Query 014471
Match_columns 424
No_of_seqs 197 out of 712
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 4.1E-14 1.4E-18 107.7 6.7 52 324-375 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 2.4E-11 8.2E-16 94.2 10.3 58 323-380 1-58 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 2.1E-11 7.3E-16 93.6 9.5 57 324-380 1-57 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 1.5E-10 5.2E-15 89.2 7.9 56 324-379 1-56 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 9.2E-10 3.1E-14 85.8 6.8 53 322-375 8-60 (63)
6 1gd2_E Transcription factor PA 98.9 2.8E-09 9.6E-14 85.0 8.0 66 321-386 5-70 (70)
7 1ci6_A Transcription factor AT 98.9 3.5E-09 1.2E-13 82.3 7.3 57 324-380 2-58 (63)
8 1gu4_A CAAT/enhancer binding p 98.4 2.2E-06 7.5E-11 69.6 9.8 59 321-379 12-70 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 2.2E-06 7.7E-11 70.9 9.9 61 321-381 12-72 (87)
10 3a5t_A Transcription factor MA 98.3 2.3E-08 7.7E-13 85.6 -4.2 83 302-393 17-99 (107)
11 2wt7_B Transcription factor MA 98.2 7E-06 2.4E-10 68.5 9.5 81 303-392 8-88 (90)
12 2oqq_A Transcription factor HY 97.7 6.4E-05 2.2E-09 54.9 5.6 37 344-380 2-38 (42)
13 1skn_P DNA-binding domain of S 96.4 0.0012 4.1E-08 55.2 1.9 54 300-353 38-91 (92)
14 2jee_A YIIU; FTSZ, septum, coi 96.3 0.046 1.6E-06 44.9 10.8 43 345-387 6-48 (81)
15 2w6a_A ARF GTPase-activating p 94.9 0.093 3.2E-06 41.1 7.4 39 348-386 23-61 (63)
16 3hnw_A Uncharacterized protein 93.9 0.3 1E-05 43.0 9.3 55 341-395 71-125 (138)
17 3efg_A Protein SLYX homolog; x 93.7 0.15 5.2E-06 41.0 6.5 51 345-395 14-64 (78)
18 3a7p_A Autophagy protein 16; c 92.4 2 6.8E-05 38.8 12.4 56 349-406 93-148 (152)
19 2oa5_A Hypothetical protein BQ 92.3 0.2 7E-06 43.1 5.6 24 346-369 9-32 (110)
20 3o0z_A RHO-associated protein 92.3 4 0.00014 37.4 14.4 78 331-415 76-157 (168)
21 2dfs_A Myosin-5A; myosin-V, in 92.2 2.7 9.2E-05 47.4 16.0 53 341-393 987-1043(1080)
22 3oja_B Anopheles plasmodium-re 91.8 2.3 8E-05 42.9 13.6 37 355-391 519-555 (597)
23 3he5_A Synzip1; heterodimeric 91.7 0.63 2.1E-05 34.3 6.8 44 346-389 4-47 (49)
24 3oja_B Anopheles plasmodium-re 91.4 4.2 0.00014 41.0 15.1 47 348-394 505-551 (597)
25 1deb_A APC protein, adenomatou 91.0 1.2 4.2E-05 33.8 7.9 43 347-389 5-47 (54)
26 3hnw_A Uncharacterized protein 90.0 2.4 8.2E-05 37.2 10.4 54 341-394 78-131 (138)
27 2jee_A YIIU; FTSZ, septum, coi 89.9 1.6 5.5E-05 35.8 8.5 56 347-408 22-77 (81)
28 3swy_A Cyclic nucleotide-gated 89.8 1.6 5.4E-05 32.4 7.6 44 349-395 2-45 (46)
29 4ath_A MITF, microphthalmia-as 89.6 1.2 4.2E-05 36.6 7.6 44 344-398 38-81 (83)
30 4emc_A Monopolin complex subun 89.1 2.2 7.5E-05 39.8 9.8 45 345-389 13-57 (190)
31 2oxj_A Hybrid alpha/beta pepti 89.0 0.5 1.7E-05 33.1 4.1 27 346-372 2-28 (34)
32 3cve_A Homer protein homolog 1 88.9 5.4 0.00018 32.0 10.7 45 348-392 3-47 (72)
33 3s9g_A Protein hexim1; cyclin 88.8 3.7 0.00013 35.0 10.1 42 348-389 40-88 (104)
34 2oqq_A Transcription factor HY 88.8 1.3 4.6E-05 32.3 6.4 35 354-388 5-39 (42)
35 3u1c_A Tropomyosin alpha-1 cha 88.7 9.2 0.00031 31.6 13.7 52 339-390 17-68 (101)
36 3m48_A General control protein 88.7 0.46 1.6E-05 33.1 3.7 26 347-372 2-27 (33)
37 1go4_E MAD1 (mitotic arrest de 88.3 0.83 2.9E-05 38.7 5.9 27 346-372 13-39 (100)
38 3cvf_A Homer-3, homer protein 87.9 3.2 0.00011 33.8 8.9 45 348-392 9-53 (79)
39 2dfs_A Myosin-5A; myosin-V, in 87.7 4.3 0.00015 45.8 12.8 37 350-386 982-1018(1080)
40 4ati_A MITF, microphthalmia-as 87.2 0.27 9.1E-06 42.1 2.3 25 374-398 92-116 (118)
41 1kd8_B GABH BLL, GCN4 acid bas 87.1 1 3.5E-05 31.9 4.8 28 346-373 2-29 (36)
42 3c3f_A Alpha/beta peptide with 86.9 0.79 2.7E-05 32.1 4.1 28 346-373 2-29 (34)
43 3swf_A CGMP-gated cation chann 86.5 2.3 7.8E-05 34.4 7.2 46 348-396 3-48 (74)
44 3na7_A HP0958; flagellar bioge 86.5 18 0.00062 33.7 14.6 26 341-366 49-74 (256)
45 3s4r_A Vimentin; alpha-helix, 86.5 7.5 0.00025 31.9 10.5 41 353-393 24-69 (93)
46 2v66_B Nuclear distribution pr 86.3 11 0.00037 32.4 11.7 33 350-382 40-72 (111)
47 1kd8_A GABH AIV, GCN4 acid bas 86.0 0.89 3E-05 32.2 4.0 29 346-374 2-30 (36)
48 1nkp_B MAX protein, MYC proto- 85.8 0.92 3.1E-05 36.0 4.6 25 344-368 46-70 (83)
49 3mq7_A Bone marrow stromal ant 85.6 3.8 0.00013 35.8 8.6 38 353-390 72-109 (121)
50 3c3g_A Alpha/beta peptide with 85.6 1.4 4.6E-05 30.8 4.7 26 347-372 2-27 (33)
51 1wle_A Seryl-tRNA synthetase; 85.1 8.8 0.0003 39.9 12.7 19 376-394 119-137 (501)
52 1wlq_A Geminin; coiled-coil; 2 84.5 5.1 0.00018 33.0 8.5 30 358-387 37-66 (83)
53 2bni_A General control protein 84.5 1.1 3.9E-05 31.4 3.9 27 346-372 2-28 (34)
54 3cvf_A Homer-3, homer protein 84.3 2.3 7.8E-05 34.7 6.3 51 356-406 3-54 (79)
55 2wt7_B Transcription factor MA 84.3 2 6.8E-05 35.8 6.0 33 362-394 51-83 (90)
56 3m91_A Proteasome-associated A 84.1 2.9 9.9E-05 31.4 6.3 37 353-389 10-46 (51)
57 1t2k_D Cyclic-AMP-dependent tr 84.1 3 0.0001 31.4 6.6 26 368-393 24-49 (61)
58 2v71_A Nuclear distribution pr 83.9 16 0.00053 34.0 12.5 29 367-395 89-117 (189)
59 3ghg_A Fibrinogen alpha chain; 83.8 3.7 0.00013 43.6 9.2 53 337-389 102-154 (562)
60 2wq1_A General control protein 83.8 1.8 6.3E-05 30.1 4.7 27 347-373 2-28 (33)
61 2hy6_A General control protein 83.6 1.3 4.4E-05 31.1 3.9 28 346-373 2-29 (34)
62 1nlw_A MAD protein, MAX dimeri 83.5 2 6.8E-05 34.4 5.6 32 343-374 45-76 (80)
63 2yy0_A C-MYC-binding protein; 83.5 2.1 7.1E-05 32.2 5.3 28 362-389 22-49 (53)
64 1uo4_A General control protein 83.0 1.4 4.8E-05 30.9 3.9 27 346-372 2-28 (34)
65 2kz5_A Transcription factor NF 82.9 0.089 3E-06 44.0 -2.6 47 300-346 42-88 (91)
66 1ik9_A DNA repair protein XRCC 82.8 18 0.00063 33.7 12.7 36 349-384 136-171 (213)
67 1t6f_A Geminin; coiled-coil, c 82.6 1.9 6.7E-05 30.6 4.5 28 359-386 7-34 (37)
68 3vkg_A Dynein heavy chain, cyt 82.5 21 0.00071 45.0 16.2 36 360-395 2036-2071(3245)
69 3u59_A Tropomyosin beta chain; 82.5 19 0.00065 29.5 13.7 53 339-391 17-69 (101)
70 3oja_A Leucine-rich immune mol 82.2 22 0.00075 35.2 13.8 40 354-393 423-462 (487)
71 3vmx_A Voltage-gated hydrogen 82.1 5.6 0.00019 29.8 7.1 38 351-388 3-40 (48)
72 2ve7_C Kinetochore protein NUF 82.0 2.6 8.8E-05 40.1 6.7 67 316-389 112-178 (250)
73 2v4h_A NF-kappa-B essential mo 80.2 24 0.00081 30.4 11.3 60 333-392 33-102 (110)
74 2fic_A Bridging integrator 1; 80.1 34 0.0011 31.1 13.2 70 322-394 142-211 (251)
75 3m9b_A Proteasome-associated A 80.1 2.3 8E-05 41.1 5.7 40 347-386 56-95 (251)
76 3s9g_A Protein hexim1; cyclin 79.9 7.6 0.00026 33.1 8.0 28 345-372 65-92 (104)
77 3qne_A Seryl-tRNA synthetase, 79.8 12 0.00039 39.1 11.1 43 353-395 48-93 (485)
78 3a2a_A Voltage-gated hydrogen 79.4 4.9 0.00017 31.0 6.1 37 351-387 10-46 (58)
79 1nkp_A C-MYC, MYC proto-oncoge 79.3 4.8 0.00017 32.6 6.6 19 344-362 51-69 (88)
80 3a7p_A Autophagy protein 16; c 79.3 18 0.00062 32.6 10.8 47 349-395 79-125 (152)
81 1fmh_A General control protein 79.3 3.2 0.00011 28.4 4.5 28 347-374 3-30 (33)
82 2wvr_A Geminin; DNA replicatio 79.1 12 0.00039 35.5 9.8 31 359-389 115-145 (209)
83 1ses_A Seryl-tRNA synthetase; 78.9 30 0.001 34.9 13.6 69 322-395 10-86 (421)
84 3i00_A HIP-I, huntingtin-inter 78.9 7.5 0.00026 33.6 7.9 47 339-385 34-80 (120)
85 4etp_A Kinesin-like protein KA 78.8 5.7 0.0002 39.9 8.3 52 355-409 6-57 (403)
86 2xdj_A Uncharacterized protein 78.8 14 0.00049 30.0 9.1 43 347-389 22-64 (83)
87 2eqb_B RAB guanine nucleotide 78.8 16 0.00054 30.8 9.6 39 348-386 15-53 (97)
88 1ic2_A Tropomyosin alpha chain 78.6 23 0.00077 28.0 11.6 46 344-389 19-64 (81)
89 1ci6_A Transcription factor AT 78.5 9.7 0.00033 29.1 7.7 29 367-395 24-52 (63)
90 3q8t_A Beclin-1; autophagy, AT 78.3 27 0.00093 28.7 12.1 48 347-394 6-53 (96)
91 1jnm_A Proto-oncogene C-JUN; B 78.3 2.5 8.4E-05 32.1 4.2 26 368-393 24-49 (62)
92 2dq0_A Seryl-tRNA synthetase; 78.2 31 0.0011 35.2 13.6 43 353-395 46-91 (455)
93 2wt7_A Proto-oncogene protein 78.2 20 0.00068 27.2 9.5 27 368-394 25-51 (63)
94 3o0z_A RHO-associated protein 78.0 31 0.001 31.6 12.0 56 334-391 25-80 (168)
95 3mq9_A Bone marrow stromal ant 77.9 19 0.00064 35.6 11.6 23 345-367 397-419 (471)
96 2fxo_A Myosin heavy chain, car 77.1 24 0.00082 30.1 10.6 7 382-388 85-91 (129)
97 3m0d_C TNF receptor-associated 76.2 21 0.00072 27.4 9.1 52 343-394 4-55 (65)
98 3a7o_A Autophagy protein 16; c 75.7 11 0.00036 30.5 7.3 28 367-394 47-74 (75)
99 1am9_A Srebp-1A, protein (ster 75.7 4 0.00014 32.5 5.0 21 370-390 54-74 (82)
100 1uii_A Geminin; human, DNA rep 75.7 15 0.00052 30.2 8.5 30 359-388 46-75 (83)
101 2zxx_A Geminin; coiled-coil, c 75.7 6 0.0002 32.3 6.0 31 359-389 34-64 (79)
102 2c9l_Y EB1, zebra, BZLF1 trans 75.7 15 0.0005 28.5 7.8 36 330-365 7-42 (63)
103 3u1c_A Tropomyosin alpha-1 cha 75.6 33 0.0011 28.3 14.7 51 345-395 30-80 (101)
104 3uux_B Mitochondrial division 75.3 23 0.00078 34.2 10.9 51 345-395 177-227 (242)
105 2yy0_A C-MYC-binding protein; 75.0 5.7 0.00019 29.8 5.3 29 353-381 20-48 (53)
106 3m9b_A Proteasome-associated A 74.7 2.8 9.7E-05 40.5 4.6 43 351-393 53-95 (251)
107 4emc_A Monopolin complex subun 74.6 24 0.00082 32.9 10.5 51 346-396 7-57 (190)
108 1ik9_A DNA repair protein XRCC 74.3 32 0.0011 32.0 11.5 39 343-381 137-175 (213)
109 1deq_A Fibrinogen (alpha chain 73.3 13 0.00046 37.9 9.2 66 324-389 91-157 (390)
110 1jcd_A Major outer membrane li 73.3 18 0.00063 27.2 7.8 30 347-376 6-35 (52)
111 2r2v_A GCN4 leucine zipper; co 73.2 6 0.00021 27.7 4.7 27 347-373 3-29 (34)
112 1a93_B MAX protein, coiled coi 73.0 5 0.00017 28.2 4.2 29 364-392 5-33 (34)
113 3u06_A Protein claret segregat 72.8 11 0.00037 38.2 8.5 51 355-408 6-56 (412)
114 1gd2_E Transcription factor PA 72.8 18 0.00062 28.6 8.0 28 366-393 36-63 (70)
115 3oja_A Leucine-rich immune mol 72.7 34 0.0012 33.9 12.0 15 371-385 447-461 (487)
116 3tnu_B Keratin, type II cytosk 72.3 27 0.00091 29.7 9.7 29 347-375 38-66 (129)
117 3q0x_A Centriole protein; cent 71.8 17 0.0006 34.5 9.2 59 321-385 160-218 (228)
118 3tnu_A Keratin, type I cytoske 71.2 35 0.0012 29.0 10.2 26 347-372 40-65 (131)
119 3mq7_A Bone marrow stromal ant 71.0 26 0.00089 30.6 9.2 17 374-390 72-88 (121)
120 2oto_A M protein; helical coil 70.0 54 0.0019 28.5 11.4 31 348-378 53-83 (155)
121 1dip_A Delta-sleep-inducing pe 69.9 4.5 0.00015 32.9 4.0 25 362-386 18-42 (78)
122 3tnu_A Keratin, type I cytoske 69.5 24 0.00082 30.1 8.8 30 346-375 46-75 (131)
123 3gp4_A Transcriptional regulat 69.3 54 0.0018 28.1 11.6 33 300-333 40-72 (142)
124 1am9_A Srebp-1A, protein (ster 69.3 23 0.0008 28.0 8.1 24 345-368 50-73 (82)
125 3tnu_B Keratin, type II cytosk 69.1 52 0.0018 27.8 11.7 29 347-375 45-73 (129)
126 2v4h_A NF-kappa-B essential mo 68.9 32 0.0011 29.6 9.3 23 348-370 34-56 (110)
127 3bas_A Myosin heavy chain, str 68.9 44 0.0015 26.9 12.4 46 348-393 38-83 (89)
128 2lw1_A ABC transporter ATP-bin 68.8 19 0.00066 28.8 7.6 48 346-393 23-76 (89)
129 1zme_C Proline utilization tra 68.4 4.3 0.00015 30.1 3.4 25 344-368 43-67 (70)
130 3htk_A Structural maintenance 68.2 29 0.00099 25.4 7.9 28 343-370 10-37 (60)
131 1wt6_A Myotonin-protein kinase 67.8 50 0.0017 27.1 10.3 57 332-391 14-70 (81)
132 2v66_B Nuclear distribution pr 67.6 59 0.002 27.9 13.4 27 368-394 37-63 (111)
133 2xdj_A Uncharacterized protein 67.4 48 0.0017 26.8 10.3 47 348-394 9-55 (83)
134 1wle_A Seryl-tRNA synthetase; 66.8 1.1E+02 0.0038 31.8 14.7 35 345-379 70-104 (501)
135 3m91_A Proteasome-associated A 66.7 23 0.0008 26.5 7.1 34 349-382 13-46 (51)
136 1dip_A Delta-sleep-inducing pe 66.5 4.6 0.00016 32.8 3.4 23 344-366 21-43 (78)
137 4h22_A Leucine-rich repeat fli 66.4 26 0.00088 29.9 8.1 14 319-332 5-18 (103)
138 1nkp_A C-MYC, MYC proto-oncoge 66.2 17 0.00059 29.3 6.8 23 370-392 63-85 (88)
139 2ocy_A RAB guanine nucleotide 65.7 46 0.0016 29.9 10.1 47 346-392 45-91 (154)
140 2dnx_A Syntaxin-12; snare, HAB 65.7 24 0.00084 30.0 8.1 46 347-392 30-77 (130)
141 3efg_A Protein SLYX homolog; x 65.2 23 0.00078 28.3 7.2 45 348-392 10-54 (78)
142 4h22_A Leucine-rich repeat fli 64.9 65 0.0022 27.4 11.1 38 348-385 40-77 (103)
143 2dgc_A Protein (GCN4); basic d 64.7 29 0.001 26.6 7.5 26 368-393 32-57 (63)
144 1ic2_A Tropomyosin alpha chain 64.6 50 0.0017 26.0 11.3 48 348-395 9-56 (81)
145 2oto_A M protein; helical coil 64.2 72 0.0025 27.7 11.9 8 351-358 63-70 (155)
146 2wuj_A Septum site-determining 64.2 6.6 0.00023 29.5 3.7 27 346-372 28-54 (57)
147 3e98_A GAF domain of unknown f 64.0 15 0.00052 34.7 7.0 45 346-394 66-110 (252)
148 3k29_A Putative uncharacterize 63.6 91 0.0031 28.6 16.5 45 304-350 19-63 (169)
149 3nmd_A CGMP dependent protein 63.6 28 0.00097 27.9 7.4 26 344-369 39-64 (72)
150 3ghg_A Fibrinogen alpha chain; 63.2 37 0.0013 36.1 10.3 18 328-345 75-92 (562)
151 3qh9_A Liprin-beta-2; coiled-c 63.0 62 0.0021 26.5 10.2 50 352-401 19-68 (81)
152 3ol1_A Vimentin; structural ge 62.0 72 0.0024 26.9 12.5 13 404-416 100-112 (119)
153 3he5_B Synzip2; heterodimeric 62.0 43 0.0015 24.8 7.6 26 361-386 5-30 (52)
154 1dh3_A Transcription factor CR 61.2 12 0.00041 28.0 4.7 26 368-393 24-49 (55)
155 1nkp_B MAX protein, MYC proto- 61.2 19 0.00066 28.2 6.1 20 371-390 59-78 (83)
156 1joc_A EEA1, early endosomal a 61.0 46 0.0016 28.2 8.9 24 349-372 15-38 (125)
157 1jcd_A Major outer membrane li 61.0 43 0.0015 25.2 7.6 32 352-383 4-35 (52)
158 3htk_A Structural maintenance 60.8 46 0.0016 24.3 8.5 46 347-392 7-52 (60)
159 2dq3_A Seryl-tRNA synthetase; 60.6 29 0.00099 35.0 8.8 71 322-395 10-90 (425)
160 1ytz_T Troponin T; muscle, THI 60.4 78 0.0027 26.8 11.0 49 333-381 16-71 (107)
161 2j5u_A MREC protein; bacterial 60.1 3.6 0.00012 38.9 2.0 12 376-387 46-57 (255)
162 3u59_A Tropomyosin beta chain; 58.4 74 0.0025 25.9 14.3 42 348-389 33-74 (101)
163 1gu4_A CAAT/enhancer binding p 57.9 35 0.0012 27.4 7.2 23 371-393 41-63 (78)
164 2xu6_A MDV1 coiled coil; prote 57.5 22 0.00075 28.6 5.8 46 346-391 22-67 (72)
165 2zvf_A Alanyl-tRNA synthetase; 57.4 28 0.00096 29.9 7.1 27 363-389 29-55 (171)
166 2er8_A Regulatory protein Leu3 56.7 5.8 0.0002 29.7 2.3 22 344-365 48-69 (72)
167 1m1j_A Fibrinogen alpha subuni 56.6 90 0.0031 32.8 11.6 63 324-386 89-152 (491)
168 1lwu_C Fibrinogen gamma chain; 56.4 29 0.00099 34.4 7.8 20 350-369 17-36 (323)
169 2zqm_A Prefoldin beta subunit 56.3 39 0.0014 27.2 7.4 20 338-357 27-46 (117)
170 1gmj_A ATPase inhibitor; coile 55.8 85 0.0029 25.8 9.4 23 371-393 56-78 (84)
171 2w83_C C-JUN-amino-terminal ki 55.8 19 0.00067 29.2 5.3 45 350-394 7-58 (77)
172 1lwu_C Fibrinogen gamma chain; 55.8 22 0.00075 35.2 6.8 41 353-393 6-46 (323)
173 3cve_A Homer protein homolog 1 55.6 77 0.0026 25.3 9.8 32 348-379 10-41 (72)
174 1cii_A Colicin IA; bacteriocin 55.6 2.1E+02 0.0073 30.3 16.0 43 343-385 361-403 (602)
175 1uix_A RHO-associated kinase; 55.5 78 0.0027 25.3 10.1 34 350-383 2-35 (71)
176 4e61_A Protein BIM1; EB1-like 55.4 54 0.0019 28.0 8.2 16 378-393 23-38 (106)
177 1hjb_A Ccaat/enhancer binding 54.9 67 0.0023 26.3 8.5 26 370-395 40-65 (87)
178 1f5n_A Interferon-induced guan 54.7 2E+02 0.007 30.3 14.3 7 410-416 572-578 (592)
179 1wt6_A Myotonin-protein kinase 54.7 58 0.002 26.7 7.9 6 349-354 18-23 (81)
180 4b4t_K 26S protease regulatory 54.5 20 0.00069 36.3 6.5 29 361-389 44-72 (428)
181 3trt_A Vimentin; cytoskeleton, 54.0 72 0.0025 24.4 9.4 14 380-393 56-69 (77)
182 3u06_A Protein claret segregat 54.0 39 0.0013 34.1 8.5 31 362-392 6-36 (412)
183 2oa5_A Hypothetical protein BQ 53.7 26 0.00091 30.1 6.1 22 369-390 11-32 (110)
184 4dzn_A Coiled-coil peptide CC- 53.3 27 0.00093 23.9 4.8 25 370-394 6-30 (33)
185 1hlo_A Protein (transcription 53.0 11 0.00038 29.5 3.4 19 368-386 59-77 (80)
186 3viq_B Mating-type switching p 53.0 71 0.0024 26.3 8.3 19 350-368 6-24 (85)
187 1nlw_A MAD protein, MAX dimeri 52.5 48 0.0016 26.3 7.1 25 366-390 54-78 (80)
188 3lss_A Seryl-tRNA synthetase; 51.7 65 0.0022 33.5 9.8 13 382-394 113-125 (484)
189 2wuj_A Septum site-determining 51.6 13 0.00043 28.0 3.4 25 370-394 31-55 (57)
190 1s1c_X RHO-associated, coiled- 51.5 91 0.0031 24.9 10.5 32 349-380 3-34 (71)
191 1fxk_C Protein (prefoldin); ar 51.0 50 0.0017 27.5 7.4 24 349-372 99-122 (133)
192 3ol1_A Vimentin; structural ge 50.9 1.1E+02 0.0038 25.7 14.3 27 368-394 71-97 (119)
193 3nmd_A CGMP dependent protein 50.0 38 0.0013 27.2 6.0 13 349-361 37-49 (72)
194 1a93_B MAX protein, coiled coi 49.8 24 0.00082 24.7 4.2 24 352-375 7-30 (34)
195 2ve7_C Kinetochore protein NUF 49.4 9.4 0.00032 36.2 2.9 53 331-383 134-186 (250)
196 3i00_A HIP-I, huntingtin-inter 49.0 63 0.0022 27.8 7.8 47 348-394 36-82 (120)
197 2no2_A HIP-I, huntingtin-inter 48.9 1.2E+02 0.0041 25.5 10.5 23 336-358 20-42 (107)
198 3bbp_D GRIP and coiled-coil do 48.7 16 0.00056 29.3 3.7 47 348-394 18-64 (71)
199 2xv5_A Lamin-A/C; structural p 48.5 98 0.0034 24.5 8.3 22 340-361 7-28 (74)
200 1ses_A Seryl-tRNA synthetase; 48.2 1.7E+02 0.0058 29.4 12.0 26 354-379 30-55 (421)
201 3m0a_A TNF receptor-associated 48.1 84 0.0029 23.5 9.2 48 347-394 7-54 (66)
202 1p9i_A Cortexillin I/GCN4 hybr 48.0 24 0.00083 23.8 3.9 13 377-389 10-22 (31)
203 1g6u_A Domain swapped dimer; d 47.8 74 0.0025 23.3 6.7 25 368-392 22-46 (48)
204 2l5g_B Putative uncharacterize 47.7 51 0.0018 24.0 5.9 32 364-395 7-38 (42)
205 1gk6_A Vimentin; intermediate 46.6 54 0.0019 24.6 6.2 41 349-389 4-44 (59)
206 1zxa_A CGMP-dependent protein 46.4 28 0.00097 27.5 4.8 32 342-373 22-53 (67)
207 2ve7_A Kinetochore protein HEC 46.4 27 0.00092 34.0 5.7 30 351-380 184-213 (315)
208 1go4_E MAD1 (mitotic arrest de 46.3 34 0.0012 28.9 5.5 31 360-390 13-43 (100)
209 3uux_B Mitochondrial division 46.0 1E+02 0.0035 29.7 9.4 46 345-397 163-208 (242)
210 1fxk_A Prefoldin; archaeal pro 45.8 51 0.0017 26.2 6.4 19 339-357 23-41 (107)
211 2dq0_A Seryl-tRNA synthetase; 45.7 1E+02 0.0035 31.5 10.0 34 345-378 31-64 (455)
212 3ra3_B P2F; coiled coil domain 45.6 17 0.00058 24.1 2.8 15 357-371 5-19 (28)
213 4b4t_K 26S protease regulatory 45.4 32 0.0011 34.8 6.3 40 347-386 44-83 (428)
214 3gpv_A Transcriptional regulat 45.3 1E+02 0.0034 26.5 8.6 33 300-333 54-86 (148)
215 1lrz_A FEMA, factor essential 44.6 56 0.0019 32.1 7.8 24 345-368 247-270 (426)
216 3bas_A Myosin heavy chain, str 44.5 1.2E+02 0.0041 24.3 11.2 44 345-388 14-57 (89)
217 4ani_A Protein GRPE; chaperone 44.4 1.1E+02 0.0037 28.7 9.2 13 348-360 69-81 (213)
218 2ve7_A Kinetochore protein HEC 44.2 24 0.00081 34.4 4.9 9 175-183 72-80 (315)
219 1m1j_B Fibrinogen beta chain; 44.2 2.1E+02 0.0072 29.7 12.2 9 346-354 122-130 (464)
220 3w03_C DNA repair protein XRCC 44.0 44 0.0015 30.9 6.4 10 97-106 11-20 (184)
221 2v71_A Nuclear distribution pr 43.9 2E+02 0.0068 26.6 15.9 40 347-386 90-129 (189)
222 3ibp_A Chromosome partition pr 43.8 51 0.0017 32.7 7.1 35 347-381 5-39 (302)
223 3cl3_D NF-kappa-B essential mo 43.1 62 0.0021 28.6 6.9 10 401-410 87-96 (130)
224 3mq9_A Bone marrow stromal ant 42.9 2.4E+02 0.0082 27.6 12.0 10 174-183 203-212 (471)
225 2fxo_A Myosin heavy chain, car 42.9 1.5E+02 0.0052 25.0 12.6 45 349-393 38-89 (129)
226 3jsv_C NF-kappa-B essential mo 42.7 1.5E+02 0.0051 24.8 9.7 48 330-377 8-58 (94)
227 1fmh_A General control protein 42.0 33 0.0011 23.4 3.9 27 368-394 3-29 (33)
228 3he4_A Synzip6; heterodimeric 41.8 36 0.0012 25.6 4.4 32 348-379 20-51 (56)
229 3ibp_A Chromosome partition pr 41.8 1.5E+02 0.0052 29.3 10.2 24 395-419 81-104 (302)
230 3qne_A Seryl-tRNA synthetase, 41.3 84 0.0029 32.7 8.7 55 322-380 14-68 (485)
231 3w03_C DNA repair protein XRCC 40.9 63 0.0021 29.8 6.9 8 321-328 137-144 (184)
232 4dzn_A Coiled-coil peptide CC- 40.5 57 0.0019 22.3 4.8 23 364-386 7-29 (33)
233 3oa7_A Head morphogenesis prot 40.2 92 0.0032 29.4 7.9 34 360-393 38-71 (206)
234 3plt_A Sphingolipid long chain 40.1 2.5E+02 0.0087 26.8 13.9 61 329-394 98-159 (234)
235 2xus_A Breast cancer metastasi 39.9 83 0.0028 23.5 6.1 24 341-368 6-29 (49)
236 1fxk_C Protein (prefoldin); ar 39.9 1.2E+02 0.0042 25.1 8.1 31 349-379 92-122 (133)
237 1joc_A EEA1, early endosomal a 39.8 1.7E+02 0.0058 24.7 9.0 16 374-389 19-34 (125)
238 2xv5_A Lamin-A/C; structural p 39.5 1.3E+02 0.0046 23.7 7.8 31 349-379 9-39 (74)
239 3tq2_A KE1; parallel three hel 39.2 81 0.0028 21.9 5.5 30 363-392 5-34 (36)
240 3mtu_A Tropomyosin alpha-1 cha 39.2 1.3E+02 0.0046 23.6 7.7 44 347-390 4-47 (75)
241 3hrn_A Transient receptor pote 38.9 1.4E+02 0.0048 23.5 10.0 56 359-414 6-62 (64)
242 2p22_C Protein SRN2; endosome, 38.8 2.3E+02 0.0079 25.9 11.5 74 300-378 37-112 (192)
243 3he5_A Synzip1; heterodimeric 38.6 1.1E+02 0.0039 22.3 6.6 16 371-386 8-23 (49)
244 3ljm_A Coil Ser L9C; de novo d 38.5 55 0.0019 22.1 4.5 22 348-369 4-25 (31)
245 3viq_B Mating-type switching p 38.4 1.4E+02 0.0049 24.5 7.9 23 345-367 8-30 (85)
246 4ani_A Protein GRPE; chaperone 38.2 1.5E+02 0.0051 27.7 9.1 18 349-366 63-80 (213)
247 4e61_A Protein BIM1; EB1-like 38.1 1.9E+02 0.0064 24.7 11.0 16 357-372 23-38 (106)
248 1t3j_A Mitofusin 1; coiled coi 37.9 1.5E+02 0.0051 24.9 8.1 14 348-361 50-63 (96)
249 1deb_A APC protein, adenomatou 37.7 1.3E+02 0.0045 22.8 7.9 31 363-393 7-37 (54)
250 3trt_A Vimentin; cytoskeleton, 37.6 1.3E+02 0.0046 22.9 8.6 40 347-386 37-76 (77)
251 3okq_A BUD site selection prot 37.6 2.2E+02 0.0076 25.3 13.8 60 332-391 8-79 (141)
252 3e98_A GAF domain of unknown f 37.3 73 0.0025 29.9 7.0 16 375-390 98-113 (252)
253 2dq3_A Seryl-tRNA synthetase; 37.2 70 0.0024 32.2 7.2 54 331-384 9-62 (425)
254 1fmh_B General control protein 37.1 57 0.0019 22.3 4.4 26 369-394 4-29 (33)
255 3iox_A AGI/II, PA; alpha helix 36.8 3.3E+02 0.011 28.7 12.2 71 337-409 5-75 (497)
256 2efr_A General control protein 36.7 2.3E+02 0.0079 25.3 11.7 59 331-389 56-114 (155)
257 3he4_A Synzip6; heterodimeric 36.3 1.1E+02 0.0036 23.0 6.2 36 359-394 17-52 (56)
258 1p9i_A Cortexillin I/GCN4 hybr 36.2 34 0.0012 23.1 3.2 25 348-372 2-26 (31)
259 1zhc_A Hypothetical protein HP 36.0 57 0.002 25.7 5.1 20 375-394 46-65 (76)
260 2w83_C C-JUN-amino-terminal ki 35.8 1.8E+02 0.006 23.7 9.2 25 362-386 33-57 (77)
261 2no2_A HIP-I, huntingtin-inter 35.8 1.9E+02 0.0066 24.1 10.3 18 348-365 25-42 (107)
262 1fzc_C Fibrin; blood coagulati 35.8 18 0.00063 35.7 2.7 31 346-376 5-35 (319)
263 2oxj_A Hybrid alpha/beta pepti 35.5 72 0.0025 22.3 4.8 19 371-389 6-24 (34)
264 3he4_B Synzip5; heterodimeric 35.5 1E+02 0.0036 22.3 5.9 14 344-357 9-22 (46)
265 1r8e_A Multidrug-efflux transp 35.4 79 0.0027 28.6 6.7 32 301-333 45-76 (278)
266 2xnx_M M protein, M1-BC1; cell 35.2 1.8E+02 0.0061 26.1 8.7 33 371-403 85-117 (146)
267 2i1j_A Moesin; FERM, coiled-co 34.9 58 0.002 34.1 6.4 40 347-386 337-376 (575)
268 4fla_A Regulation of nuclear P 34.8 2.4E+02 0.0082 24.9 10.2 59 345-403 86-145 (152)
269 2akf_A Coronin-1A; coiled coil 34.6 50 0.0017 22.6 3.8 11 350-360 4-14 (32)
270 1s94_A S-syntaxin; three helix 34.6 2.3E+02 0.0078 24.6 10.8 13 396-408 129-141 (180)
271 2zdi_C Prefoldin subunit alpha 34.4 15 0.0005 31.8 1.5 44 348-391 5-51 (151)
272 2aze_A Transcription factor DP 34.2 1.4E+02 0.0046 27.1 7.8 22 337-358 18-39 (155)
273 4gkw_A Spindle assembly abnorm 34.1 1.7E+02 0.0058 26.3 8.3 24 349-372 102-125 (167)
274 1s1c_X RHO-associated, coiled- 34.0 1.4E+02 0.0049 23.8 7.0 20 364-383 4-23 (71)
275 3a2a_A Voltage-gated hydrogen 33.7 1.1E+02 0.0038 23.6 6.1 13 371-383 16-28 (58)
276 2lw1_A ABC transporter ATP-bin 33.3 1.6E+02 0.0056 23.2 7.5 46 347-392 31-82 (89)
277 2lz1_A Nuclear factor erythroi 33.3 0.69 2.4E-05 38.6 -6.6 45 301-345 43-87 (90)
278 2gkw_A TNF receptor-associated 33.2 67 0.0023 28.4 5.7 23 348-370 3-25 (192)
279 2zdi_C Prefoldin subunit alpha 33.0 67 0.0023 27.6 5.5 23 349-371 109-131 (151)
280 3s4r_A Vimentin; alpha-helix, 32.9 2E+02 0.0068 23.4 11.0 65 327-391 11-81 (93)
281 3q0x_A Centriole protein; cent 32.7 1.9E+02 0.0065 27.4 8.9 29 362-390 174-202 (228)
282 3ra3_A P1C; coiled coil domain 32.5 70 0.0024 21.2 4.1 14 357-370 5-18 (28)
283 2b9c_A Striated-muscle alpha t 32.3 2.6E+02 0.0089 24.5 14.0 21 321-341 34-54 (147)
284 1kd8_B GABH BLL, GCN4 acid bas 32.1 98 0.0034 21.9 5.1 23 364-386 6-28 (36)
285 1m1j_B Fibrinogen beta chain; 32.0 3.9E+02 0.013 27.8 11.8 9 349-357 104-112 (464)
286 3c9i_A Tail needle protein GP2 32.0 3.4E+02 0.012 25.9 11.0 49 347-395 86-134 (242)
287 1kd8_A GABH AIV, GCN4 acid bas 31.9 1.2E+02 0.0041 21.5 5.5 23 364-386 6-28 (36)
288 2l5g_A GPS2 protein, G protein 31.8 48 0.0017 23.7 3.5 21 365-385 14-34 (38)
289 4ath_A MITF, microphthalmia-as 31.6 97 0.0033 25.3 5.9 32 344-375 48-79 (83)
290 2e7s_A RAB guanine nucleotide 31.3 1.8E+02 0.0061 25.7 8.0 12 357-368 44-55 (135)
291 2j5u_A MREC protein; bacterial 31.1 24 0.00081 33.3 2.5 15 375-389 28-42 (255)
292 1l8d_A DNA double-strand break 31.1 1.7E+02 0.0059 23.4 7.4 13 346-358 32-44 (112)
293 2js5_A Uncharacterized protein 31.0 2E+02 0.0069 22.9 8.1 21 348-368 6-26 (71)
294 1f5n_A Interferon-induced guan 30.9 3.7E+02 0.013 28.4 11.7 27 340-366 507-533 (592)
295 3sja_C Golgi to ER traffic pro 30.2 69 0.0024 25.2 4.6 43 349-391 10-57 (65)
296 3ra3_A P1C; coiled coil domain 29.9 26 0.00088 23.2 1.7 16 378-393 5-20 (28)
297 2zvf_A Alanyl-tRNA synthetase; 29.8 49 0.0017 28.4 4.1 24 370-393 29-52 (171)
298 1gk7_A Vimentin; intermediate 29.7 73 0.0025 22.5 4.2 16 374-389 21-36 (39)
299 2efr_A General control protein 29.4 3.1E+02 0.011 24.5 14.7 44 346-389 78-121 (155)
300 4b4t_J 26S protease regulatory 29.4 57 0.002 33.0 5.1 26 346-371 26-51 (405)
301 3gp4_A Transcriptional regulat 28.3 2.7E+02 0.0094 23.6 8.6 28 346-373 89-116 (142)
302 2akf_A Coronin-1A; coiled coil 28.2 90 0.0031 21.4 4.2 26 371-396 4-29 (32)
303 1qvr_A CLPB protein; coiled co 28.1 5.8E+02 0.02 27.3 13.9 40 323-364 378-420 (854)
304 1avy_A Fibritin, gpwac M; bact 27.7 1.3E+02 0.0046 24.2 5.9 31 348-378 11-41 (74)
305 3ra3_B P2F; coiled coil domain 27.6 49 0.0017 21.9 2.8 15 379-393 6-20 (28)
306 2w6b_A RHO guanine nucleotide 27.4 2.1E+02 0.0072 22.0 7.7 30 376-408 20-49 (56)
307 3ljm_A Coil Ser L9C; de novo d 27.1 1E+02 0.0035 20.8 4.3 23 371-393 6-28 (31)
308 1j1d_B Troponin T, TNT; THIN f 26.8 2.9E+02 0.0098 23.3 10.0 19 357-375 47-65 (106)
309 3cl3_D NF-kappa-B essential mo 26.7 84 0.0029 27.8 5.0 18 346-363 31-48 (130)
310 3rrk_A V-type ATPase 116 kDa s 26.6 3.1E+02 0.011 26.0 9.5 29 346-374 227-255 (357)
311 1ybz_A Chorismate mutase; cons 26.5 2E+02 0.0068 23.2 7.0 35 354-388 19-53 (91)
312 2b5u_A Colicin E3; high resolu 26.5 6.1E+02 0.021 27.0 12.8 8 113-120 88-95 (551)
313 3rrk_A V-type ATPase 116 kDa s 26.4 1.3E+02 0.0046 28.5 6.9 10 174-183 27-36 (357)
314 2w6b_A RHO guanine nucleotide 26.3 2.2E+02 0.0076 21.8 7.1 25 349-373 14-38 (56)
315 4dyl_A Tyrosine-protein kinase 26.2 65 0.0022 31.9 4.8 10 327-336 304-313 (406)
316 3mud_A DNA repair protein XRCC 26.2 1.7E+02 0.0059 26.9 7.2 15 351-365 134-148 (175)
317 3lay_A Zinc resistance-associa 26.0 1.4E+02 0.0049 26.9 6.6 19 251-269 4-22 (175)
318 2j69_A Bacterial dynamin-like 25.6 4E+02 0.014 28.2 10.9 44 349-392 349-392 (695)
319 2b9c_A Striated-muscle alpha t 25.1 3.5E+02 0.012 23.7 11.8 48 347-394 75-122 (147)
320 3m48_A General control protein 24.9 1.1E+02 0.0039 21.2 4.3 22 364-385 5-26 (33)
321 4aj5_K Spindle and kinetochore 24.8 3.5E+02 0.012 23.6 8.8 34 358-391 49-82 (123)
322 3ghg_C Fibrinogen gamma chain; 24.7 2E+02 0.0069 29.4 8.1 22 368-389 107-128 (411)
323 2p22_A Suppressor protein STP2 24.5 2.3E+02 0.0078 25.8 7.6 19 317-335 23-41 (174)
324 1hwt_C Protein (heme activator 24.2 29 0.001 26.2 1.5 22 343-364 56-77 (81)
325 1ykh_B RNA polymerase II holoe 24.1 1.8E+02 0.006 25.1 6.6 10 377-386 96-105 (132)
326 1deq_A Fibrinogen (alpha chain 24.1 3.6E+02 0.012 27.6 9.7 12 378-389 118-129 (390)
327 1hs7_A Syntaxin VAM3; UP-and-D 23.8 2.2E+02 0.0075 23.6 6.8 21 349-369 37-58 (97)
328 3azd_A Short alpha-tropomyosin 23.7 26 0.00087 24.5 0.9 27 347-373 6-32 (37)
329 1yke_B RNA polymerase II holoe 23.2 1.8E+02 0.0061 25.7 6.6 8 378-385 97-104 (151)
330 1fmh_B General control protein 23.1 1.8E+02 0.0063 19.8 5.0 25 348-372 4-28 (33)
331 3a5t_A Transcription factor MA 23.0 7.8 0.00027 33.1 -2.2 87 300-394 7-93 (107)
332 2l5g_B Putative uncharacterize 23.0 1.6E+02 0.0054 21.5 5.0 33 348-380 5-37 (42)
333 2wvr_A Geminin; DNA replicatio 22.9 4.8E+02 0.017 24.6 10.3 23 345-367 122-144 (209)
334 3rkg_A Magnesium transporter M 22.8 4.7E+02 0.016 25.0 9.8 22 385-406 172-194 (261)
335 3c3g_A Alpha/beta peptide with 22.7 1.7E+02 0.0057 20.4 4.8 23 364-386 5-27 (33)
336 3vp9_A General transcriptional 22.5 2.8E+02 0.0097 23.0 7.2 31 348-378 39-69 (92)
337 3lss_A Seryl-tRNA synthetase; 22.0 5.1E+02 0.018 26.8 10.6 31 347-377 39-69 (484)
338 1r8d_A Transcription activator 22.0 2.6E+02 0.0088 22.3 6.9 32 300-332 40-71 (109)
339 4e17_B Catenin alpha-1; four h 21.9 36 0.0012 24.6 1.4 12 171-182 26-37 (40)
340 3csx_A Putative uncharacterize 21.6 2.4E+02 0.0081 23.0 6.4 21 373-393 57-77 (81)
341 1naf_A ADP-ribosylation factor 21.6 4.3E+02 0.015 23.5 12.7 78 313-393 20-111 (158)
342 3q8t_A Beclin-1; autophagy, AT 21.3 3.3E+02 0.011 22.1 13.6 30 344-373 24-53 (96)
343 3lay_A Zinc resistance-associa 21.3 2.6E+02 0.0088 25.3 7.3 12 376-387 116-127 (175)
344 3r6n_A Desmoplakin; spectrin r 21.3 6.6E+02 0.022 25.5 12.2 15 378-392 247-261 (450)
345 1cii_A Colicin IA; bacteriocin 21.2 7.7E+02 0.026 26.3 13.3 46 329-374 368-413 (602)
346 3sjb_C Golgi to ER traffic pro 21.2 1.2E+02 0.0039 25.4 4.6 40 352-391 30-74 (93)
347 1uo4_A General control protein 21.0 1.6E+02 0.0055 20.6 4.5 23 364-386 6-28 (34)
348 3coq_A Regulatory protein GAL4 21.0 87 0.003 23.8 3.6 21 345-365 45-65 (89)
349 3c3f_A Alpha/beta peptide with 20.9 1.9E+02 0.0065 20.2 4.8 23 364-386 6-28 (34)
350 3q4f_C DNA repair protein XRCC 20.6 89 0.003 29.1 4.1 24 344-367 160-183 (186)
351 3aon_A V-type sodium ATPase su 20.6 4.9E+02 0.017 23.8 9.7 34 364-397 36-69 (217)
352 2z5i_A TM, general control pro 20.6 2.6E+02 0.0089 20.6 6.4 37 348-384 8-44 (52)
353 4ad8_A DNA repair protein RECN 20.4 5.5E+02 0.019 25.6 10.3 82 318-399 158-246 (517)
354 3mxz_A Tubulin-specific chaper 20.2 4E+02 0.014 22.6 10.5 63 324-393 15-80 (116)
355 2xzr_A Immunoglobulin-binding 20.1 4.1E+02 0.014 22.7 11.0 10 328-337 35-44 (114)
356 3t98_B Nucleoporin NUP58/NUP45 20.0 3.2E+02 0.011 22.4 7.0 49 344-392 25-77 (93)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=4.1e-14 Score=107.70 Aligned_cols=52 Identities=31% Similarity=0.515 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
||++|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887543
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.27 E-value=2.4e-11 Score=94.16 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
+||.+|+.+||++|++||+||+.|+.+||.+|..|+.+|..|..++..|+.+...|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999998877766655543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.26 E-value=2.1e-11 Score=93.56 Aligned_cols=57 Identities=32% Similarity=0.485 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
||.+|+.+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999887776666543
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.12 E-value=1.5e-10 Score=89.17 Aligned_cols=56 Identities=32% Similarity=0.558 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
|+.+|..+||++|++||+||+.|+.+||.+|..|+.+|..|..++..|+.++..|.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999888776665543
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.97 E-value=9.2e-10 Score=85.80 Aligned_cols=53 Identities=34% Similarity=0.504 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
|+...|| .+||+||++||+||++|+.+||.+|..|+.+|..|..++..|..+.
T Consensus 8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344 5699999999999999999999999999999999998888776543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.92 E-value=2.8e-09 Score=85.03 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=58.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+++...||...||.+++..|+||.+||.+||.+|..|+.++..|..++..|..++..|..||.+||
T Consensus 5 ~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355567899999999999999999999999999999999999988888888888888888887764
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.89 E-value=3.5e-09 Score=82.26 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
|+.++..+||.+|+|+|+||+.++.+||.+++.|+.+|..|..++..|+.++..|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999999999999999888777666543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.37 E-value=2.2e-06 Score=69.60 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=51.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.|++-..|-.+|.++|++||++++....+++.+|..|+.||..|..+|..|+.++..|.
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666789999999999999999999999999999999999999988777666554
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.36 E-value=2.2e-06 Score=70.85 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=52.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
.|++-..|..+|.++|++||++++....+++.+|..|+.||..|..+|..|+.++..|..-
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666678999999999999999999999999999999999999998877666655443
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.26 E-value=2.3e-08 Score=85.62 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=54.4
Q ss_pred CHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 302 NDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 302 s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
+-.|++..+. .|..--...-|.+||.++||.+|+.+|.||+..+++||.++..|+.+...|..++. .|..|
T Consensus 17 ~v~elN~~L~--~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~-------~l~~E 87 (107)
T 3a5t_A 17 SVRELNQHLR--GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA-------SMKLE 87 (107)
T ss_dssp CHHHHHHTTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTS-------HHHHT
T ss_pred CHHHHHHHHh--CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3456666553 23322233568999999999999999999999999999988877766555555444 44444
Q ss_pred HHHHHHHHHHHH
Q 014471 382 IAEFLIVLLPFL 393 (424)
Q Consensus 382 N~ELK~RLqaLE 393 (424)
...||.++++|.
T Consensus 88 ~~~lk~k~e~L~ 99 (107)
T 3a5t_A 88 LDALRSKYEALQ 99 (107)
T ss_dssp TTSSSSCC----
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.20 E-value=7e-06 Score=68.45 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=55.3
Q ss_pred HHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 303 DAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 303 ~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
-.|++..+. .|..--...-|..||-++||-+|+.+|.||...+.+||..+..|+.+...|..+ +..+..|.
T Consensus 8 VreLN~~L~--gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e-------~~~~~~e~ 78 (90)
T 2wt7_B 8 VRELNRHLR--GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE-------VSRLARER 78 (90)
T ss_dssp HHHHHTTCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 455555553 222212235788899999999999999999999999998888776665555554 44455555
Q ss_pred HHHHHHHHHH
Q 014471 383 AEFLIVLLPF 392 (424)
Q Consensus 383 ~ELK~RLqaL 392 (424)
..+|.++++|
T Consensus 79 d~~k~k~~~L 88 (90)
T 2wt7_B 79 DAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5666665543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.69 E-value=6.4e-05 Score=54.88 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
|+|+.+||.+++.|+..|.+|..++..||++|.+|..
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6899999999999999999999999999988887754
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.35 E-value=0.0012 Score=55.24 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQK 353 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~K 353 (424)
.++-.|.+..+....|.+--+...|.+||-.+||.+|++.|+||...+++|+..
T Consensus 38 ~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 38 EMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 345567777777777776666778999999999999999999999999988764
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.29 E-value=0.046 Score=44.86 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
.-++.||.||+.+-...+-|.-++..|+.+|..|..++.+++.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888888887777777777787778777777777444
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.94 E-value=0.093 Score=41.07 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..=|.||++|..-|..|+.++..+|+..+.|..||..|+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 345889999999999999999999999999999999887
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.89 E-value=0.3 Score=42.97 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.+.++.++.|+.+++.+..|...|+.++..++.++..+..++.+|+.++..++.+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557889999999999999999999999999999999999998888877654
No 17
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=93.67 E-value=0.15 Score=41.04 Aligned_cols=51 Identities=20% Similarity=0.075 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
..|.+||.|+..++.-..+|...|..-+++...|..+...|..|+..++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999999999999887753
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.37 E-value=2 Score=38.85 Aligned_cols=56 Identities=7% Similarity=0.022 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFL 406 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~eal 406 (424)
+-..-++.|+.|...|..++..++.....|..||++|-.|. |.+..+=.++++++.
T Consensus 93 eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW--M~rk~qEAe~MN~an 148 (152)
T 3a7p_A 93 LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW--LKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 33455788888999999999999999999999999998776 222233335555543
No 19
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=92.27 E-value=0.2 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVT 369 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~ 369 (424)
-++||+.+++.|+.||..|+.++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999985
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.25 E-value=4 Score=37.37 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIV----HLFVFL 406 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd----~L~eal 406 (424)
+-=+.=++.|.+-.+.+.||+.+|..|+.|...++..+..+ ..+|+.|..+|..+|...--.+ .=-+++
T Consensus 76 a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344455666677777778888877777777766665554 4455555555555555433322 112466
Q ss_pred HHHHHHHHH
Q 014471 407 TLFFFREIL 415 (424)
Q Consensus 407 ta~f~rEI~ 415 (424)
+.-.++|+.
T Consensus 149 Q~~~eqE~~ 157 (168)
T 3o0z_A 149 QQRLEQEVN 157 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.24 E-value=2.7 Score=47.42 Aligned_cols=53 Identities=15% Similarity=0.037 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTI----LQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~----Lqren~~L~~EN~ELK~RLqaLE 393 (424)
....+-+++|+.+++.+..|...|.+++.. |+.....|..||..|++++..|+
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444332 33444456666666666666665
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.77 E-value=2.3 Score=42.93 Aligned_cols=37 Identities=11% Similarity=-0.094 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
+.++.++..+.+++...+++...+..|..+|+.+++.
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3333333333333433334444444444444444433
No 23
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.72 E-value=0.63 Score=34.26 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+..||..|..|+.||.+|+.+.-.-..-..-|+.|...|+.++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 35678888888888888887765444444455555555555544
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.40 E-value=4.2 Score=41.04 Aligned_cols=47 Identities=4% Similarity=-0.050 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.|++.++.++.+...+..++..++++...++.+.++|+.++..||+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 45555555555555556556666666655555565656666666654
No 25
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=90.97 E-value=1.2 Score=33.84 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.+.|-++|..|..||+.|++++..-..+...|+.|-..+|.-+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 3678899999999999999999888888888888877777554
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.03 E-value=2.4 Score=37.21 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.=.+.+++++.++..|..+...+..++..+.+++..|..++++|..++..+|.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566677777777777777777777777777777777777777766653
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.91 E-value=1.6 Score=35.75 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
|.-|.-+|..|+.+|.+|..++..++.....|..||..|+... ..|.+.|...+..
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~------~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ------NGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 3445555555666666666666665555566777777776555 4455555544443
No 28
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=89.84 E-value=1.6 Score=32.35 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+||.+|..|+.-...|..+++.|..++.. -...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 57777777777666666666666555443 345688999888865
No 29
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=89.65 E-value=1.2 Score=36.58 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAIL 398 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqL 398 (424)
..||..|...++.+..+ +.+...|...|..|..|+|.||.||++
T Consensus 38 vdYI~~Lq~e~~r~~e~-----------e~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDL-----------ENRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 67887776665544433 344556888999999999999999865
No 30
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=89.13 E-value=2.2 Score=39.81 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+.++.=+.-|+.|+.||..|..|+...+.++..|..+...|+.++
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455566888888888888888876666666666655555554
No 31
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.96 E-value=0.5 Score=33.14 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.+..||.||..|-.+|..|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467899999999888888888777665
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.94 E-value=5.4 Score=31.96 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.++..|++.++.+|..|..+|..|+.+...-..+-..++..|+.+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888999999888888888877766666666666544
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.82 E-value=3.7 Score=34.98 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSA-------QVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~-------Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
-+||.++..|+.||..|.. ++..|+.+...|..||..|+..-
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887776 55555555666666666555444
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=88.80 E-value=1.3 Score=32.32 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
|..|+.....|..++..|++....|..||.-|++-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555555555555555555555555443
No 35
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.73 E-value=9.2 Score=31.63 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
-++.-....+.+|.+++.++.++..+..+|..|++.+..|..+...+..+|.
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566677777777777777777777777777666666666655554
No 36
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.65 E-value=0.46 Score=33.14 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+..||.||..|-.+|+.|..++.-|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56899999999999999988887765
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.30 E-value=0.83 Score=38.69 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
-+..|..+|..|+.||..|..++..|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655554
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.86 E-value=3.2 Score=33.76 Aligned_cols=45 Identities=24% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+++..|++.++.+|..|..+|..|+.+...-..+-..++..|+.+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888887777766666666666555543
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.66 E-value=4.3 Score=45.76 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
++.+|..|+.|..+|..++..+.++...|+.++.+++
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444454444444444444444444444
No 40
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=87.18 E-value=0.27 Score=42.08 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVLLPFLIRAIL 398 (424)
Q Consensus 374 en~~L~~EN~ELK~RLqaLEQqaqL 398 (424)
+...|..+|..|..||+.||.|+++
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999998865
No 41
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.06 E-value=1 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.+..||.||..|-.+++.|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999888888877654
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.94 E-value=0.79 Score=32.12 Aligned_cols=28 Identities=7% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.+..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999888888876653
No 43
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=86.51 E-value=2.3 Score=34.40 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
++||.||..|+.-...|..+++.|..++.. -...||+||..||.+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFL 48 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 467788887777766666666666555543 3456899998888763
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.49 E-value=18 Score=33.71 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~ 366 (424)
...+..+.+++.++..++.+...+..
T Consensus 49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ 74 (256)
T 3na7_A 49 LNLEEEKLALKLQVSKNEQTLQDTNA 74 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.46 E-value=7.5 Score=31.94 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIA-----ELILPIAEFLIVLLPFL 393 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~-----~L~~EN~ELK~RLqaLE 393 (424)
||..|+.+|..|..++..++.... ....+..+|+.+|..+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666655554321 23445555555554443
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.31 E-value=11 Score=32.42 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
|+..+..|..++..|...|-.|+..|+.|....
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 333444444444444444444444444333333
No 47
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.02 E-value=0.89 Score=32.24 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
.+..||.||..|..+++.|..++..|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35689999999999998888888776643
No 48
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.83 E-value=0.92 Score=35.95 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
..||..|+.+++.|+.|...|..++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665554444444433
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.64 E-value=3.8 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+|+.|+.|+.+|..+|.....+...|..+|..|..||.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 35555555555555555555556666666666665553
No 50
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.60 E-value=1.4 Score=30.79 Aligned_cols=26 Identities=8% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+..||.||..|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56899999999999888888877665
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=85.06 E-value=8.8 Score=39.92 Aligned_cols=19 Identities=16% Similarity=-0.120 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 376 AELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 376 ~~L~~EN~ELK~RLqaLEQ 394 (424)
..|..|-++|+.+|..+++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~ 137 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYP 137 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555666666655553
No 52
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=84.51 E-value=5.1 Score=33.01 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 358 QTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 358 q~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
-.||.+|..++..++.+...|..||.+|+.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999999998864
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.49 E-value=1.1 Score=31.38 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.+..||.||..|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 467899999999999988888877665
No 54
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.32 E-value=2.3 Score=34.65 Aligned_cols=51 Identities=16% Similarity=-0.031 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014471 356 TLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP-FLIRAILIVHLFVFL 406 (424)
Q Consensus 356 ~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa-LEQqaqLrd~L~eal 406 (424)
.|+.++.++..++..++.+|..|......|+.+|+. -.++.+++..|..++
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666655555555555543 233444444444433
No 55
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=84.31 E-value=2 Score=35.75 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..|..++..|+.+...|..||.+++..+..+.+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666655544433
No 56
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.08 E-value=2.9 Score=31.45 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
++..|+.++..|.+++..|.........|...|+.+|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333333333333444444444
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.06 E-value=3 Score=31.40 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..|+.+...|..+|.+|+.+++.|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554443
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.94 E-value=16 Score=33.97 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
++..|+.++..|...+..|+.+|-.|||.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666677777777777777666653
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.81 E-value=3.7 Score=43.57 Aligned_cols=53 Identities=9% Similarity=0.244 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 337 qRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
......+.+|-+|||++++.|+.+...-..+|..||..+..+..+.+.|..-|
T Consensus 102 ~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 102 NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888899999999998887766888888887777777666665444
No 60
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=83.77 E-value=1.8 Score=30.14 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
+..||.||..|-.++..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999888888876653
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.65 E-value=1.3 Score=31.07 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.+..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999999888888877653
No 62
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=83.53 E-value=2 Score=34.42 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
-..||..|+.+.+.|+.|...|..++..|+.+
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888887777777666665555444433
No 63
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.50 E-value=2.1 Score=32.19 Aligned_cols=28 Identities=7% Similarity=0.078 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
..|+.++..|+.++..|..++.+|+.+|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555556666666555
No 64
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=83.05 E-value=1.4 Score=30.90 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.+..||.||..|-.+|..|..++..|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356899999999988888888877664
No 65
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=82.91 E-value=0.089 Score=44.01 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.0
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRY 346 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~Y 346 (424)
.++-+|.+..+....|.+--+..-+.+||-.+||.+||+.|+||...
T Consensus 42 ~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 42 NLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34556777777777776666667889999999999999999999753
No 66
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=82.79 E-value=18 Score=33.66 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
+|+.++..|+.+|..|...+..|..++..+..+..+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~ 171 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEA 171 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443333
No 67
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=82.55 E-value=1.9 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
.||.+|...++.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5899999999999999999999999986
No 68
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.55 E-value=21 Score=45.03 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 360 EATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 360 EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
+..+|.++++.|+.++..+..|..+|+.+++..++.
T Consensus 2036 ~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555554444433
No 69
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.46 E-value=19 Score=29.51 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
-++.-....+.||.+++.+..++..+..++..|++.+..|..+...+..+|..
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666777777777777777777777777776666666666555543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.17 E-value=22 Score=35.22 Aligned_cols=40 Identities=10% Similarity=-0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+.+|.|-..+.+.....+++...|..||..|+..++.+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3334444444455555556666666666666666665544
No 71
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=82.06 E-value=5.6 Score=29.79 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
|.++..|..-|..|..+++.|+..+..++.|+..|+.=
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 67788888888889999999999998888888777643
No 72
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=82.02 E-value=2.6 Score=40.10 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 316 AEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 316 aElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
..|-.-++||.+|+|+-=.-=.+-|+-|..-++++ ..+...+..++..++.++..++.+..+|+.++
T Consensus 112 ~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~-------~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 112 ADILCPKAKRTSRFLSGIINFIHFREACRETYMEF-------LWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred hHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556789999999776555555555444433332 33333444444444444444444444444443
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.17 E-value=24 Score=30.43 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 014471 333 RQSAARSKERKMRYISELEQKVQTLQT---EATTLSAQVTILQVSIAE-------LILPIAEFLIVLLPF 392 (424)
Q Consensus 333 RESAqRSReRKK~YieELE~KVq~Lq~---EN~~Ls~Ql~~Lqren~~-------L~~EN~ELK~RLqaL 392 (424)
=.+|...=..|+.-|++|..++..+.. +..-|.+|+.....++.. +..|+.+|..+|..|
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 345555555677777777777777666 455566676666655543 444444444444433
No 74
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=80.07 E-value=34 Score=31.06 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+-+-++..++.|+..+.-=++.+..+..|..+-..-.....+...++...++++.. -|..|+..|..+.+
T Consensus 142 ~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~---ln~~L~~eLp~l~~ 211 (251)
T 2fic_A 142 QFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEE---MNVDLQEELPSLWN 211 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34445555555555544444444444444322111111222233444444444443 36777777766643
No 75
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=80.06 E-value=2.3 Score=41.06 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+.+|+.++..|+..|..|.+.+..++++...|..|++.|+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777777777666666666666665554
No 76
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.87 E-value=7.6 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
..|.+||.+|..|..||..|..+.....
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777777777776665544
No 77
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=79.82 E-value=12 Score=39.09 Aligned_cols=43 Identities=5% Similarity=0.021 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQV---SIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqr---en~~L~~EN~ELK~RLqaLEQq 395 (424)
+++.|+.+-..++.+|..+.+ +...|..|-++|+.+|..++++
T Consensus 48 ~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 48 DLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444332 1345666777777777666654
No 78
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=79.44 E-value=4.9 Score=31.04 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLI 387 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~ 387 (424)
|+++..|..-|-+|-.+++.|+.++...+.|+..|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888888888888776653
No 79
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.31 E-value=4.8 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEAT 362 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~ 362 (424)
..||..|+.+.+.|+.+..
T Consensus 51 ~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666665554433
No 80
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.31 E-value=18 Score=32.64 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.|+.++..|+.+...-...+..|+-++..|..+++.+..++..++++
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455556666666666666666666666553
No 81
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=79.29 E-value=3.2 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
+..||..|.+.+.||-+|..++..|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567778888777777777777766544
No 82
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=79.15 E-value=12 Score=35.46 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.||..|..+|..|+.++..|..||.+|+.-+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999998887544
No 83
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=78.93 E-value=30 Score=34.89 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQV--------SIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr--------en~~L~~EN~ELK~RLqaLE 393 (424)
++..+++.+++|-... . ...+.+|..+-..++.+...|+++...+.+ +...|..+-++|+.+|..++
T Consensus 10 ~~~~~~~~~~~r~~~~---~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 10 EPEVFHRAIREKGVAL---D--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp CHHHHHHHHHHHTCCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4455555555553210 0 344455555555555555555555444443 34566677777777776666
Q ss_pred HH
Q 014471 394 IR 395 (424)
Q Consensus 394 Qq 395 (424)
++
T Consensus 85 ~~ 86 (421)
T 1ses_A 85 EA 86 (421)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 84
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.85 E-value=7.5 Score=33.58 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 339 SReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
-+..-+.|+.+|+.+|..|+.|...-+.+......++..|..|+..|
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667789999999999998887776666555555555555555544
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.84 E-value=5.7 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
..|+.|...|.+++..|+++...+..++++|++++... .++|..|+..++++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE---ETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 33444444444555555555555666666666555443 34455665555543
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=78.82 E-value=14 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+.+|-.++..|+.|...|+-+++.++.+...|....+++-..|
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777777777776666666666665555544333
No 87
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.77 E-value=16 Score=30.82 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..||.++.....|...|..++..-+........++..|.
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333333333
No 88
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.64 E-value=23 Score=28.00 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+..++.++.++...+..+..+...+..|++.+..|..+...+..+|
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 89
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.47 E-value=9.7 Score=29.10 Aligned_cols=29 Identities=10% Similarity=-0.139 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
++..|+.+...|..+|.+|+.++..|+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666543
No 90
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.29 E-value=27 Score=28.73 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+..|+..++.|..+=..|..+|..|+++...|..+...+......+.+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 356677777777777777777777777777777777777777766654
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.27 E-value=2.5 Score=32.08 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..|+.+...|..+|.+|+.++..|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554443
No 92
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.23 E-value=31 Score=35.22 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQV---SIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqr---en~~L~~EN~ELK~RLqaLEQq 395 (424)
++..|+.+...++.+|..+.. +...|..+-++|+.+|..++++
T Consensus 46 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 46 EINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443321 1235566666666666666543
No 93
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.19 E-value=20 Score=27.17 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+..|+.+...|..+|.+|+.+|..|.+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777766665554
No 94
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=77.96 E-value=31 Score=31.59 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 334 QSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 334 ESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
++=.--|.||.. .||-..++.++..+.+|..++..|+.....|..++..|...|..
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666665 67777778888888888888888888888888777777766654
No 95
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.88 E-value=19 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
.+...|++++..+|.--.++++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHH
Confidence 44455555555555555444444
No 96
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.08 E-value=24 Score=30.06 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 014471 382 IAEFLIV 388 (424)
Q Consensus 382 N~ELK~R 388 (424)
..+|..|
T Consensus 85 l~el~~r 91 (129)
T 2fxo_A 85 VKEMNKR 91 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 97
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=76.22 E-value=21 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
|-..+.+||.++.+++.-...+...+..+......+..++..=+..+.++++
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~ 55 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQ 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456778888888877766655555555444444443333333333444443
No 98
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=75.74 E-value=11 Score=30.53 Aligned_cols=28 Identities=7% Similarity=-0.110 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 367 QVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 367 Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
-...|.-+...|.-||+-|..||+.|.+
T Consensus 47 d~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3445666777888999999999987765
No 99
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.72 E-value=4 Score=32.53 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLq 390 (424)
.|+.+...|..|+.+|+.+++
T Consensus 54 ~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 54 FLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666655554
No 100
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=75.72 E-value=15 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
.||..|..+|..|+.++..|..+|.+|+.-
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999888743
No 101
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=75.69 E-value=6 Score=32.28 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.||..|..+|..++.++..|..||..|+.=+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999887544
No 102
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=75.66 E-value=15 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERKMRYISELEQKVQTLQTEATTLS 365 (424)
Q Consensus 330 LkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls 365 (424)
-+||.+++++|.|=+..++-...-...-..||..|+
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 689999999999887766555444444444444443
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=75.63 E-value=33 Score=28.30 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.-+.++|.+...++.|...|..++..|+.+...+.....+.+..|..-++.
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~ 80 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555565666666555555555555555555444433
No 104
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=75.33 E-value=23 Score=34.18 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.-|.|+..|++.|+.--..+..+|+.|+++-..|+.+...++.|+..+++.
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999988999999999999999999999999998777653
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.98 E-value=5.7 Score=29.82 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
.|..|+.||.+|+.++..|+.++..|..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=74.69 E-value=2.8 Score=40.50 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|.+++.|+.++..|.+++..|......+..|...||.+|+.|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777777777777777777777777777777776665553
No 107
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=74.57 E-value=24 Score=32.94 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
|-.-+|.++..-....+.|..++..|.++......|++.|+.+|++++++.
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444555666655666666777777777777777777777777777776544
No 108
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=74.31 E-value=32 Score=32.01 Aligned_cols=39 Identities=8% Similarity=0.010 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
-++.+..|..++..|+.+...|.+|+..+......++.+
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777776665554433
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.27 E-value=13 Score=37.91 Aligned_cols=66 Identities=9% Similarity=0.237 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSK-ERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 324 KR~RRiLkNRESAqRSR-eRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+-+..+|+.|+.-..-- .+=.+|.++||+++..|+.....-...|..||.....+..+.+.|...|
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555443333 3446889999999999998776655588888888777777777776555
No 110
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=73.25 E-value=18 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIA 376 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~ 376 (424)
|.+|..+|+.|..+...|+.++..|+.+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444333
No 111
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=73.17 E-value=6 Score=27.75 Aligned_cols=27 Identities=4% Similarity=0.177 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
+..||.||..|-.++..|..++..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568899999888888888887776653
No 112
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=73.00 E-value=5 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.013 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
++.++...|.+...|..+|..|..++..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555555554433
No 113
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.84 E-value=11 Score=38.21 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 355 QTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 355 q~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
..|+.|..+|.+++..|++++..+..|+.+++++|... ...|..|+..++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~rr~l~n~~~~ 56 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS---NMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45566666666667777777777777777777665442 3444555554444
No 114
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.78 E-value=18 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 366 AQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 366 ~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.++..|+..+..|..||..|+.++..|.
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554443
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.72 E-value=34 Score=33.85 Aligned_cols=15 Identities=27% Similarity=-0.029 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEF 385 (424)
Q Consensus 371 Lqren~~L~~EN~EL 385 (424)
+.++++.+..+..++
T Consensus 447 ~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 447 LAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhh
Confidence 333333333333333
No 116
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.25 E-value=27 Score=29.65 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
|.+|-+.|+.|+.|...|+.+...|+...
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l 66 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAI 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555555555555555544444444433
No 117
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=71.82 E-value=17 Score=34.48 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=44.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
.++..+|+-|+.|..+-++ .+..|+.+++..+.|+..+.++++...++...+...-..+
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566778888888776553 3568999999999999999999988887776666554444
No 118
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.25 E-value=35 Score=29.01 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
|.+|-+.|+.|+.|...|+.+...|+
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLE 65 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444433333333
No 119
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.99 E-value=26 Score=30.60 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVLL 390 (424)
Q Consensus 374 en~~L~~EN~ELK~RLq 390 (424)
+...|..|+..|++.|+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444544444
No 120
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=69.98 E-value=54 Score=28.46 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
.+|+.+++.|..+|..|..++..++.+...|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776666666555444
No 121
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.87 E-value=4.5 Score=32.89 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..|+.+|..|..++..|+.||.-||
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666555
No 122
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.47 E-value=24 Score=30.06 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
.|..|+.+++.+...+..|..++..++...
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677777777777777777666655544
No 123
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=69.29 E-value=54 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=20.3
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANR 333 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNR 333 (424)
.|+..++..+.-=..|.++- .--+.+|+++...
T Consensus 40 ~Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 40 KFGAEDLRWILFTRQMRRAG-LSIEALIDYLALF 72 (142)
T ss_dssp CBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 46777777666666665543 3456667766643
No 124
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.26 E-value=23 Score=28.03 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
.||.+|+.+++.|+.|+..|..++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444433
No 125
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.11 E-value=52 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
|..|+.+++.|+..+..|..++..++...
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555443
No 126
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.95 E-value=32 Score=29.61 Aligned_cols=23 Identities=13% Similarity=0.110 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTI 370 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~ 370 (424)
...|..+..-+.+...|++++..
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 127
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.91 E-value=44 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+||.+...|..+...|..|++..+..+..|.....+|-..|..|+
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888877778888888777777777776554
No 128
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.83 E-value=19 Score=28.78 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTIL---Q---VSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~L---q---ren~~L~~EN~ELK~RLqaLE 393 (424)
-++.||.++..|+.+...|..++..- + .....|..+..++...|..+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998888641 1 344555666666666665544
No 129
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=68.41 E-value=4.3 Score=30.06 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
..|+++||.+|..|+.+...|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999888877776654
No 130
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.19 E-value=29 Score=25.43 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTI 370 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~ 370 (424)
...++.+++.++..+..+-..+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 37 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINE 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 131
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.81 E-value=50 Score=27.10 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 332 NRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 332 NRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
|=+||-.+-.|-|+-|.+ ++......|..+..++...+.+|..|..|...|+.++..
T Consensus 14 eLQSALeaEIqAKQ~i~E---ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSR---EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776666654332 333444555556666666666666666666666655544
No 132
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.59 E-value=59 Score=27.85 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
++.||.+...|..+|..|+.+|-.|||
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 133
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=67.42 E-value=48 Score=26.83 Aligned_cols=47 Identities=23% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
..||+.+.....-...|..++..|+.+...|.-++.++.-.|..|.+
T Consensus 9 ~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 9 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444333333334556666666666666666666666666655543
No 134
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.78 E-value=1.1e+02 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
..+.+|..+...++.+..+|+++...+.++...+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555554443
No 135
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=66.72 E-value=23 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPI 382 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN 382 (424)
+|..++..|...|..|..-+.....+...|..|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 136
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.45 E-value=4.6 Score=32.85 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~ 366 (424)
|+.|.||+.++..|+.||+-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888877777764
No 137
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.45 E-value=26 Score=29.89 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=8.6
Q ss_pred hhcChHHHHHHHHH
Q 014471 319 ALSDPKRAKRILAN 332 (424)
Q Consensus 319 Al~DpKR~RRiLkN 332 (424)
+.+++|-.|-|+.|
T Consensus 5 ~EvEEKyrKAMVsn 18 (103)
T 4h22_A 5 AEVEEKYKKAMVSN 18 (103)
T ss_dssp ---CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44677888888776
No 138
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.18 E-value=17 Score=29.33 Aligned_cols=23 Identities=13% Similarity=-0.138 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.++.+...|..+|..|+.+|+.|
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555556666665544
No 139
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.73 E-value=46 Score=29.94 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+..|+.++.....|...|..++..-+........++..+...|+.|
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666776666666555544444455555555444433
No 140
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.68 E-value=24 Score=30.04 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTE--ATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~E--N~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..|++.|..|-+. +.+|+.+|..++..+..|..+-.+.-.+|..+
T Consensus 30 vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444332 34455555555555555555555544444443
No 141
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.21 E-value=23 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+||.++..|+....-+..-|..|.........+...|+.++..|
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777666666655555555555555555555555555443
No 142
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.87 E-value=65 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
+++|..+..++.|+.....++..+.+.+..|..+...|
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333333
No 143
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.74 E-value=29 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..|+.+...|..+|.+|+.++..|.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666654443
No 144
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.56 E-value=50 Score=25.97 Aligned_cols=48 Identities=10% Similarity=-0.076 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
..|+............+..++.........+..+...|+.+++.+|.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666777777777777777777777754
No 145
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=64.20 E-value=72 Score=27.67 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 014471 351 EQKVQTLQ 358 (424)
Q Consensus 351 E~KVq~Lq 358 (424)
+.+.+.|+
T Consensus 63 e~~n~~L~ 70 (155)
T 2oto_A 63 EDQRKDLE 70 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 146
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.17 E-value=6.6 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
|++++...+..|..||..|+.++..|+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444433
No 147
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=64.03 E-value=15 Score=34.65 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
=+.=.|+++..|+.+|..|+.+++.|.. ...+|..+-.++..+..
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVL 110 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3456677788888888888877766542 34455555555555443
No 148
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=63.61 E-value=91 Score=28.62 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 304 AELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISEL 350 (424)
Q Consensus 304 ~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieEL 350 (424)
++..|++...+.+ -..+-.+++++..-|.-..+-++-|..|+-++
T Consensus 19 e~aek~~~~k~~~--le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 19 DRAEKVVKEKRRL--LELEQEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655543 12345577788888888888888887665543
No 149
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.58 E-value=28 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVT 369 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~ 369 (424)
...|.+||.+++....+...|..++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555544443
No 150
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.16 E-value=37 Score=36.12 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014471 328 RILANRQSAARSKERKMR 345 (424)
Q Consensus 328 RiLkNRESAqRSReRKK~ 345 (424)
.+.+||..+-.--.-+++
T Consensus 75 dlsKnsKdseqy~k~~~E 92 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIME 92 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHH
Confidence 344555555444333333
No 151
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=63.00 E-value=62 Score=26.52 Aligned_cols=50 Identities=14% Similarity=0.051 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVH 401 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~ 401 (424)
.+...|-.|...|+-+|+.|+.+...-+...+.-|..|..|.++--.+++
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 34445555566666666666665555555555556666666655555544
No 152
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.03 E-value=72 Score=26.92 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHh
Q 014471 404 VFLTLFFFREILR 416 (424)
Q Consensus 404 ealta~f~rEI~~ 416 (424)
.+++...+.||-.
T Consensus 100 ~FLKk~heeEl~e 112 (119)
T 3ol1_A 100 AFLKKLHEEEIQE 112 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667777777754
No 153
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=61.98 E-value=43 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 361 ATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 361 N~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|.-|+.++..|.+++-.|+...+.|.
T Consensus 5 naylrkkiarlkkdnlqlerdeqnle 30 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLE 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 34455555555555544444444443
No 154
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.24 E-value=12 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+..|+.+...|..||..|+.++..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666777777776665554
No 155
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.21 E-value=19 Score=28.22 Aligned_cols=20 Identities=20% Similarity=-0.032 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLq 390 (424)
|+.+...|..+|..|+.+|+
T Consensus 59 l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 59 HQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 156
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.04 E-value=46 Score=28.25 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
..|..|..|+.++.+|..++...+
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544433
No 157
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=61.00 E-value=43 Score=25.21 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
.|+..|..+..+|..++..|+.+...|..+.+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777666666555444
No 158
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=60.80 E-value=46 Score=24.32 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..|+..+..+..+...+..++..+......+....+..+..|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655555566656555555555555555555555444
No 159
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=60.59 E-value=29 Score=34.99 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSI----------AELILPIAEFLIVLLP 391 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren----------~~L~~EN~ELK~RLqa 391 (424)
++..+++.+++|-... .--...+.+|..+...++.+..+|+++...+.++. ..|..+-++|+.+|..
T Consensus 10 ~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 86 (425)
T 2dq3_A 10 KPDYVKERLATRDKEL---VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDR 86 (425)
T ss_dssp CHHHHHHHHTTTCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHH
Confidence 4555566666653210 00023344444444555555544444444444433 3455666677777766
Q ss_pred HHHH
Q 014471 392 FLIR 395 (424)
Q Consensus 392 LEQq 395 (424)
++++
T Consensus 87 ~~~~ 90 (425)
T 2dq3_A 87 LEEE 90 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 160
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=60.37 E-value=78 Score=26.80 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHH----H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 333 RQSAARSKERKMRYISE----L--EQ-KVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 333 RESAqRSReRKK~YieE----L--E~-KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
|-..+..++.|++||.| | .. -...|+.-+.+|..+|..|+.+.-.|+..
T Consensus 16 ~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k 71 (107)
T 1ytz_T 16 RGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444456667778775 1 11 12345555555666666655554444433
No 161
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.09 E-value=3.6 Score=38.93 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 014471 376 AELILPIAEFLI 387 (424)
Q Consensus 376 ~~L~~EN~ELK~ 387 (424)
..|..||.+|+.
T Consensus 46 ~~l~~En~rLr~ 57 (255)
T 2j5u_A 46 ADLKKENKDLKE 57 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344445555543
No 162
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=58.41 E-value=74 Score=25.93 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.++|.+...+..+...|..++..|+.+...+......++..|
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 163
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.92 E-value=35 Score=27.37 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLE 393 (424)
++.....|..||..|+.+|+.|+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 164
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=57.54 E-value=22 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
-|.|+..|++.|..--..+..+++.++++-..|+.+..+++.||..
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 165
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.39 E-value=28 Score=29.92 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+|..++..|+.++..|..|+.+|+.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 166
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=56.69 E-value=5.8 Score=29.68 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLS 365 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls 365 (424)
..|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999998887655543
No 167
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.57 E-value=90 Score=32.80 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKE-RKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 324 KR~RRiLkNRESAqRSRe-RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+-+..+|+.|+.-..--+ +=.+|.++||.++..|+.....--..|..||.....+..+.+.|.
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555554433333 445788889988888876655433666666666655555544443
No 168
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=56.43 E-value=29 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVT 369 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~ 369 (424)
||..|...+.+...|..++.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHH
Confidence 44444444433333333333
No 169
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.31 E-value=39 Score=27.22 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 338 RSKERKMRYISELEQKVQTL 357 (424)
Q Consensus 338 RSReRKK~YieELE~KVq~L 357 (424)
..+..+..-+.+++.-...|
T Consensus 27 ~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 27 QQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 170
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.84 E-value=85 Score=25.82 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLE 393 (424)
-+.++..|..+...++.+|..|+
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444555554443
No 171
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.81 E-value=19 Score=29.24 Aligned_cols=45 Identities=20% Similarity=0.085 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVT-------ILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~-------~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+-+.|..|-.||++|.+--. .|..+.+.|..|+..|+.++.++.|
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677777777655432 3445666777777777777766654
No 172
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.80 E-value=22 Score=35.22 Aligned_cols=41 Identities=17% Similarity=0.004 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 353 KVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 353 KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+++.|..|..+|...|.....+...|......++.+|+.|+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~ 46 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQ 46 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 173
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.64 E-value=77 Score=25.28 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.++|.+-+.|+.....|..++..-+.+-..+.
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~ 41 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333
No 174
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=55.56 E-value=2.1e+02 Score=30.35 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
++.-+..+|.-|+.++.....+..+....+.....+..|...+
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333333333333333
No 175
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=55.55 E-value=78 Score=25.29 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
|...|..|..|+..|..++..++++...+..|-.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~ 35 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEI 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888888888888776664433
No 176
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=55.37 E-value=54 Score=27.97 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 378 LILPIAEFLIVLLPFL 393 (424)
Q Consensus 378 L~~EN~ELK~RLqaLE 393 (424)
|..+..+|+..++.||
T Consensus 23 L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 177
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.87 E-value=67 Score=26.26 Aligned_cols=26 Identities=12% Similarity=-0.063 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
.++.+...|..||..|+.+|+.|+.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 178
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.73 E-value=2e+02 Score=30.32 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.5
Q ss_pred HHHHHHh
Q 014471 410 FFREILR 416 (424)
Q Consensus 410 f~rEI~~ 416 (424)
...||.+
T Consensus 572 ~~~ei~~ 578 (592)
T 1f5n_A 572 MKNEIQD 578 (592)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455554
No 179
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.69 E-value=58 Score=26.69 Aligned_cols=6 Identities=50% Similarity=0.772 Sum_probs=2.3
Q ss_pred HHHHHH
Q 014471 349 ELEQKV 354 (424)
Q Consensus 349 ELE~KV 354 (424)
-|+..|
T Consensus 18 ALeaEI 23 (81)
T 1wt6_A 18 ALEEEV 23 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344333
No 180
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.55 E-value=20 Score=36.32 Aligned_cols=29 Identities=10% Similarity=-0.056 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 361 ATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 361 N~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
+..|..++..|+++...|..|+..|+.++
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~ 72 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQ 72 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 181
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=54.00 E-value=72 Score=24.42 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 014471 380 LPIAEFLIVLLPFL 393 (424)
Q Consensus 380 ~EN~ELK~RLqaLE 393 (424)
.|..+|+..|+.|+
T Consensus 56 ~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 56 QESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 182
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.98 E-value=39 Score=34.13 Aligned_cols=31 Identities=23% Similarity=0.132 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.+|..++..|+++...|..++++++.+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 183
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=53.67 E-value=26 Score=30.13 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 369 TILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 369 ~~Lqren~~L~~EN~ELK~RLq 390 (424)
+.|..+.+.|..||+.||.+|.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566667778888887776
No 184
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.34 E-value=27 Score=23.87 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.|.++...|..|...||.++.++.|
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444445555555544443
No 185
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.05 E-value=11 Score=29.54 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFL 386 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK 386 (424)
|..|+.++..|..++.+|+
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 186
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.95 E-value=71 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 350 LEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 350 LE~KVq~Lq~EN~~Ls~Ql 368 (424)
|+.+++.|+.+...|..++
T Consensus 6 L~~~i~~L~~q~~~L~~ei 24 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSL 24 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333
No 187
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=52.51 E-value=48 Score=26.33 Aligned_cols=25 Identities=12% Similarity=-0.129 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 366 AQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 366 ~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
.+...++.+...|..|+.+|+.+|+
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444455555555555553
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=51.74 E-value=65 Score=33.46 Aligned_cols=13 Identities=0% Similarity=-0.181 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 014471 382 IAEFLIVLLPFLI 394 (424)
Q Consensus 382 N~ELK~RLqaLEQ 394 (424)
-++|+.+|..+++
T Consensus 113 ~~~l~~~i~~le~ 125 (484)
T 3lss_A 113 SKDLSDQVAGLAK 125 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 189
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=51.59 E-value=13 Score=27.98 Aligned_cols=25 Identities=4% Similarity=-0.117 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.+..+...|..||.+|+.++..+++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777766654
No 190
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=51.55 E-value=91 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
+|...|..|..|+..|..++..++++...+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999988888876653
No 191
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.01 E-value=50 Score=27.54 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
.|+..+..|+.....++.+++.++
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 192
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.93 E-value=1.1e+02 Score=25.72 Aligned_cols=27 Identities=4% Similarity=-0.012 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+..|.+..+....-.-+|..++++|..
T Consensus 71 i~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 71 LQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444433
No 193
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.95 E-value=38 Score=27.16 Aligned_cols=13 Identities=15% Similarity=0.274 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEA 361 (424)
Q Consensus 349 ELE~KVq~Lq~EN 361 (424)
..+..+..|+.+.
T Consensus 37 ~kd~~I~eLEk~L 49 (72)
T 3nmd_A 37 QRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 194
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=49.85 E-value=24 Score=24.75 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
+|.+..+.+...|++|+..|+.+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 195
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=49.40 E-value=9.4 Score=36.22 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ 383 (424)
+=|+....--+......+++..+++.|+.||..|.+++..|+++.....++-.
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~ 186 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTI 186 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34455555556667777889999999999999999999888887665554433
No 196
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.99 E-value=63 Score=27.78 Aligned_cols=47 Identities=15% Similarity=-0.010 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.+=-..|..|+..+..|.+++..-+........||..|+..++.++.
T Consensus 36 ~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 36 TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555666666665555556666677777777766543
No 197
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=48.92 E-value=1.2e+02 Score=25.45 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 336 AARSKERKMRYISELEQKVQTLQ 358 (424)
Q Consensus 336 AqRSReRKK~YieELE~KVq~Lq 358 (424)
++.+..=.-++..+|+.+|..++
T Consensus 20 ~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 20 ARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666644
No 198
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=48.69 E-value=16 Score=29.26 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
++|..++..++..+..|..=+..-+..+..|+.+|+-||..|-.+|.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555666666777788888888877776664
No 199
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=48.55 E-value=98 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEA 361 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN 361 (424)
|+..+.-|..||..++.+..+.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444433
No 200
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.18 E-value=1.7e+02 Score=29.44 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
+..|..+-.++..++..|+.+...+.
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 201
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=48.08 E-value=84 Score=23.49 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+..||.++..++.-...+...+..+......+..++...+..+..+++
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~ 54 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSS 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHH
Confidence 344566666555544445555555554444444444444444555544
No 202
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.99 E-value=24 Score=23.82 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 014471 377 ELILPIAEFLIVL 389 (424)
Q Consensus 377 ~L~~EN~ELK~RL 389 (424)
.|+.||++||.++
T Consensus 10 sleaenkqlkakv 22 (31)
T 1p9i_A 10 SLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555554444
No 203
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.84 E-value=74 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..|+.+.+.|+.....||.+||++
T Consensus 22 laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444545555555555555555443
No 204
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.70 E-value=51 Score=24.05 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
|-.++..+-++...-+.+..+|+.++..||..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666666666666554
No 205
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=46.59 E-value=54 Score=24.63 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
++..++..|+.+...++..++...++++.|..-.-.|...|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44555555666666666665555555555555444444333
No 206
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=46.38 E-value=28 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 342 RKMRYISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 342 RKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.|...|.+||..+..-..|+.+|+.++..++.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888777766553
No 207
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=46.37 E-value=27 Score=33.98 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
+.+++.|+.++..|.++++.|+.....+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555544444443
No 208
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.35 E-value=34 Score=28.89 Aligned_cols=31 Identities=26% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 360 EATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 360 EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
+...|+.+|..|+.++..|..++..|..+|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666655553
No 209
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=46.02 E-value=1e+02 Score=29.70 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAI 397 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaq 397 (424)
.-++-|+.+-.....|..++-.+|+.|+.-. +-+-.||..+||...
T Consensus 163 ~~LelL~IRK~ma~sEI~EID~KI~~L~~mR-------~~vl~RLA~lEqdEl 208 (242)
T 3uux_B 163 NSLEFLNIQKNSTLSEIRDIEVEVENLRQKK-------EKLLGKIANIEQNQL 208 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHH
Confidence 3456778888888888888777777765433 335567777776543
No 210
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=45.75 E-value=51 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 339 SKERKMRYISELEQKVQTL 357 (424)
Q Consensus 339 SReRKK~YieELE~KVq~L 357 (424)
.+..+..-+.+++.-...|
T Consensus 23 q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 23 QKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 211
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.72 E-value=1e+02 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
..+.+|..+-..++.+..+|+++...+.++...+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555555554443
No 212
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=45.58 E-value=17 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTIL 371 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~L 371 (424)
|...|..|+.++..|
T Consensus 5 lkqknarlkqeiaal 19 (28)
T 3ra3_B 5 LKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHH
Confidence 333344444433333
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.44 E-value=32 Score=34.82 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..+|..+++.|+.+...|..|...++.+...+..|...++
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ 83 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQ 83 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555444444444333333333333
No 214
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=45.26 E-value=1e+02 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=20.3
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANR 333 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNR 333 (424)
.|+..++..+..=..|.++- .--+.+|+++...
T Consensus 54 ~Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 54 IFNEEALKYLEMILCLKNTG-MPIQKIKQFIDWS 86 (148)
T ss_dssp EBCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhh
Confidence 46777777666666665533 3456677777643
No 215
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=44.57 E-value=56 Score=32.15 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
+|+++|+.+++.|+.+..+|.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555554444
No 216
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.46 E-value=1.2e+02 Score=24.28 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
..+..++.+++.|+............|+..+..|..|.+.|..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555545555555555555555555555544
No 217
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.38 E-value=1.1e+02 Score=28.69 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTE 360 (424)
Q Consensus 348 eELE~KVq~Lq~E 360 (424)
.+|+.++..|+..
T Consensus 69 ~~l~~e~~el~d~ 81 (213)
T 4ani_A 69 AELEAKLSEMEHR 81 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 218
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.20 E-value=24 Score=34.38 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=3.7
Q ss_pred HHHHHhhcc
Q 014471 175 DLFNEYMNL 183 (424)
Q Consensus 175 dl~~~ym~l 183 (424)
|+...+-.|
T Consensus 72 ev~~~lK~L 80 (315)
T 2ve7_A 72 EVPRIFKDL 80 (315)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 344444333
No 219
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.17 E-value=2.1e+02 Score=29.70 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014471 346 YISELEQKV 354 (424)
Q Consensus 346 YieELE~KV 354 (424)
|+..|..++
T Consensus 122 ~i~~Iq~sl 130 (464)
T 1m1j_B 122 YVNMIDNKL 130 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 220
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=44.02 E-value=44 Score=30.87 Aligned_cols=10 Identities=50% Similarity=0.757 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 014471 97 SENLPPRRGH 106 (424)
Q Consensus 97 ~~~lpprk~H 106 (424)
..+|-||..|
T Consensus 11 ~~~~~~~~~~ 20 (184)
T 3w03_C 11 SSGLVPRGSH 20 (184)
T ss_dssp ----------
T ss_pred ccCcccCCCc
Confidence 5667888755
No 221
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.87 E-value=2e+02 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+..|+..+..|...+.+|..+|..|+..|+.|....+.+-
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555555555555555555555555555555554443
No 222
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=43.81 E-value=51 Score=32.71 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILP 381 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~E 381 (424)
+++||..+..+...-..|+.+...|+.++..|+..
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ 39 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR 39 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444444444433
No 223
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=43.08 E-value=62 Score=28.56 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 014471 401 HLFVFLTLFF 410 (424)
Q Consensus 401 ~L~ealta~f 410 (424)
.|+.|++.+|
T Consensus 87 qLQ~AY~~Lf 96 (130)
T 3cl3_D 87 QLQVAYHQLF 96 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556666666
No 224
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.93 E-value=2.4e+02 Score=27.63 Aligned_cols=10 Identities=10% Similarity=0.075 Sum_probs=4.0
Q ss_pred hHHHHHhhcc
Q 014471 174 DDLFNEYMNL 183 (424)
Q Consensus 174 ddl~~~ym~l 183 (424)
.+.|..|.+|
T Consensus 203 ~~al~~~~~l 212 (471)
T 3mq9_A 203 KAGLTFLVDL 212 (471)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 225
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=42.86 E-value=1.5e+02 Score=25.00 Aligned_cols=45 Identities=24% Similarity=0.195 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVT-------ILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~-------~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+||.+...|..+...|..++. ..+..+..|.....+|-.+|..++
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554443 344455556666666665555544
No 226
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=42.74 E-value=1.5e+02 Score=24.84 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014471 330 LANRQSAARSKERKMRYISELEQKVQTLQ---TEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 330 LkNRESAqRSReRKK~YieELE~KVq~Lq---~EN~~Ls~Ql~~Lqren~~ 377 (424)
..|-.+|-..=..|+..|++|-..+..++ ..+.-|.+|+.....++..
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667888888877777766 5566677887777766654
No 227
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.99 E-value=33 Score=23.42 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+..|+++....+.||.+|.+.+..+|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555566666777777766655543
No 228
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.82 E-value=36 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
..||.-|..|+..|..|...+..|+++...|+
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 35666677777777777776666666665554
No 229
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=41.75 E-value=1.5e+02 Score=29.34 Aligned_cols=24 Identities=17% Similarity=-0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 014471 395 RAILIVHLFVFLTLFFFREILRGLQ 419 (424)
Q Consensus 395 qaqLrd~L~ealta~f~rEI~~~lq 419 (424)
....|+.+... ++.++++|.+++|
T Consensus 81 ~~~~Rd~~a~~-k~~Le~~ierLs~ 104 (302)
T 3ibp_A 81 AIVERDEVGAR-KNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 34455544443 6677888888665
No 230
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.26 E-value=84 Score=32.70 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 322 DPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 322 DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
++..++..+++|-... --...+.+|..+...++.+..+|+++...+.++...++.
T Consensus 14 n~~~v~~~~~~R~~~~----~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 14 DPEIIKASQKKRGDSV----ELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp CHHHHHHHHHHHTCCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666663210 013456667777777777777777777777776665544
No 231
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=40.92 E-value=63 Score=29.84 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=4.0
Q ss_pred cChHHHHH
Q 014471 321 SDPKRAKR 328 (424)
Q Consensus 321 ~DpKR~RR 328 (424)
.||..+-|
T Consensus 137 ~~p~e~i~ 144 (184)
T 3w03_C 137 ENPAEVIR 144 (184)
T ss_dssp SCHHHHHH
T ss_pred CChHHHHH
Confidence 35555544
No 232
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=40.54 E-value=57 Score=22.30 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|++++..|.++...|.-|...||
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 233
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.22 E-value=92 Score=29.36 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 360 EATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 360 EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+....-.+...|+.....|..|+.+|+.+|+.++
T Consensus 38 ~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 38 NYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3333333444455555556667777777766665
No 234
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=40.08 E-value=2.5e+02 Score=26.75 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSA-ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 329 iLkNRESA-qRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
-|+|||.. +.+|.||+.-..++. .|....- -+.++..|+++....+.++.....+|..+..
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIA----HLKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----HHhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 46777755 566666665544443 2322111 1234555555555555555444444444433
No 235
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=39.89 E-value=83 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 341 ERKMRYISELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 341 eRKK~YieELE~KVq~Lq~EN~~Ls~Ql 368 (424)
.||.+.+++|. .|+.+.+.|+.|+
T Consensus 6 rrr~e~ld~l~----~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEML----DLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 35555555543 3444555555443
No 236
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.87 E-value=1.2e+02 Score=25.12 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.|++++..|+.....|..++..++.+...+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444444333
No 237
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.82 E-value=1.7e+02 Score=24.70 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVL 389 (424)
Q Consensus 374 en~~L~~EN~ELK~RL 389 (424)
+...|..++.+|+.+|
T Consensus 19 e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 19 EIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 238
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.50 E-value=1.3e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
++...+..|+.+...++..++...++++.|.
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444334444433
No 239
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=39.22 E-value=81 Score=21.89 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
.|++++..|.++.-+|+-....||+++.++
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777887878888777654
No 240
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=39.20 E-value=1.3e+02 Score=23.57 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
++.+..|++.|+.|...+..++..|+++.+---...+.+....|
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q 47 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQ 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555666667777777766666666655444334444443333
No 241
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=38.92 E-value=1.4e+02 Score=23.47 Aligned_cols=56 Identities=18% Similarity=0.052 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILI-VHLFVFLTLFFFREI 414 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLr-d~L~ealta~f~rEI 414 (424)
.|-..|..++-.|+.-..+..++...+-.+|..+|...+.+ +++-+.++...+.|.
T Consensus 6 EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~~~~e~~~ 62 (64)
T 3hrn_A 6 EEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDGVAEDER 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccHhhc
Confidence 45556777777777777777777777878888888755554 344567777666664
No 242
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=38.84 E-value=2.3e+02 Score=25.91 Aligned_cols=74 Identities=8% Similarity=0.096 Sum_probs=36.4
Q ss_pred CCCHHHHhhhhchh--HHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANE--KLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 300 e~s~~e~KKi~~~~--~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~ 377 (424)
..|-.|++.+..++ .|..++. .-.-++-+...++.. +-..+.+.+|+.++..+......+..++..|+.+...
T Consensus 37 ~LS~~eL~~LL~~~~dlL~~~v~-~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~ 111 (192)
T 2p22_C 37 LLSSKEIIDLIQTHRHQLELYVT-KFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVA 111 (192)
T ss_dssp SCTTHHHHHHHHHCHHHHHHHGG-GGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhChHHHHHHHHH-hchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778777774 3444432 111233344444444 2233334555555555555555555555555555533
Q ss_pred H
Q 014471 378 L 378 (424)
Q Consensus 378 L 378 (424)
.
T Consensus 112 k 112 (192)
T 2p22_C 112 S 112 (192)
T ss_dssp H
T ss_pred H
Confidence 3
No 243
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.62 E-value=1.1e+02 Score=22.34 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFL 386 (424)
Q Consensus 371 Lqren~~L~~EN~ELK 386 (424)
|+.+...|+.||.-||
T Consensus 8 lenevaslenenetlk 23 (49)
T 3he5_A 8 LENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHH
Confidence 3444444555555554
No 244
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=38.54 E-value=55 Score=22.08 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVT 369 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~ 369 (424)
+.||.++..|+...+.|..++.
T Consensus 4 ealekkcaalesklqalekkle 25 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444333
No 245
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.41 E-value=1.4e+02 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
..+..|+.++..|+.+...+.++
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666554
No 246
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=38.16 E-value=1.5e+02 Score=27.72 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~ 366 (424)
.|+.++..|+.++..|..
T Consensus 63 ~l~~~l~~l~~e~~el~d 80 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEH 80 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 247
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.07 E-value=1.9e+02 Score=24.65 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTILQ 372 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~Lq 372 (424)
|+.+..+|+.++..|+
T Consensus 23 L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 248
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.94 E-value=1.5e+02 Score=24.85 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEA 361 (424)
Q Consensus 348 eELE~KVq~Lq~EN 361 (424)
.+||.+++.|+.|.
T Consensus 50 ~eL~~EI~~L~~eI 63 (96)
T 1t3j_A 50 KHLEEEIARLSKEI 63 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544444
No 249
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=37.74 E-value=1.3e+02 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 363 TLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 363 ~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
+|-.|++.|..+|..|..|...=-.+|..||
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 3445555555544444444444334444444
No 250
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.65 E-value=1.3e+02 Score=22.85 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
+++|...+..-..+....+.+|..|.+..+.|..|...||
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466666665555555566666666666666666655443
No 251
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=37.57 E-value=2.2e+02 Score=25.35 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 332 NRQSAARSKERKMRYISELEQKVQTLQTEATTLSA------------QVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 332 NRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~------------Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
||..--.++.+=-...+.|=.+|..||.-...|+. ++..++++...+..+.+.|+..|..
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556666666666666666654 4555666666666666666555543
No 252
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=37.25 E-value=73 Score=29.95 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 375 IAELILPIAEFLIVLL 390 (424)
Q Consensus 375 n~~L~~EN~ELK~RLq 390 (424)
|..+......|-.+|-
T Consensus 98 Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 98 NDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 253
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.19 E-value=70 Score=32.19 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
.|.+..+++-.++..--.++-.++..|..+-.+|..++..|+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 9 EKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544443321101222445555555555555555555555555544433
No 254
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=37.06 E-value=57 Score=22.30 Aligned_cols=26 Identities=8% Similarity=-0.118 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 369 TILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 369 ~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
+.|.++.+.|...|...|+++|++..
T Consensus 4 qalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555566666666666666543
No 255
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.79 E-value=3.3e+02 Score=28.72 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 337 ARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIRAILIVHLFVFLTLF 409 (424)
Q Consensus 337 qRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta~ 409 (424)
+.-..+..+|-.||++--+.-+.--....+.++..+.++..+..||..+++|-... ++.--..|....+++
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~a--ka~Ye~~l~kY~~dl 75 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADA--KADYEAKLAKYQADL 75 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 256
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.67 E-value=2.3e+02 Score=25.30 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 331 ANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 331 kNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.|..|--.+-.+=-+..+.+|.+|+.|+........+.....+....|..++..|..+|
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433333333333344455555555555554444444444444444444444444444
No 257
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.28 E-value=1.1e+02 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.092 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 359 TEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 359 ~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.||..|..-+..|+.++..|+.....|...+..+|.
T Consensus 17 kenaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 467777766666666666666666666655555543
No 258
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.24 E-value=34 Score=23.09 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+.|-.-+..|+.||.+|++++..|-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888776654
No 259
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=35.97 E-value=57 Score=25.68 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 375 IAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 375 n~~L~~EN~ELK~RLqaLEQ 394 (424)
...|..+.-.||.+|..+-+
T Consensus 46 l~~LKk~KL~LKDeI~~lL~ 65 (76)
T 1zhc_A 46 VSHMKKQKLKLKDEIHSMII 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444333
No 260
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=35.77 E-value=1.8e+02 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..|-+++..|-.+...|..|+..++
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 261
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=35.76 E-value=1.9e+02 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLS 365 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls 365 (424)
.++++....|+.+...+.
T Consensus 25 ~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 25 VDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 262
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=35.76 E-value=18 Score=35.73 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIA 376 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~ 376 (424)
.|..||.+|..++.+...|...+..++.+..
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~ 35 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIV 35 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH
Confidence 3445666666655555555544444443333
No 263
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.55 E-value=72 Score=22.34 Aligned_cols=19 Identities=16% Similarity=0.227 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RL 389 (424)
|+.....|..+|.+|..++
T Consensus 6 LE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3333444444444444433
No 264
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.53 E-value=1e+02 Score=22.31 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTL 357 (424)
Q Consensus 344 K~YieELE~KVq~L 357 (424)
+.||.+||.+-..|
T Consensus 9 knyiqeleernael 22 (46)
T 3he4_B 9 KNYIQELEERNAEL 22 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 34555555544433
No 265
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.38 E-value=79 Score=28.60 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=14.1
Q ss_pred CCHHHHhhhhchhHHHHhhhcChHHHHHHHHHH
Q 014471 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANR 333 (424)
Q Consensus 301 ~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNR 333 (424)
|+..++..+..=..|.++- .--+.+|++|.++
T Consensus 45 y~~~~~~~l~~i~~l~~~g-~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 45 YTDSQLIHLDLIKSLKYIG-TPLEEMKKAQDLE 76 (278)
T ss_dssp EETGGGGHHHHHHHHHHTT-CCHHHHHHHTTSC
T ss_pred cCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhC
Confidence 3333343333333343332 2345566666654
No 266
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.16 E-value=1.8e+02 Score=26.11 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFLIRAILIVHLF 403 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLEQqaqLrd~L~ 403 (424)
+..+...|..++.+|...++.++.+.||.++..
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASR 117 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASR 117 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444555555555555555555554443
No 267
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.86 E-value=58 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
..+||.++..++.|.......+...++....|..+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~ 376 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQ 376 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4688888888888877776666655554444444444333
No 268
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.76 E-value=2.4e+02 Score=24.92 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI-RAILIVHLF 403 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ-qaqLrd~L~ 403 (424)
+|+.-|+.++..-..-...|..-....+......+...++.|.++..+.+ ...|+.++.
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 269
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.59 E-value=50 Score=22.63 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 014471 350 LEQKVQTLQTE 360 (424)
Q Consensus 350 LE~KVq~Lq~E 360 (424)
||..+..|++-
T Consensus 4 lee~~r~l~~i 14 (32)
T 2akf_A 4 LEEDVRNLNAI 14 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 270
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=34.56 E-value=2.3e+02 Score=24.61 Aligned_cols=13 Identities=0% Similarity=0.020 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 014471 396 AILIVHLFVFLTL 408 (424)
Q Consensus 396 aqLrd~L~ealta 408 (424)
.-|...+.++++.
T Consensus 129 ~~L~~kf~~~m~~ 141 (180)
T 1s94_A 129 STISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 271
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.38 E-value=15 Score=31.79 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL---ILPIAEFLIVLLP 391 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L---~~EN~ELK~RLqa 391 (424)
.+++.+++.|......|..++..|+.+...| ..+..+++.-+..
T Consensus 5 ~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~ 51 (151)
T 2zdi_C 5 AQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLEN 51 (151)
T ss_dssp CSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777766667777777777776666 5554555444433
No 272
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=34.17 E-value=1.4e+02 Score=27.06 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 337 ARSKERKMRYISELEQKVQTLQ 358 (424)
Q Consensus 337 qRSReRKK~YieELE~KVq~Lq 358 (424)
+..-++|++|+.||..+...++
T Consensus 18 ~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 18 LERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888888888766554
No 273
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.08 E-value=1.7e+02 Score=26.27 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
+||..++.-.+-...|...|..|.
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~Lr 125 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILR 125 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHH
Confidence 455544444333344444444443
No 274
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=33.99 E-value=1.4e+02 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIA 383 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ 383 (424)
|...|..|..++..|....+
T Consensus 4 L~k~i~~l~~E~eel~~klk 23 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMK 23 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334443333333333333
No 275
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.74 E-value=1.1e+02 Score=23.57 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIA 383 (424)
Q Consensus 371 Lqren~~L~~EN~ 383 (424)
|.+.+..|....+
T Consensus 16 LKq~n~~L~~kv~ 28 (58)
T 3a2a_A 16 LKQMNVQLAAKIQ 28 (58)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 276
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.35 E-value=1.6e+02 Score=23.24 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATT--L----SAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~--L----s~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
|+.||.++..|+.+... + ..++..|..+...+..+..++-.|=..|
T Consensus 31 Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554432 1 2334444444444444444444444333
No 277
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.27 E-value=0.69 Score=38.64 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=32.7
Q ss_pred CCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 014471 301 FNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMR 345 (424)
Q Consensus 301 ~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~ 345 (424)
.+-.|.+..+..-.|.+--+.--+.+||--+||.+||+.|+||..
T Consensus 43 Lpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 43 LPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp SCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 344566666666666554445567889999999999999999864
No 278
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=33.23 E-value=67 Score=28.38 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTI 370 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~ 370 (424)
..||.++..++.....+..++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~ 25 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLAD 25 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665555544444443333
No 279
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.95 E-value=67 Score=27.57 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTIL 371 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~L 371 (424)
.|+..+..|+.....+..+++.+
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 280
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.95 E-value=2e+02 Score=23.38 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 327 KRILANRQSAARSKERKMRY-ISELEQKVQTLQTEATT-----LSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 327 RRiLkNRESAqRSReRKK~Y-ieELE~KVq~Lq~EN~~-----Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
=.-|-||-+.--.|.|-.+. =..||.++..++..... ....|..|+++...+..++..|..++..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444443221 12244444443332111 2344555666666666666666555544
No 281
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.68 E-value=1.9e+02 Score=27.41 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 362 TTLSAQVTILQVSIAELILPIAEFLIVLL 390 (424)
Q Consensus 362 ~~Ls~Ql~~Lqren~~L~~EN~ELK~RLq 390 (424)
..+++++..|++....+..|++.+...|.
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~ 202 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLA 202 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 282
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.52 E-value=70 Score=21.17 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTI 370 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~ 370 (424)
|+.||..|..++..
T Consensus 5 lefendaleqkiaa 18 (28)
T 3ra3_A 5 LEFENDALEQKIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHH
Confidence 34444444444433
No 283
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=32.27 E-value=2.6e+02 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=14.6
Q ss_pred cChHHHHHHHHHHHHHHHHHH
Q 014471 321 SDPKRAKRILANRQSAARSKE 341 (424)
Q Consensus 321 ~DpKR~RRiLkNRESAqRSRe 341 (424)
.+-.|.++.|-||.-+.--|.
T Consensus 34 dE~eR~~k~lE~r~~~deEr~ 54 (147)
T 2b9c_A 34 DESERGMKVIESRAQKDEEKM 54 (147)
T ss_dssp HHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHH
Confidence 345577888888887766653
No 284
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.06 E-value=98 Score=21.91 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++..|..++..|..|...||
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444443
No 285
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.04 E-value=3.9e+02 Score=27.77 Aligned_cols=9 Identities=22% Similarity=0.623 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014471 349 ELEQKVQTL 357 (424)
Q Consensus 349 ELE~KVq~L 357 (424)
+||.+|..|
T Consensus 104 eLe~~l~~l 112 (464)
T 1m1j_B 104 DLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 286
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=32.00 E-value=3.4e+02 Score=25.88 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLIR 395 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQq 395 (424)
|..+|.+|..-+...+.-...|..++-+....+.+..-|+.+++.++..
T Consensus 86 I~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~ 134 (242)
T 3c9i_A 86 IKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGR 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhccc
Confidence 3344444444444444445555566666666666666666666666554
No 287
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.92 E-value=1.2e+02 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++..|..++..|..|...|+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444444444444444443
No 288
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.83 E-value=48 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 365 SAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 365 s~Ql~~Lqren~~L~~EN~EL 385 (424)
+.||..|+.....|..|...|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 289
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=31.60 E-value=97 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren 375 (424)
.+.+.++|.+.+.|+..|..|..+++.|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 34567888999999999999999888877554
No 290
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.28 E-value=1.8e+02 Score=25.69 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQV 368 (424)
Q Consensus 357 Lq~EN~~Ls~Ql 368 (424)
...|...|..++
T Consensus 44 ~~~e~~~L~~~l 55 (135)
T 2e7s_A 44 RDDEVKRLREDI 55 (135)
T ss_dssp HHHHHHTHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 344444444433
No 291
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.15 E-value=24 Score=33.32 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 375 IAELILPIAEFLIVL 389 (424)
Q Consensus 375 n~~L~~EN~ELK~RL 389 (424)
|..|..||.+|+.++
T Consensus 28 N~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 28 NQHLKERLEELAQLE 42 (255)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 292
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.12 E-value=1.7e+02 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQ 358 (424)
Q Consensus 346 YieELE~KVq~Lq 358 (424)
.+.+|+..+..|.
T Consensus 32 ~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 32 KIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 3444555554443
No 293
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=31.03 E-value=2e+02 Score=22.92 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQV 368 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql 368 (424)
++|..+|+.|.....++.-+|
T Consensus 6 ~eLkkevkKL~~~A~q~kmdL 26 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDL 26 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 445555555555444444443
No 294
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.86 E-value=3.7e+02 Score=28.38 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 340 KERKMRYISELEQKVQTLQTEATTLSA 366 (424)
Q Consensus 340 ReRKK~YieELE~KVq~Lq~EN~~Ls~ 366 (424)
+++.++.-.-+|.+-+.++....+|.+
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~ 533 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTE 533 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455555555555555544
No 295
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=30.17 E-value=69 Score=25.20 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLS-----AQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls-----~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
.|-.++..|..|...++ ++-+.|+++...|..|...|+..|.+
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555543 34667888888888888888777654
No 296
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.93 E-value=26 Score=23.24 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 378 LILPIAEFLIVLLPFL 393 (424)
Q Consensus 378 L~~EN~ELK~RLqaLE 393 (424)
|+-||..|.+++.++.
T Consensus 5 lefendaleqkiaalk 20 (28)
T 3ra3_A 5 LEFENDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3444444444444443
No 297
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.81 E-value=49 Score=28.36 Aligned_cols=24 Identities=4% Similarity=-0.061 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 370 ILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 370 ~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.+......|..|+++|+.+++.+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444
No 298
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.68 E-value=73 Score=22.47 Aligned_cols=16 Identities=19% Similarity=-0.006 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 014471 374 SIAELILPIAEFLIVL 389 (424)
Q Consensus 374 en~~L~~EN~ELK~RL 389 (424)
....|+.+|..|..+|
T Consensus 21 kVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 21 KVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 299
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.43 E-value=3.1e+02 Score=24.51 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RL 389 (424)
.|..|..+++..+.....-...+..|+..+..|..+...-|.+.
T Consensus 78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~ 121 (155)
T 2efr_A 78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY 121 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554444444443
No 300
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.40 E-value=57 Score=33.02 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTIL 371 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~L 371 (424)
.|.++|.+++.++.....|..+...|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l 51 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNAL 51 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655554444444443333
No 301
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.34 E-value=2.7e+02 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
++.+|+.+++.|+.....|...+...+.
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444443
No 302
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.24 E-value=90 Score=21.37 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFLIRA 396 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLEQqa 396 (424)
|+++...|..-.++|.+|+..+|...
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666665543
No 303
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=28.13 E-value=5.8e+02 Score=27.30 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014471 323 PKRAKRILANRQSAARSKER---KMRYISELEQKVQTLQTEATTL 364 (424)
Q Consensus 323 pKR~RRiLkNRESAqRSReR---KK~YieELE~KVq~Lq~EN~~L 364 (424)
+.++..++. +++++.|.+ +-.-+++|++++..|+.|...|
T Consensus 378 p~kai~lld--ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 378 PDKAIDLID--EAAARLRMALESAPEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHHH--HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 444444443 444444443 4566778888887777665443
No 304
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.72 E-value=1.3e+02 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
..||..+..+..|..++...+..+|.+.+.|
T Consensus 11 k~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 11 KAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhheeeccccchhhhhhhhhHHH
Confidence 3455555555555555555554444444443
No 305
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.59 E-value=49 Score=21.90 Aligned_cols=15 Identities=7% Similarity=-0.155 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 379 ILPIAEFLIVLLPFL 393 (424)
Q Consensus 379 ~~EN~ELK~RLqaLE 393 (424)
...|..||+++.++|
T Consensus 6 kqknarlkqeiaale 20 (28)
T 3ra3_B 6 KQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHH
Confidence 334444444444433
No 306
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.36 E-value=2.1e+02 Score=21.96 Aligned_cols=30 Identities=10% Similarity=-0.133 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 376 AELILPIAEFLIVLLPFLIRAILIVHLFVFLTL 408 (424)
Q Consensus 376 ~~L~~EN~ELK~RLqaLEQqaqLrd~L~ealta 408 (424)
..|..||+.|+ ++||.+.+.|-.|...+..
T Consensus 20 ~eL~qe~k~m~---k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 20 QELRQDNKKMK---KSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33344444444 3344444445555544433
No 307
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.10 E-value=1e+02 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.041 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 371 LQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 371 Lqren~~L~~EN~ELK~RLqaLE 393 (424)
|++.+..|+...+.|..+|+++|
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544
No 308
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.78 E-value=2.9e+02 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014471 357 LQTEATTLSAQVTILQVSI 375 (424)
Q Consensus 357 Lq~EN~~Ls~Ql~~Lqren 375 (424)
|+.-+.+|...|..|+.+.
T Consensus 47 L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444333
No 309
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.72 E-value=84 Score=27.77 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATT 363 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~ 363 (424)
.+-.||.+++.++.|...
T Consensus 31 k~~~~e~~~~~~~~Elee 48 (130)
T 3cl3_D 31 RARAASEQARQLESEREA 48 (130)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333444444444444433
No 310
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.59 E-value=3.1e+02 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 346 YISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 346 YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
.+.+|+.+++.|+.+...+..++..+...
T Consensus 227 ~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 227 AAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666655555555554444
No 311
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=26.55 E-value=2e+02 Score=23.18 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 354 VQTLQTEATTLSAQVTILQVSIAELILPIAEFLIV 388 (424)
Q Consensus 354 Vq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~R 388 (424)
+..|..+...+=.++-.|-.+-..+..+.-++|..
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555556666666666654
No 312
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=26.53 E-value=6.1e+02 Score=27.02 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=4.9
Q ss_pred CCcccccc
Q 014471 113 IPLGFSAM 120 (424)
Q Consensus 113 ~p~g~~~~ 120 (424)
|.|||+.+
T Consensus 88 ma~G~Pa~ 95 (551)
T 2b5u_A 88 VAFGFPAL 95 (551)
T ss_dssp EETTCEEE
T ss_pred hhcCccee
Confidence 55777654
No 313
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.41 E-value=1.3e+02 Score=28.52 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=4.0
Q ss_pred hHHHHHhhcc
Q 014471 174 DDLFNEYMNL 183 (424)
Q Consensus 174 ddl~~~ym~l 183 (424)
+++..++..+
T Consensus 27 ~~vl~~L~~l 36 (357)
T 3rrk_A 27 RELLAELQKA 36 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 3344444333
No 314
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.35 E-value=2.2e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.|-.+|+.|+.||..|..-+..=|+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqk 38 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQR 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666676666666655444333
No 315
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.24 E-value=65 Score=31.86 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 014471 327 KRILANRQSA 336 (424)
Q Consensus 327 RRiLkNRESA 336 (424)
+..|+||.+.
T Consensus 304 ~~~lq~~L~~ 313 (406)
T 4dyl_A 304 VESVQHTLTS 313 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5567777554
No 316
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=26.23 E-value=1.7e+02 Score=26.86 Aligned_cols=15 Identities=7% Similarity=0.014 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 351 EQKVQTLQTEATTLS 365 (424)
Q Consensus 351 E~KVq~Lq~EN~~Ls 365 (424)
|+.|+.||.++..|.
T Consensus 134 ertV~kLqkeiD~LE 148 (175)
T 3mud_A 134 LDTTAKNEKSIDDLE 148 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 317
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.03 E-value=1.4e+02 Score=26.94 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=0.0
Q ss_pred CccccccccccCCCCCCCC
Q 014471 251 RHCRSVSMDSYMGNLPFDD 269 (424)
Q Consensus 251 rH~rS~S~Ds~~~~l~~~~ 269 (424)
+|.+|.-||-...+|-|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (175)
T 3lay_A 4 HHHHSSGVDLGTENLYFQS 22 (175)
T ss_dssp -------------------
T ss_pred ccccccccccchhHHHhhH
Confidence 5777888887777766643
No 318
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=25.58 E-value=4e+02 Score=28.17 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 349 ELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 349 ELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
-++..+..|+.+...+.+++..++.+...|...-.+++.+|..+
T Consensus 349 ~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 349 AVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677777777777766666666666666544
No 319
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=25.06 E-value=3.5e+02 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAEFLIVLLPFLI 394 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQ 394 (424)
.++..+|+..++.+......+.......+..|..+...+-..|.+|+.
T Consensus 75 yeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 75 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456777777777777777777777777777777776666666666654
No 320
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.86 E-value=1.1e+02 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.160 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEF 385 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~EL 385 (424)
|..++..|..++..|..|...|
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444444444443333
No 321
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.78 E-value=3.5e+02 Score=23.63 Aligned_cols=34 Identities=9% Similarity=0.051 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 358 QTEATTLSAQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 358 q~EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
-.+...++.+++.|..++..+..|.++++.++.+
T Consensus 49 l~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~ 82 (123)
T 4aj5_K 49 LKELSVIKSRYQTLYARFKPVAVEQKESKSRICA 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555566666666655543
No 322
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.68 E-value=2e+02 Score=29.44 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 368 VTILQVSIAELILPIAEFLIVL 389 (424)
Q Consensus 368 l~~Lqren~~L~~EN~ELK~RL 389 (424)
|..||...........+|+..+
T Consensus 107 i~~l~~~~~~~~~~i~~L~~~v 128 (411)
T 3ghg_C 107 IRYLQEIYNSNNQKIVNLKEKV 128 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 323
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.47 E-value=2.3e+02 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=8.6
Q ss_pred HhhhcChHHHHHHHHHHHH
Q 014471 317 EIALSDPKRAKRILANRQS 335 (424)
Q Consensus 317 ElAl~DpKR~RRiLkNRES 335 (424)
++...|-.+++-.|-.+++
T Consensus 23 ~l~~~~~~~~~e~l~~~q~ 41 (174)
T 2p22_A 23 ELYREDVDYVADKILTRQT 41 (174)
T ss_dssp HHHHHHHHHHHHHTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444455544444443
No 324
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.20 E-value=29 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014471 343 KMRYISELEQKVQTLQTEATTL 364 (424)
Q Consensus 343 KK~YieELE~KVq~Lq~EN~~L 364 (424)
+..|++.||.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999887655444
No 325
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.12 E-value=1.8e+02 Score=25.05 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 014471 377 ELILPIAEFL 386 (424)
Q Consensus 377 ~L~~EN~ELK 386 (424)
.|..||.+..
T Consensus 96 ~L~~E~~~~~ 105 (132)
T 1ykh_B 96 MLQKKLVEVE 105 (132)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 326
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.06 E-value=3.6e+02 Score=27.63 Aligned_cols=12 Identities=17% Similarity=-0.070 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 014471 378 LILPIAEFLIVL 389 (424)
Q Consensus 378 L~~EN~ELK~RL 389 (424)
|+.....||+++
T Consensus 118 Le~~i~~lk~~V 129 (390)
T 1deq_A 118 LRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 327
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=23.80 E-value=2.2e+02 Score=23.63 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=8.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH
Q 014471 349 ELEQKVQ-TLQTEATTLSAQVT 369 (424)
Q Consensus 349 ELE~KVq-~Lq~EN~~Ls~Ql~ 369 (424)
+|..+|+ .|+.....|..++.
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44444444444333
No 328
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.72 E-value=26 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
++.|..|++.|+.++..+..++..+++
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555543
No 329
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.20 E-value=1.8e+02 Score=25.72 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 014471 378 LILPIAEF 385 (424)
Q Consensus 378 L~~EN~EL 385 (424)
|..||.+.
T Consensus 97 Le~E~~~~ 104 (151)
T 1yke_B 97 LQKKLVEV 104 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 330
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=23.12 E-value=1.8e+02 Score=19.81 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQ 372 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lq 372 (424)
..|..+|+.|...|-.-+.+++.|.
T Consensus 4 qalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455556666666655555555544
No 331
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=23.01 E-value=7.8 Score=33.06 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELI 379 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~ 379 (424)
.||++++-. |+-..|.++...=++..-+.|+. +|-+.+-+.|-..=-. ..+ .+...|..++..|+.+...|.
T Consensus 7 ~~sd~~Lv~-m~v~elN~~L~~Ls~~e~~~lK~----~RR~lKNR~yAq~CR~--rk~-~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 7 SLTDEELVT-MSVRELNQHLRGLSKEEIIQLKQ----RRRTLKNRGYAASCRV--KRV-TQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp CCCHHHHHH-SCHHHHHHTTTTCCHHHHHHHHH----HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHTTTSSTTTTTT
T ss_pred CCCHHHHhc-CCHHHHHHHHhCCCHHHHHHHHH----HHHhhhhHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 466666543 34444444432222222222332 2333444444333222 222 255667777888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 380 LPIAEFLIVLLPFLI 394 (424)
Q Consensus 380 ~EN~ELK~RLqaLEQ 394 (424)
.||.+|+..++.+.+
T Consensus 79 ~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 79 SENASMKLELDALRS 93 (107)
T ss_dssp STTSHHHHTTTSSSS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988888766654
No 332
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.96 E-value=1.6e+02 Score=21.49 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELIL 380 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~ 380 (424)
++|=+++.....|...-..+|+.||.....|+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777776666654
No 333
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.93 E-value=4.8e+02 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
..|+.|+..+..|+.||.+|+.-
T Consensus 122 ~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 122 KEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666543
No 334
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.81 E-value=4.7e+02 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.008 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Q 014471 385 FLIVLLPFLIRAI-LIVHLFVFL 406 (424)
Q Consensus 385 LK~RLqaLEQqaq-Lrd~L~eal 406 (424)
.+.+|..++|.++ ++++|.+.+
T Consensus 172 ~~k~L~~~~~kv~~vr~~leelL 194 (261)
T 3rkg_A 172 KSKDLTLFYQKTLLIRDLLDELL 194 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777643 455554443
No 335
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.71 E-value=1.7e+02 Score=20.38 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++..|-.++..|..|...||
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444433
No 336
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=22.47 E-value=2.8e+02 Score=22.99 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAEL 378 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L 378 (424)
++.|.||+.--.|-..++..|-.|+.....+
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km 69 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKM 69 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666655555555555555555444433
No 337
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.98 E-value=5.1e+02 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 347 ISELEQKVQTLQTEATTLSAQVTILQVSIAE 377 (424)
Q Consensus 347 ieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~ 377 (424)
+.+|..+-..++.+...|+++...+.++...
T Consensus 39 ~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 39 IIEADKKWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 338
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.97 E-value=2.6e+02 Score=22.29 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCCHHHHhhhhchhHHHHhhhcChHHHHHHHHH
Q 014471 300 EFNDAELKKIWANEKLAEIALSDPKRAKRILAN 332 (424)
Q Consensus 300 e~s~~e~KKi~~~~~LaElAl~DpKR~RRiLkN 332 (424)
.|+..++..+..-..|.++- .-.+.++.++..
T Consensus 40 ~Y~~~dl~~l~~I~~l~~~G-~~l~~I~~~l~~ 71 (109)
T 1r8d_A 40 LYSDADLERLQQILFFKEIG-FRLDEIKEMLDH 71 (109)
T ss_dssp EBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHC
T ss_pred eeCHHHHHHHHHHHHHHHCC-CCHHHHHHHHhC
Confidence 36666666555444554432 234556666654
No 339
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=21.92 E-value=36 Score=24.65 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=10.7
Q ss_pred hhhhHHHHHhhc
Q 014471 171 DVADDLFNEYMN 182 (424)
Q Consensus 171 e~~ddl~~~ym~ 182 (424)
.++-|||++||+
T Consensus 26 qALQdLlseY~~ 37 (40)
T 4e17_B 26 QALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 578999999996
No 340
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=21.62 E-value=2.4e+02 Score=23.04 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 373 VSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 373 ren~~L~~EN~ELK~RLqaLE 393 (424)
+++...-.+..+++.+|.+++
T Consensus 57 ~~tyda~~~l~~ak~~L~~~e 77 (81)
T 3csx_A 57 EKTYEIFRELDQLKKKLNIWE 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 341
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.55 E-value=4.3e+02 Score=23.51 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=43.8
Q ss_pred hHHHHhh----hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 014471 313 EKLAEIA----LSDPKRAKRILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQ----------VSIAEL 378 (424)
Q Consensus 313 ~~LaElA----l~DpKR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lq----------ren~~L 378 (424)
.+|++|- ..|.+.+-|++++...- -++|.+|+..+-..+...+.-..-|.+-|..+. .-...|
T Consensus 20 ~~L~~Lirs~~PeDL~~AN~LiK~m~~~---d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL 96 (158)
T 1naf_A 20 KMLARLLKSSHPEDLRAANKLIKEMVQE---DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKEL 96 (158)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHH
T ss_pred HHHHHHHhcCChhhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHH
Confidence 3555554 23456677888876642 355566666666666666554444555454321 223456
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 379 ILPIAEFLIVLLPFL 393 (424)
Q Consensus 379 ~~EN~ELK~RLqaLE 393 (424)
....+.++.+|+.|-
T Consensus 97 ~~~Ck~~qp~i~~Li 111 (158)
T 1naf_A 97 YQRCERMRPTLFRLA 111 (158)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666676666554
No 342
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.34 E-value=3.3e+02 Score=22.13 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQVTILQV 373 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqr 373 (424)
.+-+.+||..-..|..+...+..+...|..
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444433
No 343
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.32 E-value=2.6e+02 Score=25.26 Aligned_cols=12 Identities=0% Similarity=-0.094 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 014471 376 AELILPIAEFLI 387 (424)
Q Consensus 376 ~~L~~EN~ELK~ 387 (424)
..|..|..+|+.
T Consensus 116 ~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 116 NAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 344
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=21.30 E-value=6.6e+02 Score=25.52 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014471 378 LILPIAEFLIVLLPF 392 (424)
Q Consensus 378 L~~EN~ELK~RLqaL 392 (424)
|+.+....+.+|+.|
T Consensus 247 le~~l~~~~~~I~~L 261 (450)
T 3r6n_A 247 EREKILEYKRQVQNL 261 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 345
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.23 E-value=7.7e+02 Score=26.27 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 329 ILANRQSAARSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVS 374 (424)
Q Consensus 329 iLkNRESAqRSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqre 374 (424)
+.+++.+++--+-++.......|..+..++.|...++.++..+...
T Consensus 368 aeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 368 AESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4455555554555555555566666666666666665555544443
No 346
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.18 E-value=1.2e+02 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 352 QKVQTLQTEATTLS-----AQVTILQVSIAELILPIAEFLIVLLP 391 (424)
Q Consensus 352 ~KVq~Lq~EN~~Ls-----~Ql~~Lqren~~L~~EN~ELK~RLqa 391 (424)
.++..|..|+..++ ++-+.|+|+.+.|..|...++..|.+
T Consensus 30 ~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 30 KERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555543 34667888888888888888777644
No 347
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.01 E-value=1.6e+02 Score=20.61 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++..|-.++..|..|...||
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444443
No 348
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.96 E-value=87 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014471 345 RYISELEQKVQTLQTEATTLS 365 (424)
Q Consensus 345 ~YieELE~KVq~Lq~EN~~Ls 365 (424)
.|+.+||.+|..|+.....|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 488899999988886665553
No 349
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.92 E-value=1.9e+02 Score=20.22 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFL 386 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK 386 (424)
|..++..|-.++..|..|...||
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444444444444444333
No 350
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.63 E-value=89 Score=29.06 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEATTLSAQ 367 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN~~Ls~Q 367 (424)
...+.+|+.+..+|+.||..|..+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 351
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.63 E-value=4.9e+02 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.006 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 364 LSAQVTILQVSIAELILPIAEFLIVLLPFLIRAI 397 (424)
Q Consensus 364 Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLEQqaq 397 (424)
|..+-..|..+...+..++.+++..+...-+.+.
T Consensus 36 Lk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~ 69 (217)
T 3aon_A 36 LKDKQDELMRQFILLIRKNNELRQAIEKETQTAM 69 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666777766655444443
No 352
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.57 E-value=2.6e+02 Score=20.60 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 348 SELEQKVQTLQTEATTLSAQVTILQVSIAELILPIAE 384 (424)
Q Consensus 348 eELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~EN~E 384 (424)
+.-|+.|+.|+.+...|..++..-+..+..+..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 353
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=20.36 E-value=5.5e+02 Score=25.62 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 014471 318 IALSDPKRAKRILANRQSAA-RSKERKMRYISELEQKVQTLQTEATTLSAQVTILQVSIAELIL------PIAEFLIVLL 390 (424)
Q Consensus 318 lAl~DpKR~RRiLkNRESAq-RSReRKK~YieELE~KVq~Lq~EN~~Ls~Ql~~Lqren~~L~~------EN~ELK~RLq 390 (424)
+.+.++...+++|-.-..-. ..-......+..+..+...|..+......++..++.+...+.. |-.+|...+.
T Consensus 158 ~~l~~~~~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~ 237 (517)
T 4ad8_A 158 VSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELS 237 (517)
T ss_dssp GTTTSHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 014471 391 PFLIRAILI 399 (424)
Q Consensus 391 aLEQqaqLr 399 (424)
.|.....+.
T Consensus 238 ~L~~~~~~~ 246 (517)
T 4ad8_A 238 RLSNLHESS 246 (517)
T ss_dssp HHHHHC---
T ss_pred HHHHHHHHH
No 354
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=20.23 E-value=4e+02 Score=22.61 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 324 KRAKRILANRQSAARSKERKMRYISELEQKVQTLQT---EATTLSAQVTILQVSIAELILPIAEFLIVLLPFL 393 (424)
Q Consensus 324 KR~RRiLkNRESAqRSReRKK~YieELE~KVq~Lq~---EN~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaLE 393 (424)
.-+||+++--.+-.+--.. .+.+++.+.. +...|+.|...|+....++-.=.+.|..-+..|+
T Consensus 15 g~vkRL~KE~~~Y~kE~~~-------q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~ 80 (116)
T 3mxz_A 15 STCKRIVKELHSYEKEVER-------EAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLK 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456666644433332222 2333444443 2355777777777666655554444444444333
No 355
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=20.13 E-value=4.1e+02 Score=22.65 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 014471 328 RILANRQSAA 337 (424)
Q Consensus 328 RiLkNRESAq 337 (424)
|+-+|+++-+
T Consensus 35 ri~~NtqaI~ 44 (114)
T 2xzr_A 35 RVTRNTQSIE 44 (114)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhHHHHH
Confidence 4555555443
No 356
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.02 E-value=3.2e+02 Score=22.43 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014471 344 MRYISELEQKVQTLQTEA----TTLSAQVTILQVSIAELILPIAEFLIVLLPF 392 (424)
Q Consensus 344 K~YieELE~KVq~Lq~EN----~~Ls~Ql~~Lqren~~L~~EN~ELK~RLqaL 392 (424)
+..|++||..+..+.... ..|..-+..+-.-...|..+..+|-.+++.+
T Consensus 25 r~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~ 77 (93)
T 3t98_B 25 RQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVL 77 (93)
T ss_dssp HHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777666644211 1244444444444445555555554444433
Done!