..+-.-+.+...|..++..|. ..-.....|...|+..+..+
T Consensus 49 ~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 49 TSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555544432 22233344444444444443
No 466
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=45.58 E-value=2.2e+02 Score=26.56 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKV 354 (424)
Q Consensus 301 ~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KV 354 (424)
++...++++--++.|.+-. ++..|......|.|-.+||.-|=+.+
T Consensus 28 L~~~ql~~lpL~e~l~~Ai---------~~a~ri~~~~arrRQ~qyIGKLmR~~ 72 (157)
T PF04751_consen 28 LSPKQLAKLPLPEELRDAI---------MEARRITSHEARRRQLQYIGKLMREE 72 (157)
T ss_dssp S-HHHHTTS---HHHHHHH---------HHGGG--SHHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHhhCCCCHHHHHHH---------HHHHHHcccHHHHHHHHHHHHHHHhC
Confidence 4455555555555544321 22333345557889999998887665
No 467
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=45.42 E-value=1e+02 Score=29.56 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014471 377 ELILPIAEFLIVLLPFL 393 (424)
Q Consensus 377 ~L~~EN~ELK~RLqaLE 393 (424)
.+..+..+|+.+|+..+
T Consensus 157 e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 468
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.40 E-value=1e+02 Score=27.07 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014471 350 LEQKVQTLQ 358 (424)
Q Consensus 350 LE~KVq~Lq 358 (424)
|+..+..|+
T Consensus 106 l~~~~~~l~ 114 (140)
T PRK03947 106 LEKALEKLE 114 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
No 469
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=45.38 E-value=5.4e+02 Score=31.49 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 333 RQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 333 RESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|..|..-+.++.+| +++..++..++.+...+..++..++.+...|..+..+|+.++..+.
T Consensus 265 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 265 RRRATRLRSAQTQY-DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444443 4555556666666666666666666655555555555555554443
No 470
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.31 E-value=3.9e+02 Score=28.09 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVF 405 (424)
Q Consensus 326 ~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ea 405 (424)
+.|+-.....+..--..+-+||.. ++..|..+...+..++..++.++..+..-..++...| ++|.+.|...
T Consensus 243 L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L------~~IseeLe~v 313 (359)
T PF10498_consen 243 LDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTREL------AEISEELEQV 313 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHH
Q 014471 406 LTLFFFR 412 (424)
Q Consensus 406 lta~f~r 412 (424)
.+++-++
T Consensus 314 K~emeer 320 (359)
T PF10498_consen 314 KQEMEER 320 (359)
T ss_pred HHHHHHh
No 471
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=45.27 E-value=41 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
...|..||+-|..|+.|-..+...+-. ++..|..+|++|.-+|
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~---EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHA---EIERLQKRNKDLTFKL 44 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccceee
No 472
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=45.20 E-value=1.7e+02 Score=27.60 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~ 377 (424)
.+.++++|+.|+-|.--=+.|-.-..+|..|++..+..+.++..+|+.|......
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=45.19 E-value=4.1e+02 Score=28.33 Aligned_cols=108 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred HhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 306 LKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 306 ~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
.|.+..-.+|.|++ +-+.|+.+.-.--.-..+||.+ +.=-.-+..++.-...+..+++.-...+..|..+|.+|
T Consensus 69 ~kt~larsKLeelC----RelQr~nk~~keE~~~q~k~eE--erRkea~~~fqvtL~diqktla~~~~~n~klre~NieL 142 (391)
T KOG1850|consen 69 LKTELARSKLEELC----RELQRANKQTKEEACAQMKKEE--ERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIEL 142 (391)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhh
Q 014471 386 LIVLLPFLIRAILIVHLFV--FLTLFFFREILRGLQ 419 (424)
Q Consensus 386 K~RLqaLEQqaqLrd~L~e--alta~f~rEI~~~lq 419 (424)
...+..+-.|-+.++..++ ..+.-++.+.+++.+
T Consensus 143 ~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKl 178 (391)
T KOG1850|consen 143 SEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKL 178 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 474
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.15 E-value=3e+02 Score=27.99 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI--------RAILIVHLFVFLTLFFFR 412 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ--------qaqLrd~L~ealta~f~r 412 (424)
+.-|..+..+++.++.....|......|.........|....++||++|.. -.+|-..|++.++.-+++
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~k 244 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=45.12 E-value=1.4e+02 Score=29.66 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYIS-ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 341 eRKK~Yie-ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+.|..|.. |||.....-+.|..+-..++..|..-......|-.|.+.++|.+
T Consensus 7 Rq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~L 59 (214)
T PF07795_consen 7 RQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKL 59 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=45.04 E-value=1.9e+02 Score=25.13 Aligned_cols=79 Identities=6% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 301 ~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
|++.++..+--=..+.++- .--+.+++++..............+.++.|+.+++.|+.+...|...+..|.........
T Consensus 37 Y~~~~l~~l~~I~~lr~~G-~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 37 YSRRDRARLKLILRGKRLG-FSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred cCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.00 E-value=2e+02 Score=30.82 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~lq 419 (424)
++.+.++......|+.+...|+.+ +++++.-+..-..|-+.|.+.||.|. .-++++--.||.++.|
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeql-------Nd~~elHq~Ei~~LKq 283 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQL-------NDLTELHQNEIYNLKQ 283 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
No 478
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=44.98 E-value=1.7e+02 Score=30.25 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATT---LSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFF 410 (424)
Q Consensus 351 E~KVq~Lq~EN~~---Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f 410 (424)
+..++.|+.|..+ |..++..|+.+...|..+|+..+.+|..+..+-.--..-.+-++..|
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
No 479
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.92 E-value=1.3e+02 Score=31.39 Aligned_cols=64 Identities=20% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERKMR---------------YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 330 LkNRESAqRSReRKK~---------------YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|..|.++.+.+.+... +-..|...+.....+|..|..++..|++....+.-+++-|+..+..+.
T Consensus 35 Lqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 35 LQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
No 480
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=44.88 E-value=3.4e+02 Score=30.85 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
++.+-+..++....+-...-++-+.+|+.+...|..+...+...+....+....+..+..++...+..-..+..++-.|+
T Consensus 227 ~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~ 306 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLH 306 (670)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 014471 404 VFLTLF 409 (424)
Q Consensus 404 ealta~ 409 (424)
.-++++
T Consensus 307 N~i~eL 312 (670)
T KOG0239|consen 307 NEILEL 312 (670)
T ss_pred HHHHHh
No 481
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=44.87 E-value=1.5e+02 Score=30.13 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFRE 413 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rE 413 (424)
|.||..+...+..|...|........++...+..+..+|+..+..++....+.+.-++.+.+.....
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEET 67 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 482
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=44.75 E-value=90 Score=33.07 Aligned_cols=50 Identities=14% Similarity=-0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL-IRAILIVHL 402 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE-QqaqLrd~L 402 (424)
+|..|..+..++.++|..-.+++..+..|...+|.-+..|. ++++|++.|
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.70 E-value=2.5e+02 Score=32.13 Aligned_cols=87 Identities=14% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 014471 326 AKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVH-LFV 404 (424)
Q Consensus 326 ~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~-L~e 404 (424)
+++..+-|+.-++-=..=+..++..=.+++.|+.+...|+..-..|..++.......+.|.+|++.+-+..+.+.- |-+
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~ 632 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSE 632 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCH
Q ss_pred HHHHHHHH
Q 014471 405 FLTLFFFR 412 (424)
Q Consensus 405 alta~f~r 412 (424)
|.++++..
T Consensus 633 AEr~~~~E 640 (717)
T PF10168_consen 633 AEREFKKE 640 (717)
T ss_pred HHHHHHHH
No 484
>PRK14159 heat shock protein GrpE; Provisional
Probab=44.68 E-value=2.8e+02 Score=26.46 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 014471 341 ERKMRYISELEQKVQTLQTEA---------TTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFF- 410 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN---------~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f- 410 (424)
+.|+++-.+--....+||.|| ..|..++..+...+..+.++...+|.|. .-|.....+.++..++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~-~rE~e~~~~~a~~~~~~~LLp 81 (176)
T PRK14159 3 EQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRM-EKEKLSAMAYANESFAKDLLD 81 (176)
T ss_pred HHHHHHHHhcccchhhhhhhhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q ss_pred -HHHHHhhhhc
Q 014471 411 -FREILRGLQV 420 (424)
Q Consensus 411 -~rEI~~~lq~ 420 (424)
.+.+.++|+.
T Consensus 82 V~DnlerAl~~ 92 (176)
T PRK14159 82 VLDALEAAVNV 92 (176)
T ss_pred HHhHHHHHHhc
No 485
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=44.68 E-value=55 Score=30.16 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQ-----VTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Q-----l~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+..+...+|-.++.+|..|...++.| -+.|+|+.+.|+.|.++++..+..
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.64 E-value=2.5e+02 Score=27.86 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFRE 413 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rE 413 (424)
.+++...+.|...-..|...+..|..+-+.|..|...|-..-+.+....+-..+-.++..+.|+.|
T Consensus 34 ~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~feke 99 (228)
T PRK06800 34 EEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKE 99 (228)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK14145 heat shock protein GrpE; Provisional
Probab=44.59 E-value=1.7e+02 Score=28.41 Aligned_cols=65 Identities=6% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGL 418 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~l 418 (424)
...+..+..|+.+...|..++..|...+..+.++...+|.|. ++=++.+.+.-.+-|..+++..+
T Consensus 41 ~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~------~kE~e~~~~~a~e~~~~~LLpV~ 105 (196)
T PRK14145 41 QQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRT------EKEKSEMVEYGKEQVILELLPVM 105 (196)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHH
No 488
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=44.50 E-value=1.9e+02 Score=24.29 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRG 417 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~ 417 (424)
|=-+.++.+-.....+..|...++.+-..++.....=..|...++..+-.||++- ..++.-.+.||.++
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h-------~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAH-------RKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
No 489
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=44.47 E-value=3e+02 Score=26.87 Aligned_cols=112 Identities=18% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCHHHHhhhhch--------hHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 014471 301 FNDAELKKIWAN--------EKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQT---LQTEATTLSAQVT 369 (424)
Q Consensus 301 ~s~~e~KKi~~~--------~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~---Lq~EN~~Ls~Ql~ 369 (424)
|+..=++|.+.. .....+......+....- ....-++...-+..|+..|++++.. ++..+..|..++.
T Consensus 117 fS~~VL~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r 195 (247)
T PF14661_consen 117 FSTFVLKKVIKRFEASLPSNHPASALRLAEAFRLKPQD-LHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYR 195 (247)
T ss_pred HHHHHHHHHHHHhhcccccCCCchhhhhhhhhccChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILR 416 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~ 416 (424)
.|.++...+..+. +......++..+..+.+...-..-+..+|.+
T Consensus 196 ~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~k 239 (247)
T PF14661_consen 196 ELSAECAELQAQL---KKLQKSDASNRQLWEQVRNNWSGSLQEKIQK 239 (247)
T ss_pred HHHHHHHHHHHHh---hhhhcchhHHHHHHHHHHHhhchhhHHHHHH
No 490
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.43 E-value=3.1e+02 Score=28.57 Aligned_cols=72 Identities=13% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFV-FLTLFFFREILRGL 418 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~e-alta~f~rEI~~~l 418 (424)
++..|.+++..+.+|..+-........+-.....+..+..+++.......+.++...+ ...+.-.++|++.|
T Consensus 115 ~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~rr~~~~~~e~ee~~~~~~~~~~~ld~L 187 (309)
T TIGR00570 115 LENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDEL 187 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=44.37 E-value=1.3e+02 Score=31.54 Aligned_cols=62 Identities=11% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSA-----QVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLT 407 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~-----Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealt 407 (424)
.++.+...+..+..-+..... ....|+++|+.|..||.+|+.++..+++..+..+.|.+.++
T Consensus 32 ~~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 32 VYEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 492
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=44.28 E-value=3.5e+02 Score=29.42 Aligned_cols=88 Identities=19% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTI-----LQVSIAELILPIAEFLIVLLPFLI-----RAILIV 400 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~-----Lqren~~L~~EN~ELK~RLqaLEQ-----qaqLrd 400 (424)
+||..--.++.+=-.--+.|-.+|..||.-...|+.-+.. +.++...+..+...++..|+.|++ ...|+-
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkK 282 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKK 282 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Q ss_pred HHHHHHHH-HHHHHHHhhhh
Q 014471 401 HLFVFLTL-FFFREILRGLQ 419 (424)
Q Consensus 401 ~L~ealta-~f~rEI~~~lq 419 (424)
-....|+. |-+|++++ +|
T Consensus 283 iWE~EL~~VcEEqqfL~-lQ 301 (426)
T smart00806 283 IWEAELDKVCEEQQFLT-LQ 301 (426)
T ss_pred HHHHHHHHHHHHHHHHH-HH
No 493
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=44.22 E-value=1.2e+02 Score=29.04 Aligned_cols=110 Identities=20% Similarity=0.048 Sum_probs=0.0
Q ss_pred hchhHHHHhhhcChHHHHHHH-----------HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014471 310 WANEKLAEIALSDPKRAKRIL-----------ANRQSAARSKE--------RKMRYISELEQKVQTLQTEAT--TLSAQV 368 (424)
Q Consensus 310 ~~~~~LaElAl~DpKR~RRiL-----------kNRESAqRSRe--------RKK~YieELE~KVq~Lq~EN~--~Ls~Ql 368 (424)
+.+.+|.+++..+.||++-.. +-++||...+. ++.+||..|-..-+.-...++ ++.-+|
T Consensus 22 ~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~~sne~stDpe~Lmev 101 (168)
T KOG3192|consen 22 IDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQTSNELSTDPEFLMEV 101 (168)
T ss_pred CCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCchhhhccCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014471 369 TILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 369 ~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~lq 419 (424)
-.+......+..++.....+-+.-+..+|+.++|-++...--..|-++-.+
T Consensus 102 le~~E~IS~~~De~~l~~lk~q~q~ri~q~~~qlge~~esk~~~~Al~~i~ 152 (168)
T KOG3192|consen 102 LEYHEAISEMDDEEDLKQLKSQNQERIAQCKQQLGEAFESKKYDEALKKIL 152 (168)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
No 494
>PRK14162 heat shock protein GrpE; Provisional
Probab=44.07 E-value=2e+02 Score=27.77 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGL 418 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~l 418 (424)
..+..|+.+...|.+++..++..+..+.++...++.|. ++=++.+.+.-.+-|.++++..+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~------~kE~e~~~~~a~~~~~~~LLpV~ 99 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRY------AKERAQLIKYESQSLAKDVLPAM 99 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHH
No 495
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.86 E-value=1.3e+02 Score=23.90 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQ-VSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq-ren~~L~~EN~ELK~RLqaLEQq 395 (424)
|+..|.++|..+........+|..++..+- .....+.......|..|..+.++
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=43.85 E-value=23 Score=38.65 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
...+-.+...|+ ||+.|+++.+.|+.|..+|+.|+...|+++
T Consensus 20 ~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~~s 61 (489)
T PF11853_consen 20 AAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEKHS 61 (489)
T ss_pred hhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhHhh
No 497
>PRK14140 heat shock protein GrpE; Provisional
Probab=43.58 E-value=2.1e+02 Score=27.61 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHL 402 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L 402 (424)
..|++|+.++..|+.+...|..++..++.++..+......=+..+.....+..+++-|
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.57 E-value=3.5e+02 Score=29.40 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMR-YISELEQKVQTLQTEATTLSA---QVTILQVSIAELILPIAEFLIVLLPFLIRAI 397 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~-YieELE~KVq~Lq~EN~~Ls~---Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaq 397 (424)
||.++-. +.+|.+.-+.-.||.. -+++|-...+.++.+...|.. .+..|+.+...+..+..++-..| .+
T Consensus 299 dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L------s~ 371 (563)
T TIGR00634 299 DPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL------SL 371 (563)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014471 398 LIVHLFVFLTLFFFREILRG 417 (424)
Q Consensus 398 Lrd~L~ealta~f~rEI~~~ 417 (424)
.|....+.+.+.+..++.+.
T Consensus 372 ~R~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 372 IRRKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhC
No 499
>PRK14153 heat shock protein GrpE; Provisional
Probab=43.51 E-value=1.3e+02 Score=29.06 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLFFFREILRGL 418 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~f~rEI~~~l 418 (424)
|.++..+..+...|.+++..|..++..+..+...+|.|. .+=++.+.+.-.+-|..+++..+
T Consensus 32 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~------~kE~e~~~~~a~~~~~~~LLpv~ 93 (194)
T PRK14153 32 EPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRT------AREMEENRKFVLEQVLLDLLEVT 93 (194)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHH
No 500
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=43.43 E-value=68 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
..+.-|+.-...|.+|-..=...-.....+...|..||..|+.+|.-+
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Done!