Query 014472
Match_columns 424
No_of_seqs 676 out of 4000
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 05:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 2E-81 4.4E-86 540.7 39.1 415 3-418 2-417 (422)
2 KOG0302 Ribosome Assembly prot 100.0 1.4E-47 3.1E-52 323.2 28.8 365 29-404 57-437 (440)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-44 5.9E-49 307.6 23.5 248 118-403 210-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1E-43 2.2E-48 300.5 24.5 251 123-411 113-445 (480)
5 KOG0271 Notchless-like WD40 re 100.0 2E-42 4.3E-47 292.7 25.5 247 121-403 153-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-43 7.1E-48 301.0 20.8 251 120-408 170-421 (459)
7 KOG0277 Peroxisomal targeting 100.0 1.9E-41 4.1E-46 272.1 23.2 298 42-404 9-308 (311)
8 KOG0263 Transcription initiati 100.0 1.3E-39 2.8E-44 299.7 25.5 268 112-409 365-653 (707)
9 KOG0284 Polyadenylation factor 100.0 4.5E-39 9.8E-44 274.5 17.5 247 122-407 135-382 (464)
10 KOG0286 G-protein beta subunit 100.0 1.9E-36 4E-41 248.1 30.3 245 125-403 97-343 (343)
11 KOG0286 G-protein beta subunit 100.0 4.8E-36 1E-40 245.7 29.9 255 122-408 52-306 (343)
12 KOG0279 G protein beta subunit 100.0 2.9E-36 6.4E-41 245.5 27.9 260 121-416 11-273 (315)
13 KOG0273 Beta-transducin family 100.0 1.6E-36 3.5E-41 263.4 26.4 248 123-411 233-488 (524)
14 KOG0315 G-protein beta subunit 100.0 8.3E-36 1.8E-40 239.0 27.7 255 118-409 32-292 (311)
15 KOG0263 Transcription initiati 100.0 3.3E-36 7.2E-41 277.3 27.8 253 115-393 441-703 (707)
16 KOG0279 G protein beta subunit 100.0 1.7E-35 3.6E-40 241.1 27.8 255 119-406 57-314 (315)
17 KOG0284 Polyadenylation factor 100.0 1.7E-37 3.6E-42 264.9 16.2 251 115-405 86-337 (464)
18 KOG0285 Pleiotropic regulator 100.0 6.4E-36 1.4E-40 251.3 21.5 252 115-408 140-392 (460)
19 KOG0645 WD40 repeat protein [G 100.0 2.1E-34 4.5E-39 233.8 27.7 252 123-405 59-311 (312)
20 KOG0265 U5 snRNP-specific prot 100.0 4.6E-35 9.9E-40 240.8 23.7 254 119-407 41-298 (338)
21 KOG0295 WD40 repeat-containing 100.0 2.8E-35 6.2E-40 247.9 21.1 254 119-410 102-369 (406)
22 KOG0277 Peroxisomal targeting 100.0 4.6E-35 1E-39 235.4 21.3 249 129-407 12-267 (311)
23 KOG0318 WD40 repeat stress pro 100.0 1.2E-32 2.5E-37 242.6 31.7 262 114-405 178-602 (603)
24 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.3E-37 223.8 28.9 256 116-407 5-263 (312)
25 KOG0276 Vesicle coat complex C 100.0 6.9E-34 1.5E-38 255.0 23.3 252 123-411 11-263 (794)
26 KOG0316 Conserved WD40 repeat- 100.0 1.4E-33 3.1E-38 224.4 22.2 246 122-409 14-261 (307)
27 KOG0282 mRNA splicing factor [ 100.0 1.2E-34 2.5E-39 252.8 16.7 253 114-403 203-503 (503)
28 KOG0273 Beta-transducin family 100.0 1.4E-32 3.1E-37 238.9 27.0 257 108-405 251-523 (524)
29 KOG0319 WD40-repeat-containing 100.0 5.1E-34 1.1E-38 260.5 18.9 260 121-409 361-623 (775)
30 KOG0291 WD40-repeat-containing 100.0 2.6E-32 5.7E-37 249.8 30.0 269 117-410 342-617 (893)
31 KOG0266 WD40 repeat-containing 100.0 2.6E-32 5.7E-37 257.4 29.8 248 124-408 158-412 (456)
32 KOG0319 WD40-repeat-containing 100.0 1.1E-32 2.4E-37 251.8 25.7 258 122-411 320-583 (775)
33 KOG0281 Beta-TrCP (transducin 100.0 9.5E-34 2.1E-38 237.5 16.5 251 120-410 232-482 (499)
34 KOG0295 WD40 repeat-containing 100.0 6E-33 1.3E-37 233.9 20.4 246 121-404 146-405 (406)
35 KOG0296 Angio-associated migra 100.0 1.8E-31 3.8E-36 225.2 28.8 247 118-405 57-398 (399)
36 KOG0315 G-protein beta subunit 100.0 8.3E-32 1.8E-36 216.1 24.9 245 136-414 8-253 (311)
37 KOG0292 Vesicle coat complex C 100.0 7.7E-33 1.7E-37 257.2 21.8 247 124-407 8-282 (1202)
38 KOG0281 Beta-TrCP (transducin 100.0 5E-34 1.1E-38 239.1 12.5 236 124-408 196-431 (499)
39 PLN00181 protein SPA1-RELATED; 100.0 4.7E-31 1E-35 266.9 36.7 260 123-407 481-740 (793)
40 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.4E-35 264.3 38.8 259 122-404 529-792 (793)
41 KOG0291 WD40-repeat-containing 100.0 8.7E-31 1.9E-35 239.9 33.1 321 34-407 89-510 (893)
42 cd00200 WD40 WD40 domain, foun 100.0 4.4E-30 9.4E-35 229.5 37.0 280 42-403 10-289 (289)
43 KOG0265 U5 snRNP-specific prot 100.0 3.8E-31 8.3E-36 217.8 27.2 241 123-402 88-335 (338)
44 KOG0643 Translation initiation 100.0 2.4E-31 5.2E-36 215.6 24.0 271 119-411 4-323 (327)
45 KOG0293 WD40 repeat-containing 100.0 1E-31 2.2E-36 230.0 21.4 255 122-407 221-515 (519)
46 KOG0266 WD40 repeat-containing 100.0 3.7E-31 8E-36 249.6 27.4 247 122-405 200-454 (456)
47 KOG0283 WD40 repeat-containing 100.0 4.5E-31 9.8E-36 245.5 26.0 260 117-407 257-578 (712)
48 KOG0313 Microtubule binding pr 100.0 4.4E-31 9.6E-36 223.9 23.5 258 119-405 138-418 (423)
49 cd00200 WD40 WD40 domain, foun 100.0 5.8E-30 1.2E-34 228.7 32.2 246 123-408 7-252 (289)
50 KOG0264 Nucleosome remodeling 100.0 1.2E-30 2.6E-35 226.5 26.5 221 120-349 172-405 (422)
51 KOG0285 Pleiotropic regulator 100.0 3.3E-30 7.1E-35 217.0 27.8 263 113-410 182-444 (460)
52 PTZ00421 coronin; Provisional 100.0 3.9E-30 8.4E-35 241.7 31.6 266 124-409 19-294 (493)
53 KOG0305 Anaphase promoting com 100.0 1.2E-30 2.7E-35 236.5 26.3 257 110-407 203-463 (484)
54 KOG0310 Conserved WD40 repeat- 100.0 2.7E-31 5.8E-36 232.2 20.7 246 123-406 24-269 (487)
55 KOG0313 Microtubule binding pr 100.0 1.2E-30 2.6E-35 221.3 23.4 256 120-408 100-379 (423)
56 KOG0292 Vesicle coat complex C 100.0 1.1E-30 2.5E-35 242.8 24.8 249 121-406 47-322 (1202)
57 KOG0268 Sof1-like rRNA process 100.0 7.9E-32 1.7E-36 227.1 15.4 254 120-406 61-346 (433)
58 KOG0270 WD40 repeat-containing 100.0 4E-30 8.7E-35 222.3 25.9 275 113-408 161-452 (463)
59 PTZ00420 coronin; Provisional 100.0 3.2E-29 7E-34 236.5 33.9 236 144-408 50-296 (568)
60 KOG0318 WD40 repeat stress pro 100.0 5.8E-30 1.3E-34 225.6 26.5 264 122-410 56-355 (603)
61 KOG0772 Uncharacterized conser 100.0 1.2E-30 2.7E-35 229.3 22.2 270 118-406 160-489 (641)
62 KOG0640 mRNA cleavage stimulat 100.0 1.4E-30 3E-35 215.4 20.8 280 114-404 101-425 (430)
63 PTZ00421 coronin; Provisional 100.0 3.8E-29 8.3E-34 235.0 33.4 256 121-407 71-333 (493)
64 KOG0276 Vesicle coat complex C 100.0 2.3E-30 4.9E-35 232.5 22.7 238 125-399 55-293 (794)
65 KOG0641 WD40 repeat protein [G 100.0 1.3E-28 2.9E-33 195.1 29.6 275 112-405 19-349 (350)
66 KOG0290 Conserved WD40 repeat- 100.0 1.4E-29 3E-34 207.8 24.7 321 35-403 38-363 (364)
67 KOG0269 WD40 repeat-containing 100.0 4.1E-31 8.8E-36 242.8 17.1 251 126-406 88-341 (839)
68 KOG1332 Vesicle coat complex C 100.0 6.8E-30 1.5E-34 204.6 19.4 260 123-407 9-288 (299)
69 KOG1007 WD repeat protein TSSC 100.0 5.5E-29 1.2E-33 204.1 24.8 314 63-407 26-363 (370)
70 KOG0306 WD40-repeat-containing 100.0 3.3E-28 7.2E-33 223.0 30.1 256 118-409 406-668 (888)
71 KOG0310 Conserved WD40 repeat- 100.0 6.5E-29 1.4E-33 217.4 23.3 241 123-402 66-306 (487)
72 KOG0278 Serine/threonine kinas 100.0 2.1E-29 4.6E-34 202.4 16.2 259 122-407 11-299 (334)
73 KOG0973 Histone transcription 100.0 2.9E-28 6.3E-33 232.5 26.5 268 116-409 60-359 (942)
74 PTZ00420 coronin; Provisional 100.0 3.3E-27 7.1E-32 223.0 32.5 240 119-386 68-318 (568)
75 KOG1407 WD40 repeat protein [F 100.0 4.4E-28 9.5E-33 196.1 22.6 251 120-409 15-265 (313)
76 KOG0275 Conserved WD40 repeat- 100.0 1.5E-28 3.3E-33 204.6 19.4 259 121-411 209-473 (508)
77 KOG0274 Cdc4 and related F-box 100.0 1.3E-27 2.7E-32 225.0 26.8 252 112-411 236-488 (537)
78 KOG0269 WD40 repeat-containing 100.0 1.7E-28 3.6E-33 225.7 20.1 257 125-409 39-300 (839)
79 KOG0300 WD40 repeat-containing 100.0 4.2E-28 9.1E-33 201.4 20.4 264 113-410 135-433 (481)
80 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-26 3.9E-31 192.1 29.7 245 124-409 13-266 (311)
81 KOG4283 Transcription-coupled 100.0 7.8E-28 1.7E-32 197.9 21.3 270 123-404 41-364 (397)
82 KOG0308 Conserved WD40 repeat- 100.0 3.3E-28 7.2E-33 219.7 19.8 257 124-407 20-287 (735)
83 KOG2445 Nuclear pore complex c 100.0 1.1E-26 2.5E-31 192.2 27.0 276 123-407 11-320 (361)
84 KOG0282 mRNA splicing factor [ 100.0 9.7E-29 2.1E-33 215.9 15.4 228 169-409 205-466 (503)
85 KOG0294 WD40 repeat-containing 100.0 6.7E-27 1.5E-31 194.1 24.7 244 121-409 39-285 (362)
86 KOG0307 Vesicle coat complex C 100.0 2.4E-28 5.1E-33 234.2 16.4 267 117-408 56-330 (1049)
87 KOG0300 WD40 repeat-containing 100.0 2E-27 4.4E-32 197.4 19.6 265 118-407 183-478 (481)
88 KOG0316 Conserved WD40 repeat- 100.0 1.3E-26 2.8E-31 184.9 22.7 242 119-403 53-297 (307)
89 KOG0302 Ribosome Assembly prot 100.0 3.9E-27 8.4E-32 199.9 20.8 215 118-346 204-436 (440)
90 KOG0274 Cdc4 and related F-box 100.0 6E-27 1.3E-31 220.5 24.0 241 124-412 207-448 (537)
91 KOG0275 Conserved WD40 repeat- 100.0 1.7E-27 3.7E-32 198.4 17.9 245 122-404 260-508 (508)
92 KOG0289 mRNA splicing factor [ 100.0 2.6E-26 5.7E-31 198.2 25.4 245 122-404 258-505 (506)
93 KOG1407 WD40 repeat protein [F 100.0 1.2E-25 2.7E-30 181.9 27.6 242 122-405 61-311 (313)
94 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.5E-31 201.8 22.7 270 118-407 135-412 (479)
95 KOG0270 WD40 repeat-containing 100.0 7E-27 1.5E-31 202.4 20.7 280 34-351 164-452 (463)
96 KOG0289 mRNA splicing factor [ 100.0 3.7E-26 8.1E-31 197.2 24.4 245 126-409 220-466 (506)
97 KOG0647 mRNA export protein (c 100.0 4.3E-26 9.2E-31 188.3 23.6 247 124-407 26-283 (347)
98 KOG1408 WD40 repeat protein [F 100.0 1.6E-26 3.5E-31 210.9 22.1 337 29-407 360-715 (1080)
99 KOG0288 WD40 repeat protein Ti 100.0 1.1E-27 2.5E-32 205.3 12.9 256 123-416 173-428 (459)
100 KOG0299 U3 snoRNP-associated p 99.9 5.6E-26 1.2E-30 197.6 22.9 247 123-407 200-458 (479)
101 KOG0301 Phospholipase A2-activ 99.9 1.6E-26 3.4E-31 210.3 19.8 245 121-415 53-298 (745)
102 KOG0288 WD40 repeat protein Ti 99.9 2.4E-26 5.2E-31 197.3 18.6 239 123-403 217-459 (459)
103 KOG0306 WD40-repeat-containing 99.9 1.1E-25 2.4E-30 206.5 23.9 304 32-406 311-623 (888)
104 KOG0293 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 192.9 22.4 218 115-349 258-514 (519)
105 KOG0973 Histone transcription 99.9 1.5E-25 3.2E-30 214.2 24.1 262 122-406 9-313 (942)
106 KOG0301 Phospholipase A2-activ 99.9 1.8E-25 3.9E-30 203.6 22.6 239 121-405 10-249 (745)
107 KOG0296 Angio-associated migra 99.9 1.6E-24 3.4E-29 183.5 26.2 208 118-348 99-398 (399)
108 KOG4328 WD40 protein [Function 99.9 4.8E-25 1E-29 191.7 23.1 263 123-408 184-453 (498)
109 KOG4283 Transcription-coupled 99.9 2E-25 4.2E-30 183.8 19.3 230 174-409 39-280 (397)
110 KOG0283 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 208.7 20.4 215 173-407 261-534 (712)
111 KOG0321 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 196.8 24.4 269 117-410 92-396 (720)
112 KOG1036 Mitotic spindle checkp 99.9 1.9E-24 4.1E-29 179.3 23.5 243 124-407 12-264 (323)
113 KOG0646 WD40 repeat protein [G 99.9 4.1E-25 8.9E-30 192.6 20.5 261 117-409 73-354 (476)
114 KOG0772 Uncharacterized conser 99.9 1E-25 2.2E-30 198.5 16.9 220 171-407 160-396 (641)
115 KOG1446 Histone H3 (Lys4) meth 99.9 7.4E-23 1.6E-27 170.6 32.7 244 124-409 55-307 (311)
116 KOG0305 Anaphase promoting com 99.9 1E-24 2.2E-29 198.1 23.5 237 129-407 181-421 (484)
117 KOG0643 Translation initiation 99.9 2.2E-24 4.7E-29 175.3 22.0 209 173-408 5-223 (327)
118 KOG0267 Microtubule severing p 99.9 2E-26 4.2E-31 210.6 11.4 237 121-397 24-260 (825)
119 KOG0290 Conserved WD40 repeat- 99.9 3.6E-24 7.8E-29 176.1 23.3 273 115-409 34-322 (364)
120 KOG0307 Vesicle coat complex C 99.9 4.4E-26 9.6E-31 218.7 14.0 263 129-411 10-290 (1049)
121 KOG1587 Cytoplasmic dynein int 99.9 3E-23 6.4E-28 194.0 31.9 281 116-414 233-525 (555)
122 KOG0640 mRNA cleavage stimulat 99.9 7.3E-25 1.6E-29 181.7 18.1 214 116-348 163-426 (430)
123 KOG0641 WD40 repeat protein [G 99.9 9E-23 2E-27 162.1 27.7 222 115-348 79-349 (350)
124 KOG1332 Vesicle coat complex C 99.9 1.2E-23 2.5E-28 169.0 21.5 219 117-349 48-287 (299)
125 KOG0278 Serine/threonine kinas 99.9 7E-25 1.5E-29 176.5 13.7 206 119-351 94-300 (334)
126 KOG0268 Sof1-like rRNA process 99.9 4E-25 8.6E-30 186.8 12.6 214 171-410 59-307 (433)
127 KOG0308 Conserved WD40 repeat- 99.9 3E-24 6.6E-29 194.3 18.5 257 120-407 68-329 (735)
128 KOG0646 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 182.4 22.5 247 139-407 52-309 (476)
129 KOG1273 WD40 repeat protein [G 99.9 1.6E-23 3.4E-28 174.2 20.0 247 119-406 18-323 (405)
130 KOG1274 WD40 repeat protein [G 99.9 9.5E-23 2.1E-27 191.5 27.2 245 121-406 9-263 (933)
131 KOG0639 Transducin-like enhanc 99.9 4E-24 8.7E-29 188.0 16.7 254 116-407 410-665 (705)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-22 6.4E-27 181.0 29.7 251 121-410 26-284 (300)
133 KOG1539 WD repeat protein [Gen 99.9 3.2E-23 7E-28 192.6 23.1 263 118-411 236-612 (910)
134 KOG0267 Microtubule severing p 99.9 2.7E-25 5.9E-30 203.2 9.1 225 140-409 6-230 (825)
135 KOG1036 Mitotic spindle checkp 99.9 1.2E-22 2.6E-27 168.6 23.3 235 118-394 47-293 (323)
136 KOG0321 WD40 repeat-containing 99.9 1.8E-23 3.9E-28 188.9 19.8 255 130-408 54-350 (720)
137 KOG0647 mRNA export protein (c 99.9 3.4E-22 7.4E-27 165.4 24.9 239 119-396 66-315 (347)
138 KOG2919 Guanine nucleotide-bin 99.9 3.7E-22 7.9E-27 166.7 24.6 250 116-394 95-359 (406)
139 KOG4328 WD40 protein [Function 99.9 2.9E-23 6.3E-28 180.7 18.2 220 171-405 179-399 (498)
140 KOG2096 WD40 repeat protein [G 99.9 3.3E-22 7.2E-27 166.6 23.5 271 121-407 82-404 (420)
141 KOG1188 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 172.0 19.6 248 139-404 41-345 (376)
142 KOG2919 Guanine nucleotide-bin 99.9 1.5E-22 3.2E-27 169.0 21.2 259 126-406 50-328 (406)
143 KOG0650 WD40 repeat nucleolar 99.9 6.9E-23 1.5E-27 183.8 20.5 262 118-402 393-732 (733)
144 KOG4378 Nuclear protein COP1 [ 99.9 3E-23 6.5E-28 182.3 17.6 222 127-386 84-305 (673)
145 KOG1445 Tumor-specific antigen 99.9 1.1E-22 2.3E-27 183.8 18.8 120 274-408 628-753 (1012)
146 KOG2106 Uncharacterized conser 99.9 2.4E-21 5.2E-26 170.7 26.8 240 126-405 247-521 (626)
147 KOG2048 WD40 repeat protein [G 99.9 3.4E-21 7.3E-26 175.5 27.2 253 117-408 16-278 (691)
148 KOG0639 Transducin-like enhanc 99.9 1.4E-22 3E-27 178.3 16.9 240 124-404 464-703 (705)
149 KOG0294 WD40 repeat-containing 99.9 2.2E-21 4.7E-26 161.6 21.9 233 140-407 3-239 (362)
150 KOG1063 RNA polymerase II elon 99.9 5.1E-21 1.1E-25 174.7 26.2 260 122-407 264-650 (764)
151 KOG0303 Actin-binding protein 99.9 1.8E-21 3.9E-26 166.6 21.8 217 173-408 76-297 (472)
152 KOG2055 WD40 repeat protein [G 99.9 4.1E-21 8.9E-26 167.5 24.0 257 126-405 214-512 (514)
153 KOG4227 WD40 repeat protein [G 99.9 3.9E-21 8.4E-26 164.5 22.4 272 120-407 51-389 (609)
154 KOG2096 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 161.8 19.6 221 173-407 81-310 (420)
155 KOG1034 Transcriptional repres 99.9 6.9E-22 1.5E-26 165.4 16.7 253 124-405 88-383 (385)
156 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-21 3.1E-26 171.8 19.3 246 128-407 37-282 (673)
157 KOG0303 Actin-binding protein 99.9 1.7E-20 3.6E-25 160.8 24.8 214 122-350 78-296 (472)
158 KOG2445 Nuclear pore complex c 99.9 2.3E-20 4.9E-25 155.1 24.8 235 113-350 46-320 (361)
159 KOG1408 WD40 repeat protein [F 99.9 4.7E-21 1E-25 175.5 22.7 258 130-411 329-677 (1080)
160 KOG1034 Transcriptional repres 99.9 1.7E-21 3.6E-26 163.1 17.6 270 120-408 33-340 (385)
161 KOG1007 WD repeat protein TSSC 99.9 3.4E-21 7.4E-26 158.5 18.8 213 124-349 122-362 (370)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-19 2.8E-24 163.7 29.1 237 139-409 2-241 (300)
163 KOG2106 Uncharacterized conser 99.9 2.2E-19 4.7E-24 158.5 28.9 244 124-408 199-480 (626)
164 KOG0642 Cell-cycle nuclear pro 99.9 3.2E-21 6.9E-26 172.3 17.2 267 120-410 289-566 (577)
165 KOG1009 Chromatin assembly com 99.9 8E-20 1.7E-24 157.2 24.5 291 74-408 32-375 (434)
166 KOG1587 Cytoplasmic dynein int 99.9 2.2E-19 4.7E-24 168.3 26.1 242 148-413 222-480 (555)
167 KOG1274 WD40 repeat protein [G 99.8 4.3E-19 9.3E-24 167.2 25.1 222 124-387 55-283 (933)
168 KOG2048 WD40 repeat protein [G 99.8 2.8E-18 6E-23 156.8 28.7 248 123-406 67-320 (691)
169 KOG0322 G-protein beta subunit 99.8 5.7E-20 1.2E-24 149.6 15.0 251 123-404 12-322 (323)
170 KOG1188 WD40 repeat protein [G 99.8 1.5E-19 3.2E-24 152.4 18.0 197 193-408 42-245 (376)
171 KOG1517 Guanine nucleotide bin 99.8 2.9E-18 6.2E-23 163.8 28.4 267 126-409 1110-1385(1387)
172 KOG1063 RNA polymerase II elon 99.8 3.2E-19 6.9E-24 163.1 21.2 276 115-409 180-606 (764)
173 PRK11028 6-phosphogluconolacto 99.8 1.7E-17 3.6E-22 151.8 32.0 268 114-405 23-304 (330)
174 KOG0649 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 139.5 21.6 247 127-406 12-275 (325)
175 KOG1539 WD repeat protein [Gen 99.8 4.6E-18 9.9E-23 158.7 26.5 265 115-408 104-368 (910)
176 KOG1445 Tumor-specific antigen 99.8 3.5E-19 7.5E-24 161.4 18.1 241 144-406 599-845 (1012)
177 KOG1523 Actin-related protein 99.8 7.2E-18 1.6E-22 141.1 21.5 213 124-351 9-239 (361)
178 KOG1524 WD40 repeat-containing 99.8 1.1E-18 2.5E-23 155.2 17.7 213 139-407 76-288 (737)
179 PF12265 CAF1C_H4-bd: Histone- 99.8 6.5E-21 1.4E-25 129.8 2.5 72 18-89 1-73 (74)
180 KOG1310 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 155.5 16.5 219 122-352 47-307 (758)
181 KOG1310 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 154.4 17.4 229 172-407 44-305 (758)
182 KOG1538 Uncharacterized conser 99.8 8.7E-18 1.9E-22 153.3 22.3 247 127-407 14-295 (1081)
183 KOG2110 Uncharacterized conser 99.8 1.2E-16 2.6E-21 136.4 27.0 242 127-411 7-254 (391)
184 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-16 4.5E-21 149.4 32.1 254 120-409 60-318 (466)
185 KOG0644 Uncharacterized conser 99.8 2.1E-19 4.5E-24 167.5 10.0 247 120-411 185-432 (1113)
186 KOG1273 WD40 repeat protein [G 99.8 9.2E-18 2E-22 140.1 18.7 199 181-407 26-228 (405)
187 KOG1334 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 151.3 16.3 271 122-409 139-428 (559)
188 KOG0771 Prolactin regulatory e 99.8 3.3E-17 7.1E-22 142.2 21.6 198 182-406 148-355 (398)
189 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 5E-21 148.6 27.7 267 123-412 203-546 (792)
190 KOG0280 Uncharacterized conser 99.8 5.7E-17 1.2E-21 134.2 20.6 260 126-407 70-335 (339)
191 KOG1517 Guanine nucleotide bin 99.8 7.4E-17 1.6E-21 154.3 23.7 258 126-413 1065-1341(1387)
192 KOG1009 Chromatin assembly com 99.8 6E-18 1.3E-22 145.8 14.3 213 177-394 12-249 (434)
193 KOG1240 Protein kinase contain 99.8 8.4E-17 1.8E-21 156.2 23.8 285 116-409 1039-1338(1431)
194 KOG2055 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 141.8 20.5 206 178-407 213-419 (514)
195 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-15 5.9E-20 141.8 32.4 247 126-408 110-362 (466)
196 PRK11028 6-phosphogluconolacto 99.8 1.9E-15 4.2E-20 138.2 29.2 243 140-406 4-259 (330)
197 KOG0649 WD40 repeat protein [G 99.8 8.3E-16 1.8E-20 124.1 22.8 252 112-403 49-314 (325)
198 KOG1523 Actin-related protein 99.8 1.9E-16 4.1E-21 132.7 19.4 226 174-407 6-238 (361)
199 KOG0771 Prolactin regulatory e 99.8 4.1E-17 8.8E-22 141.6 15.8 202 129-349 148-355 (398)
200 KOG2321 WD40 repeat protein [G 99.7 9.5E-17 2.1E-21 144.2 18.0 266 114-405 40-343 (703)
201 KOG0650 WD40 repeat nucleolar 99.7 6.7E-17 1.4E-21 145.8 15.9 204 118-345 514-732 (733)
202 KOG2394 WD40 protein DMR-N9 [G 99.7 4.9E-16 1.1E-20 138.7 20.7 254 130-411 128-458 (636)
203 KOG1524 WD40 repeat-containing 99.7 1.2E-16 2.5E-21 142.6 16.1 248 118-407 7-257 (737)
204 KOG3881 Uncharacterized conser 99.7 1.3E-15 2.8E-20 131.0 21.2 256 124-407 54-322 (412)
205 KOG2139 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 127.7 22.4 247 125-392 98-363 (445)
206 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-16 5.6E-21 141.2 16.5 221 117-350 336-563 (577)
207 PRK01742 tolB translocation pr 99.7 2.8E-15 6E-20 141.5 24.0 213 147-404 183-400 (429)
208 PF10282 Lactonase: Lactonase, 99.7 1.2E-13 2.5E-18 126.6 33.0 304 66-410 2-329 (345)
209 PRK01742 tolB translocation pr 99.7 5E-15 1.1E-19 139.7 23.4 222 122-385 200-426 (429)
210 KOG0322 G-protein beta subunit 99.7 8E-16 1.7E-20 125.6 14.2 219 123-347 54-322 (323)
211 KOG2110 Uncharacterized conser 99.7 2.4E-13 5.3E-18 116.4 28.4 197 128-351 49-251 (391)
212 KOG1272 WD40-repeat-containing 99.7 3.7E-16 8E-21 137.1 11.4 231 127-404 131-361 (545)
213 KOG2111 Uncharacterized conser 99.7 7.6E-14 1.7E-18 117.2 24.5 238 129-410 9-261 (346)
214 KOG2139 WD40 repeat protein [G 99.7 1.1E-13 2.5E-18 118.0 25.8 255 124-406 139-432 (445)
215 KOG4227 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 127.0 16.6 175 171-351 49-228 (609)
216 COG2706 3-carboxymuconate cycl 99.7 2.9E-12 6.2E-17 110.2 32.7 298 64-406 3-322 (346)
217 PRK05137 tolB translocation pr 99.7 2.6E-13 5.7E-18 128.5 29.1 221 148-409 182-416 (435)
218 PRK03629 tolB translocation pr 99.6 5.5E-13 1.2E-17 125.6 30.1 219 148-408 179-409 (429)
219 KOG1538 Uncharacterized conser 99.6 7.1E-15 1.5E-19 134.6 15.9 203 180-414 14-220 (1081)
220 PF08662 eIF2A: Eukaryotic tra 99.6 3.5E-14 7.5E-19 118.1 18.7 160 231-413 9-187 (194)
221 PRK02889 tolB translocation pr 99.6 2.4E-13 5.1E-18 128.2 26.2 218 148-404 176-402 (427)
222 PRK04922 tolB translocation pr 99.6 2.4E-13 5.3E-18 128.6 25.6 219 148-407 184-413 (433)
223 KOG1963 WD40 repeat protein [G 99.6 2.4E-13 5.1E-18 128.6 24.4 259 129-408 20-378 (792)
224 KOG0309 Conserved WD40 repeat- 99.6 7.4E-15 1.6E-19 135.9 14.1 272 121-410 20-344 (1081)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 1.4E-14 3E-19 129.5 15.4 195 141-349 188-453 (636)
226 KOG3881 Uncharacterized conser 99.6 8.1E-14 1.8E-18 120.1 19.0 212 125-350 105-322 (412)
227 PRK04922 tolB translocation pr 99.6 3.4E-13 7.4E-18 127.5 25.3 221 123-384 201-432 (433)
228 KOG0280 Uncharacterized conser 99.6 5.1E-14 1.1E-18 117.0 16.4 240 147-410 45-289 (339)
229 KOG0644 Uncharacterized conser 99.6 3.5E-15 7.6E-20 139.7 10.6 242 122-407 229-470 (1113)
230 KOG1334 WD40 repeat protein [G 99.6 1.8E-14 4E-19 127.3 13.9 259 122-407 182-468 (559)
231 PRK03629 tolB translocation pr 99.6 7.9E-13 1.7E-17 124.5 26.1 222 123-385 196-428 (429)
232 KOG1354 Serine/threonine prote 99.6 2.2E-13 4.7E-18 115.6 19.6 265 123-411 23-365 (433)
233 PRK02889 tolB translocation pr 99.6 4.6E-13 1E-17 126.2 24.2 227 122-385 192-425 (427)
234 PRK05137 tolB translocation pr 99.6 4.2E-12 9.2E-17 120.3 30.8 201 123-349 199-413 (435)
235 KOG1272 WD40-repeat-containing 99.6 5.6E-15 1.2E-19 129.7 9.8 244 117-401 162-405 (545)
236 KOG2111 Uncharacterized conser 99.6 2.9E-12 6.3E-17 107.8 25.1 179 148-351 75-259 (346)
237 PF08662 eIF2A: Eukaryotic tra 99.6 2.4E-13 5.3E-18 113.0 18.3 153 182-349 9-180 (194)
238 KOG1240 Protein kinase contain 99.6 5E-13 1.1E-17 130.5 21.4 225 169-409 1039-1277(1431)
239 KOG4497 Uncharacterized conser 99.6 3.5E-14 7.6E-19 119.7 11.6 221 131-401 14-236 (447)
240 KOG1409 Uncharacterized conser 99.5 1.1E-12 2.3E-17 111.5 18.6 217 121-352 20-274 (404)
241 KOG1354 Serine/threonine prote 99.5 2.7E-13 5.8E-18 115.1 14.7 290 107-403 66-432 (433)
242 KOG4497 Uncharacterized conser 99.5 2.8E-12 6E-17 108.4 20.0 247 122-408 45-394 (447)
243 PF02239 Cytochrom_D1: Cytochr 99.5 1.5E-11 3.2E-16 112.6 26.4 265 116-409 26-351 (369)
244 PRK01029 tolB translocation pr 99.5 3.6E-11 7.9E-16 112.9 28.9 230 148-410 165-408 (428)
245 PRK04792 tolB translocation pr 99.5 1.3E-11 2.8E-16 116.9 26.0 223 123-385 215-447 (448)
246 TIGR02800 propeller_TolB tol-p 99.5 3.3E-11 7.3E-16 114.1 28.3 217 148-406 170-398 (417)
247 PRK04792 tolB translocation pr 99.5 5.8E-11 1.3E-15 112.4 29.6 219 149-407 199-427 (448)
248 KOG1064 RAVE (regulator of V-A 99.5 4.3E-13 9.2E-18 135.3 14.2 193 123-352 2206-2402(2439)
249 PRK00178 tolB translocation pr 99.5 3.8E-11 8.3E-16 113.9 26.3 224 122-385 195-428 (430)
250 PRK00178 tolB translocation pr 99.5 5E-11 1.1E-15 113.1 26.9 218 149-407 180-408 (430)
251 PF02239 Cytochrom_D1: Cytochr 99.5 3.2E-11 7E-16 110.4 24.3 246 140-407 8-304 (369)
252 KOG4547 WD40 repeat-containing 99.4 2.6E-11 5.6E-16 110.4 21.7 199 135-352 2-224 (541)
253 TIGR02800 propeller_TolB tol-p 99.4 8.3E-11 1.8E-15 111.4 26.0 198 123-347 187-396 (417)
254 KOG4547 WD40 repeat-containing 99.4 9.8E-12 2.1E-16 113.0 18.0 195 189-406 3-221 (541)
255 PRK01029 tolB translocation pr 99.4 1.9E-10 4.2E-15 108.0 26.4 209 124-350 183-405 (428)
256 KOG0974 WD-repeat protein WDR6 99.4 1.6E-11 3.4E-16 118.5 18.6 194 193-412 101-295 (967)
257 PLN02919 haloacid dehalogenase 99.4 1.1E-09 2.3E-14 113.4 31.2 257 129-409 571-892 (1057)
258 KOG2321 WD40 repeat protein [G 99.4 3.6E-11 7.7E-16 108.9 17.8 206 126-351 134-346 (703)
259 KOG2315 Predicted translation 99.4 1.9E-10 4.1E-15 104.2 21.0 242 129-411 129-396 (566)
260 COG5170 CDC55 Serine/threonine 99.4 3.9E-11 8.4E-16 100.9 15.1 262 124-409 25-371 (460)
261 PF10282 Lactonase: Lactonase, 99.3 1.9E-09 4.1E-14 98.9 27.2 244 142-405 3-275 (345)
262 KOG4532 WD40-like repeat conta 99.3 4.5E-10 9.8E-15 92.7 20.2 240 139-407 85-333 (344)
263 KOG4714 Nucleoporin [Nuclear s 99.3 1.3E-10 2.9E-15 95.3 15.6 209 128-349 39-255 (319)
264 KOG0309 Conserved WD40 repeat- 99.3 3.1E-11 6.7E-16 112.4 13.3 214 119-349 108-340 (1081)
265 KOG2315 Predicted translation 99.3 7.7E-10 1.7E-14 100.3 21.2 205 121-349 161-391 (566)
266 KOG0974 WD-repeat protein WDR6 99.2 4.2E-10 9.1E-15 108.9 17.1 191 133-351 95-291 (967)
267 KOG1409 Uncharacterized conser 99.2 8.5E-10 1.8E-14 94.2 16.6 224 170-416 16-281 (404)
268 KOG2041 WD40 repeat protein [G 99.2 7.1E-09 1.5E-13 96.8 23.5 256 123-406 12-338 (1189)
269 COG2706 3-carboxymuconate cycl 99.2 6.3E-08 1.4E-12 83.9 27.6 244 147-407 15-276 (346)
270 KOG1064 RAVE (regulator of V-A 99.2 1.1E-10 2.4E-15 118.4 11.4 192 177-408 2207-2401(2439)
271 KOG4190 Uncharacterized conser 99.2 2.2E-10 4.7E-15 103.6 11.6 221 114-349 724-949 (1034)
272 KOG1912 WD40 repeat protein [G 99.2 9.4E-09 2E-13 96.8 21.6 246 124-406 14-305 (1062)
273 KOG1008 Uncharacterized conser 99.2 3.6E-11 7.9E-16 110.4 5.5 211 126-351 57-278 (783)
274 PRK04043 tolB translocation pr 99.1 1.3E-07 2.9E-12 88.4 27.9 197 180-407 189-402 (419)
275 PRK04043 tolB translocation pr 99.1 8.3E-08 1.8E-12 89.8 26.5 196 126-348 188-400 (419)
276 PF15492 Nbas_N: Neuroblastoma 99.1 6.3E-07 1.4E-11 75.5 27.9 239 131-409 3-263 (282)
277 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.6E-07 3.5E-12 84.4 25.4 251 117-410 38-335 (352)
278 KOG4714 Nucleoporin [Nuclear s 99.1 7.8E-10 1.7E-14 90.9 9.6 208 181-408 39-257 (319)
279 KOG2314 Translation initiation 99.1 3.6E-08 7.9E-13 89.5 21.0 248 128-409 213-577 (698)
280 COG5170 CDC55 Serine/threonine 99.1 3.9E-09 8.5E-14 89.0 13.4 222 178-407 26-311 (460)
281 PF08450 SGL: SMP-30/Gluconola 99.0 2.1E-06 4.5E-11 75.0 29.9 224 130-394 4-245 (246)
282 PLN02919 haloacid dehalogenase 99.0 1.7E-07 3.8E-12 97.2 26.4 209 127-351 625-891 (1057)
283 KOG4532 WD40-like repeat conta 99.0 1.2E-07 2.5E-12 78.7 20.0 196 193-407 86-284 (344)
284 KOG1645 RING-finger-containing 99.0 3.3E-08 7.1E-13 86.4 16.4 222 169-411 184-425 (463)
285 PF04762 IKI3: IKI3 family; I 99.0 3.6E-07 7.8E-12 93.2 25.8 278 113-407 110-458 (928)
286 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.3E-14 96.9 9.1 217 171-410 728-953 (1034)
287 PF15492 Nbas_N: Neuroblastoma 99.0 2.8E-07 6.1E-12 77.6 20.6 202 128-352 46-263 (282)
288 KOG2695 WD40 repeat protein [G 98.9 3E-09 6.5E-14 91.0 8.3 146 245-409 229-380 (425)
289 COG4946 Uncharacterized protei 98.9 1.2E-06 2.7E-11 78.4 24.0 196 134-350 275-479 (668)
290 COG4946 Uncharacterized protei 98.9 1E-06 2.3E-11 78.9 23.0 260 120-406 354-655 (668)
291 KOG1645 RING-finger-containing 98.9 1.8E-07 3.9E-12 81.9 17.7 248 123-406 191-462 (463)
292 KOG1912 WD40 repeat protein [G 98.9 2.1E-07 4.5E-12 88.0 19.0 272 119-410 48-369 (1062)
293 KOG3914 WD repeat protein WDR4 98.9 5E-08 1.1E-12 85.3 13.7 159 184-354 68-229 (390)
294 PF04762 IKI3: IKI3 family; I 98.9 3E-06 6.4E-11 86.7 28.6 251 124-405 74-379 (928)
295 KOG2695 WD40 repeat protein [G 98.9 1.5E-08 3.4E-13 86.7 9.7 153 145-315 231-386 (425)
296 KOG3914 WD repeat protein WDR4 98.9 8.5E-08 1.9E-12 83.9 14.0 158 232-410 67-228 (390)
297 KOG2114 Vacuolar assembly/sort 98.8 1.4E-06 3E-11 83.6 23.0 202 132-350 30-245 (933)
298 KOG0882 Cyclophilin-related pe 98.8 1.1E-07 2.4E-12 84.3 14.5 270 120-409 4-309 (558)
299 KOG1275 PAB-dependent poly(A) 98.8 3.2E-07 6.8E-12 88.4 17.3 188 191-406 147-343 (1118)
300 KOG2041 WD40 repeat protein [G 98.8 7E-08 1.5E-12 90.3 12.4 164 178-348 14-186 (1189)
301 COG5354 Uncharacterized protei 98.8 1.6E-06 3.5E-11 78.4 19.8 243 125-409 32-310 (561)
302 KOG1275 PAB-dependent poly(A) 98.8 2.9E-07 6.3E-12 88.6 15.9 182 139-347 148-341 (1118)
303 KOG2066 Vacuolar assembly/sort 98.8 6.2E-07 1.4E-11 85.3 17.3 187 124-349 38-234 (846)
304 KOG0882 Cyclophilin-related pe 98.7 2.1E-07 4.6E-12 82.6 12.6 227 177-415 8-241 (558)
305 KOG1008 Uncharacterized conser 98.7 4.8E-09 1.1E-13 96.8 2.4 212 179-407 57-277 (783)
306 PF07433 DUF1513: Protein of u 98.7 3.7E-05 8E-10 67.0 25.7 233 126-395 5-276 (305)
307 COG5354 Uncharacterized protei 98.7 7.8E-06 1.7E-10 74.1 21.9 206 121-350 68-308 (561)
308 TIGR02658 TTQ_MADH_Hv methylam 98.6 1.8E-05 4E-10 71.3 22.9 203 130-351 109-333 (352)
309 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.8E-12 56.1 5.7 38 365-403 2-39 (39)
310 KOG2114 Vacuolar assembly/sort 98.6 8.5E-06 1.9E-10 78.4 20.1 197 185-407 30-245 (933)
311 PF00400 WD40: WD domain, G-be 98.6 1.5E-07 3.3E-12 55.8 5.1 38 308-346 2-39 (39)
312 PF11768 DUF3312: Protein of u 98.6 4.7E-06 1E-10 77.3 16.6 132 111-260 191-331 (545)
313 PF11768 DUF3312: Protein of u 98.5 0.00037 8.1E-09 65.1 28.0 175 229-410 207-405 (545)
314 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.5E-12 91.0 5.2 197 123-354 1099-1297(1516)
315 PF08450 SGL: SMP-30/Gluconola 98.5 0.00011 2.4E-09 64.1 23.5 187 128-337 42-245 (246)
316 PF07433 DUF1513: Protein of u 98.5 4.3E-05 9.4E-10 66.6 19.8 215 181-414 7-256 (305)
317 KOG1920 IkappaB kinase complex 98.5 0.00013 2.7E-09 73.4 25.1 206 126-351 69-325 (1265)
318 PF06977 SdiA-regulated: SdiA- 98.4 0.00034 7.4E-09 60.1 23.3 205 124-345 20-247 (248)
319 COG0823 TolB Periplasmic compo 98.4 6.2E-05 1.3E-09 70.3 19.9 167 173-350 187-360 (425)
320 KOG3621 WD40 repeat-containing 98.4 9.7E-06 2.1E-10 76.4 14.4 209 124-351 32-247 (726)
321 PF08553 VID27: VID27 cytoplas 98.4 0.00013 2.8E-09 72.3 22.8 149 187-348 489-647 (794)
322 KOG1920 IkappaB kinase complex 98.2 0.00064 1.4E-08 68.5 23.6 205 178-407 68-324 (1265)
323 KOG3617 WD40 and TPR repeat-co 98.2 7E-05 1.5E-09 72.2 16.3 109 129-258 19-131 (1416)
324 KOG2066 Vacuolar assembly/sort 98.2 0.00011 2.5E-09 70.4 17.6 190 179-406 40-234 (846)
325 PF13360 PQQ_2: PQQ-like domai 98.2 0.0013 2.8E-08 57.0 23.5 181 190-409 36-234 (238)
326 COG0823 TolB Periplasmic compo 98.2 0.00019 4E-09 67.1 18.5 189 126-338 193-390 (425)
327 TIGR03300 assembly_YfgL outer 98.2 0.0011 2.5E-08 61.8 23.7 217 140-402 147-376 (377)
328 TIGR03300 assembly_YfgL outer 98.2 0.0013 2.9E-08 61.4 23.9 228 140-410 107-343 (377)
329 PF08596 Lgl_C: Lethal giant l 98.2 0.00012 2.5E-09 67.8 15.9 261 127-405 3-335 (395)
330 PF06977 SdiA-regulated: SdiA- 98.1 0.0041 8.9E-08 53.6 23.8 206 173-402 16-247 (248)
331 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0061 1.3E-07 56.3 25.8 252 125-396 42-349 (353)
332 PF02897 Peptidase_S9_N: Proly 98.0 0.014 3E-07 55.4 26.5 250 128-409 126-408 (414)
333 KOG1832 HIV-1 Vpr-binding prot 97.9 2E-05 4.4E-10 76.2 6.9 164 218-406 1092-1256(1516)
334 PF04841 Vps16_N: Vps16, N-ter 97.9 0.019 4.2E-07 53.9 28.0 177 149-349 62-247 (410)
335 KOG2314 Translation initiation 97.9 0.0005 1.1E-08 63.4 15.1 182 181-391 213-410 (698)
336 COG3391 Uncharacterized conser 97.9 0.02 4.3E-07 53.4 28.7 246 127-409 32-287 (381)
337 PF08553 VID27: VID27 cytoplas 97.9 0.00073 1.6E-08 67.1 16.9 146 238-405 491-647 (794)
338 PRK02888 nitrous-oxide reducta 97.9 0.0011 2.5E-08 63.4 17.5 109 236-349 285-405 (635)
339 COG3391 Uncharacterized conser 97.9 0.0079 1.7E-07 56.1 23.1 207 126-351 74-286 (381)
340 PF04053 Coatomer_WDAD: Coatom 97.9 0.003 6.4E-08 59.5 20.0 171 149-349 3-174 (443)
341 KOG3617 WD40 and TPR repeat-co 97.8 0.00064 1.4E-08 65.9 14.7 72 127-210 61-132 (1416)
342 PF08596 Lgl_C: Lethal giant l 97.7 0.0045 9.7E-08 57.4 18.3 205 180-406 3-291 (395)
343 PF04053 Coatomer_WDAD: Coatom 97.7 0.026 5.7E-07 53.2 23.4 224 123-407 30-264 (443)
344 PRK02888 nitrous-oxide reducta 97.7 0.0021 4.5E-08 61.7 15.3 164 229-407 236-406 (635)
345 PF13360 PQQ_2: PQQ-like domai 97.7 0.021 4.6E-07 49.3 21.0 185 137-351 36-233 (238)
346 PF03178 CPSF_A: CPSF A subuni 97.6 0.018 4E-07 52.4 21.1 149 191-349 42-203 (321)
347 COG3386 Gluconolactonase [Carb 97.6 0.05 1.1E-06 48.7 22.8 229 131-396 30-277 (307)
348 KOG4640 Anaphase-promoting com 97.6 0.00046 1E-08 64.7 9.4 95 227-327 20-115 (665)
349 PRK11138 outer membrane biogen 97.6 0.034 7.3E-07 52.3 22.1 182 193-404 207-393 (394)
350 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.024 5.2E-07 52.3 20.7 231 147-405 22-313 (353)
351 KOG2395 Protein involved in va 97.5 0.021 4.5E-07 53.1 19.3 141 194-348 349-500 (644)
352 PF14583 Pectate_lyase22: Olig 97.5 0.033 7.1E-07 50.6 20.5 160 227-404 187-380 (386)
353 KOG2395 Protein involved in va 97.5 0.0036 7.7E-08 57.9 14.1 145 238-404 344-499 (644)
354 KOG4640 Anaphase-promoting com 97.5 0.00066 1.4E-08 63.7 9.6 77 273-353 20-97 (665)
355 KOG3621 WD40 repeat-containing 97.5 0.00082 1.8E-08 63.9 10.2 118 275-406 35-155 (726)
356 KOG4441 Proteins containing BT 97.5 0.019 4E-07 56.4 19.9 237 138-414 285-555 (571)
357 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.01 2.2E-07 43.4 13.1 102 128-253 2-109 (111)
358 smart00320 WD40 WD40 repeats. 97.4 0.00056 1.2E-08 39.3 5.3 38 365-403 3-40 (40)
359 smart00320 WD40 WD40 repeats. 97.3 0.00064 1.4E-08 39.0 4.7 37 170-207 4-40 (40)
360 KOG2444 WD40 repeat protein [G 97.3 0.0009 2E-08 55.1 6.8 145 242-407 32-179 (238)
361 COG3204 Uncharacterized protei 97.3 0.084 1.8E-06 45.7 18.4 178 123-314 83-271 (316)
362 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.023 4.9E-07 41.6 12.9 97 235-343 10-109 (111)
363 COG3490 Uncharacterized protei 97.2 0.048 1E-06 46.8 16.3 106 228-336 68-180 (366)
364 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0015 3.2E-08 39.8 5.5 38 119-157 5-42 (47)
365 PF04841 Vps16_N: Vps16, N-ter 97.1 0.2 4.2E-06 47.2 21.5 49 202-259 62-110 (410)
366 PHA02713 hypothetical protein; 97.1 0.05 1.1E-06 53.5 18.1 150 240-411 352-539 (557)
367 COG3386 Gluconolactonase [Carb 97.1 0.16 3.5E-06 45.4 19.7 204 183-405 29-243 (307)
368 PRK11138 outer membrane biogen 97.0 0.3 6.4E-06 46.0 23.8 227 140-410 122-358 (394)
369 KOG2377 Uncharacterized conser 97.0 0.023 5.1E-07 51.8 13.4 159 230-407 25-187 (657)
370 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.065 1.4E-06 45.3 15.1 127 187-327 19-145 (354)
371 PF06433 Me-amine-dh_H: Methyl 97.0 0.22 4.7E-06 44.6 19.0 160 188-352 144-324 (342)
372 COG3490 Uncharacterized protei 96.9 0.22 4.7E-06 42.9 22.1 214 122-351 64-313 (366)
373 PRK13616 lipoprotein LpqB; Pro 96.9 0.23 5E-06 48.9 20.8 187 126-342 350-562 (591)
374 PF03178 CPSF_A: CPSF A subuni 96.9 0.32 6.9E-06 44.3 22.2 169 113-301 76-262 (321)
375 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.15 3.2E-06 43.3 16.1 110 235-352 18-127 (354)
376 PHA02713 hypothetical protein; 96.9 0.069 1.5E-06 52.5 16.7 144 193-350 354-535 (557)
377 KOG2079 Vacuolar assembly/sort 96.8 0.016 3.5E-07 58.3 11.5 99 193-303 101-202 (1206)
378 PF15390 DUF4613: Domain of un 96.7 0.077 1.7E-06 50.3 14.7 154 179-348 20-186 (671)
379 KOG4441 Proteins containing BT 96.7 0.49 1.1E-05 46.6 21.0 192 123-341 320-534 (571)
380 KOG2079 Vacuolar assembly/sort 96.7 0.011 2.4E-07 59.3 9.4 103 288-405 101-203 (1206)
381 PRK13616 lipoprotein LpqB; Pro 96.5 0.51 1.1E-05 46.6 19.9 152 179-349 350-526 (591)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.78 1.7E-05 42.9 21.0 76 272-351 306-401 (415)
383 PF15390 DUF4613: Domain of un 96.4 0.2 4.4E-06 47.6 15.3 158 122-293 53-220 (671)
384 PF00780 CNH: CNH domain; Int 96.4 0.64 1.4E-05 41.1 25.4 230 139-411 8-261 (275)
385 KOG2444 WD40 repeat protein [G 96.4 0.012 2.7E-07 48.6 6.5 145 193-350 32-179 (238)
386 KOG3630 Nuclear pore complex, 96.3 0.1 2.3E-06 53.1 13.8 150 228-390 101-259 (1405)
387 PF05694 SBP56: 56kDa selenium 96.2 0.98 2.1E-05 41.8 19.1 198 193-407 89-344 (461)
388 PF12894 Apc4_WD40: Anaphase-p 96.2 0.019 4E-07 35.0 5.3 33 374-407 11-43 (47)
389 KOG3630 Nuclear pore complex, 96.2 0.12 2.6E-06 52.7 13.6 148 180-333 102-259 (1405)
390 PF02897 Peptidase_S9_N: Proly 96.2 1.2 2.6E-05 42.2 28.0 208 131-351 175-407 (414)
391 KOG2280 Vacuolar assembly/sort 96.1 1.1 2.4E-05 44.0 18.9 182 147-350 63-248 (829)
392 PF10647 Gmad1: Lipoprotein Lp 95.9 1 2.2E-05 39.3 20.9 155 127-300 25-192 (253)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.5 3.3E-05 41.0 23.0 34 317-351 307-340 (415)
394 PF07995 GSDH: Glucose / Sorbo 95.8 1.5 3.3E-05 40.0 21.9 248 127-400 3-330 (331)
395 PF10647 Gmad1: Lipoprotein Lp 95.7 1.2 2.7E-05 38.8 18.0 161 229-401 25-192 (253)
396 PRK10115 protease 2; Provision 95.6 3.1 6.8E-05 42.2 30.9 200 127-348 128-344 (686)
397 COG3204 Uncharacterized protei 95.5 1.6 3.4E-05 38.2 16.3 172 225-407 83-265 (316)
398 PHA03098 kelch-like protein; P 95.4 1.2 2.6E-05 43.8 17.1 104 240-350 390-513 (534)
399 cd00216 PQQ_DH Dehydrogenases 95.3 3 6.6E-05 40.4 23.1 154 193-352 112-323 (488)
400 PF08728 CRT10: CRT10; InterP 95.3 1.7 3.7E-05 43.3 17.1 117 229-347 102-245 (717)
401 KOG1916 Nuclear protein, conta 95.2 0.0047 1E-07 60.7 -0.2 106 123-243 130-240 (1283)
402 PF08728 CRT10: CRT10; InterP 95.2 1.7 3.6E-05 43.4 16.8 111 191-303 114-245 (717)
403 PHA03098 kelch-like protein; P 95.2 1 2.2E-05 44.3 16.0 153 240-414 343-520 (534)
404 KOG1916 Nuclear protein, conta 95.1 0.012 2.6E-07 58.0 1.9 135 114-261 169-326 (1283)
405 PF10313 DUF2415: Uncharacteri 94.8 0.11 2.3E-06 30.7 4.7 32 126-157 1-34 (43)
406 PF12234 Rav1p_C: RAVE protein 94.8 2.1 4.5E-05 42.2 16.2 123 275-406 31-157 (631)
407 PF06433 Me-amine-dh_H: Methyl 94.8 3 6.4E-05 37.6 21.2 245 131-412 41-327 (342)
408 COG5167 VID27 Protein involved 94.8 2.6 5.7E-05 39.7 15.7 153 183-349 471-633 (776)
409 PF10313 DUF2415: Uncharacteri 94.7 0.14 2.9E-06 30.3 4.9 32 274-305 1-34 (43)
410 KOG2377 Uncharacterized conser 94.6 3 6.6E-05 38.7 15.6 122 123-259 64-186 (657)
411 PRK10115 protease 2; Provision 94.5 6.4 0.00014 40.0 26.0 203 180-405 128-344 (686)
412 PF14870 PSII_BNR: Photosynthe 94.4 3.5 7.5E-05 36.9 18.1 156 175-345 141-301 (302)
413 COG5167 VID27 Protein involved 94.4 0.66 1.4E-05 43.4 11.0 144 238-405 478-632 (776)
414 PF10168 Nup88: Nuclear pore c 94.3 6 0.00013 40.1 18.6 87 125-213 84-183 (717)
415 KOG2247 WD40 repeat-containing 94.2 0.0075 1.6E-07 55.4 -1.5 145 179-339 35-179 (615)
416 PHA02790 Kelch-like protein; P 94.0 3.3 7.1E-05 40.1 16.0 99 193-305 321-424 (480)
417 TIGR02604 Piru_Ver_Nterm putat 93.9 5.4 0.00012 37.1 25.8 151 126-292 14-201 (367)
418 PF12234 Rav1p_C: RAVE protein 93.6 3 6.5E-05 41.2 14.6 114 229-349 31-157 (631)
419 PF00780 CNH: CNH domain; Int 93.3 5.3 0.00012 35.2 19.2 143 193-351 9-168 (275)
420 PF14727 PHTB1_N: PTHB1 N-term 93.3 7.4 0.00016 36.6 26.4 157 135-303 34-203 (418)
421 PF05694 SBP56: 56kDa selenium 93.2 7.2 0.00016 36.4 24.0 198 137-351 87-345 (461)
422 PHA02790 Kelch-like protein; P 93.0 6.6 0.00014 38.0 16.2 147 239-410 318-475 (480)
423 cd00216 PQQ_DH Dehydrogenases 92.9 9.6 0.00021 37.0 23.3 98 242-351 303-427 (488)
424 PF14727 PHTB1_N: PTHB1 N-term 92.9 8.4 0.00018 36.3 18.2 156 188-349 34-205 (418)
425 PF12657 TFIIIC_delta: Transcr 92.9 1.6 3.4E-05 35.6 10.1 32 376-407 87-123 (173)
426 KOG1900 Nuclear pore complex, 92.6 9.2 0.0002 40.5 16.8 166 124-307 77-275 (1311)
427 TIGR02604 Piru_Ver_Nterm putat 92.6 7 0.00015 36.4 15.3 105 228-336 14-142 (367)
428 COG4257 Vgb Streptogramin lyas 92.5 6.6 0.00014 34.1 15.6 203 180-409 63-266 (353)
429 KOG4460 Nuclear pore complex, 92.3 2.1 4.5E-05 40.4 10.8 87 319-407 105-200 (741)
430 PF14583 Pectate_lyase22: Olig 92.2 9.4 0.0002 35.2 16.0 153 183-350 40-224 (386)
431 KOG4499 Ca2+-binding protein R 91.9 7.1 0.00015 33.0 18.9 139 227-385 108-264 (310)
432 KOG2247 WD40 repeat-containing 91.2 0.024 5.2E-07 52.2 -2.5 148 229-400 36-183 (615)
433 PF03022 MRJP: Major royal jel 91.2 10 0.00023 33.8 16.2 158 226-393 59-253 (287)
434 KOG4499 Ca2+-binding protein R 91.2 8.4 0.00018 32.6 19.6 99 228-328 158-264 (310)
435 KOG1898 Splicing factor 3b, su 91.2 21 0.00045 37.2 18.0 112 279-410 939-1053(1205)
436 PF12657 TFIIIC_delta: Transcr 91.0 3 6.5E-05 34.0 9.8 31 180-210 87-122 (173)
437 TIGR03118 PEPCTERM_chp_1 conse 91.0 11 0.00023 33.5 24.4 216 127-351 24-282 (336)
438 PRK13684 Ycf48-like protein; P 90.4 14 0.0003 33.8 17.2 157 125-303 172-330 (334)
439 PF14761 HPS3_N: Hermansky-Pud 89.9 11 0.00023 31.7 15.2 105 240-350 29-165 (215)
440 PF07676 PD40: WD40-like Beta 89.9 1.6 3.4E-05 25.2 5.3 29 374-402 8-38 (39)
441 PF07676 PD40: WD40-like Beta 89.7 1.9 4E-05 24.8 5.6 31 315-345 6-38 (39)
442 KOG1983 Tomosyn and related SN 89.7 14 0.00029 39.3 15.2 38 119-157 29-66 (993)
443 PF07995 GSDH: Glucose / Sorbo 89.6 9 0.0002 35.0 12.6 111 180-294 3-133 (331)
444 KOG1897 Damage-specific DNA bi 89.5 28 0.00061 36.0 25.3 156 180-349 776-943 (1096)
445 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.4 23 0.00049 34.8 23.4 58 251-310 272-338 (527)
446 PF05096 Glu_cyclase_2: Glutam 89.4 14 0.0003 32.2 22.5 197 115-337 32-250 (264)
447 PF10168 Nup88: Nuclear pore c 88.9 29 0.00064 35.4 25.1 83 178-262 84-183 (717)
448 KOG4460 Nuclear pore complex, 88.2 11 0.00024 35.9 11.8 77 275-352 105-202 (741)
449 COG3823 Glutamine cyclotransfe 87.6 15 0.00033 30.6 14.9 196 115-336 33-247 (262)
450 PF13449 Phytase-like: Esteras 87.4 23 0.00049 32.3 21.9 215 179-398 20-311 (326)
451 KOG1900 Nuclear pore complex, 87.2 9.6 0.00021 40.4 11.9 142 198-351 96-275 (1311)
452 TIGR02276 beta_rpt_yvtn 40-res 87.1 2.8 6E-05 24.4 5.2 32 283-315 1-32 (42)
453 COG4590 ABC-type uncharacteriz 87.0 4.4 9.6E-05 37.7 8.5 161 225-407 218-388 (733)
454 PRK13684 Ycf48-like protein; P 86.9 25 0.00054 32.2 16.6 155 178-347 172-330 (334)
455 PF14761 HPS3_N: Hermansky-Pud 86.4 18 0.0004 30.3 12.1 105 193-305 30-164 (215)
456 PF07569 Hira: TUP1-like enhan 86.3 3 6.6E-05 35.4 6.9 67 190-259 22-96 (219)
457 TIGR03606 non_repeat_PQQ dehyd 85.9 33 0.00072 32.8 19.8 57 227-285 29-90 (454)
458 PF05096 Glu_cyclase_2: Glutam 85.6 24 0.00052 30.8 17.6 137 140-293 102-250 (264)
459 PF07569 Hira: TUP1-like enhan 85.4 6 0.00013 33.6 8.2 72 274-350 13-97 (219)
460 PF14781 BBS2_N: Ciliary BBSom 85.2 15 0.00033 28.2 12.0 118 129-259 2-126 (136)
461 TIGR02276 beta_rpt_yvtn 40-res 84.4 4.8 0.0001 23.3 5.4 25 237-261 1-25 (42)
462 PF10214 Rrn6: RNA polymerase 84.2 56 0.0012 33.9 27.0 177 123-305 77-277 (765)
463 TIGR03118 PEPCTERM_chp_1 conse 84.0 31 0.00066 30.7 22.4 212 180-410 24-284 (336)
464 KOG1897 Damage-specific DNA bi 83.4 61 0.0013 33.7 26.1 103 293-411 845-948 (1096)
465 PF14870 PSII_BNR: Photosynthe 83.4 34 0.00073 30.7 24.1 238 122-399 13-255 (302)
466 PF12768 Rax2: Cortical protei 83.0 33 0.00072 30.4 14.3 115 201-327 16-146 (281)
467 TIGR03606 non_repeat_PQQ dehyd 83.0 45 0.00097 31.9 14.5 115 177-293 28-165 (454)
468 PLN02193 nitrile-specifier pro 82.4 49 0.0011 32.0 15.2 62 240-305 279-352 (470)
469 COG5276 Uncharacterized conser 81.5 38 0.00081 30.0 26.0 167 117-307 78-244 (370)
470 KOG1896 mRNA cleavage and poly 80.2 58 0.0013 34.7 13.8 126 113-258 1085-1213(1366)
471 COG5276 Uncharacterized conser 79.9 43 0.00093 29.7 25.2 159 177-351 85-244 (370)
472 PF10214 Rrn6: RNA polymerase 79.9 80 0.0017 32.8 26.9 172 176-350 77-278 (765)
473 PF11635 Med16: Mediator compl 79.7 81 0.0017 32.7 22.8 205 193-400 64-345 (753)
474 KOG2280 Vacuolar assembly/sort 78.4 80 0.0017 31.9 14.3 51 201-260 64-114 (829)
475 TIGR03548 mutarot_permut cycli 78.3 53 0.0011 29.8 18.2 107 240-350 73-196 (323)
476 PLN02193 nitrile-specifier pro 77.4 32 0.0007 33.3 11.1 21 241-261 330-354 (470)
477 COG4590 ABC-type uncharacteriz 77.2 38 0.00083 31.8 10.6 162 125-305 220-387 (733)
478 PLN00033 photosystem II stabil 76.9 67 0.0015 30.2 18.1 115 178-301 280-396 (398)
479 PF13449 Phytase-like: Esteras 75.7 64 0.0014 29.4 22.2 159 125-287 19-228 (326)
480 PF02333 Phytase: Phytase; In 75.1 72 0.0016 29.7 17.5 133 179-313 156-299 (381)
481 PF01731 Arylesterase: Arylest 74.9 20 0.00044 25.1 6.6 31 376-406 55-85 (86)
482 PF11715 Nup160: Nucleoporin N 74.8 12 0.00025 37.1 7.6 35 318-352 215-252 (547)
483 PF12768 Rax2: Cortical protei 74.2 63 0.0014 28.7 14.0 96 250-351 16-126 (281)
484 PF11715 Nup160: Nucleoporin N 74.2 12 0.00026 37.0 7.5 38 275-313 216-256 (547)
485 COG5290 IkappaB kinase complex 74.2 1.1E+02 0.0023 31.3 14.1 70 277-350 250-326 (1243)
486 KOG3616 Selective LIM binding 74.1 1E+02 0.0022 31.3 13.0 110 179-302 15-124 (1636)
487 PLN02153 epithiospecifier prot 73.8 73 0.0016 29.2 18.4 22 240-261 138-170 (341)
488 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.9 1E+02 0.0022 30.4 19.3 67 193-262 71-142 (527)
489 KOG3522 Predicted guanine nucl 72.8 19 0.00041 36.4 8.0 150 140-305 549-698 (925)
490 TIGR02171 Fb_sc_TIGR02171 Fibr 72.5 49 0.0011 34.3 11.0 84 249-336 328-417 (912)
491 PF12341 DUF3639: Protein of u 72.3 10 0.00023 19.9 3.5 26 126-154 2-27 (27)
492 TIGR03548 mutarot_permut cycli 71.1 81 0.0018 28.6 20.3 63 240-305 124-195 (323)
493 PF01731 Arylesterase: Arylest 70.0 29 0.00064 24.4 6.5 32 274-305 54-85 (86)
494 PLN00033 photosystem II stabil 68.9 1E+02 0.0023 29.0 18.2 110 273-402 280-396 (398)
495 KOG1520 Predicted alkaloid syn 68.2 1E+02 0.0022 28.5 13.5 57 338-409 197-253 (376)
496 PF11635 Med16: Mediator compl 67.4 1.6E+02 0.0035 30.6 17.5 70 228-299 260-345 (753)
497 PF08801 Nucleoporin_N: Nup133 66.3 84 0.0018 29.8 11.1 30 376-406 191-220 (422)
498 PF02333 Phytase: Phytase; In 66.2 1.1E+02 0.0025 28.4 21.8 192 193-406 70-291 (381)
499 PF03022 MRJP: Major royal jel 59.4 1.3E+02 0.0029 26.8 12.9 31 376-407 187-217 (287)
500 PF01436 NHL: NHL repeat; Int 59.2 23 0.00051 18.5 3.5 25 377-402 4-28 (28)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-81 Score=540.74 Aligned_cols=415 Identities=69% Similarity=1.171 Sum_probs=387.3
Q ss_pred CchhhhhhhhhhhhhHHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEE
Q 014472 3 KDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLML 82 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i 82 (424)
+.|++|++.++.+.|+|+|++||||+|||||.+++|.|+||||+|+|+|+..+....++..|||++||+|+++.+|+|+|
T Consensus 2 ~~~~~~~~~~~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 2 NAEEAMDEALEQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred chHhhccchhccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEE
Confidence 45778888888889999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred EEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC
Q 014472 83 AQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP 162 (424)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~ 162 (424)
+++.||..+.......++.+.+++++++...+++++.+++.|.+.|++++++|+++.++|+++..+.|+|||..++...+
T Consensus 82 A~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~ 161 (422)
T KOG0264|consen 82 ASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP 161 (422)
T ss_pred EeecCCCcccccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc
Confidence 99999988888777888888889898988899999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCC-CCcccceeeeecCCcceeeEEeeCCCCc
Q 014472 163 PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEY 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 241 (424)
...+.+.|..++.+|..+.++|+|++...+.|++|+.|+.|++||+..... ...+.+...+.+|...|.+++|++....
T Consensus 162 ~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~ 241 (422)
T KOG0264|consen 162 KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED 241 (422)
T ss_pred cccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh
Confidence 655578899999999999999999999998999999999999999988765 3556777889999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEE
Q 014472 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF 321 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 321 (424)
+|+++++|+.+.|||+|+. ..++.....+|.++|+|++|+|.+.++||+|+.|++|++||+|++..++.++.+|+..|.
T Consensus 242 lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF 320 (422)
T ss_pred hheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE
Confidence 9999999999999999975 455677778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
+|.|+|+...+||+++.|+.+.+||+.....++...+.+++|++++|.|.||...|.++.|+|+.+++|+|+++|+.++|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCC
Q 014472 402 WQMAENIYHDEDDLPGD 418 (424)
Q Consensus 402 w~~~~~~~~~~~~~~~~ 418 (424)
|++...++..++.++..
T Consensus 401 W~~s~~i~~~e~~~~~~ 417 (422)
T KOG0264|consen 401 WQMAENIYNPEDPEESA 417 (422)
T ss_pred eeccccccCccccCccc
Confidence 99999999887775543
No 2
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=323.23 Aligned_cols=365 Identities=29% Similarity=0.546 Sum_probs=291.9
Q ss_pred hhHHHHhhhcCCCCCccEEEEccCCCCCCCCCCc-eEEEEEeecCCCCCCCeEEEEEEE-cCCCCCCcccCCCCCcCCCC
Q 014472 29 PFLYDLVITHALEWPSLTVEWLPDREEPPGKDYS-VQKMILGTHTSENEPNYLMLAQVQ-LPLDDSENDARHYDDDRSDF 106 (424)
Q Consensus 29 ~~~y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~-~~~~~~gt~~~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (424)
|..|.+++.....||||+|+.+|+..+..+..|+ +-+++.||++.....|.|.++++. |.......+....+++....
T Consensus 57 psaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edde 136 (440)
T KOG0302|consen 57 PSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDE 136 (440)
T ss_pred HHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccch
Confidence 7799999999999999999999999999999998 457889999999999999998885 32211111100000000000
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCC------CCCCCCCcEEEecCCC
Q 014472 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPP------LDGACSPDLRLRGHST 179 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~-~~~~latg~~dg~v~iwd~~~~~~~~~------~~~~~~~~~~~~~h~~ 179 (424)
. ...++++ .+.++|.+.++.++.++. +..+.|+-+..|.|+||++..+..... ......++.++.+|..
T Consensus 137 d---D~~P~~~-~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~ 212 (440)
T KOG0302|consen 137 D---DRKPQIE-MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG 212 (440)
T ss_pred h---hcccccc-ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc
Confidence 0 0234444 557899999999999986 456888889999999999976432221 2245678899999999
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
..++|+|+|...+.|++|..-+.|++|...++.-. + -...+.+|+..|.+++|+|....+||+|+.||+|+|||+|.
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--v-d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--V-DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred cceeeecccccccccccCccccceEeeeeccCcee--e-cCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 99999999987778999999999999999875422 1 12345679999999999999999999999999999999999
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--CCcceeecCCCCCEEEEEEcCCCCcEEEEEe
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 337 (424)
+.....+ ..++|.+.|+.|+|+..-+ +||+|+.||+++|||+|.. ++|+..++.|..+|+++.|+|.....|++++
T Consensus 290 ~~~~~~~-~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 290 GPKKAAV-STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCcccee-EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence 8643333 4489999999999999887 8999999999999999964 5789999999999999999999888999999
Q ss_pred CCCeEEEeeCCCCCcc-----cCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 338 LGRRLMVWDLSRIDEE-----QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
.|.+|.|||+...... .......+-|++++|+|+|.+ .+..+.|+++-+.++++.+.|| +.||..
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-HhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 9999999999875532 122224467899999999865 5999999999999999999999 666653
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-44 Score=307.63 Aligned_cols=248 Identities=25% Similarity=0.391 Sum_probs=227.0
Q ss_pred EEEEeccCCceeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 118 IIQQINHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~-~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+....+|.+.|.++.|+|. ...-+|||+.||+|++|+++. ..++..+.+|...|..++|+|+|. +|+|
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~----------e~~l~~l~gH~~RVs~VafHPsG~-~L~T 278 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ----------ETPLQDLEGHLARVSRVAFHPSGK-FLGT 278 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC----------CcchhhhhcchhhheeeeecCCCc-eeee
Confidence 3456689999999999997 355799999999999999987 477888999999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
++.|.+-++||+++.. .+....+|...|.+++|+++|. ++++|+.|..-+|||+|++.+ +..+.+|..+|
T Consensus 279 asfD~tWRlWD~~tk~------ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~---im~L~gH~k~I 348 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKS------ELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC---IMFLAGHIKEI 348 (459)
T ss_pred cccccchhhcccccch------hhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcE---EEEecccccce
Confidence 9999999999998874 3445678999999999999996 888999999999999999875 88889999999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+|+|+|+|- .||||+.|++++|||+|. ...+.++.+|..-|+.+.|+|....+|+|++.|++++||...+.
T Consensus 349 ~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------ 420 (459)
T KOG0272|consen 349 LSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------ 420 (459)
T ss_pred eeEeECCCce-EEeecCCCCcEEEeeecc-cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc------
Confidence 9999999885 799999999999999998 77799999999999999999976689999999999999999875
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
+++.++.||.+.|.++..++++. .|+|++.|.++++|.
T Consensus 421 --------~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 --------SPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred --------ccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 66888899999999999999999 699999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-43 Score=300.51 Aligned_cols=251 Identities=21% Similarity=0.429 Sum_probs=220.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+|.++|.|++|+|++. .||+|+.|.++++||+.+ ..+..+.++|..-|.|++|+|++. .|++|+.||+
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~T----------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~ 180 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDT----------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGS 180 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCC----------CCcceeecCCccEEEEEEECCCcc-hhhccccCCe
Confidence 6999999999999887 899999999999999998 678899999999999999999998 6999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCC----CcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH----EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
|++||..+++. ....+.+|...|++++|.|-. ...+|+++.||.++|||+..+.+ +..+.+|..+|+|
T Consensus 181 I~lwdpktg~~-----~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 181 IRLWDPKTGQQ-----IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---VRTLSGHTASVTC 252 (480)
T ss_pred EEEecCCCCCc-----ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE---EEEeccCccceEE
Confidence 99999988864 345578999999999998742 24789999999999999998665 7888899999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCC---------------------------------------------------
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKIS--------------------------------------------------- 307 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------------------------------------------------- 307 (424)
+.|--+| ++++|+.|++|++|+.....
T Consensus 253 vrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 253 VRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 9998543 78999999999999764410
Q ss_pred ---------------------------CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC
Q 014472 308 ---------------------------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 308 ---------------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
+++..+.+|..-|+.+.|||++. ++|+++.|..|++|+.+++
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tG---------- 399 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTG---------- 399 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCc----------
Confidence 12344567888999999999996 8999999999999999987
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
+.+.+++||...|+.++|+.|.+ ||++|+.|.+++||++.+..+..
T Consensus 400 ----k~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 400 ----KFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred ----chhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecc
Confidence 56788899999999999999999 89999999999999999987653
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-42 Score=292.65 Aligned_cols=247 Identities=26% Similarity=0.450 Sum_probs=215.7
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC----CceEEE
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK----EGHLLS 196 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~l~s 196 (424)
-.+|..-|.|++|+||++ .||+|+.||.|++||..+. ......+.+|...|++|+|.|-. ..+|++
T Consensus 153 ~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg---------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTG---------QQIGRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred ecCCccEEEEEEECCCcc-hhhccccCCeEEEecCCCC---------CcccccccCcccceeEEeecccccCCCccceec
Confidence 348999999999999998 8999999999999998762 23346789999999999998742 237999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC-------------
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------- 263 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------- 263 (424)
++.||.|+|||+..+ .++..+.+|+.+|+|++|-.++ ++++|+.|++|++|+...+...
T Consensus 223 ~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~l 294 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHL 294 (480)
T ss_pred ccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeee
Confidence 999999999999876 4567788999999999997544 7889999999999987653110
Q ss_pred ---------------------------------------------------------------CCeeEecccCCCeeEEE
Q 014472 264 ---------------------------------------------------------------KPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 264 ---------------------------------------------------------------~~~~~~~~~~~~v~~i~ 280 (424)
+++..+.+|..-|+.+.
T Consensus 295 alsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~ 374 (480)
T KOG0271|consen 295 ALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS 374 (480)
T ss_pred eccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE
Confidence 34556678899999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|++. ++|+++.|..|++||-++ ++.+.+|.+|-.+|..++|+.+.+ +|++|+.|.++++|++++.
T Consensus 375 fSPd~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk---------- 441 (480)
T KOG0271|consen 375 FSPDGR-YIASASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK---------- 441 (480)
T ss_pred ECCCcc-EEEEeecccceeeeeCCC-cchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee----------
Confidence 999998 699999999999999999 899999999999999999999985 8999999999999999984
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.+...+.||...|..+.|+|||. .+++|+.|..+++|.
T Consensus 442 ----Kl~~DLpGh~DEVf~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 ----KLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred ----eecccCCCCCceEEEEEecCCCc-eeecCCCceEEEeec
Confidence 56677789999999999999999 799999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-43 Score=301.00 Aligned_cols=251 Identities=24% Similarity=0.405 Sum_probs=227.1
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC-CceEEEEe
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-EGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~ 198 (424)
.+++-..+|..+.|++++. +||||+-+|.++||+... +....++.+|...+.++.|+|.. ..-+++|+
T Consensus 170 SQ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~----------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s 238 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQ----------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS 238 (459)
T ss_pred hhccCCCcceeeEeecCCC-eEEEeecCCceeEeecCC----------cceeEEEeccccceeeEEEccCCCccceeeec
Confidence 3566778999999999887 899999999999999987 67788999999999999999983 44699999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.||++++|++.+. .++..+.+|...|..++|+|+|++ +++++.|.+-++||+++... +....+|...|.+
T Consensus 239 ~Dgtvklw~~~~e------~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~E---lL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE------TPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSE---LLLQEGHSKGVFS 308 (459)
T ss_pred cCCceeeeccCCC------cchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchh---hHhhcccccccce
Confidence 9999999999875 467778899999999999999975 57999999999999999775 5556799999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
++|+|+|. ++++|+.|..-+|||+|+ +.++..+.+|..+|.+++|+|+| +.||||+.|++++|||++..
T Consensus 309 iaf~~DGS-L~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r-------- 377 (459)
T KOG0272|consen 309 IAFQPDGS-LAATGGLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR-------- 377 (459)
T ss_pred eEecCCCc-eeeccCccchhheeeccc-CcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc--------
Confidence 99999998 899999999999999999 89999999999999999999999 57999999999999999975
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
..+..+.+|.+-|+.|+|+|+..++|+|++.|++++||...+..
T Consensus 378 ------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 378 ------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred ------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence 44788899999999999999666699999999999999987754
No 7
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-41 Score=272.06 Aligned_cols=298 Identities=24% Similarity=0.438 Sum_probs=254.5
Q ss_pred CCccEEEEccCCCCCCCCCCceEEEEEeecCCC--CCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEE
Q 014472 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSE--NEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQII 119 (424)
Q Consensus 42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~--~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (424)
.-=++++|.|..+ .|++++|.+.= .....+.|.++. ..+.+...
T Consensus 9 f~GysvqfSPf~~---------nrLavAt~q~yGl~G~G~L~ile~~-------------------------~~~gi~e~ 54 (311)
T KOG0277|consen 9 FHGYSVQFSPFVE---------NRLAVATAQHYGLAGNGRLFILEVT-------------------------DPKGIQEC 54 (311)
T ss_pred cccceeEeccccc---------chhheeehhhcccccCceEEEEecC-------------------------CCCCeEEE
Confidence 4457899999865 45666553211 122355665552 12457777
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+.-.+.+..++|++...+.+++++.||+++|||+.. ...|+..++.|..+|+++.|++.....++++|-
T Consensus 55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~---------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM---------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred EeeecccceeEeeecCCCcceEEEEecCceEEEeccCC---------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 88888999999999999888999999999999999654 256788899999999999999988778999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|++|++|+...+ ..+.++.+|...|...+|+|..+++|++++.|+++++||+|.... ...+..|...|.|+
T Consensus 126 D~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 126 DGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCC 196 (311)
T ss_pred CCceEeecCCCC------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEee
Confidence 999999999766 346778999999999999999999999999999999999998653 44578899999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.|+..++++++||+.|+.|+.||+|+...|+..+.+|.-+|..+.|||....+||+++.|-+++|||.....
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-------- 268 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-------- 268 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--------
Confidence 999999999999999999999999999999999999999999999999998999999999999999998643
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
.++.+...|+.-|.++.|++..+..+|+++.|+.++||+.
T Consensus 269 -----s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 -----SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4455556788899999999988778999999999999985
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-39 Score=299.70 Aligned_cols=268 Identities=28% Similarity=0.461 Sum_probs=232.3
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCC----------CCC-----------CCCCCCCC
Q 014472 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP----------SKP-----------PLDGACSP 170 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~----------~~~-----------~~~~~~~~ 170 (424)
..+.+-.....+-...++|..|++++. ++|.|..|..|++|.+.... ..+ ........
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 345566666666778999999999887 89999999999999998411 000 01122233
Q ss_pred cEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg 250 (424)
..++.+|.++|+++.|+|+.. +|++||.|+++++|.+.+. .++..+++|..+|++++|+|.| +.||+++.|+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~ 515 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQ 515 (707)
T ss_pred eEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecCCc-eEEEecCCCc
Confidence 456899999999999999887 8999999999999999766 4677788999999999999997 6889999999
Q ss_pred eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCC
Q 014472 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 330 (424)
+.++|.... ..|+..+.+|-+.|.|++|+|+.. ++|+|+.|.++++||+.+ +..++.|.+|.++|++++|||+|.
T Consensus 516 tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeeccc---CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc
Confidence 999999987 446888889999999999999887 699999999999999998 888999999999999999999996
Q ss_pred cEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+|++|+.||.|+|||+..+ .++..+.+|++.|.++.|+.+|. +||+||.|++|++||+..-..
T Consensus 591 -~LaSg~ed~~I~iWDl~~~--------------~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 591 -YLASGDEDGLIKIWDLANG--------------SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred -eEeecccCCcEEEEEcCCC--------------cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcc
Confidence 7999999999999999986 56777889999999999999999 899999999999999976543
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.5e-39 Score=274.47 Aligned_cols=247 Identities=23% Similarity=0.433 Sum_probs=214.7
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCCeeeEEecCCCCceEEEEeCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..|..+|.++.|++++. .+++|+.+|.|++|+..- ..+..+.+| ...|++++|+|++. .|++|+.|
T Consensus 135 QaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnm-----------nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdD 201 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNM-----------NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDD 201 (464)
T ss_pred hhhcccceeEEEccCCC-EEEEcCCCceEEecccch-----------hhhHHhhHhhhhhhheeccCCCCc-eeEEecCC
Confidence 47999999999999886 899999999999999875 333444554 48999999999776 69999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
|+|+|||...... ...+.+|.-.|.+++|+|... ++|+|+.|..|++||.|++++ +.++..|+..|..+.
T Consensus 202 g~ikiWdf~~~ke------e~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~c---l~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 202 GTIKIWDFRMPKE------ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSC---LATLHGHKNTVLAVK 271 (464)
T ss_pred CeEEEEeccCCch------hheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcch---hhhhhhccceEEEEE
Confidence 9999999976633 344688999999999999865 788999999999999999886 777889999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|+++ +|++++.|..+++||+|+ -+.+..+++|+..|+++.|+|-.+.+|.+|+.||.|..|.+....
T Consensus 272 f~~n~N-~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--------- 340 (464)
T KOG0284|consen 272 FNPNGN-WLLTGSKDQSCKVFDIRT-MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--------- 340 (464)
T ss_pred EcCCCC-eeEEccCCceEEEEehhH-hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc---------
Confidence 999996 699999999999999996 577899999999999999999988999999999999999997422
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+...-.+|...|++++|+|-|. +|++|+.|.++++|.-...
T Consensus 341 ----p~~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 341 ----PLGEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ----cccCCCcccccceeeeeccccce-eEeecCCCcceeeeccCCC
Confidence 22222357899999999999999 8999999999999976543
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=248.13 Aligned_cols=245 Identities=25% Similarity=0.404 Sum_probs=214.4
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEE
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
..-|..++|+|.+. ++|+|+-|+...||++...... +.......+.+|.+-+.++.|.+++ .|+++|.|.+..
T Consensus 97 s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~----g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCa 169 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAE----GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCA 169 (343)
T ss_pred ceeEEEEEECCCCC-eEEecCcCceeEEEeccccccc----ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEE
Confidence 35788999999886 8999999999999999863222 2234556789999999999999854 499999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
+||++++ +.+..+.+|.+.|.++.++|...+.|++|+.|+..++||+|.+.. .+.+.+|.+.|++++|.|+
T Consensus 170 lWDie~g------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF~ghesDINsv~ffP~ 240 (343)
T KOG0286|consen 170 LWDIETG------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTFEGHESDINSVRFFPS 240 (343)
T ss_pred EEEcccc------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEeecccccccceEEEccC
Confidence 9999988 456778899999999999996667888999999999999999765 8999999999999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 285 NEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 285 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|. -|++|+.|++.++||+|. .+.+..+.. -..+|++++||..|+ +|++|..|.++.+||.-.+
T Consensus 241 G~-afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~------------ 305 (343)
T KOG0286|consen 241 GD-AFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKG------------ 305 (343)
T ss_pred CC-eeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecccc------------
Confidence 98 599999999999999998 666666653 345899999999996 7889999999999998764
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
+.+..+.||.+.|+++..+|+|. .++||+.|.+++||.
T Consensus 306 --e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 --ERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred --ceEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 55777889999999999999999 799999999999994
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=245.69 Aligned_cols=255 Identities=15% Similarity=0.253 Sum_probs=220.4
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|.+.|.++.|+++.+ .|++++.||.+.|||.-+ ......+.-....|..++|+|.++ ++++|+.|+
T Consensus 52 kGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~T----------tnK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN 119 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFT----------TNKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDN 119 (343)
T ss_pred cccccceeeeEecCCcC-eEEeeccCCeEEEEEccc----------ccceeEEecCceeEEEEEECCCCC-eEEecCcCc
Confidence 37999999999999887 799999999999999877 333455555677899999999988 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
...||++.+..........+.+.+|.+.+.++.|.+++ ++ ++++.|.+..+||+.+++. +..+.+|.+.|.++++
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~i-lT~SGD~TCalWDie~g~~---~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HI-LTGSGDMTCALWDIETGQQ---TQVFHGHTGDVMSLSL 194 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ce-EecCCCceEEEEEcccceE---EEEecCCcccEEEEec
Confidence 99999998664444455566788999999999999865 45 5999999999999999775 8888999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
.|...+.|++|+-|+..++||+|. +.++++|.+|...|+++.|.|+|. -+++|+.|++.++||++...+
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~~--------- 263 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQE--------- 263 (343)
T ss_pred CCCCCCeEEecccccceeeeeccC-cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCcE---------
Confidence 995445799999999999999999 799999999999999999999996 699999999999999998643
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
..++....-..+|++++|+..|+ +|.+|..|..+.+||.-.+.
T Consensus 264 ---~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 264 ---LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ---EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccc
Confidence 33444455566899999999999 78888999999999987663
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-36 Score=245.47 Aligned_cols=260 Identities=23% Similarity=0.329 Sum_probs=220.1
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|++.|+.++..+.++.++.+++.|..+.+|++..... ....+.+.+.||...|..+..+++++ +.++++.|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-----~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD 84 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-----KYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWD 84 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-----ccCceeeeeeccceEecceEEccCCc-eEEecccc
Confidence 4479999999999999899999999999999999987532 23567889999999999999999988 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc--cCCCeeE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNC 278 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~ 278 (424)
+++++||+.++ +..+.+.+|...|.+++|+++++.+ ++|+.|.+|++|++.... ..++.. +...|+|
T Consensus 85 ~~lrlWDl~~g------~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~c----k~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 85 GTLRLWDLATG------ESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVC----KYTIHEDSHREWVSC 153 (315)
T ss_pred ceEEEEEecCC------cEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccE----EEEEecCCCcCcEEE
Confidence 99999999887 3567789999999999999998765 599999999999997643 233322 2778999
Q ss_pred EEecCCC-CeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 279 LAFNPFN-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 279 i~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
+.|+|.. +.+|++++.|+++++||+++ .+....+.+|++.++.+++||+|. ++++|+.||.+.+||++.++
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k------ 225 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK------ 225 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc------
Confidence 9999983 34799999999999999998 678889999999999999999995 89999999999999999863
Q ss_pred ccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 014472 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP 416 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 416 (424)
.++.+ +|...|.+++|+|+..+ |+. ..+..|+||++.++...++-..+
T Consensus 226 --------~lysl-~a~~~v~sl~fspnryw-L~~-at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 226 --------NLYSL-EAFDIVNSLCFSPNRYW-LCA-ATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred --------eeEec-cCCCeEeeEEecCCcee-Eee-ccCCceEEEeccchhhhhhcccc
Confidence 34443 56778999999999875 443 34566999999998765544433
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-36 Score=263.39 Aligned_cols=248 Identities=23% Similarity=0.449 Sum_probs=220.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.-...|++++|+.+|. +||+|+.+|.++||+... ....++..|+++|.+|.|+..|. +|++++.||+
T Consensus 233 ~~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~t 299 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGT 299 (524)
T ss_pred CccCCcceEEecCCCC-eEEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCcc
Confidence 4457899999999887 999999999999999876 44667888999999999999888 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+.+||..++ ...+.+.-|..+-.++.|-.+. -||+++.||.|+|+.+.... |+.++.+|.++|.+|.|+
T Consensus 300 tilwd~~~g------~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~---P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 300 TILWDAHTG------TVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR---PVKTFIGHHGEVNALKWN 368 (524)
T ss_pred EEEEeccCc------eEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC---cceeeecccCceEEEEEC
Confidence 999999777 3455566788887889998765 47899999999999998744 688888999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCC--------cEEEEEeCCCeEEEeeCCCCCccc
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE--------TILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~--------~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|.+. +|++++.|++++||.... ......+.+|+..|..+.|+|.++ ..+++++.|++|++||+..+
T Consensus 369 ~tg~-LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 369 PTGS-LLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCc-eEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 9998 899999999999999887 788899999999999999999763 47899999999999999886
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
.+++.+..|..+|++++|+|+|+ .+|+|+.||+|++|+..++.+-.
T Consensus 443 ----------v~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 443 ----------VPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ----------ceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeE
Confidence 67888999999999999999999 59999999999999999986543
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=238.97 Aligned_cols=255 Identities=18% Similarity=0.394 Sum_probs=216.2
Q ss_pred EEEEeccC-CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~-~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+.+++.|+ +.|+++...|+++ .||+++ ...|++||+++ ....|+.++.+|...|+++.|..+|. .+++
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S--------~np~Pv~t~e~h~kNVtaVgF~~dgr-WMyT 100 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNS--------NNPNPVATFEGHTKNVTAVGFQCDGR-WMYT 100 (311)
T ss_pred EEEEEecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccC--------CCCCceeEEeccCCceEEEEEeecCe-EEEe
Confidence 46788887 6899999999887 677766 46899999998 44568899999999999999999988 8999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|+.||+++|||++.....+. + .|.++|+++..+|....|| +|..+|.|++||++...+... .+..-..+|
T Consensus 101 gseDgt~kIWdlR~~~~qR~------~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~--liPe~~~~i 170 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRN------Y-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHE--LIPEDDTSI 170 (311)
T ss_pred cCCCceEEEEeccCcccchh------c-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccc--cCCCCCcce
Confidence 99999999999987543222 2 3779999999999987665 999999999999998754222 223445789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCC-----CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.++...|+|. .++.+...|..++|++-.. -.|+..++.|++.+..+.+||+++ +||+++.|.+++||+....
T Consensus 171 ~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 171 QSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred eeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCc-
Confidence 9999999998 5888888999999998652 257888999999999999999997 7999999999999999874
Q ss_pred cccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
..+-..+.+|...+++.+||.++.| |++++.|+.+++|++..+..
T Consensus 248 ------------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 248 ------------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ------------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCce
Confidence 1455667899999999999999995 89999999999999998753
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-36 Score=277.25 Aligned_cols=253 Identities=19% Similarity=0.347 Sum_probs=217.1
Q ss_pred cEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
........+|.++|..++|+|+.+ +|++++.|++||+|.+.+ ......+.||..+|+.+.|+|.|- +|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t----------~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDT----------WSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred CceeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeeccc----------ceeEEEecCCCcceeeEEecCCce-EE
Confidence 444455889999999999999886 899999999999999998 677888999999999999999876 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
|||+.|++.++|..... .+++.+.+|-+.|.|++|+|+..+ +|+|+.|.+|++||+.++.. +..+.+|.+
T Consensus 509 atas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~---VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNS---VRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecccC------CchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCCCcE---EEEecCCCC
Confidence 99999999999998764 577889999999999999999875 57999999999999999875 888899999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
+|.+++|+|.|. .||+|+.||.|.+||+.+ +.++..+.+|++.|.++.|+.+|. +||+|+.|.+|++||+.......
T Consensus 579 ~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~ 655 (707)
T KOG0263|consen 579 PVTALAFSPCGR-YLASGDEDGLIKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELL 655 (707)
T ss_pred ceEEEEEcCCCc-eEeecccCCcEEEEEcCC-CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccc
Confidence 999999999998 599999999999999998 789999999999999999999995 89999999999999997654430
Q ss_pred ----------CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE
Q 014472 355 ----------TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV 393 (424)
Q Consensus 355 ----------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 393 (424)
......+....++..+.....+|..+.|....- +|+.|
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl-~L~~g 703 (707)
T KOG0263|consen 656 NLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL-LLAVG 703 (707)
T ss_pred cccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce-eEEec
Confidence 001111233456777777778899999987653 45554
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=241.08 Aligned_cols=255 Identities=18% Similarity=0.318 Sum_probs=205.9
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
.+.-+|...|..+..++++. +..+++.|+++++||+.. .++...+.+|...|.+++|++++. .+++|+
T Consensus 57 r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~----------g~~t~~f~GH~~dVlsva~s~dn~-qivSGS 124 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDLAT----------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGS 124 (315)
T ss_pred eeeeccceEecceEEccCCc-eEEeccccceEEEEEecC----------CcEEEEEEecCCceEEEEecCCCc-eeecCC
Confidence 34457999999999999987 889999999999999998 577889999999999999999888 599999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeec--CCcceeeEEeeCCC-CcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKV--HEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
.|.+|.+|++.... ...... +++.|+|++|+|.. .-+|++++.|++|++||+++.+. ...+.+|.+.
T Consensus 125 rDkTiklwnt~g~c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---~~~~~gh~~~ 194 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVC-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---RTTFIGHSGY 194 (315)
T ss_pred CcceeeeeeecccE-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---hhcccccccc
Confidence 99999999997642 222222 37889999999984 44678999999999999999664 6677899999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
++.++++|+|. +.++|+.||.+.+||++. ++.+..+. |...|.+++|+|+.. .|+.+ .+-.|+|||+........
T Consensus 195 v~t~~vSpDGs-lcasGgkdg~~~LwdL~~-~k~lysl~-a~~~v~sl~fspnry-wL~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 195 VNTVTVSPDGS-LCASGGKDGEAMLWDLNE-GKNLYSLE-AFDIVNSLCFSPNRY-WLCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred EEEEEECCCCC-EEecCCCCceEEEEEccC-CceeEecc-CCCeEeeEEecCCce-eEeec-cCCceEEEeccchhhhhh
Confidence 99999999998 899999999999999998 66666665 588999999999873 45444 445599999998765443
Q ss_pred CCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
......++ ........-.+++|+++|. .|.+|-.|+.|++|.+..
T Consensus 270 l~~d~~g~-----s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 270 LKLDGIGP-----SSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cccccccc-----ccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEeec
Confidence 33222222 1111222356789999999 688899999999999853
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=264.93 Aligned_cols=251 Identities=24% Similarity=0.452 Sum_probs=217.3
Q ss_pred cEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
+|.-.....-...|+.++|.|.|+ .|++|+..|.+.+|+... ......++.|...|.++.|++++. .+
T Consensus 86 Kf~h~s~NKvkc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~----------fnFEtilQaHDs~Vr~m~ws~~g~-wm 153 (464)
T KOG0284|consen 86 KFVHTSSNKVKCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTS----------FNFETILQAHDSPVRTMKWSHNGT-WM 153 (464)
T ss_pred ceEeccccccccceeeEEEcCCCc-eeEeecccccEEEecCce----------eeHHHHhhhhcccceeEEEccCCC-EE
Confidence 333333344556899999999997 688999999999999866 333445778999999999999988 79
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-cceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
++|+.+|.|++|+.+.. .++.++.|. ..|++++|+|.+. .|+++++||+|+|||.+.... -..+.+|.
T Consensus 154 iSgD~gG~iKyWqpnmn-------nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke---e~vL~GHg 222 (464)
T KOG0284|consen 154 ISGDKGGMIKYWQPNMN-------NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE---ERVLRGHG 222 (464)
T ss_pred EEcCCCceEEecccchh-------hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch---hheeccCC
Confidence 99999999999998654 233344454 8999999999765 678999999999999998664 45567999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcc
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
-.|.+++|+|... ++|+|+.|..|++||.|+ +.++.++..|+..|..+.|+|++ .+|+++|.|..++++|++..+
T Consensus 223 wdVksvdWHP~kg-LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk-- 297 (464)
T KOG0284|consen 223 WDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK-- 297 (464)
T ss_pred CCcceeccCCccc-eeEEccCCceeEeecCCC-cchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH--
Confidence 9999999999877 899999999999999999 89999999999999999999999 589999999999999999653
Q ss_pred cCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
-++.+++|...|+++.|+|-...+|++|+.||.|..|.+.
T Consensus 298 ------------El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 298 ------------ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ------------HHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 3777899999999999999988899999999999999997
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=251.29 Aligned_cols=252 Identities=26% Similarity=0.403 Sum_probs=223.6
Q ss_pred cEEEEEEe-ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 115 KVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 115 ~~~~~~~~-~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
+.++.+.+ +|.+-|.|+++.|.+. .||+|+.|++|.|||+.+ .+...++.+|...|..+++++-.+ +
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlat----------g~LkltltGhi~~vr~vavS~rHp-Y 207 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLAT----------GQLKLTLTGHIETVRGVAVSKRHP-Y 207 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEccc----------CeEEEeecchhheeeeeeecccCc-e
Confidence 34444444 6999999999999775 999999999999999998 566788999999999999999888 8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++++.|+.|+.||+... +.++.+.+|-+.|.+++.+|.-. ++++|+.|.+++|||+|+.. .+..+.+|.
T Consensus 208 lFs~gedk~VKCwDLe~n------kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~---~V~~l~GH~ 277 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYN------KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA---SVHVLSGHT 277 (460)
T ss_pred EEEecCCCeeEEEechhh------hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc---eEEEecCCC
Confidence 999999999999999877 45677889999999999999876 66799999999999999965 488999999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcc
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
.+|.++.+.|.++ .+++|+.|++|++||++. ++...++..|+..|.+++.+|.. +++|+++.|. |+-|++..+
T Consensus 278 ~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p~g--- 350 (460)
T KOG0285|consen 278 NPVASVMCQPTDP-QVITGSHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLPEG--- 350 (460)
T ss_pred CcceeEEeecCCC-ceEEecCCceEEEeeecc-CceeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCCcc---
Confidence 9999999999888 599999999999999998 77888899999999999999988 4788988885 999999875
Q ss_pred cCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
..+..+.+|+..|+.++.+.|+ ++++|++.|.+.+||..++.
T Consensus 351 -----------~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 351 -----------EFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -----------chhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCc
Confidence 4455678999999999998887 58899999999999999873
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=233.75 Aligned_cols=252 Identities=23% Similarity=0.400 Sum_probs=214.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|.+++|+|.++ +||+|+.|.++.||.-.. +.......+.||..+|.+++|+++|. +||+|+.|.+
T Consensus 59 ~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~--------~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKS 128 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGR-YLASASFDATVVIWKKED--------GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKS 128 (312)
T ss_pred cchheeeeeeecCCCc-EEEEeeccceEEEeecCC--------CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCe
Confidence 6999999999999997 999999999999999775 55777899999999999999999998 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|-||.+... ..+.+...++.|...|-.+.|+|... +|++++.|.+|++|+-..+......+++.+|...|.+++|+
T Consensus 129 VWiWe~ded---dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 129 VWIWEIDED---DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFD 204 (312)
T ss_pred EEEEEecCC---CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEec
Confidence 999999854 56678888999999999999999876 77799999999999887555566788999999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+.|. -|++++.|++++||-+.. . .-..|+.++..+.|. ++ +|++++.|+.|++|.-...... .
T Consensus 205 ~~G~-rl~s~sdD~tv~Iw~~~~-~----~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~--------p 267 (312)
T KOG0645|consen 205 NIGS-RLVSCSDDGTVSIWRLYT-D----LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDE--------P 267 (312)
T ss_pred CCCc-eEEEecCCcceEeeeecc-C----cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCC--------c
Confidence 9997 499999999999998764 1 112477899999999 54 6999999999999987642111 1
Q ss_pred CCee-eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 363 PPEL-LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 363 ~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
...+ ......|...|+++.|+|..+.+|+++++||.|++|.+.
T Consensus 268 ~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 268 SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1122 224467888999999999756689999999999999875
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.6e-35 Score=240.84 Aligned_cols=254 Identities=22% Similarity=0.405 Sum_probs=218.2
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
....+|.+.|+.++|+|+|+ +||+|+.|..|.+|+... .++....+.+|++.|..+.|.+++. .+++++
T Consensus 41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~g---------dceN~~~lkgHsgAVM~l~~~~d~s-~i~S~g 109 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYG---------DCENFWVLKGHSGAVMELHGMRDGS-HILSCG 109 (338)
T ss_pred hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccc---------cccceeeeccccceeEeeeeccCCC-EEEEec
Confidence 44568999999999999887 899999999999999765 2566678889999999999999988 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.+|+.||+++++ .+...++|..-|+.+.-+.-|..++.+++.||++++||+|+... ++++ ..+-.+++
T Consensus 110 tDk~v~~wD~~tG~------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~-~~kyqltA 179 (338)
T KOG0265|consen 110 TDKTVRGWDAETGK------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTF-ENKYQLTA 179 (338)
T ss_pred CCceEEEEecccce------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhcc-ccceeEEE
Confidence 99999999999984 45667789999999997778888999999999999999998664 3333 23668999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+.|...+. .+.+|+-|+.|++||+|+ .....++.+|..+|+.+..+|.|. ++.+-+.|.++++||++.....+
T Consensus 180 v~f~d~s~-qv~sggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~---- 252 (338)
T KOG0265|consen 180 VGFKDTSD-QVISGGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQ---- 252 (338)
T ss_pred EEeccccc-ceeeccccCceeeecccc-CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCC----
Confidence 99999888 488999999999999998 788999999999999999999997 68899999999999998754322
Q ss_pred cCCCCCeeeEEEcCCCC----CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 359 AEDGPPELLFIHGGHTS----KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+++..+.+|.. .....+|+|+++ .+.+|+.|..+++||....
T Consensus 253 ------R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 253 ------RCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ------ceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc
Confidence 44666666542 356789999999 5999999999999999874
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-35 Score=247.94 Aligned_cols=254 Identities=22% Similarity=0.386 Sum_probs=228.0
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
.+..+|..+|+.+-|+|.-. ++++++.|++|++||..+ ......+++|...+.+|+|+..|. +|++++
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~t----------g~~e~~LrGHt~sv~di~~~a~Gk-~l~tcS 169 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTET----------GELERSLRGHTDSVFDISFDASGK-YLATCS 169 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccc----------hhhhhhhhccccceeEEEEecCcc-EEEecC
Confidence 44567999999999999876 899999999999999988 344778999999999999999887 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|-.+++||..+. ..+++...+|...|.++.|-|.+.++ ++++.|.+|+.|++.++-+ +.++.+|...|..
T Consensus 170 sDl~~~LWd~~~~-----~~c~ks~~gh~h~vS~V~f~P~gd~i-lS~srD~tik~We~~tg~c---v~t~~~h~ewvr~ 240 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF-----FRCIKSLIGHEHGVSSVFFLPLGDHI-LSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRM 240 (406)
T ss_pred CccchhheeHHHH-----HHHHHHhcCcccceeeEEEEecCCee-eecccccceeEEeccccee---EEeccCchHhEEE
Confidence 9999999999743 35667788899999999999999755 5999999999999999775 8899999999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCC--------------CCcEEEEEeCCCeEEE
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------------NETILASCCLGRRLMV 344 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~--------------~~~~l~s~~~dg~i~i 344 (424)
++.+.+|. ++|+++.|.++++|-+.+ +.+...+..|+.+|-+++|.|. +.+++++++.|++|++
T Consensus 241 v~v~~DGt-i~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 241 VRVNQDGT-IIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred EEecCCee-EEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence 99999997 899999999999999998 7788899999999999999874 2258999999999999
Q ss_pred eeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 345 WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
||+.++ .+++++.||.+.|.+++|+|.|+| |+|+.+|+++++||++.....
T Consensus 319 wdv~tg--------------~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 319 WDVSTG--------------MCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred EeccCC--------------eEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccceee
Confidence 999986 789999999999999999999994 889999999999999987553
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-35 Score=235.41 Aligned_cols=249 Identities=21% Similarity=0.407 Sum_probs=211.7
Q ss_pred eEEEecCCCCcEEEEEe-------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 129 NRARYMPQNPFLIATKT-------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.++.|+|--.+.||++. ..|++.|.++... ........+ .-.+.+..++|+++..+.+++++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-------~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-------KGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCC-------CCeEEEEee-ecccceeEeeecCCCcceEEEEecCc
Confidence 46889984333444432 3689999998641 111112222 35678999999999888999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
++++||+... ..++..++.|...|.++.|++..+..+++++-|++|++|+...++. +.++.+|...|...+|
T Consensus 84 SLrl~d~~~~-----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---v~Tf~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 84 SLRLFDLTMP-----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---VQTFNGHNSCIYQAAF 155 (311)
T ss_pred eEEEeccCCC-----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc---eEeecCCccEEEEEec
Confidence 9999996433 2478889999999999999998888888999999999999988664 8889999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|..+++|++++.|+++++||+|..++.+. +..|...|.++.|+...+++|+||+.|+.|++||+++.+
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---------- 224 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---------- 224 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----------
Confidence 999999999999999999999999776665 899999999999999998999999999999999999865
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+++.+.+|.-.|..++|+|....+|+|++.|-+++||++..+
T Consensus 225 ---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 225 ---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 5588889999999999999998889999999999999999854
No 23
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-32 Score=242.56 Aligned_cols=262 Identities=19% Similarity=0.399 Sum_probs=213.3
Q ss_pred CcEEEEEEe-ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCCeeeEEecCC
Q 014472 114 GKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF 189 (424)
Q Consensus 114 ~~~~~~~~~-~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~ 189 (424)
++|+....+ .|..-|+|++|+|+|. ++|+.+.||+|.|||-.+ ...+..+. +|.+.|++|+|+|+
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~-~Fat~gsDgki~iyDGkt----------ge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKT----------GEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCC-eEEEecCCccEEEEcCCC----------ccEEEEecCCCCccccEEEEEECCC
Confidence 455555554 4888999999999987 899999999999999877 34455555 89999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcc-------------------------------------cceeeeecCCcceee
Q 014472 190 KEGHLLSGSDDAQICLWDINAAPKNKSL-------------------------------------EAMQIFKVHEGVVED 232 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~ 232 (424)
+. .|++++.|.+++|||+.+......+ .++..+.+|...|++
T Consensus 247 s~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 247 ST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred Cc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 98 6999999999999999876432221 345667889999999
Q ss_pred EEeeCCCCcEEEEEeCCCeEEEEECCCCCCC-------------------------------------------------
Q 014472 233 VAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------------------------------------- 263 (424)
Q Consensus 233 i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------------------------------------- 263 (424)
+..+|++.+++ +|+.||.|.-||..++...
T Consensus 326 Ltv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 326 LTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred EEEcCCCCEEE-eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 99999997654 9999999999998654210
Q ss_pred -------------------------------------------------------------------------CCeeEec
Q 014472 264 -------------------------------------------------------------------------KPVQSVV 270 (424)
Q Consensus 264 -------------------------------------------------------------------------~~~~~~~ 270 (424)
.......
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 1111234
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.|.++|++++++|++. +||+|...+.+.+||+.+.......+.-|...|.+++|+|+.. ++|+|+.|-.|.||++...
T Consensus 485 ~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 5888999999999998 5999999999999999874444445556999999999999996 8999999999999999874
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
. ..+....+|...|+.+.|-.+.. +++.+.|..|++|++.
T Consensus 563 ~-------------~~i~iknAH~~gVn~v~wlde~t--vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 A-------------KHIIIKNAHLGGVNSVAWLDEST--VVSSGQDANIKVWNVT 602 (603)
T ss_pred h-------------hheEeccccccCceeEEEecCce--EEeccCcceeEEeccc
Confidence 3 44666778988899999987665 7888999999999874
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=223.84 Aligned_cols=256 Identities=20% Similarity=0.383 Sum_probs=215.5
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCCeeeEEecCCCCceE
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l 194 (424)
+.+...-+|.+.+..++|+|-...+||+|+.|..|+||+.... ........+ .+|+..|.+++|+|.|+ +|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------~s~~ck~vld~~hkrsVRsvAwsp~g~-~L 76 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YL 76 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------CcEEEEEeccccchheeeeeeecCCCc-EE
Confidence 3445556899999999999972349999999999999998841 112222223 36999999999999998 89
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++||.|.++.||.-.. ..+.++..+.+|...|-+++|+++|. +||+++.|+.|-||.+...........++.|..
T Consensus 77 a~aSFD~t~~Iw~k~~----~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 77 ASASFDATVVIWKKED----GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EEeeccceEEEeecCC----CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 9999999999998654 45577889999999999999999996 678999999999999997776677888899999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.|..+.|+|... +|+++++|.+|++|+-.. .-.+++++.+|...|.+++|++.|. -|++++.|++++||.....-
T Consensus 152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred cccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccCc-
Confidence 999999999877 899999999999998662 2367899999999999999999995 59999999999999866421
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
...|...++.+.|. ++ +|+|++.|+.|++|.-...
T Consensus 229 -----------------~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 229 -----------------SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDS 263 (312)
T ss_pred -----------------chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCC
Confidence 12466789999998 43 7999999999999998754
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-34 Score=254.97 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=223.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|.++.|+|..+ .+.++-.+|.|.||+.++ ......+.-..-+|.+..|-+-.+ .+++|+.|..
T Consensus 11 ~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyet----------qtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~ 78 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYET----------QTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQ 78 (794)
T ss_pred ccCCceeeeecCCCCc-eEEEeeecCeeEEEeccc----------ceeeeeeeecccchhhheeeeccc-eEEEecCCce
Confidence 4788999999999998 566678899999999998 455666777788899999988554 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|+||+.++.. .+..+..|.+-|.+++.+|..++++ ++++|-+|++||-...- ...+++.+|...|.+++|+
T Consensus 79 IrVfnynt~e------kV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~w--a~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 79 IRVFNYNTGE------KVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEW--ACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEEEecccce------eeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCce--eeeeEEcCcceEEEEEEec
Confidence 9999998874 4677888999999999999999765 99999999999998653 4678899999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN-ETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
|...+.||+++.|++|+||.+.+ ..+..++.+|...|+++.+-+.| +.+|++|+.|.+|+|||..+.
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----------- 217 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----------- 217 (794)
T ss_pred CCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-----------
Confidence 99888999999999999999998 78899999999999999998755 337999999999999999985
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
.++.++.||...|..+.|+|.-+ +++|||+||+++||+-.+-.++.
T Consensus 218 ---~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 218 ---SCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ---HHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhh
Confidence 66778899999999999999999 89999999999999987755543
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=224.41 Aligned_cols=246 Identities=21% Similarity=0.286 Sum_probs=212.2
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-.|+++|++++|+-+|. +.++++.|.+|++|+... ...+.++.+|..+|..++.+.++. .|++|+.|.
T Consensus 14 ~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~r----------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk 81 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLR----------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGDK 81 (307)
T ss_pred cccccceEEEEEccCCC-EEEEcCCCceEEeecccc----------cceeeeecCCCceeeecccccccc-ccccCCCCc
Confidence 46899999999999997 788888999999999877 567889999999999999999887 599999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
.+.+||++++ +..+.+.+|.+.|+.++|+.... ++++|+.|.++++||.|+.. ..|++.+......|.+|..
T Consensus 82 ~v~vwDV~TG------kv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 82 AVQVWDVNTG------KVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred eEEEEEcccC------eeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEe
Confidence 9999999998 45677889999999999998765 77899999999999999887 5789988888999999998
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+. +.+++|+.||+++.||+|. +.....+ -..+|++++|++++. .+++++.|+++++.|-.++
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~-G~l~sDy--~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tG----------- 215 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRK-GTLSSDY--FGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETG----------- 215 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeec-ceeehhh--cCCcceeEEecCCCC-EEEEeeccceeeecccchh-----------
Confidence 74 3699999999999999998 5543333 356999999999996 7888999999999999886
Q ss_pred CCCeeeEEEcCCCCCcc--eEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 362 GPPELLFIHGGHTSKIS--DFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+++..+.||.+.=+ +.+++.... .+++|++||.|.+||+.....
T Consensus 216 ---klL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 ---KLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ---HHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEecccee
Confidence 66777888876544 456666667 799999999999999987643
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=252.76 Aligned_cols=253 Identities=21% Similarity=0.328 Sum_probs=215.0
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
++-.+...-+|+..|+++.|.|-..+||++|+.|+.|+||++.. ....++++.+|..+|.+++|++++. .
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~---------~~~~lrtf~gH~k~Vrd~~~s~~g~-~ 272 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD---------DRRCLRTFKGHRKPVRDASFNNCGT-S 272 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------CcceehhhhcchhhhhhhhccccCC-e
Confidence 44445556689999999999996667999999999999999976 2566888999999999999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++++.|+.|++||+++++.. ..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+++. ++.+..|-
T Consensus 273 fLS~sfD~~lKlwDtETG~~~------~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hL 342 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQVL------SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHL 342 (503)
T ss_pred eeeeecceeeeeeccccceEE------EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhh
Confidence 999999999999999998543 2232 3457899999999989999999999999999999875 77778899
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------------------------------------
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-------------------------------------------- 309 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------------------------------------- 309 (424)
+.|..+.|-+.|.+ +++.+.|++++||+.+.+- +
T Consensus 343 g~i~~i~F~~~g~r-FissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 343 GAILDITFVDEGRR-FISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hheeeeEEccCCce-EeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999999985 8899999999999987521 1
Q ss_pred --ceeecCCC--CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 310 --LHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 310 --~~~~~~~~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
...+.+|. +--..+.|||+|+ +|++|+.||.+.+||.++. .++..+.+|..++..+.|+|.
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~--------------kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT--------------KLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh--------------hhhhccccCCcceEEEEecCC
Confidence 11122333 3457789999996 7999999999999999874 567778899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEe
Q 014472 386 EDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 386 ~~~~l~s~~~d~~i~iw~ 403 (424)
.+-.+||++.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 888899999999999996
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-32 Score=238.94 Aligned_cols=257 Identities=24% Similarity=0.439 Sum_probs=216.7
Q ss_pred CCCCCCCcEEEEEE--------eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC
Q 014472 108 GFGCANGKVQIIQQ--------INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST 179 (424)
Q Consensus 108 ~~~~~~~~~~~~~~--------~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~ 179 (424)
.++...+.+++... -.|.++|.+++|+..|. +|++++.||++.+||..+ ......+.-|..
T Consensus 251 atG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~----------g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHT----------GTVKQQFEFHSA 319 (524)
T ss_pred EEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccC----------ceEEEeeeeccC
Confidence 33444555555443 24999999999999987 899999999999999977 344556777888
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
+...+.|-.+. -|++++.||.|+|+.+... .+..++.+|.++|+++.|+|.+. +|+++++|++++||....
T Consensus 320 ~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 320 PALDVDWQSND--EFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred CccceEEecCc--eEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence 87899998755 4999999999999999765 46777889999999999999986 788999999999999887
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCC--------eEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCc
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNE--------WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 331 (424)
... ...+.+|...|..+.|+|.|+ ..+++++.|++|++||+.. +.+++++..|..+|.+++|+|+++
T Consensus 391 ~~~---~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~pVysvafS~~g~- 465 (524)
T KOG0273|consen 391 SNS---VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEPVYSVAFSPNGR- 465 (524)
T ss_pred Ccc---hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCceEEEEecCCCc-
Confidence 654 677889999999999999753 3689999999999999998 899999999999999999999996
Q ss_pred EEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
++|+|+.||.|.||+.+.+ +++....+ .+.|..++|+.+|.. |..+-.|+.+++-|+.
T Consensus 466 ylAsGs~dg~V~iws~~~~--------------~l~~s~~~-~~~Ifel~Wn~~G~k-l~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG--------------KLVKSYQG-TGGIFELCWNAAGDK-LGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCCeeEeccccch--------------heeEeecC-CCeEEEEEEcCCCCE-EEEEecCCCceEEEec
Confidence 7999999999999999985 45555555 456999999999984 6666679999998874
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=260.48 Aligned_cols=260 Identities=21% Similarity=0.304 Sum_probs=222.5
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.-+|.+.|.++....+| .+||||+.|.++++|.++... ....+.....+|...|.+++++..+..+|+++|.|
T Consensus 361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc------chhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 34799999999955556 499999999999999984421 22345566789999999999998888899999999
Q ss_pred CcEEEEeCCCCCCCC---cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 201 AQICLWDINAAPKNK---SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 201 g~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+++++|++....... .+........|...|++++.+|+.. +||+|+.|++.+||++.+.. ...++.+|+..|.
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw 509 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVW 509 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce---EEEEeeCCccceE
Confidence 999999998732211 1111223456999999999999875 89999999999999999644 4888999999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
|+.|+|..+ ++||++.|++|+||.+.+ ..+++++.+|...|..+.|-.++. .|++++.||.|+||++.+.
T Consensus 510 ~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~------- 579 (775)
T KOG0319|consen 510 CVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN------- 579 (775)
T ss_pred EEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch-------
Confidence 999999776 899999999999999998 799999999999999999999997 5889999999999999986
Q ss_pred ccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.+..++.+|...|++++-++... +++||+.||.|.+|.=.+..-
T Consensus 580 -------eC~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 580 -------ECEMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred -------hhhhhhhhccceeEEEeecCccc-eeEecCCCeEEEEeecCcHHH
Confidence 66777889999999999999999 899999999999998665543
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=249.79 Aligned_cols=269 Identities=20% Similarity=0.326 Sum_probs=216.5
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
-+.++.+|...+++++++|||+ ++|||+.||.|+|||..+ ..+..++..|+..|+++.|+..+. .+++
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~S----------gfC~vTFteHts~Vt~v~f~~~g~-~lls 409 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQS----------GFCFVTFTEHTSGVTAVQFTARGN-VLLS 409 (893)
T ss_pred eeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccC----------ceEEEEeccCCCceEEEEEEecCC-EEEE
Confidence 4567789999999999999997 899999999999999987 577889999999999999999887 7999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC-eEEEEECCCCCCCCCeeEecccCCC
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++-||+|+.||+.....-++++. .......|++..|.|. ++++|+.|. .|.+|++++++. +..+.+|.++
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~-----P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgP 480 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTS-----PEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGP 480 (893)
T ss_pred eecCCeEEeeeecccceeeeecC-----CCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCee---eehhcCCCCc
Confidence 99999999999977643333221 1234567899999987 444666554 599999999885 7778899999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|.+++|+|.+. +||+|+.|.+|++||+-.....+.++. +...+..++|+|+|+ -||++..||.|.+||.....+...
T Consensus 481 Vs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 481 VSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceeecc
Confidence 99999999998 799999999999999976444555665 477899999999997 599999999999999987665433
Q ss_pred CCccCCC------CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 356 PEDAEDG------PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 356 ~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
++...+. ...............+.+++++||. .|++||..+.|+||++.++++-
T Consensus 558 IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 558 IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-CILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred ccchhhccccccccceeehhhcccCCceEEEEEcCCCC-EEEecCCcccEEEEECchhhee
Confidence 3322111 1112222233456789999999999 6888999999999999998653
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=257.39 Aligned_cols=248 Identities=25% Similarity=0.390 Sum_probs=209.2
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
|...|.++.|+|++. .+++++.++.+++|+.... .......+.+|...|.+++|+|++. ++++++.|++|
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~--------~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~ti 227 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGI--------KSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTL 227 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccc--------cchhhccccccccceeeeEECCCCc-EEEEecCCceE
Confidence 378999999999998 5999999999999999551 1024555688999999999999998 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
+|||+.... ..++.+.+|...|++++|+|++ +++++|+.|++|+|||+++++. +..+.+|...|++++|++
T Consensus 228 riwd~~~~~-----~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~---~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 228 RIWDLKDDG-----RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC---VRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEeeccCCC-----eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---EEeeeccCCceEEEEECC
Confidence 999994331 3567788999999999999999 6888999999999999999654 888899999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCC--cceeecCCCCC--EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 284 FNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
++. +|++++.|+.|++||+.+ +. ++..+..+... +++++|+|++. +++++..|+.+++||+...
T Consensus 299 d~~-~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~--------- 366 (456)
T KOG0266|consen 299 DGN-LLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSG--------- 366 (456)
T ss_pred CCC-EEEEcCCCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCC---------
Confidence 998 688999999999999998 45 45666666555 99999999996 7889999999999999976
Q ss_pred CCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 360 EDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
.......+|... +.+...++.+. ++++|+.|+.|++|++.++.
T Consensus 367 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 367 -----KSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred -----cceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccc
Confidence 334555566553 44455577888 69999999999999999753
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=251.80 Aligned_cols=258 Identities=24% Similarity=0.389 Sum_probs=221.7
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+..+.|..++|.-....++|++++.+.+++|++.+ .....+.+|...|.+|+...+|- +|+||+.|.
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~-----------~~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~ 387 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT-----------SYCQIIPGHTEAVLSLDVWSSGD-LLATGSKDK 387 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCC-----------CceEEEeCchhheeeeeecccCc-EEEEecCCc
Confidence 357789999999876667899999999999998877 22337889999999999444454 899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee------EecccCCC
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ------SVVAHQSE 275 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~ 275 (424)
++++|.++.+. ....++....+|...|.+++++..+..+|++++.|+++++|++...+...+.. ....|...
T Consensus 388 svilWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 99999995442 23345666789999999999999999999999999999999998733222222 23579999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|+|++.+|+.. ++|||+.|++.+||++.. .....++.+|+..|.++.|+|..+ +++|+|.|++|+||.+.+.
T Consensus 466 IN~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f----- 537 (775)
T KOG0319|consen 466 INCVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF----- 537 (775)
T ss_pred ccceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc-----
Confidence 99999999877 899999999999999996 788899999999999999999985 8999999999999999985
Q ss_pred CCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
.++.++.||...|..+.|-.+++ .|+|++.||.+++|+++++.+..
T Consensus 538 ---------SClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 538 ---------SCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred ---------eeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhh
Confidence 77889999999999999999999 69999999999999999987654
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.5e-34 Score=237.48 Aligned_cols=251 Identities=22% Similarity=0.397 Sum_probs=213.2
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
...+|.+.|.|+.|.. .++++|++|.+|+|||.++ ..++.++.+|...|..+.|+. +++++++.
T Consensus 232 ~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------ge~l~tlihHceaVLhlrf~n---g~mvtcSk 295 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSK 295 (499)
T ss_pred hhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------CchhhHHhhhcceeEEEEEeC---CEEEEecC
Confidence 3468999999999964 4999999999999999998 677888999999999999974 48999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.++.+||+.... .+.....+.+|...|+.+.|+. + ++++++.|.+|++|++.+... +.++.+|...|.|+
T Consensus 296 DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~ef---vRtl~gHkRGIACl 366 (499)
T KOG0281|consen 296 DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTCEF---VRTLNGHKRGIACL 366 (499)
T ss_pred CceeEEEeccCch---HHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEEEEeccceee---ehhhhcccccceeh
Confidence 9999999998763 4455677889999999999974 3 677999999999999999775 77888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.+. ++ ++++|+.|.+|++||+.. +.++..+++|+.-|.++.|... -+++|+.||+|+|||+..........
T Consensus 367 QYr--~r-lvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~-- 437 (499)
T KOG0281|consen 367 QYR--DR-LVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPA-- 437 (499)
T ss_pred hcc--Ce-EEEecCCCceEEEEeccc-cHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccc--
Confidence 886 44 899999999999999998 8999999999999999999753 48899999999999998865433221
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
...++.....|.+.|..+.|.. . .|++++.|.+|.|||+..+.-.
T Consensus 438 ---~~~Cl~~lv~hsgRVFrLQFD~--f-qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 ---STLCLRTLVEHSGRVFRLQFDE--F-QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ---cchHHHhhhhccceeEEEeecc--e-EEEeccCCCeEEEEEcCCCCcc
Confidence 1235566677888999999963 3 6888899999999999877543
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-33 Score=233.94 Aligned_cols=246 Identities=22% Similarity=0.383 Sum_probs=219.6
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.-+|...|..|+|+..|. ++|+++.|-.+.+||... ....+..+.+|...|.+++|-|.|. ++++++.|
T Consensus 146 LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~---------~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD 214 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDT---------FFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRD 214 (406)
T ss_pred hhccccceeEEEEecCcc-EEEecCCccchhheeHHH---------HHHHHHHhcCcccceeeEEEEecCC-eeeecccc
Confidence 447999999999999886 899999999999999986 1455677889999999999999986 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
.+|+.|++.++ .++..+.+|+..|..++.+.+|. ++|+++.|.+|++|-+.++++ ...+..|..+|.|++
T Consensus 215 ~tik~We~~tg------~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~---k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 215 NTIKAWECDTG------YCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC---KAELREHEHPVECIA 284 (406)
T ss_pred cceeEEecccc------eeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchh---hhhhhccccceEEEE
Confidence 99999999888 45777889999999999999985 899999999999999998765 556678999999999
Q ss_pred ecCC--------------CCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEee
Q 014472 281 FNPF--------------NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 281 ~~~~--------------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
|.|. +..++++++.|++|++||+.+ +.++.++.+|...|..++|+|.|+ +|+++..|+++++||
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWD 362 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEE
Confidence 9874 113799999999999999998 899999999999999999999996 799999999999999
Q ss_pred CCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
+++. ++..+...|..-++++.|+.+.+ .++||+-|..+++|..
T Consensus 363 l~~~--------------~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 363 LKNL--------------QCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eccc--------------eeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 9986 55677778999999999999999 6999999999999964
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=225.25 Aligned_cols=247 Identities=20% Similarity=0.360 Sum_probs=204.2
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+.....|.+.|.+++.+|+. +++|||+.|..-.||++.+ ......+.+|+..|+++.|+.++. +||+|
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~----------ge~~~eltgHKDSVt~~~Fshdgt-lLATG 124 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST----------GEFAGELTGHKDSVTCCSFSHDGT-LLATG 124 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC----------CcceeEecCCCCceEEEEEccCce-EEEec
Confidence 34456899999999999955 5999999999999999998 335678899999999999999998 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+.+|.|+||...++.... .+..--..|.-+.|+|.+. +|++|+.||.+-+|.+.+.. ..+.+.+|..+++
T Consensus 125 dmsG~v~v~~~stg~~~~------~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQW------KLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCT 194 (399)
T ss_pred CCCccEEEEEcccCceEE------EeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc---eeeEecCCCCCcc
Confidence 999999999998874322 2223456788899999775 67799999999999998854 3677889999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc-----------------------------------------------
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTAL----------------------------------------------- 310 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------------------------- 310 (424)
+-.|.|+|++ +++|..||+|++|++.+ ++++
T Consensus 195 ~G~f~pdGKr-~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 195 CGEFIPDGKR-ILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred cccccCCCce-EEEEecCceEEEEecCC-CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 9999999985 88999999999999986 3331
Q ss_pred ------------------------------------------------eeecCCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 014472 311 ------------------------------------------------HTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 311 ------------------------------------------------~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
+....|..+|+.+.|-+ .. +|++++.+|.|
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v 350 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TD-YLLTACANGKV 350 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cc-hheeeccCceE
Confidence 11123556677777776 32 46677777777
Q ss_pred EEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
++||.+++ ++++.+.||...|.+++++|+.+ +++|+|.|+..+||++.
T Consensus 351 ~~wDaRtG--------------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 351 RQWDARTG--------------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred Eeeecccc--------------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 77777775 78999999999999999999999 89999999999999875
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-32 Score=216.09 Aligned_cols=245 Identities=18% Similarity=0.302 Sum_probs=202.2
Q ss_pred CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC
Q 014472 136 QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK 215 (424)
Q Consensus 136 ~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 215 (424)
+.+-+||+++.|.+|++|...+ ..+..+++...+.|..|...|++. .|++++. ..|++||++++..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~t----------G~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np-- 73 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALT----------GICSRTIQHPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNP-- 73 (311)
T ss_pred CCceEEEeccCcceeeeeehhc----------CeEEEEEecCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCC--
Confidence 3456999999999999999988 577788887778899999999887 5777665 6899999998754
Q ss_pred cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCC
Q 014472 216 SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 216 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d 295 (424)
.++..+.+|...|+.+.|..+|+.+ ++|++||+++|||+|...+ +....|.++|+++..+|+.. -|++|..+
T Consensus 74 --~Pv~t~e~h~kNVtaVgF~~dgrWM-yTgseDgt~kIWdlR~~~~----qR~~~~~spVn~vvlhpnQt-eLis~dqs 145 (311)
T KOG0315|consen 74 --NPVATFEGHTKNVTAVGFQCDGRWM-YTGSEDGTVKIWDLRSLSC----QRNYQHNSPVNTVVLHPNQT-ELISGDQS 145 (311)
T ss_pred --CceeEEeccCCceEEEEEeecCeEE-EecCCCceEEEEeccCccc----chhccCCCCcceEEecCCcc-eEEeecCC
Confidence 3678899999999999999999865 5999999999999999654 33345789999999999776 58899999
Q ss_pred CcEEEEECCCCCCccee-ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC
Q 014472 296 KTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 374 (424)
|.|++||++. ..+... +.....+|.++...|+|. +|+++...|+..+|++-..... .+.+++..++.|.
T Consensus 146 g~irvWDl~~-~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~--------s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 146 GNIRVWDLGE-NSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTA--------SELEPVHKFQAHN 215 (311)
T ss_pred CcEEEEEccC-CccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCcc--------ccceEhhheeccc
Confidence 9999999997 333322 333457899999999996 7989999999999999874322 2236677788999
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 014472 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 414 (424)
+.+..+.+||+++ .|+++|.|.+++||+..+- ++-+..
T Consensus 216 ~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~-~kle~~ 253 (311)
T KOG0315|consen 216 GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF-FKLELV 253 (311)
T ss_pred ceEEEEEECCCCc-EEEeecCCceEEEEecCCc-eeeEEE
Confidence 9999999999999 5999999999999999877 444333
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-33 Score=257.18 Aligned_cols=247 Identities=22% Similarity=0.447 Sum_probs=215.9
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....|..++|+|..+ .+.++-.+|.|++||+.- ...+..+..|.++|.+++|+|..+ ++++|+.|..|
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM----------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykI 75 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM----------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKI 75 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh----------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEE
Confidence 456788999999998 788888999999999987 566778899999999999999988 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
+||+..+. +++..+.+|-+-|..+.|++.-+.++ ++++|.+|+||+..++++ +..+.+|...|.|..|+|
T Consensus 76 kVWnYk~r------rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~---iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 76 KVWNYKTR------RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKC---IAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred EEEecccc------eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCce---EEEEecCceEEEeeccCC
Confidence 99999776 45677789999999999999999765 999999999999999665 889999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCC----------------------------cceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 284 FNEWILATGSTDKTVKLFDLRKIST----------------------------ALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~----------------------------~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
... ++++++-|-+|+|||+....+ ..+.+.+|...|+-++|+|.-+ ++++
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS 223 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS 223 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence 877 799999999999999853210 1345678999999999999997 8999
Q ss_pred EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
|+.|..|++|.++..+. =-+-+.+||.+.|.++-|+|... +|+|.|+|++|+|||+...
T Consensus 224 G~DDRqVKlWrmnetKa------------WEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKA------------WEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cCCcceeeEEEeccccc------------eeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc
Confidence 99999999999975321 12345689999999999999888 8999999999999999875
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5e-34 Score=239.14 Aligned_cols=236 Identities=19% Similarity=0.361 Sum_probs=205.4
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....|+|+.+.. . .+++|..|.+|+|||.+. ......+.||++.|.|+.|.. .++++|+.|.+|
T Consensus 196 ~skgVYClQYDD--~-kiVSGlrDnTikiWD~n~----------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--E-KIVSGLRDNTIKIWDKNS----------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEecc--h-hhhcccccCceEEecccc----------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceE
Confidence 346899999853 2 699999999999999987 566778999999999999964 389999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
++||++++ .++..+-.|...|..+.|+. .++++++.|.++.+||+..+........+.+|...|+.+.|+.
T Consensus 260 rvWDv~tg------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 260 RVWDVNTG------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred EEEeccCC------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 99999988 45666778999999999984 2567999999999999998775445566789999999999984
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
+ ++++++.|.+|++|++.+ .+.+.++.+|...|.|+.+. + .++++|+.|.+|++||+..+
T Consensus 331 --k-yIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G------------- 390 (499)
T KOG0281|consen 331 --K-YIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECG------------- 390 (499)
T ss_pred --c-eEEEecCCceEEEEeccc-eeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEecccc-------------
Confidence 3 699999999999999998 89999999999999999885 4 48999999999999999987
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
.+++.+.||..-|.++.|... -|++|+.||.|+|||+..+.
T Consensus 391 -~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 391 -ACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred -HHHHHHhchHHhhhheeecCc---eeeeccccceEEEEeccccc
Confidence 668888999999999999743 59999999999999998763
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.7e-31 Score=266.94 Aligned_cols=260 Identities=20% Similarity=0.299 Sum_probs=207.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|.+++|+|++. +||+|+.|+.|+||++........ ....+...+. +...+.+++|++....+|++++.||+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc--ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4899999999999886 899999999999999864211100 1112233343 44679999999875568999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|++||+.++ +.+..+.+|...|++++|+|.+..+|++|+.||.|++||++++.. +..+.. ...+.++.|+
T Consensus 557 v~lWd~~~~------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---~~~~~~-~~~v~~v~~~ 626 (793)
T PLN00181 557 VQVWDVARS------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---IGTIKT-KANICCVQFP 626 (793)
T ss_pred EEEEECCCC------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---EEEEec-CCCeEEEEEe
Confidence 999999765 345667789999999999985556788999999999999998654 555544 4679999996
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+....+|++|+.||.|++||+++...++..+.+|...|.++.|. ++. +|++++.|+.|+|||++..... .
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~--------~ 696 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG--------I 696 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc--------c
Confidence 65444799999999999999998555778888999999999997 443 7899999999999999753210 0
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
...++..+.+|...+..++|+|++. +|++|+.|+.|++|+....
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCC
Confidence 1245677889999999999999998 7999999999999997654
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=264.29 Aligned_cols=259 Identities=20% Similarity=0.276 Sum_probs=203.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+.+...|.+++|+|....+||+++.||.|+|||+.+ ......+.+|...|++++|+|.+..+|++|+.||
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 445678999999987666899999999999999986 3556778899999999999985445899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
.|++||++++. .+..+.. ...+.++.|++....+|++|+.||.|++||++.... ++..+.+|...|.+++|
T Consensus 599 ~v~iWd~~~~~------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQGV------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGHSKTVSYVRF 669 (793)
T ss_pred EEEEEECCCCc------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCCCCCEEEEEE
Confidence 99999998663 2333443 467999999766556788999999999999987542 45667789999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC-----CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKI-----STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
. ++. .|++++.|++|++||++.. ..++..+.+|...+..++|+|++. +|++|+.|+.|++|+..........
T Consensus 670 ~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 670 V-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred e-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEE
Confidence 7 455 6899999999999999852 256788999999999999999985 8999999999999998654211100
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
...... ...-.....|...|.+++|+|++. .|++|+.||.|+||++
T Consensus 747 ~~~~~~-~~~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTID-PVSGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCC-cccccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 000000 000011234566799999999999 6899999999999997
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-31 Score=239.89 Aligned_cols=321 Identities=19% Similarity=0.335 Sum_probs=236.2
Q ss_pred HhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCC
Q 014472 34 LVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCAN 113 (424)
Q Consensus 34 ~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (424)
.+|++.+.=|.-+++|.|++ ..+++|. .|-+.|+.. |.+... + -
T Consensus 89 Vlh~f~fk~~v~~i~fSPng----------~~fav~~------gn~lqiw~~--P~~~~~-----------~-------~ 132 (893)
T KOG0291|consen 89 VLHRFNFKRGVGAIKFSPNG----------KFFAVGC------GNLLQIWHA--PGEIKN-----------E-------F 132 (893)
T ss_pred eeEEEeecCccceEEECCCC----------cEEEEEe------cceeEEEec--Ccchhc-----------c-------c
Confidence 45677777888899999987 4555554 355666665 422110 1 1
Q ss_pred CcEEEEE-EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCc
Q 014472 114 GKVQIIQ-QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 114 ~~~~~~~-~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
..|...+ ..+|-..|.++.|+.|.+ +|++|+.|-.++||.++.. .......+.+|...|.+.-|..+..
T Consensus 133 ~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gsrD~s~rl~~v~~~--------k~~~~~~l~gHkd~VvacfF~~~~~- 202 (893)
T KOG0291|consen 133 NPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGSRDLSARLFGVDGN--------KNLFTYALNGHKDYVVACFFGANSL- 202 (893)
T ss_pred CcceEeeeecCCccceeEEEeccCCc-eEEeccccceEEEEEeccc--------cccceEeccCCCcceEEEEeccCcc-
Confidence 2344443 457999999999998776 9999999999999999872 2233567889999999999998776
Q ss_pred eEEEEeCCCcEEEEeCCCC------------------------CCCCcc-------------------------------
Q 014472 193 HLLSGSDDAQICLWDINAA------------------------PKNKSL------------------------------- 217 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~------------------------~~~~~~------------------------------- 217 (424)
-+++.+.||.+.+|..... +.....
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv 282 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV 282 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence 5999999999999987611 000000
Q ss_pred ---------------cceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 218 ---------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 218 ---------------~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
..++.+.-...+|..++|+..|..+...++.-|.+.||+.++... +...++|...+++++++
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLKQQGHSDRITSLAYS 359 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce---eeeccccccceeeEEEC
Confidence 111111112234455555555554433333446677777666543 45557899999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC--
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE-- 360 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-- 360 (424)
|+|+ ++|||+.||.|+|||.++ +-++.++..|++.|+.+.|+..+. .+++++.||+|+.||+.....-++...+.
T Consensus 360 pDgq-~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 360 PDGQ-LIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred CCCc-EEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 9998 799999999999999998 789999999999999999999995 78999999999999998776544332211
Q ss_pred -------C---------------------CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 361 -------D---------------------GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 361 -------~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+ ...+++-.+.||.++|.+++|+|.+. +|+|+|.|++|++|++-..
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc
Confidence 0 11345566789999999999999999 8999999999999999655
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.4e-30 Score=229.52 Aligned_cols=280 Identities=25% Similarity=0.417 Sum_probs=225.5
Q ss_pred CCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEE
Q 014472 42 WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQ 121 (424)
Q Consensus 42 ~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (424)
-|..++.|.|+. ..++.|+ .++.+.++.+.-. + .....
T Consensus 10 ~~i~~~~~~~~~----------~~l~~~~-----~~g~i~i~~~~~~--------------------------~-~~~~~ 47 (289)
T cd00200 10 GGVTCVAFSPDG----------KLLATGS-----GDGTIKVWDLETG--------------------------E-LLRTL 47 (289)
T ss_pred CCEEEEEEcCCC----------CEEEEee-----cCcEEEEEEeeCC--------------------------C-cEEEE
Confidence 457789998874 4565555 2456777766311 0 12234
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
..|...+..+.|+|++. ++++++.+|.|++|++.. ......+..|...+.++.|++++. ++++++.+|
T Consensus 48 ~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 115 (289)
T cd00200 48 KGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLET----------GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115 (289)
T ss_pred ecCCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCc----------ccceEEEeccCCcEEEEEEcCCCC-EEEEecCCC
Confidence 46888899999999885 788899999999999987 345667778999999999999855 777777799
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
.|.+||+.+. .....+..|...+.+++|+|++. ++++++.++.|++||++..+. +..+..|...+.+++|
T Consensus 116 ~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~ 185 (289)
T cd00200 116 TIKVWDVETG------KCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAF 185 (289)
T ss_pred eEEEEECCCc------EEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEE
Confidence 9999999754 23445567888999999999865 666777799999999987654 5566678889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|++. .+++++.++.|++||++. ..++..+..|...+.++.|+|++ .++++++.||.|++|++...
T Consensus 186 ~~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~----------- 251 (289)
T cd00200 186 SPDGE-KLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTG----------- 251 (289)
T ss_pred CCCcC-EEEEecCCCcEEEEECCC-CceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCc-----------
Confidence 99987 477777899999999997 67777887889999999999996 47888888999999999864
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.....+.+|...|.+++|+|+++ .|++++.|+.+++|+
T Consensus 252 ---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ---ECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred ---eeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 44555668888999999999998 689999999999996
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-31 Score=217.82 Aligned_cols=241 Identities=22% Similarity=0.407 Sum_probs=207.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+|.++|..+.|++++. .|++++.|.+|+.||..+ .+....+++|..-|.++.-+.-|..++.+++.||+
T Consensus 88 gHsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~t----------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t 156 (338)
T KOG0265|consen 88 GHSGAVMELHGMRDGS-HILSCGTDKTVRGWDAET----------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT 156 (338)
T ss_pred cccceeEeeeeccCCC-EEEEecCCceEEEEeccc----------ceeeehhccccceeeecCccccCCeEEEecCCCce
Confidence 8999999999999987 788889999999999998 57788899999999999976667778899999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+++||+++....+.+ . ..-+++++.|...+..++ +|+-|+.|++||+|.... ...+.+|..+|+.|..+
T Consensus 157 ~kl~D~R~k~~~~t~------~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~---~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 157 LKLWDIRKKEAIKTF------E-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDG---LYTLSGHADTITGLSLS 225 (338)
T ss_pred EEEEeecccchhhcc------c-cceeEEEEEeccccccee-eccccCceeeeccccCcc---eEEeecccCceeeEEec
Confidence 999999876433222 2 356789999998888776 999999999999999775 88889999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCC---CCcceeecCCC----CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHK----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|.|.+ +.+-+.|.++++||+|.. .+++..+.+|. .....++|+|++. .+.+|+.|..+.+||....
T Consensus 226 ~~gs~-llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r----- 298 (338)
T KOG0265|consen 226 RYGSF-LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSR----- 298 (338)
T ss_pred cCCCc-cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccc-----
Confidence 99985 889999999999999863 23466677654 3467889999996 6889999999999999764
Q ss_pred CCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 356 PEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
.+++.+.||.+.|+.++|+|..+ +|.+++.|.+|.+=
T Consensus 299 ---------~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~lg 335 (338)
T KOG0265|consen 299 ---------RILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYLG 335 (338)
T ss_pred ---------cEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEee
Confidence 67889999999999999999999 89999999998863
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-31 Score=215.57 Aligned_cols=271 Identities=17% Similarity=0.286 Sum_probs=221.2
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
+...+|..+++.|+|+.+|. +|.+++.|.++.||-... ...+.++.+|.+.|++++...+.. ++++|+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~n----------GerlGty~GHtGavW~~Did~~s~-~liTGS 71 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLN----------GERLGTYDGHTGAVWCCDIDWDSK-HLITGS 71 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecC----------CceeeeecCCCceEEEEEecCCcc-eeeecc
Confidence 34568999999999999987 899999999999998755 466788999999999999988776 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEE----eCCCeEEEEECCCCC----CCCCeeEec
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLLIWDLRTPS----VSKPVQSVV 270 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~----~~dg~i~i~d~~~~~----~~~~~~~~~ 270 (424)
.|.++++||+.+++. +..+. ...+|..+.|++++..++++. +..+.|.++|++... ...|+..+.
T Consensus 72 AD~t~kLWDv~tGk~------la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQ------LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ccceeEEEEcCCCcE------EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999999999999854 33333 467899999999997555433 235679999999543 234677788
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+.+.++.+-|.|.++ .|++|..||.|.+||+++..+.+.....|+..|+.++++++.. ++++++.|.+-++||+++.
T Consensus 145 t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeeccce
Confidence 8889999999999998 5889999999999999996677888889999999999999995 8999999999999999876
Q ss_pred CcccCCCccC-------------------------------CCCC----------eeeEEEcCCCCCcceEEeCCCCCcE
Q 014472 351 DEEQTPEDAE-------------------------------DGPP----------ELLFIHGGHTSKISDFSWNPCEDWV 389 (424)
Q Consensus 351 ~~~~~~~~~~-------------------------------~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~ 389 (424)
...+...... .+.. +-+....||-++|++++|+|+|+ .
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-s 301 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-S 301 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-c
Confidence 5433221100 0000 11234468999999999999999 7
Q ss_pred EEEEeCCCcEEEEecCCCCCCC
Q 014472 390 ISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 390 l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
.+||++||.|++..+..+.++.
T Consensus 302 YsSGGEDG~VR~h~Fd~~YF~~ 323 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDSNYFDF 323 (327)
T ss_pred cccCCCCceEEEEEeccchhhe
Confidence 9999999999999998887654
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-31 Score=229.99 Aligned_cols=255 Identities=19% Similarity=0.352 Sum_probs=206.8
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
..|.++|.-+.|+++|+ +||+++.|.+..||.+... ...+...++.+|..+|..+.|+|+.. +|++|+.|.
T Consensus 221 ~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d-------~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e 291 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYD-------VHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDE 291 (519)
T ss_pred hhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecC-------cceeeeeeeecccCceEEEEECCCCC-eEEecCchH
Confidence 36999999999999997 8999999999999998762 23455778999999999999999888 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC------------------
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------ 263 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------ 263 (424)
.+.+||+.++.....+. .++...+.+++|.|++.. |++|+.|+.+..||+......
T Consensus 292 ~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYP-----SGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred heeeccCCcchhhhhcc-----cCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 99999999986533221 235678999999999976 569999999999998643110
Q ss_pred ----------CCeeE----------ecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCC--EE
Q 014472 264 ----------KPVQS----------VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VF 321 (424)
Q Consensus 264 ----------~~~~~----------~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~ 321 (424)
+.+.. +..-..+|++++.+.++. ++++.-.+..+++||+.. ...+..+.+|+.. +.
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHFII 443 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch-hhHHHHhhcccccceEE
Confidence 00000 112245788888888887 466677788899999985 6778888888754 55
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
.-+|--....++++|+.|+.|+||+..++ .++.++.||...|++++|+|..+.++||+|+||+|+|
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sg--------------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISG--------------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCC--------------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 56676655568999999999999999886 7789999999999999999999999999999999999
Q ss_pred EecCCC
Q 014472 402 WQMAEN 407 (424)
Q Consensus 402 w~~~~~ 407 (424)
|.+...
T Consensus 510 Wg~~~~ 515 (519)
T KOG0293|consen 510 WGPSDN 515 (519)
T ss_pred ecCCcc
Confidence 998754
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-31 Score=249.62 Aligned_cols=247 Identities=25% Similarity=0.433 Sum_probs=209.0
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|...|++++|+|++. ++++|+.|++|+|||+.. ......++.+|...|++++|+|.+ +++++|+.|+
T Consensus 200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~---------~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~ 268 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD---------DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDG 268 (456)
T ss_pred cccccceeeeEECCCCc-EEEEecCCceEEEeeccC---------CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCC
Confidence 57999999999999997 899999999999999943 245678899999999999999999 5899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC--CeeEE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCL 279 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i 279 (424)
+|+|||++++ ++...+.+|.+.|++++|++++. ++++++.|+.|++||+.++... ....+..+.. +++++
T Consensus 269 tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSV 340 (456)
T ss_pred cEEEEeccCC------eEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEE
Confidence 9999999885 46778889999999999999997 5568899999999999997721 1334444443 59999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCC---EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
+|+|++. ++++++.|+.+++||++. ...+..+.+|... +.+...++.+. ++++|+.|+.|.+|++.++
T Consensus 341 ~fsp~~~-~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~------ 411 (456)
T KOG0266|consen 341 QFSPNGK-YLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSG------ 411 (456)
T ss_pred EECCCCc-EEEEecCCCeEEEEEccC-CcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCcc------
Confidence 9999998 588999999999999998 6778888888775 33444566775 7999999999999999874
Q ss_pred CccCCCCCeeeEEEcCC-CCCcceEEeCCCCCcEEEEEe--CCCcEEEEecC
Q 014472 357 EDAEDGPPELLFIHGGH-TSKISDFSWNPCEDWVISSVA--EDNILQIWQMA 405 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~d~~i~iw~~~ 405 (424)
..+..+.+| ...+..++|+|... ++++++ .|+.+++|...
T Consensus 412 --------~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 --------GILQRLEGHSKAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred --------chhhhhcCCCCCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 445566788 88899999999999 788887 79999999864
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-31 Score=245.49 Aligned_cols=260 Identities=19% Similarity=0.317 Sum_probs=201.7
Q ss_pred EEEEEe--ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCC---------------------------CC-C----
Q 014472 117 QIIQQI--NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---------------------------SK-P---- 162 (424)
Q Consensus 117 ~~~~~~--~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~---------------------------~~-~---- 162 (424)
...+.+ .|.+.|.++.|+++|+ +||+|+.||.|+||.+...+ .. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 344444 4999999999999997 89999999999999986600 00 0
Q ss_pred C------------------CCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014472 163 P------------------LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 163 ~------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
. ..-..+|...+.||.+.|.+|.|+.++ +|++++.|.+|++|++.... ++..+.
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~------CL~~F~ 407 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE------CLKVFS 407 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc------eeeEEe
Confidence 0 011234667788999999999999743 79999999999999998663 455555
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~ 304 (424)
|..-|+||+|+|.+.+.|++|+-||.|+||++...+ +.....-..-|++++|.|+|+ ..++|+.+|.+++|+.+
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTE 481 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEcc
Confidence 999999999999888888999999999999998765 333444458899999999998 58899999999999998
Q ss_pred CCCCcceeec--CC------CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC-
Q 014472 305 KISTALHTFD--SH------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS- 375 (424)
Q Consensus 305 ~~~~~~~~~~--~~------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 375 (424)
.. +....+. .| ...|+.+.|.|....-+++.+.|..|+|||++.. .++..+.|+..
T Consensus 482 ~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--------------~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 482 GL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--------------DLVHKFKGFRNT 546 (712)
T ss_pred CC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch--------------hhhhhhcccccC
Confidence 63 3322221 11 2379999999877665777788999999999764 34444454432
Q ss_pred -CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 376 -KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 -~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.-....|+.+|++ |+++++|..|+||++...
T Consensus 547 ~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 547 SSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 2356789999995 888999999999998544
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.4e-31 Score=223.87 Aligned_cols=258 Identities=23% Similarity=0.435 Sum_probs=211.8
Q ss_pred EEEeccCCceeEEEecCCCC--cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 119 IQQINHDGEVNRARYMPQNP--FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~--~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
....+|.++|.+++|...++ ..|++++.|.++++|.++...+. ........||...|-+++..+++. ++++
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~------~~~~~~~~GHk~~V~sVsv~~sgt-r~~S 210 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK------VKALKVCRGHKRSVDSVSVDSSGT-RFCS 210 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh------hhHHhHhcccccceeEEEecCCCC-eEEe
Confidence 44568999999888865433 36999999999999999873322 223334459999999999999888 7999
Q ss_pred EeCCCcEEEEeCCCCC-------------------CCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC
Q 014472 197 GSDDAQICLWDINAAP-------------------KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
|+.|.+|.+|+..... ....-.++..+.+|..+|.++.|++.+ .+.+++.|.+|+.||+
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDL 288 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEe
Confidence 9999999999933211 012225677789999999999999843 5669999999999999
Q ss_pred CCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--CcceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 258 RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
.++.. +..+. ....++|++.+|... +||+|+.|..|++||.|+.. .+.+++.+|++.|.++.|+|...++|++
T Consensus 289 etg~~---~~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 289 ETGGL---KSTLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ecccc---eeeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 99875 33332 367899999999776 89999999999999999854 3567788999999999999999999999
Q ss_pred EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
++.|+++++||++... ..++.+.+|...|.++.|+..+ +|++||.|+.|+|+.-.
T Consensus 364 ~S~D~t~klWDvRS~k-------------~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK-------------APLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EecCCeEEEEEeccCC-------------CcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 9999999999999843 4788999999999999998654 69999999999998754
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.8e-30 Score=228.73 Aligned_cols=246 Identities=27% Similarity=0.451 Sum_probs=207.8
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|++++|+|++. +|++++.+|.|++|++.. ......+..|...+..+.|+|++. +|++++.||.
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~ 74 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLET----------GELLRTLKGHTGPVRDVAASADGT-YLASGSSDKT 74 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeC----------CCcEEEEecCCcceeEEEECCCCC-EEEEEcCCCe
Confidence 6999999999999876 788999999999999987 335667788999999999999886 7999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|++|++..+. ....+..|...+.++.|++++. ++++++.+|.|.+||+++.+. ...+..|...+.+++|+
T Consensus 75 i~i~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 75 IRLWDLETGE------CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC---LTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEEcCccc------ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE---EEEeccCCCcEEEEEEc
Confidence 9999998652 3445667888999999999854 666777799999999986543 56666788999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|++. ++++++.++.|++||++. ..++..+..|...+.++.|+|++. .+++++.|+.|++||++..
T Consensus 145 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~------------ 209 (289)
T cd00200 145 PDGT-FVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTG------------ 209 (289)
T ss_pred CcCC-EEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCC------------
Confidence 9876 677887799999999997 677888888999999999999996 5777778999999999864
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
..+..+..|...+.+++|+|++. ++++++.||.|++|++.++.
T Consensus 210 --~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 210 --KCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred --ceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCce
Confidence 33445557788999999999977 78888889999999998653
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-30 Score=226.48 Aligned_cols=221 Identities=22% Similarity=0.429 Sum_probs=195.0
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+..+|...-++++|+++....+++|+.|+.|++||+....... ....+...+.+|...|..++|++....+|++++.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC---ccccceEEeecCCcceehhhccccchhhheeecC
Confidence 4568888888999999988899999999999999998754431 2356677889999999999999999989999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|+.+.|||+++. ..++.....+|.+.|+|++|+|.+.++||+|+.|++|.+||+|+... ++..+.+|...|.+|
T Consensus 249 d~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 249 DGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQV 322 (422)
T ss_pred CCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEE
Confidence 999999999973 11345566789999999999999999999999999999999998764 789999999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCC-------------cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEee
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKIST-------------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
.|+|....+||+++.|+.+.+||+...+. ++....+|...|..+.|+|+.+.++++.+.|+.+.||+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999999999999999999999975432 34667789999999999999999999999999999999
Q ss_pred CCC
Q 014472 347 LSR 349 (424)
Q Consensus 347 ~~~ 349 (424)
+..
T Consensus 403 ~s~ 405 (422)
T KOG0264|consen 403 MAE 405 (422)
T ss_pred ccc
Confidence 873
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-30 Score=217.05 Aligned_cols=263 Identities=18% Similarity=0.316 Sum_probs=220.1
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCc
Q 014472 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
.+++++ ..-+|-..|..+++++-.+ ++.+++.|+.|+.||+.. .+.++.+.+|-..|++|+.+|.-.
T Consensus 182 tg~Lkl-tltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~----------nkvIR~YhGHlS~V~~L~lhPTld- 248 (460)
T KOG0285|consen 182 TGQLKL-TLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY----------NKVIRHYHGHLSGVYCLDLHPTLD- 248 (460)
T ss_pred cCeEEE-eecchhheeeeeeecccCc-eEEEecCCCeeEEEechh----------hhhHHHhccccceeEEEeccccce-
Confidence 445543 3447999999999999988 788889999999999987 567788999999999999999877
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
+|++|+.|.+++|||+++. ..+..+.+|..+|..+.+.|.++.++ +|+.|++|++||++.++. ...+..|
T Consensus 249 vl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt---~~tlt~h 318 (460)
T KOG0285|consen 249 VLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT---MITLTHH 318 (460)
T ss_pred eEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce---eEeeecc
Confidence 8999999999999999876 35677889999999999999888765 999999999999999775 6777889
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+..|.+++.+|... +||+++.| .|+-|++.. +..+..+.+|+.-|++++.+.++ ++++|+..|.+.+||.+++..
T Consensus 319 kksvral~lhP~e~-~fASas~d-nik~w~~p~-g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 319 KKSVRALCLHPKEN-LFASASPD-NIKQWKLPE-GEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cceeeEEecCCchh-hhhccCCc-cceeccCCc-cchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcc
Confidence 99999999999765 79998877 599999998 77788899999999999999887 689999999999999998876
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
.|...... .|..+ .....|+..+|...|. .|++|..|.+|++|.-.+..-+
T Consensus 394 yQ~~~t~v-qpGSl-----~sEagI~as~fDktg~-rlit~eadKtIk~~keDe~aT~ 444 (460)
T KOG0285|consen 394 YQRGQTIV-QPGSL-----ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDEHATE 444 (460)
T ss_pred cccccccc-cCCcc-----ccccceeEEeecccCc-eEEeccCCcceEEEecccccCc
Confidence 54332110 01011 1234689999999998 6899999999999987665443
No 52
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.9e-30 Score=241.72 Aligned_cols=266 Identities=16% Similarity=0.227 Sum_probs=192.1
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC--CCCC-CCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--LDGA-CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~--~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
|-..|+....++++.+ +++++.+.....|+......... ..+. ......+.+|.+.|.+++|+|.+..+|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3345555666666553 44455566666666433110000 0010 011234789999999999999444489999999
Q ss_pred CcEEEEeCCCCCCC-CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 201 AQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|+|++||+...... ....++..+.+|...|.+++|+|.+..+|++++.|++|+|||++++.. +..+..|...|.++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~~l~~h~~~V~sl 174 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VEVIKCHSDQITSL 174 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EEEEcCCCCceEEE
Confidence 99999999765321 112345678899999999999998777889999999999999998653 66778899999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCC-EEEEEEcCCCCcEEEEE---eCCCeEEEeeCCCCCcccC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE-VFQVGWNPKNETILASC---CLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~~l~s~---~~dg~i~iwd~~~~~~~~~ 355 (424)
+|+|++. +|++|+.|+.|++||+++ +..+..+.+|.+. +..+.|.+++..++.+| +.|+.|++||++....
T Consensus 175 a~spdG~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--- 249 (493)
T PTZ00421 175 EWNLDGS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--- 249 (493)
T ss_pred EEECCCC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC---
Confidence 9999987 799999999999999998 6778888888765 45788999886544444 2478999999987532
Q ss_pred CCccCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCCCC
Q 014472 356 PEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAENIY 409 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~ 409 (424)
.+..... +...+....|++++. +|++++ .|+.|++|++.++.+
T Consensus 250 ----------p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 250 ----------PYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred ----------ceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCce
Confidence 1222222 233455677899999 565555 699999999988753
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-30 Score=236.52 Aligned_cols=257 Identities=23% Similarity=0.450 Sum_probs=218.2
Q ss_pred CCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-CCCCeeeEEecC
Q 014472 110 GCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-HSTEGYGLSWSK 188 (424)
Q Consensus 110 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~ 188 (424)
....+++..+..+. .+.|+++.|+++|. +||+|..+|.|.|||... .+....+.+ |...|-+++|+.
T Consensus 203 ~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~----------~k~~~~~~~~h~~rvg~laW~~ 270 (484)
T KOG0305|consen 203 SASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKE----------QKKTRTLRGSHASRVGSLAWNS 270 (484)
T ss_pred ecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhh----------ccccccccCCcCceeEEEeccC
Confidence 34456665555555 89999999999997 899999999999999987 455566777 999999999983
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeE
Q 014472 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS 268 (424)
Q Consensus 189 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~ 268 (424)
..+.+|+.||.|..+|++..+... ..+.+|...|..++|++++. .+|+|+.|+.+.|||..... +...
T Consensus 271 ---~~lssGsr~~~I~~~dvR~~~~~~-----~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~---p~~~ 338 (484)
T KOG0305|consen 271 ---SVLSSGSRDGKILNHDVRISQHVV-----STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE---PKFT 338 (484)
T ss_pred ---ceEEEecCCCcEEEEEEecchhhh-----hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc---ccEE
Confidence 369999999999999998775422 23778999999999999986 67899999999999996644 5778
Q ss_pred ecccCCCeeEEEecCCCCeEEEEEe--CCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEe
Q 014472 269 VVAHQSEVNCLAFNPFNEWILATGS--TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC-LGRRLMVW 345 (424)
Q Consensus 269 ~~~~~~~v~~i~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~iw 345 (424)
+..|...|.+++|+|....+||+|+ .|+.|++||..+ +..+..+.. .+.|.+|.|++..+-++.+-+ .++.|.||
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 8899999999999999988999977 489999999997 777777765 789999999998865665544 46789999
Q ss_pred eCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+..+. ..+..+.+|...|..++++|+|. .+++|+.|.++++|++-..
T Consensus 417 ~~ps~--------------~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 417 KYPSM--------------KLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecccc--------------ceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence 99874 56778899999999999999999 6999999999999999775
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=232.19 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=210.8
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.....|.+++|+|..++-+|+.+. -.|.||+..+ .....++......+++++|..+|. +|++|+..|.
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~----------~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~ 91 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT----------RSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGH 91 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecch----------hhhhhhHHhhccceeEEEeecCCe-EEEccCCcCc
Confidence 446799999999998887887664 5799999887 455566777888999999999998 8999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|+|||+.+. ..+..+.+|+.++..+.|+|.+..+|++|++|+.+++||+.+... ...+.+|+..|.|.+|+
T Consensus 92 V~vfD~k~r------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 92 VKVFDMKSR------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEEeccccH------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccc
Confidence 999996542 346678899999999999999999999999999999999998663 55778999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|.+++++++|++||.|++||+|.....+..+. |..+|-++.+-|.|. ++++++. ..+++||+..+.
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGG----------- 228 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCc-----------
Confidence 99999999999999999999999656666665 799999999999985 6777664 469999999765
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+++.....|...|+++++..++. .|+|+|-|+.+++|++.+
T Consensus 229 --qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 229 --QLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred --eehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccc
Confidence 55555566999999999999998 689999999999999654
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.2e-30 Score=221.26 Aligned_cols=256 Identities=21% Similarity=0.351 Sum_probs=213.9
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC--ceEEEE
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLSG 197 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~ 197 (424)
.-+.|.+-|.++...+ ..|.+|++||.++|||... +....+.+|.++|.+++|.-.+. ..|+++
T Consensus 100 ~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa 165 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA 165 (423)
T ss_pred ccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEEe
Confidence 3456888888888773 4799999999999999875 66788999999999999865433 259999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC-----------------
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP----------------- 260 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~----------------- 260 (424)
+.|.++++|..+.+... .+.+....+|...|.+++..+++. .|++|+-|.+|.||+..+.
T Consensus 166 s~Dqtl~Lw~~~~~~~~--~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENK--VKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred cCCceEEEEEecCchhh--hhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999876432 234455569999999999999986 6679999999999993211
Q ss_pred -----CCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 261 -----SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 261 -----~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
....|+..+.+|..+|.++.|++ .. .+++++.|.+|+.||+.. +..+.++.. +..++++..+|... +|++
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~-v~yS~SwDHTIk~WDlet-g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~ 317 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-AT-VIYSVSWDHTIKVWDLET-GGLKSTLTT-NKSLNCISYSPLSK-LLAS 317 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC-CC-ceEeecccceEEEEEeec-ccceeeeec-CcceeEeecccccc-eeee
Confidence 12356778899999999999998 33 689999999999999998 666666665 67899999999875 8999
Q ss_pred EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
|+.|..|++||.+++.. ....+.+.||.+.|.++.|+|...++|++++.||++++||+.+..
T Consensus 318 gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred cCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999999999998642 255678899999999999999999999999999999999998753
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-30 Score=242.83 Aligned_cols=249 Identities=20% Similarity=0.348 Sum_probs=210.9
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.-.|.++|..++|+|+.+ ++++|+.|-.|+||++.. .+++.++.||-+-|..+.|++.-+ .++++|.|
T Consensus 47 FdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~----------rrclftL~GHlDYVRt~~FHheyP-WIlSASDD 114 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT----------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDD 114 (1202)
T ss_pred hhccCCccceeeecCCCC-eEEecCCccEEEEEeccc----------ceehhhhccccceeEEeeccCCCc-eEEEccCC
Confidence 447999999999999998 999999999999999988 677889999999999999999887 79999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC--C---------------
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV--S--------------- 263 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~--~--------------- 263 (424)
.+|+||+..+. +++..+.+|...|.|.+|+|... ++++++-|.+|+|||+..-+. .
T Consensus 115 QTIrIWNwqsr------~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 115 QTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred CeEEEEeccCC------ceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 99999999877 56788999999999999999875 778999999999999863110 0
Q ss_pred ---------CCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceeecCCCCCEEEEEEcCCCCcEE
Q 014472 264 ---------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 264 ---------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l 333 (424)
...+.+.+|...|+.++|+|..+ +|++|+.|+.|++|.+...+ -.+.+..+|.+.|+++.|+|... ++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lI 265 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LI 265 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-ee
Confidence 01234578999999999999998 89999999999999987522 24567789999999999999885 78
Q ss_pred EEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
++.+.|++|+|||+... ..+.+++.....-+.++-+|..+ ++++ +.|+-+.||.+..
T Consensus 266 lSnsEDksirVwDm~kR--------------t~v~tfrrendRFW~laahP~lN-LfAA-gHDsGm~VFkleR 322 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTKR--------------TSVQTFRRENDRFWILAAHPELN-LFAA-GHDSGMIVFKLER 322 (1202)
T ss_pred EecCCCccEEEEecccc--------------cceeeeeccCCeEEEEEecCCcc-eeee-ecCCceEEEEEcc
Confidence 99999999999999875 34555555566788889999988 5655 5566688888874
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7.9e-32 Score=227.10 Aligned_cols=254 Identities=17% Similarity=0.312 Sum_probs=208.0
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..-+|.+.|.|++=+|.....+|+|+.||.|+|||+.. .....++.+|.+.|.+|++.. . .+++++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq----------R~~~~~f~AH~G~V~Gi~v~~--~-~~~tvgd 127 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ----------RECIRTFKAHEGLVRGICVTQ--T-SFFTVGD 127 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhh----------hhhhheeecccCceeeEEecc--c-ceEEecC
Confidence 34689999999999998766899999999999999988 566788999999999999986 3 5999999
Q ss_pred CCcEEEEeCCCCCC-----------------C---------------CcccceeeeecCCcceeeEEeeCCCCcEEEEEe
Q 014472 200 DAQICLWDINAAPK-----------------N---------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (424)
Q Consensus 200 dg~i~vwd~~~~~~-----------------~---------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~ 247 (424)
|.+|+.|.+..... . ....++..+.-....|.++.|+|....+|++|+
T Consensus 128 DKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 128 DKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred CcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 99999998543210 0 000234444444567889999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 248 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
.|+.|.+||+|+....+.+. ....-+.|+|+| ..+.|++|+.|..++.||+|....++..+.+|.++|.++.|||
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred cCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 99999999999977544332 245678999999 4457999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.|+ -+++||.|.+|+||..+.+.... .. +......|.++.|+.|.+ +++|||+|+.|++|.-.-
T Consensus 283 tG~-EfvsgsyDksIRIf~~~~~~SRd-----------iY--htkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 283 TGQ-EFVSGSYDKSIRIFPVNHGHSRD-----------IY--HTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred Ccc-hhccccccceEEEeecCCCcchh-----------hh--hHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 997 59999999999999998754321 11 112235699999999999 599999999999999754
No 58
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4e-30 Score=222.34 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=216.9
Q ss_pred CCcEEEEEEeccCCceeEEEecCC------CCcEEEEEecCCeEEEEeCCCCCCCCCC-----------CCCCCCcEEEe
Q 014472 113 NGKVQIIQQINHDGEVNRARYMPQ------NPFLIATKTVSAEVYVFDYSKHPSKPPL-----------DGACSPDLRLR 175 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~i~~~p~------~~~~latg~~dg~v~iwd~~~~~~~~~~-----------~~~~~~~~~~~ 175 (424)
.+.+-+..-+--+....|+.|... -.+++|.|+.+..|.|||+.-.....+. ....+......
T Consensus 161 e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~ 240 (463)
T KOG0270|consen 161 EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSAS 240 (463)
T ss_pred CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccc
Confidence 345555555555566677777542 1359999999999999998753221110 00011122244
Q ss_pred cCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEE
Q 014472 176 GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 176 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
+|+..|.+|+|+..-.++|++||.|.+|++||+.+++. ...+..|...|.++.|+|..+.++++|+.|++|.+.
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence 79999999999998888999999999999999998854 455567999999999999999999999999999999
Q ss_pred ECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
|.|........- ...+.|..++|+|...+.++++..||+++-+|+|+.++++.++++|.++|.++++++.-+.+|++
T Consensus 315 D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 315 DCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eccCccccCceE---EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee
Confidence 999754322222 23678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
++.|+.|++|++..... ..+..+.-..+...++++.|+-.++++.||..+.++|||+.+..
T Consensus 392 ~s~d~~Vklw~~~~~~~------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccceEEEEeecCCCC------------cccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999999999976432 22222222233467788999999899999999999999998764
No 59
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=3.2e-29 Score=236.50 Aligned_cols=236 Identities=17% Similarity=0.283 Sum_probs=180.6
Q ss_pred EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-C-ccccee
Q 014472 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-K-SLEAMQ 221 (424)
Q Consensus 144 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~-~~~~~~ 221 (424)
|+.++.|++|+... ..+...+.+|.+.|.+++|+|....+|++|+.||.|+|||+.++... . ...++.
T Consensus 50 GG~~gvI~L~~~~r----------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMR----------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred CCceeEEEeeecCC----------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 56788999999876 34567889999999999999975558999999999999999764321 1 112345
Q ss_pred eeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014472 222 IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 222 ~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iw 301 (424)
.+.+|...|.+++|+|++..++++++.|++|+|||++++.. +..+. |...|.+++|+|+|. +|++++.|+.|+||
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIw 194 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHII 194 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEE
Confidence 67789999999999999988888999999999999998763 33443 567899999999998 68899999999999
Q ss_pred ECCCCCCcceeecCCCCCEEEE-----EEcCCCCcEEEEEeCCC----eEEEeeCCCCCcccCCCccCCCCCeeeEEEcC
Q 014472 302 DLRKISTALHTFDSHKEEVFQV-----GWNPKNETILASCCLGR----RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG 372 (424)
Q Consensus 302 d~~~~~~~~~~~~~~~~~v~~~-----~~sp~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (424)
|+|+ +..+..+.+|.+.+... .|++++. +|++++.|+ .|+|||++.... +.....+..
T Consensus 195 D~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~-----------pl~~~~ld~ 261 (568)
T PTZ00420 195 DPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTS-----------ALVTMSIDN 261 (568)
T ss_pred ECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCC-----------ceEEEEecC
Confidence 9998 67788899998765433 3457775 567766653 799999986431 122223344
Q ss_pred CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 373 HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 373 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
+.+.+.-....+++. ++++|+.|+.|++|++..+.
T Consensus 262 ~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 262 ASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCc
Confidence 444333333344566 78899999999999998764
No 60
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=5.8e-30 Score=225.61 Aligned_cols=264 Identities=19% Similarity=0.337 Sum_probs=215.0
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC--
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-- 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-- 199 (424)
-.|...++..+|+|.|- ++|+|...|+|+|||.... .......++...++|..|+|++++.. |++.++
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~--------~hiLKnef~v~aG~I~Di~Wd~ds~R-I~avGEGr 125 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQK--------EHILKNEFQVLAGPIKDISWDFDSKR-IAAVGEGR 125 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCc--------ceeeeeeeeecccccccceeCCCCcE-EEEEecCc
Confidence 46889999999999985 9999999999999998762 22333456667889999999999985 554443
Q ss_pred --CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 200 --DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 200 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
=|.+.+||-.+ .+..+.+|...|+++.|-|..+..+++|++|++|.+|.=.. .+.-.++..|..-|+
T Consensus 126 erfg~~F~~DSG~--------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 126 ERFGHVFLWDSGN--------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVN 194 (603)
T ss_pred cceeEEEEecCCC--------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeeccccccccee
Confidence 24577777643 35567899999999999999999999999999999997543 233455677999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec---CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|+.|+|+|. +||+.+.||.|.+||=.+ ++.+..+. +|++.|.+++|+|++. -+++++.|.+++|||+......+
T Consensus 195 ~VRysPDG~-~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 195 CVRYSPDGS-RFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred eEEECCCCC-eEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEE
Confidence 999999998 699999999999999988 77788887 8999999999999997 58899999999999998875443
Q ss_pred CCCcc-----------------------------CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 355 TPEDA-----------------------------EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 355 ~~~~~-----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
..... +...+..+....||...|+++..+|++. .|.+|+.||.|.-|+..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecC
Confidence 21110 0112236677789999999999999998 69999999999999998
Q ss_pred CCCCC
Q 014472 406 ENIYH 410 (424)
Q Consensus 406 ~~~~~ 410 (424)
++.-.
T Consensus 351 ~g~~~ 355 (603)
T KOG0318|consen 351 SGTSD 355 (603)
T ss_pred Ccccc
Confidence 87543
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=229.29 Aligned_cols=270 Identities=17% Similarity=0.237 Sum_probs=204.0
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC---------------------------------
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL--------------------------------- 164 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~--------------------------------- 164 (424)
.++.-.|...|.++++.|.|. .|++|+.|..|++||+.........
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 344556788999999999997 7999999999999999864332110
Q ss_pred ----------------CCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014472 165 ----------------DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 165 ----------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
..-..-.....||...+++.+|+|.....+++++.||++++||++.......+-......+..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 0000112234678899999999999988999999999999999987653222211111234456
Q ss_pred ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC--CeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014472 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 306 (424)
+++.++|+++++ +||+|+.||.|.+|+.+..........-.+|.. .|+||+|+++|+ +|++-+.|+++++||+|..
T Consensus 319 ~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 319 PVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred CceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccc
Confidence 789999999997 589999999999999976554334445567877 999999999998 5889999999999999998
Q ss_pred CCcceeecCCC--CCEEEEEEcCCCCcEEEEEeC------CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 307 STALHTFDSHK--EEVFQVGWNPKNETILASCCL------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 307 ~~~~~~~~~~~--~~v~~~~~sp~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
.+++....+-. -+-+.++|||+.+ ++++|.. .|.+.+||..+. ..++.+.-....|.
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~--------------d~v~ki~i~~aSvv 461 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTL--------------DTVYKIDISTASVV 461 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccce--------------eeEEEecCCCceEE
Confidence 88888776533 3568899999996 7778754 567999998875 33444444466789
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEE-ecCC
Q 014472 379 DFSWNPCEDWVISSVAEDNILQIW-QMAE 406 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d~~i~iw-~~~~ 406 (424)
.+.|+|.-+. |..|+.||.++|+ |.+.
T Consensus 462 ~~~WhpkLNQ-i~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 462 RCLWHPKLNQ-IFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEeecchhhh-eeeecCCCceEEEECccc
Confidence 9999999885 5556668888864 4443
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=1.4e-30 Score=215.40 Aligned_cols=280 Identities=19% Similarity=0.284 Sum_probs=214.5
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC-------CCCCCC-CCcEEEecCCCCeeeEE
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP-------PLDGAC-SPDLRLRGHSTEGYGLS 185 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~-------~~~~~~-~~~~~~~~h~~~v~~l~ 185 (424)
.+.+....-.|.+++.+.+|+|+|. ++|||+.|..|+|.|+.....+. ...... -.++++..|..+|++|.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3445555668999999999999997 99999999999999998421111 111112 33567889999999999
Q ss_pred ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCC
Q 014472 186 WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP 265 (424)
Q Consensus 186 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~ 265 (424)
|+|... +|++|+.|++|++||+......+.++. ++ ...+|.++.|+|.|.++ ++|.+-.++++||+.+-++..+
T Consensus 180 FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~---~q-d~~~vrsiSfHPsGefl-lvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 180 FHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKV---FQ-DTEPVRSISFHPSGEFL-LVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ecchhh-eEEeccCCCeEEEEecccHHHHHHHHH---hh-ccceeeeEeecCCCceE-EEecCCCceeEEeccceeEeee
Confidence 999776 899999999999999976543322222 22 35689999999999865 4888899999999998765332
Q ss_pred eeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCC-CCEEEEEEcCCCCcEEEEEeCCCeEE
Q 014472 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHK-EEVFQVGWNPKNETILASCCLGRRLM 343 (424)
Q Consensus 266 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~ 343 (424)
-..-..|.+.|+++.+++.++ +.++|+.||.|++||--+ .+++.++. +|. ..|.+..|..+++ ++++.+.|..++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~k-yiLsSG~DS~vk 330 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGK-YILSSGKDSTVK 330 (430)
T ss_pred cCcccccccceeEEEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCe-EEeecCCcceee
Confidence 223356899999999999997 899999999999999877 67777765 454 5799999999997 688999999999
Q ss_pred EeeCCCCCcccCCCccCC-----C---------------C---------------CeeeEEEcCCCCCcceEEeCCCCCc
Q 014472 344 VWDLSRIDEEQTPEDAED-----G---------------P---------------PELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 344 iwd~~~~~~~~~~~~~~~-----~---------------~---------------~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
+|.+.+++..+...+... . | .+.-...-||++.+..+.-+|.++
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p- 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP- 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-
Confidence 999998765443222100 0 0 011111237999999999999999
Q ss_pred EEEEEeCCCcEEEEec
Q 014472 389 VISSVAEDNILQIWQM 404 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~ 404 (424)
.+++++.|-.+++|--
T Consensus 410 ~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYR 425 (430)
T ss_pred ceeeecccceeeeeee
Confidence 6999999999999964
No 63
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=3.8e-29 Score=235.01 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=189.7
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|.+.|++++|+|.+..+||+|+.||+|+|||+....... ....+...+.+|...|.+++|+|.+.++|++|+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 358999999999999444589999999999999997621110 11245678899999999999999876689999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC-eeEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCL 279 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i 279 (424)
+.|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++. +..+..|... +..+
T Consensus 148 gtVrIWDl~tg~------~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 148 MVVNVWDVERGK------AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRC 217 (493)
T ss_pred CEEEEEECCCCe------EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEE
Confidence 999999998763 3556678999999999999986 677999999999999998664 6667778764 4567
Q ss_pred EecCCCCeEEEEE---eCCCcEEEEECCCCCCcceeecCCC-CCEEEEEEcCCCCcEEEEEe-CCCeEEEeeCCCCCccc
Q 014472 280 AFNPFNEWILATG---STDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCC-LGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 280 ~~~~~~~~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 354 (424)
.|.+++..++.+| +.|+.|++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+..+.
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~--- 293 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNER--- 293 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCc---
Confidence 8998887555444 2478999999998666766655433 4566677899986 566665 69999999998753
Q ss_pred CCCccCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 355 TPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+++.. ..+..++..++|.|.-. +=...--..+++++...
T Consensus 294 -----------~~~~~~~~s~~~~~g~~~~pk~~---~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 294 -----------LTFCSSYSSVEPHKGLCMMPKWS---LDTRKCEIARFYALTYH 333 (493)
T ss_pred -----------eEEEeeccCCCCCcceEeccccc---ccccceeeeEEEEecCC
Confidence 22222 23455678888888532 11122234456665544
No 64
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=232.50 Aligned_cols=238 Identities=22% Similarity=0.339 Sum_probs=202.8
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEE
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
.-+|.+.+|-+.- +.+++|+.|..|+||++.+ ...+..+.+|.+-|.+++.+|..+ +++++|.|-+|+
T Consensus 55 ~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt----------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iK 122 (794)
T KOG0276|consen 55 EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT----------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIK 122 (794)
T ss_pred ccchhhheeeecc-ceEEEecCCceEEEEeccc----------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEE
Confidence 4578888888744 5899999999999999998 677889999999999999999988 899999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
+||-+. .+.+.+.+.+|..-|.+++|+|.+++.||+++-|++|+||.+.++. +..++.+|...|+|+.+-+-
T Consensus 123 lW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~~ 194 (794)
T KOG0276|consen 123 LWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYTG 194 (794)
T ss_pred EeeccC-----ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEeccC
Confidence 999874 3467788999999999999999999999999999999999998855 57888999999999999875
Q ss_pred C-CeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 285 N-EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 285 ~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
| +.+|++|+.|.+|+|||..+ +.+++++.+|...|..+.|+|.-+ ++++|+.||+++||+-.+.+.+...
T Consensus 195 gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tL------- 265 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTL------- 265 (794)
T ss_pred CCcceEEecCCCceEEEeecch-HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhh-------
Confidence 4 22699999999999999998 899999999999999999999987 8999999999999998876543322
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcE
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 399 (424)
.-....|++++-.+.+. .++.|.+.|.|
T Consensus 266 -------n~gleRvW~I~~~k~~~-~i~vG~Deg~i 293 (794)
T KOG0276|consen 266 -------NYGLERVWCIAAHKGDG-KIAVGFDEGSV 293 (794)
T ss_pred -------hcCCceEEEEeecCCCC-eEEEeccCCcE
Confidence 22234567777666665 46665555544
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=195.10 Aligned_cols=275 Identities=20% Similarity=0.353 Sum_probs=207.0
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC--CCCC---CCCcEEEecCCCCeeeEEe
Q 014472 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--LDGA---CSPDLRLRGHSTEGYGLSW 186 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~--~~~~---~~~~~~~~~h~~~v~~l~~ 186 (424)
..+.|+.+..+.-...|.+++|+|.|. +.|+|+...+.+|..+........ .... ......-+.|.+.|+|.+|
T Consensus 19 ~k~~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 19 EKKHFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred cccceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence 356788899999999999999999987 899999999999987654211110 0000 1112334568999999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCCcc----------------------------------------------cce
Q 014472 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSL----------------------------------------------EAM 220 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------------------~~~ 220 (424)
+|.|. +|++|++|.+|++..++.......- +..
T Consensus 98 s~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 99998 8999999999999877654321100 223
Q ss_pred eeeecCCcceeeEE-eeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe-cc---cCCCeeEEEecCCCCeEEEEEeCC
Q 014472 221 QIFKVHEGVVEDVA-WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VA---HQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 221 ~~~~~~~~~v~~i~-~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~~~v~~i~~~~~~~~~l~~g~~d 295 (424)
..+.+|.+.|.++- |+ ..+|++|+.|.+|++||+|-+.+...+..- .. ..+.|.+++..|.|+ +|++|..|
T Consensus 177 ~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~d 252 (350)
T KOG0641|consen 177 HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHAD 252 (350)
T ss_pred eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCC
Confidence 33444555554432 22 347889999999999999987652222111 11 125799999999998 89999999
Q ss_pred CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC
Q 014472 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
....+||+|. +.+++.+..|...|.++.|+|.. .+|++|+.|..|++-|+...-.. ...+.+...|+.
T Consensus 253 ssc~lydirg-~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~----------el~~~vv~ehkd 320 (350)
T KOG0641|consen 253 SSCMLYDIRG-GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAH----------ELPIMVVAEHKD 320 (350)
T ss_pred CceEEEEeeC-CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhh----------cCceEEEEeccC
Confidence 9999999997 89999999999999999999987 58999999999999998753211 123455667888
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
.+..+.|+|+.- -+++.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 899999999987 57888999999999875
No 66
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=207.77 Aligned_cols=321 Identities=19% Similarity=0.332 Sum_probs=240.9
Q ss_pred hhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCC
Q 014472 35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANG 114 (424)
Q Consensus 35 ~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (424)
++.+.-+||.+..+|.-..... .++.+|++... ..|.+.|.++... .+
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~-------~rla~gS~~Ee-~~Nkvqiv~ld~~------------------------s~ 85 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKK-------FRLAVGSFIEE-YNNKVQIVQLDED------------------------SG 85 (364)
T ss_pred EEEecCCCceeeeccccCCCcc-------eeEEEeeeccc-cCCeeEEEEEccC------------------------CC
Confidence 4567789999999998764433 89999997654 6688888887411 12
Q ss_pred cEEEEEEeccCCceeEEEecCCC----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC
Q 014472 115 KVQIIQQINHDGEVNRARYMPQN----PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~p~~----~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
.+.....+.|+-+++.+.|.|+. +.+|||.+ ..+++|.+............. ....-..+.+++++..|+.-.
T Consensus 86 e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L-~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 86 ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVL-NNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred ceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhh-ccCcccccCCcccccccccCC
Confidence 23333347899999999999965 46788754 479999998532222110101 111123467799999999999
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
++++.++|-|-+..|||++++.. ......+-.|...|.+|+|...+..+||+++.||.+++||+|..+....+..-.
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred cceeEeecccCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence 99999999999999999988622 122345667999999999999999999999999999999999877644444433
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCC-cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 271 AHQSEVNCLAFNPFNEWILATGSTDK-TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
....+...++|+++..+++|+-..|+ .|.|.|+|.+..++..+..|.+.|+.++|.|.....+++++.|..+.|||+..
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 34678999999999998898877654 79999999999999999999999999999999988999999999999999987
Q ss_pred CCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
....... .+.+.+. -.+.|+.+.|++..+.-|+.+. ++++.+-+
T Consensus 320 ~~~~~~~------dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kkleiLR 363 (364)
T KOG0290|consen 320 MPRENGE------DPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEILR 363 (364)
T ss_pred ccccCCC------Cchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeEEe
Confidence 6431110 1222222 2457999999977665566544 56666543
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=242.75 Aligned_cols=251 Identities=25% Similarity=0.424 Sum_probs=210.6
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
-.+..++|.....++|||++..|.|.+||+... ...+.+..+..|...+.+++|++..+++|++||.||+|++
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~-------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKS-------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcc-------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 456778998767789999999999999999872 1223345678899999999999999999999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCC
Q 014472 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN 285 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 285 (424)
||++.... ...+.+....|.+++|+|...+.|+++.+.|.+++||+|.... +...+.+|.++|.|+.|+|++
T Consensus 161 ~DlR~~~S------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr 232 (839)
T KOG0269|consen 161 WDLRSKKS------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNR 232 (839)
T ss_pred Eeeecccc------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCC
Confidence 99987643 3445567889999999999999999999999999999998764 566778999999999999966
Q ss_pred CeEEEEEeCCCcEEEEECCCC-CCcceeecCCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEeeCCCCCcccCCCccCCC
Q 014472 286 EWILATGSTDKTVKLFDLRKI-STALHTFDSHKEEVFQVGWNPKNETILASCCL--GRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 286 ~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
. +|||||.|+.|+|||.... ..++.++.. ..+|.++.|-|..++.||+++. |-.|+|||++.
T Consensus 233 ~-~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR------------- 297 (839)
T KOG0269|consen 233 E-WLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR------------- 297 (839)
T ss_pred c-eeeecCCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecc-------------
Confidence 6 7999999999999999852 344555553 6799999999999888998875 77899999987
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
|..+..++..|...++.++|....+.++.+++.||+|..-.+..
T Consensus 298 PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 298 PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 34667788899999999999876666899999999887655544
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-30 Score=204.61 Aligned_cols=260 Identities=22% Similarity=0.368 Sum_probs=206.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecC--CCCceEEEEeCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK--FKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~d 200 (424)
.|.+.|..+...--|. .|||++.|++|+|+..... +....+..|.+|.++|+.++|.. .|. +|++++.|
T Consensus 9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n-------~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYD 79 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNN-------GQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYD 79 (299)
T ss_pred hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCC-------CCceeeeEecCCCCCeeEEeecccccCc-EeeEeecC
Confidence 5888888887777676 7999999999999999872 33467889999999999999964 454 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCC-CcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.|.||.-..+. +........|...|++++|.|.+ ..+|++++.||.|.|.+.+............+|.-.|+++
T Consensus 80 gkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 80 GKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred ceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 999999987653 33455567899999999999864 3467899999999999998763333344556899999999
Q ss_pred EecCC---C----------CeEEEEEeCCCcEEEEECCCCC-CcceeecCCCCCEEEEEEcCCC---CcEEEEEeCCCeE
Q 014472 280 AFNPF---N----------EWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKN---ETILASCCLGRRL 342 (424)
Q Consensus 280 ~~~~~---~----------~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~---~~~l~s~~~dg~i 342 (424)
+|.|. | .+-|++|+.|..|+||+..+.. ..-.++.+|...|..++|.|.- ...+|+|+.||++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 99986 3 1249999999999999998732 2334588999999999999964 4579999999999
Q ss_pred EEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.||..+...+.. ...++. .....++.+.|+..|. +|+.++.|+.|.+|.-+..
T Consensus 236 iIwt~~~e~e~w--------k~tll~---~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 236 IIWTKDEEYEPW--------KKTLLE---EFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEEecCccCcc--------cccccc---cCCcceEEEEEecccc-EEEEecCCcEEEEEEeCCC
Confidence 999887432211 123333 2456799999999999 7888888999999987654
No 69
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=5.5e-29 Score=204.06 Aligned_cols=314 Identities=20% Similarity=0.264 Sum_probs=232.1
Q ss_pred eEEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEE
Q 014472 63 VQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIA 142 (424)
Q Consensus 63 ~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~la 142 (424)
.-+|++||+.... +|.+.+..++-. .+.+.....+.|.+.|..++-+|.++.+|+
T Consensus 26 ~icFlvgTnslK~-dNqVhll~~d~e------------------------~s~l~skvf~h~agEvw~las~P~d~~ila 80 (370)
T KOG1007|consen 26 HICFLVGTNSLKE-DNQVHLLRLDSE------------------------GSELLSKVFFHHAGEVWDLASSPFDQRILA 80 (370)
T ss_pred ceEEEEeccccCC-cceeEEEEecCc------------------------cchhhhhhhhcCCcceehhhcCCCCCceEE
Confidence 4689999987764 488888777311 112222234567899999999999988999
Q ss_pred EEecC-------CeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014472 143 TKTVS-------AEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN 214 (424)
Q Consensus 143 tg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 214 (424)
|+..+ ..+.||.+........ ......+..+. .+-+.|.|+.|.|++. .|++-. |..|.+|++......
T Consensus 81 T~yn~~s~s~vl~~aaiw~ipe~~~~S~-~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~ 157 (370)
T KOG1007|consen 81 TVYNDTSDSGVLTGAAIWQIPEPLGQSN-SSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKI 157 (370)
T ss_pred EEEeccCCCcceeeEEEEecccccCccc-cchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcch
Confidence 98653 3577999986433211 11122233333 3556899999999877 466554 889999999877552
Q ss_pred CcccceeeeecCCcceeeEEeeC-CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe
Q 014472 215 KSLEAMQIFKVHEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS 293 (424)
Q Consensus 215 ~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~ 293 (424)
...-....-..|....++-+|+| ...+.+ ....|+++..||+|+......+. .+|...|..+.|+|+.+++|++++
T Consensus 158 vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 158 VAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred heeecccccccccceecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcC
Confidence 11111122233677888999999 333455 44578999999999876533333 478889999999999999999999
Q ss_pred CCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc-----------C--
Q 014472 294 TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA-----------E-- 360 (424)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~-- 360 (424)
.||.|+|||.|+...|++.+.+|...|.++.|+|...+++++++.|..|.+|-......++..... +
T Consensus 235 DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 999999999999999999999999999999999998889999999999999987665433211110 0
Q ss_pred --CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 361 --DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 361 --~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.-+...+.++..|...|++++|+.-.+|++|+-+.||.+.|=++...
T Consensus 315 ~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 315 VKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 11234556788899999999999999999999999999998776543
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-28 Score=222.95 Aligned_cols=256 Identities=23% Similarity=0.359 Sum_probs=208.7
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+++++... .+.+..|.|.+. ++++|...|.+.+||+.+ .....+..+|.+.|++++.+|++. .+++|
T Consensus 406 ciRTi~~~-y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS----------~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~ 472 (888)
T KOG0306|consen 406 CIRTITCG-YILASKFVPGDR-YIVLGTKNGELQVFDLAS----------ASLVETIRAHDGAIWSISLSPDNK-GFVTG 472 (888)
T ss_pred eeEEeccc-cEEEEEecCCCc-eEEEeccCCceEEEEeeh----------hhhhhhhhccccceeeeeecCCCC-ceEEe
Confidence 34444333 666777777554 677777777777777766 344556678999999999999998 59999
Q ss_pred eCCCcEEEEeCCCCCCC-----C--cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 198 SDDAQICLWDINAAPKN-----K--SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~-----~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
|.|.+|++||+.-.... + .+.....+ .-...|.|++++|+++ ++|++--|.+|+||-+.+-+ ....+.
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK---FflsLY 547 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK---FFLSLY 547 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee---eeeeec
Confidence 99999999997532210 1 01111112 2457899999999997 56788899999999999855 477788
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+|.-||.||..+|++. +++||+.|.+|++|-+.= +.+-+.+.+|...|+++.|.|.. +++.+|+.|+.|+-||-...
T Consensus 548 GHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred ccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhh
Confidence 9999999999999998 899999999999999985 88999999999999999999976 58999999999999998774
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+.+..+.+|...|++++.+|+|. +++|+|.|..|++|......+
T Consensus 625 --------------e~iq~L~~H~~ev~cLav~~~G~-~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 625 --------------EEIQKLDGHHSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred --------------hhheeeccchheeeeeEEcCCCC-eEEeccCCceeEeeeccCcce
Confidence 66788899999999999999999 699999999999999988654
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.5e-29 Score=217.35 Aligned_cols=241 Identities=19% Similarity=0.238 Sum_probs=205.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.....|.++.|..||. ++|+|...|.|+|||..+ ...+..+.+|+.++..+.|+|.+..+|++|+.|+.
T Consensus 66 rFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~----------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v 134 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKS----------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV 134 (487)
T ss_pred hhccceeEEEeecCCe-EEEccCCcCcEEEecccc----------HHHHHHHhhccCceeEEEecccCCeEEEecCCCce
Confidence 3567899999999997 999999999999999655 34567788999999999999999989999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+++||+.+.. ....+.+|++.|.+.+|+|..++++++|+.||+|++||+|.... .+.. ..|..+|.++.+-
T Consensus 135 ~k~~d~s~a~------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~e-lnhg~pVe~vl~l 205 (487)
T KOG0310|consen 135 VKYWDLSTAY------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVE-LNHGCPVESVLAL 205 (487)
T ss_pred EEEEEcCCcE------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEE-ecCCCceeeEEEc
Confidence 9999998763 24467899999999999999999999999999999999998642 2333 3689999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
|.|. ++|+++. ..|++||+-+.++.+..+..|...|+|+++..++. .|++++-|+.+++||+.+.
T Consensus 206 psgs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~------------ 270 (487)
T KOG0310|consen 206 PSGS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNY------------ 270 (487)
T ss_pred CCCC-EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccce------------
Confidence 9887 6887764 58999999987777777777999999999999885 6889999999999997764
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
+++..+. -.++|.+++.+|++. .++.|..+|.+.+=
T Consensus 271 --Kvv~s~~-~~~pvLsiavs~dd~-t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 271 --KVVHSWK-YPGPVLSIAVSPDDQ-TVVIGMSNGLVSIR 306 (487)
T ss_pred --EEEEeee-cccceeeEEecCCCc-eEEEecccceeeee
Confidence 4455443 467899999999998 68888889977665
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-29 Score=202.42 Aligned_cols=259 Identities=18% Similarity=0.320 Sum_probs=207.5
Q ss_pred eccCCceeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 122 INHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p--~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
-+|..+|..++|+| ....+|++++.||.-.+-+-++ ..-+.++.+|++.|++...+.+.. +.++++.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----------gdwigtfeghkgavw~~~l~~na~-~aasaaa 79 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----------GDWIGTFEGHKGAVWSATLNKNAT-RAASAAA 79 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----------CCcEEeeeccCcceeeeecCchhh-hhhhhcc
Confidence 37999999999998 3346899999999888777665 445788999999999999988666 6889999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|-+.++||.-++.....+ .|..-|..++|+.+..+++ +|+.+..++|||++..+. +...+.+|.+.|..+
T Consensus 80 dftakvw~a~tgdelhsf-------~hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSF-------EHKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTV 149 (334)
T ss_pred cchhhhhhhhhhhhhhhh-------hhhheeeeEEecccchhhh-ccchHHHhhhhhccCCCC--CchhhcCCCCcceeE
Confidence 999999999888543333 2788999999999988765 999999999999998774 566778999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
-|..... .|++...|++||+||.|+ +..++++.. +.+|+++..+++|+ +++....+.|++||..+....+....+
T Consensus 150 ~wc~eD~-~iLSSadd~tVRLWD~rT-gt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 150 LWCHEDK-CILSSADDKTVRLWDHRT-GTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred EEeccCc-eEEeeccCCceEEEEecc-CcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEeccccccceeeccCc
Confidence 9998766 577889999999999998 677777775 67899999999986 446666777999988776544322211
Q ss_pred C------CCC---------------------CeeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 360 E------DGP---------------------PELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 360 ~------~~~---------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
- -.| .+-+.. ..+|.++|.++.|+|+|. +.++||.||+|+||....+
T Consensus 225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 0 000 011122 368999999999999999 8999999999999999765
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.9e-28 Score=232.54 Aligned_cols=268 Identities=22% Similarity=0.359 Sum_probs=209.2
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC--------CCCCCCCCCCcEEEecCCCCeeeEEec
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS--------KPPLDGACSPDLRLRGHSTEGYGLSWS 187 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~h~~~v~~l~~~ 187 (424)
..+.....|.+.|+|++|+|+|. +||+|++|+.|.||....... .......++....+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 34556678999999999999997 899999999999999884100 111224566788899999999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee
Q 014472 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ 267 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~ 267 (424)
|++. +|++++.|++|.||+..+. ..+..+.+|.+.|-.+.|.|-|+ .||+-++|++|+||++..-...+.+.
T Consensus 139 p~~~-~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It 210 (942)
T KOG0973|consen 139 PDDS-LLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSIT 210 (942)
T ss_pred CCcc-EEEEecccceEEEEccccc------eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeec
Confidence 9887 8999999999999999655 56788899999999999999997 56899999999999976633211121
Q ss_pred Eec---ccCCCeeEEEecCCCCeEEEEEe-CC---CcEEEEECCCCCCcceeecCCCCCEEEEEEcCC--------C---
Q 014472 268 SVV---AHQSEVNCLAFNPFNEWILATGS-TD---KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK--------N--- 329 (424)
Q Consensus 268 ~~~---~~~~~v~~i~~~~~~~~~l~~g~-~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~--------~--- 329 (424)
... .-......+.|+|+|.+ |++.. .. .++.|.+-.+ ...-..+-+|.+++.++.|+|. |
T Consensus 211 ~pf~~~~~~T~f~RlSWSPDG~~-las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 211 KPFEESPLTTFFLRLSWSPDGHH-LASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred cchhhCCCcceeeecccCCCcCe-ecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 111 12346789999999995 66543 22 3688887655 5666788899999999999982 1
Q ss_pred -C----cEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEE-EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 330 -E----TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI-HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 330 -~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
. .++|+|+.|++|.||..... +++++ +.-....|.+++|+|||. .|..+|.||+|.+..
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~--------------RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALP--------------RPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIH 353 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCC--------------CchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEE
Confidence 1 17899999999999998653 22222 233356799999999999 577779999999999
Q ss_pred cCCCCC
Q 014472 404 MAENIY 409 (424)
Q Consensus 404 ~~~~~~ 409 (424)
+....+
T Consensus 354 Fee~El 359 (942)
T KOG0973|consen 354 FEEKEL 359 (942)
T ss_pred cchHHh
Confidence 998755
No 74
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.3e-27 Score=222.98 Aligned_cols=240 Identities=15% Similarity=0.201 Sum_probs=175.3
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
....+|.+.|.+++|+|+...+||+|+.||.|+||++........ ....+...+.+|...|.+++|+|++..+|++++
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 344589999999999998556999999999999999975211000 011345567899999999999999876678999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|++|++||++++.. ...+. |...|.+++|+|+|. +|++++.|+.|+|||++++.. +..+.+|.+.+.+
T Consensus 146 ~DgtIrIWDl~tg~~------~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s 214 (568)
T PTZ00420 146 FDSFVNIWDIENEKR------AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNT 214 (568)
T ss_pred CCCeEEEEECCCCcE------EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE---EEEEecccCCcee
Confidence 999999999987632 22233 567899999999987 667888999999999998764 6677788876543
Q ss_pred E-----EecCCCCeEEEEEeCC----CcEEEEECCCCCCcceeecCCC--CCEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 279 L-----AFNPFNEWILATGSTD----KTVKLFDLRKISTALHTFDSHK--EEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 279 i-----~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
. .|++++.+ |++++.| +.|+|||++....++..+..+. +.+......+++ .++++|+.|+.|++|++
T Consensus 215 ~~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 215 KNIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEc
Confidence 3 34577774 6666655 3799999997677777654332 333333334445 58889999999999999
Q ss_pred CCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014472 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
..+.. ..+..+ .+..++.+++|.|..
T Consensus 293 ~~~~~------------~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 293 SLGSI------------RKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCcE------------Eeeccc-ccCCCccceEEcccc
Confidence 76421 112222 245678889999864
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.4e-28 Score=196.09 Aligned_cols=251 Identities=17% Similarity=0.290 Sum_probs=206.5
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
...+|...|.+++|+-+|. .+|+|+.|+++.+|++... .........+|.+.|-.++|+|..+.+|++++.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~--------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~ 85 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERD--------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG 85 (313)
T ss_pred HhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecch--------hhhhhhcccCCCcchhhheeCCCCCcceEEecC
Confidence 3457889999999999997 7999999999999999872 233345577899999999999999889999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.+|++||++.++. ....... ..=.-+.|+|++.++ ++++.|..|.+.|.|+.+. ... ....-.++-+
T Consensus 86 dk~ir~wd~r~~k~------~~~i~~~-~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~---~~~-~~~~~e~ne~ 153 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKC------TARIETK-GENINITWSPDGEYI-AVGNKDDRITFIDARTYKI---VNE-EQFKFEVNEI 153 (313)
T ss_pred CceEEEEEeccCcE------EEEeecc-CcceEEEEcCCCCEE-EEecCcccEEEEEecccce---eeh-hcccceeeee
Confidence 99999999988743 3333323 333457899999865 5889999999999998653 222 2235568889
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
+|+-.+. +|+.....|.|.|..... -+++..+++|.....|+.|+|+|+ +||+|+.|..+.+||+...
T Consensus 154 ~w~~~nd-~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL--------- 221 (313)
T KOG1407|consen 154 SWNNSND-LFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL--------- 221 (313)
T ss_pred eecCCCC-EEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh---------
Confidence 9997666 555556679999999887 588999999999999999999997 7999999999999999864
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.+.+.+..+.-+|..++|+.+|+ +||++|+|-.|-|=.+.+|..
T Consensus 222 -----iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 222 -----ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred -----hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCe
Confidence 55677778889999999999999 799999999998877777643
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=204.64 Aligned_cols=259 Identities=20% Similarity=0.299 Sum_probs=213.0
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+++....+.|.+|+|++. ++++|+.||.|.+|++.+...... ...+....+--+..+|.|+.|+.+.. +|++|+.|
T Consensus 209 KFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKD--LkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqD 284 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKD--LKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQD 284 (508)
T ss_pred ecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhh--hhhhhhcceeecccceEEEeecccHH-HhhccCcC
Confidence 456778899999999997 899999999999999987221111 11223334555788999999999877 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeee-cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.|++|.+.++.+ ++.+. .|+..|+++.|+.++..++ +++.|.++++.-++++++ +..+.+|.+.|+..
T Consensus 285 GkIKvWri~tG~C------lRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 285 GKIKVWRIETGQC------LRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEA 354 (508)
T ss_pred CcEEEEEEecchH------HHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchh---HHHhcCccccccce
Confidence 9999999999854 44444 7999999999999998776 999999999999999876 77788999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.|.++|.+ +++++.||+|++|+..+ ..++.+++. ...+|.++..-|.++..++.|...++|.|-++..
T Consensus 355 ~ft~dG~~-iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-------- 424 (508)
T KOG0275|consen 355 TFTDDGHH-IISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-------- 424 (508)
T ss_pred EEcCCCCe-EEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--------
Confidence 99999985 88999999999999998 788888774 3458899999888777788999999999999875
Q ss_pred ccCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 358 DAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
+.++.+... .+...+...+|.|.| +.+.++|+.++.|.+.+|.++.
T Consensus 425 -------QvVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 425 -------QVVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred -------eEEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceee
Confidence 555555432 234556788999995 8888999999999999997764
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=225.03 Aligned_cols=252 Identities=23% Similarity=0.362 Sum_probs=211.6
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC
Q 014472 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
..+........+|.+.|.++++.. +..++++|+.|.++++||+.+ ..+...+.+|...|.++...+
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s----------g~C~~~l~gh~stv~~~~~~~--- 301 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST----------GECTHSLQGHTSSVRCLTIDP--- 301 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC----------CcEEEEecCCCceEEEEEccC---
Confidence 344444455789999999999987 556999999999999999887 677888999999999998754
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc
Q 014472 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 192 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.++++|+.|.+|++|++.++ ..+..+.+|.++|+++..+ +. ++++|+.|++|++||+++.++ +..+.+
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~c---l~sl~g 369 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKC---LKSLSG 369 (537)
T ss_pred ceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhcee---eeeecC
Confidence 36888999999999999876 3566677799999999988 43 667999999999999997664 888899
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|...|.++.+.+. . .+++|+.|++|++||+++..+++.++.+|..-+..+.+.. .+|++++.|++|++||...+
T Consensus 370 H~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~- 443 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEG- 443 (537)
T ss_pred CcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc---ceeEeccccccEEEeecccC-
Confidence 9999999998865 4 6899999999999999984389999999999997777653 46999999999999999886
Q ss_pred cccCCCccCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
+++....+ |...|..+++. .. .+++++.|+.+++||+..+....
T Consensus 444 -------------~~~~~~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 444 -------------ECLRTLEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred -------------ceeeeeccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCchhh
Confidence 45666666 66778888876 33 68888999999999999886543
No 78
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=225.70 Aligned_cols=257 Identities=15% Similarity=0.332 Sum_probs=203.3
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---CCCeeeEEecCCCCceEEEEeCCC
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
....++|..+++...++++| ...+.||.+........ ........ .-.+..|.|.....++|++++..|
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~------~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK------CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc------eeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 45677888888776555444 34788888876322221 11111111 124567889877778999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
.|.+||+...... +.+..+..|...++++.|++..++++++|+.||+|++||+|..+. ..++.+....|+.|+|
T Consensus 111 ~i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 111 VISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTFRSNSESIRDVKF 184 (839)
T ss_pred cEEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccccccchhhhceee
Confidence 9999999864221 345668889999999999999999999999999999999998664 5666677889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|.-.+.|+++...|.+.+||+|.+.++...+.+|.++|.++.|+|++ .+||||+.|+.|+|||+.....
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRA--------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCc---------
Confidence 998888999999999999999999999999999999999999999977 4899999999999999986432
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe--CCCcEEEEecCCCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA--EDNILQIWQMAENIY 409 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~ 409 (424)
..+.+.. ...+|..++|-|..++.|++++ .|-.|+|||+....+
T Consensus 255 ---~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 255 ---KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred ---cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence 1122221 2457999999999999999887 578999999988744
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.2e-28 Score=201.44 Aligned_cols=264 Identities=18% Similarity=0.301 Sum_probs=221.6
Q ss_pred CCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC
Q 014472 113 NGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 113 ~~~~~~~~~~-~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
.-++++++.+ +|.+.|..++.....+ ++.+++.|.+-+||.+.+ ..++.++.+|.+.|.++.|++.+.
T Consensus 135 t~~~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Es----------g~CL~~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 135 TVKFRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLES----------GACLATYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred ceeEeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecc----------ccceeeecccccceeeEEeccccc
Confidence 3456666554 6999999999987666 999999999999999998 677889999999999999999887
Q ss_pred ceEEEEeCCCcEEEEeC------CCCCCC----------------------------CcccceeeeecCCcceeeEEeeC
Q 014472 192 GHLLSGSDDAQICLWDI------NAAPKN----------------------------KSLEAMQIFKVHEGVVEDVAWHL 237 (424)
Q Consensus 192 ~~l~s~~~dg~i~vwd~------~~~~~~----------------------------~~~~~~~~~~~~~~~v~~i~~~~ 237 (424)
++++++.|++..||.. ...... ..-.++..+.+|.+.|.+..|..
T Consensus 204 -L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 204 -LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred -eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 8999999999999972 111000 01135667889999999999998
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCC
Q 014472 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK 317 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 317 (424)
.+..+ ++++-|.+..+||+.++.. +..+.+|....+.++-+|..+ ++++.+.|.+.++||+|..-..+..|++|.
T Consensus 283 gg~Q~-vTaSWDRTAnlwDVEtge~---v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 283 GGQQM-VTASWDRTANLWDVETGEV---VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred Cccee-eeeeccccceeeeeccCce---eccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence 88765 5999999999999999875 777889999999999999776 899999999999999997667788999999
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014472 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN 397 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 397 (424)
..|+++.|..+.+ +++|+.|.+|++||++++. ..+.+++. .++++.++.+..++ +|+.--++.
T Consensus 358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMR-------------splATIRt-dS~~NRvavs~g~~-iIAiPhDNR 420 (481)
T KOG0300|consen 358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMR-------------SPLATIRT-DSPANRVAVSKGHP-IIAIPHDNR 420 (481)
T ss_pred cceeEEEEecCCc--eeecCCCceEEEeeecccc-------------Ccceeeec-CCccceeEeecCCc-eEEeccCCc
Confidence 9999999999874 8899999999999999875 33444432 45789999998888 788888888
Q ss_pred cEEEEecCCCCCC
Q 014472 398 ILQIWQMAENIYH 410 (424)
Q Consensus 398 ~i~iw~~~~~~~~ 410 (424)
.|++||++.+.+.
T Consensus 421 qvRlfDlnG~Rla 433 (481)
T KOG0300|consen 421 QVRLFDLNGNRLA 433 (481)
T ss_pred eEEEEecCCCccc
Confidence 9999999988664
No 80
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-26 Score=192.09 Aligned_cols=245 Identities=16% Similarity=0.257 Sum_probs=194.8
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC--CC
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD--DA 201 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg 201 (424)
..+.|+++.|+++|. ++++++.|..++|||... .+...++..++-.+..++|..... .++.++. |.
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~----------g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLS----------GKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDD 80 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCC----------CceeeEeecccccccEEEEecCCc-eEEEccCCCCC
Confidence 367899999999997 677788899999999988 566777777777888888877665 3555555 88
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
+|+..++.+. +.++.+.+|...|++++.+|-+. .|++++.|++|++||+|..++ ...+ +...-..++|
T Consensus 81 tIryLsl~dN------kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~c---qg~l--~~~~~pi~Af 148 (311)
T KOG1446|consen 81 TIRYLSLHDN------KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKC---QGLL--NLSGRPIAAF 148 (311)
T ss_pred ceEEEEeecC------ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCC---ceEE--ecCCCcceeE
Confidence 9999999877 46788999999999999999986 566999999999999998665 3332 2344556899
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC-CCcceeecCC---CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSH---KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~---~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
+|.|- ++|++.....|++||+|+. +.|..++... ....+.+.|||+|+. ++.+...+.+.+.|.-.+.
T Consensus 149 Dp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~------ 220 (311)
T KOG1446|consen 149 DPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT------ 220 (311)
T ss_pred CCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc------
Confidence 99996 7888887779999999986 4566666543 678899999999985 5566677889999988763
Q ss_pred ccCCCCCeeeEEEcCCCCC---cceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 358 DAEDGPPELLFIHGGHTSK---ISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
++..+.++... -.+..|+|+++ ++++|+.||+|.+|++.++..
T Consensus 221 --------~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 221 --------VKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred --------EeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcE
Confidence 34444444332 25789999999 799999999999999988743
No 81
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=7.8e-28 Score=197.87 Aligned_cols=270 Identities=20% Similarity=0.299 Sum_probs=204.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCc-----EEEecCCCCeeeEEecCCCCceEEEE
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPD-----LRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
.|.+.|+++...+...+++++|+.||.|.+||++.........-..+.. ..-.+|.-.|.++.|-|...+++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6899999999999877899999999999999998744222111111111 12235888999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCC--CcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH--EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+.|.+++|||.++.+....+ . ..+.|.+-+++|-. -.++|+|..+-.|++.|+.++.. .+.+.+|...
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F------~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~LsGHr~~ 190 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDF------K-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTLSGHRDG 190 (397)
T ss_pred cccceEEEeecccceeeEEe------e-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeeeccccCc
Confidence 99999999999876543222 2 46677777777743 25788999999999999999886 7788899999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCccee--------------ecCCCCCEEEEEEcCCCCcEEEEEeCCCe
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--------------FDSHKEEVFQVGWNPKNETILASCCLGRR 341 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------------~~~~~~~v~~~~~sp~~~~~l~s~~~dg~ 341 (424)
|.++.|+|..+++||+|+.||.|++||+|....+... -.+|.+.|.+++|+.++. ++++++.|..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-~l~~~gtd~r 269 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-YLASCGTDDR 269 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-hhhhccCccc
Confidence 9999999999999999999999999999974333222 345778899999999996 6889999999
Q ss_pred EEEeeCCCCCcccCCCccC---------------------------------CCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014472 342 LMVWDLSRIDEEQTPEDAE---------------------------------DGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
+++|+..++.......... ......+..+.+|-..|.+..+.|+-.
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq- 348 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFE- 348 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchh-
Confidence 9999998876432111100 011223344455666677777777766
Q ss_pred EEEEEeCCCcEEEEec
Q 014472 389 VISSVAEDNILQIWQM 404 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~ 404 (424)
.+.+|..|+.+..|-+
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 4667777888888876
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-28 Score=219.65 Aligned_cols=257 Identities=19% Similarity=0.261 Sum_probs=213.3
Q ss_pred cCCcee---EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 124 HDGEVN---RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 124 h~~~v~---~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
|...|+ .+..++.+.++|.||+.||.|++|++......+. .....+++.|...|..+....++. .|+++|.|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s----~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsD 94 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS----TPYIASMEHHSDWVNDIILCGNGK-TLISASSD 94 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc----cchhhhhhhhHhHHhhHHhhcCCC-ceEEecCC
Confidence 444444 5666666666899999999999999987554432 113567888999999999998887 59999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-------CCCeeEec-cc
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVV-AH 272 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~-~~ 272 (424)
-+|++|+...... -++..+..|.+.|.|++.-...+.++|+||-|+.|.+||+.++.. ..+...+. ++
T Consensus 95 tTVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 95 TTVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ceEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 9999999976631 245667789999999999555566899999999999999997621 11222333 78
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
..+|++++.++.+. +|++|+..+.+++||.|+ .+.+..+.+|...|..+..+++|. .+++++.||+|++||+...
T Consensus 171 k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQ-- 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQ-- 245 (735)
T ss_pred ccceeeeecCCcce-EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecccc--
Confidence 88999999999884 899999999999999998 777888889999999999999996 5889999999999999874
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
++++++..|...|+++..+|+-. .+.+|+.||.|..=++.+.
T Consensus 246 ------------rCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 246 ------------RCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------------ceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCc
Confidence 67888899999999999999988 6999999999999888773
No 83
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-26 Score=192.17 Aligned_cols=276 Identities=17% Similarity=0.314 Sum_probs=208.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCC-CCceEEEEeCCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg 201 (424)
+|.+-|.++.|.+.|+ .+|+|+.|++|+|||.... .+.+......+.|.+.|..+.|.+. -...+|+++.|+
T Consensus 11 ~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSD------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred CCcceeeeeeecccCc-eeeeccCCCcEEEEeccCC------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 6888999999999997 7999999999999997652 2456677788999999999999654 223799999999
Q ss_pred cEEEEeCCCC---CCCCcccceeeeecCCcceeeEEeeCCCC-cEEEEEeCCCeEEEEECCCCCCCCC---ee-------
Q 014472 202 QICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKP---VQ------- 267 (424)
Q Consensus 202 ~i~vwd~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~---~~------- 267 (424)
++.||.=... ...........+....+.|++++|.|... ..+|+++.||.|+||+.-....... ..
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999975321 11234444556667788999999999642 4578999999999998765432110 11
Q ss_pred EecccCCCeeEEEecCCC--CeEEEEEeCC-----CcEEEEECCCCC---CcceeecCCCCCEEEEEEcCCCC---cEEE
Q 014472 268 SVVAHQSEVNCLAFNPFN--EWILATGSTD-----KTVKLFDLRKIS---TALHTFDSHKEEVFQVGWNPKNE---TILA 334 (424)
Q Consensus 268 ~~~~~~~~v~~i~~~~~~--~~~l~~g~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~sp~~~---~~l~ 334 (424)
....+..+..|+.|+|.. +.+||.|+.+ +.+.||.....+ ..+.++.+|..+|+.++|.|+-. .+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 112466788999999742 2368888866 478899776533 34667779999999999999642 4899
Q ss_pred EEeCCCeEEEeeCCCCCccc------CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 335 SCCLGRRLMVWDLSRIDEEQ------TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 335 s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+++.|| |+||.+....... ......+-+.+.+..+.+|++.|+.+.|+-.|. +|+|.|.||+|++|+..-.
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehhhhhh
Confidence 999999 9999998533211 111122334567778899999999999999999 8999999999999987643
No 84
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=9.7e-29 Score=215.95 Aligned_cols=228 Identities=20% Similarity=0.365 Sum_probs=186.1
Q ss_pred CCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC
Q 014472 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~ 248 (424)
+.+..+.+|...|.++.|.|....+|++++.|+.|+||++.... .+++.+.+|..+|.+++|++++..++ +++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sf 278 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASFNNCGTSFL-SASF 278 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhccccCCeee-eeec
Confidence 44678899999999999999666699999999999999997632 46788999999999999999998655 9999
Q ss_pred CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCC
Q 014472 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 328 (424)
|+.|++||+.++++ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+|+ ++.++.+..|-++|..+.|-++
T Consensus 279 D~~lKlwDtETG~~---~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~ 353 (503)
T KOG0282|consen 279 DRFLKLWDTETGQV---LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDE 353 (503)
T ss_pred ceeeeeeccccceE---EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccC
Confidence 99999999999886 44443 3567899999999988999999999999999999 7899999999999999999999
Q ss_pred CCcEEEEEeCCCeEEEeeCCCCCcccCCCccC--------------------CCCCeee------------EEEcCCC--
Q 014472 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAE--------------------DGPPELL------------FIHGGHT-- 374 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~------------~~~~~h~-- 374 (424)
+. .+++++.|++++||+.+.....+...... ......+ ..+.||.
T Consensus 354 g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 GR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred Cc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 97 58899999999999988654332211110 0000111 1234564
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+.-..+.|||||. +|++|+.||.+.+||..+-.+
T Consensus 433 Gys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 433 GYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred CceeeEEEcCCCC-eEEeecCCccEEEeechhhhh
Confidence 3456789999999 699999999999999987643
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-27 Score=194.13 Aligned_cols=244 Identities=20% Similarity=0.342 Sum_probs=193.9
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC-ceEEEEeC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSGSD 199 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~ 199 (424)
.-.|.+.|++++.+ ++ ++|+|+.|-+|+|||+.+ ......+..|.+.|+++.|.+.-. ..|++|+.
T Consensus 39 ~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRK----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccccccceeEEEec--ce-eEeccCCCCcEEEEeccc----------hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 34689999999996 55 899999999999999988 455667788999999999987642 25999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
||.|.+|+... +..+..+++|.+.|+.++.+|.++ +..+.+.|+.+++||+-.++... +.. -....+.+
T Consensus 106 DG~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~-v~~---L~~~at~v 174 (362)
T KOG0294|consen 106 DGHIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAF-VLN---LKNKATLV 174 (362)
T ss_pred CCcEEEEEcCC------eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccce-eec---cCCcceee
Confidence 99999999854 356788889999999999999997 55688999999999998877422 222 23344559
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
.|+|.|.+ |+.++.+ .|-+|.+.+ ......+.. ...+.++.|-..+ .|++|+.|+.|.+||....
T Consensus 175 ~w~~~Gd~-F~v~~~~-~i~i~q~d~-A~v~~~i~~-~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~--------- 239 (362)
T KOG0294|consen 175 SWSPQGDH-FVVSGRN-KIDIYQLDN-ASVFREIEN-PKRILCATFLDGS--ELLVGGDNEWISLKDTDSD--------- 239 (362)
T ss_pred EEcCCCCE-EEEEecc-EEEEEeccc-HhHhhhhhc-cccceeeeecCCc--eEEEecCCceEEEeccCCC---------
Confidence 99999995 6666654 589998886 344333332 3567778876654 5889999999999999863
Q ss_pred CCCCCeeeEEEcCCCCCcceEEe--CCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 360 EDGPPELLFIHGGHTSKISDFSW--NPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.++..+.+|...|-++.+ .|.+. +|+|+|.||.|+|||+....-
T Consensus 240 -----~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 240 -----TPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred -----ccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccccc
Confidence 557778899999999984 45565 799999999999999987733
No 86
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=234.18 Aligned_cols=267 Identities=19% Similarity=0.350 Sum_probs=220.1
Q ss_pred EEEEEeccCCceeEEEecCCCCc---EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 117 QIIQQINHDGEVNRARYMPQNPF---LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~---~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
+.+-.+.-...-++++|.+.+.. +||.|..||.|.+||...... ......+.+...|.+.|.+|.|++...++
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~~~~~~la~~~~h~G~V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----NASEEVLATKSKHTGPVLGLDFNPFQGNL 131 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc----CcchHHHhhhcccCCceeeeeccccCCce
Confidence 33444455567788999987765 699999999999999876311 12234456677899999999999999889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++|+.||.|.|||++......... .....+.|.+++|+..-.++||+++.+|.+.|||+|..+. +..+..+.
T Consensus 132 LASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p---ii~ls~~~ 204 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP---IIKLSDTP 204 (1049)
T ss_pred eeccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc---ccccccCC
Confidence 9999999999999998754322221 2224678999999999899999999999999999998653 44444443
Q ss_pred --CCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 274 --SEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 274 --~~v~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
..+..++|+|++...+++++.|. .|.+||+|....+++++.+|...|.++.|++.+..+|++++.|+.|.+|+.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 35789999999988888887654 7999999998899999999999999999999998899999999999999999
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
++ +.+..+......+..+.|+|..+.++++++-||.|.|+.+....
T Consensus 285 tg--------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TG--------------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred Cc--------------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 85 66777777778899999999999889999999999999998764
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=197.39 Aligned_cols=265 Identities=20% Similarity=0.336 Sum_probs=215.9
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCC------CC------CCCCC------------------CCCC
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYS------KH------PSKPP------------------LDGA 167 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~------~~------~~~~~------------------~~~~ 167 (424)
+.+..+|.+.|++|+|++.+. ++++++.|++-.||... .. .++.+ ....
T Consensus 183 L~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 183 LATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred eeeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 345568999999999999875 89999999999999832 10 00000 0122
Q ss_pred CCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe
Q 014472 168 CSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (424)
Q Consensus 168 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~ 247 (424)
..|+..+.+|.+.|.+..|...+. .+++++.|.+..+||++++ ..+..+.+|....+.++-+|..+ ++++.+
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd~ELtHcstHptQr-LVvTsS 333 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG------EVVNILTGHDSELTHCSTHPTQR-LVVTSS 333 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC------ceeccccCcchhccccccCCcce-EEEEec
Confidence 346778899999999999999777 5999999999999999988 45677889999999999999875 778999
Q ss_pred CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 248 DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 248 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
.|.+.++||+|. ....+..+++|...|+++.|+.+.+ +++|+.|.+|++||+|++..++.++.. .++++.++.+.
T Consensus 334 rDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~ 408 (481)
T KOG0300|consen 334 RDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSK 408 (481)
T ss_pred cCceeEeccchh--hcceeeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeeec-CCccceeEeec
Confidence 999999999993 3456788999999999999998664 889999999999999999999999986 78999999998
Q ss_pred CCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCCcEEEEecCC
Q 014472 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iw~~~~ 406 (424)
.++ +++.-..+..|++||++.....+ -+-..-++|...|++++|..+-+ .-|.++|.|..+.=|++..
T Consensus 409 g~~-iIAiPhDNRqvRlfDlnG~RlaR----------lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 409 GHP-IIAIPHDNRQVRLFDLNGNRLAR----------LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCc-eEEeccCCceEEEEecCCCcccc----------CCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 876 78888888999999998643221 11223468999999999975532 1267889999999999876
Q ss_pred C
Q 014472 407 N 407 (424)
Q Consensus 407 ~ 407 (424)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 88
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=184.93 Aligned_cols=242 Identities=20% Similarity=0.256 Sum_probs=197.4
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..--+|..+|..++.+.++. -+|+|+.|..|.+||+.+ .+..+.+.+|.+.|+.++|+.... .+++|+
T Consensus 53 ktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~T----------Gkv~Rr~rgH~aqVNtV~fNeesS-Vv~Sgs 120 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNT----------GKVDRRFRGHLAQVNTVRFNEESS-VVASGS 120 (307)
T ss_pred eeecCCCceeeecccccccc-ccccCCCCceEEEEEccc----------CeeeeecccccceeeEEEecCcce-EEEecc
Confidence 34457999999999999887 689999999999999998 677889999999999999998766 899999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.++++||.++.. .++++.+......|.++.... +.|++|+.||+++.||+|.+.. .. .-...+|+|
T Consensus 121 fD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l---~s--Dy~g~pit~ 188 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL---SS--DYFGHPITS 188 (307)
T ss_pred ccceeEEEEcccCC----CCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeeccee---eh--hhcCCccee
Confidence 99999999998753 367788888889999998863 4677999999999999998774 11 224579999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEE--EEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV--GWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
++|+++++ ..++++.|+++++.|-.+ ++.+..+.+|...-..+ +++... ..+++|+.||.|.+||+...
T Consensus 189 vs~s~d~n-c~La~~l~stlrLlDk~t-GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~------ 259 (307)
T KOG0316|consen 189 VSFSKDGN-CSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDE------ 259 (307)
T ss_pred EEecCCCC-EEEEeeccceeeecccch-hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccc------
Confidence 99999998 577889999999999888 89999999998765444 455544 47899999999999999874
Q ss_pred CccCCCCCeeeEEEcCCCCC-cceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 357 EDAEDGPPELLFIHGGHTSK-ISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
..+..+..|... |.+++++|.-..++ ++. ++.+.+|.
T Consensus 260 --------~~~sk~~~~~~v~v~dl~~hp~~~~f~-~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 --------TQISKLSVVSTVIVTDLSCHPTMDDFI-TAT-GHGDLFWY 297 (307)
T ss_pred --------eeeeeeccCCceeEEeeecccCcccee-Eec-CCceecee
Confidence 334455555555 78999999987544 433 45566664
No 89
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=199.91 Aligned_cols=215 Identities=25% Similarity=0.444 Sum_probs=177.2
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCC-cEEEecCCCCeeeEEecCCCCceEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSP-DLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++..-+|.+.=++|+|+|-....+++|.--+.|++|...+ +.+.. ...+.+|+..|-.|+|+|...++|++
T Consensus 204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~--------g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST--------GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred eEEecccCccceeeecccccccccccCccccceEeeeecc--------CceeecCccccccccchhhhccCCccCceEEe
Confidence 4556689999999999995555688988889999999877 22322 23466799999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
||.||+|+|||++.+..... ...+.|.+.|+.|.|+...+ +||+|++||+++|||+|+-+..+++..++-|+.+|
T Consensus 276 cS~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eecCceEEEEEecCCCccce----eEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 99999999999998854322 22378999999999999887 88999999999999999988888999999999999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---------------cceeecCC--CCCEEEEEEcCCCCcEEEEEeCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKIST---------------ALHTFDSH--KEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---------------~~~~~~~~--~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
++|.|+|.....|++++.|..|.+||+..... |.+.+..| ...+..+.|+++-+.+|++.+.|
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 99999999888999999999999999864211 11122223 45688899999988899999999
Q ss_pred CeEEEee
Q 014472 340 RRLMVWD 346 (424)
Q Consensus 340 g~i~iwd 346 (424)
| +.||.
T Consensus 431 G-fnVfk 436 (440)
T KOG0302|consen 431 G-FNVFK 436 (440)
T ss_pred c-eeEEE
Confidence 9 66664
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6e-27 Score=220.49 Aligned_cols=241 Identities=23% Similarity=0.401 Sum_probs=206.2
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEE-EecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
|...+.+..|+. + .+++++.+++|++|+... ...+.. +.+|.+.|.++++.. +..+|++|+.|.+
T Consensus 207 ~~~~~~~~q~~~-~--~~~~~s~~~tl~~~~~~~----------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 207 DDHVVLCLQLHD-G--FFKSGSDDSTLHLWDLNN----------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKT 272 (537)
T ss_pred Ccchhhhheeec-C--eEEecCCCceeEEeeccc----------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCc
Confidence 567888888883 3 799999999999999987 444555 899999999999987 5558999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+++||..++ .+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.. +..+.+|..+|+++..+
T Consensus 273 ~rvWd~~sg------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~---l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 273 ERVWDCSTG------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC---LNLLRGHTGPVNCVQLD 340 (537)
T ss_pred EEeEecCCC------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce---EEEeccccccEEEEEec
Confidence 999999888 46778889999999998764 4667899999999999998765 77777899999999998
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+. ++++|+.|++|++||+++ .++++++.+|...|.++.+.+. ..+++|+.|+.|++||+++..
T Consensus 341 --~~-~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~----------- 403 (537)
T KOG0274|consen 341 --EP-LLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR----------- 403 (537)
T ss_pred --CC-EEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence 44 799999999999999997 8999999999999999998875 368999999999999999841
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 412 (424)
+++.++.+|...+..+.+. ++ +|++++.|+.|++||..++.....
T Consensus 404 --~c~~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 404 --KCIHTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred --hhhhhhcCCcccccccccc--cc-eeEeccccccEEEeecccCceeee
Confidence 4677788999888766654 45 799999999999999988865443
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=198.37 Aligned_cols=245 Identities=16% Similarity=0.270 Sum_probs=207.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEeCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+.|..+|.|+.|+.+.. .+|+|+.||.|+||.+.+ ..++..+. +|...|+++.|+.++. .+++++.|
T Consensus 260 MMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~t----------G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD 327 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIET----------GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFD 327 (508)
T ss_pred eecccceEEEeecccHH-HhhccCcCCcEEEEEEec----------chHHHHhhhhhccCeeEEEEccCcc-hhhccccc
Confidence 45789999999999887 899999999999999998 45566665 7999999999999988 59999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
.++++.-+.++ ++++.+.+|++.|+...|.++|.+++ +++.||+|++|+.++.++...... .+..-+|+++-
T Consensus 328 ~tvRiHGlKSG------K~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~-~~~d~~vnsv~ 399 (508)
T KOG0275|consen 328 QTVRIHGLKSG------KCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKP-LGTDYPVNSVI 399 (508)
T ss_pred ceEEEeccccc------hhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccC-CCCcccceeEE
Confidence 99999999888 45677889999999999999998665 999999999999999876332222 23456899999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC---CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.-|.++-.++++....+|.|-++. ++.++.+.. ..+...+++.+|.|+ ++.+.+.|+.+..|.+.++
T Consensus 400 ~~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG------- 469 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSG------- 469 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecC-------
Confidence 999888788999999999999887 577777753 345677888999997 6888999999999999886
Q ss_pred ccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 358 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
.+-..+.-|...|..++-+|..+ +|++-++||.+++|..
T Consensus 470 -------~LE~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 470 -------KLERTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLKLWKP 508 (508)
T ss_pred -------ceeeeeecccccccccccCcccc-hhhhhcccchhhhcCC
Confidence 44555667888899999999998 8999999999999963
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.6e-26 Score=198.15 Aligned_cols=245 Identities=21% Similarity=0.315 Sum_probs=200.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|...|+.+.|+|+.. .+++++.|-.|+||.... .........|..+|+.+..+|.|. ||++++.||
T Consensus 258 ~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~----------~s~~~~~~~h~~~V~~ls~h~tge-YllsAs~d~ 325 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPL----------SSEPTSSRPHEEPVTGLSLHPTGE-YLLSASNDG 325 (506)
T ss_pred cCcceEEEEEEeccchh-heeecCCcceEEeecccc----------ccCccccccccccceeeeeccCCc-EEEEecCCc
Confidence 47999999999999876 789999999999999877 233456778999999999999998 899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeee--cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
+....|++++.. +.... ...-.+++.+|||||- +|++|..||.|+|||+..+.. +..|.+|.++|..|
T Consensus 326 ~w~Fsd~~~g~~------lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 326 TWAFSDISSGSQ------LTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAI 395 (506)
T ss_pred eEEEEEccCCcE------EEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccc---cccCCCCCCceeEE
Confidence 999999988743 22211 1234589999999984 899999999999999998764 77888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+|+.+| |.||++..|+.|++||+|+. +...++.. ....+.++.|.+.|. +|+.++.|=.|.+++-.+.
T Consensus 396 ~FsENG-Y~Lat~add~~V~lwDLRKl-~n~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k-------- 464 (506)
T KOG0289|consen 396 SFSENG-YWLATAADDGSVKLWDLRKL-KNFKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTK-------- 464 (506)
T ss_pred EeccCc-eEEEEEecCCeEEEEEehhh-cccceeeccccccceeEEEcCCCC-eEEeecceeEEEEEecccc--------
Confidence 999876 57999999999999999984 45555553 234799999999996 6888877766666654332
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
....+..+..|.+..+.+.|..... +++++|.|..++++.+
T Consensus 465 ----~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 465 ----SWTEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRLYAL 505 (506)
T ss_pred ----cceeeehhhhcccccceeeecccce-EEeeccchhheEEeec
Confidence 1255666677888889999999988 6999999999998865
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.2e-25 Score=181.94 Aligned_cols=242 Identities=20% Similarity=0.321 Sum_probs=196.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.+|.+.|-.++|+|..+.++|+++.|.+|++||+.. .++........+.+ -+.|+|+|. ++++++.|.
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~----------~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD 128 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS----------GKCTARIETKGENI-NITWSPDGE-YIAVGNKDD 128 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc----------CcEEEEeeccCcce-EEEEcCCCC-EEEEecCcc
Confidence 478899999999999989999999999999999988 56666665444444 688999998 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
.|...|.++.+..... .....++.+.|+.++. +|......|+|.|..... .++++.+++|+....||.|
T Consensus 129 ~it~id~r~~~~~~~~-------~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyps---Lkpv~si~AH~snCicI~f 197 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEE-------QFKFEVNEISWNNSND-LFFLTNGLGCVEILSYPS---LKPVQSIKAHPSNCICIEF 197 (313)
T ss_pred cEEEEEecccceeehh-------cccceeeeeeecCCCC-EEEEecCCceEEEEeccc---cccccccccCCcceEEEEE
Confidence 9999999876432221 2456788899997665 444555679999988775 6679999999999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|+|+ .||+|+.|..+.+||+.. --+++.+.-+.-+|..+.|+.+|+ +||+++.|-.|-|=++.++..
T Consensus 198 ~p~Gr-yfA~GsADAlvSLWD~~E-LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~--------- 265 (313)
T KOG1407|consen 198 DPDGR-YFATGSADALVSLWDVDE-LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDR--------- 265 (313)
T ss_pred CCCCc-eEeeccccceeeccChhH-hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCe---------
Confidence 99999 599999999999999987 577888888999999999999996 899999999999999988742
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC---------CcEEEEecC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED---------NILQIWQMA 405 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------~~i~iw~~~ 405 (424)
+... .+.++...++|+|... |||-+++| |.+++|-+.
T Consensus 266 -----~~eI-~~~~~t~tVAWHPk~~-LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 266 -----VWEI-PCEGPTFTVAWHPKRP-LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred -----EEEe-eccCCceeEEecCCCc-eeeEEecCCCCccccccceeEEecCC
Confidence 2222 3567889999999998 67766644 456666543
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=201.84 Aligned_cols=270 Identities=19% Similarity=0.283 Sum_probs=209.8
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC---CC----CCCCCCcEEE-ecCCCCeeeEEecCC
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP---PL----DGACSPDLRL-RGHSTEGYGLSWSKF 189 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~---~~----~~~~~~~~~~-~~h~~~v~~l~~~~~ 189 (424)
+.....|.-+|.+++++|++. +..+++.+|+|.=|++.+..... +. .....+...- .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 344557999999999999987 78899999999999987643221 00 0011122222 389999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe
Q 014472 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
+. +|++|+.|..|.||+.++. ..+..+.+|.+.|.+++|-.....++ +++.|++|++|++..... +.++
T Consensus 214 gk-ylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~---vetl 282 (479)
T KOG0299|consen 214 GK-YLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSY---VETL 282 (479)
T ss_pred Cc-EEEecCCCceEEEecCccc------chhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHH---HHHH
Confidence 98 8999999999999999877 34566889999999999987665555 899999999999998654 7778
Q ss_pred cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 270 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.+|.+.|..|....... ++.+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. -|++|+.+|.|.+|++.+
T Consensus 283 yGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence 89999999998887665 677788999999999954 5556788889999999998776 388999999999999987
Q ss_pred CCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+.......+..-.+.+ ..-.+...|++++..|... ++++|+.+|+|++|.+.++
T Consensus 358 Kkplf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cCceeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 64332211111000000 0012234899999999888 8999999999999999998
No 95
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7e-27 Score=202.37 Aligned_cols=280 Identities=24% Similarity=0.324 Sum_probs=211.3
Q ss_pred HhhhcCCC--CCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCC-----CCCcccCCCCCcCCCC
Q 014472 34 LVITHALE--WPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLD-----DSENDARHYDDDRSDF 106 (424)
Q Consensus 34 ~~~~~~~~--~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~ 106 (424)
++..|.+- -+.|+++|+-.+.+. +-.-..+.+||... .|.||.+.+-.. ..-.-.....
T Consensus 164 lYvHHD~ilpafPLC~ewld~~~~~---~~~gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~~LGs~~sk~~------ 229 (463)
T KOG0270|consen 164 LYVHHDFILPAFPLCIEWLDHGSKS---GGAGNYVAIGTMDP-----EIEIWDLDIVDAVLPCVTLGSKASKKK------ 229 (463)
T ss_pred eeEecceeccCcchhhhhhhcCCCC---CCCcceEEEeccCc-----eeEEeccccccccccceeechhhhhhh------
Confidence 34445444 446899999874322 22236788999643 588888764211 1100000000
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEe
Q 014472 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW 186 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 186 (424)
...++ +-...-+|..+|..++|+..-+++||+|+.|.+|.+||+.+ .++..++..|...|.+++|
T Consensus 230 ----~k~~k-~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~----------g~p~~s~~~~~k~Vq~l~w 294 (463)
T KOG0270|consen 230 ----KKKGK-RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT----------GKPKSSITHHGKKVQTLEW 294 (463)
T ss_pred ----hhhcc-cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC----------CCcceehhhcCCceeEEEe
Confidence 00111 11223469999999999999889999999999999999998 6778888899999999999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCe
Q 014472 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
+|..+.+|++|+.|++|.+.|.+...... ..++ ..+.|..++|.|...+.|.++..||+|+-+|+|+.. +++
T Consensus 295 h~~~p~~LLsGs~D~~V~l~D~R~~~~s~-----~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~v 366 (463)
T KOG0270|consen 295 HPYEPSVLLSGSYDGTVALKDCRDPSNSG-----KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPV 366 (463)
T ss_pred cCCCceEEEeccccceEEeeeccCccccC-----ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC--Cce
Confidence 99999899999999999999998632211 1122 467899999999999999999999999999999976 578
Q ss_pred eEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--ceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEE
Q 014472 267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344 (424)
Q Consensus 267 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~i 344 (424)
.++++|.++|.+|++++..++++++++.|+.+++|++.. ..+ +......-+...|.++.|+-..+|+.|+..+.++|
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~-~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV-DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC-CCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 999999999999999999999999999999999999975 222 11111112347788889988889999999999999
Q ss_pred eeCCCCC
Q 014472 345 WDLSRID 351 (424)
Q Consensus 345 wd~~~~~ 351 (424)
||+.+..
T Consensus 446 wd~~~~~ 452 (463)
T KOG0270|consen 446 WDIFTNS 452 (463)
T ss_pred eecccCh
Confidence 9998753
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=197.22 Aligned_cols=245 Identities=20% Similarity=0.324 Sum_probs=198.6
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
-.+.++...|. ...+++|+.|..+.++|... .+....+.||...|+.+.++|+.. .+++++.|..|+|
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s----------~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPS----------NQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecch----------hhhhhhccCcceEEEEEEeccchh-heeecCCcceEEe
Confidence 46777888886 34899999999999999987 466778999999999999999877 6999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc--cCCCeeEEEecC
Q 014472 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFNP 283 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~i~~~~ 283 (424)
|....... ......|..+|+.+..+|.|.+++ +++.||+..+.|++++.. +..... ..-.+++.+|+|
T Consensus 288 ws~~~~s~------~~~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 288 WSVPLSSE------PTSSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred eccccccC------ccccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcC
Confidence 99876543 344566999999999999999776 899999999999999875 333221 234589999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
+|- +|++|..||.++|||+.+ ...+..|.+|.++|..++|+.+| ++|++++.|+.|++||++.....+.
T Consensus 358 DgL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt-------- 426 (506)
T KOG0289|consen 358 DGL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKT-------- 426 (506)
T ss_pred Cce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccce--------
Confidence 996 899999999999999998 56889999999999999999999 6899999999999999998643211
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+.... ...|.++.|.+.|.+ |+.+|.|=.|++++-.+..+
T Consensus 427 ----~~l~~-~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 427 ----IQLDE-KKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred ----eeccc-cccceeEEEcCCCCe-EEeecceeEEEEEecccccc
Confidence 11121 236999999999995 66666666666665434333
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=188.32 Aligned_cols=247 Identities=16% Similarity=0.307 Sum_probs=190.3
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-.+.|.+|+|+|+...++++|+.||+||+|+++.. +...+ .....|.++|.+++|+.+|. .+++|+.|+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-------g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~ 96 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-------GQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQA 96 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecC-------Ccccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCce
Confidence 45688999999977778989999999999999872 12222 44566999999999999997 69999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCC-cEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
++||+.+++ ...+..|.++|..+.|-+... .+|++|+-|++|+.||+|+.. ++.++. ....++++..-
T Consensus 97 k~wDL~S~Q-------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---pv~t~~-LPeRvYa~Dv~ 165 (347)
T KOG0647|consen 97 KLWDLASGQ-------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---PVATLQ-LPERVYAADVL 165 (347)
T ss_pred EEEEccCCC-------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC---eeeeee-ccceeeehhcc
Confidence 999998873 344667999999999987543 367899999999999999855 355543 35677777654
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
.+ +++++..++.|.+|+|++.....+... .-+-.+.+++..++.+. .+.|+-.|.+.|..+.....
T Consensus 166 --~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~--------- 232 (347)
T KOG0647|consen 166 --YP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNP--------- 232 (347)
T ss_pred --Cc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCc---------
Confidence 33 788889999999999987433222222 23446889999988874 68999999999999987532
Q ss_pred CCCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 362 GPPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..-+.++.|. ..|++++|+|.-. .|+|+|.||++.+||-...
T Consensus 233 ---~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 233 ---KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ---cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhh
Confidence 1122223332 3588899999877 7999999999999997654
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=210.86 Aligned_cols=337 Identities=16% Similarity=0.231 Sum_probs=244.8
Q ss_pred hhHHHHhhhcCCCCCccEEEEccC-CCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCCCCC-----c--c--cCC
Q 014472 29 PFLYDLVITHALEWPSLTVEWLPD-REEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSE-----N--D--ARH 98 (424)
Q Consensus 29 ~~~y~~~~~~~~~~p~~~~~~~p~-~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~-----~--~--~~~ 98 (424)
...|.+|+.-..-| .++-+|. ...+.....+...|+. ...++.|++|.+..-.+... . + .-.
T Consensus 360 gk~~s~lyHS~ciW---~Ve~~p~nv~~~~~aclp~~cF~T-----CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~ 431 (1080)
T KOG1408|consen 360 GKCSSMLYHSACIW---DVENLPCNVHSPTAACLPRGCFTT-----CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIP 431 (1080)
T ss_pred cceeeeeeccceee---eeccccccccCcccccCCccceeE-----ecCCCcEEEeecccccccceeecccchhhhhcCc
Confidence 44677777766666 5667774 3333334455555543 34778899998865212111 1 1 111
Q ss_pred CCCcC-CCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC
Q 014472 99 YDDDR-SDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH 177 (424)
Q Consensus 99 ~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h 177 (424)
|.+.+ ..+...+.+...-.......-.-.+.+++.+|+++ .||+|..-|+++||++.. ......+.+|
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~----------l~~~~~~eAH 500 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQE----------LEYTCFMEAH 500 (1080)
T ss_pred cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehh----------hhhhhheecc
Confidence 22222 11212222222223344556677899999999997 799999999999999988 4556678899
Q ss_pred CCCeeeEEecCC--CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCC-CcEEEEEeCCCeEEE
Q 014472 178 STEGYGLSWSKF--KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLI 254 (424)
Q Consensus 178 ~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~s~~~dg~i~i 254 (424)
..+|.||.|+.. +..+|++++.|..|+|+|+... +..++.+.+|...|+++.|-..| +.-.++++.|..|.+
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 999999999854 3447999999999999999643 45677888999999999998766 223458899987764
Q ss_pred EECCCCCC--CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC---CCCCEEEEEEcCCC
Q 014472 255 WDLRTPSV--SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKN 329 (424)
Q Consensus 255 ~d~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~ 329 (424)
--.+.... ..+..+-......++.|+..|..+ ++++++.|+.|+|||+.+ ++..+.|++ |.+....+...|.|
T Consensus 576 r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 576 RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSG 653 (1080)
T ss_pred ehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCc
Confidence 33322111 001111112245789999999887 699999999999999998 777777764 66788999999999
Q ss_pred CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
- +||+.+.|.++.++|+.++ +++....||...|+.+.|.+|-+ .|++.+.||+|.||++...
T Consensus 654 i-Y~atScsdktl~~~Df~sg--------------EcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 654 I-YLATSCSDKTLCFVDFVSG--------------ECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred c-EEEEeecCCceEEEEeccc--------------hhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECchh
Confidence 4 8999999999999999986 67888899999999999999999 5888899999999999764
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=205.34 Aligned_cols=256 Identities=18% Similarity=0.263 Sum_probs=204.8
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.+.|..+.|.++.. .|++|+.|..|++|+... .......++.+..+.|++++|.+++. .+++++.|+.
T Consensus 173 ~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~--------~k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~ 242 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLG--------EKSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKN 242 (459)
T ss_pred ccccccceeEEccCcc-hhhhcchhhhhhhhhccc--------chhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCc
Confidence 5899999999999754 799999999999999987 33445677888899999999999888 6888999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+++|++... +...++.+|++.|+++.|...... +++|+.|.+|++||+....+.+.+. ..+.+..|..+
T Consensus 243 ~r~Wnvd~~------r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~~~ 311 (459)
T KOG0288|consen 243 LRLWNVDSL------RLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIVCS 311 (459)
T ss_pred eeeeeccch------hhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheecccc----ccccccceEec
Confidence 999999776 446677889999999999877654 6699999999999999866533332 24556667665
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+ ..+++|..|+.|++||+|. ..+......+. .|+++..++++.. |.+++.|.++.+.|+++..-.+..
T Consensus 312 ~---~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~------ 379 (459)
T KOG0288|consen 312 I---SDVISGHFDKKVRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTF------ 379 (459)
T ss_pred c---eeeeecccccceEEEeccC-CceeeEeecCc-ceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEe------
Confidence 2 3688999999999999998 67788888754 9999999999975 567799999999999985432111
Q ss_pred CCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 014472 363 PPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP 416 (424)
Q Consensus 363 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 416 (424)
.......+| -.+.+.|+|++.| +++||.||.|+||++.++.++..-...
T Consensus 380 --sA~g~k~as--DwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 380 --SAEGFKCAS--DWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred --ecccccccc--ccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccC
Confidence 001111233 3789999999994 999999999999999999887544433
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.6e-26 Score=197.62 Aligned_cols=247 Identities=17% Similarity=0.281 Sum_probs=202.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|.+++.+++++ +||+|+.|..|.||+..+ ..++..+.+|.+.|.+++|-. +++.|++++.|+.
T Consensus 200 ~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t----------~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drs 267 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDT----------LEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRS 267 (479)
T ss_pred cccceeEEEEEcCCCc-EEEecCCCceEEEecCcc----------cchhhcccccccceeeeeeec-CccceeeeecCCc
Confidence 8999999999999997 899999999999999998 677888999999999999987 4457999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|++|+++.. ..+..+.+|.+.|..|....-++ ++.+|+.|+++++|++.... ...+.++.+.+-|++|-
T Consensus 268 vkvw~~~~~------s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 268 VKVWSIDQL------SYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFI 336 (479)
T ss_pred eEEEehhHh------HHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEe
Confidence 999999755 45666788999999998887665 55567799999999994432 33456888899999998
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CC-----------CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SH-----------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~-----------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+. .|++|+.+|.|.+|++-+ .+|+.+.. +| +..|++++..|... ++|+|+.+|.|++|.+..+
T Consensus 337 n~~--HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 337 NDE--HFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccc--ceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence 655 489999999999999987 56665543 22 23899999999885 8999999999999999875
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
-. +..+++.+. -.+.|++++|+++|+++++..+....+--|-....
T Consensus 413 ~r----------~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 413 LR----------AINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred cc----------ccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 32 124455544 46789999999999987887787777776766554
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=210.35 Aligned_cols=245 Identities=20% Similarity=0.257 Sum_probs=204.2
Q ss_pred EeccCCceeE-EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 121 QINHDGEVNR-ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 121 ~~~h~~~v~~-i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+|.+-|.. ++|.+..+..+++|+.|+.|.+|.... ..|...+.+|...|.+++...++. +++||.
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~----------~~P~~~LkgH~snVC~ls~~~~~~--~iSgSW 120 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ----------AEPLYTLKGHKSNVCSLSIGEDGT--LISGSW 120 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCC----------CCchhhhhccccceeeeecCCcCc--eEeccc
Confidence 3457777777 888864444799999999999999987 688899999999999999776554 999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.++++|.... ....+.+|...|+++..-|.+ .+++|+.|.+|++|.-.+ .+.++.+|.+.|+.+
T Consensus 121 D~TakvW~~~~--------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 121 DSTAKVWRIGE--------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGL 185 (745)
T ss_pred ccceEEecchh--------hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc-----hhhhhccchhheeee
Confidence 99999998753 344478999999999999987 456999999999997633 467888999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
++-+++. |++++.||.|++|++. +..+..+.+|+.-|.++...++++ ++++++.|++++||+..
T Consensus 186 ~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~----------- 249 (745)
T KOG0301|consen 186 AVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD----------- 249 (745)
T ss_pred EEecCCC--eEeecCCceEEEEecc--CceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC-----------
Confidence 9999775 7899999999999994 689999999999999999766664 79999999999999986
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 014472 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDL 415 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 415 (424)
++...+.-....|+++.+-++|. |++|+.||.|+||........+++..
T Consensus 250 -----e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~R~As~evl 298 (745)
T KOG0301|consen 250 -----ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKDRKASDEVL 298 (745)
T ss_pred -----ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEecccccCCHHHH
Confidence 33344443345799999999998 78889999999999987766554443
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=197.27 Aligned_cols=239 Identities=20% Similarity=0.313 Sum_probs=188.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+..+.|+++.|.+++.+ +++++.|+.+++|++.. .....++.+|.+.|+++.|..... .+++|+.|.+
T Consensus 217 Gs~g~it~~d~d~~~~~-~iAas~d~~~r~Wnvd~----------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRt 284 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKH-VIAASNDKNLRLWNVDS----------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRT 284 (459)
T ss_pred ccCCCcceeeecCCCce-EEeecCCCceeeeeccc----------hhhhhhhcccccceeeehhhcccc-ceeeccccch
Confidence 34578999999999985 44557899999999988 566778999999999999988665 4999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
|++||+....+.+.+- ..+.+++|..+ ...+++|..|++|++||+|+... ......+ +.|+++..+
T Consensus 285 iK~WDl~k~~C~kt~l-------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~---~~sv~~g-g~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVL-------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK---TRSVPLG-GRVTSLDLS 350 (459)
T ss_pred hhhhhhhhhheecccc-------ccccccceEec---ceeeeecccccceEEEeccCCce---eeEeecC-cceeeEeec
Confidence 9999998764433321 24567777776 23567999999999999999764 5555554 489999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSH----KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+++.. +.+.+.|.++.+.|+|+ ......+.+. ....+.+.|||++. |+++|+.||.|+||++.+++.+.
T Consensus 351 ~~g~~-lLsssRDdtl~viDlRt-~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~---- 423 (459)
T KOG0288|consen 351 MDGLE-LLSSSRDDTLKVIDLRT-KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEK---- 423 (459)
T ss_pred cCCeE-EeeecCCCceeeeeccc-ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEE----
Confidence 98885 56668999999999998 5555555532 23489999999996 79999999999999999875422
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.....+....|++++|+|.|.+ +++++.++.+.+|.
T Consensus 424 --------~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 424 --------VLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTLWT 459 (459)
T ss_pred --------EeccCCCCcceEEEEEcCCCch-hhcccCCcceEecC
Confidence 2222222236999999999996 67778999999994
No 103
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=206.50 Aligned_cols=304 Identities=14% Similarity=0.218 Sum_probs=228.6
Q ss_pred HHHhhhcCCCCCccEEEEccCCCCCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCC
Q 014472 32 YDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGC 111 (424)
Q Consensus 32 y~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (424)
|.-+-+..++.-.-+++|.|.+... ..+++ . .+|.+....++...... .
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~-------~~lv~-l-----~nNtv~~ysl~~s~~~~------------------p 359 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTE-------NTLVL-L-----ANNTVEWYSLENSGKTS------------------P 359 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcc-------eeEEE-e-----ecCceEEEEeccCCCCC------------------c
Confidence 3445555556556689999987433 23333 2 22344444443210100 0
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC
Q 014472 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
...+..-+...+|+..|.+++++.++. ++++|+ .+.++||+..+ .++++++... -+.+..|.|.+.
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~-~~~Sga-~~SikiWn~~t----------~kciRTi~~~--y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSI-LLASGA-GESIKIWNRDT----------LKCIRTITCG--YILASKFVPGDR 425 (888)
T ss_pred cccccceeeeccchhheeEEEeecCce-eeeecC-CCcEEEEEccC----------cceeEEeccc--cEEEEEecCCCc
Confidence 112334455678999999999998764 677654 67899999987 5666666533 788999999655
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC----CCCee
Q 014472 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV----SKPVQ 267 (424)
Q Consensus 192 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~----~~~~~ 267 (424)
++++|...|.+.+||+.+... +.....|.+.|++++.+|++..+ ++|+.|.+|++||..-... .+.+-
T Consensus 426 -~Iv~G~k~Gel~vfdlaS~~l------~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 426 -YIVLGTKNGELQVFDLASASL------VETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred -eEEEeccCCceEEEEeehhhh------hhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccCcccceee
Confidence 899999999999999977633 44456799999999999999865 5999999999999753111 11111
Q ss_pred Ee-----cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 014472 268 SV-----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 268 ~~-----~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
.+ -.-...|.|++++|++. +||++--|.+++||-+.+ -+....+-+|.-||.|+..+|++. +++|||.|.+|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnV 574 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNV 574 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCce
Confidence 11 12357899999999998 699999999999999998 456677889999999999999996 89999999999
Q ss_pred EEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 343 MVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+||-+.-+. +...+-+|...|.++.|.|... ++.++|.|+.|+-||-..
T Consensus 575 KiWGLdFGD--------------CHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 575 KIWGLDFGD--------------CHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred EEeccccch--------------hhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhh
Confidence 999998874 4555678999999999999776 799999999999997654
No 104
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=192.92 Aligned_cols=218 Identities=18% Similarity=0.309 Sum_probs=163.9
Q ss_pred cEEEEEE-eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 115 KVQIIQQ-INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 115 ~~~~~~~-~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
.+++.++ .+|..+|..+.|+|+++ ++++|+.+..+.+||..+ +...... -.+|...+.+++|.|++. .
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~t--------gd~~~~y-~~~~~~S~~sc~W~pDg~-~ 326 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDT--------GDLRHLY-PSGLGFSVSSCAWCPDGF-R 326 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeeccCCc--------chhhhhc-ccCcCCCcceeEEccCCc-e
Confidence 3555554 57999999999999997 566667778899999988 2222221 123568899999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccc--------------------------e----------eeeecCCcceeeEEeeC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEA--------------------------M----------QIFKVHEGVVEDVAWHL 237 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~--------------------------~----------~~~~~~~~~v~~i~~~~ 237 (424)
+++|+.|+.+..||++..... .++. + ..+..-..+|++++.+.
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~ 405 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK 405 (519)
T ss_pred eEecCCCCcEEEecCCcchhh-cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC
Confidence 999999999999999764211 0000 0 00111234677777777
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC--eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC
Q 014472 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 315 (424)
++...+ +.-.+..+++||+.... .+..+.+|+.. +-.-+|-..+..++|+|+.|+.|+||+.++ +.++..+.+
T Consensus 406 d~k~~L-vnL~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsG 480 (519)
T KOG0293|consen 406 DGKLAL-VNLQDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSG 480 (519)
T ss_pred CCcEEE-EEcccCeeEEeecchhh---HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecC
Confidence 776444 55667788888888544 35666677654 333456655556899999999999999998 899999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 316 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
|...|++++|+|..+.+||+++.||+|+||-...
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999999999998764
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.5e-25 Score=214.20 Aligned_cols=262 Identities=19% Similarity=0.307 Sum_probs=205.9
Q ss_pred eccC-CceeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCC--CCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 122 INHD-GEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLD--GACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 122 ~~h~-~~v~~i~~~p~~~~~latg~--~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++|. ..|.+|..+|++. .+|||+ .||.++||+...-....... ...+.+.++..|.+.|.|+.|+|+|. +||+
T Consensus 9 v~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEee
Confidence 3444 5689999999997 899999 89999999987643222111 12345667788999999999999998 8999
Q ss_pred EeCCCcEEEEeCCCC------------CCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC
Q 014472 197 GSDDAQICLWDINAA------------PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
|+.|+.|.||..... .....++....+.+|...|.+++|+|++. ++|+++.|++|.||+.++..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~--- 162 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE--- 162 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce---
Confidence 999999999998731 11244567788899999999999999876 77899999999999999964
Q ss_pred CeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCC------CCCEEEEEEcCCCCcEEEEEeC
Q 014472 265 PVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH------KEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 265 ~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.+..+.+|.+.|-.+.|+|-|+ +||+-+.|++|+||++.. ....+.+..+ ......+.|||+|. +|++...
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA 239 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNA 239 (942)
T ss_pred eeeeeecccccccceEECCccC-eeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcC-eecchhh
Confidence 4788899999999999999999 599999999999999776 3333333322 34678999999997 5666532
Q ss_pred ----CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC------C---------Cc-EEEEEeCCCc
Q 014472 339 ----GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC------E---------DW-VISSVAEDNI 398 (424)
Q Consensus 339 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~---------~~-~l~s~~~d~~ 398 (424)
-.++.|.+-.+. ..-..+-||..++..++|+|. . .| ++|+||.|++
T Consensus 240 ~n~~~~~~~IieR~tW--------------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS 305 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTW--------------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS 305 (942)
T ss_pred ccCCcceeEEEecCCc--------------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence 235777776554 334556799999999999982 1 11 7899999999
Q ss_pred EEEEecCC
Q 014472 399 LQIWQMAE 406 (424)
Q Consensus 399 i~iw~~~~ 406 (424)
|-||....
T Consensus 306 lSVW~T~~ 313 (942)
T KOG0973|consen 306 LSVWNTAL 313 (942)
T ss_pred EEEEecCC
Confidence 99998754
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.8e-25 Score=203.57 Aligned_cols=239 Identities=24% Similarity=0.318 Sum_probs=204.4
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeee-EEecCCCCceEEEEeC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSD 199 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~ 199 (424)
..+|...|..+++.+.. .+++++.||++++|+-.. ........+.+|.+-|.. +++.+.....|++|+.
T Consensus 10 l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~--------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKG--------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eccCccchheeEecCCe--EEeecCCCCceeeeeccC--------cccccceecccCcceeeccceeccccCcceEeecc
Confidence 34799999999987744 689999999999999765 445556677888887766 8888755557999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
|.+|.+|.+.+. .++..+.+|.+.|.+++...++. +++|+-|.++++|-+... ...+.+|...|.++
T Consensus 80 D~~i~v~~~~~~------~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l-----~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 80 DTTIIVFKLSQA------EPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL-----VYSLQGHTASVWAV 146 (745)
T ss_pred cceEEEEecCCC------CchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh-----hcccCCcchheeee
Confidence 999999998765 56778899999999999777764 569999999999987653 34578999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA 359 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 359 (424)
+.-|.+ .++||+.|.+|++|.- +..++++.+|...|..+++-+++. |++|+.||.|++|++..
T Consensus 147 ~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g---------- 209 (745)
T KOG0301|consen 147 ASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG---------- 209 (745)
T ss_pred eecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC----------
Confidence 999977 4889999999999964 578899999999999999999874 78999999999999954
Q ss_pred CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 360 EDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 360 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
+++..+.||++.|++++...++. +++|+|+|++++||+..
T Consensus 210 -----e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 210 -----EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -----ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 77888999999999999777676 79999999999999986
No 107
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.6e-24 Score=183.46 Aligned_cols=208 Identities=18% Similarity=0.320 Sum_probs=174.8
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+....+|...|+++.|+.++. +||||..+|.|+||...+ ......+..-...+.=+.|+|.+. .|++|
T Consensus 99 ~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~st----------g~~~~~~~~e~~dieWl~WHp~a~-illAG 166 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVST----------GGEQWKLDQEVEDIEWLKWHPRAH-ILLAG 166 (399)
T ss_pred eeEecCCCCceEEEEEccCce-EEEecCCCccEEEEEccc----------CceEEEeecccCceEEEEeccccc-EEEee
Confidence 455668999999999999997 999999999999999988 344455555566788899999766 89999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC--------------
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------- 263 (424)
+.||.+-+|.+... ...+.+.+|..++++-.|.|+|+++ +++..||+|++|++.++...
T Consensus 167 ~~DGsvWmw~ip~~------~~~kv~~Gh~~~ct~G~f~pdGKr~-~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQ------ALCKVMSGHNSPCTCGEFIPDGKRI-LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cCCCcEEEEECCCc------ceeeEecCCCCCcccccccCCCceE-EEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 99999999999765 2456788999999999999999865 59999999999999875321
Q ss_pred ------------------------------------------------------------------------------CC
Q 014472 264 ------------------------------------------------------------------------------KP 265 (424)
Q Consensus 264 ------------------------------------------------------------------------------~~ 265 (424)
..
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 11
Q ss_pred eeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 266 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
++....|..+|..+.|.+ .. .|++++.+|.|+.||.|+ ++.+.++.+|...|.+++.+|+.+ +++++|.|++.+||
T Consensus 320 ~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 320 LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDART-GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVF 395 (399)
T ss_pred hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeeccc-cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEE
Confidence 122235777889999988 45 588999999999999998 899999999999999999999996 79999999999999
Q ss_pred eCC
Q 014472 346 DLS 348 (424)
Q Consensus 346 d~~ 348 (424)
+..
T Consensus 396 ~v~ 398 (399)
T KOG0296|consen 396 EVP 398 (399)
T ss_pred ecC
Confidence 864
No 108
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=191.68 Aligned_cols=263 Identities=19% Similarity=0.284 Sum_probs=202.5
Q ss_pred ccCCceeEEEecCCCC-cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 123 NHDGEVNRARYMPQNP-FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.|.+.|++++|+|... .++|+|..-|.|-+||+.... ........+..|.++|.+|.|+|.+...+++.|.||
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC------CccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 4889999999999765 799999999999999996321 112335567789999999999999988999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
+|++-|++..... .+.....-...+.++.|+...+.++ .+..=|.+.+||+|++.. ....+..|...|++|++
T Consensus 258 tiR~~D~~~~i~e----~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s--~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 258 TIRLQDFEGNISE----EVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGS--EYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeeeeecchhhH----HHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCc--cchhhhhhhcccceeec
Confidence 9999999876332 1222222345677888888877665 666667999999998764 34455678889999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCC---cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+|..+++|||++.|++++|||+|.... |+.....|...|.++.|||.+.. |++.+.|..|+|||.......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~----- 404 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK----- 404 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccccc-----
Confidence 999999999999999999999997532 33455579999999999999986 889999999999998632211
Q ss_pred cCCCCCeeeEEEcC-CCC--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 359 AEDGPPELLFIHGG-HTS--KISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 359 ~~~~~~~~~~~~~~-h~~--~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
. ++.....|.. +.. ......|.|+.. +|+.|..-..|-|++-..+.
T Consensus 405 --~-~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 405 --D-EPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred --C-CccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE
Confidence 0 1122222211 111 245678999888 79999988999999998886
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2e-25 Score=183.83 Aligned_cols=230 Identities=23% Similarity=0.417 Sum_probs=183.1
Q ss_pred EecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC--Ccc----cc---eeeeecCCcceeeEEeeCCCCcEEE
Q 014472 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN--KSL----EA---MQIFKVHEGVVEDVAWHLRHEYLFG 244 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~----~~---~~~~~~~~~~v~~i~~~~~~~~~~~ 244 (424)
...|.+.|.+|...+....++++|+.||.|.+||++..... .-+ .+ ...-.+|.-.|.++.|-|.+.-+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 34588999999999887779999999999999999865411 000 11 1122468889999999998888999
Q ss_pred EEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCC--CeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEE
Q 014472 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--EWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 322 (424)
+++-|.+++|||..+.+. ...++ .++.|++-+++|-. ..++|+|..+-.|++.|+.+ +..-+++.+|...|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~---a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQE---AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLA 193 (397)
T ss_pred cccccceEEEeeccccee---eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEE
Confidence 999999999999998653 33332 46778888888843 35788898999999999998 8899999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEeeCCCC-CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 323 VGWNPKNETILASCCLGRRLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
+.|+|..+.+|++|+.||.|++||++.. ++....+......+..+..-..|.+.|++++|+.++.+ +++.+.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hhhccCccceEE
Confidence 9999999999999999999999999876 33333322222223334456789999999999999995 788889999999
Q ss_pred EecCCCCC
Q 014472 402 WQMAENIY 409 (424)
Q Consensus 402 w~~~~~~~ 409 (424)
|+...|.-
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99998854
No 110
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=208.74 Aligned_cols=215 Identities=17% Similarity=0.317 Sum_probs=169.2
Q ss_pred EEe-cCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCC----------------------------C----C-----
Q 014472 173 RLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAP----------------------------K----N----- 214 (424)
Q Consensus 173 ~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------------------------~----~----- 214 (424)
.+. +|.+.|+++.|+++|. |||+|+.||.|+||.+.... . .
T Consensus 261 e~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 345 7999999999999998 89999999999999986600 0 0
Q ss_pred -----------------CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 215 -----------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 215 -----------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
-.-+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+ +..+ .|...|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C---L~~F-~HndfVT 413 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC---LKVF-SHNDFVT 413 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcce---eeEE-ecCCeeE
Confidence 0005567788999999999999865 556999999999999998665 5544 5999999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
||+|+|-..++|++|+-||.|+||++.. .+.+..... ..-|++++|.|+|+ ..+.|+.+|.+++|+.......+..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d-~~Vv~W~Dl-~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~- 489 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISD-KKVVDWNDL-RDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDF- 489 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCc-CeeEeehhh-hhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEee-
Confidence 9999998888999999999999999986 455555554 48899999999996 6889999999999999875432211
Q ss_pred ccCCCCCeeeEEE----cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 358 DAEDGPPELLFIH----GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 358 ~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+... ..|. .|+++.|.|....-++..+.|..|+|+|..+.
T Consensus 490 --------~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 490 --------HIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred --------eEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 01111 1123 79999999876644555588999999999543
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=196.75 Aligned_cols=269 Identities=16% Similarity=0.328 Sum_probs=196.4
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++...+.|.++|..+.|.| +..+|++++.|.++++||+.. ....-...+.+|.+.|.+++|.|.++..|++
T Consensus 92 ~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~--------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT--------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred hhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc--------ceeecceeecccccccchhhhccCCCcceee
Confidence 3456678999999999999 777999999999999999987 2233334578999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCC--------------C---cc----cceeeeecCCcceee---EEeeCCCCcEEEEEeC-CCe
Q 014472 197 GSDDAQICLWDINAAPKN--------------K---SL----EAMQIFKVHEGVVED---VAWHLRHEYLFGSVGD-DQY 251 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~--------------~---~~----~~~~~~~~~~~~v~~---i~~~~~~~~~~~s~~~-dg~ 251 (424)
|+.||.|.|||++-.... . .. +.+.....+...|.+ +.+..|.. .||+++. |+.
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~ 241 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADST 241 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcc
Confidence 999999999999754310 0 00 111222334444444 44445554 5567766 999
Q ss_pred EEEEECCCCCCCC---C--eeEeccc---CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-CcceeecCCCCC--E
Q 014472 252 LLIWDLRTPSVSK---P--VQSVVAH---QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-TALHTFDSHKEE--V 320 (424)
Q Consensus 252 i~i~d~~~~~~~~---~--~~~~~~~---~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~--v 320 (424)
|+|||+|...... + ...+..| .-.+.++..+..|.+++|++. |+.|++|+++... .++..+.++... -
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceee
Confidence 9999999764321 1 1122223 346888889998998777765 9999999998754 345555544322 2
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014472 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 400 (424)
..-..+|++. +|++|+.|....+|.+.... .....+.||.-.|+.++|.|....=++++++|..++
T Consensus 321 vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e-------------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 321 VKSELSPDDC-SLLSGSSDEQAYIWVVSSPE-------------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred eeeecCCCCc-eEeccCCCcceeeeeecCcc-------------CChhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 2334678886 79999999999999998743 334556799999999999886544477889999999
Q ss_pred EEecCCCCCC
Q 014472 401 IWQMAENIYH 410 (424)
Q Consensus 401 iw~~~~~~~~ 410 (424)
||++..++-+
T Consensus 387 iW~l~~~l~e 396 (720)
T KOG0321|consen 387 IWRLSNGLEE 396 (720)
T ss_pred EEeccCchhh
Confidence 9999766543
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.9e-24 Score=179.28 Aligned_cols=243 Identities=17% Similarity=0.303 Sum_probs=185.3
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-...|.++.|+|.+.. |++++.||.+++|+.... . ......|..++.+++|.+.. .+++|+.||.|
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~----------~-l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~v 77 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPAN----------S-LKLKFKHGAPLLDCAFADES--TIVTGGLDGQV 77 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccch----------h-hhhheecCCceeeeeccCCc--eEEEeccCceE
Confidence 3578999999988775 555579999999999872 2 22233489999999999844 49999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
+.+|++++.. ..+..|..+|.+|..++... .+++|+-|++|++||.|.... ...+. ....|.++...
T Consensus 78 r~~Dln~~~~-------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~---~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 78 RRYDLNTGNE-------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV---VGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred EEEEecCCcc-------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc---ccccc-cCceEEEEecc-
Confidence 9999998743 33456999999999997655 556999999999999997432 33332 34589998886
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCC
Q 014472 284 FNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+. .|++|+.+..+.+||+|+...+.+... .-+-.+.++++-|++.. +++++-||.|.+=.+....+.+
T Consensus 145 -g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~-------- 213 (323)
T KOG1036|consen 145 -GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQ-------- 213 (323)
T ss_pred -CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecceEEEEccCCchHHh--------
Confidence 44 588899999999999999776653332 23557899999997765 7788999999886665542222
Q ss_pred CCeeeEEEcCCC---------CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 363 PPELLFIHGGHT---------SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 363 ~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..-+.++.|. .+|++++|+|-.. .|+|||.||.|.+||+...
T Consensus 214 --skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 214 --SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred --hhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch
Confidence 1223333442 3799999999977 7999999999999999865
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=192.63 Aligned_cols=261 Identities=18% Similarity=0.270 Sum_probs=202.7
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
+..+.+--+++|.+++-+|.|. +++.|+..|.+++|.+.+ ...+..+.+|-..|++|.|+.++. +|++
T Consensus 73 ~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelss----------G~LL~v~~aHYQ~ITcL~fs~dgs-~iiT 140 (476)
T KOG0646|consen 73 QVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSS----------GILLNVLSAHYQSITCLKFSDDGS-HIIT 140 (476)
T ss_pred hhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecc----------ccHHHHHHhhccceeEEEEeCCCc-EEEe
Confidence 3345667789999999999885 777777999999999998 455666789999999999999988 8999
Q ss_pred EeCCCcEEEEeCCCC---CCCCcccceeeeecCCcceeeEEeeCCC-CcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 197 GSDDAQICLWDINAA---PKNKSLEAMQIFKVHEGVVEDVAWHLRH-EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
|+.||.|.+|.+..- .......++..+..|.-+|+++...+.+ +..+++++.|.++++||+..+.. +.++ ..
T Consensus 141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L---Llti-~f 216 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL---LLTI-TF 216 (476)
T ss_pred cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee---eEEE-ec
Confidence 999999999987532 2223556788899999999999987653 23456999999999999998764 3332 35
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---------------CcceeecCCCC--CEEEEEEcCCCCcEEEE
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS---------------TALHTFDSHKE--EVFQVGWNPKNETILAS 335 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~~~~sp~~~~~l~s 335 (424)
+..+.+++.+|... .+.+|+.+|.|.+.++.... ..+..+.+|.+ +|+|++.+-+|. +|++
T Consensus 217 p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlS 294 (476)
T KOG0646|consen 217 PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLS 294 (476)
T ss_pred CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEe
Confidence 78899999999776 69999999999999876532 23455678887 999999999995 8999
Q ss_pred EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 336 CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
|+.||.++|||+... +++++.....++|+.+.+.|-.+..+..-.....+-.|++...+.
T Consensus 295 Gd~dg~VcvWdi~S~--------------Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i~ 354 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSK--------------QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMIP 354 (476)
T ss_pred eCCCCCEEEEecchH--------------HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhccCC
Confidence 999999999999875 444444445677888888766553343334444555565554433
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1e-25 Score=198.51 Aligned_cols=220 Identities=17% Similarity=0.349 Sum_probs=173.4
Q ss_pred cEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
...+.+|...|.++++.|.|. .|++|+.|..|++||+...... +.++.+.... ...|++++|++.+..+| +.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E--~h~i~sl~ys~Tg~~iL-vvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCE--THQINSLQYSVTGDQIL-VVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCccc--ccccceeeecCCCCeEE-EEecC
Confidence 456788999999999999998 7999999999999999765332 2233333333 34799999999998766 56667
Q ss_pred CeEEEEECCCCCC---------CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec-----C
Q 014472 250 QYLLIWDLRTPSV---------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-----S 315 (424)
Q Consensus 250 g~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~ 315 (424)
...+|+|-..... ..-+...++|...++|.+|+|.+...|++++.||++++||+.+.......+. +
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 8899998764322 1223345789999999999999998999999999999999988665555554 2
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC--CcceEEeCCCCCcEEEEE
Q 014472 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSWNPCEDWVISSV 393 (424)
Q Consensus 316 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~ 393 (424)
..-+++.++|+|++. ++|+|+.||.|.+|+...... ...+..-.+|.. .|+++.|+++|+ .|+|-
T Consensus 316 ~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSR 382 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISFSYDGN-YLLSR 382 (641)
T ss_pred cccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEeccccc-hhhhc
Confidence 345789999999997 699999999999999865421 123445567766 899999999999 58899
Q ss_pred eCCCcEEEEecCCC
Q 014472 394 AEDNILQIWQMAEN 407 (424)
Q Consensus 394 ~~d~~i~iw~~~~~ 407 (424)
|.|+++++||+...
T Consensus 383 g~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQF 396 (641)
T ss_pred cCCCceeeeecccc
Confidence 99999999999753
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.4e-23 Score=170.65 Aligned_cols=244 Identities=17% Similarity=0.241 Sum_probs=186.5
Q ss_pred cCCceeEEEecCCCCcEEEEEec--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 124 HDGEVNRARYMPQNPFLIATKTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+.-.|..++|...... +..++. |.+|+..++.. .+.++-+.||...|.+|+.+|-+. .+++++.|+
T Consensus 55 kkyG~~~~~Fth~~~~-~i~sStk~d~tIryLsl~d----------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~ 122 (311)
T KOG1446|consen 55 KKYGVDLACFTHHSNT-VIHSSTKEDDTIRYLSLHD----------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDK 122 (311)
T ss_pred ccccccEEEEecCCce-EEEccCCCCCceEEEEeec----------CceEEEcCCCCceEEEEEecCCCC-eEEecccCC
Confidence 3456777777665543 333444 78999999987 577888999999999999999886 799999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc---cCCCeeE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA---HQSEVNC 278 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~v~~ 278 (424)
+|++||++...+.. .+ +...-..++|.|.|- +||++.....|++||+|.-. ..|...+.. .....+.
T Consensus 123 tvrLWDlR~~~cqg------~l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~d-kgPF~tf~i~~~~~~ew~~ 192 (311)
T KOG1446|consen 123 TVRLWDLRVKKCQG------LL--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFD-KGPFTTFSITDNDEAEWTD 192 (311)
T ss_pred eEEeeEecCCCCce------EE--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccC-CCCceeEccCCCCccceee
Confidence 99999998664422 12 223344678999984 77788777799999999864 245555533 3568899
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCE---EEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV---FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
|.|+|+|++ ++.+...+.+++.|.-. +..+.++..+...- .+..|+|+++ ++++|+.||+|.+|+++++.
T Consensus 193 l~FS~dGK~-iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~---- 265 (311)
T KOG1446|consen 193 LEFSPDGKS-ILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGK---- 265 (311)
T ss_pred eEEcCCCCE-EEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCc----
Confidence 999999996 55667788999999987 67778887665433 6889999996 78899999999999998763
Q ss_pred CCccCCCCCeeeEEEcC-CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 356 PEDAEDGPPELLFIHGG-HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.+....+ +..++.++.|+|.-. +++|+ +..+.+|=+....+
T Consensus 266 ----------~v~~~~~~~~~~~~~~~fnP~~~-mf~sa--~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 266 ----------KVAVLRGPNGGPVSCVRFNPRYA-MFVSA--SSNLVFWLPDEDAL 307 (311)
T ss_pred ----------EeeEecCCCCCCccccccCCcee-eeeec--CceEEEEecccccc
Confidence 3444555 688899999999877 56664 56799998775544
No 116
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-24 Score=198.14 Aligned_cols=237 Identities=22% Similarity=0.368 Sum_probs=190.1
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeC
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 208 (424)
+-+.|+..+ .||+|. ...|++|+... + ........+...|+++.|+++|. +|++|..+|.|.|||.
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s--------~--~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASS--------G--SVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDV 246 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCC--------C--ceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEeh
Confidence 346777544 677765 45899999887 2 21222223378999999999998 7999999999999999
Q ss_pred CCCCCCCcccceeeeec-CCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCe
Q 014472 209 NAAPKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 287 (424)
..... +..+.+ |...|-+++|. ..++.+|+.++.|..+|+|..+... ..+.+|...|..++|++++.
T Consensus 247 ~~~k~------~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~--~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 247 KEQKK------TRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV--STLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred hhccc------cccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh--hhhhcccceeeeeEECCCCC-
Confidence 77643 344455 89999999998 3467899999999999999877522 24778999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEe--CCCeEEEeeCCCCCcccCCCccCCCCCe
Q 014472 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRIDEEQTPEDAEDGPPE 365 (424)
Q Consensus 288 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 365 (424)
.||+|+.|+.+.|||... ..++..+..|.++|..++|+|..+.+||+|+ .|++|++||..++..
T Consensus 315 ~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~------------- 380 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR------------- 380 (484)
T ss_pred eeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-------------
Confidence 699999999999999976 6888999999999999999998888999875 499999999998643
Q ss_pred eeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCC
Q 014472 366 LLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAEN 407 (424)
Q Consensus 366 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~ 407 (424)
+.... -.+.|.++.|++..+-++.+.| .++.|.||++.+-
T Consensus 381 -i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 381 -IDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred -ecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 22222 2457999999999865565554 5778999999773
No 117
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-24 Score=175.32 Aligned_cols=209 Identities=19% Similarity=0.241 Sum_probs=178.8
Q ss_pred EEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeE
Q 014472 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i 252 (424)
.+.+|..+++.+.++.+|. +|++|+.|.++.||--..+ ..+..+.+|++.|+++..+.+...+ ++|+.|.++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nG------erlGty~GHtGavW~~Did~~s~~l-iTGSAD~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNG------ERLGTYDGHTGAVWCCDIDWDSKHL-ITGSADQTA 76 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCC------ceeeeecCCCceEEEEEecCCccee-eecccccee
Confidence 4788999999999999998 8999999999999987666 3577889999999999999888765 599999999
Q ss_pred EEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe----CCCcEEEEECCCC------CCcceeecCCCCCEEE
Q 014472 253 LIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS----TDKTVKLFDLRKI------STALHTFDSHKEEVFQ 322 (424)
Q Consensus 253 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~----~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~ 322 (424)
++||+.++++ +..++ ...+|..+.|++.|..++++.. ..+.|.++|++.. ..|+..+..+.+.++.
T Consensus 77 kLWDv~tGk~---la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 77 KLWDVETGKQ---LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEEcCCCcE---EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999999886 55544 4789999999998875444322 3468999999842 4678888889999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
+.|.|-++ +|++|..||.|.+||++++. +++.....|...|++++++++.. ++++++.|.+.++|
T Consensus 153 a~Wg~l~~-~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 153 ALWGPLGE-TIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV 217 (327)
T ss_pred eeecccCC-EEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence 99999997 78999999999999999864 55666678888999999999999 69999999999999
Q ss_pred ecCCCC
Q 014472 403 QMAENI 408 (424)
Q Consensus 403 ~~~~~~ 408 (424)
|+.+-.
T Consensus 218 D~~tl~ 223 (327)
T KOG0643|consen 218 DVRTLE 223 (327)
T ss_pred ecccee
Confidence 998754
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2e-26 Score=210.63 Aligned_cols=237 Identities=24% Similarity=0.374 Sum_probs=203.9
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
...|...|.++..-..+ ..+++|+.+-.+-+|.+.. ..++..+.+|..+|-+|.|++... +|++|+.+
T Consensus 24 ~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k----------p~~i~S~~~hespIeSl~f~~~E~-Llaagsas 91 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK----------PNAITSLTGHESPIESLTFDTSER-LLAAGSAS 91 (825)
T ss_pred hhhhhhhhceeeeeccc-eeeccCCCceeeccccccC----------CchhheeeccCCcceeeecCcchh-hhcccccC
Confidence 34688899999985544 4899999999999999987 455667999999999999999776 89999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
|+|++||+.... .++.+.+|...+..+.|+|.+. ++|+|+.|+.+++||++...+ .+.+.+|...+.++.
T Consensus 92 gtiK~wDleeAk------~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc---~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 92 GTIKVWDLEEAK------IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC---SHTYKSHTRVVDVLR 161 (825)
T ss_pred Cceeeeehhhhh------hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCc---eeeecCCcceeEEEe
Confidence 999999998763 4556778999999999999997 458999999999999997554 778888999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 360 (424)
|+|+|. +++.|+.|.+++|||++. ++.+..|..|.+.+.++.|+|.. .++++|+.|+++++||+++.
T Consensus 162 lsP~Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletf---------- 228 (825)
T KOG0267|consen 162 LSPDGR-WVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETF---------- 228 (825)
T ss_pred ecCCCc-eeeccCCcceeeeecccc-cccccccccccccccccccCchh-hhhccCCCCceeeeecccee----------
Confidence 999998 599999999999999998 88999999999999999999988 58999999999999999864
Q ss_pred CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC
Q 014472 361 DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN 397 (424)
Q Consensus 361 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 397 (424)
+++-........|.+.+|+|++. .+.+|....
T Consensus 229 ----e~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~s 260 (825)
T KOG0267|consen 229 ----EVISSGKPETDGVRSLAFNPDGK-IVLSGEQIS 260 (825)
T ss_pred ----EEeeccCCccCCceeeeecCCce-eeecCchhh
Confidence 44555555567799999999998 577765443
No 119
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=3.6e-24 Score=176.07 Aligned_cols=273 Identities=18% Similarity=0.309 Sum_probs=207.8
Q ss_pred cEEEEEEeccCCceeEEEec--CCCCcEEEEEec----CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecC
Q 014472 115 KVQIIQQINHDGEVNRARYM--PQNPFLIATKTV----SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK 188 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~--p~~~~~latg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 188 (424)
+.+.+....-+-.+.++.|+ |+.+..||.|+. .+.|.|-.+.....+ ...... ..|.-+++.+.|.|
T Consensus 34 r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e------~~~~a~-fd~~YP~tK~~wiP 106 (364)
T KOG0290|consen 34 RRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE------LVEDAN-FDHPYPVTKLMWIP 106 (364)
T ss_pred ccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc------eeccCC-CCCCCCccceEecC
Confidence 33444556667788899998 455678999873 567888777642211 111222 46889999999999
Q ss_pred CCC----ceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCC
Q 014472 189 FKE----GHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 189 ~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
+.. .+||+++ ..+++|.+.........+. ...-..+..++++..|+.-.++++.+.+-|.+..|||+.++.
T Consensus 107 d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 107 DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence 863 3466554 4899999975322111111 111234668999999999999999999999999999999874
Q ss_pred CCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCC
Q 014472 262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 262 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
.......+-+|...|..|+|...+..+||+.+.||.+|+||+|......-.+.. ...+...++|+++..+++|+-..|
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 322345567899999999999988889999999999999999986554444443 246889999999998889887665
Q ss_pred C-eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 340 R-RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 340 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
. .|.|.|++.. ...+..+++|.+.|++++|.|.....|+|+|+|..+.|||+.....
T Consensus 265 S~~V~iLDiR~P-------------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 265 SNKVVILDIRVP-------------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CceEEEEEecCC-------------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 4 5999999973 4678888999999999999999888999999999999999987655
No 120
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-26 Score=218.70 Aligned_cols=263 Identities=26% Similarity=0.395 Sum_probs=203.0
Q ss_pred eEEEecCCCCcEEEEEec----------CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCc---eEE
Q 014472 129 NRARYMPQNPFLIATKTV----------SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG---HLL 195 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~ 195 (424)
..++|+|.+..++|+|.. +.++-||.+....... ..++...+. -....+.|+|.+.+.. +|+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~----dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS----DLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc----ccccccccc-ccccceeeeecccCCCccceee
Confidence 357899988767777643 4455666655422111 112222222 3346789999988775 589
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
.|..||.|.+||...-........+.....|.+.|..+.|++...+++|+|+.||.|.|||+...+...... -....+.
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~e 163 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSE 163 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCccc
Confidence 999999999999976433455566777888999999999999999999999999999999999865421111 1234678
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCC--CEEEEEEcCCCCcEEEEEeCCC---eEEEeeCCCC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE--EVFQVGWNPKNETILASCCLGR---RLMVWDLSRI 350 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~ 350 (424)
|.+++|+..-.++||+++.+|.+.|||+|. .+++..+..+.. .+..++|+|+....|++++.|. .|.+||+|..
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 999999999999999999999999999998 577777766554 5789999999877777777654 5999999874
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
. ..+..+.+|...|.++.|++.+..+++|++.|+.|.+|+.+++.+-.
T Consensus 243 s-------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 243 S-------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred C-------------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 3 45666689999999999999996689999999999999999975543
No 121
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.93 E-value=3e-23 Score=194.03 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=213.4
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC-ceE
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l 194 (424)
......+.-+..|.++.|+|..++++|.|+.+|.|.+||+......+. .........|..+++.+.|..+.. .-|
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~~vvW~~~~~~~~f 308 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVTAVVWLQNEHNTEF 308 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeEEEEEeccCCCCce
Confidence 333445567889999999999999999999999999999998543321 111223446889999999976533 238
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeee------cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-----C
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-----S 263 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-----~ 263 (424)
++++.||.|+.|+++.-............. .....+++++|.+..++.|+.|++.|.|..-+-..... .
T Consensus 309 ~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~ 388 (555)
T KOG1587|consen 309 FSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY 388 (555)
T ss_pred EEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence 999999999999887543321111111111 12347899999999999999999999988744332221 1
Q ss_pred CCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEE
Q 014472 264 KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLM 343 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~ 343 (424)
+....+..|.++|+++.++|.+..+|++++ |.+++||.......|+..+..+...|++++|||..+.+|+++..||.|.
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 224456678999999999999987777777 9999999988447888888888888999999999999999999999999
Q ss_pred EeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 014472 344 VWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDD 414 (424)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 414 (424)
|||+..... .++....-+....+.+.|++.|+ +|++|...|.+++|++..+...+..+
T Consensus 468 iWDLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~~l~~~~~~ 525 (555)
T KOG1587|consen 468 IWDLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSESLAVPSPN 525 (555)
T ss_pred hhhhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCchhhccCcc
Confidence 999986532 22333333355677889999999 89999999999999999887766554
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.3e-25 Score=181.70 Aligned_cols=214 Identities=21% Similarity=0.345 Sum_probs=166.4
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEE
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
..+.....|.++|+++.|+|... +|++|+.|++|++||+.+. ..+..........+|.+|.|+|.|. +|+
T Consensus 163 PvIRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~--------saKrA~K~~qd~~~vrsiSfHPsGe-fll 232 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKT--------SAKRAFKVFQDTEPVRSISFHPSGE-FLL 232 (430)
T ss_pred ceEeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccH--------HHHHHHHHhhccceeeeEeecCCCc-eEE
Confidence 34555678999999999999775 9999999999999999872 2222222333556899999999988 799
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC-C
Q 014472 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-S 274 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~ 274 (424)
.|....++++||+++.++-.. ...-..|++.|+++.+++.++ +.++++.||.|++||--++++...+. .+|. .
T Consensus 233 vgTdHp~~rlYdv~T~Qcfvs---anPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gs 306 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVS---ANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGS 306 (430)
T ss_pred EecCCCceeEEeccceeEeee---cCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH--hhcCCc
Confidence 999999999999988754221 123456999999999999986 77899999999999988776633332 3554 5
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-----------------------------------------
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF----------------------------------------- 313 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------------------------------- 313 (424)
.|.+..|..++++ +++.+.|..+++|.+.+ ++++..+
T Consensus 307 evcSa~Ftkn~ky-iLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 307 EVCSAVFTKNGKY-ILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred eeeeEEEccCCeE-EeecCCcceeeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 7899999999985 77888999999999876 3332222
Q ss_pred --------cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 314 --------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 314 --------~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
.+|++.+..+.-||.++ .+++|+.|-.+++|--+
T Consensus 385 adr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 ADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 24778888888888886 58888888888888654
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9e-23 Score=162.12 Aligned_cols=222 Identities=24% Similarity=0.397 Sum_probs=172.2
Q ss_pred cEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC-------------------------------
Q 014472 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP------------------------------- 163 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~------------------------------- 163 (424)
.+...+...|.+.|.|.+|+|.|. +||+|+.|.+|++..++.......
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 455556667899999999999997 999999999999987654211110
Q ss_pred -----------CCCCCCCcEEEecCCCCeeeE-EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec---CCc
Q 014472 164 -----------LDGACSPDLRLRGHSTEGYGL-SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV---HEG 228 (424)
Q Consensus 164 -----------~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~ 228 (424)
.-+..++...+.+|.+-|.++ .|+ +- ++++|+.|.+|++||++-......+.. .+.. .++
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~--~~~~~gless 232 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDN--DFHDGGLESS 232 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccC--cccCCCcccc
Confidence 012234456677788888776 354 44 799999999999999987654433221 1111 236
Q ss_pred ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--
Q 014472 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-- 306 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-- 306 (424)
.|.+++..|.|+ ++++|..|....+||+|.+.. ++.+..|...|.|+.|+|.. +++++++.|..|++-|+...
T Consensus 233 avaav~vdpsgr-ll~sg~~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred eeEEEEECCCcc-eeeeccCCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh
Confidence 799999999996 788999999999999999764 88899999999999999955 57999999999999998741
Q ss_pred -CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 307 -STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 307 -~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
.-++.....|+..+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 245666678999999999999884 57789999999999764
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-23 Score=168.98 Aligned_cols=219 Identities=19% Similarity=0.305 Sum_probs=175.1
Q ss_pred EEEEEeccCCceeEEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCc-e
Q 014472 117 QIIQQINHDGEVNRARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG-H 193 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p--~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~ 193 (424)
.+....+|.++|..++|.. .|. +||+++.||.|.||.-.. +.+........|...|++++|.|.+-+ +
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~--------g~w~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN--------GRWTKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred eeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC--------CchhhhhhhhhhcccceeecccccccceE
Confidence 3445568999999999964 454 999999999999999887 556667778889999999999998655 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC---C----------CcEEEEEeCCCeEEEEECCCC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---H----------EYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~----------~~~~~s~~~dg~i~i~d~~~~ 260 (424)
|++++.||.|.|.+.+... ..........|.-.|++++|.|. | .+.|++|+.|..|+||+....
T Consensus 119 LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSG---GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred EEEeeCCCcEEEEEEcCCC---CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 7889999999999997652 11233446679999999999986 3 134789999999999999886
Q ss_pred CCCCCeeEecccCCCeeEEEecCCC---CeEEEEEeCCCcEEEEECCCCCCc--ceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 261 SVSKPVQSVVAHQSEVNCLAFNPFN---EWILATGSTDKTVKLFDLRKISTA--LHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
+ ...-..+.+|.+-|+.++|.|.. ...||+++.||++.||-.+....+ ...+......+.++.||+.|. +|+.
T Consensus 196 ~-w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaV 273 (299)
T KOG1332|consen 196 S-WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAV 273 (299)
T ss_pred c-hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEE
Confidence 4 33344578999999999999964 357999999999999988753222 222333457899999999995 8999
Q ss_pred EeCCCeEEEeeCCC
Q 014472 336 CCLGRRLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg~i~iwd~~~ 349 (424)
++.|+.+.+|.-..
T Consensus 274 s~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 274 SGGDNKVTLWKENV 287 (299)
T ss_pred ecCCcEEEEEEeCC
Confidence 99999999998655
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=7e-25 Score=176.54 Aligned_cols=206 Identities=19% Similarity=0.352 Sum_probs=171.4
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
+..+.|..-|.+++|+.+.. .|+||+.+..++|||++.. ..+...+.+|.+.|..+.|..... .+++++
T Consensus 94 lhsf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p---------~App~E~~ghtg~Ir~v~wc~eD~-~iLSSa 162 (334)
T KOG0278|consen 94 LHSFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRP---------KAPPKEISGHTGGIRTVLWCHEDK-CILSSA 162 (334)
T ss_pred hhhhhhhheeeeEEecccch-hhhccchHHHhhhhhccCC---------CCCchhhcCCCCcceeEEEeccCc-eEEeec
Confidence 45678999999999999775 7999999999999999873 234457889999999999998776 588889
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|++|++||.+++.....+ . ...+|+++..+++|. ++ +....+.|.+||..+-.. +..+. -+..|.+
T Consensus 163 dd~tVRLWD~rTgt~v~sL------~-~~s~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~~---lKs~k-~P~nV~S 229 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSL------E-FNSPVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFGL---LKSYK-MPCNVES 229 (334)
T ss_pred cCCceEEEEeccCcEEEEE------e-cCCCCcceeeccCCC-EE-EEecCceeEEeccccccc---eeecc-Ccccccc
Confidence 9999999999998543333 2 467899999999997 33 666788999999998554 43332 3557899
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+.+|+.. ++++|+.|..++.||..+ +..+..+ ++|-++|.|+.|+|+|. +.++|+.||+|+||.+...+
T Consensus 230 ASL~P~k~-~fVaGged~~~~kfDy~T-geEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 230 ASLHPKKE-FFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccCCCc-eEEecCcceEEEEEeccC-CceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence 99999886 799999999999999998 5666665 89999999999999997 79999999999999987653
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4e-25 Score=186.85 Aligned_cols=214 Identities=25% Similarity=0.431 Sum_probs=175.6
Q ss_pred cEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg 250 (424)
+..+.+|...|.+++=+|.....+++|+.||.|++||+.+. .++..+..|.+.|..|++.. .. ++++++|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------~~~~~f~AH~G~V~Gi~v~~--~~-~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------ECIRTFKAHEGLVRGICVTQ--TS-FFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------hhhheeecccCceeeEEecc--cc-eEEecCCc
Confidence 34578999999999999977557999999999999999766 34566788999999999986 23 45899999
Q ss_pred eEEEEECCCCC-----------------------------------CCCCeeEecccCCCeeEEEecCCCCeEEEEEeCC
Q 014472 251 YLLIWDLRTPS-----------------------------------VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 251 ~i~i~d~~~~~-----------------------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d 295 (424)
+|+.|.+..+. ...|+..+.--...|.++.|+|....+|++++.|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 99999743210 0123444444456688999999888899999999
Q ss_pred CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC
Q 014472 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
+.|.+||+|. ..|++.+.. ...-+.++|+|.. ..|++++.|..+..||++... ..+.++.+|.+
T Consensus 210 rsIvLyD~R~-~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs 273 (433)
T KOG0268|consen 210 RSIVLYDLRQ-ASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS 273 (433)
T ss_pred CceEEEeccc-CCccceeee-eccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence 9999999998 677766654 5667889999965 578999999999999999865 66788899999
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
.|.+++|+|.|+ =+++||.|.+|+||.+..+.-+
T Consensus 274 AV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 274 AVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred eEEEeccCCCcc-hhccccccceEEEeecCCCcch
Confidence 999999999999 5999999999999999887544
No 127
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=194.25 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=203.7
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+...|.+-|+.+...-++. -|++++.|-+|++|+.... ......++..|..-|.||+.-.....++|+|+-
T Consensus 68 sme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~--------~~~c~stir~H~DYVkcla~~ak~~~lvaSgGL 138 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKD--------NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGL 138 (735)
T ss_pred hhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccC--------cchhHhhhhcccchheeeeecccCceeEEecCC
Confidence 3446899999999998886 6888999999999999872 234566788999999999994334448999999
Q ss_pred CCcEEEEeCCCCCC-----CCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 200 DAQICLWDINAAPK-----NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 200 dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
|+.|.+||++++.. ......-....++..+|.+++.++.+ .+|++|+..+.+++||.++.+. +..+.+|..
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---imkLrGHTd 214 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---IMKLRGHTD 214 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc---eeeeecccc
Confidence 99999999997733 11111111122788999999999988 5888999999999999999664 777789999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
.|.++..+++|.. +++++.||+|++||++. .+++.++..|+..|+++..+|+-. .+++|+.||.|..=|+++...
T Consensus 215 NVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~-- 289 (735)
T KOG0308|consen 215 NVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAK-- 289 (735)
T ss_pred ceEEEEEcCCCCe-EeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchh--
Confidence 9999999999984 88999999999999998 889999999999999999999885 699999999999999987421
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..+++. ...+|..+..+..... +-++..|+.|+-|...-.
T Consensus 290 ---------~tlick---~daPv~~l~~~~~~~~-~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 290 ---------STLICK---EDAPVLKLHLHEHDNS-VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ---------heEeec---CCCchhhhhhccccCC-ceeeeccccceecCCccc
Confidence 122222 2345666666654442 244567888888877544
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=182.44 Aligned_cols=247 Identities=16% Similarity=0.239 Sum_probs=191.7
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
+++++-.....|.+|.+.+. .......--.++|.+|+-+|.|. +|+.|...|.|++|.+.++.
T Consensus 52 yllsaq~~rp~l~vw~i~k~----------~~~~q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~------ 114 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKK----------DQVVQYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGI------ 114 (476)
T ss_pred heeeecccCccccccccCch----------hhhhhhcccccceeeeecCCCce-EEEeecccCcEEEEEecccc------
Confidence 44555555668999998872 11222233567899999999887 67777799999999999984
Q ss_pred ceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC------CCCCCCeeEecccCCCeeEEEecCCC-CeEEEE
Q 014472 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT------PSVSKPVQSVVAHQSEVNCLAFNPFN-EWILAT 291 (424)
Q Consensus 219 ~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~~ 291 (424)
.+..+..|-..|+++.|+.++.++ ++|+.||.|.+|++-. ....+++..+..|.-+|+.+...+.+ ...++|
T Consensus 115 LL~v~~aHYQ~ITcL~fs~dgs~i-iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 115 LLNVLSAHYQSITCLKFSDDGSHI-ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HHHHHHhhccceeEEEEeCCCcEE-EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE
Confidence 455567899999999999999865 5999999999998742 22357889999999999999887642 225899
Q ss_pred EeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC--CCccCCCCCeeeEE
Q 014472 292 GSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT--PEDAEDGPPELLFI 369 (424)
Q Consensus 292 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~ 369 (424)
++.|.++++||+.. +..+.++.. ..++.+++.+|.+. .++.|+.+|.|.+.++........ ...........+..
T Consensus 194 aS~D~t~k~wdlS~-g~LLlti~f-p~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSL-GVLLLTITF-PSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred ecCCceEEEEEecc-ceeeEEEec-CCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 99999999999998 677766664 67899999999885 788999999999998876542111 00000111244566
Q ss_pred EcCCCC--CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 370 HGGHTS--KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 370 ~~~h~~--~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+.||.+ .|++++.+-||. +|++|+.||.|+|||+.+.
T Consensus 271 ~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred eccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence 788988 999999999999 8999999999999999765
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=174.18 Aligned_cols=247 Identities=19% Similarity=0.342 Sum_probs=185.9
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..++.|+. ..|+.|++.|. +||+|+.+|.|.|||+.+ ......+.+|..+|.+++|+++|. .|+++|
T Consensus 18 ~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T----------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS 84 (405)
T KOG1273|consen 18 THTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDT----------FRIARMLSAHVRPITSLCWSRDGR-KLLTSS 84 (405)
T ss_pred ceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccc----------cchhhhhhccccceeEEEecCCCC-Eeeeec
Confidence 44556666 88999999986 899999999999999998 456677889999999999999998 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCccee-----------------------------------------------
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVE----------------------------------------------- 231 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~----------------------------------------------- 231 (424)
.|..|.+||+..+.....+. ..++|+
T Consensus 85 ~D~si~lwDl~~gs~l~rir-------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIR-------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred CCceeEEEeccCCCceeEEE-------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 99999999999886432221 111111
Q ss_pred eEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC-CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC---
Q 014472 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--- 307 (424)
Q Consensus 232 ~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--- 307 (424)
+..|.+.|+++ .+|...|.+.++|..+.++ +..++... ..|..|.++..|+ .|+.-+.|+.|+.|+++..-
T Consensus 158 ~~~fdr~g~yI-itGtsKGkllv~~a~t~e~---vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 158 HGVFDRRGKYI-ITGTSKGKLLVYDAETLEC---VASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred cccccCCCCEE-EEecCcceEEEEecchhee---eeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccC
Confidence 12345556544 5889999999999988654 55554444 6788999999888 58889999999999987321
Q ss_pred -----Ccceeec--CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC-CCcce
Q 014472 308 -----TALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISD 379 (424)
Q Consensus 308 -----~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~ 379 (424)
.+.+.++ ..+.+=.+++|+.+|.+++|+....-.+.||....+ .++..+.|.. ....+
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--------------sLVKILhG~kgE~l~D 298 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--------------SLVKILHGTKGEELLD 298 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--------------ceeeeecCCchhheee
Confidence 1112221 123345678999999866665556677999998876 5666776766 56789
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 380 FSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+.|+|-.+ ++++. ..|.++||....
T Consensus 299 V~whp~rp-~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 299 VNWHPVRP-IIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccccccee-eeeec-cCCceEEEEeec
Confidence 99999998 67776 688999998764
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.5e-23 Score=191.53 Aligned_cols=245 Identities=20% Similarity=0.340 Sum_probs=194.5
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
+..|...-+.|+|.|+|. +|++++.||.|++|+.......+. .+..+...|.+++-.. ++|++|+.+
T Consensus 9 Ryaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~---------ti~~~g~~v~~ia~~s---~~f~~~s~~ 75 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE---------TIDISGELVSSIACYS---NHFLTGSEQ 75 (933)
T ss_pred hhhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc---------hhhccCceeEEEeecc---cceEEeecc
Confidence 457888899999999998 889999999999999887432221 1222677787777643 379999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
++|.+|.+..+.... .+....-++++++++.+|. .+|.|++|-.|++.++..... ...+.+|..+|.++.
T Consensus 76 ~tv~~y~fps~~~~~------iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~---~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDT------ILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQ---EKVLRGHDAPVLQLS 145 (933)
T ss_pred ceEEEeeCCCCCccc------eeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccch---heeecccCCceeeee
Confidence 999999998775432 2333567899999999987 567999999999999988664 667789999999999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC-------C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
|+|.+. +||+.+.||.|++||+.. +....++.+ . ...+..++|+|++.. |+..+.|+.|++|+...+.
T Consensus 146 ~~p~~~-fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we- 221 (933)
T KOG1274|consen 146 YDPKGN-FLAVSSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWE- 221 (933)
T ss_pred EcCCCC-EEEEEecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCce-
Confidence 999998 799999999999999987 544444432 1 456788999999865 6677778899999998864
Q ss_pred ccCCCccCCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 353 EQTPEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
..+.+. .+...+..+.|+|+|.| ||+++.||.|.|||+.+
T Consensus 222 -------------~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 222 -------------LQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDT 263 (933)
T ss_pred -------------eheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEeccc
Confidence 333332 23444899999999995 99999999999999997
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4e-24 Score=187.96 Aligned_cols=254 Identities=21% Similarity=0.320 Sum_probs=200.9
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec--CCCCeeeEEecCCCCce
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG--HSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~ 193 (424)
.+-+..+.|.+-|.++..+...+ .+.||+ .|.|+|||+....+ ..++..+.. ...-|.++...|++. .
T Consensus 410 arq~~tL~HGEvVcAvtIS~~tr-hVyTgG-kgcVKVWdis~pg~-------k~PvsqLdcl~rdnyiRSckL~pdgr-t 479 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISQPGN-------KSPVSQLDCLNRDNYIRSCKLLPDGR-T 479 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcc-eeEecC-CCeEEEeeccCCCC-------CCccccccccCcccceeeeEecCCCc-e
Confidence 34456788999999999998776 788877 58899999987432 233333332 345689999999998 5
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
|++|+.-.++.|||+......- ...+....-.+..++.+|+.+..| ++..||.|.|||+++... +..+++|.
T Consensus 480 LivGGeastlsiWDLAapTpri----kaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhnq~~---VrqfqGht 551 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPTPRI----KAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHNQTL---VRQFQGHT 551 (705)
T ss_pred EEeccccceeeeeeccCCCcch----hhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEccccee---eecccCCC
Confidence 9999999999999998764321 111222334677889999987666 778899999999998664 78899999
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcc
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE 353 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~ 353 (424)
..+.||..+++|.+ |.||+-|.+|+.||+|. +..+.... ..+.|.++..+|++. .|+.|...+.+.|......
T Consensus 552 DGascIdis~dGtk-lWTGGlDntvRcWDlre-grqlqqhd-F~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--- 624 (705)
T KOG0639|consen 552 DGASCIDISKDGTK-LWTGGLDNTVRCWDLRE-GRQLQQHD-FSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--- 624 (705)
T ss_pred CCceeEEecCCCce-eecCCCccceeehhhhh-hhhhhhhh-hhhhheecccCCCcc-ceeeecccCcEEEEecCCc---
Confidence 99999999999985 99999999999999998 44444443 267899999999997 6899999998888777652
Q ss_pred cCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 354 QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
-.+.+.-|.+.|.++.|.+.|+| +++.+.|+.+..|+..-+
T Consensus 625 ------------~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 625 ------------EKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ------------cceeecccccEEEEEEecccCce-eeecCchhhhhhccCccc
Confidence 13344568889999999999995 888899999999998766
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3e-22 Score=180.95 Aligned_cols=251 Identities=11% Similarity=0.089 Sum_probs=172.6
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+.+...+.+++|+|++..++++++.++.|++||... ......+..+. .+..++|+|++..++++++.+
T Consensus 26 ~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~----------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~ 94 (300)
T TIGR03866 26 TFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT----------GEVIGTLPSGP-DPELFALHPNGKILYIANEDD 94 (300)
T ss_pred EEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC----------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCC
Confidence 3444455788999999986667888899999999876 22233344333 356789999887444556678
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC-CeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
+.|++||+.+.. .+..+. +...+.+++|+|++..+ +++..+ ..+.+||.++... ..... ....+.++
T Consensus 95 ~~l~~~d~~~~~------~~~~~~-~~~~~~~~~~~~dg~~l-~~~~~~~~~~~~~d~~~~~~---~~~~~-~~~~~~~~ 162 (300)
T TIGR03866 95 NLVTVIDIETRK------VLAEIP-VGVEPEGMAVSPDGKIV-VNTSETTNMAHFIDTKTYEI---VDNVL-VDQRPRFA 162 (300)
T ss_pred CeEEEEECCCCe------EEeEee-CCCCcceEEECCCCCEE-EEEecCCCeEEEEeCCCCeE---EEEEE-cCCCccEE
Confidence 999999997642 222222 23456889999999755 455555 4577889877543 22222 23456789
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCC-------CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+|+|++..+++++..++.|++||+++ ++.+..+..+. .....++|+|+++.++++.+.++.+.+||+.++.
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~- 240 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE- 240 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-
Confidence 99999986656666799999999997 45544443221 1235688999998656666667789999997642
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
..... .+...+.+++|+|++++++++.+.+|.|++||+.++...
T Consensus 241 -------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 241 -------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred -------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 22222 123468999999999954444567999999999988653
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=192.60 Aligned_cols=263 Identities=17% Similarity=0.281 Sum_probs=206.8
Q ss_pred EEEEeccC-CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCCeeeEEecCCCCceEE
Q 014472 118 IIQQINHD-GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 118 ~~~~~~h~-~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
++..+.|. +.|+.++|.-||..++|+|+..|.+.+||++. .+... ....|.+.|..+.|.|..+ .++
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~----------kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ 304 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK----------KKLINVTRNAHYGSVTGATFLPGEP-VLV 304 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC----------CeeeeeeeccccCCcccceecCCCc-eEe
Confidence 45567886 99999999999999999999999999999997 22222 3347888899999998665 899
Q ss_pred EEeCCCcEEEEeCCCCCCCCcc----------------------------------------------------------
Q 014472 196 SGSDDAQICLWDINAAPKNKSL---------------------------------------------------------- 217 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~~---------------------------------------------------------- 217 (424)
+++.|..+++|=.+++.....+
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 9999998888855522110000
Q ss_pred -------------------------------------ccee------------e-----eecCCcceeeEEeeCCCCcEE
Q 014472 218 -------------------------------------EAMQ------------I-----FKVHEGVVEDVAWHLRHEYLF 243 (424)
Q Consensus 218 -------------------------------------~~~~------------~-----~~~~~~~v~~i~~~~~~~~~~ 243 (424)
.... . ++.....+++++.++.|+..|
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~ 464 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVF 464 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEE
Confidence 0000 0 011124677888888887554
Q ss_pred EEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEE
Q 014472 244 GSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323 (424)
Q Consensus 244 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 323 (424)
.|+..|.|-+|++.++-.......-..|..+|+.++.+..++ ++++++.+|.+++||..+ +.++..+.. ...+..+
T Consensus 465 -IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~-k~l~~~l~l-~~~~~~i 540 (910)
T KOG1539|consen 465 -IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKK-KVLKKSLRL-GSSITGI 540 (910)
T ss_pred -EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCC-cceeeeecc-CCCccee
Confidence 888999999999998765444433468999999999998887 799999999999999997 566666664 6678888
Q ss_pred EEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
..+.... +++.+..|-.|+++|+.+. ..++.+.||.+.|++++|||+|+| |++++.|++|++||
T Consensus 541 v~hr~s~-l~a~~~ddf~I~vvD~~t~--------------kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wD 604 (910)
T KOG1539|consen 541 VYHRVSD-LLAIALDDFSIRVVDVVTR--------------KVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWD 604 (910)
T ss_pred eeeehhh-hhhhhcCceeEEEEEchhh--------------hhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEe
Confidence 8888775 7899999999999999874 567788999999999999999996 88899999999999
Q ss_pred cCCCCCCC
Q 014472 404 MAENIYHD 411 (424)
Q Consensus 404 ~~~~~~~~ 411 (424)
+.++.+-+
T Consensus 605 lpt~~lID 612 (910)
T KOG1539|consen 605 LPTGTLID 612 (910)
T ss_pred ccCcceee
Confidence 99986654
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.7e-25 Score=203.21 Aligned_cols=225 Identities=23% Similarity=0.456 Sum_probs=191.6
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
+++.....-.+++|+... +..|...+.++..-..+. .+++|+.|..+.+|.+... .+
T Consensus 6 ~~m~~~~~t~Lr~~~~~~----------------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp------~~ 62 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE----------------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKP------NA 62 (825)
T ss_pred ccceeeeeeccccccchh----------------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCC------ch
Confidence 344444555677887665 446888888888755454 7999999999999998655 23
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
+..+.+|..+|.++.|++... ++++|+.+|+|++||+..... +.++.+|...+.++.|+|.+. ++|.|+.|+.++
T Consensus 63 i~S~~~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~---vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~ 137 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI---VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLK 137 (825)
T ss_pred hheeeccCCcceeeecCcchh-hhcccccCCceeeeehhhhhh---hhhhhccccCcceeeeccceE-Eeccccccccce
Confidence 445789999999999999875 788999999999999998654 778889999999999999998 479999999999
Q ss_pred EEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcce
Q 014472 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
+||+|. ..+.+.+.+|...|..+.|+|+|. +++.++.|..++|||+..+ .++..+.+|...+..
T Consensus 138 iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag--------------k~~~ef~~~e~~v~s 201 (825)
T KOG0267|consen 138 IWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG--------------KLSKEFKSHEGKVQS 201 (825)
T ss_pred ehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc--------------ccccccccccccccc
Confidence 999997 678999999999999999999996 7999999999999999876 567778899999999
Q ss_pred EEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 380 FSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+.|+|..- ++++||.|+++++||+.+-.+
T Consensus 202 le~hp~e~-Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 202 LEFHPLEV-LLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred cccCchhh-hhccCCCCceeeeeccceeEE
Confidence 99999887 899999999999999995433
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-22 Score=168.62 Aligned_cols=235 Identities=17% Similarity=0.208 Sum_probs=178.3
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+...+.|..++.+++|.+.. -+++|+.||.|+.+|+.. .....+..|...|.+|.+++-.. .+++|
T Consensus 47 l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~-----------~~~~~igth~~~i~ci~~~~~~~-~vIsg 112 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNT-----------GNEDQIGTHDEGIRCIEYSYEVG-CVISG 112 (323)
T ss_pred hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecC-----------CcceeeccCCCceEEEEeeccCC-eEEEc
Confidence 45567899999999999855 589999999999999997 33456778999999999998554 79999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
+.|++|++||.+....... +. ....|.++... +. .|++|+.+..+.+||+|+...... ..-...+-.++
T Consensus 113 sWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~--g~-~LvVg~~~r~v~iyDLRn~~~~~q-~reS~lkyqtR 181 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS--GN-RLVVGTSDRKVLIYDLRNLDEPFQ-RRESSLKYQTR 181 (323)
T ss_pred ccCccEEEEeccccccccc------cc-cCceEEEEecc--CC-EEEEeecCceEEEEEcccccchhh-hccccceeEEE
Confidence 9999999999986422211 12 34478888765 33 455889999999999998664211 11123355789
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCC---CCcceeecCCC---------CCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKI---STALHTFDSHK---------EEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~---------~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
||++.|.+.- +++++-||.|.+=.+... ......|+.|. -+|++++|+|-.+ .||||+.||.|.+|
T Consensus 182 ~v~~~pn~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 182 CVALVPNGEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIW 259 (323)
T ss_pred EEEEecCCCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEc
Confidence 9999997774 788999999888666542 12344555554 3799999999875 69999999999999
Q ss_pred eCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014472 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
|+.+.+ .+..+......|..++|+.+|. +||.++
T Consensus 260 d~~~rK--------------rl~q~~~~~~SI~slsfs~dG~-~LAia~ 293 (323)
T KOG1036|consen 260 DLFNRK--------------RLKQLAKYETSISSLSFSMDGS-LLAIAS 293 (323)
T ss_pred cCcchh--------------hhhhccCCCCceEEEEeccCCC-eEEEEe
Confidence 998753 2444444556799999999999 677776
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=188.88 Aligned_cols=255 Identities=18% Similarity=0.291 Sum_probs=181.6
Q ss_pred EEEecC--CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEe
Q 014472 130 RARYMP--QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 130 ~i~~~p--~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 207 (424)
+..|++ ...++||.+.++|.|.++|.....-..+ .........|...|..+.|.| +...|++++.|.++++||
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e----e~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE----ERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWD 128 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchh----hhhhcccccccceeEeeccCC-CceeEEEccCCceeeeee
Confidence 355544 5678999999999999999886322211 122345667999999999999 766899999999999999
Q ss_pred CCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC------------------------
Q 014472 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------------ 263 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------------ 263 (424)
+++.... ....+.+|.+.|.+++|.|.++.+|++|+.||.|.|||+|.....
T Consensus 129 vk~s~l~----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 129 VKTSRLV----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eccceee----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 9887442 223477899999999999999999999999999999999854310
Q ss_pred CCeeEecccCCCeeE---EEecCCCCeEEEEEeC-CCcEEEEECCCCCC-----c--ceeecCC---CCCEEEEEEcCCC
Q 014472 264 KPVQSVVAHQSEVNC---LAFNPFNEWILATGST-DKTVKLFDLRKIST-----A--LHTFDSH---KEEVFQVGWNPKN 329 (424)
Q Consensus 264 ~~~~~~~~~~~~v~~---i~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~-----~--~~~~~~~---~~~v~~~~~sp~~ 329 (424)
+.+....++...|.+ +.+..+.. .||+++. |+.|+|||+|+... + ...+..| ...++++.....|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 011122334444444 33444555 5777776 99999999997432 2 2223334 3467888888888
Q ss_pred CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCc--ceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI--SDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+++|+|. |+.|.+|++..... .+++.+.++...- ..-..+|++. .|++|+.|...++|.+.+-
T Consensus 284 t~L~AsCt-D~sIy~ynm~s~s~------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 284 TYLFASCT-DNSIYFYNMRSLSI------------SPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CeEEEEec-CCcEEEEeccccCc------------CchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCc
Confidence 76555555 99999999987543 3344444443211 1224689999 5999999999999999875
Q ss_pred C
Q 014472 408 I 408 (424)
Q Consensus 408 ~ 408 (424)
.
T Consensus 350 e 350 (720)
T KOG0321|consen 350 E 350 (720)
T ss_pred c
Confidence 3
No 137
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.4e-22 Score=165.39 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=180.6
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC-ceEEEE
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE-GHLLSG 197 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~ 197 (424)
.....|.++|.+++|+.+|. .+++|+.|+.+++||+.+ .....+..|.++|..+.|-+... ..|++|
T Consensus 66 ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S-----------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS-----------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred hhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC-----------CCeeeeeecccceeEEEEecCCCcceeEec
Confidence 34567999999999999996 788899999999999998 23566788999999999987433 268999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
|.|.+|+.||++.... +..+. -...+.++..- .+ +++.+..+..|.+|+++.+....... ....+-.++
T Consensus 134 SWDKTlKfWD~R~~~p------v~t~~-LPeRvYa~Dv~--~p-m~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R 202 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNP------VATLQ-LPERVYAADVL--YP-MAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTR 202 (347)
T ss_pred ccccceeecccCCCCe------eeeee-ccceeeehhcc--Cc-eeEEEecCCcEEEEEcCCCcchhhhh-cCcccceee
Confidence 9999999999986633 22222 35667766543 23 56678889999999998754311111 011344689
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCC-CCcceeecCCCC---------CEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHKE---------EVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~---------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
||+..++.+. .|.|+-.|.+.+..+... ...-.+|+.|.. +|++++|+|... .|++++.||+..+||-
T Consensus 203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred EEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 9999998884 799999999999988762 133455665652 688999999875 6999999999999998
Q ss_pred CCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCC
Q 014472 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 396 (424)
... ..+.....|..+|++.+|+.+|..+....|.|
T Consensus 281 dar--------------~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 281 DAR--------------TKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhh--------------hhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 764 33556677889999999999999655555544
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=166.68 Aligned_cols=250 Identities=18% Similarity=0.251 Sum_probs=186.5
Q ss_pred EEEEEEeccCCceeEEEecC------CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCC---eeeEEe
Q 014472 116 VQIIQQINHDGEVNRARYMP------QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE---GYGLSW 186 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p------~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~l~~ 186 (424)
.+..-+....+.|...+|-+ ....++|+.+.+.-|++||.-+ +..+.......|..+ ..+|+|
T Consensus 95 ~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft--------G~lraSy~~ydh~de~taAhsL~F 166 (406)
T KOG2919|consen 95 KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT--------GKLRASYRAYDHQDEYTAAHSLQF 166 (406)
T ss_pred cceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc--------cccccchhhhhhHHhhhhheeEEe
Confidence 33444556677888888863 1345899999999999999987 444444444456554 468999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCC-Ccccceee-eecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC
Q 014472 187 SKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
+|+|. .|++| ...+|+++|+...... ........ -.+..+-|.+++|+|....++|.|+....+-||.-....
T Consensus 167 s~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--- 241 (406)
T KOG2919|consen 167 SPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--- 241 (406)
T ss_pred cCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---
Confidence 99998 46655 5689999999443322 11111111 223467899999999998899999988888888766644
Q ss_pred CeeEecccCCCeeEEEecCCCCeEEEEEe-CCCcEEEEECCCCCCcceeecCCCC-CEEEEEE--cCCCCcEEEEEeCCC
Q 014472 265 PVQSVVAHQSEVNCLAFNPFNEWILATGS-TDKTVKLFDLRKISTALHTFDSHKE-EVFQVGW--NPKNETILASCCLGR 340 (424)
Q Consensus 265 ~~~~~~~~~~~v~~i~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~--sp~~~~~l~s~~~dg 340 (424)
++..+.+|.+.|+.+.|+++|+. |.+|. .|-.|..||+|....++..+..|.. .-..|.| .|.++ +|++|+.||
T Consensus 242 pl~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG 319 (406)
T KOG2919|consen 242 PLQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDG 319 (406)
T ss_pred ceeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCc
Confidence 68888899999999999999997 45555 5789999999998888888888766 4444555 57785 899999999
Q ss_pred eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014472 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
.|++||+.... ........|...++.++++|--+ ++++++
T Consensus 320 ~V~vwdlk~~g-------------n~~sv~~~~sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 320 SVRVWDLKDLG-------------NEVSVTGNYSDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred cEEEEecCCCC-------------CcccccccccccccceecCcccc-eeeecc
Confidence 99999998743 22344567788899999999988 777765
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=180.69 Aligned_cols=220 Identities=16% Similarity=0.255 Sum_probs=179.2
Q ss_pred cEEEecCCCCeeeEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
.....-+...|++++|+|..+ .++++|+.-|.|-+||+.+... ....+..+..|+.+|.++.|+|.+...+.+.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 445566889999999999877 6899999999999999974322 2234566788999999999999888788899999
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCC
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 329 (424)
|+|++-|+..... ..+.....-...+..+.|+...+. ++.|..=|...+||+|..+.....+..|...|.+++++|..
T Consensus 257 GtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 257 GTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred ceeeeeeecchhh-HHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 9999999987552 223333334556778889888875 55666666999999999777788888899999999999999
Q ss_pred CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
+++|||++.|++++|||++....... ++.....|...|.++.|+|.+.. |+|.+.|+.|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 99999999999999999998654221 24444578999999999999985 8888999999999985
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-22 Score=166.60 Aligned_cols=271 Identities=16% Similarity=0.233 Sum_probs=185.9
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|.+.|++++|+.+|+ .|||++.|+.|+||++..-..... +.+ ...---+-.+.+.|.|+-..+++++-..
T Consensus 82 LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~-R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEH-----RCI-RQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhh-----hHh-hccccCCCceEEEECCCcceEEEEEccC
Confidence 457999999999999997 899999999999999986322211 001 0111112357899999988777888788
Q ss_pred CcEEEEeCCCCCCCC-cc-----cceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 201 AQICLWDINAAPKNK-SL-----EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 201 g~i~vwd~~~~~~~~-~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
.++++|.+....... .. .....-..|...+..+-....+ .++++++.|..|.+|+++ ++. +..+.....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~---L~~idtnq~ 229 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQL---LQSIDTNQS 229 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cce---eeeeccccc
Confidence 899999876443211 11 1111123355566666665554 467799999999999999 443 555555566
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCC--C-----CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--S-----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~--~-----~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
.-+..+.+|+|+ ++|+++..-.|++|.+--. + ..+..+.+|...|..++|+++.. .+++.+.||+++|||+
T Consensus 230 ~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 230 SNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDT 307 (420)
T ss_pred cccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeec
Confidence 677789999998 5888888889999986321 1 34677889999999999999996 5889999999999998
Q ss_pred CCCCcc-cCC----------CccCCCCCee--------eE--------EE------------cCCCCCcceEEeCCCCCc
Q 014472 348 SRIDEE-QTP----------EDAEDGPPEL--------LF--------IH------------GGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 348 ~~~~~~-~~~----------~~~~~~~~~~--------~~--------~~------------~~h~~~v~~~~~~~~~~~ 388 (424)
...-.. +.+ ......|.++ +. .+ ..|...|.+++|+++|+
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~- 386 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK- 386 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCc-
Confidence 643111 000 0000001000 00 00 13778899999999999
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 014472 389 VISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~~~~ 407 (424)
.++|+| |..+++..-..+
T Consensus 387 ~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 387 YIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred EEeeec-ceeeeeecCCCc
Confidence 588876 778888874443
No 141
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.7e-23 Score=171.95 Aligned_cols=248 Identities=21% Similarity=0.356 Sum_probs=184.2
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCC-CCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF-KEGHLLSGSDDAQICLWDINAAPKNKSL 217 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 217 (424)
..+|++.++|.|++||..+ ......+.++...+..+.|... +.+.+.+|+.||+|++||++......
T Consensus 41 ~~vav~lSngsv~lyd~~t----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-- 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-- 108 (376)
T ss_pred eeEEEEecCCeEEEEeccc----------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh--
Confidence 3789999999999999987 5567788899999999999875 56679999999999999999875532
Q ss_pred cceeeeecCC-cceeeEEeeCCCCcEEEEEe----CCCeEEEEECCCCCCCCCeeE-ecccCCCeeEEEecCCCCeEEEE
Q 014472 218 EAMQIFKVHE-GVVEDVAWHLRHEYLFGSVG----DDQYLLIWDLRTPSVSKPVQS-VVAHQSEVNCLAFNPFNEWILAT 291 (424)
Q Consensus 218 ~~~~~~~~~~-~~v~~i~~~~~~~~~~~s~~----~dg~i~i~d~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~~ 291 (424)
...+..++ .+..+++.+..+ +++++|. .+-.|.+||+|..+. ++.. ...|...|+++.|+|..+++|++
T Consensus 109 --~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 109 --RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred --heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 22344444 456666655444 4777764 467899999998664 2322 35799999999999999999999
Q ss_pred EeCCCcEEEEECCCCC--CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC---------
Q 014472 292 GSTDKTVKLFDLRKIS--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE--------- 360 (424)
Q Consensus 292 g~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------- 360 (424)
|+.||.|.+||+.... ..+.....|...|.++.|...+-.-+.+-+......+|++..+.+......+.
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 9999999999998632 23444445788899999998873347777888889999998876543221110
Q ss_pred ----------------------C-CCCeee---------------EEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 361 ----------------------D-GPPELL---------------FIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 361 ----------------------~-~~~~~~---------------~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
. .....+ ..+ .+|...|.++.|...+. ++.|||+||.+++
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGLLQA 342 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCceEEE
Confidence 0 000011 111 24666788888987777 8999999999999
Q ss_pred Eec
Q 014472 402 WQM 404 (424)
Q Consensus 402 w~~ 404 (424)
|..
T Consensus 343 Wk~ 345 (376)
T KOG1188|consen 343 WKV 345 (376)
T ss_pred Eec
Confidence 996
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=169.01 Aligned_cols=259 Identities=18% Similarity=0.368 Sum_probs=185.3
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCC--CCCCCcEEEe-cCCCCeeeEEecCC------CCceEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLD--GACSPDLRLR-GHSTEGYGLSWSKF------KEGHLLS 196 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~-~h~~~v~~l~~~~~------~~~~l~s 196 (424)
.-...+.|+|+|. .|.+-+.|..+.+|++.......... ........++ .....|+..+|-+. ..+++++
T Consensus 50 nf~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 3456789999998 56667889999999987532221100 0011111122 13456788888521 3348999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCc---ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc--
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-- 271 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-- 271 (424)
.+.+.-|++||.-+++...++... .|.. ...+++|+|+|.++| ++...+|++||+..+....+......
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~y----dh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAY----DHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ccccCceeeeeccccccccchhhh----hhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcc
Confidence 999999999999988654433221 1332 346899999999876 46789999999943332223333323
Q ss_pred ---cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 272 ---HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 272 ---~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
..+.|.|++|+|....++|.|+...++-||.-.. ..|+..+.+|.+.|+.++|.++|..++..+-.|..|..||++
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 3678999999999888899999999999998776 788999999999999999999998644444447889999999
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCC-Ccce--EEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTS-KISD--FSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~--~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
... .++..+..|.. .-.. +...|+++ +|++|+.||.|++||+++
T Consensus 282 ~~~-------------~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSR-------------DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hcc-------------chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 854 44555555544 2222 45568899 799999999999999987
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.9e-23 Score=183.84 Aligned_cols=262 Identities=18% Similarity=0.289 Sum_probs=181.6
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
..-..+|.+.|.+|...|.|. .||+|+.||+|+||.+.+ ..++.++. ..+.|.||+|+|.+..-++++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~T----------gRcvr~~~-~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIAT----------GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeec----------ceEEEEEe-ecceeEEEEecCCCCceeEEE
Confidence 344568999999999999876 899999999999999998 45555544 456899999999876555555
Q ss_pred eCCCcEEEEeCCCCCCC----------------C------cc---------cceeeeecCCcceeeEEeeCCCCcEEEEE
Q 014472 198 SDDAQICLWDINAAPKN----------------K------SL---------EAMQIFKVHEGVVEDVAWHLRHEYLFGSV 246 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~----------------~------~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~~s~ 246 (424)
+....+.|-+..-+... . .+ ..+.....|...|..+.|+..|.++..++
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 55555666554322100 0 00 00112223555666666666655432222
Q ss_pred e-------------------------------------------CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 247 G-------------------------------------------DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 247 ~-------------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
. ....|+|||+..... +..+......|.+++.+|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---vKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---VKKLLTGSKWISSMSIHP 617 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH---HHHHhcCCeeeeeeeecC
Confidence 1 123344444433221 112223345688999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
.|.+ |+.|+.|+.+..||+.-..++.+++..|...+++++|++.-+ +|++|+.||++.||.-....... .+.-
T Consensus 618 ~GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~-----qnpl 690 (733)
T KOG0650|consen 618 NGDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLL-----QNPL 690 (733)
T ss_pred CCCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhh-----cCCc
Confidence 9997 778999999999999987789999999999999999999986 89999999999998654322110 0111
Q ss_pred CeeeEEEcCCCCC----cceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 364 PELLFIHGGHTSK----ISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 364 ~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
.-++..+.||... |.++.|+|..+| |++++.||+|++|
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf 732 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF 732 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence 2446677888765 889999999997 6677889999998
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=3e-23 Score=182.26 Aligned_cols=222 Identities=17% Similarity=0.250 Sum_probs=184.1
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
.|.++.++ .++++|+..+.|+|||+.. ....+.+.+|...|+++.++.... +|++++..|.|.|.
T Consensus 84 Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~----------kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih 148 (673)
T KOG4378|consen 84 CVACASQS----LYEISGGQSGCVKIWDLRA----------KLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIH 148 (673)
T ss_pred HHhhhhcc----eeeeccCcCceeeehhhHH----------HHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEE
Confidence 44444444 4899999999999999987 455677889999999999998776 89999999999999
Q ss_pred eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCC
Q 014472 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 286 (424)
.+.++.....+. ......|.-+.|++..+.++.+++++|.|.+||+..... .......|..+...|+|+|.++
T Consensus 149 ~~~t~~~tt~f~-----~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 149 GTKTKQKTTTFT-----IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred ecccCcccccee-----cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchhhhccCCcCcceecCCcc
Confidence 998876543332 122456779999999999999999999999999987553 2334467999999999999999
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCee
Q 014472 287 WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 287 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
.+|++.+.|..|.+||++. ......+.. ..+.+.++|+++| .+|++|...|.|..||++... .+
T Consensus 222 ~l~vsVG~Dkki~~yD~~s-~~s~~~l~y-~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k-------------~P 285 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRS-QASTDRLTY-SHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK-------------AP 285 (673)
T ss_pred ceEEEecccceEEEeeccc-ccccceeee-cCCcceeeecCCc-eEEEeecCCceEEEEecccCC-------------CC
Confidence 9999999999999999997 555555544 6789999999999 589999999999999999753 66
Q ss_pred eEEEcCCCCCcceEEeCCCC
Q 014472 367 LFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~ 386 (424)
+.+...|...|++++|.|..
T Consensus 286 v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEeeecccceeEEEeeecc
Confidence 77788899999999998864
No 145
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.1e-22 Score=183.83 Aligned_cols=120 Identities=24% Similarity=0.443 Sum_probs=105.2
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC------CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS------TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
..|+.+.|+|.....||+++.||.|++|.+...+ .+-..+..|...|+++.|+|-...+|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3478888999877789999999999999986533 4567788999999999999988789999999999999999
Q ss_pred CCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
.+. .....+.+|...|.+++|+|+|+ ++++.+.||+|+||+..++.
T Consensus 708 ~~~--------------~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 708 ANA--------------KLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhh--------------hhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCC
Confidence 986 34556789999999999999999 79999999999999998763
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.4e-21 Score=170.72 Aligned_cols=240 Identities=16% Similarity=0.258 Sum_probs=187.5
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
..|.|++|.+++. ++||.++|.|.||+... .+.......|.+.|.+|+...+|. |++|+.|..|..
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~----------~~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~ 312 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGT----------NRISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIIL 312 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCC----------ceEEeEeeecCCceEEEEEecCcc--EeecCccceEEe
Confidence 6899999999886 88999999999999866 444555559999999999998776 888999999999
Q ss_pred EeCCCCCCCCcc-----------------------------------cceeeeecCCcceeeEEeeCCCCcEEEEEeCCC
Q 014472 206 WDINAAPKNKSL-----------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ 250 (424)
Q Consensus 206 wd~~~~~~~~~~-----------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg 250 (424)
||-+-.+. +.. .......+|....+.++.+|+.+ ++++++.|+
T Consensus 313 Wd~~y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk 390 (626)
T KOG2106|consen 313 WDDNYRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDK 390 (626)
T ss_pred cccccccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcc
Confidence 99322111 000 11123456888999999999876 556999999
Q ss_pred eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCC
Q 014472 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 330 (424)
.+++|+ ..+ +.- ......++.|+.|+|.| .+|.|...|...+.|..+ ...+..... +.++++++|+|+|.
T Consensus 391 ~v~lW~--~~k---~~w-t~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 391 HVRLWN--DHK---LEW-TKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred eEEEcc--CCc---eeE-EEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCC
Confidence 999999 212 122 22346789999999988 599999999999999997 444444444 89999999999996
Q ss_pred cEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
+||.|+.|+.|.||.+...+... ..+.... .++|+.+.|++|++ ++.+-+-|-.|..|...
T Consensus 461 -~lAvgs~d~~iyiy~Vs~~g~~y----------~r~~k~~--gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 461 -FLAVGSHDNHIYIYRVSANGRKY----------SRVGKCS--GSPITHLDWSSDSQ-FLVSNSGDYEILYWKPS 521 (626)
T ss_pred -EEEEecCCCeEEEEEECCCCcEE----------EEeeeec--CceeEEeeecCCCc-eEEeccCceEEEEEccc
Confidence 89999999999999998754321 1222333 38899999999999 58898999999999443
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.4e-21 Score=175.54 Aligned_cols=253 Identities=17% Similarity=0.265 Sum_probs=197.9
Q ss_pred EEEEEec-cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CCeeeEEecCCCCceE
Q 014472 117 QIIQQIN-HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSWSKFKEGHL 194 (424)
Q Consensus 117 ~~~~~~~-h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l 194 (424)
+-++.+. .+.+|.++||+.+.. .||.+-.+|.|.||++.. .+.....+.++. ..|-+|+|++.+ .|
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~---------~w~~~~vi~g~~drsIE~L~W~e~~--RL 83 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSN---------NWFLEPVIHGPEDRSIESLAWAEGG--RL 83 (691)
T ss_pred EEEEEEeeeccceEEEEEeccCC-ceeeeccCCcEEEEccCC---------CceeeEEEecCCCCceeeEEEccCC--eE
Confidence 3333443 578999999999876 699999999999999987 244455566654 579999999644 59
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++.+.+|.|.-||+.+. ++...+....+.|++++.+|.+. .++.|++||.+..++...+.. ..-..+...++
T Consensus 84 FS~g~sg~i~EwDl~~l------k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I-~~~r~l~rq~s 155 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTL------KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKI-TYKRSLMRQKS 155 (691)
T ss_pred EeecCCceEEEEecccC------ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceE-EEEeecccccc
Confidence 99999999999999776 44555666789999999999885 667899999777777766542 22223344568
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-----cC---CCCCEEEEEEcCCCCcEEEEEeCCCeEEEee
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-----DS---HKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~---~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
.|.+++|+|++.. +++|+.||.|++||..+ +..++.. .. ...-|+++.|-.++ .+++|...|+|.+||
T Consensus 156 RvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 156 RVLSLSWNPTGTK-IAGGSIDGVIRIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWD 231 (691)
T ss_pred eEEEEEecCCccE-EEecccCceEEEEEcCC-CceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEc
Confidence 9999999999974 99999999999999988 3333311 11 23357888888666 599999999999999
Q ss_pred CCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 347 LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
...+ .++..+..|.+.|.+++..+++. .++++|.|+.|..+...++.
T Consensus 232 ~~~g--------------TLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 232 SIFG--------------TLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ccCc--------------chhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCc
Confidence 9886 55667788899999999999988 58888999999999888773
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.4e-22 Score=178.34 Aligned_cols=240 Identities=17% Similarity=0.273 Sum_probs=195.5
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-...|.++...|+++ -|++|+.-.++.|||+... .......+....-..++|+.+|+.+ +.++|..||.|
T Consensus 464 rdnyiRSckL~pdgr-tLivGGeastlsiWDLAap--------TprikaeltssapaCyALa~spDak-vcFsccsdGnI 533 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAP--------TPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNI 533 (705)
T ss_pred cccceeeeEecCCCc-eEEeccccceeeeeeccCC--------CcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcE
Confidence 456788899999997 5777888999999999872 1222233443445678999999887 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
.|||+... ..++.+++|.+.+.||..+++|..+. +|+-|.+|+.||+|.+.. +.. ....+.|.++..+|
T Consensus 534 ~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrq---lqq-hdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 534 AVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQ---LQQ-HDFSSQIFSLGYCP 602 (705)
T ss_pred EEEEcccc------eeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhh---hhh-hhhhhhheecccCC
Confidence 99999876 35677899999999999999998776 999999999999998764 222 12467899999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 284 FNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
.+.+ +|.|-.++.+-|...+. .....+..|.+-|.++.|.+.|+ ++++.+.|+.+..|....+.
T Consensus 603 ~~dW-lavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGa------------ 666 (705)
T KOG0639|consen 603 TGDW-LAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA------------ 666 (705)
T ss_pred Cccc-eeeecccCcEEEEecCC--ccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcccc------------
Confidence 9995 89999999988887764 45567778999999999999997 68899999999999987763
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
.+|... ..+.|.++..+.+.+ +|+||+.|....||.+
T Consensus 667 --siFqsk-E~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 --SIFQSK-ESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred --ceeecc-ccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 244433 245799999999999 6999999999998875
No 149
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.2e-21 Score=161.59 Aligned_cols=233 Identities=16% Similarity=0.274 Sum_probs=174.4
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCC--CCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPP--LDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL 217 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 217 (424)
-|++|++...|.=+++...+.... ......+...+..|.+++++|+.+ +. ++++|+.|-+|+|||+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~----- 74 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRK----- 74 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchh-----
Confidence 367788888888787765441111 112344577788999999999986 55 89999999999999998763
Q ss_pred cceeeeecCCcceeeEEeeCCCC--cEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCC
Q 014472 218 EAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 218 ~~~~~~~~~~~~v~~i~~~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d 295 (424)
.+..+..|.+.|+++.|.+.-. +++ +|++||.|.+|+...-. .+..+++|.+.|+.++.+|.++ +.++.+.|
T Consensus 75 -qlg~ll~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~---~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D 148 (362)
T KOG0294|consen 75 -QLGILLSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWE---LLKSLKAHKGQVTDLSIHPSGK-LALSVGGD 148 (362)
T ss_pred -hhcceeccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeE---EeeeecccccccceeEecCCCc-eEEEEcCC
Confidence 3455667999999999988654 565 99999999999998844 5888899999999999999998 78888899
Q ss_pred CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC
Q 014472 296 KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
+.+++||+-+ ++.-..... ....+.+.|+|.|.+ ++.++.++ |-||.+.+... .... ....
T Consensus 149 ~~lr~WNLV~-Gr~a~v~~L-~~~at~v~w~~~Gd~-F~v~~~~~-i~i~q~d~A~v--------------~~~i-~~~~ 209 (362)
T KOG0294|consen 149 QVLRTWNLVR-GRVAFVLNL-KNKATLVSWSPQGDH-FVVSGRNK-IDIYQLDNASV--------------FREI-ENPK 209 (362)
T ss_pred ceeeeehhhc-Cccceeecc-CCcceeeEEcCCCCE-EEEEeccE-EEEEecccHhH--------------hhhh-hccc
Confidence 9999999987 444333332 233345999999984 66666664 99999876422 1111 1123
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+.++.|-..+. |++|++|+.|.+||-++.
T Consensus 210 r~l~~~~l~~~~--L~vG~d~~~i~~~D~ds~ 239 (362)
T KOG0294|consen 210 RILCATFLDGSE--LLVGGDNEWISLKDTDSD 239 (362)
T ss_pred cceeeeecCCce--EEEecCCceEEEeccCCC
Confidence 466677765554 788899999999999863
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=5.1e-21 Score=174.73 Aligned_cols=260 Identities=18% Similarity=0.344 Sum_probs=199.1
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCCeeeEEecCCCCceEEEEe
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
++|.+-|+++.|+|.+. .|.+++.|.++.+|.-... .+.+.....+. +.....++.-|+|++. .+++-+
T Consensus 264 ~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g 335 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDEN------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHG 335 (764)
T ss_pred cCcccceEEEEEccchh-hheecccCcceEEEecCCc------cceEEEEEEeecccccccceeeEEEcCCCC-EEEEec
Confidence 48999999999999885 5777899999999997761 12233333332 3345678999999886 788889
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC---------------
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS--------------- 263 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~--------------- 263 (424)
..|..++|..... ..........+|...|.+++|+|.|.+++ +++.|.+-|+|-.-..+..
T Consensus 336 ~~Gg~hlWkt~d~---~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 336 RTGGFHLWKTKDK---TFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred ccCcEEEEeccCc---cceeeccccccccccceeeeecCCCCEEE-Eeccccceeeecccccccceeeecccccccccce
Confidence 9999999983221 33344556778999999999999998665 7788888777633200000
Q ss_pred --------------------------------------------------------------------------------
Q 014472 264 -------------------------------------------------------------------------------- 263 (424)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (424)
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence
Q ss_pred ------------------------CCeeEecccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceeec
Q 014472 264 ------------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHTFD 314 (424)
Q Consensus 264 ------------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~ 314 (424)
..++.+.+|.-.|++++.+|+++ ++|+++... .|++|+..+ ...+..+.
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~-W~~~~~L~ 569 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTAN-WLQVQELE 569 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccc-hhhhheec
Confidence 11233457888899999999887 799988653 699999988 56677899
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe
Q 014472 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA 394 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 394 (424)
.|.-.|+.++|||+++ +|++.+.|.++.+|......... .-......|+.-|++..|+|++.+ ++|+|
T Consensus 570 ~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e----------~~fa~~k~HtRIIWdcsW~pde~~-FaTaS 637 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDE----------FRFACLKAHTRIIWDCSWSPDEKY-FATAS 637 (764)
T ss_pred ccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchh----------hhhccccccceEEEEcccCcccce-eEEec
Confidence 9999999999999996 78999999999999985432110 112235789999999999999996 99999
Q ss_pred CCCcEEEEecCCC
Q 014472 395 EDNILQIWQMAEN 407 (424)
Q Consensus 395 ~d~~i~iw~~~~~ 407 (424)
.|.+|+||....+
T Consensus 638 RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 RDKKVKVWEEPDL 650 (764)
T ss_pred CCceEEEEeccCc
Confidence 9999999999887
No 151
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=1.8e-21 Score=166.63 Aligned_cols=217 Identities=20% Similarity=0.342 Sum_probs=176.2
Q ss_pred EEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC-cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCe
Q 014472 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK-SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY 251 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~ 251 (424)
.+.+|.++|..++|+|.+.+.||+||.|.+|.||.+-.+.... ...++..+.+|...|.-++|+|...+++++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4678999999999999999899999999999999997665433 235677789999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCC-CEEEEEEcCCCC
Q 014472 252 LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-EVFQVGWNPKNE 330 (424)
Q Consensus 252 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~sp~~~ 330 (424)
|.+|++.+++. +.++. |..-|.+++|+.+|. +|++++.|..|+|||.|+ +..+..-.+|.+ .-..+.|-.++.
T Consensus 156 v~iWnv~tgea---li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEA---LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCce---eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCc
Confidence 99999999875 44555 999999999999998 799999999999999998 777777777765 456778888886
Q ss_pred cEEEEEe---CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 331 TILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 331 ~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
++.+|- .+..+.+||..+..+. ..+..+.. .+.|.---|.++...+.++|-.|+.|+-|.+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP-----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEP-----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -eeeeccccccccceeccCcccccCc-----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555553 3678999999876532 23333433 3346656678888866677778999999999876
Q ss_pred C
Q 014472 408 I 408 (424)
Q Consensus 408 ~ 408 (424)
.
T Consensus 297 ~ 297 (472)
T KOG0303|consen 297 P 297 (472)
T ss_pred C
Confidence 4
No 152
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.1e-21 Score=167.54 Aligned_cols=257 Identities=11% Similarity=0.184 Sum_probs=190.3
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
+.|+++.|+|..+ ++.+|+.||.++||.++... ...+..+.--..+|.+.+|.|+|...+++++....++.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~--------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKV--------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CCceEEEecCCCc-eEEEecCCCcEEEEEecCcc--------ChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 7999999999887 88899999999999998732 23355566667899999999999878999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCC-cceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 206 WDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
||+.+.+.. .+....++. ..+.....+++++ +||..+..|.|.+....+++. +..++ -.+.|..++|+.+
T Consensus 285 yDle~ak~~----k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el---i~s~K-ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 285 YDLETAKVT----KLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL---ITSFK-IEGVVSDFTFSSD 355 (514)
T ss_pred eeccccccc----cccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh---hheee-eccEEeeEEEecC
Confidence 999876442 223333333 4567788899987 567889999999999988775 44433 3678999999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCC--EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc----
Q 014472 285 NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED---- 358 (424)
Q Consensus 285 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 358 (424)
+.. |++.+.+|.|.+||++. ..+++.+.. .+. -++++.++++. +||+|+..|.|.|||..+......+..
T Consensus 356 sk~-l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 356 SKE-LLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred CcE-EEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 985 55556688999999998 577777764 333 46777789986 899999999999999765322111000
Q ss_pred ---------------cC---------CCCCeeeE-----EE------cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 359 ---------------AE---------DGPPELLF-----IH------GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 359 ---------------~~---------~~~~~~~~-----~~------~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.+ ....+++. ++ ...-+.|++++|+|.+. +||.|..+|.+.+|.
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG-~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG-YLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-eEEeecCCCceeeEe
Confidence 00 00001110 00 12234689999999998 699999999999999
Q ss_pred cC
Q 014472 404 MA 405 (424)
Q Consensus 404 ~~ 405 (424)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 85
No 153
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.9e-21 Score=164.50 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=196.4
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEe
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
...+|.+.|++|.|+.+++ +||+|+.|..+++|++...-.. ...+|+.... .|...|.||+|...+. .+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~----k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~ 124 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVR----KTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGE 124 (609)
T ss_pred hhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhh----cCCCCceeccCccccceEEEEEccCCe-eEecCC
Confidence 3568999999999999865 9999999999999998752110 1124443333 3568999999998554 799999
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeee--cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
.+++|.+.|+.+.+. +..+. ...+.|..+..+|.. ++|++.+.+|.|.+||.|.......+..........
T Consensus 125 ~~~~VI~HDiEt~qs------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQS------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CcceeEeeeccccee------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999999987643 22222 234589999999995 577899999999999999766322233333456678
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-------------------------------------cCCC--
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-------------------------------------DSHK-- 317 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------------------------------~~~~-- 317 (424)
.++.|+|..+.+|++.+..+-+.+||+|....++... ..|.
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 8999999999999999999999999998754321111 0011
Q ss_pred ----------------CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC----CccCCCC-----CeeeEEEcC
Q 014472 318 ----------------EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP----EDAEDGP-----PELLFIHGG 372 (424)
Q Consensus 318 ----------------~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~-----~~~~~~~~~ 372 (424)
..+.+++|..+. -+++|+.+-.|.+|.+......... .+.+.-| ...+.+++|
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 124445554443 3789999989999998754432221 0111111 234567899
Q ss_pred CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 373 HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 373 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
|.+.++.+.|+|... +|++.+-.+.++||.....
T Consensus 356 HRSv~NQVRF~~H~~-~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNN-LLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred ccccccceeecCCcc-eEeccchhhheeccccccC
Confidence 999999999999987 8999999999999987654
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=161.83 Aligned_cols=221 Identities=17% Similarity=0.272 Sum_probs=168.0
Q ss_pred EEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeE
Q 014472 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYL 252 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i 252 (424)
.+.+|.+.|++++|+.+|. .|++++.|++|++|+++.-... .-++++.-. .-+..+.++|.|+-+.+++++-...++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENK-EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhh-hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 4789999999999999998 7999999999999999764221 111111111 123567899999999888888888899
Q ss_pred EEEECCCCCCCC-C-----ee---EecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEE
Q 014472 253 LIWDLRTPSVSK-P-----VQ---SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQV 323 (424)
Q Consensus 253 ~i~d~~~~~~~~-~-----~~---~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 323 (424)
++|.+...+... + +. .-..|...+..+-....+. +|++++.|..|.+||++ ++.+..+......-+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Cceeeeeccccccccce
Confidence 999875432110 1 11 1123556666676666555 79999999999999999 68888888878888899
Q ss_pred EEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
+.||+|+ ++++++..--|++|.+--.+.-... .....+.+.||.+.|..++|+++.+ .++|.+.||.++|||
T Consensus 235 avSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 235 AVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWD 306 (420)
T ss_pred eeCCCCc-EEEEecCCCCceEEEEEeccCcchh------hhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEee
Confidence 9999996 7888888778999997543321110 1245778899999999999999999 699999999999999
Q ss_pred cCCC
Q 014472 404 MAEN 407 (424)
Q Consensus 404 ~~~~ 407 (424)
.+-.
T Consensus 307 tdVr 310 (420)
T KOG2096|consen 307 TDVR 310 (420)
T ss_pred ccce
Confidence 8755
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=6.9e-22 Score=165.39 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=187.8
Q ss_pred cCCceeEEEecCC---CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 124 HDGEVNRARYMPQ---NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 124 h~~~v~~i~~~p~---~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
|......++|+-+ +.-++|+|+.-|.|+|.|+.+ .+....+.+|...|..|.++|..++++++||.|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~----------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch----------hhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 5556666777542 223788888999999999988 566778999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC---------------C-
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---------------K- 264 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---------------~- 264 (424)
.+|++|++++..+. ....-+.+|.+.|.++.|++++. .|++++.|.+|++|++...+.. .
T Consensus 158 ~svRlwnI~~~~Cv---~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCV---AVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ceEEEEeccCCeEE---EEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 99999999887432 22334568999999999999998 5679999999999999843210 0
Q ss_pred --------Ce-eEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-------------ceeecCCCCCEEE
Q 014472 265 --------PV-QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-------------LHTFDSHKEEVFQ 322 (424)
Q Consensus 265 --------~~-~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~v~~ 322 (424)
+. .+...|...|-|+.|- |+ ++++-+-++.|..|-.-..++. +..+......|+-
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~--gd-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWF--GD-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred CCccccccccccccccccchHHHHHHH--hh-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 00 1223477778888886 55 6888888999999987322222 3334444555555
Q ss_pred EEE--cCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014472 323 VGW--NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 323 ~~~--sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 400 (424)
+.| .|-++ +||.|...|.|.+||++..... ......+.-....|...+|+.++. +|+...+|++|.
T Consensus 311 irf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 311 IRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVW 378 (385)
T ss_pred EEEeecHHHH-HHhhccCCCcEEEEECCCCCCc----------cCceEEeccccceeeeeeecccCc-EEEEEeCCCcEE
Confidence 554 56664 7999999999999999985432 112222333356799999999999 677788999999
Q ss_pred EEecC
Q 014472 401 IWQMA 405 (424)
Q Consensus 401 iw~~~ 405 (424)
-||.-
T Consensus 379 rwdrv 383 (385)
T KOG1034|consen 379 RWDRV 383 (385)
T ss_pred EEEee
Confidence 88853
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-21 Score=171.77 Aligned_cols=246 Identities=17% Similarity=0.311 Sum_probs=185.9
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEe
Q 014472 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 207 (424)
++.+.|+..+...+|+.+.|..|++|.-..... .......+.+. .-.|++...... ++++|+..+.|+|||
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~------~Vp~~~k~~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP------EVPRVRKLTGD--NAFCVACASQSL-YEISGGQSGCVKIWD 107 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCC------ccceeeccccc--hHHHHhhhhcce-eeeccCcCceeeehh
Confidence 888999876644555566788999998765211 11112222222 334454444344 799999999999999
Q ss_pred CCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCe
Q 014472 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 287 (424)
++.. .+.+.+..|.+.|+++.++..+. .||+++..|.|.|..+.++....++. ......|.-+.|+|..++
T Consensus 108 l~~k------l~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~--~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 108 LRAK------LIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFT--IDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred hHHH------HHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcccccee--cCCCCeEEEeecccccce
Confidence 9743 24556778999999999998876 46899999999999999876422222 122456778999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeee
Q 014472 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 288 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+|.+++.+|.|.+||+............|..+...++|+|..+.+|++.+.|..|.+||++...... .+.
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~ 248 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLT 248 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eee
Confidence 9999999999999999985555556678999999999999999999999999999999998632111 111
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
-..+...++|.++|. .|+.|...|.|..||+..-
T Consensus 249 -----y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 -----YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----ecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 234689999999999 5888999999999999754
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=1.7e-20 Score=160.78 Aligned_cols=214 Identities=17% Similarity=0.297 Sum_probs=170.4
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|.++|..++|+|.+.+.||+|+.|.+|.||.+....... ....+...+.+|...|.-++|+|...+.|++++.|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccccc---CcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 38999999999999988899999999999999998643333 224678899999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC-CeeEEE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS-EVNCLA 280 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~v~~i~ 280 (424)
+|.+|++.++.. +..+. |.+.|.++.|+.+|. ++++++.|..|+|||.|++.. +..-.+|.+ .-..+-
T Consensus 155 ~v~iWnv~tgea------li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~---v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 155 TVSIWNVGTGEA------LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV---VSEGVAHEGAKPARAI 223 (472)
T ss_pred eEEEEeccCCce------eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE---eeecccccCCCcceeE
Confidence 999999998843 23334 999999999999997 667999999999999999875 444456654 344556
Q ss_pred ecCCCCeEEEEEe---CCCcEEEEECCCCCCcceeecC-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 281 FNPFNEWILATGS---TDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 281 ~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
|-.++. ++.||. .+..+.+||..+...++..... .++.|.---|.++..-+.++|-.|+.|+-|.+...
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 666676 555554 3678999999987777543332 24567666788888755667777999999999874
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.3e-20 Score=155.08 Aligned_cols=235 Identities=17% Similarity=0.251 Sum_probs=175.0
Q ss_pred CCcEEEEEEe-ccCCceeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC
Q 014472 113 NGKVQIIQQI-NHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 113 ~~~~~~~~~~-~h~~~v~~i~~~p~-~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
.++..+.... .|.+.|..+.|.+. =..++|+++.|+++.||.-....... ....+....++......|+++.|.|..
T Consensus 46 s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~h 124 (361)
T KOG2445|consen 46 SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKH 124 (361)
T ss_pred CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc-ccceeEEEEEeecCCcceeEEEecchh
Confidence 3455555544 59999999999663 23499999999999999875322211 112456667788888999999999975
Q ss_pred Cc-eEEEEeCCCcEEEEeCCCCCCCCcccceeeee-------cCCcceeeEEeeCCC--CcEEEEEeCC-----CeEEEE
Q 014472 191 EG-HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-------VHEGVVEDVAWHLRH--EYLFGSVGDD-----QYLLIW 255 (424)
Q Consensus 191 ~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~i~~~~~~--~~~~~s~~~d-----g~i~i~ 255 (424)
-+ .|++++.||.++||+.-.............++ .+..+..|+.|+|.. ..+||.|+.+ +.++||
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 44 48899999999999986654444443333333 466788899998742 3467777765 478888
Q ss_pred ECCCCC-CCCCeeEecccCCCeeEEEecCCCC---eEEEEEeCCCcEEEEECCCCC-------------------Cccee
Q 014472 256 DLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNE---WILATGSTDKTVKLFDLRKIS-------------------TALHT 312 (424)
Q Consensus 256 d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~~g~~dg~i~iwd~~~~~-------------------~~~~~ 312 (424)
...... ....+..+..|+.+|+.|+|.|.-. ++||+++.|| |+||.++... +.+..
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 765443 3455667789999999999999643 5899999999 9999987311 12455
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 313 FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 313 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+..|++.|.++.|+-.| .+|++.+.||.|++|...-.
T Consensus 284 ~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence 77899999999999999 58999999999999987653
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4.7e-21 Score=175.46 Aligned_cols=258 Identities=16% Similarity=0.232 Sum_probs=191.6
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC----------CceEEEEeC
Q 014472 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK----------EGHLLSGSD 199 (424)
Q Consensus 130 ~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----------~~~l~s~~~ 199 (424)
++.|.|... .|.+-..|..++|||+..... ......+.-|...|+++.--|-+ ...|++|+.
T Consensus 329 A~~Fdet~~-klscVYndhSlYvWDvrD~~k-------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 329 ACQFDETTD-KLSCVYNDHSLYVWDVRDVNK-------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EEEecCCCc-eEEEEEcCceEEEEecccccc-------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 677888776 566668899999999987321 22234455688888888765521 125999999
Q ss_pred CCcEEEEeCCCCCCCCcc-------------------------------cceeeeecCCcceeeEEeeCCCCcEEEEEeC
Q 014472 200 DAQICLWDINAAPKNKSL-------------------------------EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~ 248 (424)
|++|++|++........+ +.....-.....+.+++.+|++++ +|+|..
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh-LAsGDr 479 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH-LASGDR 479 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce-ecccCc
Confidence 999999999864221110 000111123447899999999985 579999
Q ss_pred CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC--CCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEc
Q 014472 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF--NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 326 (424)
-|.++||++...+. ...+.+|...|.|+.|+.- +..+||+++.|+.|+|||+.....++.++.+|...|+++.|.
T Consensus 480 ~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred cCceEEEEehhhhh---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEe
Confidence 99999999988554 5667899999999999742 335899999999999999987678888999999888888886
Q ss_pred CCCC------------------------------------------------cEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 327 PKNE------------------------------------------------TILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 327 p~~~------------------------------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
-.|- .++++++.|..|+||++..++..+
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k---- 632 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK---- 632 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee----
Confidence 5441 246778888888888887765422
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
...--.+|.+....+...|.|-| |++...|.++.++|+.++.+.+
T Consensus 633 -------~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 633 -------SFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred -------eecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccchhhh
Confidence 12223456677888999999995 8888899999999999987654
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=1.7e-21 Score=163.13 Aligned_cols=270 Identities=17% Similarity=0.268 Sum_probs=196.2
Q ss_pred EEeccCCceeEEEecC----CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCCCCeeeEEecCC---C
Q 014472 120 QQINHDGEVNRARYMP----QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHSTEGYGLSWSKF---K 190 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p----~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~---~ 190 (424)
-+..|..+|..++|++ +.+.++|+.+. ..+.+|...... ......... .|....+.++|+-+ +
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~-------~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG-------GIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc-------ceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 3456889999999985 45668888774 579999987621 111111111 36777888999754 2
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
.-++|+|+.-|.|+|.|+.+++ ....+.+|...|+.|.++|..++++++++.|..|++|++++..+...+.-+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred CeeEEeecceeEEEEEecchhh------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 3378999999999999998774 4566788999999999999999999999999999999999987744444557
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--C------------------------cc-eeecCCCCCEEEE
Q 014472 271 AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--T------------------------AL-HTFDSHKEEVFQV 323 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~------------------------~~-~~~~~~~~~v~~~ 323 (424)
+|...|.++.|++++. .|++++.|.+|++|++.... . |. .+-..|...|-|+
T Consensus 179 gHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred cccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 8999999999999999 59999999999999998311 0 00 1223467777777
Q ss_pred EEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEe--CCCCCcEEEEEeCCCcEEE
Q 014472 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW--NPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~i 401 (424)
.|-- . ++++-+-++.|..|......+..............+..+.-....|+-+.| .|-++ +||.|...|.|.+
T Consensus 258 rw~g--d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~v 333 (385)
T KOG1034|consen 258 RWFG--D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYV 333 (385)
T ss_pred HHHh--h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEE
Confidence 7753 3 677888888999999854332211111112222344445544555666554 56677 7999999999999
Q ss_pred EecCCCC
Q 014472 402 WQMAENI 408 (424)
Q Consensus 402 w~~~~~~ 408 (424)
||+....
T Consensus 334 wdL~~~e 340 (385)
T KOG1034|consen 334 WDLDNNE 340 (385)
T ss_pred EECCCCC
Confidence 9998764
No 161
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=3.4e-21 Score=158.54 Aligned_cols=213 Identities=23% Similarity=0.429 Sum_probs=167.4
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
+-+.|.|+.|.|++. .+|+- .+..|.+|++........ ..+...-..|....++-+|+|.....-+....|+++
T Consensus 122 avg~i~cvew~Pns~-klasm-~dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSD-KLASM-DDNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred HhCceeeEEEcCCCC-eeEEe-ccCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 557999999999876 45543 388999999987433110 000111122566788999999544445555678999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNP 283 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~ 283 (424)
..||+++..+...+ -..|...|.++.|+|+-.+++|+|++||.|++||+|..+. ++..+.+|...|.++.|+|
T Consensus 196 ~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSI-----EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred EEEEccchhhhcch-----hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecC
Confidence 99999977543333 3468889999999999999999999999999999998765 7888999999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCC----------------------------CcceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 284 FNEWILATGSTDKTVKLFDLRKIS----------------------------TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 284 ~~~~~l~~g~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
....++++|+.|..|.+|...... ..+.++..|...|.+++|+.-.+.+||+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 888899999999999999654311 1245777899999999999999999999
Q ss_pred EeCCCeEEEeeCCC
Q 014472 336 CCLGRRLMVWDLSR 349 (424)
Q Consensus 336 ~~~dg~i~iwd~~~ 349 (424)
-+.||++.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 99999999876653
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.3e-19 Score=163.72 Aligned_cols=237 Identities=14% Similarity=0.104 Sum_probs=163.6
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
.++++++.|+.|++||+.+ ......+..+. .+.+++|+|++..++++++.++.|++||+.++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t----------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----- 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT----------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----- 65 (300)
T ss_pred cEEEEecCCCEEEEEECCC----------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----
Confidence 3788999999999999876 34455555544 4678999999874446778899999999987632
Q ss_pred ceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC-c
Q 014472 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK-T 297 (424)
Q Consensus 219 ~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg-~ 297 (424)
...+..+. .+..++|+|+++.++++++.++.|++||+++... +..+. +...+.+++|+|++. ++++++.++ .
T Consensus 66 -~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~---~~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~ 138 (300)
T TIGR03866 66 -IGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV---LAEIP-VGVEPEGMAVSPDGK-IVVNTSETTNM 138 (300)
T ss_pred -EEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE---EeEee-CCCCcceEEECCCCC-EEEEEecCCCe
Confidence 22233232 3567899999987777777899999999987543 33333 234578899999998 466666654 5
Q ss_pred EEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCC--CC
Q 014472 298 VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH--TS 375 (424)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~ 375 (424)
+.+||.++ ...+..... ...+..++|+|++..+++++..++.|.+||+.++........ .....+ ..
T Consensus 139 ~~~~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~---------~~~~~~~~~~ 207 (300)
T TIGR03866 139 AHFIDTKT-YEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF---------EIPGVHPEAV 207 (300)
T ss_pred EEEEeCCC-CeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee---------cccccccccC
Confidence 77889886 444433332 345678999999975556666799999999987543211100 000001 11
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
....++|+|+++.++++.+.++.+.+||+.++.+
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 2456899999996566666678899999987654
No 163
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2.2e-19 Score=158.54 Aligned_cols=244 Identities=19% Similarity=0.273 Sum_probs=187.8
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCCeeeEEecCCCCceEEEEeCCCc
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-++.|....|+|.+++++++++ .|.+..|+...... .+....+..+ +.-|.|++|.+++. +++|..+|.
T Consensus 199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l-------~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~ 268 (626)
T KOG2106|consen 199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSL-------VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGN 268 (626)
T ss_pred ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCce-------EEEeeccccccceEEEEEEEcCCCC--EEeecCCce
Confidence 4567889999999999999877 58999999876211 1112223332 25689999999887 999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC-------------------
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS------------------- 263 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~------------------- 263 (424)
|.||+..+.. ..+....|.+.|.+++...+|. ++ +|+.|..|..||-.-.+..
T Consensus 269 i~Iw~~~~~~------~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 269 ILIWSKGTNR------ISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred EEEEeCCCce------EEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 9999996552 2233337999999999998885 54 7999999999983211100
Q ss_pred ------------------CCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEE
Q 014472 264 ------------------KPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW 325 (424)
Q Consensus 264 ------------------~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 325 (424)
.......+|......++.+|+.+ ++++++.|+.+++|+ . .++..+... ..++.++.|
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~-~k~~wt~~~-~d~~~~~~f 415 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--D-HKLEWTKII-EDPAECADF 415 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--C-CceeEEEEe-cCceeEeec
Confidence 00112346777888899999877 799999999999999 2 345444443 678899999
Q ss_pred cCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
+|.| .+|.|...|...+.|..+. .++..+.. ..+++.++|+|+|. +||.|+.|+.|+||.++
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~~--------------~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTETQ--------------DLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS 477 (626)
T ss_pred cCcc--eEEEeeccceEEEEecccc--------------eeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC
Confidence 9999 6999999999999999873 45555555 78899999999999 79999999999999998
Q ss_pred CCC
Q 014472 406 ENI 408 (424)
Q Consensus 406 ~~~ 408 (424)
.+.
T Consensus 478 ~~g 480 (626)
T KOG2106|consen 478 ANG 480 (626)
T ss_pred CCC
Confidence 763
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.2e-21 Score=172.35 Aligned_cols=267 Identities=15% Similarity=0.184 Sum_probs=194.1
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
....|...|+.++|+|..+ .|++++.||.+.+|++.. ..........++.++.+|.++|.|++..+++. .+++|+-
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence 4456899999999999887 799999999999999954 22223356788999999999999999999887 7999999
Q ss_pred CCcEEEEeCCCCCCC----CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
||+|+.|++...... ........+.+|.+.|+.+++++...+ +++++.||++++|+...... +......-.+.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~ 441 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP--CTFGEPKEHGY 441 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc--cccCCccccCC
Confidence 999999977532211 111234567899999999999998765 45999999999999876543 11111112234
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC-------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS-------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
..++++-.......++...-+.-.+++... ...+..+.. ....+..+.++|..+ +.+++..|+.|+++|..
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNK 519 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceeccccc
Confidence 455665543322222222223333333332 122222221 124578899999996 78899999999999998
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
++ .+++....|...++++++.|+|. .|++++.|+.+++|++....+.
T Consensus 520 ~~--------------~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 520 TG--------------KILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred cc--------------ccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchhee
Confidence 86 56777788999999999999999 5999999999999999765544
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=8e-20 Score=157.20 Aligned_cols=291 Identities=22% Similarity=0.328 Sum_probs=204.0
Q ss_pred CCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEe-ccCCceeEEEecCCCCcEEEEEecCCeEEE
Q 014472 74 ENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQI-NHDGEVNRARYMPQNPFLIATKTVSAEVYV 152 (424)
Q Consensus 74 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~~p~~~~~latg~~dg~v~i 152 (424)
++.++.|++|.+.-..... ..++++....+ .|..+|++++|+|+|. ++|+|+.+|.|.+
T Consensus 32 ~G~D~~iriW~v~r~~~~~-------------------~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~l 91 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGG-------------------GDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFL 91 (434)
T ss_pred ccCccceeeeeeeecCCCC-------------------CceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEE
Confidence 4567889999985321100 11456666655 4889999999999997 9999999999999
Q ss_pred EeCCCCCCC------CCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014472 153 FDYSKHPSK------PPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH 226 (424)
Q Consensus 153 wd~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 226 (424)
|......-. ......+.....+.+|...|+.++|+|++. ++++++.|..+++||+..+. ....+..|
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~------l~~~~~dh 164 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ------LLAILDDH 164 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce------eEeecccc
Confidence 987731110 001133555667889999999999999887 79999999999999998883 45667789
Q ss_pred CcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee--Ee--------------cccC----CCeeEEEecCCCC
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SV--------------VAHQ----SEVNCLAFNPFNE 286 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~--------------~~~~----~~v~~i~~~~~~~ 286 (424)
...+..++|.|.+++ +++-+.|...+.+.+...+....+. .+ -.|. .-...++|+|+|.
T Consensus 165 ~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 999999999999875 4577778767766665433211111 00 0111 2345678999998
Q ss_pred eEEEEEeC----C-----CcEEEEECCCCCCcceeecCCCCCEEEEEEcCC-----------------CCcEEEEEeCCC
Q 014472 287 WILATGST----D-----KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----------------NETILASCCLGR 340 (424)
Q Consensus 287 ~~l~~g~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-----------------~~~~l~s~~~dg 340 (424)
+|++... . ...++|+-....+|+..+.....++..+.|+|- .+.++|.++.+
T Consensus 244 -llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~- 321 (434)
T KOG1009|consen 244 -LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN- 321 (434)
T ss_pred -EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-
Confidence 6766542 2 345677776667888888887888888888762 12245555554
Q ss_pred eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
.|.|||..+.. .+...-.-|-..|++++|+++|.. |+..|.||...+-.+....
T Consensus 322 svyvydtq~~~-------------P~~~v~nihy~~iTDiaws~dg~~-l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 322 SVYVYDTQTLE-------------PLAVVDNIHYSAITDIAWSDDGSV-LLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEecccccc-------------ceEEEeeeeeeeecceeecCCCcE-EEEeccCCceEEEEEcchh
Confidence 69999988632 223334557788999999999995 6666889987776665543
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2.2e-19 Score=168.25 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=181.0
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE 227 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 227 (424)
+.+.||++... ..+...+. -...|.++.|+|..+++++.|..+|.|.+||++.+..............|.
T Consensus 222 ~~~~vW~~~~p---------~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~ 291 (555)
T KOG1587|consen 222 GVLLVWSLKNP---------NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHS 291 (555)
T ss_pred ceEEEEecCCC---------CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCC
Confidence 47999999872 34444444 567899999999999999999999999999999876532222222345689
Q ss_pred cceeeEEeeCCCCc-EEEEEeCCCeEEEEECCCCCCCCCeeEe---c------ccCCCeeEEEecCCCCeEEEEEeCCCc
Q 014472 228 GVVEDVAWHLRHEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSV---V------AHQSEVNCLAFNPFNEWILATGSTDKT 297 (424)
Q Consensus 228 ~~v~~i~~~~~~~~-~~~s~~~dg~i~i~d~~~~~~~~~~~~~---~------~~~~~v~~i~~~~~~~~~l~~g~~dg~ 297 (424)
.+++.+.|..+... -|++++.||.|..|+++.-......... . .....+++++|.+..++.|+.|+.+|.
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~ 371 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK 371 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE
Confidence 99999999765433 2458889999999998764321111111 1 123468999999999999999999999
Q ss_pred EEEEEC---CCCC----CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEE
Q 014472 298 VKLFDL---RKIS----TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH 370 (424)
Q Consensus 298 i~iwd~---~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 370 (424)
|.--+. +... +....+..|.++|.++.++|.+..++++++ |.+++||...... .+++.+
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-------------~Pl~~~ 437 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-------------SPLLSL 437 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-------------Ccchhh
Confidence 877332 3212 234466778999999999999987777777 8899999877321 445556
Q ss_pred cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 014472 371 GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 371 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 413 (424)
..+...|++++|||..+.+++++..||.|.|||+.....++.-
T Consensus 438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 6677779999999999989999999999999999887665543
No 167
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.3e-19 Score=167.22 Aligned_cols=222 Identities=18% Similarity=0.297 Sum_probs=173.1
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
+...|.+++... ..|++|+.+++|.+|.+.. ......+....-++.+++++-+|. +++.||.|-.|
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps----------~~~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~v 120 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPS----------GEEDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAV 120 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCC----------CCccceeeeeeccceEEEEecCCc-EEEeecCceeE
Confidence 677788888654 2789999999999999987 333334555677899999999888 79999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc-----cCCCeeE
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-----HQSEVNC 278 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~ 278 (424)
++-++.+.. ....+.+|.++|.++.|+|.+. ++|+.+.||.|++||+..+.....+..+.. ....+..
T Consensus 121 K~~~~~D~s------~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 121 KLLNLDDSS------QEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR 193 (933)
T ss_pred EEEeccccc------hheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence 999998763 3566788999999999999986 778999999999999998765333222211 1456788
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec--CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
++|+|++.. |+....|+.|++|+... ......+. .+...+..++|+|.|. +||+++.||.|.|||..+...
T Consensus 194 ~aW~Pk~g~-la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~---- 266 (933)
T KOG1274|consen 194 LAWHPKGGT-LAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER---- 266 (933)
T ss_pred eeecCCCCe-EEeeccCCeEEEEccCC-ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh----
Confidence 999999885 66777899999999887 45555544 2344599999999996 899999999999999986311
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
......|.+++|.|+.+
T Consensus 267 --------------~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 267 --------------HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred --------------ccccceeEEEecCCCCC
Confidence 11234688888988876
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-18 Score=156.77 Aligned_cols=248 Identities=13% Similarity=0.195 Sum_probs=193.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+-.+.|-+++|++.++ |.+.+.+|.|.-||+.+ .++...+....+.|++++.+|.+. .++.|+.||.
T Consensus 67 ~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~----------lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv 133 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHT----------LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV 133 (691)
T ss_pred CCCCceeeEEEccCCe--EEeecCCceEEEEeccc----------CceeEEecCCCcceeEEEeCCccc-eEEeecCCce
Confidence 4567899999997554 66667799999999998 677778888889999999999887 6999999997
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe-----c-ccCCCe
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-----V-AHQSEV 276 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-----~-~~~~~v 276 (424)
+..++...+ .+.....+....+.|.+++|+|++.. +++|+.||.|++||...+.... +.+. . .-...|
T Consensus 134 l~~~s~~p~----~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iV 207 (691)
T KOG2048|consen 134 LYDFSIGPD----KITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIV 207 (691)
T ss_pred EEEEecCCc----eEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEE-EeeecccccccCCceEE
Confidence 777777544 22333445556789999999999864 4699999999999999877522 1111 1 123457
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.++.|-.++ .|++|...|+|.+||... +..++.+..|.+.|.+++..+++. .+++++.|+.|.-|.......+
T Consensus 208 WSv~~Lrd~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~--- 280 (691)
T KOG2048|consen 208 WSVLFLRDS--TIASGDSAGTVTFWDSIF-GTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSE--- 280 (691)
T ss_pred EEEEEeecC--cEEEecCCceEEEEcccC-cchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccc---
Confidence 888888665 599999999999999997 788999999999999999999986 6889999999988887765321
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.........|...|.+++..++ .+++||.|..+.+-....
T Consensus 281 -------wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 -------WVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -------eeeeccccCCcccceeeeeecc---eEEecceeeEEEEccccc
Confidence 1122233567777899888776 688999999888876655
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.7e-20 Score=149.56 Aligned_cols=251 Identities=17% Similarity=0.217 Sum_probs=183.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+|.+.|+++.|-.++. |.+|...|.|.+|.+.+ ......+. .|...|+.+.--|++ .|.+-+.|+
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt----------~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~ 77 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQT----------ERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDP 77 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeec----------CccchhhhhhccceeeceeecCCc--chhhcCCCc
Confidence 9999999999988764 88899999999999998 34444455 467788889888864 488999999
Q ss_pred cEEEEeCCCCCCC--------------Ccc----c---ce----------------------ee----eecCCcceeeEE
Q 014472 202 QICLWDINAAPKN--------------KSL----E---AM----------------------QI----FKVHEGVVEDVA 234 (424)
Q Consensus 202 ~i~vwd~~~~~~~--------------~~~----~---~~----------------------~~----~~~~~~~v~~i~ 234 (424)
.+.+|++...... ..+ + .+ .. -.+..+.+.+..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 9999998762110 000 0 00 00 001123344444
Q ss_pred eeC-C-CCcEEEEEeCCCeEEEEECCCCCC-------CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 235 WHL-R-HEYLFGSVGDDQYLLIWDLRTPSV-------SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 235 ~~~-~-~~~~~~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
+.- + ...++++|.++|.+.+||+..+.. .+.......|..+|.++.+.+.-.. =++|+.+..+..|.+..
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNH 236 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeecc
Confidence 322 2 234567888999999999988621 1223334568999999999875543 45777788899998865
Q ss_pred CCC---cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEe
Q 014472 306 IST---ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW 382 (424)
Q Consensus 306 ~~~---~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 382 (424)
... ....+...+-.|..+..-|+++ +||+++.|+.|+||..++. +.+.++.-|...|++++|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl--------------~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL--------------NPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC--------------CchhhhhhhhcceeEEEe
Confidence 211 1122333456789999999996 8999999999999999986 557778889999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEec
Q 014472 383 NPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 383 ~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
+|+.+ ++|+++.|++|.+|++
T Consensus 302 spd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCCCc-hhhhccCCceEEeeec
Confidence 99988 8999999999999986
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-19 Score=152.36 Aligned_cols=197 Identities=21% Similarity=0.312 Sum_probs=156.0
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC-CCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.++++...|.|++||..+++ .+..++++...++.++|... +++.+.+|+.||+|++||+|..... +...+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~ 114 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQ------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQ 114 (376)
T ss_pred eEEEEecCCeEEEEeccchh------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccC
Confidence 68889999999999998863 45667788999999999875 6778889999999999999987642 3334444
Q ss_pred cC-CCeeEEEecCCCCeEEEEEeC----CCcEEEEECCCCCCccee-ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 272 HQ-SEVNCLAFNPFNEWILATGST----DKTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 272 ~~-~~v~~i~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
+. .+..|++.+-.+. ++++|.. +-.+.+||+|+..+++.. ...|..-|+++.|+|..+.+|++|+.||.|.||
T Consensus 115 ~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 115 QSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 44 5777888776555 7888763 668999999997665554 457999999999999999999999999999999
Q ss_pred eCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
|+....++. . +.....|...|..+.|...+-..|.+-+......+|++..+.
T Consensus 194 D~~~d~EeD----------a-L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 194 DTKKDNEED----------A-LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred ecCCCcchh----------h-HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 998753321 2 222335667799999998883347777889999999999886
No 171
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.9e-18 Score=163.79 Aligned_cols=267 Identities=19% Similarity=0.227 Sum_probs=181.7
Q ss_pred CceeEEEecC-CCCcEEEEEecCCeEEEEeCCCCC-CCCCCCCCCCCcEE-EecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 126 GEVNRARYMP-QNPFLIATKTVSAEVYVFDYSKHP-SKPPLDGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~i~~~p-~~~~~latg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..|+.+.+-. ++..++.+|+.||.|+||+--... .+++.-..+..+.. +.+..+.-.-++|..... +|++++.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence 4566666644 445589999999999999865422 22211111111111 111222234567887665 5777666889
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC--eeEEE
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE--VNCLA 280 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i~ 280 (424)
|+|||.........+ ..+....|+++.-+-.+.+++++|..||.|++||.|.......+...+.|... |..+.
T Consensus 1189 IRIWDa~~E~~~~di-----P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADI-----PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred EEEEecccceeEeec-----ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 999999866432222 12345567777766666678999999999999999987655567777888877 99999
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCC-CCcceeecCCC--C-CEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKI-STALHTFDSHK--E-EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~--~-~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
+.+.|-.-|++|+.+|.|++||+|.. .....++..|. + ..+++..+++.+ ++|+|+. +.|+||++.........
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence 99877656999999999999999982 22233333333 3 599999999986 7888888 89999999753221100
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
....+ +....+.+.+++|||... ++|+|+.|..|.||....+..
T Consensus 1342 -------~n~~F-~~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1342 -------YNPGF-MGQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred -------cCccc-ccCcCCCcceeeecchhH-hhhhccCCceEEEeecCCcCC
Confidence 00001 111234579999999988 799999999999999877643
No 172
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.2e-19 Score=163.12 Aligned_cols=276 Identities=16% Similarity=0.264 Sum_probs=198.0
Q ss_pred cEEEEE-EeccCCceeEEEecCCC--CcEEEEEecCCeEEEEeCCCCCCCC----C------CC-CCCCCc---------
Q 014472 115 KVQIIQ-QINHDGEVNRARYMPQN--PFLIATKTVSAEVYVFDYSKHPSKP----P------LD-GACSPD--------- 171 (424)
Q Consensus 115 ~~~~~~-~~~h~~~v~~i~~~p~~--~~~latg~~dg~v~iwd~~~~~~~~----~------~~-~~~~~~--------- 171 (424)
++.... ..+|.+-|.+++|...+ ..+||+++.|..|+||.+.-..... + .. ......
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 444433 34799999999998754 4689999999999999986422111 0 00 000001
Q ss_pred -EEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcc-cceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 172 -LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSL-EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 172 -~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
..+.||.+-|+++.|+|.+. .|++++.|.++.+|..........- -.+....+.........|+|++. .+++-+..
T Consensus 260 eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~ 337 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRT 337 (764)
T ss_pred hhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC-EEEEeccc
Confidence 12348999999999999886 5999999999999988654321110 11222233455688999999986 45577889
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC-------Cc-------------
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS-------TA------------- 309 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~-------~~------------- 309 (424)
|..++|...............+|...|..++|+|.|++ |++.+.|-+-|+|-.-... +|
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 99999995544433344455789999999999999995 6677778777776322000 00
Q ss_pred --------------------------------------------------------------------------------
Q 014472 310 -------------------------------------------------------------------------------- 309 (424)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (424)
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence
Q ss_pred ---------------------ceeecCCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEeeCCCCCcccCCCccCCCC
Q 014472 310 ---------------------LHTFDSHKEEVFQVGWNPKNETILASCCLGR-----RLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 310 ---------------------~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
++.+-+|...|.+++.+|++. ++|+++... .|++|+..+...
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~----------- 564 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQ----------- 564 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhh-----------
Confidence 233446888999999999995 899887643 499999987643
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
...+.+|.-.|+.++|+|+++ +|+++|.|.++.+|.......
T Consensus 565 ---~~~L~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 565 ---VQELEGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred ---hheecccceEEEEEEECCCCc-EEEEeecCceEEeeeeecccc
Confidence 345689999999999999999 588899999999999976643
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.7e-17 Score=151.76 Aligned_cols=268 Identities=11% Similarity=0.144 Sum_probs=173.4
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
++++.++.+.+.+....++++|+++.+++++..++.|.+|++... +........ ...+....++++|+++.
T Consensus 23 g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-------g~l~~~~~~-~~~~~p~~i~~~~~g~~- 93 (330)
T PRK11028 23 GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-------GALTFAAES-PLPGSPTHISTDHQGRF- 93 (330)
T ss_pred CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-------CceEEeeee-cCCCCceEEEECCCCCE-
Confidence 356667777777888899999999865566566899999998631 111111111 12335678999999984
Q ss_pred EEEEe-CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCC----eeE
Q 014472 194 LLSGS-DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKP----VQS 268 (424)
Q Consensus 194 l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~----~~~ 268 (424)
|++++ .++.|.+|+++...... ..+.... +...+..++++|+++.++++...++.|.+||+.+.....+ ...
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~--~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPV--APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCC--Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 55544 58999999996432111 1112122 2345677899999998888888889999999986432211 011
Q ss_pred ecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C--CcceeecCC------CCCEEEEEEcCCCCcEEEEEeCC
Q 014472 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S--TALHTFDSH------KEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 269 ~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~--~~~~~~~~~------~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
. ........++|+|++++++++...++.|.+||+... + ..+..+..+ ......+.++|+++.++++...+
T Consensus 171 ~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 171 T-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred c-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence 1 123456789999999965555555899999999742 1 223333211 12334688999997545444557
Q ss_pred CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
+.|.+|++...... ..++..... ......++++|+|++++++...++.|.+|++.
T Consensus 250 ~~I~v~~i~~~~~~----------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 250 SLISVFSVSEDGSV----------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CeEEEEEEeCCCCe----------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 89999999653211 012222111 12467899999999766666669999999885
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=139.52 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=176.3
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
.|.+-+++|.++ +|++|..+|.|.++.+.+..+.........++...++|.++++.++|.. . +|++|+ ||.|+-|
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~-~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--D-FLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--h-heeecc-CceEEEe
Confidence 566778999876 8999999999999999875544433333455666789999999999983 2 577665 5999999
Q ss_pred eCCCCCCCCccccee----eee---cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 207 DINAAPKNKSLEAMQ----IFK---VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 207 d~~~~~~~~~~~~~~----~~~---~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
.-+........+.+- .++ ..--.|+++...|..+.+| .++.|+.++-||+.+++. ...+++|++.|.++
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---QREYRGHTDYVHSV 162 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE---EEEEcCCcceeeee
Confidence 766543311111110 011 1123688999999888777 555899999999999874 67789999999999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC---------C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---------H-KEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.--..+. .+++|+.||++++||.++ .+.+..+.. | ...|.+++-+. . .|++|+ ...+.+|.++.
T Consensus 163 v~R~~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~~e--d-WlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 163 VGRNANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--D-WLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred eecccCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEeccC--c-eEEecC-CCceeEEeccC
Confidence 9844444 488999999999999998 666655542 1 23566666653 2 454444 55699999998
Q ss_pred CCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 350 IDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
... .+++.+.+| +..+.|..+ ++++++..+.|.-|.+..
T Consensus 237 se~------------t~vfpipa~---v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 237 SES------------TCVFPIPAR---VHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CCc------------eEEEecccc---eeEeeeecc---eEEEeccccceeeeeecc
Confidence 543 556666654 667777654 677888888999998864
No 175
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=4.6e-18 Score=158.72 Aligned_cols=265 Identities=17% Similarity=0.229 Sum_probs=202.3
Q ss_pred cEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 115 KVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
+........|...|.-+.- -|. .++++..++.+.||+......+. ..+ ...+....+.|++|.--+.--+.+
T Consensus 104 k~i~~~~~~~~a~v~~l~~--fGe-~lia~d~~~~l~vw~~s~~~~e~----~l~-~~~~~~~~~~Ital~HP~TYLNKI 175 (910)
T KOG1539|consen 104 KHIRHTTLLHGAKVHLLLP--FGE-HLIAVDISNILFVWKTSSIQEEL----YLQ-STFLKVEGDFITALLHPSTYLNKI 175 (910)
T ss_pred ceEEEEeccccceEEEEee--ecc-eEEEEEccCcEEEEEeccccccc----ccc-ceeeeccCCceeeEecchhheeeE
Confidence 3344444566666666553 465 45556889999999988731110 011 222222223377776433333358
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
+.|+.+|.+.+|+++++ +.+..++++...|+++.-+|-=. ++|.|..+|+|.+++++.++. +..++...+
T Consensus 176 vvGs~~G~lql~Nvrt~------K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dki---l~sFk~d~g 245 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTG------KVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKI---LMSFKQDWG 245 (910)
T ss_pred EEeecCCcEEEEEeccC------cEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcE---EEEEEcccc
Confidence 99999999999999988 45778888999999999888754 789999999999999999775 666664469
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
.|++++|..+|+.++|+|+..|.+.+||+............|.+.|+.+.|.|..+ ++++++.|..+++|=..++
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~---- 320 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSG---- 320 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCC----
Confidence 99999999999999999999999999999983333344458999999999999886 8999999999999877653
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
++.+++++.-.||..+..+++|.-...+++.+++.|++++.+++....
T Consensus 321 ------dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 321 ------DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred ------CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 445688999999999999999984433489999999999988876543
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=3.5e-19 Score=161.38 Aligned_cols=241 Identities=15% Similarity=0.257 Sum_probs=177.3
Q ss_pred EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-Ccccceee
Q 014472 144 KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQI 222 (424)
Q Consensus 144 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~ 222 (424)
.+.-|.|-||+++.....+. ..+-.+ .....|+.+.|.|.....|++++.||.|++|.+..+... ....+...
T Consensus 599 ~g~gG~iai~el~~PGrLPD-----gv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~ 672 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD-----GVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI 672 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc-----cccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee
Confidence 45578999999987433331 011111 245679999999998889999999999999999876543 34456677
Q ss_pred eecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014472 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 223 ~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 302 (424)
+..|...|+++.|+|-...++++++.|.+|++||+++... ...+.+|.+.|..++|+|+|+ .+|+.+.||+|++|.
T Consensus 673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYE 748 (1012)
T ss_pred eecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeC
Confidence 8899999999999999888999999999999999999764 567789999999999999998 699999999999999
Q ss_pred CCCCCCcceeecCCC-CCEEEEEEcCCCCcEEEEEeCC----CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCc
Q 014472 303 LRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLG----RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377 (424)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 377 (424)
.|+..++++.-.+.. ..-..+.|.-+|.. +++.+.| ..|.+||..+.... +.....+..-. .+
T Consensus 749 Prs~e~pv~Eg~gpvgtRgARi~wacdgr~-viv~Gfdk~SeRQv~~Y~Aq~l~~~----------pl~t~~lDvap-s~ 816 (1012)
T KOG1445|consen 749 PRSREQPVYEGKGPVGTRGARILWACDGRI-VIVVGFDKSSERQVQMYDAQTLDLR----------PLYTQVLDVAP-SP 816 (1012)
T ss_pred CCCCCCccccCCCCccCcceeEEEEecCcE-EEEecccccchhhhhhhhhhhccCC----------cceeeeecccC-cc
Confidence 998777776655432 34467889999975 4444444 45778887654210 01111111111 11
Q ss_pred ceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 378 SDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 378 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.--.+.+|...++++|-.|..|.+|.+-.
T Consensus 817 LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 817 LVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccccCCCceEEEecCCCceEEEEEecC
Confidence 22235667777888998999999998754
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=7.2e-18 Score=141.11 Aligned_cols=213 Identities=16% Similarity=0.193 Sum_probs=170.2
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
-.++|+|.+|+++.. .+|++..+..|.||..... ..+++..++..|...|++|+|+|..+ .|++|+.|..-
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~-------~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGA-------DLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCC-------CCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCc
Confidence 357999999999887 7999999999999998772 22777889999999999999999887 69999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC-CeeEecccCCCeeEEEec
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~ 282 (424)
+||....+ ...++...+..+...++++.|+|.++ .||+|+.-..|.||-.......- ..+.-+.+.+.|++++|+
T Consensus 80 yVw~~~~~---~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 80 YVWTQPSG---GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred cccccCCC---CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeecc
Confidence 99998543 34455566677899999999999975 78899999999999887755321 112223567889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECC-----CC------------CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 283 PFNEWILATGSTDKTVKLFDLR-----KI------------STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~-----~~------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
|++- +|++|+.|+..+||..- .. +..+..+....+.|..+.|+|+|. .|+-.+.|..+.+-
T Consensus 156 pnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 156 PNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFV 233 (361)
T ss_pred CCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEe
Confidence 9776 89999999999998642 10 122344445578999999999996 68899999999999
Q ss_pred eCCCCC
Q 014472 346 DLSRID 351 (424)
Q Consensus 346 d~~~~~ 351 (424)
|.....
T Consensus 234 da~~p~ 239 (361)
T KOG1523|consen 234 DAAGPS 239 (361)
T ss_pred ecCCCc
Confidence 887643
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=155.17 Aligned_cols=213 Identities=16% Similarity=0.201 Sum_probs=165.1
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
..++.+++||.+.|.+-.. +....+.+|.+.+.+-.|+|+|.+ |++++.||.|++|.-...-
T Consensus 76 d~~~i~s~DGkf~il~k~~-----------rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~iKiWSrsGML------ 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-----------RVERSISAHAAAISSGRWSPDGAG-LLTAGEDGVIKIWSRSGML------ 137 (737)
T ss_pred ceEEEEcCCceEEEecccc-----------hhhhhhhhhhhhhhhcccCCCCce-eeeecCCceEEEEeccchH------
Confidence 3677788999999988654 444567889999999999999996 9999999999999864331
Q ss_pred ceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014472 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 219 ~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i 298 (424)
...+.....+|.|++|.|+...++.+. .+.+.|=-+.... .+...++|.+.|.++.|++.+. ++++|+.|-..
T Consensus 138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kf 210 (737)
T KOG1524|consen 138 -RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRF 210 (737)
T ss_pred -HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc---ceeEEeccCcEEEEeecCcccc-ceeecCCceeE
Confidence 112233567999999999998887553 4566666665433 3567789999999999999887 89999999999
Q ss_pred EEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
++||-. +.++..-..|..+|++++|.|+. +++.++.. ++++=. ...+.|.
T Consensus 211 KvWD~~--G~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R~~~-------------------------p~~GSif 260 (737)
T KOG1524|consen 211 KIWDAQ--GANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TARFSS-------------------------PRVGSIF 260 (737)
T ss_pred Eeeccc--CcccccCChhccceeeeeecccc--ceeeeeee-eeeecC-------------------------CCccceE
Confidence 999976 68888889999999999999993 46666543 344211 2245699
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 379 DFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.++|++||. .+++|...|.+.+=-+-+.
T Consensus 261 nlsWS~DGT-Q~a~gt~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 261 NLSWSADGT-QATCGTSTGQLIVAYAIEQ 288 (737)
T ss_pred EEEEcCCCc-eeeccccCceEEEeeeehh
Confidence 999999999 6888888887766444433
No 179
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.81 E-value=6.5e-21 Score=129.81 Aligned_cols=72 Identities=53% Similarity=0.921 Sum_probs=54.2
Q ss_pred HHHHHhHHhcChhHHHHhhhcCCCCCccEEEEccCCC-CCCCCCCceEEEEEeecCCCCCCCeEEEEEEEcCC
Q 014472 18 NEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRE-EPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPL 89 (424)
Q Consensus 18 ~~~~~~wk~~~~~~y~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~gt~~~~~~~~~i~i~~~~~~~ 89 (424)
+|+|++||+|+|++||+++++.++||||||||+|+.. +..+..+..+++++||+++++++|+|+|+++.+|.
T Consensus 1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 5789999999999999999999999999999999988 55443456899999999999999999999998873
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=155.48 Aligned_cols=219 Identities=22% Similarity=0.373 Sum_probs=165.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE-ecCCCCeeeEEecCCC-CceEEEEeC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL-RGHSTEGYGLSWSKFK-EGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~ 199 (424)
.+|++.|+|+.|+.+|. +||+|+.|-.+.|||.-. .++...+ .+|.+.|.++.|-|.. ..++++|+.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFE----------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchh----------cceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 48999999999999997 999999999999999875 3444433 5899999999999864 336889999
Q ss_pred CCcEEEEeCCCCCCC----CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-------E
Q 014472 200 DAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-------S 268 (424)
Q Consensus 200 dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-------~ 268 (424)
|..|+++|+...+.. ........+..|...|-.|+-.|.+++.|-+++.||+|+-+|+|.+....+-. .
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 999999999853221 22234556778999999999999999999999999999999999754322211 1
Q ss_pred ecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-----------------cceeec-CCC-----------CC
Q 014472 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-----------------ALHTFD-SHK-----------EE 319 (424)
Q Consensus 269 ~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------------~~~~~~-~~~-----------~~ 319 (424)
+...--...|+..+|..+++||+|+.|-..++||.|...+ ++.-+. +|- ..
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence 1112235679999999999999999999999999653211 122221 121 12
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 320 VFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
++-+.|+|+|.-+|++-+.+ .|.++|+.....
T Consensus 276 ~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred eEEEEECCCCcEEEEeeCCe-EEEEEeecCCCC
Confidence 56788999998777776655 599999987653
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=154.45 Aligned_cols=229 Identities=19% Similarity=0.251 Sum_probs=168.1
Q ss_pred EEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC-CCcEEEEEeCCC
Q 014472 172 LRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEYLFGSVGDDQ 250 (424)
Q Consensus 172 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~s~~~dg 250 (424)
..+.||.+-|.+|+|+.+|. +|++||.|-.+.|||.-..+. ....-.+|...|.++.|-|. +..++++|..|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kl-----lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKL-----LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcce-----eeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 46889999999999999998 899999999999999974422 12234589999999999984 445788999999
Q ss_pred eEEEEECCCCC-------CCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee---------c
Q 014472 251 YLLIWDLRTPS-------VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF---------D 314 (424)
Q Consensus 251 ~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------~ 314 (424)
.|++||+...+ ...+...+..|...|..|+..|.+++.|.+++.||+|+-+|+|.+..+-... .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 99999998522 1234455577899999999999998999999999999999999744332221 1
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC-CCC---eeeEE-EcCCC-----------CCcc
Q 014472 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED-GPP---ELLFI-HGGHT-----------SKIS 378 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~---~~~~~-~~~h~-----------~~v~ 378 (424)
..--...++..+|..+.+|+.|+.|-..++||.+...........-. .|+ .++.- ..+|. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 11235688999999999999999999999999654433222111111 111 11111 11221 1256
Q ss_pred eEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 379 DFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
-+.|+|+|.-+|++-+.+ .|+++++..+
T Consensus 278 ~vtfnpNGtElLvs~~gE-hVYlfdvn~~ 305 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGE-HVYLFDVNED 305 (758)
T ss_pred EEEECCCCcEEEEeeCCe-EEEEEeecCC
Confidence 688999998788887644 6999999876
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=8.7e-18 Score=153.26 Aligned_cols=247 Identities=15% Similarity=0.187 Sum_probs=183.2
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
.|+.++|-|+|..+++++ +..+.|||.+. .....++++|++.|++++|+.+|. ++++|+.|..|.+|
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~nd----------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSD----------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCC----------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence 899999999999777665 45899999987 566788999999999999999998 79999999999999
Q ss_pred eCCCCCCC-----Ccccce------------------------eeee--cCCcceeeEEeeCCCCcEEEEEeCCCeEEEE
Q 014472 207 DINAAPKN-----KSLEAM------------------------QIFK--VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 207 d~~~~~~~-----~~~~~~------------------------~~~~--~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
+-.-.... ..++++ +... .....+.+++|..+|. +++.|-.+|+|.+-
T Consensus 81 ~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 81 TSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIR 159 (1081)
T ss_pred cccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEee
Confidence 86533211 111100 0001 1234677888888886 56789999999987
Q ss_pred ECCCCCCCCCeeEecccCCCeeEEEecCCCC----eEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCc
Q 014472 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE----WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 331 (424)
+-.. +....+....+..++|.+|+|+|... .++++.....++.+|.+.. +.+..-..-+-...|+.+.++|+
T Consensus 160 Nk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGE- 235 (1081)
T KOG1538|consen 160 NKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGE- 235 (1081)
T ss_pred cCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCc-
Confidence 5433 32233444455778999999999632 3678888888888888863 33433333344557899999998
Q ss_pred EEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+++.|+.|+.+++|.-.. ..+.+.......|+.++..|+++ .++.|+.||+|.-|++...
T Consensus 236 y~LiGGsdk~L~~fTR~G---------------vrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDG---------------VRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEccCCCceEEEeecC---------------eEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHh
Confidence 577888899999997653 44555556677899999999999 5889999999999988654
No 183
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.2e-16 Score=136.42 Aligned_cols=242 Identities=13% Similarity=0.201 Sum_probs=171.4
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC--cEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QIC 204 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~ 204 (424)
.++.+.|+.+.. +|..|+.|| .++|+.... ............|.-+-|+. .++|..+.+. .++
T Consensus 7 ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~----------~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 7 TINFIGFNQDST-LLSVGSKDG-YKIFSCSPF----------EKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLK 71 (391)
T ss_pred ceeeeeecccee-EEEccCCCc-eeEEecCch----------HHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEE
Confidence 455666887765 899999887 678887751 11111111222344555653 2566555543 488
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
+.+++.... +..+. ...+|.++.++.+ .++ ++-. ..|+|||+++.+....+.....+...+.++++++.
T Consensus 72 v~~~Kk~~~------ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 72 VVHFKKKTT------ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA 140 (391)
T ss_pred EEEcccCce------EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCC
Confidence 888875532 22222 4668999998754 344 4433 44999999998775555555567777888888887
Q ss_pred CCeEEEEEeC-CCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEeeCCCCCcccCCCccCCC
Q 014472 285 NEWILATGST-DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQTPEDAEDG 362 (424)
Q Consensus 285 ~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~ 362 (424)
+.++..-++. .|.|.+||+.+ -+++..+.+|++++.+++|+++|. +||+++..|+ ||+|.+..+
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G------------ 206 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG------------ 206 (391)
T ss_pred CceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc------------
Confidence 7754333433 58999999998 688899999999999999999995 8999999987 789999876
Q ss_pred CCeeeEEEcCC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 363 PPELLFIHGGH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 363 ~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
+.++.++.. ...|.+++|+|+++ +|++.|..++|+||++.+...+.
T Consensus 207 --~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~ 254 (391)
T KOG2110|consen 207 --QKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNP 254 (391)
T ss_pred --cEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCC
Confidence 444444432 23588999999999 68888999999999999887433
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=2.1e-16 Score=149.42 Aligned_cols=254 Identities=24% Similarity=0.453 Sum_probs=195.3
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC-CCeeeEEe-cCCCCceEEEE
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS-TEGYGLSW-SKFKEGHLLSG 197 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~~~~l~s~ 197 (424)
....|...+.++.+.+.+. .++.++.++.+.+|+..... .....+..+. ..+..+.+ ++++..+++..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCc---------eeEEEEeccCCCceeeEEEECCCcceEEecc
Confidence 3567899999999999887 67777789999999998721 1344555533 36777777 67666345554
Q ss_pred eC-CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC-CCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 198 SD-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 198 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+. |+.+.+|++... ......+..|...|..++|+|++. .+++++. |+.+++|++.... .+..+..|...
T Consensus 130 ~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 200 (466)
T COG2319 130 SSLDGTVKLWDLSTP-----GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK---PLSTLAGHTDP 200 (466)
T ss_pred CCCCccEEEEEecCC-----CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc---eEEeeccCCCc
Confidence 44 999999999761 134566778999999999999998 4456664 9999999999844 46677779999
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-eecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|.+++|+|++..++++++.|+.|++||.+. +..+. .+..|.... -..|+|++ .++++++.|+.+++|++.....
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-- 275 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS-- 275 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc--
Confidence 999999998874565668999999999885 56666 688888775 44899998 4788999999999999987532
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.+....+|...|..+.|+|++. .+++++.|+.+++|+......
T Consensus 276 -----------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 276 -----------LLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred -----------EEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce
Confidence 1222367888999999999888 455588889999998877643
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=167.49 Aligned_cols=247 Identities=21% Similarity=0.295 Sum_probs=191.7
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+.++|..+|+|+.|...|. ++++|+.|..|+||...+ ..+.....||.+.|+.++.+..+. ++++++.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et----------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~ 252 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMET----------ARCLASCRGHSGDITDLAVSSNNT-MIAAASN 252 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccc----------hhhhccCCCCccccchhccchhhh-hhhhccc
Confidence 3457999999999999886 899999999999999777 566778999999999999988665 7999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe-cccCCCeeE
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNC 278 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~ 278 (424)
|..|++|.+..+ .++..+.+|++.|++|+|+|-. +.+.||++++||.+-.....+.... ......+.+
T Consensus 253 D~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 253 DKVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred CceEEEEecCCC------chHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 999999999877 4567788999999999999853 7789999999999821100000001 112356777
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
+.|...+. -++||+.|+.-..|.+... ..+...+.-+.++.+-..+.+++-.+-.+++|++..+
T Consensus 322 ~~~~~~~~-~f~Tgs~d~ea~n~e~~~l-------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-------- 385 (1113)
T KOG0644|consen 322 ILFENNGD-RFLTGSRDGEARNHEFEQL-------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-------- 385 (1113)
T ss_pred eecccccc-ccccccCCcccccchhhHh-------hhhccceEEEeccccccccceeeeeeeEeeeeecccc--------
Confidence 88887777 4899999998888765431 1223333333333333346777777888999999886
Q ss_pred cCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 359 AEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 359 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
.+.....+|...++.+.++|-.+.+..+++.||...|||+..+.-..
T Consensus 386 ------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 386 ------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 55667789999999999999988788899999999999999886543
No 186
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.2e-18 Score=140.12 Aligned_cols=199 Identities=12% Similarity=0.210 Sum_probs=151.0
Q ss_pred eeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC
Q 014472 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
..++.|++.|. +||+|+.||.|.|||+.+.. ..+.+.+|..+|.+++|+++|+.+ ++++.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~------iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR------IARMLSAHVRPITSLCWSRDGRKL-LTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc------hhhhhhccccceeEEEecCCCCEe-eeecCCceeEEEeccCC
Confidence 68999999998 89999999999999998763 345577899999999999999855 59999999999999998
Q ss_pred CCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC---CCCCEEEEEEcCCCCcEEEEEe
Q 014472 261 SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS---HKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~l~s~~ 337 (424)
.. ++.+. ..++|....|+|...+.+++.-.+..-.+-++..+...+..... .+....+..|.+.|+ ++++|.
T Consensus 98 s~---l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGt 172 (405)
T KOG1273|consen 98 SP---LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGT 172 (405)
T ss_pred Cc---eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEec
Confidence 75 44443 47899999999988776666666666666666542221111111 111223346888886 788999
Q ss_pred CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..|.+.++|..+. +++..++-.. ..|..+.++..|+ +|+.-+.|..|+.|+++.-
T Consensus 173 sKGkllv~~a~t~--------------e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 173 SKGKLLVYDAETL--------------ECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDI 228 (405)
T ss_pred CcceEEEEecchh--------------eeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhh
Confidence 9999999999885 3343333333 5688899999999 6778888999999999753
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.6e-18 Score=151.25 Aligned_cols=271 Identities=20% Similarity=0.311 Sum_probs=196.7
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCCeeeEEecCCC-CceEEEEeC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFK-EGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~~~l~s~~~ 199 (424)
-+|.+.|+.|.|+..|. .+++|+.|..|.+||... ..+.. -..+|...|..-.|.|.. ..-+++++.
T Consensus 139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~----------~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVS----------GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred cCCCCccceeeecccCc-eeeccCccceEEeehhhc----------cCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 36999999999999887 899999999999999987 23333 345798899888898863 334999999
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC---Ce
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS---EV 276 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~v 276 (424)
||.+++=.+....... ....+..|.++|..++.-|+.++-|.+++.|+.+.-+|+++......+.....+.. ..
T Consensus 208 dgqvr~s~i~~t~~~e---~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVE---NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred cCceeeeeecccccee---cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence 9999998775443222 22345569999999999999999999999999999999998765333333334444 67
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc-----ceeecC------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-----LHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----~~~~~~------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
++|+.+|.+.+.+|+|+.|-.+++||.|..... +..+.. ..-.|++++|+.++.-+|++-. |-.|.+|
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF 363 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLF 363 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-ccceEEe
Confidence 899999999999999999999999999864322 333322 2357999999987766676655 4458888
Q ss_pred eCCCCCcccCCCccCCCCCeeeEEEcCCCC--CcceEEe-CCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTS--KISDFSW-NPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.-..+. -..+............+++||.. .|..+-| -|... ++++|++-|.|.||+-.++.+
T Consensus 364 ~~~~~~-G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 364 NKSMGD-GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred cccccc-CCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHH
Confidence 433221 11111101011122334778864 4666654 67778 699999999999999988743
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.3e-17 Score=142.17 Aligned_cols=198 Identities=16% Similarity=0.276 Sum_probs=148.5
Q ss_pred eeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCC
Q 014472 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
..++|+.+|. .|++++.||++|||+.... ..+.....|...|.++.|+|++. ++++.+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~------~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSM------LTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcc------hhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc
Confidence 6899999888 7999999999999996443 23444556899999999999997 56788888 89999999975
Q ss_pred CCCCeeEec--ccCCCeeEEEecCCC---Ce-EEEEEeCCCcEEEEECCCCCC----cceeecCCCCCEEEEEEcCCCCc
Q 014472 262 VSKPVQSVV--AHQSEVNCLAFNPFN---EW-ILATGSTDKTVKLFDLRKIST----ALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 262 ~~~~~~~~~--~~~~~v~~i~~~~~~---~~-~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~ 331 (424)
. +.... ..+.....+.|..++ .. +++.-..-+.|+.||+..... +..+.......|++++.+++|+
T Consensus 219 ~---~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk- 294 (398)
T KOG0771|consen 219 A---LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK- 294 (398)
T ss_pred h---hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-
Confidence 3 33222 223345566676655 22 333333456777777754333 2333333356899999999996
Q ss_pred EEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 332 ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
++|.|+.||.|.|++....+ .+.+....|...|+.+.|+|+.++ +++.+.|....|..+.-
T Consensus 295 f~AlGT~dGsVai~~~~~lq-------------~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQ-------------RLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeccCCcEEEEEeceee-------------eeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence 89999999999999998764 455666789999999999999995 78889999999988865
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-16 Score=148.60 Aligned_cols=267 Identities=15% Similarity=0.202 Sum_probs=183.7
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|.-.+++.+++|.+. ++|+|..||.|.+|.--... ........+.-|..+|.+++|+++|. +|++|+..|.
T Consensus 203 ~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~V 274 (792)
T KOG1963|consen 203 HHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGV 274 (792)
T ss_pred hhcccceeEEeccccc-eEEEeccCCcEEEEeccccc------cccccceEEEecccccceeEEecCCc-eEeecccceE
Confidence 4777799999999886 89999999999999754411 12233456777999999999999998 7999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc--------cCC
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA--------HQS 274 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~ 274 (424)
+.+|.+.++.. +-+..-.++|..+.++|++. +++....|..|.+....+......+..+.. ..+
T Consensus 275 Lv~Wq~~T~~k-------qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 275 LVLWQLETGKK-------QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred EEEEeecCCCc-------ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 99999988752 12334578999999999987 556778899999987754332212221111 133
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc---------------------------------------------
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------------------------------------- 309 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--------------------------------------------- 309 (424)
-.+.++++|.-+ .++-.+..|.|.+||+-+....
T Consensus 347 l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 347 LTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF 425 (792)
T ss_pred cceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence 456667777333 3555566677777776431100
Q ss_pred ----------------------ceeecCCCCCEEEEEEcCCCCc-EEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCee
Q 014472 310 ----------------------LHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 310 ----------------------~~~~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
......|+..+...++.+..+. .+++++.||.++||-+.......... ....+
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~----s~W~c 501 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS----SNWTC 501 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc----cceEE
Confidence 0111246666666666544333 78899999999999996544332221 12244
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC-CCCCCC
Q 014472 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE-NIYHDE 412 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~ 412 (424)
.....-|..+++..+|+.||. +++.+.++.|.+||..+ ..+...
T Consensus 502 ~~i~sy~k~~i~a~~fs~dGs--lla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 502 KAIGSYHKTPITALCFSQDGS--LLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred eeeeccccCcccchhhcCCCc--EEEEecCCEEEEecCCChhhhhcc
Confidence 444445888999999999998 44557899999999998 544433
No 190
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.78 E-value=5.7e-17 Score=134.24 Aligned_cols=260 Identities=18% Similarity=0.205 Sum_probs=185.8
Q ss_pred CceeEEEecC---CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 126 GEVNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~i~~~p---~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..++.+.|.- ++...++-+..+|.|.+|......+... ..++....-......++.|++.+.. ++++..+|.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~----L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~ 144 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH----LRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGS 144 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee----ecccchhhhhheeeeEEEeeccCce-EEEEcCCCc
Confidence 4566677753 3333667778889999999876322111 1111111111113568899998884 888889999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
+.+-+.... .++..+.++.|.-+++...|+...++++.+|++|+.+..||+|.+.. ......+.|...|.+|.-+
T Consensus 145 ~~~v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss 219 (339)
T KOG0280|consen 145 ISGVYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIYSS 219 (339)
T ss_pred EEEEeccee----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEecC
Confidence 986554332 23445568889999999999999999999999999999999995542 2233356789999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCc-EEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
|..++.++||++|-.|++||.|+.++|+..-.. .+.|+.+.++|.-.. +|+++-..| .+|-+......+.
T Consensus 220 ~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~------- 290 (339)
T KOG0280|consen 220 PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEF------- 290 (339)
T ss_pred CCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccch-------
Confidence 988889999999999999999998998876654 589999999996543 455555555 8888887654321
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEE-EEecCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQ-IWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~-iw~~~~~ 407 (424)
...+..+..|.+-.+.-.|..... +|+|++ .|+.++ +|-.-++
T Consensus 291 --~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 291 --QIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred --heeeeccccccceeeccccccccc-eeeeeeccccceeeeeeeccC
Confidence 135666778888888888855544 678765 677755 8865554
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.4e-17 Score=154.33 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=179.2
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCCeeeEEecC-CCCceEEEEeCCC
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSK-FKEGHLLSGSDDA 201 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~l~s~~~dg 201 (424)
.+...+.|+|-.+ .++++...-.|+|||.... .....+.. ....|+.+.+-. +...++++|+.||
T Consensus 1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~----------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEKG----------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred CCCceeeecCCCc-eeEEcCCcceEEEEecccC----------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 3567788999877 6777776779999999872 22222222 234678888754 3445899999999
Q ss_pred cEEEEeCCCCCCCCcccceeeeec-------CCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe-cccC
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQ 273 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~ 273 (424)
.|+||+--.... ...+.+..+.+ ..+.=.-+.|.....+++ ++|+-..|+|||...... +..+ .+..
T Consensus 1134 vIRIwk~y~~~~-~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~---~~diP~~s~ 1208 (1387)
T KOG1517|consen 1134 VIRIWKDYADKW-KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQV---VADIPYGSS 1208 (1387)
T ss_pred eEEEeccccccc-CCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEeccccee---EeecccCCC
Confidence 999997543321 11111111111 111113457877777776 555578999999987654 2222 2345
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC--cceeecCCCCC--EEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST--ALHTFDSHKEE--VFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..|+++.-+..+.+++++|..||.|++||.|.... .+...+.|+.. |..+.+.+.|-.-|++|+.||.|.+||++.
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 67888877666656899999999999999997433 67788888887 999999997755599999999999999997
Q ss_pred CCcccCCCccCCCCCeeeEEEcCC---CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q 014472 350 IDEEQTPEDAEDGPPELLFIHGGH---TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDED 413 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 413 (424)
... +.......| .+.++++..|++.+ ++|||+. +.|+||++....+....
T Consensus 1289 ~~~------------e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1289 SSK------------ETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred Ccc------------cccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccc
Confidence 421 111222222 22489999999999 8999987 99999999987665433
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=6e-18 Score=145.80 Aligned_cols=213 Identities=21% Similarity=0.323 Sum_probs=160.4
Q ss_pred CCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC---cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEE
Q 014472 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK---SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~ 253 (424)
...++.++.|.++..+.|+||+.|..|++|-++...... .+..+..+..|...|+++.|+|+|. ++|+|+++|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 345799999999877789999999999999998765443 5566677888999999999999996 789999999999
Q ss_pred EEECC--------C-----CCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCE
Q 014472 254 IWDLR--------T-----PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEV 320 (424)
Q Consensus 254 i~d~~--------~-----~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v 320 (424)
+|-.. + .+.......+.+|...|..++|+|++. ++++|+.|..+++||++. +.....+..|..-+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYV 168 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc-ceeEeecccccccc
Confidence 99766 2 111223345577999999999999998 699999999999999998 88999999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC------cc-CCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEE
Q 014472 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE------DA-EDGPPELLFIHG--GHTSKISDFSWNPCEDWVIS 391 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~-~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~ 391 (424)
..++|.|.++ ++++-+.|...+.+.+...+..+... .. ..........+. .-..-...++|+|+|. +++
T Consensus 169 qgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~-llv 246 (434)
T KOG1009|consen 169 QGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS-LLV 246 (434)
T ss_pred ceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc-EEE
Confidence 9999999986 68888888877777665433221111 00 011112222111 1123356789999999 676
Q ss_pred EEe
Q 014472 392 SVA 394 (424)
Q Consensus 392 s~~ 394 (424)
+.+
T Consensus 247 tPa 249 (434)
T KOG1009|consen 247 TPA 249 (434)
T ss_pred ccc
Confidence 643
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-17 Score=156.17 Aligned_cols=285 Identities=12% Similarity=0.192 Sum_probs=188.0
Q ss_pred EEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEE
Q 014472 116 VQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 116 ~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 195 (424)
..+.....|...|..++.++....++++|+.||+|++|+..+..... +..+...++..-...+.++...+.+. .+|
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~~~~~-~~A 1114 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMCGNGD-QFA 1114 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEeccCCC-eEE
Confidence 34455667999999999999876699999999999999998743322 22333344444567888999988777 699
Q ss_pred EEeCCCcEEEEeCCCCCCC-CcccceeeeecC-CcceeeE-EeeCCCC-cEEEEEeCCCeEEEEECCCCCCCCCeeEecc
Q 014472 196 SGSDDAQICLWDINAAPKN-KSLEAMQIFKVH-EGVVEDV-AWHLRHE-YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~-~~~v~~i-~~~~~~~-~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.++.||.|++.+++..... ...........+ .+.+.++ ++..... .+++.+..-+.|..||++.......++. ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-Cc
Confidence 9999999999999863111 111111222222 2333333 3433333 3777888999999999998654322222 22
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCCCCEEEEEEcCCCC--cEEEEEe--CCCeEEEee
Q 014472 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWNPKNE--TILASCC--LGRRLMVWD 346 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~~l~s~~--~dg~i~iwd 346 (424)
..+.|++++.+|.+. .+++|+..|.+.+||+|= +.++..+. .+..++..+..+|..+ ...++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 347899999999888 599999999999999996 66666654 4557888888887554 4444444 467899999
Q ss_pred CCCCCcccCCCccCCCCCeeeEEEc------CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 347 LSRIDEEQTPEDAEDGPPELLFIHG------GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+.++.+.+........ +.+-.... .+.-......+..-+. ++.+|+.|..|+.||......
T Consensus 1272 ~~~g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGA-PILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cccCcceEEEEcCCCC-cchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCccc
Confidence 9998665543322111 11110000 1111222233333344 789999999999999987643
No 194
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.9e-17 Score=141.83 Aligned_cols=206 Identities=11% Similarity=0.200 Sum_probs=160.9
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
.+.|+++.|+|..+ +|++|+.||+++||.+..... ..++.+.--..+|.+..|.|+|...+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 35799999999877 899999999999999975432 2344444557899999999999867779999999999999
Q ss_pred CCCCCCCCeeEecccC-CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEE
Q 014472 258 RTPSVSKPVQSVVAHQ-SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 258 ~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 336 (424)
.+.+. .++..+.++. ..+.....+|+++ +||..+..|.|.+....+ +..+..++. .+.|..++|+.+++ .|+++
T Consensus 288 e~ak~-~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT-~eli~s~Ki-eG~v~~~~fsSdsk-~l~~~ 362 (514)
T KOG2055|consen 288 ETAKV-TKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKT-KELITSFKI-EGVVSDFTFSSDSK-ELLAS 362 (514)
T ss_pred ccccc-ccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhh-hhhhheeee-ccEEeeEEEecCCc-EEEEE
Confidence 88774 3344444443 4678889999998 688999999999999887 778888875 78999999999996 56677
Q ss_pred eCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 337 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+.+|.|.+||++...+ .-.+.-.|.. .-++++.++++. +||+|+..|.|.||+.++-
T Consensus 363 ~~~GeV~v~nl~~~~~------------~~rf~D~G~v-~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSC------------LHRFVDDGSV-HGTSLCISLNGS-YLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred cCCceEEEEecCCcce------------EEEEeecCcc-ceeeeeecCCCc-eEEeccCcceEEEeccchh
Confidence 7788999999998532 1122222221 235677789999 6999999999999997654
No 195
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.7e-15 Score=141.76 Aligned_cols=247 Identities=27% Similarity=0.468 Sum_probs=186.2
Q ss_pred CceeEEEe-cCCCCcEEEE-EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC-CCc
Q 014472 126 GEVNRARY-MPQNPFLIAT-KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-DAQ 202 (424)
Q Consensus 126 ~~v~~i~~-~p~~~~~lat-g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~ 202 (424)
..+..+.+ ++++..+++. +..++.+.+|+... .......+..|...|.+++|+|++. .+++++. |+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~ 179 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST---------PGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGT 179 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC---------CCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCc
Confidence 36777777 7777634444 34499999999875 1244667888999999999999988 6888875 999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-EecccCCCeeEEEe
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAF 281 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~ 281 (424)
+++|++... ..+..+.+|...|.+++|+|++..++++++.|+.|++||.+.+.. +. .+..|.... ...|
T Consensus 180 ~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~~~~ 249 (466)
T COG2319 180 IKLWDLRTG------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-VSSF 249 (466)
T ss_pred eEEEEcCCC------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-eEeE
Confidence 999999863 345556669999999999998875665668999999998885442 44 466777765 4489
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+|++. ++++++.|+.+++||++.....+..+..|...+.++.|+|++. .+++++.|+.+.+|++.....
T Consensus 250 ~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~--------- 318 (466)
T COG2319 250 SPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL--------- 318 (466)
T ss_pred CCCCC-EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce---------
Confidence 99885 6779999999999999975443444467889999999999776 455688888899998876432
Q ss_pred CCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 362 GPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 362 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
... ...|...+..+.|.+++..++.++..|+.+.+|++....
T Consensus 319 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 319 -----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred -----EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 222 246777789999943324344444688999999998876
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.9e-15 Score=138.18 Aligned_cols=243 Identities=13% Similarity=0.142 Sum_probs=155.7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
++++...++.|.+|++... +.......+. +.+....++++|+++.+++++..++.|.+|++.... .+..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~-------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g---~l~~ 72 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHE-------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG---ALTF 72 (330)
T ss_pred EEEEcCCCCCEEEEEECCC-------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC---ceEE
Confidence 4555577899999999641 1122333443 445677899999888433444568899999996321 1111
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i 298 (424)
..... ..+....++++|+++.++++...++.|.+|++..... ...+..+ .+.....+++++|++++++++...++.|
T Consensus 73 ~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 73 AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 22111 2335678999999998887776799999999974322 1223222 2334567889999999877777788999
Q ss_pred EEEECCCCCCcc------eeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcC
Q 014472 299 KLFDLRKISTAL------HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG 372 (424)
Q Consensus 299 ~iwd~~~~~~~~------~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (424)
.+||+.+.+... .... .......+.|+|+++.++++...++.|.+|++...... .+.+.....
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~----------~~~~~~~~~ 219 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE----------IECVQTLDM 219 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC----------EEEEEEEec
Confidence 999998633221 1111 23456789999999754455455899999999742110 011111111
Q ss_pred ------CCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 373 ------HTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 373 ------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+......+.++|++++++++...++.|.+|++..
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 1122346889999996555545688999999954
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.3e-16 Score=124.08 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=171.2
Q ss_pred CCCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--cCC-----CCeeeE
Q 014472 112 ANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--GHS-----TEGYGL 184 (424)
Q Consensus 112 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~h~-----~~v~~l 184 (424)
+.++..++....|.++|+.++|.. .+|.+|+ ||.|+=|.......... .++...+. -|. -+|+++
T Consensus 49 ~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~----~K~lwe~~~P~~~~~~evPeINam 120 (325)
T KOG0649|consen 49 PPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLA----TKRLWEVKIPMQVDAVEVPEINAM 120 (325)
T ss_pred CCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhcc----chhhhhhcCccccCcccCCcccee
Confidence 456777888889999999999983 2566665 59999999876332111 11111111 122 368899
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC
Q 014472 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK 264 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~ 264 (424)
...|..+. ++.++.|+.++-||++++ +....+++|++.|.++.--.....+| +|+.||++++||+++.+..+
T Consensus 121 ~ldP~enS-i~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 121 WLDPSENS-ILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred EeccCCCc-EEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccCccee-ecCCCccEEEEeccccceeE
Confidence 99998775 566668999999999988 45677899999999999855555565 99999999999999987633
Q ss_pred CeeEec------cc-CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEe
Q 014472 265 PVQSVV------AH-QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 265 ~~~~~~------~~-~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 337 (424)
.+...+ .| ...|.+++.+ ..+ |++|+ ...+.+|.+|. .++..++.. ..++..+.|..+ .+++++
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~--edW-lvCGg-Gp~lslwhLrs-se~t~vfpi-pa~v~~v~F~~d---~vl~~G 263 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVN--EDW-LVCGG-GPKLSLWHLRS-SESTCVFPI-PARVHLVDFVDD---CVLIGG 263 (325)
T ss_pred EeccccChhhcCcccCceeEEEecc--Cce-EEecC-CCceeEEeccC-CCceEEEec-ccceeEeeeecc---eEEEec
Confidence 332221 11 2346666665 444 55554 56799999998 677777764 677888888754 466778
Q ss_pred CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
..+.+.-|.+.. .+...........++..|+..--.+|..++..+.+.|+.
T Consensus 264 ~g~~v~~~~l~G---------------vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 264 EGNHVQSYTLNG---------------VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeeeeecc---------------EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 777899998864 333333333334555666544333566667777777653
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.9e-16 Score=132.67 Aligned_cols=226 Identities=14% Similarity=0.283 Sum_probs=176.4
Q ss_pred EecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEE
Q 014472 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~ 253 (424)
+..-..+|+|.+|++++. .++.+.....|.||.....+ ..+....+..|...|+.|.|+|..+++ ++|+.|..-+
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~---~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnay 80 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGAD---LWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAY 80 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCC---CceeceehhhhCcceeEEeecCCCCce-eEccCCCCcc
Confidence 333457899999999988 59999999999999987653 245677788899999999999998765 5999999999
Q ss_pred EEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---cceeecCCCCCEEEEEEcCCCC
Q 014472 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST---ALHTFDSHKEEVFQVGWNPKNE 330 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~sp~~~ 330 (424)
||....+...++.-.+..++..+++|.|+|... .||+|+.-..|.||-+..... ..+.-+.+.+.|+++.|+|++-
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 999977766778778888999999999999776 699999999999998875221 2233445688999999999984
Q ss_pred cEEEEEeCCCeEEEeeCCCCCcccCCCccCCC---C-CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 331 TILASCCLGRRLMVWDLSRIDEEQTPEDAEDG---P-PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 331 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+|++|+.|+..++|..--......+....-+ | .+++.......+.|.++.|+|+|. .|+=.+.|..+.+=|...
T Consensus 160 -LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 -LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred -eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCC
Confidence 8999999999999976433222111111111 1 134444545567899999999999 688889999999988876
Q ss_pred C
Q 014472 407 N 407 (424)
Q Consensus 407 ~ 407 (424)
.
T Consensus 238 p 238 (361)
T KOG1523|consen 238 P 238 (361)
T ss_pred C
Confidence 5
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.1e-17 Score=141.61 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=153.9
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeC
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 208 (424)
.+++|+++|. .+|+|+.||++|||+... .........|..+|.+|.|+|++. +|++-+.| ..+||++
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps----------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~ 214 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPS----------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSV 214 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCc----------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEe
Confidence 6799999887 899999999999999876 455666778999999999999998 79999999 9999999
Q ss_pred CCCCCCCcccceeeeecCCcceeeEEeeCCC---C-cEEEEEeCCCeEEEEECCCCCCC--CCeeEecccCCCeeEEEec
Q 014472 209 NAAPKNKSLEAMQIFKVHEGVVEDVAWHLRH---E-YLFGSVGDDQYLLIWDLRTPSVS--KPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~-~~~~s~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~ 282 (424)
+++.......+ .........+.|+.++ . ++++....-+.|+.||+...... -+......-...|++++.+
T Consensus 215 ~~g~~~a~~t~----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 215 NTGAALARKTP----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred ccCchhhhcCC----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 98843322221 1223456677787665 2 23344445677888877543211 1111222234579999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
++|+ ++|.|+.||.|.|++..+.......-+.|...|+.+.|+|+.+ .+++.+.|..+.+..+..
T Consensus 291 ~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEee
Confidence 9998 6999999999999999986666666678999999999999986 688888898899888765
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.5e-17 Score=144.21 Aligned_cols=266 Identities=19% Similarity=0.298 Sum_probs=184.7
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC------------CCCCC------CcEEEe
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL------------DGACS------PDLRLR 175 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~------------~~~~~------~~~~~~ 175 (424)
.++++++.+.|+...+.|..+|+|++++|+|...-.|++||+.....+... ..... ....+.
T Consensus 40 ~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 40 QRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 467788889999999999999999999999999999999999874332210 00000 111122
Q ss_pred cCC-----------CCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEE
Q 014472 176 GHS-----------TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG 244 (424)
Q Consensus 176 ~h~-----------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 244 (424)
-|. .....++++.-... |+.++....|+=++++.+.- +..+....+.+++|..++.+. |||
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrf------L~P~~~~~~~lN~v~in~~hg-Lla 191 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRF------LNPFETDSGELNVVSINEEHG-LLA 191 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEcccccc------ccccccccccceeeeecCccc-eEE
Confidence 222 12345555544443 55555556788889988743 344455668999999999875 888
Q ss_pred EEeCCCeEEEEECCCCCCCCCeeE---ecccCC-----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce-eecC
Q 014472 245 SVGDDQYLLIWDLRTPSVSKPVQS---VVAHQS-----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH-TFDS 315 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~-----~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~ 315 (424)
+|+.+|.|..||.|..+....+.. +..|.. .|+++.|+.+|= .+++|..+|.+.|||+|. ..|+. .-.+
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa-~~pl~~kdh~ 269 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRA-SKPLLVKDHG 269 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEccc-CCceeecccC
Confidence 999999999999998664322221 122333 499999998775 599999999999999998 44443 3334
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014472 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395 (424)
Q Consensus 316 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 395 (424)
..-+|..+.|.+.+..--+.......++|||-.++.. .... .....++++++-|++. ++.++-+
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~--------------~asi-Ept~~lND~C~~p~sG-m~f~Ane 333 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP--------------MASI-EPTSDLNDFCFVPGSG-MFFTANE 333 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccCCc--------------eeec-cccCCcCceeeecCCc-eEEEecC
Confidence 4568999999876432233334456799999988642 2222 2244599999999988 7888888
Q ss_pred CCcEEEEecC
Q 014472 396 DNILQIWQMA 405 (424)
Q Consensus 396 d~~i~iw~~~ 405 (424)
+..+..|=+.
T Consensus 334 ~~~m~~yyiP 343 (703)
T KOG2321|consen 334 SSKMHTYYIP 343 (703)
T ss_pred CCcceeEEcc
Confidence 8877766544
No 201
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.7e-17 Score=145.81 Aligned_cols=204 Identities=18% Similarity=0.286 Sum_probs=162.4
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
+...+.|...|+.+.|+..|. +||+... ...|.|+++... ..+..+....+.|.++.|+|... +|
T Consensus 514 v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~----------~sQ~PF~kskG~vq~v~FHPs~p-~l 581 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKR----------KSQSPFRKSKGLVQRVKFHPSKP-YL 581 (733)
T ss_pred eEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEecccc----------cccCchhhcCCceeEEEecCCCc-eE
Confidence 566789999999999999997 6777554 358999999872 22334545567799999999887 56
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
++++. ..|+|||+.... .++.+......|..++.+|.|.++| .|+.|+.++.||+.-.. ++.+++..|..
T Consensus 582 fVaTq-~~vRiYdL~kqe------lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--kPyk~lr~H~~ 651 (733)
T KOG0650|consen 582 FVATQ-RSVRIYDLSKQE------LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--KPYKTLRLHEK 651 (733)
T ss_pred EEEec-cceEEEehhHHH------HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--chhHHhhhhhh
Confidence 66654 689999997642 2333444567899999999999887 78999999999998654 47788889999
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCC--------CCCcceeecCCCCC----EEEEEEcCCCCcEEEEEeCCCeE
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRK--------ISTALHTFDSHKEE----VFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~~----v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
.+++++|++.-+ ||++|+.||++.||--+- .-.|+..+.+|... |..+.|+|..+ .|++++.||+|
T Consensus 652 avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~ti 729 (733)
T KOG0650|consen 652 AVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTI 729 (733)
T ss_pred hhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceE
Confidence 999999999887 899999999999985331 12457788888765 99999999997 58899999999
Q ss_pred EEe
Q 014472 343 MVW 345 (424)
Q Consensus 343 ~iw 345 (424)
++|
T Consensus 730 rlf 732 (733)
T KOG0650|consen 730 RLF 732 (733)
T ss_pred Eee
Confidence 998
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=4.9e-16 Score=138.67 Aligned_cols=254 Identities=20% Similarity=0.281 Sum_probs=175.2
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEec-----CCCCceEEEEeCCCcEE
Q 014472 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS-----KFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 130 ~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s~~~dg~i~ 204 (424)
...++-.+..++.- ....+++|++.... ....++....-......+-+|+ +.+- -|+.|-.-|.|+
T Consensus 128 ~~~~~~~gd~lcFn--vg~~lyv~~~~g~~------~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~-dllIGf~tGqvq 198 (636)
T KOG2394|consen 128 NTNQSGKGDRLCFN--VGRELYVYSYRGAA------DLSKPIDKREYKGTSPTCHDFNSFTATPKGL-DLLIGFTTGQVQ 198 (636)
T ss_pred eccccCCCCEEEEe--cCCeEEEEEccCcc------hhccchhhhcccCCCCceecccccccCCCCc-ceEEeeccCceE
Confidence 34444455543332 23468888887411 1122222211122223344442 3333 377888889999
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC----------------------
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV---------------------- 262 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~---------------------- 262 (424)
+.|.......+.+.. ........|+++.|-|.+..+|+++-.+|.+++||......
T Consensus 199 ~idp~~~~~sklfne--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 199 LIDPINFEVSKLFNE--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred EecchhhHHHHhhhh--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 998765221111100 01113478999999999999999999999999997642100
Q ss_pred ---CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 014472 263 ---SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 263 ---~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
..|+..+..-.+.|+.++|+|+|+ .||+.+.||.++|||..+ .+.+..++.--+...|++|||||+ ++++|+.|
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGED 353 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGED 353 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCc
Confidence 012233333456789999999998 599999999999999997 556666665567899999999997 79999999
Q ss_pred CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCC-----------------------------------
Q 014472 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP----------------------------------- 384 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------------------------------- 384 (424)
..|.||.+... +++..-+||++.|+.|+|.|
T Consensus 354 DLVtVwSf~er--------------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 354 DLVTVWSFEER--------------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred ceEEEEEeccc--------------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 99999999764 67777889999999999983
Q ss_pred C------------CCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 385 C------------EDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 385 ~------------~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
. -.|.|.+.+.|-.+.+||+...++..
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 14678899999999999999887765
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=142.56 Aligned_cols=248 Identities=17% Similarity=0.260 Sum_probs=168.5
Q ss_pred EEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCC--CCCCCCCcEEEecCCCCeeeEEec-CCCCceE
Q 014472 118 IIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPP--LDGACSPDLRLRGHSTEGYGLSWS-KFKEGHL 194 (424)
Q Consensus 118 ~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l 194 (424)
+.++..|...|.|+.|+.... ++.+ +.|..+.+|.--...+... ......+. .-|.. ...-- ..+...|
T Consensus 7 ~~~k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt---~~h~~---~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 7 ICKKNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPT---DMHLG---GRSSGGGKGSDTL 78 (737)
T ss_pred hhhccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCCcccCCc---ccccc---ccccCCCCCcceE
Confidence 344446777778999998765 4444 4556666655333111110 00000000 01211 01000 0122368
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
+.++.||.+.+.+-... .......|.+.+.+-.|+|+|.-++ +++.||.|++|.-...- ..++.....
T Consensus 79 ~i~s~DGkf~il~k~~r-------VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGML----RStl~Q~~~ 146 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR-------VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGML----RSTVVQNEE 146 (737)
T ss_pred EEEcCCceEEEecccch-------hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchH----HHHHhhcCc
Confidence 89999999999875432 2344567999999999999998665 99999999999754321 122234567
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
+|+|++|.|+.+.++.+.+ +.+.|=-+.. ...+...++|.+-|.++.|++... ++++|+.|-..+|||-..
T Consensus 147 ~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G----- 217 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG----- 217 (737)
T ss_pred eeEEEEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC-----
Confidence 9999999999988776654 5677666665 455667889999999999999985 899999999999999865
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
+.++....|..+|++++|+|+ + +++.++. +++++=.++.|
T Consensus 218 ----------~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~-nt~R~~~p~~G 257 (737)
T KOG1524|consen 218 ----------ANLFTSAAEEYAITSVAFNPE-K-DYLLWSY-NTARFSSPRVG 257 (737)
T ss_pred ----------cccccCChhccceeeeeeccc-c-ceeeeee-eeeeecCCCcc
Confidence 668888899999999999999 4 4666653 45665555444
No 204
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.3e-15 Score=131.04 Aligned_cols=256 Identities=15% Similarity=0.168 Sum_probs=185.8
Q ss_pred cCCceeEEEecCCCCcEEEEEe-cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 124 HDGEVNRARYMPQNPFLIATKT-VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-...|..++|.-++..-+..+. .+..+..+.+....-... ............+|.+++... +.|++|-.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~ 126 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGN 126 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccccccccccccchhhcC---CEEEEEecCCc
Confidence 3456677777765543333333 666677777665211110 111123445566777777642 35999999999
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC--CeEEEEECCCCCCCCCeeEecc---------
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVA--------- 271 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~--------- 271 (424)
+.+|....+.... ..+..+.. ...+..+.-++..++++|+|+.. ..+.+||+.+.+. +..-+.
T Consensus 127 l~~~~~k~~d~hs--s~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---iw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 127 LQVRHDKSGDLHS--SKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---IWSAKNVPNDRLGLR 200 (412)
T ss_pred EEEEeccCCcccc--ccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee---eeeccCCCCccccce
Confidence 9999998654211 12222332 35677888888889999999998 8899999988532 222111
Q ss_pred cCCCeeEEEecCC-CCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 272 HQSEVNCLAFNPF-NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 272 ~~~~v~~i~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
-+-.++.+.|-+. -.+.||+++.-+.+++||.+...+|+..+.....+++++...|.+. ++++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhheecccCc
Confidence 1224577788774 1457999999999999999998899999999999999999999996 6889999999999999986
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
. .+...+.+..+.|+++..+|..+ +++++|-|..|||+|+.+.
T Consensus 280 k-------------l~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 K-------------LLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred e-------------eeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 3 22233678889999999999999 7999999999999999984
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.9e-15 Score=127.65 Aligned_cols=247 Identities=16% Similarity=0.247 Sum_probs=161.1
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
.-.+..++|++.- ..+|++..|-.|++|+-.. .. ...++ .....|++++|-|.+...|+.|+. +-|
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss----------t~-pt~Lks~sQrnvtclawRPlsaselavgCr-~gI 164 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS----------TC-PTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGI 164 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC----------CC-CceecchhhcceeEEEeccCCcceeeeeec-cee
Confidence 3567889999843 4688899999999999765 11 12222 245679999999998877888776 568
Q ss_pred EEEeCCCCCCCCc------ccc--eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 204 CLWDINAAPKNKS------LEA--MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 204 ~vwd~~~~~~~~~------~~~--~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++|.......... ... +....+| .+|++++|++++..++-+.-.|..|.|||..++.. .++. ....+.
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~--~~glgg 240 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLI--PKGLGG 240 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-cccc--ccCCCc
Confidence 9998754322111 011 1122334 68999999999976654444678899999998774 2333 233567
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQT 355 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 355 (424)
++-+.|+|++.+ |+++.-|+..++|.............+ .+.|...+|+|.|+.+|++++..- ++|.+....+...
T Consensus 241 ~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 241 FSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSV 316 (445)
T ss_pred eeeEEEcCCCCE-EEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCcc
Confidence 889999999996 667778999999966553433333333 559999999999998888877654 4555544332221
Q ss_pred CCccCCCC-CeeeEEE------cC---CCCCcceEEeCCCCCcEEEE
Q 014472 356 PEDAEDGP-PELLFIH------GG---HTSKISDFSWNPCEDWVISS 392 (424)
Q Consensus 356 ~~~~~~~~-~~~~~~~------~~---h~~~v~~~~~~~~~~~~l~s 392 (424)
........ ..++..+ .+ -.+.+.+++|.|.|.++.++
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 11111100 0111111 11 13568899999999974444
No 206
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.6e-16 Score=141.25 Aligned_cols=221 Identities=17% Similarity=0.207 Sum_probs=156.3
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
.+...-+|.++|.|+++.+.+. .+.+|+.||+|+.|++..................+.||.+.|+.+++++... .|++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Lls 413 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLS 413 (577)
T ss_pred eeEEEecccCceEEEEecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceee
Confidence 3455568999999999999886 7999999999999988732111111222344567889999999999999777 5999
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc-----
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA----- 271 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~----- 271 (424)
++.||++++|+...... ..+. .-. -.+...++.+-.....+.++ +..+..+++........+..+..
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~---~~~-e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFG---EPK-EHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred ecCCceEEeeccCCcCc-cccC---Ccc-ccCCcceEeeccchhHhhhh---hcccccccchhhhhhhheeeccccCCCc
Confidence 99999999999865533 1111 111 12233455554333222222 23333333333222112222211
Q ss_pred --cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 272 --HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 272 --~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
....++.+.++|.++ +.+++..|+.|+++|..+ +.+++....|...++++++.|+|. +|++++.|+.+++|.+..
T Consensus 486 ~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ccccCccceEEecCCCC-eeEecccCCceecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 124578889999887 788999999999999998 889999999999999999999997 799999999999999865
Q ss_pred C
Q 014472 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
.
T Consensus 563 k 563 (577)
T KOG0642|consen 563 K 563 (577)
T ss_pred h
Confidence 3
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.8e-15 Score=141.47 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=143.6
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeee
Q 014472 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~ 223 (424)
+..|++||... .....+..|...+.+.+|+|++. .|+.++.+ ..|.+||+.++.. ..+..+
T Consensus 183 ~~~i~i~d~dg-----------~~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~----~~l~~~ 246 (429)
T PRK01742 183 PYEVRVADYDG-----------FNQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGAR----KVVASF 246 (429)
T ss_pred eEEEEEECCCC-----------CCceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCce----EEEecC
Confidence 46899999876 12345667888899999999998 46665543 3699999976532 122223
Q ss_pred ecCCcceeeEEeeCCCCcEEEEEeCCCeEEEE--ECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014472 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 224 ~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iw 301 (424)
.+ ....++|+|+++.++.+.+.+|.+.|| |+.++. ...+..+...+...+|+|+|+.+++++..+|...||
T Consensus 247 ~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 247 RG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred CC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 33 344689999998776666678876555 655443 344555667788999999999766666678888999
Q ss_pred ECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEE
Q 014472 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 302 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
++...+.....+ .+.. ....|+|+++. |+..+.++ +.+||+..+.. ..+. ..+ ....+.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~------------~~lt--~~~--~~~~~~ 378 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGST------------EVLS--STF--LDESPS 378 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCe------------EEec--CCC--CCCCce
Confidence 876533333333 3333 46789999974 55555565 66699876532 1111 111 235678
Q ss_pred eCCCCCcEEEEEeCCCcEEEEec
Q 014472 382 WNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 382 ~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
|+|+|+ +|+.++.++.+.+|.+
T Consensus 379 ~sPdG~-~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 379 ISPNGI-MIIYSSTQGLGKVLQL 400 (429)
T ss_pred ECCCCC-EEEEEEcCCCceEEEE
Confidence 999999 5777777888888775
No 208
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.71 E-value=1.2e-13 Score=126.58 Aligned_cols=304 Identities=12% Similarity=0.174 Sum_probs=198.0
Q ss_pred EEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEEEe
Q 014472 66 MILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKT 145 (424)
Q Consensus 66 ~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~ 145 (424)
+++|+++. +..+.|++.+++. ..+.+.......-......++++|++..+.++..
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~------------------------~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e 56 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDE------------------------ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNE 56 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEET------------------------TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEET
T ss_pred EEEEcCCC-CCCCcEEEEEEcC------------------------CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEc
Confidence 67899887 4557888887731 2456777777777778888999999886555544
Q ss_pred ---cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014472 146 ---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI 222 (424)
Q Consensus 146 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 222 (424)
..|.|..|++.... +....+............++.+|++..++++...+|.|.++++..............
T Consensus 57 ~~~~~g~v~~~~i~~~~------g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 57 GSGDSGGVSSYRIDPDT------GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp TSSTTTEEEEEEEETTT------TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred cccCCCCEEEEEECCCc------ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence 36899999988621 122333334434455678999999884444444699999999987522211111111
Q ss_pred ee--------cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-CCCeeEe-cccCCCeeEEEecCCCCeEEEEE
Q 014472 223 FK--------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV-VAHQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 223 ~~--------~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g 292 (424)
.. .......++.++|++++++++.-....|.+|++..... ......+ .......+.++|+|+++++.++.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 10 12345788999999998887776677899999987542 1111222 23456789999999999877888
Q ss_pred eCCCcEEEEECCCC-CC--cceeecC------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC
Q 014472 293 STDKTVKLFDLRKI-ST--ALHTFDS------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP 363 (424)
Q Consensus 293 ~~dg~i~iwd~~~~-~~--~~~~~~~------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 363 (424)
-.++.|.+|++... +. .+..+.. .......++++|+++.++++....+.|.+|++.... +.
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~----------g~ 280 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT----------GT 280 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT----------TT
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC----------Cc
Confidence 88999999999831 21 1112211 122688999999998777777778899999995321 11
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC--CCCCC
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA--ENIYH 410 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~--~~~~~ 410 (424)
...+............++++|+|++++++...++.|.+|+++ ++.+.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 133333332234478999999999877777788999999874 55543
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5e-15 Score=139.70 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=143.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..|...+...+|+|++.. ||..+.+ ..|++||+.+ +....+..+.+| ...++|+|++..++++.+
T Consensus 200 t~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~t--------g~~~~l~~~~g~---~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRS--------GARKVVASFRGH---NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCC--------CceEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence 356778999999999984 5554432 4799999876 212222223333 447899999984344445
Q ss_pred CCCcEEEE--eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 199 DDAQICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 199 ~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
.+|.+.|| |+.++. ...+..+...+....|+|+++.++.++..+|...||++...... ...+ .+..
T Consensus 268 ~~g~~~Iy~~d~~~~~-------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~~~-- 335 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--ASLV-GGRG-- 335 (429)
T ss_pred cCCcEEEEEEECCCCC-------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--eEEe-cCCC--
Confidence 78876666 554431 23344466678899999999877766667888888887643321 2222 2333
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+.+|+|+++. |+.++.++ +.+||+.+ +........ ....++.|+|+++ +|+.++.++.+.+|.+....
T Consensus 336 ~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~-g~~~~lt~~--~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~----- 404 (429)
T PRK01742 336 YSAQISADGKT-LVMINGDN-VVKQDLTS-GSTEVLSST--FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSAD----- 404 (429)
T ss_pred CCccCCCCCCE-EEEEcCCC-EEEEECCC-CCeEEecCC--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECC-----
Confidence 46789999995 55555554 66699987 332221122 2335688999997 67777778888888764211
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
......+.+|.+.+...+|+|-
T Consensus 405 -------G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 405 -------GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -------CCceEEccCCCCCCCCcccCCC
Confidence 1345556677788899999985
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=8e-16 Score=125.60 Aligned_cols=219 Identities=18% Similarity=0.275 Sum_probs=151.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCC--------------------CCC---------CCC-------
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPS--------------------KPP---------LDG------- 166 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~--------------------~~~---------~~~------- 166 (424)
.|...|+.+.--|++ -+.+-+.|+.+.+|++..... ..+ ..+
T Consensus 54 ~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~ 131 (323)
T KOG0322|consen 54 FGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ 131 (323)
T ss_pred hccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence 456678888888865 367778888888998765100 000 000
Q ss_pred -CCCCcEE-E-----ecCCCCeeeEEecCC-CC-ceEEEEeCCCcEEEEeCCCCCCC----CcccceeeeecCCcceeeE
Q 014472 167 -ACSPDLR-L-----RGHSTEGYGLSWSKF-KE-GHLLSGSDDAQICLWDINAAPKN----KSLEAMQIFKVHEGVVEDV 233 (424)
Q Consensus 167 -~~~~~~~-~-----~~h~~~v~~l~~~~~-~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~i 233 (424)
...+... + .+..+.+.+..|... +. -+|++|..+|.+.+||+.++... ...+.......|..+|.++
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 0000000 0 112345666665332 22 24677888999999999886332 1222334456799999999
Q ss_pred EeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-EecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCccee
Q 014472 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT 312 (424)
Q Consensus 234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 312 (424)
.+.+.-..=+ +|+.+..+..|.+......-++. ......-.|..+..-|+++ ++||++.|+.||||..|+ ..++..
T Consensus 212 dyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAV 288 (323)
T KOG0322|consen 212 DYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAV 288 (323)
T ss_pred eechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhh
Confidence 9987544333 78888889999987542211121 1122244688899999998 899999999999999999 789999
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 313 FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 313 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
+..|+..|++++|+|+.+ ++|+++.|++|.+|++
T Consensus 289 LkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 999999999999999975 8999999999999986
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.4e-13 Score=116.43 Aligned_cols=197 Identities=16% Similarity=0.286 Sum_probs=141.5
Q ss_pred eeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 128 VNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
|--+-|+. .++|..+.+ ..++++++.+ ...+..+. ...+|.++.++.+ +|+++-.+ .|+|
T Consensus 49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk----------~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee-~IyI 110 (391)
T KOG2110|consen 49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKK----------KTTICEIF-FPTSILAVRMNRK---RLVVCLEE-SIYI 110 (391)
T ss_pred EEEeeccc---ceeEEEecCCCceEEEEEccc----------CceEEEEe-cCCceEEEEEccc---eEEEEEcc-cEEE
Confidence 33455554 255554443 3588888876 22222232 5678999998752 57776665 4999
Q ss_pred EeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
||+++...... +.....+...+.++++++.+.++..-++ ..|.|.+||+.+ .+++..+.+|++.+-+++|+++
T Consensus 111 ydI~~MklLhT---I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 111 YDIKDMKLLHT---IETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred Eecccceeehh---hhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEecCCceeEEEECCC
Confidence 99987744322 2223345556777777766655543333 468999999988 4468888899999999999999
Q ss_pred CCeEEEEEeCCCc-EEEEECCCCCCcceeecCC--CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 285 NEWILATGSTDKT-VKLFDLRKISTALHTFDSH--KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 285 ~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|. +|||++..|+ ||||.+.+ ++.+..|.-- ...|.+++|+|+++ +|++.+..++|+||.+....
T Consensus 185 G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 185 GT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 98 7999999996 79999988 7777777632 34789999999996 79899999999999997654
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=3.7e-16 Score=137.06 Aligned_cols=231 Identities=16% Similarity=0.270 Sum_probs=177.1
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
....+.|..+|. .++.|+..|.|-.+|..+ ......+. -...|.++.|..+.+ ++|++ ....++||
T Consensus 131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t----------~~L~~Ei~-v~Etv~Dv~~LHneq-~~AVA-QK~y~yvY 196 (545)
T KOG1272|consen 131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVT----------KKLHFEIN-VMETVRDVTFLHNEQ-FFAVA-QKKYVYVY 196 (545)
T ss_pred CCeeeeecCCcc-EEEecCCccceeeeeccc----------ceeeeeee-hhhhhhhhhhhcchH-HHHhh-hhceEEEe
Confidence 345688898887 566678899999999987 22233332 456789999988665 55554 56789999
Q ss_pred eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCC
Q 014472 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 286 (424)
|-... .+..+.. ...|..+.|.|.. +++++++..|.++.-|+.+++. +..+..-.+.+..++-+|.+.
T Consensus 197 D~~Gt-------ElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~Gkl---Va~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 197 DNNGT-------ELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKL---VASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred cCCCc-------EEeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhh---hHHHHccCCccchhhcCCccc
Confidence 96532 1222332 3578899999986 6889999999999999999886 555555678899999999887
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCee
Q 014472 287 WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 287 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
++-+|...|+|.+|...+ ..|+..+..|.++|.++++.++|. +++|++.|..++|||++... ++
T Consensus 265 -Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~-------------ql 328 (545)
T KOG1272|consen 265 -VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY-------------QL 328 (545)
T ss_pred -eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc-------------cc
Confidence 799999999999999988 788888889999999999999995 89999999999999999854 22
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
..... ..+...+++|..| +||. |....|.||.=
T Consensus 329 ~t~~t--p~~a~~ls~Sqkg--lLA~-~~G~~v~iw~d 361 (545)
T KOG1272|consen 329 HTYRT--PHPASNLSLSQKG--LLAL-SYGDHVQIWKD 361 (545)
T ss_pred ceeec--CCCcccccccccc--ceee-ecCCeeeeehh
Confidence 22222 2346778888665 3544 45667999964
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=7.6e-14 Score=117.20 Aligned_cols=238 Identities=12% Similarity=0.194 Sum_probs=156.3
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--CeeeEEecCCCCceE-EEEeCC-----
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFKEGHL-LSGSDD----- 200 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l-~s~~~d----- 200 (424)
..++|+.|.. .+|+|..+| .+||+++.. +.......+.+ .+.-+-|- .++| ++|+.+
T Consensus 9 lsvs~NQD~S-cFava~~~G-friyn~~P~----------ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 9 LSVSFNQDHS-CFAVATDTG-FRIYNCDPF----------KESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYP 73 (346)
T ss_pred eEEEEccCCc-eEEEEecCc-eEEEecCch----------hhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCC
Confidence 3489998776 788887666 899998761 11111111111 22222222 1233 344333
Q ss_pred -CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC-CCCCCCeeEecccCCCeeE
Q 014472 201 -AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 201 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~ 278 (424)
..|.|||=... .++..+. ...+|.++.+.++ .++ +. ....|+||.... .+....+.+ ...+..+.+
T Consensus 74 pNkviIWDD~k~------~~i~el~-f~~~I~~V~l~r~--riV-vv-l~~~I~VytF~~n~k~l~~~et-~~NPkGlC~ 141 (346)
T KOG2111|consen 74 PNKVIIWDDLKE------RCIIELS-FNSEIKAVKLRRD--RIV-VV-LENKIYVYTFPDNPKLLHVIET-RSNPKGLCS 141 (346)
T ss_pred CceEEEEecccC------cEEEEEE-eccceeeEEEcCC--eEE-EE-ecCeEEEEEcCCChhheeeeec-ccCCCceEe
Confidence 46999993222 2333333 5678999999875 243 33 467899999873 332222222 223445666
Q ss_pred EEecCCCCeEEEE-EeCCCcEEEEECCCCCC-cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEeeCCCCCcccC
Q 014472 279 LAFNPFNEWILAT-GSTDKTVKLFDLRKIST-ALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-LMVWDLSRIDEEQT 355 (424)
Q Consensus 279 i~~~~~~~~~l~~-g~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~iwd~~~~~~~~~ 355 (424)
++-+.... +||. |..-|.|.|-|+..... +...+.+|.+.|.+++.+.+|. ++||+|..|+ |+|||..++..
T Consensus 142 ~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~--- 216 (346)
T KOG2111|consen 142 LCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL--- 216 (346)
T ss_pred ecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE---
Confidence 65555444 4444 55679999999987433 4678899999999999999995 8999999997 89999998743
Q ss_pred CCccCCCCCeeeEEEc--CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 356 PEDAEDGPPELLFIHG--GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 356 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+..++ .....|++++|+|+.. +||++|+-|+|+|+.+......
T Consensus 217 -----------l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 217 -----------LQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred -----------eeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCC
Confidence 33222 2245699999999999 5888899999999999876543
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.1e-13 Score=118.05 Aligned_cols=255 Identities=16% Similarity=0.215 Sum_probs=158.6
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC----CCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
-+..|+|++|-|.+..-||+|+.. -|.||..+...+.... ......+..-.+| ..|++++|+++|. .+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeeccc
Confidence 357899999999887789999865 5999998753222110 1111222333445 6899999999998 5777664
Q ss_pred -CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 200 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
|..|.|||+.++.... +. ....+.+.-+.|+|++..+| ++.-|+..++|...+..... ......+.|..
T Consensus 216 gsssi~iWdpdtg~~~p----L~--~~glgg~slLkwSPdgd~lf-aAt~davfrlw~e~q~wt~e---rw~lgsgrvqt 285 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIP----LI--PKGLGGFSLLKWSPDGDVLF-AATCDAVFRLWQENQSWTKE---RWILGSGRVQT 285 (445)
T ss_pred CcceEEEEcCCCCCccc----cc--ccCCCceeeEEEcCCCCEEE-Eecccceeeeehhcccceec---ceeccCCceee
Confidence 6789999999886532 11 12356788999999999877 66789999999766543211 12223458999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------ceee-----cC----CCCCEEEEEEcCCCCcEEEE
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTA--------------LHTF-----DS----HKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--------------~~~~-----~~----~~~~v~~~~~sp~~~~~l~s 335 (424)
.+|+|.|+++|++.+.... +|.+.-.+++ +..+ .. -.+.+.+++|.|.|. +||+
T Consensus 286 acWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav 362 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAV 362 (445)
T ss_pred eeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEE
Confidence 9999999988888775544 4433211111 0001 11 146789999999997 5666
Q ss_pred EeCCC--------eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCC---CCCcEEEEEeCCCcEEEEec
Q 014472 336 CCLGR--------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP---CEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 336 ~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~~d~~i~iw~~ 404 (424)
.-..+ .|.+||.+.... .++...-........-++|+| +++ +|..+=..|.+.-|.+
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~sp~-----------vels~cg~i~ge~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKSPP-----------VELSYCGMIGGEYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccccCc-----------eEEEecccccCCCCceEEeeecccCCc-EEEEEeccCceEeeee
Confidence 54433 256677665211 111110000011134455554 345 5555556777777766
Q ss_pred CC
Q 014472 405 AE 406 (424)
Q Consensus 405 ~~ 406 (424)
.-
T Consensus 431 ~f 432 (445)
T KOG2139|consen 431 TF 432 (445)
T ss_pred EE
Confidence 43
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.7e-15 Score=127.03 Aligned_cols=175 Identities=15% Similarity=0.223 Sum_probs=137.4
Q ss_pred cEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
.+.+.+|.+.|.+|.|+.++. +|++|+.|..+++|++...-..+..+++.... .|.+.|.|++|...+.. +.+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~-~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF-LYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee-EecCCCc
Confidence 345678999999999999876 89999999999999997654434434555444 35689999999987664 4599999
Q ss_pred CeEEEEECCCCCCCCCeeEe--cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec--CCCCCEEEEEE
Q 014472 250 QYLLIWDLRTPSVSKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD--SHKEEVFQVGW 325 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~ 325 (424)
++|.+.|+.+.+. +..+ ....+.|+.+..+|... +|++.+.+|.|.+||.|....++..+. ........+.|
T Consensus 127 ~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 127 GTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ceeEeeeccccee---eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 9999999998664 4433 22345899999999865 799999999999999997443443332 23456788999
Q ss_pred cCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 326 NPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+|..+.+|++.+..+-+-+||++...
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred cCCCceeEEeccccCCCCceeecccc
Confidence 99999999999998889999998653
No 216
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.9e-12 Score=110.21 Aligned_cols=298 Identities=13% Similarity=0.178 Sum_probs=195.0
Q ss_pred EEEEEeecCCCCCCCeEEEEEEEcCCCCCCcccCCCCCcCCCCCCCCCCCCcEEEEEEeccCCceeEEEecCCCCcEEEE
Q 014472 64 QKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIAT 143 (424)
Q Consensus 64 ~~~~~gt~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~lat 143 (424)
+.+++||+|... ..-|+++.+.-+ .+.+...+...+.+.++-|+|+|+++.+.+.
T Consensus 3 ~~~YiGtyT~~~-s~gI~v~~ld~~------------------------~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v 57 (346)
T COG2706 3 QTVYIGTYTKRE-SQGIYVFNLDTK------------------------TGELSLLQLVAELGNPTYLAVNPDQRHLYVV 57 (346)
T ss_pred eEEEEeeecccC-CCceEEEEEeCc------------------------ccccchhhhccccCCCceEEECCCCCEEEEE
Confidence 578899998653 456777777422 3455666677888899999999988755544
Q ss_pred Eec--CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe-CCCcEEEEeCCCCCCCCcccce
Q 014472 144 KTV--SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DDAQICLWDINAAPKNKSLEAM 220 (424)
Q Consensus 144 g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 220 (424)
... .|.|..|.++... +....+.....-..+...++.++++. +++++. .-|.|.++-++...... ..
T Consensus 58 ~~~~~~ggvaay~iD~~~------G~Lt~ln~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~---~~ 127 (346)
T COG2706 58 NEPGEEGGVAAYRIDPDD------GRLTFLNRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQ---PV 127 (346)
T ss_pred EecCCcCcEEEEEEcCCC------CeEEEeeccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccc---cc
Confidence 444 6888888887521 11111111111223347899999988 555554 47899999997643222 22
Q ss_pred eeeecCCcc----------eeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEE
Q 014472 221 QIFKVHEGV----------VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290 (424)
Q Consensus 221 ~~~~~~~~~----------v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 290 (424)
.....|.+. +....+.|++++++++.-.--.|.+|++..+................+.|.|+|+++..-+
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~ 207 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL 207 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE
Confidence 122234444 8889999999887765545567999999866532111111234567899999999997666
Q ss_pred EEeCCCcEEEEECCCCCCcceeecC---------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 291 TGSTDKTVKLFDLRKISTALHTFDS---------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 291 ~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+.-.+++|.+|........+..++. -......+..+|+|+.+.++--....|.+|.+.....
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g--------- 278 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG--------- 278 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---------
Confidence 6667999999999874333333321 2456788999999985444433455788888875421
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.-.++.....+.....++.+++.+++|+++.-.+..|.+|..+.
T Consensus 279 -~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 279 -KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred -EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 11333334444555789999999997666666667899998764
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.6e-13 Score=128.52 Aligned_cols=221 Identities=12% Similarity=0.112 Sum_probs=145.6
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..|...+.+.+|+|+++ .|+..+. +..|.+||+.++.. ..+.
T Consensus 182 ~~l~~~d~dg-----------~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~-------~~l~ 242 (435)
T PRK05137 182 KRLAIMDQDG-----------ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQR-------ELVG 242 (435)
T ss_pred eEEEEECCCC-----------CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcE-------EEee
Confidence 4788888765 23455667888999999999998 4655542 46899999977632 2233
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCCe--EEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL 300 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~i 300 (424)
.+.+.+...+|+|+++.++++.+.++. |.+||+.++. ...+..+........|+|+++.++++...+| .|++
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 455677889999999987767776665 7777887755 3344455666778999999996555444444 5778
Q ss_pred EECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
+|+.. + ....+..+...+....|+|+++.++++.... ..|.+||+..... ..+ . .+ ..+.
T Consensus 319 ~d~~g-~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~------------~~l-t-~~--~~~~ 380 (435)
T PRK05137 319 MNADG-S-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE------------RIL-T-SG--FLVE 380 (435)
T ss_pred EECCC-C-CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce------------Eec-c-CC--CCCC
Confidence 88764 3 3344444455677889999998544444333 3577788754221 111 1 11 2467
Q ss_pred eEEeCCCCCcEEEEEeCC-----CcEEEEecCCCCC
Q 014472 379 DFSWNPCEDWVISSVAED-----NILQIWQMAENIY 409 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~ 409 (424)
...|+|+|+.+++++... ..|.+.++..+..
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 889999999655554433 2577778766543
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.5e-13 Score=125.64 Aligned_cols=219 Identities=11% Similarity=0.079 Sum_probs=139.2
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe---CCCcEEEEeCCCCCCCCcccceeeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS---DDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..+...+.+.+|+|+|+. |+..+ .+..|.+|++.++.. ..+..
T Consensus 179 ~~l~~~d~dg-----------~~~~~lt~~~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~----~~l~~-- 240 (429)
T PRK03629 179 YELRVSDYDG-----------YNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAV----RQVAS-- 240 (429)
T ss_pred eeEEEEcCCC-----------CCCEEeecCCCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCe----EEccC--
Confidence 3788888875 123345556778999999999985 55433 245799999976532 11222
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEE-
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF- 301 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iw- 301 (424)
..+.+...+|+|+++.++.+.+.+| .|++||+.++. +..+..+...+....|+|+|+.++++...++...||
T Consensus 241 -~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 241 -FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred -CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 2333557899999998776656555 48889998765 333444455778899999999655555445555555
Q ss_pred -ECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 302 -DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 302 -d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
|+.. + ....+..+........|+|+|+.+++++..++ .|.+||+..+.. ..+. .. ....
T Consensus 316 ~d~~~-g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------~~Lt--~~--~~~~ 377 (429)
T PRK03629 316 VNING-G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------QVLT--DT--FLDE 377 (429)
T ss_pred EECCC-C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------EEeC--CC--CCCC
Confidence 5554 2 33444444455678999999986555554443 477888876431 1111 11 1235
Q ss_pred eEEeCCCCCcEEEEEeCCCc---EEEEecCCCC
Q 014472 379 DFSWNPCEDWVISSVAEDNI---LQIWQMAENI 408 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d~~---i~iw~~~~~~ 408 (424)
...|+|+|+. |+.++.++. +.++++....
T Consensus 378 ~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 378 TPSIAPNGTM-VIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CceECCCCCE-EEEEEcCCCceEEEEEECCCCC
Confidence 6789999995 555555553 6777876543
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=7.1e-15 Score=134.57 Aligned_cols=203 Identities=17% Similarity=0.322 Sum_probs=156.4
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.|..++|-|+|..++++++ ..+.+||.+.+. .+..+++|.+.|++++|+.+|. .||+|+.|..|.+|..+-
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~------llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGT------LLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcc------cccccccccceEEEEEEccCCc-eeccCCCceeEEEecccc
Confidence 7899999999997555543 579999999884 4667789999999999999997 789999999999998765
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
... +. ..|...|.|+.|+|-.. .|++++.. ..-+|.... +.+...+ ....+.+++|..+|. +|+.|-.+
T Consensus 85 EG~---Lk--YSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGq-ylalG~~n 153 (1081)
T KOG1538|consen 85 EGI---LK--YSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQ-YLALGMFN 153 (1081)
T ss_pred cce---ee--eccCCeeeEeecCchHH-Hhhhcchh-hccccChhh--hhHHhhh-hheeEEEeeecCCCc-EEEEeccC
Confidence 432 22 36999999999999877 58787653 467887664 2233332 256889999999995 89999999
Q ss_pred CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC----CcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 014472 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE----DWVISSVAEDNILQIWQMAENIYHDEDD 414 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 414 (424)
|+|.|-+-... +...+....|.+++|++++|+|.. ..+++......++.++.++......+..
T Consensus 154 GTIsiRNk~gE------------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~ 220 (1081)
T KOG1538|consen 154 GTISIRNKNGE------------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA 220 (1081)
T ss_pred ceEEeecCCCC------------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc
Confidence 99998754321 113344446778899999999963 2378889999999999998877654443
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=3.5e-14 Score=118.10 Aligned_cols=160 Identities=19% Similarity=0.450 Sum_probs=111.2
Q ss_pred eeEEeeCCCCcEEEEEeC---------CCeEEEEECCCCCCCCCeeEecc-cCCCeeEEEecCCCCeEEEE-EeCCCcEE
Q 014472 231 EDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILAT-GSTDKTVK 299 (424)
Q Consensus 231 ~~i~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~-g~~dg~i~ 299 (424)
..+.|++.|.++++.... -|...+|.++.... ++..+.. ..++|.+++|+|++..++++ |..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 467899999888766652 23456666654432 2333322 34579999999999865433 44678999
Q ss_pred EEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCC
Q 014472 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK 376 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 376 (424)
+||++ ..++..+. ...+..+.|+|+|+ +|++++. .|.|.+||++.. +.+.... | ..
T Consensus 87 lyd~~--~~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~--------------~~i~~~~-~-~~ 145 (194)
T PF08662_consen 87 LYDVK--GKKIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK--------------KKISTFE-H-SD 145 (194)
T ss_pred EEcCc--ccEeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC--------------EEeeccc-c-Cc
Confidence 99997 46666664 56788999999997 5666653 467999999864 3333332 3 34
Q ss_pred cceEEeCCCCCcEEEEEe-----CCCcEEEEecCCCCCCCCC
Q 014472 377 ISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHDED 413 (424)
Q Consensus 377 v~~~~~~~~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~ 413 (424)
++.++|+|+|++++.+++ .|+.++||++....+....
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 789999999997555554 3899999999877654433
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.4e-13 Score=128.21 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=135.0
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC-C--CcEEEEeCCCCCCCCcccceeeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-D--AQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..+...+.+.+|+|++. .|+..+. + ..|.+||+.++.. ..+.
T Consensus 176 ~~L~~~D~dG-----------~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~-------~~l~ 236 (427)
T PRK02889 176 YQLQISDADG-----------QNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRR-------RVVA 236 (427)
T ss_pred cEEEEECCCC-----------CCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCE-------EEee
Confidence 4577777644 22344556778899999999998 4655543 2 3599999987632 1122
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC--CCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL--RTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 302 (424)
...+.+...+|+|+++.++++.+.+|...||.+ ..+. ...+..+........|+|+|+.+++++..+|...+|.
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence 233456688999999887767778887666654 3332 3344445556677899999997665555566677776
Q ss_pred CCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceE
Q 014472 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF 380 (424)
Q Consensus 303 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 380 (424)
+...+.....+..+........|+|+|+.+++++..++ .|.+||+..+.. ..+ .. .......
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~------------~~l---t~-~~~~~~p 376 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV------------TAL---TD-TTRDESP 376 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe------------EEc---cC-CCCccCc
Confidence 54322222233223334556899999975444433333 699999876432 111 11 1234678
Q ss_pred EeCCCCCcEEEEEeCCCc--EEEEec
Q 014472 381 SWNPCEDWVISSVAEDNI--LQIWQM 404 (424)
Q Consensus 381 ~~~~~~~~~l~s~~~d~~--i~iw~~ 404 (424)
.|+|+++.++++....|. +.+-++
T Consensus 377 ~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 377 SFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred eECCCCCEEEEEEecCCCEEEEEEEC
Confidence 999999976666555554 444444
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.4e-13 Score=128.57 Aligned_cols=219 Identities=14% Similarity=0.100 Sum_probs=140.8
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.+||... .....+..+...+.+.+|+|++. .|+.++. ...|.+||+.++.. ..+.
T Consensus 184 ~~l~i~D~~g-----------~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~-------~~l~ 244 (433)
T PRK04922 184 YALQVADSDG-----------YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQR-------ELVA 244 (433)
T ss_pred EEEEEECCCC-----------CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCE-------EEec
Confidence 4688898765 22345666777899999999998 4666553 34699999976532 1122
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCc--EEE
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKL 300 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~--i~i 300 (424)
...+.....+|+|+++.++++.+.+| .|++||+.++. +..+..+.......+|+|+++.++++...+|. |.+
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 23344557899999998876766666 59999998765 23344455556788999999975555545555 666
Q ss_pred EECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
+|+.. +. ...+..+.......+|+|+|+.++++...++ .|.+||+..+.. . .+. +.....
T Consensus 321 ~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~------------~---~Lt-~~~~~~ 382 (433)
T PRK04922 321 VAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV------------R---TLT-PGSLDE 382 (433)
T ss_pred EECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe------------E---ECC-CCCCCC
Confidence 66655 22 3333333444567899999985444443333 588999876431 1 111 122345
Q ss_pred eEEeCCCCCcEEEEEeCC--CcEEEEecCCC
Q 014472 379 DFSWNPCEDWVISSVAED--NILQIWQMAEN 407 (424)
Q Consensus 379 ~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~ 407 (424)
...|+|+|+.++++.... +.|.++++..+
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 679999999655554433 35777777654
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.4e-13 Score=128.63 Aligned_cols=259 Identities=16% Similarity=0.188 Sum_probs=186.5
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCC--ceEEEEeCCCcEEEE
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKE--GHLLSGSDDAQICLW 206 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vw 206 (424)
....|+++++.+++. ....|.||...+ ..++..+.+|..++..+.+.|... .++.+++.||.|++|
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~T----------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTAT----------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecch----------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 346788888755543 356899999988 455668999999999999988766 467799999999999
Q ss_pred eCCCCCCCCcc---------------------------------------------------------------------
Q 014472 207 DINAAPKNKSL--------------------------------------------------------------------- 217 (424)
Q Consensus 207 d~~~~~~~~~~--------------------------------------------------------------------- 217 (424)
|...+...+.+
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~ 167 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV 167 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence 98765321111
Q ss_pred -------------cce---------e------eeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC-CCCCCCeeE
Q 014472 218 -------------EAM---------Q------IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQS 268 (424)
Q Consensus 218 -------------~~~---------~------~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~ 268 (424)
... . .-..|.-.+++.+++|.++ .+|+|..||.|.+|.--. .........
T Consensus 168 ~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 168 DNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred EcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceE
Confidence 000 0 0012455678899999987 568999999999995433 222334556
Q ss_pred ecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 269 VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 269 ~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
+.-|...|++++|+++|.+ |++|+..|.+.+|.+.+.+ .+-+.--.++|..+.++|++. +.+....|+.|.+....
T Consensus 247 lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EEecccccceeEEecCCce-EeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence 6779999999999999995 8899999999999999843 344455578999999999996 67778889999999887
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
+..............+.. ..+..+-.+.++++|.-+ .++-.+..|.|++||+.+..
T Consensus 323 dl~~k~tIsgi~~~~~~~---k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPST---KTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred chhhhhhccCccCCCccc---cccccccceeEEEcCCCC-ceeecCCCceEEEEeccccc
Confidence 665443332221111111 122344567789999555 46667889999999997653
No 224
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=7.4e-15 Score=135.90 Aligned_cols=272 Identities=20% Similarity=0.381 Sum_probs=199.7
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC--CeeeEEecCCCCc-eEEEE
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST--EGYGLSWSKFKEG-HLLSG 197 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~-~l~s~ 197 (424)
.+.-.+.++++..+|.|+. +|.++.-| +.+-|+... ..+-.-+. |.. .|-.+.|+|.... +-++.
T Consensus 20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p---------~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP---------FTPPRWLH-HITPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCC---------CCCceeee-ccCcchhcceecccCCCCceeEEe
Confidence 3455778899999998874 66667665 666787762 22333332 333 4677888876321 33333
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 277 (424)
.....-.+|++..... .. .-..+.+|+..|+++.|+|+.+.++|+++.|..+..||+|+... ++..+..-.....
T Consensus 88 ts~qkaiiwnlA~ss~-~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSS-NA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAAS 162 (1081)
T ss_pred cCcchhhhhhhhcCCc-cc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCc
Confidence 4445566899865432 11 22346789999999999999999999999999999999999764 6666666667788
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPE 357 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 357 (424)
.++|+...++++| .+....|.+||+|..+.++..+++|-..|..++|.......+.+++.|++|++||......+....
T Consensus 163 qVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 9999998887554 455678999999998999999999999999999987665678899999999999987643221000
Q ss_pred cc--------------------------------------C---CCCCeeeEEEcCCCCCcceEEeCCC---------CC
Q 014472 358 DA--------------------------------------E---DGPPELLFIHGGHTSKISDFSWNPC---------ED 387 (424)
Q Consensus 358 ~~--------------------------------------~---~~~~~~~~~~~~h~~~v~~~~~~~~---------~~ 387 (424)
.. + ...++.+..+.||...|..+.|-.. ..
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 00 0 1124567888899999988888543 23
Q ss_pred cEEEEEeCCCcEEEEecCCCCCC
Q 014472 388 WVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 388 ~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+.|+|-+.|..+++|.+...+++
T Consensus 322 fQLVTWSkD~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDSQIQR 344 (1081)
T ss_pred eeEEEeecCCceEeeeccHHHHH
Confidence 57999999999999999987664
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=129.50 Aligned_cols=195 Identities=17% Similarity=0.301 Sum_probs=146.1
Q ss_pred EEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE--EEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC----
Q 014472 141 IATKTVSAEVYVFDYSKHPSKPPLDGACSPDL--RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---- 214 (424)
Q Consensus 141 latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---- 214 (424)
+..|-..|.|++.|..... ...+. ...-.+..|+++.|-|.+...++++-.+|.+.++|....-..
T Consensus 188 llIGf~tGqvq~idp~~~~--------~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE--------VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred eEEeeccCceEEecchhhH--------HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 5557778889988865410 01000 111134689999999998888899999999999976421100
Q ss_pred ------------------CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 215 ------------------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 215 ------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
..-.++..+..-.+.|+.++|+||++ .+|+.+.||.++|||..+.+. +..++..-+..
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eL---lg~mkSYFGGL 335 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQEL---LGVMKSYFGGL 335 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHH---HHHHHhhccce
Confidence 00022333444456899999999987 568999999999999998664 44445556789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCC----------------------------
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK---------------------------- 328 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~---------------------------- 328 (424)
.|++|+|||+ +|++|+.|-.|.||.+.. ++.+..-++|+++|+.++|.|-
T Consensus 336 LCvcWSPDGK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 336 LCVCWSPDGK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred EEEEEcCCcc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 9999999999 599999999999999987 7889999999999999999831
Q ss_pred -------C------------CcEEEEEeCCCeEEEeeCCC
Q 014472 329 -------N------------ETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 329 -------~------------~~~l~s~~~dg~i~iwd~~~ 349 (424)
+ .+.|.+.+.|-.+++||+..
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 0 13577888999999999864
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.1e-14 Score=120.12 Aligned_cols=212 Identities=16% Similarity=0.218 Sum_probs=158.7
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC--Cc
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD--AQ 202 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~ 202 (424)
.+.|..++... + .|++|-.+|.+.+|........ ..+...+..+ ..+..+.-++..+.++++|+.. ..
T Consensus 105 ~~~I~gl~~~d-g--~Litc~~sG~l~~~~~k~~d~h------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 105 TKSIKGLKLAD-G--TLITCVSSGNLQVRHDKSGDLH------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred cccccchhhcC-C--EEEEEecCCcEEEEeccCCccc------cccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 34555555542 3 5778889999999998852211 2334444433 4577788888888778889988 88
Q ss_pred EEEEeCCCCCCCCcccceee-eec--CCcceeeEEeeCC-CCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 203 ICLWDINAAPKNKSLEAMQI-FKV--HEGVVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~-~~~--~~~~v~~i~~~~~-~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
+.+||+++.......+.+.. .-+ -.-.++++.|.+. -.+.||+++.-+.+++||++.+. +|+..+..-..++++
T Consensus 175 lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISS 252 (412)
T ss_pred eeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCccee
Confidence 99999987633221111110 001 1234667888775 14578899999999999999654 588888878899999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+...|.+. ++++|..-|.+..||+|........+.+-.+.|.++..+|.++ +||+|+-|..++|+|+.+.
T Consensus 253 ~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 253 TGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eeecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence 99999887 6999999999999999985555555888899999999999986 8999999999999999884
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.4e-13 Score=127.54 Aligned_cols=221 Identities=13% Similarity=0.132 Sum_probs=138.8
Q ss_pred ccCCceeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
.|...+...+|+|++. .||..+. ...|++|++.. +. ...+..+.+...+++|+|++..++++.+.
T Consensus 201 ~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~--------g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 201 RSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLAT--------GQ---RELVASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred cCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCC--------CC---EEEeccCCCCccCceECCCCCEEEEEEeC
Confidence 4667889999999998 4554442 34799999876 11 22333344455688999999865566666
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCe--EEEEECCCCCCCCCeeEecccCCC
Q 014472 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+| .|.+||+.++.. ..+..+.......+|+|+++.++.+...+|. |+++|+.+++. ..+..+...
T Consensus 269 ~g~~~Iy~~d~~~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt~~g~~ 337 (433)
T PRK04922 269 DGNPEIYVMDLGSRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLTFQGNY 337 (433)
T ss_pred CCCceEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEeecCCCC
Confidence 66 589999976532 2233344455678999999877655545555 66667765442 222223344
Q ss_pred eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCCC
Q 014472 276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRID 351 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~ 351 (424)
...++|+|+|+.++++...++ .|.+||+.+ +... .+. +........|+|+++.++++....+ .|.++++...
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~- 413 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR- 413 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 557899999996544443333 699999976 3332 333 2334567899999986555555433 4666666431
Q ss_pred cccCCCccCCCCCeeeEEEcCCCCCcceEEeCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP 384 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 384 (424)
....+..+.+.+...+|+|
T Consensus 414 --------------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --------------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --------------ceEEcccCCCCCCCCccCC
Confidence 1233334445677788876
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.61 E-value=5.1e-14 Score=116.99 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=163.8
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecC---CCCceEEEEeCCCcEEEEeCCCCCCCCcccceee
Q 014472 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI 222 (424)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 222 (424)
.|.+.+|++.... ..+...++ .....+..+.|.. ++.-.++-+...|.|.++..........+.++..
T Consensus 45 ~Gkl~Lys~~d~~--------~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 45 SGKLHLYSLEDMK--------LSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred ccceEEEeecccc--------cCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 4667777776622 22222222 2334566666753 2222467777889999998765443333333222
Q ss_pred eecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014472 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 223 ~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 302 (424)
.........++.|++.+..++ ++-.+|.+.+-+..... .+.++..+.|.-.+...+|+...++++.+|+.|+.+..||
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~-vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIF-VSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred hhhhheeeeEEEeeccCceEE-EEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 222222456788898887654 77788988866665544 3456678899999999999998889999999999999999
Q ss_pred CCCCCCccee-ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEE
Q 014472 303 LRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 303 ~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
+|.++..+.. .+.|...|.++.-+|..+.++++|+.|-.|++||.++..+. ++.-. -.+.|+.+.
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-------------l~~~~-v~GGVWRi~ 260 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-------------LFKAK-VGGGVWRIK 260 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------------cccCc-cccceEEEE
Confidence 9965655544 56789999999999988889999999999999999987542 22211 136799999
Q ss_pred eCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 382 WNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 382 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
++|.-...+..++.-+-.+|-+++.+..+
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccc
Confidence 99965433333344444777777776554
No 229
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=3.5e-15 Score=139.72 Aligned_cols=242 Identities=19% Similarity=0.267 Sum_probs=177.8
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
-+|.+.|+.++.+..+. ++|+++.|..|++|.+.. +.++..+.+|++.|++|+|+|- .+.+.||
T Consensus 229 rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~----------~~pvsvLrghtgavtaiafsP~-----~sss~dg 292 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPD----------GAPVSVLRGHTGAVTAIAFSPR-----ASSSDDG 292 (1113)
T ss_pred CCCccccchhccchhhh-hhhhcccCceEEEEecCC----------CchHHHHhccccceeeeccCcc-----ccCCCCC
Confidence 37999999999998775 899999999999999988 6788889999999999999983 3778999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
++++||.+-......-.+.. +. ....+.++.|...+. -+++++.|+.-..|.+..... +...+.-+.+
T Consensus 293 t~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~---------~~~~lif~t~ 360 (1113)
T KOG0644|consen 293 TCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFENNGD-RFLTGSRDGEARNHEFEQLAW---------RSNLLIFVTR 360 (1113)
T ss_pred ceEeccccccccccCCCCCC-cc-cccceeeeecccccc-ccccccCCcccccchhhHhhh---------hccceEEEec
Confidence 99999987221111111111 11 234566667766665 456999999888887654221 2222222222
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAED 361 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 361 (424)
+.+-..+.+++-.+-.+++|++-. +...+.+.+|...+..+.++|.++.+..+++.||...|||+-.+..
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--------- 430 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--------- 430 (1113)
T ss_pred cccccccceeeeeeeEeeeeeccc-chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---------
Confidence 223333566777788899999998 7888899999999999999999988888999999999999987532
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
...+. .+|. .+.+-+|+++|. -++....-|.++|.....+
T Consensus 431 ---ik~y~-~gh~-kl~d~kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 431 ---IKHYF-IGHG-KLVDGKFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ---ceeee-cccc-eeeccccCCCCc-eEecCCCCCceEEeccCCC
Confidence 22222 4554 477789999999 4666677788888776544
No 230
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.8e-14 Score=127.31 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=190.5
Q ss_pred eccCCceeEEEecCC-CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 122 INHDGEVNRARYMPQ-NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~-~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
-+|...|....|.|. +..-+++++.||.|++=.+... +.......+..|.+.|.-++.-|..+.-|.+++.|
T Consensus 182 SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD 254 (559)
T KOG1334|consen 182 SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED 254 (559)
T ss_pred cccccchhhhhccCCCCCcCceeccccCceeeeeeccc-------cceecceecccccCccceeeecCCCCCcccccccc
Confidence 368888888889884 3346889999999999877651 23344566778999999999999988889999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCc---ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC---CCeeEe-----
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEG---VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS---KPVQSV----- 269 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~---~~~~~~----- 269 (424)
+.+.-+|++.......+.+ -..+.. ...+++.+|...+.||+++.|..+++||.|.-... ..+..+
T Consensus 255 ~~v~~~Dlr~~~pa~~~~c---r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl 331 (559)
T KOG1334|consen 255 AVVFHIDLRQDVPAEKFVC---READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL 331 (559)
T ss_pred cceeeeeeccCCccceeee---eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc
Confidence 9999999987754333321 122233 67889999999999999999999999999863311 112222
Q ss_pred -cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC-C----------Ccc-eeecCCCC--CEEEEEEc-CCCCcEE
Q 014472 270 -VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI-S----------TAL-HTFDSHKE--EVFQVGWN-PKNETIL 333 (424)
Q Consensus 270 -~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~----------~~~-~~~~~~~~--~v~~~~~s-p~~~~~l 333 (424)
......|++++|+.++.-+|| .-.|-.|++|.-... + ..+ ..+++|.. .|..+-|- |... ++
T Consensus 332 ~~d~~v~ITgl~Ysh~~sElLa-SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yV 409 (559)
T KOG1334|consen 332 VEDDPVNITGLVYSHDGSELLA-SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YV 409 (559)
T ss_pred cccCcccceeEEecCCccceee-eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eE
Confidence 123457999999977765554 456778999943221 1 112 23677764 56777664 5554 79
Q ss_pred EEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
++|+.=|.|.||+-.++ +++..+.+....|+++.=+|.-+ +|||.|-|.-|+||.+.+.
T Consensus 410 vSGSDCGhIFiW~K~t~--------------eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTG--------------EIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred EecCccceEEEEecchh--------------HHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCcc
Confidence 99999999999998875 55555666666899999999999 8999999999999998543
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.9e-13 Score=124.55 Aligned_cols=222 Identities=8% Similarity=0.055 Sum_probs=138.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEe--cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKT--VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+...+...+|+|+|+.++.+.. .+..|++|++.. +... .+....+.+..++|+|+|..++++.+.+
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--------G~~~---~l~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--------GAVR---QVASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--------CCeE---EccCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 45668899999999985444332 245799999876 2222 2222333455789999998544455555
Q ss_pred C--cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE--EECCCCCCCCCeeEecccCCCe
Q 014472 201 A--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI--WDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 201 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~v 276 (424)
| .|.+||+.++.. ..+..+...+....|+|+++.++.+...++...| +|+.++. ...+.......
T Consensus 265 g~~~I~~~d~~tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~~ 333 (429)
T PRK03629 265 GSLNLYVMDLASGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQN 333 (429)
T ss_pred CCcEEEEEECCCCCE-------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCCc
Confidence 5 488899876532 2223344567889999999877655444454444 4665543 23333344456
Q ss_pred eEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe---EEEeeCCCCC
Q 014472 277 NCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR---LMVWDLSRID 351 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~ 351 (424)
....|+|+|+.+++++..++ .|.+||+.+ +. ...+.. ........|+|+|.. |+.++.++. +.++++..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~-~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G-- 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD-TFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG-- 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCC-CCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC--
Confidence 77899999996555554443 588899876 33 233332 223456889999975 555555543 66667643
Q ss_pred cccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+.+|.+.+...+|+|-
T Consensus 408 -------------~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 -------------RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred -------------CCeEECccCCCCcCCcccCCC
Confidence 223444567778889999873
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=2.2e-13 Score=115.61 Aligned_cols=265 Identities=17% Similarity=0.295 Sum_probs=179.2
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CCeeeEEecCCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKFK 190 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~~ 190 (424)
.-.+-|.++.|...|. +||||..+|.|.+|.-....+ +.......++.|. ..|..+.|.+++
T Consensus 23 teadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred chhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 3456788999999887 899999999999998765322 1112233344443 358899999875
Q ss_pred C-ceEEEEeCCCcEEEEeCCCCCCCC---------------cc--------------cceeee-ecCCcceeeEEeeCCC
Q 014472 191 E-GHLLSGSDDAQICLWDINAAPKNK---------------SL--------------EAMQIF-KVHEGVVEDVAWHLRH 239 (424)
Q Consensus 191 ~-~~l~s~~~dg~i~vwd~~~~~~~~---------------~~--------------~~~~~~-~~~~~~v~~i~~~~~~ 239 (424)
. ..++...+|.+|++|.+....... .+ .+.+.+ ..|.-.|++|.++.+.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 4 257778899999999986543211 00 111222 3578889999999998
Q ss_pred CcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc-----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc---e
Q 014472 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL---H 311 (424)
Q Consensus 240 ~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~---~ 311 (424)
..++ + .+|-.|.+|++.-....-.+.-++.+ ..-|++..|+|..-++|+-.+..|+|++-|+|...-+- .
T Consensus 177 Et~l-S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 177 ETFL-S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred ceEe-e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 7654 4 47888999998754432223333333 24588999999887889999999999999999522111 0
Q ss_pred ee------------cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC-----
Q 014472 312 TF------------DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT----- 374 (424)
Q Consensus 312 ~~------------~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 374 (424)
.+ ..--..|..+.|+++|+ ++++-.. -+|++||+.... .++.+..-|.
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~-------------~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEA-------------KPVETYPVHEYLRSK 319 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccC-------------CcceEEeehHhHHHH
Confidence 11 11124688999999997 5555433 479999997643 2222222221
Q ss_pred -------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 375 -------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 375 -------~~v---~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
..| ..++|+-++. .++||+..+.++++++..|..++
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCccee
Confidence 223 3478999988 69999999999999988776544
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4.6e-13 Score=126.23 Aligned_cols=227 Identities=14% Similarity=0.166 Sum_probs=137.5
Q ss_pred eccCCceeEEEecCCCCcEEEEEec-C--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTV-S--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..+.+.+.+.+|+|+++. ||..+. + ..|++||+.. + . ...+....+.+.+.+|+|++..++++.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~-la~~s~~~~~~~I~~~dl~~--------g--~-~~~l~~~~g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTK-LAYVSFESKKPVVYVHDLAT--------G--R-RRVVANFKGSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred ccCCCCcccceEcCCCCE-EEEEEccCCCcEEEEEECCC--------C--C-EEEeecCCCCccceEECCCCCEEEEEEc
Confidence 357788999999999974 554442 2 4699999976 2 1 2233334455678999999986555778
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.+|...||.++.... ....+..+........|+|+++.++.+...+|...||.+..... ....+.........
T Consensus 260 ~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~~~~ 332 (427)
T PRK02889 260 RDGNSQIYTVNADGS-----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSYNTS 332 (427)
T ss_pred cCCCceEEEEECCCC-----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCCcCc
Confidence 888877776543211 12223334455667899999987765554556666665542211 12222222334456
Q ss_pred EEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEeeCCCCCccc
Q 014472 279 LAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDEEQ 354 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~~~ 354 (424)
.+|+|+|+++++++...+ .|.+||+.. +.. ..+.. ........|+|+++.++++....|. +.+.++..
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g----- 404 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG----- 404 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----
Confidence 889999996444433333 699999986 332 23332 2345678999999876666655554 33434422
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+..+.+.+...+|+|-
T Consensus 405 ----------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 ----------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ----------CceEEeecCCCCCCCCccCCC
Confidence 222333345566778888874
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.2e-12 Score=120.30 Aligned_cols=201 Identities=12% Similarity=0.120 Sum_probs=132.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEe---cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKT---VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
.|.+.+...+|+|+++. ||..+ .+..|++||+.. + ....+..+.+.+.+.+|+|+|..++++.+.
T Consensus 199 ~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~--------g---~~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLET--------G---QRELVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred cCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCC--------C---cEEEeecCCCcccCcEECCCCCEEEEEEec
Confidence 67789999999999985 44443 246899999976 1 123455566777899999999865567776
Q ss_pred CCc--EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCC
Q 014472 200 DAQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++. |.+||+.++.. ..+..+........|+|+++.++.+...+| .|+++|+..+. ...+..+...
T Consensus 267 ~g~~~Iy~~d~~~~~~-------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~~ 335 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGGR 335 (435)
T ss_pred CCCceEEEEECCCCce-------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCCc
Confidence 666 66678766522 223345556678899999987764443444 68888876644 2333334556
Q ss_pred eeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC-----eEEEeeCC
Q 014472 276 VNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR-----RLMVWDLS 348 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-----~i~iwd~~ 348 (424)
+....|+|+|+.++++.... ..|.+||+.. + ....+. ....+....|+|+|+.+++++...+ .+.++|+.
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 77789999999654444333 3688888754 2 223332 2335778999999986555554332 46777775
Q ss_pred C
Q 014472 349 R 349 (424)
Q Consensus 349 ~ 349 (424)
.
T Consensus 413 g 413 (435)
T PRK05137 413 G 413 (435)
T ss_pred C
Confidence 4
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=5.6e-15 Score=129.75 Aligned_cols=244 Identities=18% Similarity=0.288 Sum_probs=176.4
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
++...+.-...|..+.|..+.. ++|++- ...++|||-.. ..+..+..| ..|..|.|.|..- +|++
T Consensus 162 ~L~~Ei~v~Etv~Dv~~LHneq-~~AVAQ-K~y~yvYD~~G-----------tElHClk~~-~~v~rLeFLPyHf-LL~~ 226 (545)
T KOG1272|consen 162 KLHFEINVMETVRDVTFLHNEQ-FFAVAQ-KKYVYVYDNNG-----------TELHCLKRH-IRVARLEFLPYHF-LLVA 226 (545)
T ss_pred eeeeeeehhhhhhhhhhhcchH-HHHhhh-hceEEEecCCC-----------cEEeehhhc-Cchhhhcccchhh-eeee
Confidence 4555666778899999987664 788764 57899999765 334455544 4688999999765 7899
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
++..|.++.-|+..++.. ..+....+.+..++-+|-+. ++-.|...|+|.+|.....+ ++..+..|.++|
T Consensus 227 ~~~~G~L~Y~DVS~GklV------a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske---PLvKiLcH~g~V 296 (545)
T KOG1272|consen 227 ASEAGFLKYQDVSTGKLV------ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE---PLVKILCHRGPV 296 (545)
T ss_pred cccCCceEEEeechhhhh------HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc---hHHHHHhcCCCc
Confidence 999999999999988543 33444567888888889875 77799999999999988755 577778899999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+|++++.|. ++||.+.|..++|||+|+..+ +.++.. ..+...+++|..| +| +++....+.||.=......
T Consensus 297 ~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~Sqkg--lL-A~~~G~~v~iw~d~~~~s~--- 367 (545)
T KOG1272|consen 297 SSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQKG--LL-ALSYGDHVQIWKDALKGSG--- 367 (545)
T ss_pred ceEEECCCCc-EEeecccccceeEeeeccccc-cceeec-CCCcccccccccc--ce-eeecCCeeeeehhhhcCCC---
Confidence 9999999998 599999999999999999654 444443 4567889998876 45 4455557999953221100
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
....+...+. ..+.|.++.|.|-.. +|..|-..|.-.|
T Consensus 368 -----~~~~pYm~H~-~~~~V~~l~FcP~ED-vLGIGH~~G~tsi 405 (545)
T KOG1272|consen 368 -----HGETPYMNHR-CGGPVEDLRFCPYED-VLGIGHAGGITSI 405 (545)
T ss_pred -----CCCcchhhhc-cCcccccceeccHHH-eeeccccCCceeE
Confidence 0011122222 134799999999877 5666555554333
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.9e-12 Score=107.84 Aligned_cols=179 Identities=18% Similarity=0.290 Sum_probs=127.3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeec--
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKV-- 225 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-- 225 (424)
..|.|||-.. ..++..+. ...+|.++.+.++ .|++.- .+.|.||...+... .+..+..
T Consensus 75 NkviIWDD~k----------~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k-----~l~~~et~~ 134 (346)
T KOG2111|consen 75 NKVIIWDDLK----------ERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPK-----LLHVIETRS 134 (346)
T ss_pred ceEEEEeccc----------CcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChh-----heeeeeccc
Confidence 5899999433 34455554 6788999999863 455554 57899999874321 1222221
Q ss_pred CCcceeeEEeeCCCCcEEEE-EeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCc-EEEEEC
Q 014472 226 HEGVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-VKLFDL 303 (424)
Q Consensus 226 ~~~~v~~i~~~~~~~~~~~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-i~iwd~ 303 (424)
....+.+++-+ .+..++|. |-.-|.|+|-|+...... +...+.+|.+.|.|++.+.+|. ++||++..|+ |||||.
T Consensus 135 NPkGlC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 135 NPKGLCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDT 211 (346)
T ss_pred CCCceEeecCC-CCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEc
Confidence 12223333222 22334433 345699999999876532 3456789999999999999997 7999999996 899999
Q ss_pred CCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 304 RKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 304 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+ +.++..+.- ....|.+++|||+.. +||++|..|+++||.++...
T Consensus 212 ~~-g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 212 ED-GTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CC-CcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCC
Confidence 98 777777763 346899999999995 89999999999999997643
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.58 E-value=2.4e-13 Score=113.02 Aligned_cols=153 Identities=17% Similarity=0.352 Sum_probs=104.0
Q ss_pred eeEEecCCCCceEEEEeC---------CCcEEEEeCCCCCCCCcccceeeee-cCCcceeeEEeeCCCCcEEEE-EeCCC
Q 014472 182 YGLSWSKFKEGHLLSGSD---------DAQICLWDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGS-VGDDQ 250 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~s-~~~dg 250 (424)
..+.|++.|..+++.... -|...+|.++.... +...+. ...++|.+++|+|++..++++ |..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-----ccceeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 468899999866555552 23466666644322 112222 134579999999999876433 44678
Q ss_pred eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 251 YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
.|.+||++. .++..+ +...++.|.|+|+|++ |++|+. .|.|.+||.++ .+.+..... ..++.++|+|
T Consensus 84 ~v~lyd~~~----~~i~~~--~~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~-~~~i~~~~~--~~~t~~~WsP 153 (194)
T PF08662_consen 84 KVTLYDVKG----KKIFSF--GTQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRK-KKKISTFEH--SDATDVEWSP 153 (194)
T ss_pred ccEEEcCcc----cEeEee--cCCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCC-CEEeecccc--CcEEEEEEcC
Confidence 999999973 234444 3567899999999995 555553 46799999997 566665543 3578999999
Q ss_pred CCCcEEEEEe-----CCCeEEEeeCCC
Q 014472 328 KNETILASCC-----LGRRLMVWDLSR 349 (424)
Q Consensus 328 ~~~~~l~s~~-----~dg~i~iwd~~~ 349 (424)
+|+.++.+.+ .|+.++||+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecC
Confidence 9985444433 277899999853
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=5e-13 Score=130.47 Aligned_cols=225 Identities=18% Similarity=0.194 Sum_probs=155.3
Q ss_pred CCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCcceeeEEeeCCCCcEEEEEe
Q 014472 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG 247 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~ 247 (424)
..+..+..|...+..++.++....+|++||.||+|++|+.+.-... ...+...++..-...+.++...+.+. -+|.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEc
Confidence 4455666788889999998877569999999999999999765433 34444455555577888888888876 467889
Q ss_pred CCCeEEEEECCCCCCCCC--ee--Eeccc-CCCeeEE-EecCCCC-eEEEEEeCCCcEEEEECCCCCCcceee--cCCCC
Q 014472 248 DDQYLLIWDLRTPSVSKP--VQ--SVVAH-QSEVNCL-AFNPFNE-WILATGSTDKTVKLFDLRKISTALHTF--DSHKE 318 (424)
Q Consensus 248 ~dg~i~i~d~~~~~~~~~--~~--~~~~~-~~~v~~i-~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~ 318 (424)
.||.|++.++......+. .+ ....+ .+.+.++ +|..... ..++.+..-+.|..||+|+ ...+.++ ....+
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~-~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM-RHDAWRLKNQLRHG 1196 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh-hhhHHhhhcCcccc
Confidence 999999999986321111 11 11111 2233333 3433322 3788888899999999998 3333333 33467
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC---CcEEEEEe-
Q 014472 319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE---DWVISSVA- 394 (424)
Q Consensus 319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~- 394 (424)
.|++++.+|.+. .++.|+..|.+.+||++-... ..-.. .++..+|..+..+|-. ...+++++
T Consensus 1197 ~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~------------i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVP------------ILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred ceeEEEecCCce-EEEEecCCceEEEEEeecCce------------eeccc-CcccCCcceEEeeccCCCCceEEEeccc
Confidence 899999999996 799999999999999997532 11122 2344678888877653 34444544
Q ss_pred CCCcEEEEecCCCCC
Q 014472 395 EDNILQIWQMAENIY 409 (424)
Q Consensus 395 ~d~~i~iw~~~~~~~ 409 (424)
..+.|.+|++.+|..
T Consensus 1263 ~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLR 1277 (1431)
T ss_pred CCCceeeeecccCcc
Confidence 678899999998843
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=3.5e-14 Score=119.66 Aligned_cols=221 Identities=15% Similarity=0.240 Sum_probs=150.5
Q ss_pred EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014472 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 131 i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 210 (424)
.+|+|+|+ ++|+++.. .+.|-|..+ .+ +..+...-..|.-+.|..+....|.....++.|.+|++..
T Consensus 14 c~fSp~g~-yiAs~~~y-rlviRd~~t----------lq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q 80 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRY-RLVIRDSET----------LQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ 80 (447)
T ss_pred eeECCCCC-eeeeeeee-EEEEeccch----------hh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec
Confidence 68999886 89987754 788888766 11 1112223456888999988776677778899999999976
Q ss_pred CCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEE
Q 014472 211 APKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILA 290 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 290 (424)
..- ...+.....++..++|+|+|++++.+..-+-.|.+|.+.+.+. ..++-.+..+..++|+|+|++ .+
T Consensus 81 pew------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~----~~~~~pK~~~kg~~f~~dg~f-~a 149 (447)
T KOG4497|consen 81 PEW------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG----YLLPHPKTNVKGYAFHPDGQF-CA 149 (447)
T ss_pred cee------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee----EEecccccCceeEEECCCCce-ee
Confidence 532 2334456788999999999999998999999999999988653 223333556788999999984 55
Q ss_pred EEeCCCcEEEEECCC--CCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeE
Q 014472 291 TGSTDKTVKLFDLRK--ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368 (424)
Q Consensus 291 ~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 368 (424)
..+.-.....+.+.. .-..+..+...+-..+.+.|+|+|. .|| +||---.- ....
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~-~la---------Vwd~~Ley-------------kv~a 206 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN-WLA---------VWDNVLEY-------------KVYA 206 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc-EEE---------Eecchhhh-------------eeee
Confidence 554321111111111 0133455555566788999999996 343 45543210 1111
Q ss_pred EEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE
Q 014472 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 401 (424)
-.. .-.+..++|+|.++ +|+.|+.|+.+||
T Consensus 207 Ye~--~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 207 YER--GLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred eee--ccceeEEEeccccc-eEEeeccchhhhh
Confidence 111 23588899999999 8999999999987
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=1.1e-12 Score=111.53 Aligned_cols=217 Identities=17% Similarity=0.334 Sum_probs=154.6
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
..+|.+.|++...-|..+ -+.+.+.|.+++||--... ++..+.. ......+++++.+.+... .|++|-..
T Consensus 20 ~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds-------~q~wpsI-~~~mP~~~~~~~y~~e~~-~L~vg~~n 89 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDS-------GQYWPSI-YHYMPSPCSAMEYVSESR-RLYVGQDN 89 (404)
T ss_pred hcCchhhhhhheeccCCC-CeEEccccceeeeEEeccc-------cccCchh-hhhCCCCceEeeeeccce-EEEEEEec
Confidence 346888899888888666 4777899999999975541 2222221 122456788999988665 79999999
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC--------------------
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP-------------------- 260 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~-------------------- 260 (424)
|++.-+.+...- .+...++.+..|...+..+-|+-....++ +.+.|..+.-.-.+.+
T Consensus 90 gtvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~~~e~V~-s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 90 GTVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSLTHEWVL-STGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL 166 (404)
T ss_pred ceEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecCCceeEE-EeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence 999988775431 22234555666777887777765554333 4444443322111111
Q ss_pred ------------------CCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEE
Q 014472 261 ------------------SVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 261 ------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 322 (424)
....++.++.+|...+++++|.|... +|.+|..|..+.+||+--.........+|...|..
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA 245 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence 11245677889999999999999665 79999999999999998655667788899999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 323 VGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+...+.-. .|.+++.||.|.+|+++....
T Consensus 246 l~~~~~t~-~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 246 LSYAQHTR-QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhe-eeeeccCCCeEEEEeccceee
Confidence 98888775 588999999999999986543
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=2.7e-13 Score=115.08 Aligned_cols=290 Identities=19% Similarity=0.320 Sum_probs=184.7
Q ss_pred CCCCCCCCcEEEEEEeccCCceeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCC---------------------
Q 014472 107 GGFGCANGKVQIIQQINHDGEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPL--------------------- 164 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~p~~-~~~latg~~dg~v~iwd~~~~~~~~~~--------------------- 164 (424)
..+.+..+.+..++.+.-...|+.++|.+++ ...+...+.|.+|++|.+.........
T Consensus 66 t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~ 145 (433)
T KOG1354|consen 66 TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEG 145 (433)
T ss_pred eeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeec
Confidence 3444456667777778888899999999864 335556678999999998764332210
Q ss_pred ----CCCCCCcEE-EecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee--eeecCCcceeeEEeeC
Q 014472 165 ----DGACSPDLR-LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ--IFKVHEGVVEDVAWHL 237 (424)
Q Consensus 165 ----~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~ 237 (424)
.-...+.+. ..+|.--|.++.++.+.. .++++ .|-.|.+|++.-......+.-++ .+..-..-|++..|+|
T Consensus 146 ~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 146 RHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred cccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 000011111 135777899999999887 35554 57899999997543322111111 0111234688899999
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCCCC---Ce----------eEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECC
Q 014472 238 RHEYLFGSVGDDQYLLIWDLRTPSVSK---PV----------QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLR 304 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~---~~----------~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~ 304 (424)
...++|+-.+..|+|++.|+|+....- .+ .-+..--+.|..+.|++.|++ +++-+. -+|++||+.
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-ilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRDY-LTVKLWDLN 301 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEecc-ceeEEEecc
Confidence 999999999999999999999542110 00 011122346788999999985 555432 589999998
Q ss_pred CCCCcceeecCCCC------------C---EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc--CCCCC---
Q 014472 305 KISTALHTFDSHKE------------E---VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA--EDGPP--- 364 (424)
Q Consensus 305 ~~~~~~~~~~~~~~------------~---v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~--- 364 (424)
...+|+.+++.|.. . -..++|+.++. .++||+.....++|++..+......... ...++
T Consensus 302 me~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~ 380 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV 380 (433)
T ss_pred ccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence 77888888887642 2 25688998885 7899999999999997665432211110 00001
Q ss_pred -eeeEEEc-C-------------CCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 365 -ELLFIHG-G-------------HTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 365 -~~~~~~~-~-------------h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.+-.+.. | ....+...+|+|... .+|.+.. +.+.||.
T Consensus 381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en-~ia~aat-nnlyif~ 432 (433)
T KOG1354|consen 381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN-SIAVAAT-NNLYIFQ 432 (433)
T ss_pred ccceeeecCCCccccccccchhhhhhHHHhhccCCccc-eeeeeec-CceEEec
Confidence 1111111 1 122467789999998 6777664 4466653
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=2.8e-12 Score=108.40 Aligned_cols=247 Identities=16% Similarity=0.250 Sum_probs=160.6
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
+.--..|.-+.|..+..++|.....++.|.+|++.. ..-...+......+.+++|+|+|..+|.+...|-
T Consensus 45 f~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 45 FLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred HHHHHHhhheeeeccceeeeeeeeccceEEEEEeec----------ceeEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence 333456777889988888888889999999999987 2223456667788999999999988888899999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe----------------------------------
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---------------------------------- 247 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~---------------------------------- 247 (424)
.|.+|.+.+.... .+.-....+..++|+|+|++. +.++
T Consensus 115 riTVWSL~t~~~~-------~~~~pK~~~kg~~f~~dg~f~-ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 115 RITVWSLNTQKGY-------LLPHPKTNVKGYAFHPDGQFC-AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred EEEEEEeccceeE-------EecccccCceeEEECCCCcee-eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 9999999875321 111122345667777777633 2211
Q ss_pred --CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC------------------
Q 014472 248 --DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS------------------ 307 (424)
Q Consensus 248 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~------------------ 307 (424)
++..+.+||.--.- .+..+ .-.-.+..++|+|.++ +|++|+.|+.+++.+--+.+
T Consensus 187 sPdg~~laVwd~~Ley---kv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEY---KVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred CCCCcEEEEecchhhh---eeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 12223444432111 11111 1235788999999888 79999999998885421100
Q ss_pred -----------------------------------------------CcceeecCCCCCEEEEEEcCCCCcEEEEEeC--
Q 014472 308 -----------------------------------------------TALHTFDSHKEEVFQVGWNPKNETILASCCL-- 338 (424)
Q Consensus 308 -----------------------------------------------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-- 338 (424)
+|...+......+.-++|+++.. ++++-..
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~ 340 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKY 340 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCC
Confidence 00011112234678899999984 5666543
Q ss_pred CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
-..+-+||++..+. +..--...+|..+.|+|..+.++++.+ ...+++|.++...
T Consensus 341 PnalW~Wdlq~l~l---------------~avLiQk~piraf~WdP~~prL~vctg-~srLY~W~psg~~ 394 (447)
T KOG4497|consen 341 PNALWLWDLQNLKL---------------HAVLIQKHPIRAFEWDPGRPRLVVCTG-KSRLYFWAPSGPR 394 (447)
T ss_pred CceEEEEechhhhh---------------hhhhhhccceeEEEeCCCCceEEEEcC-CceEEEEcCCCce
Confidence 24689999987431 111223457999999999986555544 5569999987643
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=1.5e-11 Score=112.60 Aligned_cols=265 Identities=11% Similarity=0.122 Sum_probs=155.3
Q ss_pred EEEEEEeccCCce-eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 116 VQIIQQINHDGEV-NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 116 ~~~~~~~~h~~~v-~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
.+++.++...+.+ ..+.|+|+++ ++.+++.||.|.++|+.+ .+...++.. .....+++++++|..++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~----------~~~v~~i~~-G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLAT----------GKVVATIKV-GGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTS----------SSEEEEEE--SSEEEEEEE--TTTEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCc----------ccEEEEEec-CCCcceEEEcCCCCEEE
Confidence 3445566655554 4477999998 455567899999999988 455556654 44578899999998444
Q ss_pred EEEeCCCcEEEEeCCCCCCCCcccceee-eecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC
Q 014472 195 LSGSDDAQICLWDINAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 195 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 273 (424)
+++...+.+.++|.++.+....+..... .......+..|..+|..+.++++.-+.+.|-+.|...... .........
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~i~~g 171 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTTIKVG 171 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEEEE--
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceeeeccc
Confidence 4556799999999977633222211000 0012356778888888775655556668898889877542 122222345
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCc--------------------------------------------
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTA-------------------------------------------- 309 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-------------------------------------------- 309 (424)
.......|+|++++++++...+..|.++|..+....
T Consensus 172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v 251 (369)
T PF02239_consen 172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPV 251 (369)
T ss_dssp TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TT
T ss_pred ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcc
Confidence 677889999999987777677778888887652100
Q ss_pred ----------ceeecCCCCCEEEEEEcCCCCcEEEE---EeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcC-CCC
Q 014472 310 ----------LHTFDSHKEEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-HTS 375 (424)
Q Consensus 310 ----------~~~~~~~~~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 375 (424)
++++.....+ .-+.-+|+++++.+. +...+.|.++|..+. +....+.. ...
T Consensus 252 ~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------------~~~~~i~~~~~~ 316 (369)
T PF02239_consen 252 SVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------------KVVKTITPGPGK 316 (369)
T ss_dssp T-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------------EEEE-HHHHHT-
T ss_pred ccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------------ceeEEEeccCCC
Confidence 1112222223 566778998754444 355678999999875 22333221 122
Q ss_pred CcceEEeCCCCCcEEEEEeCCC-cEEEEecCCCCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDN-ILQIWQMAENIY 409 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~ 409 (424)
.+..+.|+++|+.+.+|.-..+ .|.|||..+..+
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 4889999999998888877666 899999988654
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.6e-11 Score=112.92 Aligned_cols=230 Identities=13% Similarity=0.182 Sum_probs=136.3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce--EEEEeCCC--cEEEEeCCCCCCCCcccceeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH--LLSGSDDA--QICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~--l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~ 223 (424)
+.|.+.|... .....+........+-+|+|+|..+ +++...+| .|.+.++.++.. ..+..
T Consensus 165 ~~l~~~d~dG-----------~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~----~~lt~- 228 (428)
T PRK01029 165 GELWSVDYDG-----------QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG----KKILA- 228 (428)
T ss_pred ceEEEEcCCC-----------CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc----eEeec-
Confidence 3566666654 1123344455566778999998752 23454444 477778876532 12222
Q ss_pred ecCCcceeeEEeeCCCCcEEEEEeCCC----eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014472 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 224 ~~~~~~v~~i~~~~~~~~~~~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
..+.....+|+|+|+.++.+...+| .+.+|++..+....+..............+|+|+|+.++++...+|...
T Consensus 229 --~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 --LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPR 306 (428)
T ss_pred --CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence 2334456799999987766554333 3444777653211222222222334567899999997665655667555
Q ss_pred EE--ECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCC
Q 014472 300 LF--DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375 (424)
Q Consensus 300 iw--d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 375 (424)
+| ++...+.....+..+...+....|+|+|+.+++++..+ ..|.+||+..+.. . .+.....
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~------------~---~Lt~~~~ 371 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD------------Y---QLTTSPE 371 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe------------E---EccCCCC
Confidence 55 44322233444544556778899999998655554443 3688999876532 1 1122223
Q ss_pred CcceEEeCCCCCcEEEEEeC--CCcEEEEecCCCCCC
Q 014472 376 KISDFSWNPCEDWVISSVAE--DNILQIWQMAENIYH 410 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~ 410 (424)
.+....|+|+|+.+++++.. ...|.+|++..+...
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 46778999999966655543 346888888777443
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-11 Score=116.87 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=133.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD 200 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 200 (424)
.+...+...+|+|+++.++.+...++ .|++||+.. +.. ..+....+.....+|+|++..++++.+.+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t--------g~~---~~lt~~~g~~~~~~wSPDG~~La~~~~~~ 283 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT--------QVR---EKVTSFPGINGAPRFSPDGKKLALVLSKD 283 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC--------CCe---EEecCCCCCcCCeeECCCCCEEEEEEeCC
Confidence 34567788999999985555444343 588888865 111 22222233345789999998655666777
Q ss_pred Cc--EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCe
Q 014472 201 AQ--ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 201 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|. |.++|+.++.. ..+..+.......+|+|+++.++.+...++ .|.++|+.+++. ..+.......
T Consensus 284 g~~~Iy~~dl~tg~~-------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~Lt~~g~~~ 352 (448)
T PRK04792 284 GQPEIYVVDIATKAL-------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRLTFEGEQN 352 (448)
T ss_pred CCeEEEEEECCCCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEEecCCCCC
Confidence 75 67778765521 223334455677899999988776655454 466667766542 2222222234
Q ss_pred eEEEecCCCCeEEEEEeCCCc--EEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEeeCCCCCc
Q 014472 277 NCLAFNPFNEWILATGSTDKT--VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRIDE 352 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~~ 352 (424)
...+|+|+|+.+++++..++. |.++|+.+ +. ...+... .......|+|+++.++++...++. +.+++...
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G--- 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG--- 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC---
Confidence 457899999976666555554 55567765 32 2233221 122345899999877666666665 55556532
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
.....+..+.+.+...+|+|-
T Consensus 427 ------------~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 ------------RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ------------CceEECcCCCCCcCCCccCCC
Confidence 222333344455777888873
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=3.3e-11 Score=114.12 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=138.3
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeee
Q 014472 148 AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
..|.++|... .....+..+...+...+|+|+++ .|+.++.. ..|.+||+.++.. ..+.
T Consensus 170 ~~l~~~d~~g-----------~~~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~-------~~~~ 230 (417)
T TIGR02800 170 YELQVADYDG-----------ANPQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQR-------EKVA 230 (417)
T ss_pred ceEEEEcCCC-----------CCCEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCE-------EEee
Confidence 3677777654 22345556777788999999998 46655433 4799999976532 1222
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC--cEEE
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKL 300 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~i 300 (424)
.+...+..++|+|+++.++++.+.++ .|++||+.++. ...+..+........|+|+++.++++....+ .|.+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence 34556677899999987776666554 58888988754 2333344455567899999987555554444 5777
Q ss_pred EECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCc
Q 014472 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377 (424)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 377 (424)
+|+.. +. ...+..+...+....|+|++.. ++.++.++ .|.+||+..... +.+ ... ...
T Consensus 307 ~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~------------~~l---~~~-~~~ 367 (417)
T TIGR02800 307 MDADG-GE-VRRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGE------------RVL---TDT-GLD 367 (417)
T ss_pred EECCC-CC-EEEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCe------------EEc---cCC-CCC
Confidence 78775 32 3444445667788999999974 55555554 688888875321 111 111 123
Q ss_pred ceEEeCCCCCcEEEEEeCCC--cEEEEecCC
Q 014472 378 SDFSWNPCEDWVISSVAEDN--ILQIWQMAE 406 (424)
Q Consensus 378 ~~~~~~~~~~~~l~s~~~d~--~i~iw~~~~ 406 (424)
....|+|+++.++++...++ .+.+.+...
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 45689999996555555443 355555443
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.8e-11 Score=112.42 Aligned_cols=219 Identities=14% Similarity=0.145 Sum_probs=133.7
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC--cEEEEeCCCCCCCCcccceeeeecC
Q 014472 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--QICLWDINAAPKNKSLEAMQIFKVH 226 (424)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 226 (424)
.|.++|... .....+..+...+.+..|+|+|..++++...++ .|.+||+.++.. ..+..+
T Consensus 199 ~l~i~d~dG-----------~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~~--- 260 (448)
T PRK04792 199 QLMIADYDG-----------YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----EKVTSF--- 260 (448)
T ss_pred EEEEEeCCC-----------CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----EEecCC---
Confidence 566677655 112345556778899999999985434443343 588889876532 112212
Q ss_pred CcceeeEEeeCCCCcEEEEEeCCCe--EEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCc--EEEEE
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGDDQY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKT--VKLFD 302 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~--i~iwd 302 (424)
.+.....+|+|+++.++++.+.+|. |+++|+.++. ...+..+.......+|+|+++.++++...++. |.++|
T Consensus 261 ~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 261 PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 2334568999999988777777775 7777887654 33444455567788999999976666655554 66667
Q ss_pred CCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEE--eeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceE
Q 014472 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV--WDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF 380 (424)
Q Consensus 303 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 380 (424)
+.. +. ...+..........+|+|+++.++++...++...| +|+..+.. ..+ ... ......
T Consensus 337 l~~-g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------~~l---t~~-~~d~~p 398 (448)
T PRK04792 337 LAS-GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------QVL---TST-RLDESP 398 (448)
T ss_pred CCC-CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe------------EEc---cCC-CCCCCc
Confidence 765 33 23332223334567999999866665555554444 56654321 111 111 112345
Q ss_pred EeCCCCCcEEEEEeCCCc--EEEEecCCC
Q 014472 381 SWNPCEDWVISSVAEDNI--LQIWQMAEN 407 (424)
Q Consensus 381 ~~~~~~~~~l~s~~~d~~--i~iw~~~~~ 407 (424)
.|+|+|+.++++...++. +.+++....
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 899999976666666654 666676443
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=4.3e-13 Score=135.28 Aligned_cols=193 Identities=19% Similarity=0.386 Sum_probs=152.5
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCCCceEEEEeCCC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFKEGHLLSGSDDA 201 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 201 (424)
.|-..|.++.-+|..+ +.+||+.||.|++|.... ...+..++ .....|+.+.|+.+|+ .+..+..||
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~----------~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg 2273 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGH----------GQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDG 2273 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccC----------CCeEEEeeccCcchhhhhhhcccCC-ceeeeccCC
Confidence 3457888899899888 778899999999999876 23333332 2337899999999988 588899999
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe---CCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.+.+|.+.. ++....+.|.....+++|-. .++++++ +++.+.+||..-......+. ..|.+.+++
T Consensus 2274 ~l~l~q~~p-------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2274 DLSLWQASP-------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATV 2341 (2439)
T ss_pred ceeecccCC-------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceE
Confidence 999999862 34566778999999999985 3556664 57889999987655433344 689999999
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
+++-|..+ +|++|+.+|.|++||+|. .+.+++++. ++ .+.+|++|+..|.|+||++.....
T Consensus 2342 l~~~P~~q-llisggr~G~v~l~D~rq-rql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2342 LAYAPKHQ-LLISGGRKGEVCLFDIRQ-RQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EEEcCcce-EEEecCCcCcEEEeehHH-HHHHHHhhh---------hh--hhheeeccCcccceEEEEccccch
Confidence 99999887 899999999999999997 667776665 44 234799999999999999987543
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.8e-11 Score=113.95 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=134.9
Q ss_pred eccCCceeEEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
..+...+...+|+|+++.++.+...+ ..|.+|++.. +.. ..+....+.+...+|+|++..++++.+.
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~--------g~~---~~l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT--------GRR---EQITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC--------CCE---EEccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 35667889999999998554444333 3688899876 111 2233333445578999999854556665
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCC
Q 014472 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
+| .|.+||+.++.. ..+..+........|+|+++.++.+...+| .|+++|+.+++. ..+......
T Consensus 264 ~g~~~Iy~~d~~~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~~~~ 332 (430)
T PRK00178 264 DGNPEIYVMDLASRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFVGNY 332 (430)
T ss_pred CCCceEEEEECCCCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeecCCCC
Confidence 65 577888876532 222334445667899999987765654444 577778766542 222112223
Q ss_pred eeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEeeCCCCC
Q 014472 276 VNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLSRID 351 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~~~~ 351 (424)
.....|+|+++.++++...++ .|.++|+.+ +.. ..+.. ........|+|+|+.++++...+|. |.++++...
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~- 408 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR- 408 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCC-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 446789999997555554444 578889876 332 22322 2223356899999876666655554 455555321
Q ss_pred cccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
....+..+.+.+...+|+|-
T Consensus 409 --------------~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 --------------VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --------------ceEECcCCCCCcCCCccCCC
Confidence 11222234445677778764
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5e-11 Score=113.12 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=135.1
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe-CC--CcEEEEeCCCCCCCCcccceeeeec
Q 014472 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS-DD--AQICLWDINAAPKNKSLEAMQIFKV 225 (424)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d--g~i~vwd~~~~~~~~~~~~~~~~~~ 225 (424)
.|.++|... .....+..+...+....|+|+++. |+..+ .+ ..|.+|++.++.. ..+..
T Consensus 180 ~l~~~d~~g-----------~~~~~l~~~~~~~~~p~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~~-------~~l~~ 240 (430)
T PRK00178 180 TLQRSDYDG-----------ARAVTLLQSREPILSPRWSPDGKR-IAYVSFEQKRPRIFVQNLDTGRR-------EQITN 240 (430)
T ss_pred EEEEECCCC-----------CCceEEecCCCceeeeeECCCCCE-EEEEEcCCCCCEEEEEECCCCCE-------EEccC
Confidence 467777665 223445567778899999999984 55444 33 3688899977632 11122
Q ss_pred CCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC--cEEEE
Q 014472 226 HEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLF 301 (424)
Q Consensus 226 ~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iw 301 (424)
..+.+...+|+|+++.++.+...+| .|+++|+.++. ...+..+........|+|+++.++++...+| .|+++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 2334557899999987766666555 58888998765 2334445556677899999997666655554 46777
Q ss_pred ECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcce
Q 014472 302 DLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 302 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
|+.. +. ...+...........|+|+++.++++...++ .|.++|+..+.. ..+. . ......
T Consensus 317 d~~~-g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------~~lt--~--~~~~~~ 378 (430)
T PRK00178 317 NVNG-GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------RILT--D--TSLDES 378 (430)
T ss_pred ECCC-CC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------EEcc--C--CCCCCC
Confidence 7765 33 2222222233456789999986555544444 477888876431 1111 1 112235
Q ss_pred EEeCCCCCcEEEEEeCCC--cEEEEecCCC
Q 014472 380 FSWNPCEDWVISSVAEDN--ILQIWQMAEN 407 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~d~--~i~iw~~~~~ 407 (424)
..|+|+|+.++++...++ .|.++++..+
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 689999997666655544 4566666543
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=3.2e-11 Score=110.42 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=152.5
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
++++-..+|.|.|.|..+ .+....+......-..+.++|++. ++++++.||.|.++|+.+.+ .
T Consensus 8 ~~V~~~~~~~v~viD~~t----------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~------~ 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT----------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK------V 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-----------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS------E
T ss_pred EEEEecCCCEEEEEECCC----------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc------E
Confidence 335556789999999887 455666665444445678999988 68888899999999998774 3
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc-------cCCCeeEEEecCCCCeEEEEE
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-------HQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~l~~g 292 (424)
+..+.. ......++++++|++++++....+.+.++|.++.+. +..+.. ....+..|..+|..+.++++-
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~---v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP---VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E---EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc---eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 333433 445788999999999988888999999999998654 444422 234677888888777544444
Q ss_pred eCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc-------------
Q 014472 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA------------- 359 (424)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------- 359 (424)
-..+.|-+.|......................|+|++++++++...++.|.++|.............
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 4458898889887543333333345678889999999877777777778999998765432110000
Q ss_pred ----------------------------CCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCC
Q 014472 360 ----------------------------EDGPPELLFIHGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN 407 (424)
Q Consensus 360 ----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s---~~~d~~i~iw~~~~~ 407 (424)
.....+.+..+.....+ .-+..+|+++++.+. +...+.|.|+|..+.
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 00111223333333333 567789999976665 466789999999876
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.6e-11 Score=110.38 Aligned_cols=199 Identities=20% Similarity=0.283 Sum_probs=147.6
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEec------C-------------CCCceEE
Q 014472 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWS------K-------------FKEGHLL 195 (424)
Q Consensus 135 p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~-------------~~~~~l~ 195 (424)
|....++|....||.++||+........+ ..|...+ .+..+++.|. | .+..+++
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e----~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE----FAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee----eccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 33445899999999999999876221110 1111111 2233344441 1 1233688
Q ss_pred EEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC
Q 014472 196 SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
-|...|.|.+|++..++... ...-..|.+.|+++.++.+-. .|.+++.|+.+..|+...... +......+..
T Consensus 75 lgt~~g~v~~ys~~~g~it~----~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~---~~~~~~~~~~ 146 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITA----KLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI---IRIWKEQKPL 146 (541)
T ss_pred eecCCccEEEEEecCCeEEE----EEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccccee---eeeeccCCCc
Confidence 89999999999998774321 122246899999999987765 566999999999999988664 6666777888
Q ss_pred eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCC-----CCcEEEEEeCCCeEEEeeCCCC
Q 014472 276 VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK-----NETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+.+++.+|++. ++++++ +.|++||+.+ ++.+.+|.+|.++|.+++|--. |.++|.+...+.-+.+|-+...
T Consensus 147 ~~sl~is~D~~-~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 147 VSSLCISPDGK-ILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred cceEEEcCCCC-EEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999987 687775 7899999998 8999999999999999999876 6677777777778999988764
Q ss_pred Cc
Q 014472 351 DE 352 (424)
Q Consensus 351 ~~ 352 (424)
..
T Consensus 223 ~k 224 (541)
T KOG4547|consen 223 DK 224 (541)
T ss_pred cc
Confidence 43
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=8.3e-11 Score=111.44 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=125.9
Q ss_pred ccCCceeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
.+...+...+|+|+++. ||..... ..|++|++.+ + ....+..+...+.+++|+|++..++++.+.
T Consensus 187 ~~~~~~~~p~~Spdg~~-la~~~~~~~~~~i~v~d~~~--------g---~~~~~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 187 RSREPILSPAWSPDGQK-LAYVSFESGKPEIYVQDLAT--------G---QREKVASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred cCCCceecccCCCCCCE-EEEEEcCCCCcEEEEEECCC--------C---CEEEeecCCCCccceEECCCCCEEEEEECC
Confidence 45567888999999984 5544432 4799999876 1 122344455667789999999865556655
Q ss_pred CC--cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCC
Q 014472 200 DA--QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSE 275 (424)
Q Consensus 200 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 275 (424)
++ .|.+|++.++.. ..+..+........|+|+++.++.+....+ .|.++|+.+++ ...+..+...
T Consensus 255 ~~~~~i~~~d~~~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred CCCccEEEEECCCCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 55 588888876532 222234444557789999987765554444 57777877644 2333345566
Q ss_pred eeEEEecCCCCeEEEEEeCCC---cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEeeC
Q 014472 276 VNCLAFNPFNEWILATGSTDK---TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDL 347 (424)
Q Consensus 276 v~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~ 347 (424)
+..+.|+|++.. ++.++.++ .|.+||+.+ +. ...+.. ........|+|+++.++++...++. +.+.+.
T Consensus 324 ~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSPDGDL-IAFVHREGGGFNIAVMDLDG-GG-ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECCCCCE-EEEEEccCCceEEEEEeCCC-CC-eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 778899999985 55555554 788889876 32 233332 2234567899999865555555443 444443
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=9.8e-12 Score=113.04 Aligned_cols=195 Identities=15% Similarity=0.253 Sum_probs=153.4
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEee-------------------CCCCcEEEEEeCC
Q 014472 189 FKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH-------------------LRHEYLFGSVGDD 249 (424)
Q Consensus 189 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-------------------~~~~~~~~s~~~d 249 (424)
.+..++|....||.+++|+...++....+.+.... ++..++..|. ..+..+++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34448999999999999999887655444443332 2334444441 1123466778889
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCC
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 329 (424)
|.|.+|++..++.. .......|.+.|+++.++.+-. .|.+++.|+.+..|+... ...+..+......+.+++.+|++
T Consensus 80 g~v~~ys~~~g~it-~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEIT-AKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred ccEEEEEecCCeEE-EEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCC
Confidence 99999999987741 1122256899999999998776 799999999999999987 77888888888999999999998
Q ss_pred CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC-----CCcEEEEEeCCCcEEEEec
Q 014472 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC-----EDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iw~~ 404 (424)
. +|++++ +.|++||+.+. +.+..+.||.++|+.+.|... |.++|.+...+..+.+|-+
T Consensus 157 ~-~l~~as--~~ik~~~~~~k--------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 157 K-ILLTAS--RQIKVLDIETK--------------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred C-EEEecc--ceEEEEEccCc--------------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 6 677765 46999999985 789999999999999999877 7888888888888999988
Q ss_pred CC
Q 014472 405 AE 406 (424)
Q Consensus 405 ~~ 406 (424)
..
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 76
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.9e-10 Score=108.03 Aligned_cols=209 Identities=10% Similarity=0.088 Sum_probs=123.4
Q ss_pred cCCceeEEEecCCCCc--EEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 124 HDGEVNRARYMPQNPF--LIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~--~latg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
....+..-+|+|+|+. ++.+...+| .|++.++.. +.. ..+....+.....+|+|+|..++++...
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~--------g~~---~~lt~~~g~~~~p~wSPDG~~Laf~s~~ 251 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN--------PAG---KKILALQGNQLMPTFSPRKKLLAFISDR 251 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCC--------CCc---eEeecCCCCccceEECCCCCEEEEEECC
Confidence 3455677899999875 323444443 577777765 222 2333344455678999999854444433
Q ss_pred CC----cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEE--ECCCCCCCCCeeEecccC
Q 014472 200 DA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW--DLRTPSVSKPVQSVVAHQ 273 (424)
Q Consensus 200 dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~--d~~~~~~~~~~~~~~~~~ 273 (424)
+| .+.+|++..+.... ...............+|+|+|+.++.+...+|...+| ++.... .....+..+.
T Consensus 252 ~g~~di~~~~~~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~ 326 (428)
T PRK01029 252 YGNPDLFIQSFSLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKY 326 (428)
T ss_pred CCCcceeEEEeecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCC
Confidence 33 34446765431111 1111222223446789999998776555556755555 443211 1133343445
Q ss_pred CCeeEEEecCCCCeEEEEEeCC--CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEeeCCC
Q 014472 274 SEVNCLAFNPFNEWILATGSTD--KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSR 349 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~ 349 (424)
..+....|+|+|+.+++++..+ ..|.+||+.+ +.. ..+......+....|+|+++.+++++... ..|.++++..
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 5678899999999755555443 3689999986 333 33333344677899999998666555543 4577778765
Q ss_pred C
Q 014472 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
+
T Consensus 405 g 405 (428)
T PRK01029 405 K 405 (428)
T ss_pred C
Confidence 4
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.6e-11 Score=118.53 Aligned_cols=194 Identities=12% Similarity=0.144 Sum_probs=145.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
.++.+..+..+.+||.........+..-.... -....-+.+++. ...+++|+.-+.|.+|+....+ ++. .+.+|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~--l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn--~p~-~l~GH 174 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCT--LYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDN--KPI-RLKGH 174 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEE--EEeEEEEeccCc-EEEEEeccccccEEEEeccccC--Ccc-eeccc
Confidence 58888888999999997664332221100000 001112233443 3456789999999999998433 233 57899
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
.+.|.++.|+-+|. ++++.+.|.++++|++.+......+.-+|+..|..++|.|+ .+++++.|.+.++|+...
T Consensus 175 eG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~--- 247 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNG--- 247 (967)
T ss_pred CCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEeccc---
Confidence 99999999999998 59999999999999999855555577789999999999998 489999999999996654
Q ss_pred ccCCCccCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDE 412 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 412 (424)
..+..+.+|. ..|+.++..+... +++|++.|+.+++|++....++..
T Consensus 248 ------------~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~~e~~ 295 (967)
T KOG0974|consen 248 ------------TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRGLEGH 295 (967)
T ss_pred ------------ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccccccc
Confidence 2233556664 4589999988888 799999999999999988766543
No 257
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.38 E-value=1.1e-09 Score=113.37 Aligned_cols=257 Identities=10% Similarity=0.131 Sum_probs=161.6
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe--------------cCCCCeeeEEecCCCCceE
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR--------------GHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l 194 (424)
..+++.+.+..++++-..++.|+++|..... ...+. ++-....+|++.+++. .|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-----------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn-~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-----------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN-LL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-----------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC-EE
Confidence 4578887655688888888999999976521 11111 1112357899998776 45
Q ss_pred EEE-eCCCcEEEEeCCCCCCCCcccce----eeeec-------CCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC
Q 014472 195 LSG-SDDAQICLWDINAAPKNKSLEAM----QIFKV-------HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 195 ~s~-~~dg~i~vwd~~~~~~~~~~~~~----~~~~~-------~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
+++ ...+.|+++|+.++.. ..+... ..+.+ .-...++++++|++..++++.+.++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 544 4467899999865421 000000 00000 0123468999997667888888899999999876532
Q ss_pred CCCeeEecc---------------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce------------eecC
Q 014472 263 SKPVQSVVA---------------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH------------TFDS 315 (424)
Q Consensus 263 ~~~~~~~~~---------------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~------------~~~~ 315 (424)
..+.+ .-.....|+++|++..++++-+.++.|++||+.+....+. .+..
T Consensus 718 ----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 718 ----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred ----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 11100 1124567999999987777777889999999986321110 0000
Q ss_pred C--------CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCcc----CCCCCeeeEEEcCCCCCcceEEeC
Q 014472 316 H--------KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDA----EDGPPELLFIHGGHTSKISDFSWN 383 (424)
Q Consensus 316 ~--------~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~ 383 (424)
+ -.....++++++|. ++++-..+++|++||..++......... .++. ...+.-.....++++
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~-----~~~a~l~~P~GIavd 867 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK-----ALKAQLSEPAGLALG 867 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc-----ccccccCCceEEEEe
Confidence 0 11346889999985 7888888999999999764321100000 0000 011222357889999
Q ss_pred CCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 384 PCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 384 ~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
++|+ ++++-+.+++|++|++.++..
T Consensus 868 ~dG~-lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 ENGR-LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCC-EEEEECCCCEEEEEECCCCcc
Confidence 9998 788888999999999988754
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.6e-11 Score=108.92 Aligned_cols=206 Identities=13% Similarity=0.177 Sum_probs=151.3
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
..-..++++.-...++++|+ ...|+-+++.. ..-+..+....+.++++..++... +|++|+.+|.|..
T Consensus 134 ~~GRDm~y~~~scDly~~gs-g~evYRlNLEq----------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEf 201 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQ----------GRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEF 201 (703)
T ss_pred cCCccccccCCCccEEEeec-CcceEEEEccc----------cccccccccccccceeeeecCccc-eEEecccCceEEE
Confidence 34456777765655666555 44677778876 344555666678899999999766 8999999999999
Q ss_pred EeCCCCCCCCcccceeeeecCCcc-----eeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe-cccCCCeeEE
Q 014472 206 WDINAAPKNKSLEAMQIFKVHEGV-----VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCL 279 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i 279 (424)
||.+.......+........|.+. |+++.|+.+|- -+++|..+|.+.|||+|+.+. +..- ....-+|..+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKKL 277 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCc---eeecccCCccceeee
Confidence 999987665555444444445544 99999998864 568999999999999999663 3321 2345689999
Q ss_pred EecCCCC-eEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 280 AFNPFNE-WILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 280 ~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.|.+.+. ..+++ .....++|||-.+ +++...+.. ...+..+++-|++. +++++-.++.+..|-+...+
T Consensus 278 ~~~~~~~q~~v~S-~Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 278 DWQDTDQQNKVVS-MDKRILKIWDECT-GKPMASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccccCCCceEEe-cchHHhhhccccc-CCceeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccC
Confidence 9977632 23444 3457899999887 777777765 56699999999986 78899988888888776544
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.9e-10 Score=104.16 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=155.8
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce-EEE-----EeCCCc
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH-LLS-----GSDDAQ 202 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~s-----~~~dg~ 202 (424)
.+..|+++.. +++=-..+.|++|++... . ...-.-|...|..+.++|..... +++ .+.-+.
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f----------~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSF----------K-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCc----------c-ceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 5888888775 443345678999998861 1 11223367789999999963433 333 345567
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC-----------CCeEEEEECCCCCCCCCeeEecc
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-----------DQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~-----------dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
|+||..........+.. +.+ ....=..+.|++-+.-+|+.++. ..+++++++..... ... -.
T Consensus 196 vri~~~~~~~~~~~~a~-ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~---~V~-L~ 268 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVAN-KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV---SVP-LL 268 (566)
T ss_pred EEEeccccccccchhhh-ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE---EEe-cC
Confidence 99998863322111111 111 12223457788777666554432 24688888874332 111 22
Q ss_pred cCCCeeEEEecCCCCeE-EEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEeeC
Q 014472 272 HQSEVNCLAFNPFNEWI-LATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL---GRRLMVWDL 347 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~iwd~ 347 (424)
-.++|.++.|+|.+.-+ ++-|-.=..+.|||++. .++..+. .++-+++-|+|.|. +++.++. -|.|-|||+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeCC--CCCccceEECCCCC-EEEEeecCCCCCceEEEec
Confidence 47899999999998643 33355567899999994 6766664 67889999999997 4555544 478999999
Q ss_pred CCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-----CCCcEEEEecCCCCCCC
Q 014472 348 SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-----EDNILQIWQMAENIYHD 411 (424)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-----~d~~i~iw~~~~~~~~~ 411 (424)
.+.+ ++..+..- .-+-+.|+|+|.+++.+.. .|+.++||+....++..
T Consensus 344 ~n~K--------------~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 344 PNRK--------------LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred cchh--------------hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 8843 33333322 2355799999997554444 38889999998876543
No 260
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=3.9e-11 Score=100.88 Aligned_cols=262 Identities=17% Similarity=0.269 Sum_probs=171.7
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC------------CCeeeEEecCC-C
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS------------TEGYGLSWSKF-K 190 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~-~ 190 (424)
....|+++.|...|. ++|+|...|.|.+|.-.... . ...+-...+++|. ..|..+.|..+ +
T Consensus 25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~-~----ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSY-G----CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccc-eEeecCCCceEEEeeccccc-c----cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 345788999988775 89999989999999876521 0 1122233455554 35788988754 4
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCC----------------C---c---c--------------cceeee-ecCCcceeeE
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKN----------------K---S---L--------------EAMQIF-KVHEGVVEDV 233 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~----------------~---~---~--------------~~~~~~-~~~~~~v~~i 233 (424)
...++..+.|.+|++|.+...... . . + .+.+.+ ..|.-.|+++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 446888889999999988654110 0 0 0 111122 4577889999
Q ss_pred EeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC-----CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014472 234 AWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-----SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308 (424)
Q Consensus 234 ~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 308 (424)
.++.+...++ + ++|-.|.+|++......-.+..++.|. .-|++..|+|..-.+|.-.+..|.|++-|+|...-
T Consensus 179 S~NsD~et~l-S-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 179 SFNSDKETLL-S-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eecCchheee-e-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9998877554 4 478889999987654332333334443 35889999998877888888899999999995221
Q ss_pred c-----ce----------eecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCC
Q 014472 309 A-----LH----------TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH 373 (424)
Q Consensus 309 ~-----~~----------~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 373 (424)
+ +. -+..-...|..+.|+++|+ ++++-+. -+++|||++... .++++..-|
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiwDvnm~k-------------~pikTi~~h 321 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIWDVNMAK-------------NPIKTIPMH 321 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEEeccccc-------------CCceeechH
Confidence 1 11 1112235788999999996 5555443 479999998754 223333222
Q ss_pred C------------CCc---ceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 374 T------------SKI---SDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 374 ~------------~~v---~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
. ..| ..+.|+.+.. .+.+|+..+..-|+-..+...
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ssg~ 371 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTDSSGF 371 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeeccccCCC
Confidence 1 223 2467787777 577888888777777555443
No 261
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=1.9e-09 Score=98.89 Aligned_cols=244 Identities=12% Similarity=0.171 Sum_probs=156.7
Q ss_pred EEEecC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC----CCcEEEEeCCCCCC
Q 014472 142 ATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD----DAQICLWDINAAPK 213 (424)
Q Consensus 142 atg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~ 213 (424)
.+|+.. +.|++|+++... +........ .-......|+++|++. +|.++.. +|.|..|++....
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~------g~l~~~~~~-~~~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~- 73 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEET------GTLTLVQTV-AEGENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT- 73 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTT------TEEEEEEEE-EESSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT-
T ss_pred EEEcCCCCCCCcEEEEEEcCCC------CCceEeeee-cCCCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc-
Confidence 344554 789999985411 222222222 2344567899999887 6776655 5789999987542
Q ss_pred CCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCe-eEec----------ccCCCeeEEEec
Q 014472 214 NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV-QSVV----------AHQSEVNCLAFN 282 (424)
Q Consensus 214 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~-~~~~----------~~~~~v~~i~~~ 282 (424)
..+..+............++++|+++.++++...+|.|.++++......... ..+. .......++.++
T Consensus 74 -g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 74 -GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp -TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred -ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 2333344444345566789999999998887778999999999874321111 1110 123457899999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcc---eee-cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCc
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTAL---HTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 358 (424)
|++++++++.-....|.+|++......+ ..+ .........+.|+|+++.++++.-.++.|.++++......
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~----- 227 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS----- 227 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----
Confidence 9999776666566789999998643222 122 2345678999999999877777778999999998822110
Q ss_pred cCCCCCeeeEEEc----CC--CCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 359 AEDGPPELLFIHG----GH--TSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 359 ~~~~~~~~~~~~~----~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
...+.... +. ......++++|+|++++++....+.|.+|++.
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 228 -----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred -----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 11111111 11 12467899999999888888888999999994
No 262
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.34 E-value=4.5e-10 Score=92.66 Aligned_cols=240 Identities=13% Similarity=0.043 Sum_probs=153.6
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
.+||.|+..|...+|...+.. ........|...|.-+.=.-+....+..++.|.++++.++..+....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~---------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTND---------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--- 152 (344)
T ss_pred cEEEeccccceeeeecccCcc---------cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---
Confidence 479999999999999998621 11222233443332221111122247778899999999987653321
Q ss_pred ceeeeecCCc--ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-EecccCCCeeEEEecCCCCeEEEEEeCC
Q 014472 219 AMQIFKVHEG--VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTD 295 (424)
Q Consensus 219 ~~~~~~~~~~--~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~g~~d 295 (424)
..|.. .+++++++++++ +.++.++...|..|.+..... ..+. ........-.+..|+.... .+|++..|
T Consensus 153 -----~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~se-y~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qd 224 (344)
T KOG4532|consen 153 -----AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESE-YIENIYEAPTSDHGFYNSFSENDL-QFAVVFQD 224 (344)
T ss_pred -----eeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccc-eeeeeEecccCCCceeeeeccCcc-eEEEEecC
Confidence 12333 378999999987 556888889999999987553 1222 2334456678889998776 79999999
Q ss_pred CcEEEEECCCCCCcceee----cCCCCCEEEEEEcCCCCc-EEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEE
Q 014472 296 KTVKLFDLRKISTALHTF----DSHKEEVFQVGWNPKNET-ILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH 370 (424)
Q Consensus 296 g~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 370 (424)
|++.|||+|..+.+.... ..|.+++..+.|++.|.. +|...-.-+.+.+.|+++...-+...-.+ . ..
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~----d---~~ 297 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD----D---VE 297 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc----c---cc
Confidence 999999999877665433 468999999999986642 34444445679999999876433211000 0 01
Q ss_pred cCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 371 GGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 371 ~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..|.. .|....|+.++.- +.+.+++ .+.=|++.+.
T Consensus 298 ~~~~tq~ifgt~f~~~n~s-~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENES-NDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccccccccccCCCcc-cccccch-hhheeecccc
Confidence 22332 3777888877763 4443433 3455665543
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.31 E-value=1.3e-10 Score=95.31 Aligned_cols=209 Identities=17% Similarity=0.250 Sum_probs=126.6
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC--CCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP--PLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
|+.+.+.-+ ..|+++..++.+..+......... +......+...+..|.++-.+-+.+-.+. .++++..||.+.+
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 444555432 356666666555544433210000 00112333444555554433333333344 4999999999999
Q ss_pred EeCCCCCCCCcccceeeee-cCCcceeeEEeeCCCCcEEEEE-----eCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 206 WDINAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRHEYLFGSV-----GDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
++.+.... ...... .|.+ -.+.+....+. ++.++ ..-+..+.|+++..+.. ..-......|+++
T Consensus 116 ~s~~~~~~-----~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 116 FSTDKDLA-----LMSRIPSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTL---IPSKKALDAVTAL 185 (319)
T ss_pred EechHHHh-----hhhhccccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccc---cccccccccchhh
Confidence 99865211 111111 1111 11222222232 22222 12344566776654321 1111123449999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+-+|..++++++|+.||.+.+||.|+...+...+..|+.+|+.+-|+|..+.-|++++.||.+.-||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999999999999999999988888999999999999999998877799999999999999874
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.31 E-value=3.1e-11 Score=112.38 Aligned_cols=214 Identities=18% Similarity=0.312 Sum_probs=155.6
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
+-..+|..+|+.+.|+|+.+.++|+++.|..|..||+.+. ..+......-......++|+-..++ +++.+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp---------~~p~ys~~~w~s~asqVkwnyk~p~-vlass 177 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP---------HRPFYSTSSWRSAASQVKWNYKDPN-VLASS 177 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCC---------CcceeeeecccccCceeeecccCcc-hhhhc
Confidence 3456899999999999999999999999999999999872 3445555544456678999988875 55566
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
....|.+||++.+.. ++..+++|...|+.+.|+..-...+.+++.||+|+.||...... ..........+|..
T Consensus 178 hg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWR 250 (1081)
T ss_pred cCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCccee
Confidence 778899999987753 56667789999999999765444566999999999999875432 11122233556777
Q ss_pred EEecCCCCeEEEEEeC-CCcEEE---------EECCCCCCcceeecCCCCCEEEEEEcCCC---------CcEEEEEeCC
Q 014472 279 LAFNPFNEWILATGST-DKTVKL---------FDLRKISTALHTFDSHKEEVFQVGWNPKN---------ETILASCCLG 339 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~-dg~i~i---------wd~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~~l~s~~~d 339 (424)
-.+-|.|+-..+.-.. +..+.+ |+......++++|.+|...|....|-..+ ..-|++=+.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD 330 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD 330 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC
Confidence 7777766533222111 113333 44444557899999999999888875433 2458899999
Q ss_pred CeEEEeeCCC
Q 014472 340 RRLMVWDLSR 349 (424)
Q Consensus 340 g~i~iwd~~~ 349 (424)
..+++|-+..
T Consensus 331 ~~lrlWpI~~ 340 (1081)
T KOG0309|consen 331 QTLRLWPIDS 340 (1081)
T ss_pred CceEeeeccH
Confidence 9999998864
No 265
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=7.7e-10 Score=100.27 Aligned_cols=205 Identities=18% Similarity=0.305 Sum_probs=136.8
Q ss_pred EeccCCceeEEEecCC-CCcEEEE-----EecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceE
Q 014472 121 QINHDGEVNRARYMPQ-NPFLIAT-----KTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHL 194 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~-~~~~lat-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 194 (424)
..-|...|+.+.++|. ....+|+ ++.-+.|+||.+....... .....++ ....=..+.|++-+..+|
T Consensus 161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-----~~a~ksF--Fkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-----PVANKSF--FKADKVQMKWNKLGTALL 233 (566)
T ss_pred eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-----hhhhccc--cccceeEEEeccCCceEE
Confidence 3346788999999996 4445665 4556799999987411111 1111122 223334688999888776
Q ss_pred EEEeC--C---------CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcE-EEEEeCCCeEEEEECCCCCC
Q 014472 195 LSGSD--D---------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 195 ~s~~~--d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~s~~~dg~i~i~d~~~~~~ 262 (424)
+.++. | .++++.+++... ....+ ...++|.++.|+|++..+ ++.|-.-..+.|||++..-
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s------~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~- 305 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGES------VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP- 305 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCce------EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-
Confidence 65543 2 357777776321 11111 247899999999998644 3344567789999998632
Q ss_pred CCCeeEecccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC--
Q 014472 263 SKPVQSVVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL-- 338 (424)
Q Consensus 263 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-- 338 (424)
+.. ...++=+++-|+|.|..++++|-. -|.|-|||+.+ .+.+..+.... -+-+.|+|+|++ |+|+..
T Consensus 306 ---v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~--tt~~eW~PdGe~-flTATTaP 376 (566)
T KOG2315|consen 306 ---VFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAAN--TTVFEWSPDGEY-FLTATTAP 376 (566)
T ss_pred ---eEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCC--ceEEEEcCCCcE-EEEEeccc
Confidence 333 346788999999999865555443 48999999998 77788877643 456899999985 555543
Q ss_pred ----CCeEEEeeCCC
Q 014472 339 ----GRRLMVWDLSR 349 (424)
Q Consensus 339 ----dg~i~iwd~~~ 349 (424)
|+.++||+...
T Consensus 377 RlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEecCCeEEEEecC
Confidence 67799999864
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.2e-10 Score=108.91 Aligned_cols=191 Identities=21% Similarity=0.275 Sum_probs=142.3
Q ss_pred ecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCC-----eeeEEecCCCCceEEEEeCCCcEEEEe
Q 014472 133 YMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE-----GYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 133 ~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~~l~s~~~dg~i~vwd 207 (424)
+.-.+. .++.++.+..+.+||...... ...+. +... ..-+-++++. -++++|+.-+.|.+|+
T Consensus 95 l~~e~k-~i~l~~~~ns~~i~d~~~~~~----------~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 95 LFEENK-KIALVTSRNSLLIRDSKNSSV----------LSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhcc-eEEEEEcCceEEEEecccCce----------ehhcC-CCceEEEEeEEEEeccCcE-EEEEeccccccEEEEe
Confidence 333444 677788889999999876211 11111 2211 1122233433 3789999999999999
Q ss_pred CCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCe
Q 014472 208 INAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 287 (424)
...... + ..+.+|.+.|.++.|+.++.+ +++.++|.++++|++.+.+... ....+|...|..+.|.|.
T Consensus 162 ~~~dn~-----p-~~l~GHeG~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--- 229 (967)
T KOG0974|consen 162 PHEDNK-----P-IRLKGHEGSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--- 229 (967)
T ss_pred ccccCC-----c-ceecccCCceEEEEEccCCcE-EEEEecCcceeeeecccccccC--cccccccceeEEEEeccc---
Confidence 973321 1 146789999999999999974 5799999999999999987633 355689999999999996
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceeecCCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 288 ILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 288 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+++++.|.+.++|+... ..+..+..|. ..|..++..+... +++|++.|+.+++|++....
T Consensus 230 ~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eeEEeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence 599999999999997763 5555777775 4799999988874 79999999999999987654
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=8.5e-10 Score=94.16 Aligned_cols=224 Identities=19% Similarity=0.309 Sum_probs=159.2
Q ss_pred CcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCC-CCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC
Q 014472 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~ 248 (424)
....+.||.+.+++...-|..++ +++.+.|.+++||--+.. +.-+. .......+++++.+.+.... ++.|-.
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wps-----I~~~mP~~~~~~~y~~e~~~-L~vg~~ 88 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWPS-----IYHYMPSPCSAMEYVSESRR-LYVGQD 88 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCch-----hhhhCCCCceEeeeeccceE-EEEEEe
Confidence 34567889999999988887775 999999999999964433 22111 12335678999999988764 458899
Q ss_pred CCeEEEEECCCCC-CCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEE----------------------------
Q 014472 249 DQYLLIWDLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK---------------------------- 299 (424)
Q Consensus 249 dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~---------------------------- 299 (424)
.|++.-+.+...- ....+.....|...+..+-|+-.-.. +++.+.|..+.
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY 167 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence 9999988765321 11233444567777777777654442 44444443221
Q ss_pred -----------EEECC-CCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeee
Q 014472 300 -----------LFDLR-KISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 300 -----------iwd~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+-.+. +.-.++.++.+|...+.+++|.|... +|.+|..|..+.+||+.... ...
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~-------------g~~ 233 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK-------------GTA 233 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc-------------cee
Confidence 11111 01245778889999999999999875 89999999999999997543 456
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 014472 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLP 416 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 416 (424)
....+|...|..+..-+.-+ .+.+++.||.|.+|+++....+..+=.+
T Consensus 234 ~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl~ 281 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWLD 281 (404)
T ss_pred eeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCccccc
Confidence 67789999999988887777 6888999999999999887666554443
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=7.1e-09 Score=96.76 Aligned_cols=256 Identities=14% Similarity=0.196 Sum_probs=161.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCC-----CCCCCCcEEEecCCCCeeeEEecCCCCceEEEE
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPL-----DGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 197 (424)
+......|+.|+.... ++|+|+.||.+++..+.+.....+. ........++.||++.|.-+.|+.+.+ .|-++
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-ccccc
Confidence 4456778999998665 8999999999999998764332221 122334567889999999999998777 59999
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCC--------------
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVS-------------- 263 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~-------------- 263 (424)
..+|.|.+|-+-.++--.. ..-....+-|.+++|+.+|..+ +....||.|.+=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EE----MiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEE----MINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred CCCceEEEEeeecccHHHH----HhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999876532111 1112245678889998888644 46666776655444322110
Q ss_pred -------------------------------CCee----EecccCCCeeEEEec--------CCCCeEEEEEeCCCcEEE
Q 014472 264 -------------------------------KPVQ----SVVAHQSEVNCLAFN--------PFNEWILATGSTDKTVKL 300 (424)
Q Consensus 264 -------------------------------~~~~----~~~~~~~~v~~i~~~--------~~~~~~l~~g~~dg~i~i 300 (424)
.... .+......|..+.|. |+.+ .||++-..|.+.+
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQI 243 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehh
Confidence 0000 001112234555553 3555 5888888888887
Q ss_pred EECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC---------eEEEeeCCCCCcccCCCccCCCCCeeeEEEc
Q 014472 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR---------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371 (424)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
-.-.+...|+..-. .-.+..+.|+++|. +||.++.+. .|.+|..-. ..+..++
T Consensus 244 MR~eND~~Pvv~dt--gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~G---------------~i~gtlk 305 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT--GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPYG---------------HIVGTLK 305 (1189)
T ss_pred hhhcCCCCCeEEec--ccEeecceecCCCc-EEEEccCcccccCccccceEEEeccch---------------hheEEEe
Confidence 65544334433222 36789999999995 788887653 333333221 3445555
Q ss_pred CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 372 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.....|++++|-..|- .++- ..|+.|.+=++..
T Consensus 306 vpg~~It~lsWEg~gL-riA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGL-RIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred cCCceeeeeEEcCCce-EEEE-EecceEEEEeecc
Confidence 5566789999976654 2333 3466666655544
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=6.3e-08 Score=83.87 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=156.4
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeee
Q 014472 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIF 223 (424)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~ 223 (424)
+.-|++|++.+.... .. ...+..+.+.++-|+|+|+.+ .|.++-. +|.|..|.++... ..+..+...
T Consensus 15 s~gI~v~~ld~~~g~------l~-~~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGE------LS-LLQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQ 84 (346)
T ss_pred CCceEEEEEeCcccc------cc-hhhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCC--CeEEEeecc
Confidence 467999999863221 12 223445777889999999887 5766644 5778888776431 111222222
Q ss_pred ecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC----------eeEEEecCCCCeEEEEEe
Q 014472 224 KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------VNCLAFNPFNEWILATGS 293 (424)
Q Consensus 224 ~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~i~~~~~~~~~l~~g~ 293 (424)
.....+...++++++++.+|++....|.|.++-++.............|... +.+..+.|++++++++--
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 2233445889999999999888788899999999875444444344445555 889999999996555544
Q ss_pred CCCcEEEEECCCCCCcc----eeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc-CCCccCCCCCeeeE
Q 014472 294 TDKTVKLFDLRKISTAL----HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ-TPEDAEDGPPELLF 368 (424)
Q Consensus 294 ~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~ 368 (424)
.--.|.+|++.. +... ..+ .....-..+.|+|+++...+.+=-+++|.+|......... ..... ..+-.
T Consensus 165 G~Dri~~y~~~d-g~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i----~tlP~ 238 (346)
T COG2706 165 GTDRIFLYDLDD-GKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI----DTLPE 238 (346)
T ss_pred CCceEEEEEccc-Ccccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee----ccCcc
Confidence 455799999985 3221 112 3456788999999998555566669999999998742111 00000 00011
Q ss_pred EEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 369 IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.+.+ .....++..+++|++|.+|--....|.+|.+...
T Consensus 239 dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 239 DFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 1222 2346778899999965555445557888887643
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=118.45 Aligned_cols=192 Identities=17% Similarity=0.266 Sum_probs=145.2
Q ss_pred CCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEE
Q 014472 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d 256 (424)
+-..|.++.=+|... +.++|+.||.|++|.-..++....+ + ......|+.+.|+.+|+ -+..+..||.+.+|.
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~---r--t~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCF---R--TAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEe---e--ccCcchhhhhhhcccCC-ceeeeccCCceeecc
Confidence 445677777788777 7899999999999988766432211 1 12237899999999886 467888999999999
Q ss_pred CCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEE
Q 014472 257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l 333 (424)
+. .+++...+.|....+.+.|-. . ++++++ .++.+.+||.-.....-.....|.+.++++++.|..+ +|
T Consensus 2280 ~~----pk~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-ll 2351 (2439)
T KOG1064|consen 2280 AS----PKPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LL 2351 (2439)
T ss_pred cC----CcceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EE
Confidence 87 346777888999999988875 3 577765 3679999998654443333478999999999999985 89
Q ss_pred EEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
++|+.+|.|++||++... +...++ . ++ ... .+++|+..|.++||++..-.
T Consensus 2352 isggr~G~v~l~D~rqrq--------------l~h~~~-----~----~~-~~~-~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQ--------------LRHTFQ-----A----LD-TRE-YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EecCCcCcEEEeehHHHH--------------HHHHhh-----h----hh-hhh-eeeccCcccceEEEEccccc
Confidence 999999999999998742 222221 1 44 334 68999999999999998753
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.2e-10 Score=103.59 Aligned_cols=221 Identities=13% Similarity=0.203 Sum_probs=149.9
Q ss_pred CcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
..+.+....+|+..|..++--.+. +-+++++.|.+|++|.+....... +...+..+++.|+.+|.++.|..+.. +
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~---~tsaCQfTY~aHkk~i~~igfL~~lr-~ 798 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI---GTSACQFTYQAHKKPIHDIGFLADLR-S 798 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc---ccceeeeEhhhccCcccceeeeeccc-e
Confidence 456777778999999998876544 468889999999999998632222 33446778899999999999987654 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC-CCc-EEEEEeCCCeEEEEECCCCCCCCCeeEe--
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR-HEY-LFGSVGDDQYLLIWDLRTPSVSKPVQSV-- 269 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~-~~~s~~~dg~i~i~d~~~~~~~~~~~~~-- 269 (424)
++ +.||.|.+||.--+.....+ ..-. ..+.+.-+..-+. .+. ++|.++...+|+++|.|..+....+...
T Consensus 799 i~--ScD~giHlWDPFigr~Laq~---~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 799 IA--SCDGGIHLWDPFIGRLLAQM---EDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ee--eccCcceeecccccchhHhh---hcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 55 55799999998655322111 1111 1222333333332 333 4444478899999999987643233322
Q ss_pred cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEE-eeCC
Q 014472 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV-WDLS 348 (424)
Q Consensus 270 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~i-wd~~ 348 (424)
.+....+.+++..+.|++ +|+|-.+|.|.+.|.|+ +..+..+..-......++- |.. +.|+....|.++.+ |...
T Consensus 873 ~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~-G~vINswrpmecdllqlaa-psd-q~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNK-LAAALSNGCIAILDARN-GKVINSWRPMECDLLQLAA-PSD-QALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CCCchheeEEEeccCcch-hhHHhcCCcEEEEecCC-CceeccCCcccchhhhhcC-chh-HHHHhhcccceeEeeehhc
Confidence 334567899999999985 88999999999999998 6767666654444444443 333 35777777888888 7654
Q ss_pred C
Q 014472 349 R 349 (424)
Q Consensus 349 ~ 349 (424)
.
T Consensus 949 d 949 (1034)
T KOG4190|consen 949 D 949 (1034)
T ss_pred C
Confidence 4
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=9.4e-09 Score=96.79 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=169.3
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC-----------Cc
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK-----------EG 192 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----------~~ 192 (424)
|...-.++.|+|.| +||-|+. ..|.+-|..+ .+.+..+..|...|+.+.|.|.. .-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~l 80 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQL 80 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh----------hhhhhccccCccceeEEEeccCCCchhccCccccce
Confidence 34446789999977 7888774 5788888776 56677888899999999998742 11
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeC---CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
+|+++...|.|.+||+..+.. +..+..|..++.+++|-+ +.+.++++-....++.+|+..+++. +-..
T Consensus 81 liAsaD~~GrIil~d~~~~s~------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~ 151 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASV------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKY 151 (1062)
T ss_pred eEEeccccCcEEEEEehhhhh------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eecc
Confidence 577888899999999987643 333455788899999865 4446777888889999999999874 4444
Q ss_pred cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC---cceee---cCCCC------------C------------
Q 014472 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST---ALHTF---DSHKE------------E------------ 319 (424)
Q Consensus 270 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~---~~~~~------------~------------ 319 (424)
........|+.++|.....+..-+..|.+.+-+.-...+ +.+.+ ..|.. .
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 445567888999997766666666677777766532121 12221 12211 0
Q ss_pred -EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCC-cEEEEEeCCC
Q 014472 320 -VFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WVISSVAEDN 397 (424)
Q Consensus 320 -v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~ 397 (424)
...++|+|.-+++++..- ...+.|+|+.-. .++....-..+.+.-+.|-|+.+ ..|.+.-.||
T Consensus 232 y~a~faf~p~~rn~lfi~~-prellv~dle~~--------------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG 296 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNILFITF-PRELLVFDLEYE--------------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG 296 (1062)
T ss_pred HHHhhhcChhhhceEEEEe-ccceEEEcchhh--------------ceeEEEEeccCCcceeEeccCCCcceEEEEecCC
Confidence 134677887776555443 455999999764 33444333344566677777653 2678888999
Q ss_pred cEEEEecCC
Q 014472 398 ILQIWQMAE 406 (424)
Q Consensus 398 ~i~iw~~~~ 406 (424)
++.||.-..
T Consensus 297 ~ltirvrk~ 305 (1062)
T KOG1912|consen 297 RLTIRVRKE 305 (1062)
T ss_pred eEEEEEeec
Confidence 999997654
No 273
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.16 E-value=3.6e-11 Score=110.42 Aligned_cols=211 Identities=17% Similarity=0.285 Sum_probs=144.2
Q ss_pred CceeEEEecCCC-CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe----CC
Q 014472 126 GEVNRARYMPQN-PFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS----DD 200 (424)
Q Consensus 126 ~~v~~i~~~p~~-~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----~d 200 (424)
..+.|+++.-+. +-++++|..+|.|.+-.+.... ........+|....++++|++-..+.||+|- .|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--------dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--------DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc--------cccceecccccccccccccccccHHHHHhhhhhhccc
Confidence 345566655433 3589999999999999887621 1223345678889999999998777777763 36
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
..+.|||+.+.-....-.... ..+.....++++|..+.+ ++.+|.....+.++|+|.... ......+..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke~~~f-s~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLF-SSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCcccccc-ccccccCccccccccCcc-hhhcccccchhhhhhhhhhhh----hhhhhhhhhcccce
Confidence 789999998763321111111 112344566889987765 566888888999999995432 11112344566777
Q ss_pred ecCCCCeEEEEEeCCCcEEEEE-CCCCCCcceeecCCCC----CEEEEEEcCCCCcEEEEEeCC-CeEEEeeCCCCC
Q 014472 281 FNPFNEWILATGSTDKTVKLFD-LRKISTALHTFDSHKE----EVFQVGWNPKNETILASCCLG-RRLMVWDLSRID 351 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~~l~s~~~d-g~i~iwd~~~~~ 351 (424)
.+|....++++- .||.|.+|| .++...++..+...+. .+..++|+|....+|++.+.| ++|+++|+....
T Consensus 203 Vdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 203 VDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred ecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 888555556554 499999999 7776666666554333 499999999877778888775 679999987543
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.3e-07 Score=88.43 Aligned_cols=197 Identities=10% Similarity=0.016 Sum_probs=119.0
Q ss_pred CeeeEEecCCCCceEEEEeC---CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC--CeEEE
Q 014472 180 EGYGLSWSKFKEGHLLSGSD---DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD--QYLLI 254 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d--g~i~i 254 (424)
......|+|++..+++..+. +..|.++|+.++.. ..+....+......|+|+++.++.+.+.+ ..|.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 67789999999853444333 35688889876632 11222344556678999998887666544 46888
Q ss_pred EECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcE
Q 014472 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 255 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 332 (424)
+|+..+. ...+..+........|+|+|+.++++....+ .|.+.|+.. +.. ..+...... ...|+|+|+.+
T Consensus 262 ~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 262 YDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHGKN--NSSVSTYKNYI 333 (419)
T ss_pred EECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCCCc--CceECCCCCEE
Confidence 8887654 2333333333445689999997776665555 577778775 332 222211111 24899999876
Q ss_pred EEEEeCC--------CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCc--EEEE
Q 014472 333 LASCCLG--------RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI--LQIW 402 (424)
Q Consensus 333 l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--i~iw 402 (424)
+++.... ..|.+.|+..+.. +.+. .. .......|+|+|+.++.+....+. +.+.
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~------------~~LT---~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYI------------RRLT---AN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCe------------EECC---CC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 6665443 2577777765421 2121 11 123358899999966555544444 5566
Q ss_pred ecCCC
Q 014472 403 QMAEN 407 (424)
Q Consensus 403 ~~~~~ 407 (424)
++..+
T Consensus 398 ~l~g~ 402 (419)
T PRK04043 398 RLNYN 402 (419)
T ss_pred ecCCC
Confidence 66554
No 275
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=8.3e-08 Score=89.79 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=118.7
Q ss_pred CceeEEEecCCCCcEEEEEec---CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC-
Q 014472 126 GEVNRARYMPQNPFLIATKTV---SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg- 201 (424)
+.+...+|+|++..+++..+. ...|+++|+.+ + ....+....+......|+|++..++++.+.++
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t--------g---~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT--------G---KKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC--------C---cEEEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 466789999999754553332 35788888876 1 12333334555667889999986666665554
Q ss_pred -cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC--eEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 202 -QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ--YLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 202 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.|.++|+.++.. ..+..+........|+|+|+.++.+....+ .|.++|+.++.. ..+..... ..
T Consensus 257 ~~Iy~~dl~~g~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----~rlt~~g~--~~ 323 (419)
T PRK04043 257 PDIYLYDTNTKTL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----EQVVFHGK--NN 323 (419)
T ss_pred cEEEEEECCCCcE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----EeCccCCC--cC
Confidence 577778765521 122223322345689999988776655444 577788876553 11111111 12
Q ss_pred EEecCCCCeEEEEEeCC--------CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe--EEEeeCC
Q 014472 279 LAFNPFNEWILATGSTD--------KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR--LMVWDLS 348 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~--i~iwd~~ 348 (424)
..|+|+|+.++++.... ..|.+.|+.. +. ...+... .......|+|+|+.++++....+. +.+.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 48999999766665543 3678888876 32 3334332 233468999999876666554444 4444553
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=6.3e-07 Score=75.50 Aligned_cols=239 Identities=10% Similarity=0.077 Sum_probs=132.5
Q ss_pred EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---CCeeeEEecCCCCceEEEEeCCCcEEEEe
Q 014472 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---TEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 131 i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 207 (424)
++.+++|+ +||. -.|..|.|-..... -...+.+..-.+ -.-.-++|+|++. +||.+...|+|+++|
T Consensus 3 ~~~~~~Gk-~lAi-~qd~~iEiRsa~Dd--------f~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGK-LLAI-LQDQCIEIRSAKDD--------FSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFD 71 (282)
T ss_pred eeecCCCc-EEEE-EeccEEEEEeccCC--------chheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEe
Confidence 45667776 6665 45677777665541 111122222222 2357899999888 899999999999999
Q ss_pred CCCCCCCCcccceeeee-cCCcceeeEEeeCCC-----CcEEEEEeCCCeEEEEECCCC--CCCCCeeEe---cccCCCe
Q 014472 208 INAAPKNKSLEAMQIFK-VHEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTP--SVSKPVQSV---VAHQSEV 276 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~-----~~~~~s~~~dg~i~i~d~~~~--~~~~~~~~~---~~~~~~v 276 (424)
+..... ..+.+..... .-...|..+.|.+.. ...|.+-...|.++-|-+..+ +..+....+ ..+...|
T Consensus 72 l~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 72 LMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred ccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 975322 2222211111 123466667665432 234446677888887765322 222222232 2246789
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEE-EEEeCCCe------EEEeeCCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETIL-ASCCLGRR------LMVWDLSR 349 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~s~~~dg~------i~iwd~~~ 349 (424)
+++.++|..+ +|++|+.... .. + .-.+....+++-..-.+.+++. ++...|+. ..+|.+-+
T Consensus 151 ~~~vy~p~h~-LLlVgG~~~~------~~-~----~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 151 NSAVYHPKHR-LLLVGGCEQN------QD-G----MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred eEEEEcCCCC-EEEEeccCCC------CC-c----cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 9999999776 5555554321 00 0 0112233344333333333222 22222221 12333222
Q ss_pred CCcccCCCccCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 350 IDEEQTPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
-.++.. ......|..+..+|+|. +||+...+|.|.+|++..-..
T Consensus 219 ---------------~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 219 ---------------FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ---------------eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchh
Confidence 112221 22356799999999999 899999999999999987544
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=1.6e-07 Score=84.38 Aligned_cols=251 Identities=14% Similarity=0.061 Sum_probs=140.5
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEe---------cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-------CCC
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKT---------VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-------STE 180 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~ 180 (424)
+++.++.-......+ ++|+++.+.++.+ .+..|.+||..+ .+....+.-- ...
T Consensus 38 ~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t----------~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 38 RVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT----------HLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc----------CcEEeEEccCCCchhhccCc
Confidence 334444433333344 9999987777777 689999999988 3434333321 223
Q ss_pred eeeEEecCCCCceEEEEe-C-CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECC
Q 014472 181 GYGLSWSKFKEGHLLSGS-D-DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
...++++|+|+ +|++.. . +..|.+.|+.+++....+ .. .+...-...++. .++ +-+.||......+.
T Consensus 107 ~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei------~v-p~~~~vy~t~e~-~~~--~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 107 PWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMM------DV-PDCYHIFPTAND-TFF--MHCRDGSLAKVGYG 175 (352)
T ss_pred cceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEE------eC-CCCcEEEEecCC-ccE--EEeecCceEEEEec
Confidence 34789999998 455444 4 789999999877432222 11 111111111111 111 22344444443332
Q ss_pred CCCCCC--CeeEecc-----cCCCeeEEEecC-CCCeEEEEEeCCCcEEEEECCCC----CCcceeecC-------CCCC
Q 014472 259 TPSVSK--PVQSVVA-----HQSEVNCLAFNP-FNEWILATGSTDKTVKLFDLRKI----STALHTFDS-------HKEE 319 (424)
Q Consensus 259 ~~~~~~--~~~~~~~-----~~~~v~~i~~~~-~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~-------~~~~ 319 (424)
...... ....+.. ...+ .|.+ ++.. +.+... |.|.+.|+... ..++..+.. ..+.
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~-~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRL-VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred CCCceEEeeeeeecCCccccccCC----ceEcCCCcE-EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 211100 0001111 0112 3445 6764 444444 99999996542 222222221 2334
Q ss_pred EEEEEEcCCCCcEEEEEe---------CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCC-cE
Q 014472 320 VFQVGWNPKNETILASCC---------LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED-WV 389 (424)
Q Consensus 320 v~~~~~sp~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~ 389 (424)
+.-++++|+++.+++... ..+.|.++|..+. +.+..+.. ...+..++++|+++ .+
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~--------------kvi~~i~v-G~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG--------------KRLRKIEL-GHEIDSINVSQDAKPLL 314 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC--------------eEEEEEeC-CCceeeEEECCCCCeEE
Confidence 455999999987665332 1257999999875 33333322 23689999999999 65
Q ss_pred EEEEeCCCcEEEEecCCCCCC
Q 014472 390 ISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 390 l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+++...++.|.+.|..++...
T Consensus 315 yvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEE
Confidence 556557899999999888543
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.08 E-value=7.8e-10 Score=90.88 Aligned_cols=208 Identities=12% Similarity=0.154 Sum_probs=122.0
Q ss_pred eeeEEecCCCCceEEEEeCCCcEEEEeCCCCC------CCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE
Q 014472 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAP------KNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i 254 (424)
+..+.+.... .|+++..++.+.......+. ....+.+...+..|..+-.+-..+-.+. -+++++.||.+.+
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 4455554322 36666666555544433221 1112223333333443222222222222 3579999999999
Q ss_pred EECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe-----CCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCC
Q 014472 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS-----TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 255 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 329 (424)
++.+.... .......-...-.+.+....+. ++.++. .-+..+.|+++..+..+..... ...|++++-+|..
T Consensus 116 ~s~~~~~~--~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 116 FSTDKDLA--LMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ 191 (319)
T ss_pred EechHHHh--hhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCccc
Confidence 99876211 1111111111122233333344 233332 1235667777653333322232 2349999999999
Q ss_pred CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCC
Q 014472 330 ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 408 (424)
++++++|+.||.+.+||.++.. .+...+..|+.+|+.+.|+|..+--|.++++||.+-.||-++..
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred ccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 8999999999999999999853 22334568999999999999877678899999999999998643
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.6e-08 Score=89.52 Aligned_cols=248 Identities=17% Similarity=0.304 Sum_probs=145.3
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC--------
Q 014472 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD-------- 199 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-------- 199 (424)
=+-++|||.|. +|+|--..| |.+|--.+ ...+..+. |. .|.-+.|||... +|+|-+.
T Consensus 213 etyv~wSP~GT-YL~t~Hk~G-I~lWGG~~----------f~r~~RF~-Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQG-IALWGGES----------FDRIQRFY-HP-GVQFIDFSPNEK-YLVTYSPEPIIVEED 277 (698)
T ss_pred eeeEEecCCce-EEEEEeccc-eeeecCcc----------HHHHHhcc-CC-CceeeecCCccc-eEEEecCCccccCcc
Confidence 45689999997 788866555 88998665 33333333 54 477899999877 7888542
Q ss_pred ---CCcEEEEeCCCCCCCCcccc---------------------------eeee--------ec---CCcceeeEEeeCC
Q 014472 200 ---DAQICLWDINAAPKNKSLEA---------------------------MQIF--------KV---HEGVVEDVAWHLR 238 (424)
Q Consensus 200 ---dg~i~vwd~~~~~~~~~~~~---------------------------~~~~--------~~---~~~~v~~i~~~~~ 238 (424)
...++|||+.++.....+.. +..+ .. .-..|....|+|.
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCC
Confidence 25799999999865433311 0000 00 1234556677776
Q ss_pred CCcEEEEEe----------------CCCe-----------------------------------------EEEEECCCCC
Q 014472 239 HEYLFGSVG----------------DDQY-----------------------------------------LLIWDLRTPS 261 (424)
Q Consensus 239 ~~~~~~s~~----------------~dg~-----------------------------------------i~i~d~~~~~ 261 (424)
+. +||-=. .... +-|+.++...
T Consensus 358 ~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 358 SN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred cc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 53 433100 0011 1111111111
Q ss_pred CCCCeeEecccCCCeeEEEecCCCCeEEEEEeC--CCcEEEEECCC-CCCcceeecCCCCCEEEEEEcCCCCcEEEEE--
Q 014472 262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGST--DKTVKLFDLRK-ISTALHTFDSHKEEVFQVGWNPKNETILASC-- 336 (424)
Q Consensus 262 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~--dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~-- 336 (424)
. ++..+ .-...|...+|.|.|..+.+..+. ..++++|-+.+ ...+-..........+.+.|+|.|+.+++++
T Consensus 437 I--pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 437 I--PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred C--Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec
Confidence 1 11111 134567889999999864443333 35789998873 2333222222346778999999997544433
Q ss_pred eCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe------CCCcEEEEecCCCCC
Q 014472 337 CLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA------EDNILQIWQMAENIY 409 (424)
Q Consensus 337 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~i~iw~~~~~~~ 409 (424)
|..|.+.++|+...... ......|. ..+.+.|.|.|+| +++++ .|.--+||+++...+
T Consensus 514 s~~g~l~F~D~~~a~~k-------------~~~~~eh~-~at~veWDPtGRY-vvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 514 SRRGDLEFYDTDYADLK-------------DTASPEHF-AATEVEWDPTGRY-VVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ccccceEEEecchhhhh-------------hccCcccc-ccccceECCCCCE-EEEeeehhhhccccceEEEEeecHHH
Confidence 44788999999752111 11112333 3678999999997 44544 366688999887654
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=3.9e-09 Score=89.02 Aligned_cols=222 Identities=18% Similarity=0.293 Sum_probs=145.0
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC------------cceeeEEeeCC-CCcEEE
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE------------GVVEDVAWHLR-HEYLFG 244 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------~~v~~i~~~~~-~~~~~~ 244 (424)
...|+++.|...|. +|++|...|.|.+|.-.... ....+....+++|. ..|+.|.|..+ ++.-|.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45689999988777 89999999999999865432 22233334455553 35778888654 444566
Q ss_pred EEeCCCeEEEEECCCCCCC---------------------------------------CCeeEe-cccCCCeeEEEecCC
Q 014472 245 SVGDDQYLLIWDLRTPSVS---------------------------------------KPVQSV-VAHQSEVNCLAFNPF 284 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~---------------------------------------~~~~~~-~~~~~~v~~i~~~~~ 284 (424)
..+.|.+|++|.+...... ++.... .+|.-.|++++|+.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 7789999999988653100 011111 456777899999998
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcce--eecCCC-----CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC-
Q 014472 285 NEWILATGSTDKTVKLFDLRKISTALH--TFDSHK-----EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP- 356 (424)
Q Consensus 285 ~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~-----~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~- 356 (424)
.+. +++ ..|-.|.+|.+........ .++.|. .-|++..|+|..-.++.-.+..|.|++-|++....-...
T Consensus 184 ~et-~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 184 KET-LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred hhe-eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 884 444 4577899999876444332 233443 368999999988778888888999999999853211000
Q ss_pred ---CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 357 ---EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 357 ---~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
....++. -.--+.+-...|.++.|+++|++ |++-+ =.+|+|||+.-.
T Consensus 262 klfe~~~D~v--~~~ff~eivsSISD~kFs~ngry-IlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 262 KLFELTIDGV--DVDFFEEIVSSISDFKFSDNGRY-ILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred hhhhhccCcc--cchhHHHHhhhhcceEEcCCCcE-EEEec-cceEEEEecccc
Confidence 0000000 00111222456899999999994 66654 468999998643
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=2.1e-06 Score=75.00 Aligned_cols=224 Identities=14% Similarity=0.102 Sum_probs=143.1
Q ss_pred EEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCC
Q 014472 130 RARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDIN 209 (424)
Q Consensus 130 ~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 209 (424)
++.|.+....++.+....+.|+.|+... .....+... . ..++++...+. .|+.+...+ +.++|+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~~~~~~~~-~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GEVEVIDLP-G-PNGMAFDRPDG-RLYVADSGG-IAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-----------TEEEEEESS-S-EEEEEEECTTS-EEEEEETTC-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-----------CeEEEEecC-C-CceEEEEccCC-EEEEEEcCc-eEEEecC
Confidence 5788885556888887889999999876 112222222 2 67788873333 466666644 5555887
Q ss_pred CCCCCCcccceeeee--c-CCcceeeEEeeCCCCcEEEEEeCC--------CeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 210 AAPKNKSLEAMQIFK--V-HEGVVEDVAWHLRHEYLFGSVGDD--------QYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 210 ~~~~~~~~~~~~~~~--~-~~~~v~~i~~~~~~~~~~~s~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
++.. ..+.... . .....+++++.++|. ++++.... |.|..++.. ++ +..+...-...+.
T Consensus 69 ~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~~~~~~~pNG 138 (246)
T PF08450_consen 69 TGKV----TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVVADGLGFPNG 138 (246)
T ss_dssp TTEE----EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEEEEEESSEEE
T ss_pred CCcE----EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce----EEEEecCcccccc
Confidence 6522 2222221 1 346789999999987 66565433 557777776 33 2333333456789
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCC------cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKIST------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
|+|+|+++.++++-+..+.|..|++..... .+..+....+..-.+++..+|. +.++....+.|.+++.. +
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-- 214 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-- 214 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S--
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c--
Confidence 999999997777888889999999975333 1122222223478899999995 77777778899999987 3
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEe-CCCCCcEEEEEe
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSW-NPCEDWVISSVA 394 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~ 394 (424)
+++..+.-....+++++| .++...|++|.+
T Consensus 215 ------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 215 ------------KLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 334444333447899999 467666777754
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.7e-07 Score=97.25 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=134.9
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----------------CCCCeeeEEecCC
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----------------HSTEGYGLSWSKF 189 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~l~~~~~ 189 (424)
....|++.+++..++++-...+.|+++|..+. .+.++.+ .-....+++++|+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~ 693 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV 693 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC
Confidence 35778888877645555555678999987651 1111111 0113468999996
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccc---eeeee------cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC
Q 014472 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEA---MQIFK------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
+..++++.+.++.|++||..++... .+.. ..... ..-...+.|+++|++..++++-+.++.|++||+.++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 5556777778899999998765210 0000 00000 011345679999999888888888999999999865
Q ss_pred CCCC----------CeeEecc--------cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC-------
Q 014472 261 SVSK----------PVQSVVA--------HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS------- 315 (424)
Q Consensus 261 ~~~~----------~~~~~~~--------~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------- 315 (424)
.... ....+.. .-.....++++++|. ++++-..++.|++||..+ +.. .++.+
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t-g~v-~tiaG~G~~G~~ 849 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT-KRV-TTLAGTGKAGFK 849 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC-CeE-EEEeccCCcCCC
Confidence 4200 0000000 011346889999887 788888899999999876 322 22221
Q ss_pred -------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 316 -------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 316 -------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.-.....++++++|. ++++.+.++.|++||+.+..
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCCc
Confidence 123567899999995 78888889999999998764
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=1.2e-07 Score=78.73 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=126.5
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
+|+.|+.-|...+|...+.+. .+.....|...|+-+.=..+...-+..++.|.++++.++..+.....++. .
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~-----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~ 157 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDG-----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---Q 157 (344)
T ss_pred EEEeccccceeeeecccCccc-----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---c
Confidence 699999999999999986532 12222333333322211111112233567888888888876553222211 1
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCccee--ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT--FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.-.+++++++++++ ++++.+....|..|.+...+..+.. ....+..-.+..|+.... .+|++..||++.|||++..
T Consensus 158 ~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence 12388999999998 5888888899999999875544333 223345567889998885 6999999999999999987
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCc-EEEEEeCCCcEEEEecCCC
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-VISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~ 407 (424)
...... ...+...|.+.+..+.|++-|.. ||.-.-.=+.+.+-|+.+.
T Consensus 236 ~tpm~~---------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 236 ATPMAE---------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ccchhh---------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 543211 11122358889999999986642 3333333567888888776
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.3e-08 Score=86.45 Aligned_cols=222 Identities=14% Similarity=0.107 Sum_probs=132.7
Q ss_pred CCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC
Q 014472 169 SPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 169 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~ 248 (424)
++..-+.+|...|.+++|+|...+++..++.+..|+|.|+++... ...+..+ ..+++++|.-+..+.+.+|-.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEecc
Confidence 334456678889999999999888899999999999999987632 3444445 789999999999999999999
Q ss_pred CCeEEEEECCCCCCCCCeeEecc--cCCCeeEEEec------CCCCeEEEEEeCCCcEEEEECCCCC-Ccceeec-CCCC
Q 014472 249 DQYLLIWDLRTPSVSKPVQSVVA--HQSEVNCLAFN------PFNEWILATGSTDKTVKLFDLRKIS-TALHTFD-SHKE 318 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~i~~~------~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~-~~~~ 318 (424)
.|.|.|||+|..+. ++..+.+ ...+|..++.- +.+. +|+..+.+ +..|.+.... .+..+.. ...+
T Consensus 257 nG~VlvyD~R~~~~--~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEG--PLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred CceEEEEEccCCCc--hHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 99999999998764 2222222 23455554432 2343 34444332 5566654311 1122222 2255
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCe---EEEeeCCCCCcccCCCccCCCCCeeeEEEcCC----CC---CcceEEeCCCCCc
Q 014472 319 EVFQVGWNPKNETILASCCLGRR---LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGH----TS---KISDFSWNPCEDW 388 (424)
Q Consensus 319 ~v~~~~~sp~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~---~v~~~~~~~~~~~ 388 (424)
...+++.++....+|++.-.+.+ ++.-=.+.. ..++.+.+ ..-.++ .. .-..+.-.++.++
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d--------~~dG~pVc-~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRID--------FRDGFPVC-GKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeec--------cccCceee-eecccccCCcccccccccceeccccccE
Confidence 67777777766667776655311 110000000 00010000 000111 00 0111222455677
Q ss_pred EEEEEeCCCcEEEEecCCCCCCC
Q 014472 389 VISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
++..++..+.+.+||+.+..+..
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCcceeEEeccchhheee
Confidence 77888888999999999876543
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=3.6e-07 Score=93.19 Aligned_cols=278 Identities=17% Similarity=0.221 Sum_probs=161.5
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCC--------CCCC-----------------CCC-C
Q 014472 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKH--------PSKP-----------------PLD-G 166 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~--------~~~~-----------------~~~-~ 166 (424)
...++++-. -...|.+++||||+. +||..+.++++.+-...-. .... ++. +
T Consensus 110 ~~~~E~VG~--vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~g 186 (928)
T PF04762_consen 110 EDEIEIVGS--VDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAG 186 (928)
T ss_pred CceeEEEEE--EcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchh
Confidence 344454443 367899999999997 7777788888887653210 0000 000 0
Q ss_pred C------CCCc------EEEecCCCCeeeEEecCCCCceEEEEeC---C---CcEEEEeCCCCCCCCcccceeeeecCCc
Q 014472 167 A------CSPD------LRLRGHSTEGYGLSWSKFKEGHLLSGSD---D---AQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 167 ~------~~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
+ ..+. ..+. +...-..|+|..||. ++|+.+. . ..++||+-+ +... .....-.+
T Consensus 187 K~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~------stSE~v~g 257 (928)
T PF04762_consen 187 KAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQ------STSEPVDG 257 (928)
T ss_pred hhhhhhccCCCCCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEE------eccccCCC
Confidence 0 0000 1122 334557899999998 7877664 2 579999875 2111 11111223
Q ss_pred ceeeEEeeCCCCcEEEEEeC---CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 229 VVEDVAWHLRHEYLFGSVGD---DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
--..++|.|.|+ ++|+... ...|.+|.-..-+.......+......|..++|++++. +||.-..|. |.+|-..+
T Consensus 258 Le~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 258 LEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeC
Confidence 345789999996 6666543 34566665433221110111123456799999999998 788876555 99998876
Q ss_pred CCCc-ceeecC-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC----CCCccc-----------------C-CCccCC
Q 014472 306 ISTA-LHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLS----RIDEEQ-----------------T-PEDAED 361 (424)
Q Consensus 306 ~~~~-~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~----~~~~~~-----------------~-~~~~~~ 361 (424)
..-. .+.+.. ....+..+.|+|..+..|...+.+|.+..+++. ...... + .....-
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V 414 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV 414 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence 3211 122222 233455699999888778788776777655442 221100 0 000001
Q ss_pred CCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 362 GPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 362 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.||-..+.+. -...|.+++|++++. .+++-..||.|.+|.....
T Consensus 415 PPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 415 PPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCC
Confidence 1222223332 346799999999988 4777888999999996554
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.5e-09 Score=96.93 Aligned_cols=217 Identities=16% Similarity=0.236 Sum_probs=140.9
Q ss_pred cEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCC-CCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 171 DLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPK-NKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 171 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
...+.+|...|..++-..+.+ -+++++.|.+|++|.++.... ..+..+..+++.|..+|.++.|..+.+++ ++.|
T Consensus 728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i---~ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI---ASCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee---eecc
Confidence 456778999998887665555 599999999999999975432 23334566788899999999999876543 3568
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCCCcceee-----cCCCCCEEE
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKISTALHTF-----DSHKEEVFQ 322 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~ 322 (424)
|.|.+||.-.+.....+..-..| +.+..+..-++ .+.++.+| +...+|+++|.|. ..-...+ .+.+..+.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred CcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeE
Confidence 99999998655432111111112 23333333332 23344444 7788999999997 4433333 244567899
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEE-
Q 014472 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQI- 401 (424)
Q Consensus 323 ~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i- 401 (424)
++..+.|. .++++-..|+|.+.|.+++.. +...+.-.-....++ .|..+ .++....|.++.|
T Consensus 882 iaVa~~GN-~lAa~LSnGci~~LDaR~G~v--------------INswrpmecdllqla-apsdq-~L~~saldHslaVn 944 (1034)
T KOG4190|consen 882 IAVADKGN-KLAAALSNGCIAILDARNGKV--------------INSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVN 944 (1034)
T ss_pred EEeccCcc-hhhHHhcCCcEEEEecCCCce--------------eccCCcccchhhhhc-CchhH-HHHhhcccceeEee
Confidence 99999996 688999999999999998742 211111111122222 24444 4666666777777
Q ss_pred EecCCCCCC
Q 014472 402 WQMAENIYH 410 (424)
Q Consensus 402 w~~~~~~~~ 410 (424)
|...+++..
T Consensus 945 Whaldgimh 953 (1034)
T KOG4190|consen 945 WHALDGIMH 953 (1034)
T ss_pred ehhcCCeee
Confidence 777666543
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=2.8e-07 Score=77.58 Aligned_cols=202 Identities=14% Similarity=0.204 Sum_probs=112.1
Q ss_pred eeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe-cCCCCeeeEEecCCC-----CceEEEEeCCC
Q 014472 128 VNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR-GHSTEGYGLSWSKFK-----EGHLLSGSDDA 201 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-----~~~l~s~~~dg 201 (424)
=..++|+||+. +||.+...|+|++||+....... ..+..... .-...|.++.|.+.. ...|++-...|
T Consensus 46 WRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~-----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 46 WRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFV-----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred heEEEECCCCc-EEEEEcCCCeEEEEecccceeEE-----cCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 34699999987 89999999999999987521110 00001011 123456677775543 22477777888
Q ss_pred cEEEEeCCCCCCCCcccceeee---ecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 202 QICLWDINAAPKNKSLEAMQIF---KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
.++-|-+..+.. ...+....+ ..+...|+++.++|..+.+++.|.....-... .+....+++
T Consensus 120 ~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s--------------~a~~~GLta 184 (282)
T PF15492_consen 120 QLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS--------------KASSCGLTA 184 (282)
T ss_pred eeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc--------------cccccCceE
Confidence 888877643211 111222222 23467899999999987666555444310000 011223333
Q ss_pred EEecCCCCeEEEE-EeCCCc------EEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 279 LAFNPFNEWILAT-GSTDKT------VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 279 i~~~~~~~~~l~~-g~~dg~------i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
-..-.+.+++..+ ...|+. ..+|.+-+ .............|..+..||+|. +||+...+|.|.+|++....
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcch
Confidence 3322222222211 111211 12232221 011111122467899999999996 89999999999999998765
Q ss_pred c
Q 014472 352 E 352 (424)
Q Consensus 352 ~ 352 (424)
.
T Consensus 263 ~ 263 (282)
T PF15492_consen 263 L 263 (282)
T ss_pred h
Confidence 4
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3e-09 Score=90.97 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=110.0
Q ss_pred EEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----CCcceeecCCCCCE
Q 014472 245 SVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----STALHTFDSHKEEV 320 (424)
Q Consensus 245 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~v 320 (424)
+.+.+..|-+-|+.++-. +.+. .++.|.++.|...++ ++..|..+|.|..+|+|.. +.+.+.+ .|.+.|
T Consensus 229 s~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv 301 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV 301 (425)
T ss_pred cccccceeEEEEeecccc----cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence 556677888999988653 2232 578899999998776 8999999999999999974 2333333 488999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceE--EeCCCCCcEEEEEeCCCc
Q 014472 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF--SWNPCEDWVISSVAEDNI 398 (424)
Q Consensus 321 ~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~~~d~~ 398 (424)
+++..-...++.|++.+.+|+|++||++..++. .-+..+.||...-.-+ ..++... +++++|+|..
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~-----------~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcy 369 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCK-----------KSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCY 369 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcc-----------cceeeeecccccccccccccccccc-eEEEccCeeE
Confidence 999887744467889999999999999976432 2366778886543333 3345555 7888999999
Q ss_pred EEEEecCCCCC
Q 014472 399 LQIWQMAENIY 409 (424)
Q Consensus 399 i~iw~~~~~~~ 409 (424)
.+||.+..+.+
T Consensus 370 tRiWsl~~ghL 380 (425)
T KOG2695|consen 370 TRIWSLDSGHL 380 (425)
T ss_pred EEEEecccCce
Confidence 99999997754
No 289
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=1.2e-06 Score=78.42 Aligned_cols=196 Identities=11% Similarity=0.078 Sum_probs=127.9
Q ss_pred cCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcE---EEecCCCCeeeEE-ecCCCCceEEEEeCCCcEEEEeCC
Q 014472 134 MPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDL---RLRGHSTEGYGLS-WSKFKEGHLLSGSDDAQICLWDIN 209 (424)
Q Consensus 134 ~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~-~~~~~~~~l~s~~~dg~i~vwd~~ 209 (424)
+.+|+.++. +..|.|++||..+...+.-..+ .+.. .......+..-+. |++....+++..|. |...|.+..
T Consensus 275 nsDGkrIvF--q~~GdIylydP~td~lekldI~--lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 275 NSDGKRIVF--QNAGDIYLYDPETDSLEKLDIG--LPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred CCCCcEEEE--ecCCcEEEeCCCcCcceeeecC--CccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence 346665554 4568899999876322110000 0110 0000111111122 44444447777775 677777765
Q ss_pred CCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC-eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeE
Q 014472 210 AAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ-YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI 288 (424)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 288 (424)
.+. ....+|.+.|.-..+..+.. -++.|..|| .+-|+|.++++ +..+...-+.|.++..+|+|++
T Consensus 350 ~~~--------~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~- 415 (668)
T COG4946 350 DGY--------SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKK- 415 (668)
T ss_pred CCe--------eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcE-
Confidence 441 11234677788878777766 456888888 89999999876 3455556788999999999984
Q ss_pred EEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC----eEEEeeCCCC
Q 014472 289 LATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----RLMVWDLSRI 350 (424)
Q Consensus 289 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg----~i~iwd~~~~ 350 (424)
++.+.....|-+.|+.+ +.+...-+...+-|+.+.|||+++ ++|-+--+| .|+++|+..+
T Consensus 416 ~vvaNdr~el~vididn-gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 416 VVVANDRFELWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEcCceEEEEEEecC-CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCC
Confidence 77787788999999998 554444445567899999999996 677776555 5899999874
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=1e-06 Score=78.87 Aligned_cols=260 Identities=12% Similarity=0.138 Sum_probs=158.7
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
-+++|.+.|.-.++.-++. -++.|..|| .+-|||... .....+...-+.|.++..+++|. .++++.
T Consensus 354 iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-----------~e~kr~e~~lg~I~av~vs~dGK-~~vvaN 420 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-----------GEVKRIEKDLGNIEAVKVSPDGK-KVVVAN 420 (668)
T ss_pred EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-----------ceEEEeeCCccceEEEEEcCCCc-EEEEEc
Confidence 3567888899988888776 688889999 999999987 23455666778899999999998 688888
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC----eEEEEECCCCCCCCCeeEecccCC
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----YLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
....|-+.|+.++.. ...-+...+-|+.+.|||+++ .+|-+--+| .|+++|+..++ +.......+
T Consensus 421 dr~el~vididngnv------~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K----iy~vTT~ta 489 (668)
T COG4946 421 DRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK----IYDVTTPTA 489 (668)
T ss_pred CceEEEEEEecCCCe------eEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe----EEEecCCcc
Confidence 888899999988743 111223457899999999987 456655544 58999998866 333333344
Q ss_pred CeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcce-ee---------------cCCCC---------CEEEE
Q 014472 275 EVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTALH-TF---------------DSHKE---------EVFQV 323 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~-~~---------------~~~~~---------~v~~~ 323 (424)
.=.+-+|.|+++++...+. .|..+.=+......+|.. .+ ....+ .+.-+
T Consensus 490 ~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~ 569 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPF 569 (668)
T ss_pred cccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhccccccc
Confidence 4566788898886433322 233332222211111110 00 00000 01001
Q ss_pred EEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC-CccCCCCCeeeEEEcC-----CCCCcceEEeCCCCCcEEEEEeCCC
Q 014472 324 GWNPKNETILASCCLGRRLMVWDLSRIDEEQTP-EDAEDGPPELLFIHGG-----HTSKISDFSWNPCEDWVISSVAEDN 397 (424)
Q Consensus 324 ~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d~ 397 (424)
-.. .+....+++-.+|.|.++...-.++.... ...........+.+.. -...+.++..|+|+..+++ -.||
T Consensus 570 pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv--k~d~ 646 (668)
T COG4946 570 PVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV--KLDG 646 (668)
T ss_pred ccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE--EeCC
Confidence 111 12334556667777777776554432211 1100000111122211 1346899999999997665 6899
Q ss_pred cEEEEecCC
Q 014472 398 ILQIWQMAE 406 (424)
Q Consensus 398 ~i~iw~~~~ 406 (424)
.++++++..
T Consensus 647 kl~~f~vek 655 (668)
T COG4946 647 KLRLFDVEK 655 (668)
T ss_pred eEEEEeccc
Confidence 999999976
No 291
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-07 Score=81.95 Aligned_cols=248 Identities=10% Similarity=0.104 Sum_probs=144.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.|...|..++|+|.+..++..++.+..|.|.|+.+ ......+..+ ..+++++|.-+..+++.+|...|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet----------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET----------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEeccc----------ceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 46678999999998877899999999999999998 3334455556 789999999999889999999999
Q ss_pred EEEEeCCCCCCCCcccceeeee--cCCcceeeEEe------eCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC
Q 014472 203 ICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAW------HLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~i~~------~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
|.+||++..... +..+. ....+|..++. .+.+. +++.... .+..|.+.-.....+...-....+
T Consensus 260 VlvyD~R~~~~~-----~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 260 VLVYDMRQPEGP-----LMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred EEEEEccCCCch-----HhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 999999876431 11111 11233443332 22332 3333222 255666654332122211123356
Q ss_pred CeeEEEecCCCCeEEEEEeCCCc------EEE-EECCCCCCccee-ecCC-CCC-----EEEEEE-cCCCCcEEEEEeCC
Q 014472 275 EVNCLAFNPFNEWILATGSTDKT------VKL-FDLRKISTALHT-FDSH-KEE-----VFQVGW-NPKNETILASCCLG 339 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~------i~i-wd~~~~~~~~~~-~~~~-~~~-----v~~~~~-sp~~~~~l~s~~~d 339 (424)
...+++.++..+++|++.-.+.+ |-. -|-+. +.++.. -..+ .+. -+...+ .++...++..+...
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 67778888777777777655321 111 01111 111111 1111 100 111222 34444455566677
Q ss_pred CeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCC-CCCcEEEEEeCCCcEEEEecCC
Q 014472 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP-CEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 340 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
+.+.+||..+... +..+. -..+|.+++... ++..+|+. -.|..++|++.+.
T Consensus 411 n~lil~D~~s~ev--------------vQ~l~-~~epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 411 NELILQDPHSFEV--------------VQTLA-LSEPVLDICPNDTNGSSYLAL-LTDDRVHIYKNES 462 (463)
T ss_pred ceeEEeccchhhe--------------eeecc-cCcceeecceeecCCcchhhh-eecceEEEEecCC
Confidence 8899999998643 22222 135677776543 34334554 3577899987653
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=2.1e-07 Score=88.02 Aligned_cols=272 Identities=18% Similarity=0.187 Sum_probs=172.5
Q ss_pred EEEe-ccCCceeEEEecCC-----------CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEe
Q 014472 119 IQQI-NHDGEVNRARYMPQ-----------NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW 186 (424)
Q Consensus 119 ~~~~-~h~~~v~~i~~~p~-----------~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 186 (424)
++.+ .|+..|+.++|.|- ...+||++...|.|.+||... ...+..+..|..++..++|
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----------~s~~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----------ASVINWLSHSNDSVQDLCW 117 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----------hhhhhhhcCCCcchhheee
Confidence 3444 36789999999772 234788999999999999987 4556667888999999999
Q ss_pred cCC---CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-
Q 014472 187 SKF---KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV- 262 (424)
Q Consensus 187 ~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~- 262 (424)
-+. ...+|++-....++.+|+..+++...+ +........|+.+.|.+..-|..-+..|.+.+.+.-....
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCCceeec------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 764 224677777778999999998865332 2223456677999997766666667778877776542211
Q ss_pred ---CCCeeEecccCC----------------C---------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec
Q 014472 263 ---SKPVQSVVAHQS----------------E---------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 263 ---~~~~~~~~~~~~----------------~---------v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 314 (424)
.+.++....|.. . .-.++|+|.-+++++.. .-..+.++|+.- ..++....
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~-~~~l~vvp 269 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEY-ECCLAVVP 269 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchh-hceeEEEE
Confidence 111111111211 0 12346788766655444 567899999987 67777777
Q ss_pred CCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEeeCCCCCcccCCCccC-----CCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014472 315 SHKEEVFQVGWNPKNE-TILASCCLGRRLMVWDLSRIDEEQTPEDAE-----DGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
...+.+.-+.|-|+++ ..|++...||.+.||-.+....+....... ......+.... .-.+....-.|..+.
T Consensus 270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~s 347 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPS 347 (1062)
T ss_pred eccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChh
Confidence 7777777888888653 368889999999999876543332221000 01112222222 122333444565433
Q ss_pred EEEEEeCCCcEEEEecCCCCCC
Q 014472 389 VISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
.++.--.+|.+.+|.+..+...
T Consensus 348 a~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 348 ALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred hhhhhhhcchhHHHhhhcCCcC
Confidence 3444445788999999976543
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=5e-08 Score=85.30 Aligned_cols=159 Identities=15% Similarity=0.199 Sum_probs=105.0
Q ss_pred EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEE--EEeCCCeEEEEECCCCC
Q 014472 184 LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFG--SVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 184 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--s~~~dg~i~i~d~~~~~ 261 (424)
+..++.+. +|+++..+....++++...... .+...... -....+.+.|..+....++ .+++...+.+|....+.
T Consensus 68 ~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGR-LVAVATSSKQRAVFDYRENPKG--AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccCCCce-EEEEEeCCCceEEEEEecCCCc--ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455454 6777777777777777655431 12222211 2223344444444444432 22334445555544322
Q ss_pred CCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-cCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 014472 262 VSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 262 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
...+-+|-+-++.|+|+|+++ +++++..|..|++-.... ...+..+ -+|+.-|..++.-++. .|++++.|+
T Consensus 144 ----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 144 ----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred ----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence 334458999999999999998 688999999999988776 3444444 4699999999999876 488999999
Q ss_pred eEEEeeCCCCCccc
Q 014472 341 RLMVWDLSRIDEEQ 354 (424)
Q Consensus 341 ~i~iwd~~~~~~~~ 354 (424)
+|++||+.++++..
T Consensus 216 tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 216 TLRLWDITSGKLLD 229 (390)
T ss_pred cEEEEecccCCccc
Confidence 99999999988654
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=3e-06 Score=86.66 Aligned_cols=251 Identities=15% Similarity=0.256 Sum_probs=152.4
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
..+.|.++.|.++.. -++.+..+|.|.+........ .........-...|.+++|||++. +|+....++++
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~-------~~~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l 144 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPD-------EDEIEIVGSVDSGILAASWSPDEE-LLALVTGEGNL 144 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCC-------CceeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEE
Confidence 346888999999876 466678899999994332100 122233334567899999999988 78888888888
Q ss_pred EEEeCCCC-----------------------CCCCcc-----c--------ce------eeeecCCcceeeEEeeCCCCc
Q 014472 204 CLWDINAA-----------------------PKNKSL-----E--------AM------QIFKVHEGVVEDVAWHLRHEY 241 (424)
Q Consensus 204 ~vwd~~~~-----------------------~~~~~~-----~--------~~------~~~~~~~~~v~~i~~~~~~~~ 241 (424)
.+.+-.-. ++...+ + +. ..+. +...-..|+|-.||.+
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence 77643210 000000 0 00 0111 3345567899999985
Q ss_pred EEEEEeC---C---CeEEEEECCCCCCCCCeeEe-cccCCCeeEEEecCCCCeEEEEEeC---CCcEEEEECCCCCCcce
Q 014472 242 LFGSVGD---D---QYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGST---DKTVKLFDLRKISTALH 311 (424)
Q Consensus 242 ~~~s~~~---d---g~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~ 311 (424)
+ |+.+. . ..++||+-. +. +... ..-.+--.+++|.|.|. ++|+... ...|.+|.-+....--.
T Consensus 224 F-AVss~~~~~~~~R~iRVy~Re-G~----L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 224 F-AVSSVEPETGSRRVIRVYSRE-GE----LQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred E-EEEEEEcCCCceeEEEEECCC-ce----EEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 4 45442 2 579999865 22 2221 12233345789999997 6777654 34577776443222112
Q ss_pred eec--CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEc-CCCCCcceEEeCCCCCc
Q 014472 312 TFD--SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-GHTSKISDFSWNPCEDW 388 (424)
Q Consensus 312 ~~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 388 (424)
.+. .....|..++|++++. +||....|. |.+|-..+..- -+...+. .....+..+.|+|..+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHW------------YLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHW------------YLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred ecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEE------------EEEEEEEccCCCCCCceEECCCCCC
Confidence 222 3456899999999996 788877665 99999887542 1111111 12233555899998876
Q ss_pred EEEEEeCCCcEEEEecC
Q 014472 389 VISSVAEDNILQIWQMA 405 (424)
Q Consensus 389 ~l~s~~~d~~i~iw~~~ 405 (424)
.|.....+|.+..+++.
T Consensus 363 ~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEEecCCcEEEEEEE
Confidence 67777766777655443
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=86.70 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=111.1
Q ss_pred ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeee
Q 014472 145 TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK 224 (424)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 224 (424)
+.+-.|.+-++.+ .....+. .++.|.++.|...++ +++.|+..|.|...|++......... ...+
T Consensus 231 G~sqqv~L~nvet-----------g~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~-a~rl- 295 (425)
T KOG2695|consen 231 GLSQQVLLTNVET-----------GHQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC-AQRL- 295 (425)
T ss_pred cccceeEEEEeec-----------ccccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc-eEEE-
Confidence 3456677778776 1222333 667899999998776 89999999999999998875444332 2222
Q ss_pred cCCcceeeEEeeC-CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE--EecCCCCeEEEEEeCCCcEEEE
Q 014472 225 VHEGVVEDVAWHL-RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL--AFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 225 ~~~~~v~~i~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~l~~g~~dg~i~iw 301 (424)
.|.+.|+++.... +++.+ .+.+.+|+|++||+|.-++.+.+..+.+|-..-.-+ ..++... .+++++.|...+||
T Consensus 296 yh~Ssvtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIW 373 (425)
T ss_pred EcCcchhhhhhhccccceE-eeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEE
Confidence 3889999998777 45544 577899999999999877666688888886543333 2345455 57789999999999
Q ss_pred ECCCCCCcceeecC
Q 014472 302 DLRKISTALHTFDS 315 (424)
Q Consensus 302 d~~~~~~~~~~~~~ 315 (424)
.++. +..+.++..
T Consensus 374 sl~~-ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDS-GHLLCTIPF 386 (425)
T ss_pred eccc-CceeeccCC
Confidence 9997 676666654
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=8.5e-08 Score=83.90 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=101.0
Q ss_pred eEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCC
Q 014472 232 DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKIS 307 (424)
Q Consensus 232 ~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~ 307 (424)
.+..++.+ .++|++..+....+++.+.... .+.+... .-...-+++.|..+... ...+..-| .+.+|....
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccce-EEEEeecCCceeeeeecccc--
Confidence 34445554 4667777777766776665432 2222222 12233344444444443 33333334 444444443
Q ss_pred CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCC
Q 014472 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCED 387 (424)
Q Consensus 308 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 387 (424)
.+...+-+|-+-++.++|+|+++ +++++..|..|+|-...... ..-.-.-||+..|..++.-++.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-------------~IesfclGH~eFVS~isl~~~~- 206 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-------------VIESFCLGHKEFVSTISLTDNY- 206 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-------------chhhhccccHhheeeeeeccCc-
Confidence 34455668999999999999996 78899999999997775421 1111234899999999998765
Q ss_pred cEEEEEeCCCcEEEEecCCCCCC
Q 014472 388 WVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 388 ~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+|+|+|.|++|++||+.++..-
T Consensus 207 -~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 207 -LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -eeeecCCCCcEEEEecccCCcc
Confidence 4889999999999999998643
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-06 Score=83.62 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=132.3
Q ss_pred EecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC-----cEEEE
Q 014472 132 RYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA-----QICLW 206 (424)
Q Consensus 132 ~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vw 206 (424)
+|++.+. .+|.|+.+|.|.+++-.- +....++++...+...-|.-++.++|++.+.|+ .+++|
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 3456554 899999999999888553 334556667666444445555655788877765 48999
Q ss_pred eCCCCCCCCcccce---eeee----cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC--CCCCCCCCeeEecccCCCee
Q 014472 207 DINAAPKNKSLEAM---QIFK----VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL--RTPSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 207 d~~~~~~~~~~~~~---~~~~----~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~v~ 277 (424)
+++.......-.++ +.+. ....++.+++.+.+- ..+|+|-.+|.|..+.- ......+ .........+|+
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pIT 175 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPIT 175 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCce
Confidence 99876433322222 1111 135678889998885 46789999999998842 2222111 222223467999
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.+++..++...+.++. -..|.+|.+.........+..|+.++.|..+++....++ +++.. .+.+|+....
T Consensus 176 gL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfI-ca~~e-~l~fY~sd~~ 245 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFI-CAGSE-FLYFYDSDGR 245 (933)
T ss_pred eeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEE-EecCc-eEEEEcCCCc
Confidence 9999988886333333 357999999863323455888899999999998775444 44433 5999998753
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.1e-07 Score=84.31 Aligned_cols=270 Identities=12% Similarity=0.059 Sum_probs=176.2
Q ss_pred EEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC
Q 014472 120 QQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 120 ~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 199 (424)
+...|++.|+.+..... .++.+++.||.++.|.-... ....-+..+..|...|.+++.+-++- ++.|.+.
T Consensus 4 ksymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~i-------sGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d 73 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRI-------SGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVED 73 (558)
T ss_pred hhhcccceeeeEeeehh--heEEeeecchhhhhcCCCCc-------cceeehhhhHHHHHHHHhhhccccce-eEeeccC
Confidence 34678888988876653 48999999999999986541 01222344567888899999988776 6888777
Q ss_pred -CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCC--cEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 200 -DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE--YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 200 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
|..++++|+..-....-++ +..-.+.+..+. ++... .+-++.-.+|.+.++|-+...+ .....-.-|..+|
T Consensus 74 ~Dhs~KvfDvEn~DminmiK----L~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV 147 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIK----LVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPV 147 (558)
T ss_pred cccceeEEEeeccchhhhcc----cccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCce
Confidence 9999999997653321111 111222232221 22211 2333445789999999887664 2344446799999
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCC-CCc-------------ceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKI-STA-------------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~-------------~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
.++.+++.+. .+++....|.|.-|..... ..| +..+...+...+++.|+|++. .+.+-+.|..|
T Consensus 148 ~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkV 225 (558)
T KOG0882|consen 148 KKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKV 225 (558)
T ss_pred EEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEE
Confidence 9999999998 5888888899999987631 111 111222356788999999997 58888899999
Q ss_pred EEeeCCCCCcccCCCccC-------CCCCeeeE-----------EEcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 343 MVWDLSRIDEEQTPEDAE-------DGPPELLF-----------IHGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~-------~~~~~~~~-----------~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
+++++.++...+..+... ..+..+.. .+..|.. .-+.+.|...+.+ |+-+.-=| |+|.+
T Consensus 226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~f-lly~t~~g-ikvin 303 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNF-LLYGTILG-IKVIN 303 (558)
T ss_pred EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCE-EEeeccee-EEEEE
Confidence 999999987655443221 01111110 0111222 3356788889995 55555544 89999
Q ss_pred cCCCCC
Q 014472 404 MAENIY 409 (424)
Q Consensus 404 ~~~~~~ 409 (424)
+.++.+
T Consensus 304 ~~tn~v 309 (558)
T KOG0882|consen 304 LDTNTV 309 (558)
T ss_pred eecCeE
Confidence 988754
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.81 E-value=3.2e-07 Score=88.37 Aligned_cols=188 Identities=17% Similarity=0.231 Sum_probs=133.4
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
+..++.|+-...+..+|+++.... +......+.|.-++.+ ++ ++.+|...|+|.+-|.++.+ .++++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~------r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~~---~iht~~ 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKET------RTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSFE---TIHTFD 214 (1118)
T ss_pred Ccceeecchhhheeeeecccceee------eeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcCc---eeeeee
Confidence 335788888888889999876432 2222223346666543 44 44589999999999999855 589999
Q ss_pred ccCCCeeEEEecCCCCeEEEEEeC---------CCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe
Q 014472 271 AHQSEVNCLAFNPFNEWILATGST---------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRR 341 (424)
Q Consensus 271 ~~~~~v~~i~~~~~~~~~l~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~ 341 (424)
+|.+.|..+... |+ +|+++|. |..|+|||+|+. +.+.-+.-+.++ .-+.|+|.-...++.++..|.
T Consensus 215 aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 215 AHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccc
Confidence 999999888775 65 6777664 557899999984 334444443333 568889987778999999999
Q ss_pred EEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 342 LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
..+-|...... |+.-++........+..+++++++. .++.|..+|.|.+|.-..
T Consensus 290 ~q~vd~~~lsN----------P~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 290 FQFVDTATLSN----------PPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eeeccccccCC----------CccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCCC
Confidence 99999544322 1122233333345599999999999 799999999999998443
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=7e-08 Score=90.32 Aligned_cols=164 Identities=14% Similarity=0.165 Sum_probs=117.5
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC---------CcccceeeeecCCcceeeEEeeCCCCcEEEEEeC
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN---------KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD 248 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~ 248 (424)
.....+++|+.... ++++|+.||.+++..+.+.... ..+..-+.+.+|...|.-+.|+...+.+ -+...
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL-TtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL-TTSDT 91 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc-cccCC
Confidence 34567999998655 8999999999999988765432 2223345678999999999999887654 57788
Q ss_pred CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCC
Q 014472 249 DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 328 (424)
+|.|.+|-+-.++-.... .-...++-|.+++|+.+|.. ++..-.||.|.+=.+.. ..+.-..........+.|+++
T Consensus 92 ~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdG--NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDG--NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeecc--ceecchhcchheccceeeccc
Confidence 999999998776531111 11234667999999999985 88888899888877653 222222222334557889999
Q ss_pred CCcEEEEEeCCCeEEEeeCC
Q 014472 329 NETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~ 348 (424)
.+. ++.+-..|.+.++|..
T Consensus 168 ~~~-~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 168 LEQ-ALFKKANGETHLYDNQ 186 (1189)
T ss_pred HHH-HHhhhcCCcEEEeccc
Confidence 874 5556667888888865
No 301
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.78 E-value=1.6e-06 Score=78.37 Aligned_cols=243 Identities=16% Similarity=0.219 Sum_probs=154.2
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC---
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA--- 201 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--- 201 (424)
.-++..++|+|.|. +|++... ..|.+|.... ...+..+. | ..|..+.|+|.+. +|.+=+..+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~----------~~~l~~~~-~-~~V~~~~fSP~~k-YL~tw~~~pi~~ 96 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPS----------KAKLVRFR-H-PDVKYLDFSPNEK-YLVTWSREPIIE 96 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccc----------hhheeeee-c-CCceecccCcccc-eeeeeccCCccC
Confidence 45788899999997 6666444 4599999776 22233333 3 4589999999887 788754433
Q ss_pred ------------cEEEEeCCCCCCCCcccceeeeecCCcc--ee-eEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-CCC
Q 014472 202 ------------QICLWDINAAPKNKSLEAMQIFKVHEGV--VE-DVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKP 265 (424)
Q Consensus 202 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~ 265 (424)
.+.+||+.++... ..+.....+ .+ -+.|+-++.+..-. ....++|+++ ++.. ..+
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv------~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIV------FSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred hhhccCCccccCceeEEeccCceeE------eeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCc
Confidence 4999999887543 223333333 44 67888877643222 3457999997 3332 222
Q ss_pred eeEecccCCCeeEEEecCCCCe-EEEE-----EeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC-
Q 014472 266 VQSVVAHQSEVNCLAFNPFNEW-ILAT-----GSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL- 338 (424)
Q Consensus 266 ~~~~~~~~~~v~~i~~~~~~~~-~l~~-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~- 338 (424)
...+. ...|...+|+|.+++ .||. ++..+.+++|.+.. ..++.+...-...-..+.|.+.|..+|+-.-.
T Consensus 168 ~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 168 FKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred hhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 32222 367888899997432 2333 45678899999985 45554444334445678999999765543321
Q ss_pred ---------CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEE-EEEeCCCcEEEEecCCCC
Q 014472 339 ---------GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVI-SSVAEDNILQIWQMAENI 408 (424)
Q Consensus 339 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~ 408 (424)
...+.|+++.... +....+-.++|.+++|.|.++.+. ++|-.+..+.++++..+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~---------------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl 309 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERS---------------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL 309 (561)
T ss_pred eecccceeccceEEEEeecccc---------------cceeccccccceeeeecccCCceeEEecccccceeecccccce
Confidence 2346677776321 122224467899999999887533 344578889999998874
Q ss_pred C
Q 014472 409 Y 409 (424)
Q Consensus 409 ~ 409 (424)
.
T Consensus 310 ~ 310 (561)
T COG5354 310 R 310 (561)
T ss_pred E
Confidence 3
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.77 E-value=2.9e-07 Score=88.59 Aligned_cols=182 Identities=16% Similarity=0.237 Sum_probs=130.9
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
..++.|+-...+..+|+.+ .+......-....|.-++.+ +. ++.+|...|+|.+-|.++. +
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~----------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD~~s~------~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNT----------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRDPNSF------E 208 (1118)
T ss_pred cceeecchhhheeeeeccc----------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeecCCcC------c
Confidence 3456666667777788877 22222222223345555543 34 7999999999999999765 5
Q ss_pred ceeeeecCCcceeeEEeeCCCCcEEEEEeC---------CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEE
Q 014472 219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGD---------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWIL 289 (424)
Q Consensus 219 ~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 289 (424)
.+..+..|++.|.++... |+ +++++|. |..|+|||+|..+...|+.. +. ...-+.|+|.-...+
T Consensus 209 ~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~-~P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 209 TIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PY-GPQFLRFHPSLTTRL 281 (1118)
T ss_pred eeeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCccc---cc-CchhhhhcccccceE
Confidence 678888999999988765 54 5556653 66789999999776666653 22 236678888777779
Q ss_pred EEEeCCCcEEEEECCCCCCc---ceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeC
Q 014472 290 ATGSTDKTVKLFDLRKISTA---LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDL 347 (424)
Q Consensus 290 ~~g~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~ 347 (424)
++.+..|...+-|......+ +..+......+..+.++++++ .+|.|..+|.|.+|--
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 99999999999994443333 444555566799999999996 8999999999999973
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=6.2e-07 Score=85.33 Aligned_cols=187 Identities=15% Similarity=0.206 Sum_probs=127.2
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
....+.|++++. .++|-|+.+|.|++++... .+ .+...|... ...|. +++||+.||.|
T Consensus 38 ~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-----------~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv 95 (846)
T KOG2066|consen 38 QNDAISCCAVHD---KFFALGTHRGAVYLTTCQG-----------NP-KTNFDHSSS------ILEGE-YVASCSDDGKV 95 (846)
T ss_pred hhhHHHHHHhhc---ceeeeccccceEEEEecCC-----------cc-ccccccccc------ccCCc-eEEEecCCCcE
Confidence 457788888874 4899999999999999876 22 233335443 34466 89999999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC----CCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
.|-.+.+...... + ....++.+|+++|+ ....|++||.-| +.++.-+=-....++ .+..-.++|.++
T Consensus 96 ~I~sl~~~~~~~~------~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i 166 (846)
T KOG2066|consen 96 VIGSLFTDDEITQ------Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSI 166 (846)
T ss_pred EEeeccCCcccee------E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEE
Confidence 9998877643211 1 24568999999997 223566898888 777754422222222 345567899999
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCC------CEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE------EVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.|. |. ++|=++.+| |+|||+.. ++.+..+..... .-..+.|.+... |+.|= ..+|+|..++.
T Consensus 167 ~W~--g~-lIAWand~G-v~vyd~~~-~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 167 KWR--GN-LIAWANDDG-VKVYDTPT-RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGW-GDSVKICSIKK 234 (846)
T ss_pred Eec--Cc-EEEEecCCC-cEEEeccc-cceeeccCCCCCCCCcccCCCceEecCCCe--EEEec-CCeEEEEEEec
Confidence 997 54 788887776 89999987 444444443222 235678887763 55544 44699998883
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.1e-07 Score=82.64 Aligned_cols=227 Identities=16% Similarity=0.146 Sum_probs=150.2
Q ss_pred CCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC-CCeEEEE
Q 014472 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD-DQYLLIW 255 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~-dg~i~i~ 255 (424)
|...|+.+.-.. ..++.+++.||.++.|--..- .-...+.-+..|-+.|.+++.+-++ .++++++. |..++++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~i---sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRI---SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCc---cceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEE
Confidence 677777666443 348999999999999976431 1123344466788889999988887 47788777 9999999
Q ss_pred ECCCCCCCCCeeEecccCCCeeEEEecCC-CCeEEEEE-eCCCcEEEEECCCCC-CcceeecCCCCCEEEEEEcCCCCcE
Q 014472 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPF-NEWILATG-STDKTVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~g-~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ 332 (424)
|+.+-.... ...+...++.+..+. ++. --.++|++ -.+|.+.++|-+... +....-..|..+|..+.++|-+. .
T Consensus 82 DvEn~Dmin-miKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s 158 (558)
T KOG0882|consen 82 DVENFDMIN-MIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-S 158 (558)
T ss_pred Eeeccchhh-hcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-c
Confidence 998754311 111112222232222 221 11134443 357899999988755 34455567999999999999997 5
Q ss_pred EEEEeCCCeEEEeeCCCCCcccCCCccCCCCC---eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPP---ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+++....|.|.-|.... ..+.+........ .-++.+........++.|+|++. .+.+-+.|..|+++.+.++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCC--cccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccEEEEEEeccchh
Confidence 77888889999998873 1111111111111 11222233356688999999999 689999999999999999987
Q ss_pred CCCCCC
Q 014472 410 HDEDDL 415 (424)
Q Consensus 410 ~~~~~~ 415 (424)
..+-++
T Consensus 236 vqeiDE 241 (558)
T KOG0882|consen 236 VQEIDE 241 (558)
T ss_pred hhhhhc
Confidence 655443
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.72 E-value=4.8e-09 Score=96.79 Aligned_cols=212 Identities=14% Similarity=0.224 Sum_probs=137.3
Q ss_pred CCeeeEEecCCCC-ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe----CCCeEE
Q 014472 179 TEGYGLSWSKFKE-GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG----DDQYLL 253 (424)
Q Consensus 179 ~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~----~dg~i~ 253 (424)
..+.|++++-+.. .++++|..+|.|.+-.++..... .-....+|...+++++|++-+...+|+|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3466777665433 47889999999999988765322 12234467889999999998777776663 467799
Q ss_pred EEECCCCCC-CCCeeEec-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCc
Q 014472 254 IWDLRTPSV-SKPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 254 i~d~~~~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 331 (424)
|||+.+.-. .+.-..+. +......+++|..+.+ ++.+|...+.++++|+|........ ..+..+..+...|-...
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPN 209 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCC
Confidence 999987521 11111122 2345677999997665 7889999999999999952222222 23456777888885555
Q ss_pred EEEEEeCCCeEEEee-CCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEe-CCCcEEEEecCCC
Q 014472 332 ILASCCLGRRLMVWD-LSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVA-EDNILQIWQMAEN 407 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~ 407 (424)
++++.. ||.|.+|| .++...... ..+..-......+..++|+|..+.++++.. ..++|+++++...
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~---------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQ---------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHH---------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 676555 99999999 443321100 000000111124888999998877777766 4568889988653
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=3.7e-05 Score=66.99 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=143.1
Q ss_pred CceeEEEecCCCCcEEEEEecCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEE-----eC
Q 014472 126 GEVNRARYMPQNPFLIATKTVSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSG-----SD 199 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-----~~ 199 (424)
.....++.+|.....+|.+-.-| ...+||..+...... ....+-..+.+| -.|+++|. +|++. ..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~--~~a~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g 75 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR--LWAPPGRHFYGH------GVFSPDGR-LLYTTENDYETG 75 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE--EcCCCCCEEecC------EEEcCCCC-EEEEeccccCCC
Confidence 44556888887776788877766 456788876221110 011223345555 57999998 56664 33
Q ss_pred CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-----------------CCCeEEEEECCCCCC
Q 014472 200 DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLRTPSV 262 (424)
Q Consensus 200 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-----------------~dg~i~i~d~~~~~~ 262 (424)
.|.|-|||... .+..+..+..|.-....+.+.|+++.|+++-+ .+..+.+.|.++++.
T Consensus 76 ~G~IgVyd~~~-----~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l 150 (305)
T PF07433_consen 76 RGVIGVYDAAR-----GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL 150 (305)
T ss_pred cEEEEEEECcC-----CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence 58899999972 23456667777777889999999977764422 233455566666653
Q ss_pred CCCeeEe--cccCCCeeEEEecCCCCeEEEEEeCCC-------cEEEEECCCCCCcceeec-------CCCCCEEEEEEc
Q 014472 263 SKPVQSV--VAHQSEVNCLAFNPFNEWILATGSTDK-------TVKLFDLRKISTALHTFD-------SHKEEVFQVGWN 326 (424)
Q Consensus 263 ~~~~~~~--~~~~~~v~~i~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~s 326 (424)
... ..+ .-|...|..++++++|. +++..-..| .|.+++... .+..+. .-.+.+-+|+++
T Consensus 151 l~q-~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 151 LEQ-VELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred eee-eecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEe
Confidence 211 123 33677899999999886 333333332 233443322 222222 234679999999
Q ss_pred CCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeC
Q 014472 327 PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAE 395 (424)
Q Consensus 327 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 395 (424)
+++..+.+|+=..+.+.+||..++. ++.... -..+..++-.+++ +++|.+.
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~tg~--------------~~~~~~--l~D~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAATGR--------------LLGSVP--LPDACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCC--------------Eeeccc--cCceeeeeecCCc--eEEeCCC
Confidence 9998666777778999999998863 222221 1235666666665 5666554
No 307
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.71 E-value=7.8e-06 Score=74.06 Aligned_cols=206 Identities=14% Similarity=0.202 Sum_probs=126.5
Q ss_pred EeccCCceeEEEecCCCCcEEEEEecCC---------------eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCC--ee-
Q 014472 121 QINHDGEVNRARYMPQNPFLIATKTVSA---------------EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GY- 182 (424)
Q Consensus 121 ~~~h~~~v~~i~~~p~~~~~latg~~dg---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~- 182 (424)
++.|+ .|.-+.|+|.+. +|.+-+..+ .+.+||+.+ ...+..+..-..+ .+
T Consensus 68 ~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----------g~iv~sf~~~~q~~~~Wp 135 (561)
T COG5354 68 RFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----------GMIVFSFNGISQPYLGWP 135 (561)
T ss_pred eeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCceeEEeccC----------ceeEeeccccCCcccccc
Confidence 44444 567788888775 777765433 489999887 3334444443333 44
Q ss_pred eEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCc-EEEE-----EeCCCeEEEEE
Q 014472 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEY-LFGS-----VGDDQYLLIWD 256 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~~s-----~~~dg~i~i~d 256 (424)
-+.|+-++. ++|-- ....+.|+++ +.... ..+...+. ...|....|+|.+++ .||. .+..+++++|.
T Consensus 136 ~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~--~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 136 VLKFSIDDK-YVARV-VGSSLYIHEI-TDNIE--EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeeeecch-hhhhh-ccCeEEEEec-CCccc--cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 678887665 44433 3357999997 32211 01111121 357888899987432 2332 35678899999
Q ss_pred CCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeC----------CCcEEEEECCCCCCcceeecCCCCCEEEEEEc
Q 014472 257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST----------DKTVKLFDLRKISTALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 326 (424)
+..... +.+..-....-..+.|++.|.++++-.-. ...++|++++. ..+.....-.++|...+|.
T Consensus 209 Ip~~s~---l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 209 IPKNSV---LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWE 283 (561)
T ss_pred ccCCCe---eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeec
Confidence 985443 33322233445678899999876554321 24688888885 3333332557899999999
Q ss_pred CCCCcEEEE-EeCCCeEEEeeCCCC
Q 014472 327 PKNETILAS-CCLGRRLMVWDLSRI 350 (424)
Q Consensus 327 p~~~~~l~s-~~~dg~i~iwd~~~~ 350 (424)
|.+..+.+. |-.+-.+.++|++..
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccCCceeEEecccccceeecccccc
Confidence 988754333 346778999998763
No 308
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.65 E-value=1.8e-05 Score=71.30 Aligned_cols=203 Identities=10% Similarity=0.109 Sum_probs=115.1
Q ss_pred EEEecCCCCcEEEEEec-CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeC
Q 014472 130 RARYMPQNPFLIATKTV-SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDI 208 (424)
Q Consensus 130 ~i~~~p~~~~~latg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 208 (424)
.++++|+|+.++++--. +..|.+.|+.. .+....+.- .+...-...+. .. +.+-+.||......+
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~----------~kvv~ei~v-p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEG----------KAFVRMMDV-PDCYHIFPTAN-DT--FFMHCRDGSLAKVGY 174 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCC----------CcEEEEEeC-CCCcEEEEecC-Cc--cEEEeecCceEEEEe
Confidence 78999999855554424 78999999987 333333332 11111122221 11 223345555555444
Q ss_pred CCCCCCCcccceeeeecCCcceee-EEeeC-CCCcEEEEEeCCCeEEEEECCCCCC--CCCeeEecc-------cCCCee
Q 014472 209 NAAPKNKSLEAMQIFKVHEGVVED-VAWHL-RHEYLFGSVGDDQYLLIWDLRTPSV--SKPVQSVVA-------HQSEVN 277 (424)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~v~~-i~~~~-~~~~~~~s~~~dg~i~i~d~~~~~~--~~~~~~~~~-------~~~~v~ 277 (424)
....... ......+..-..++.. =.|.+ ++..++++ ..|.|.+.|+..... ..++..+.. ......
T Consensus 175 d~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 175 GTKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred cCCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 4332211 1111111110000000 03455 77766644 339999999755331 112222111 233445
Q ss_pred EEEecCCCCeEEEEEe---------CCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEeeC
Q 014472 278 CLAFNPFNEWILATGS---------TDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNE-TILASCCLGRRLMVWDL 347 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~s~~~dg~i~iwd~ 347 (424)
-++++|+++++++... ..+.|.++|..+ .+.+..+.. ...+..++++|+++ .++++...++.|.++|.
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 5999999997665442 124799999998 677777665 56899999999998 54545557888999999
Q ss_pred CCCC
Q 014472 348 SRID 351 (424)
Q Consensus 348 ~~~~ 351 (424)
.+++
T Consensus 330 ~t~k 333 (352)
T TIGR02658 330 ETGK 333 (352)
T ss_pred cCCe
Confidence 8864
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=1.3e-07 Score=56.10 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=35.2
Q ss_pred eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
+++..+.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788899999999999999998 799999999999997
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=8.5e-06 Score=78.42 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=125.3
Q ss_pred EecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcc-eeeEEeeCCCCcEEEEEeCCC-----eEEEEECC
Q 014472 185 SWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHLRHEYLFGSVGDDQ-----YLLIWDLR 258 (424)
Q Consensus 185 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~s~~~dg-----~i~i~d~~ 258 (424)
+|++.+. .++.|+.+|.|.+.+-. ++.+..++.+... |..+ +.-++..++++.+.|+ .|+|||+.
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEeccc-------ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEeccc
Confidence 3455454 79999999999888743 2334556666666 4444 3444444555666554 59999997
Q ss_pred CCCCCC-C--e--eEec-----ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC---CCCCCcceeecCCCCCEEEEEE
Q 014472 259 TPSVSK-P--V--QSVV-----AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDL---RKISTALHTFDSHKEEVFQVGW 325 (424)
Q Consensus 259 ~~~~~~-~--~--~~~~-----~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~---~~~~~~~~~~~~~~~~v~~~~~ 325 (424)
...... | + ..+. ....++.+++.+.+-. .+|+|-.+|.|..+.= |..+....-....+.+|+.+++
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 642222 1 2 1111 2356789999998866 7999999999998842 2212222222334679999999
Q ss_pred cCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 326 NPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
..++...+.++... .|.+|.+.... ..+..+..|...+++..+++.... +++++ +..|.+|+..
T Consensus 180 ~~d~~s~lFv~Tt~-~V~~y~l~gr~-------------p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 180 RSDGKSVLFVATTE-QVMLYSLSGRT-------------PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSD 243 (933)
T ss_pred ecCCceeEEEEecc-eeEEEEecCCC-------------cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCC
Confidence 99887644444433 59999997421 224446677778888888876663 44444 4568888887
Q ss_pred CC
Q 014472 406 EN 407 (424)
Q Consensus 406 ~~ 407 (424)
..
T Consensus 244 ~~ 245 (933)
T KOG2114|consen 244 GR 245 (933)
T ss_pred Cc
Confidence 54
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.5e-07 Score=55.81 Aligned_cols=38 Identities=29% Similarity=0.661 Sum_probs=34.9
Q ss_pred CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEee
Q 014472 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWD 346 (424)
Q Consensus 308 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd 346 (424)
+++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 46788999999999999999985 899999999999997
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=4.7e-06 Score=77.28 Aligned_cols=132 Identities=18% Similarity=0.327 Sum_probs=94.7
Q ss_pred CCCCcEEEEEEeccCCceeEEEecCCCCcEEEEE----ecCCe----EEEEeCCCCCCCCCCCCCCCCc-EEEecCCCCe
Q 014472 111 CANGKVQIIQQINHDGEVNRARYMPQNPFLIATK----TVSAE----VYVFDYSKHPSKPPLDGACSPD-LRLRGHSTEG 181 (424)
Q Consensus 111 ~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg----~~dg~----v~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v 181 (424)
...++++++..+.-.....++.|+-..++.+.|- +.+|. -.+|++.. ...+.. .+-......|
T Consensus 191 ~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r--------~klqrvsvtsipL~s~v 262 (545)
T PF11768_consen 191 CSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR--------NKLQRVSVTSIPLPSQV 262 (545)
T ss_pred ecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec--------CceeEEEEEEEecCCcc
Confidence 3455888888888888889999998665555543 22443 34566654 111111 1222477889
Q ss_pred eeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC
Q 014472 182 YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 182 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
.+++++|+.. .|+.|+.||+|.+||...+. .......-.++.++|+|+|. +|++|+..|.+.+||+.-.
T Consensus 263 ~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~--------t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 263 ICCARSPSED-KLVLGCEDGSIILYDTTRGV--------TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eEEecCcccc-eEEEEecCCeEEEEEcCCCe--------eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 9999999887 69999999999999987652 12223455688999999996 6779999999999998643
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.53 E-value=0.00037 Score=65.07 Aligned_cols=175 Identities=18% Similarity=0.275 Sum_probs=107.2
Q ss_pred ceeeEEeeCCCCcEEEEE----eCCCe----EEEEECCCCCCCCCee-EecccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014472 229 VVEDVAWHLRHEYLFGSV----GDDQY----LLIWDLRTPSVSKPVQ-SVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~----~~dg~----i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
...++.|+-..++.+.+. +.+|. -++|++...+. +.+. +--..++.|.|.+++|+.. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 345677776555554443 23343 34677665442 2222 1234678999999999888 588999999999
Q ss_pred EEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEE---cCCCCC
Q 014472 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH---GGHTSK 376 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~ 376 (424)
+||.+. + +.......-..+.++|+|+|. ++++|+..|.+.+||+.-......... ++..+.....+ -.+...
T Consensus 285 LyD~~~-~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls-Ed~~P~~~L~Ls~yf~~~~~ 359 (545)
T PF11768_consen 285 LYDTTR-G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS-EDATPKSTLQLSKYFRVSSS 359 (545)
T ss_pred EEEcCC-C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeecc-ccCCCccEEeeehhccCcch
Confidence 999876 2 222333456778999999995 899999999999999976543222211 12222222222 234556
Q ss_pred cceEEeCCCCC------------cEEEEEeCCCcEEEEecCCCCCC
Q 014472 377 ISDFSWNPCED------------WVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 377 v~~~~~~~~~~------------~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+..+.|.+... .+++-.=+.|-+-+-.+..|...
T Consensus 360 L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~G~~~ 405 (545)
T PF11768_consen 360 LVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKLGVFT 405 (545)
T ss_pred hheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEeecccc
Confidence 77888884321 13333344555666665555443
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.2e-07 Score=90.99 Aligned_cols=197 Identities=18% Similarity=0.249 Sum_probs=131.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCC-
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDA- 201 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg- 201 (424)
.|...-+|++|+-... .|++|+-.|.|++|++.+ ........+|...|+-+.=+.+|..+|.+++...
T Consensus 1099 d~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~s----------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSS----------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccccceeeEEeecCCc-eEEeeeccceEEEEEccC----------ccccccccccccccccccccCCcceeeeeccccCc
Confidence 3778899999998664 899999999999999988 3445567889999999999998885555554444
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-EecccCCCeeEEE
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ-SVVAHQSEVNCLA 280 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~v~~i~ 280 (424)
...+|++.... .+...+ ..-.++.|+......+ .|.......+||+.+........ ...+..-.-++..
T Consensus 1168 lsaLW~~~s~~-----~~~Hsf----~ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1168 LSALWDASSTG-----GPRHSF----DEDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred hHHHhcccccc-----Cccccc----cccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 57899986421 222222 2345778876544333 44555678899999876422111 1111222337889
Q ss_pred ecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 281 FNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
|+|... +++ .|| .+||+|. ...++.|...+. -..-.|+|+|..++ .. --|||+++.+...
T Consensus 1238 FsP~D~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~-~~~G~FHP~g~eVI-IN-----SEIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1238 FSPCDT-LIL---NDG--VLWDVRI-PEAIHRFDQFTD-YGGGGFHPSGNEVI-IN-----SEIWDMRTFKLLH 1297 (1516)
T ss_pred cCCCcc-eEe---eCc--eeeeecc-HHHHhhhhhhee-cccccccCCCceEE-ee-----chhhhhHHHHHHh
Confidence 999887 443 455 4899998 477777765442 23446999996544 32 3589999876443
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=0.00011 Score=64.08 Aligned_cols=187 Identities=11% Similarity=0.109 Sum_probs=118.2
Q ss_pred eeEEEec-CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CCCCeeeEEecCCCCceEEEEeCC---
Q 014472 128 VNRARYM-PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HSTEGYGLSWSKFKEGHLLSGSDD--- 200 (424)
Q Consensus 128 v~~i~~~-p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~d--- 200 (424)
...+++. +++. ++++ .. +.+.++|..+ +.......... .....+.+++.++|. +.++....
T Consensus 42 ~~G~~~~~~~g~-l~v~-~~-~~~~~~d~~~--------g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~ 109 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVA-DS-GGIAVVDPDT--------GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGA 109 (246)
T ss_dssp EEEEEEECTTSE-EEEE-ET-TCEEEEETTT--------TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCT
T ss_pred CceEEEEccCCE-EEEE-Ec-CceEEEecCC--------CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcc
Confidence 6777777 5543 4444 44 4456668776 22333333321 234578999999887 56655433
Q ss_pred -----CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC-CCCeeEe---cc
Q 014472 201 -----AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSV---VA 271 (424)
Q Consensus 201 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~---~~ 271 (424)
|.|..++.. +. .......-...+.|+|+|+++.++++-+..+.|..+++..... ......+ ..
T Consensus 110 ~~~~~g~v~~~~~~-~~-------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 181 (246)
T PF08450_consen 110 SGIDPGSVYRIDPD-GK-------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG 181 (246)
T ss_dssp TCGGSEEEEEEETT-SE-------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred ccccccceEEECCC-Ce-------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence 456666665 21 1222223456789999999998888888899999999975432 1111122 22
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEc-CCCCcEEEEEe
Q 014472 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN-PKNETILASCC 337 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~l~s~~ 337 (424)
..+..-.++++.+|. +.++....+.|.++|.+ ++.+..+......+++++|. ++...+++|.+
T Consensus 182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~--G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD--GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSCEEEEEEEBTTS--EEEEEETTTEEEEEETT--SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC--ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 222477899999886 67776778999999987 56777777665699999994 66666666653
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=4.3e-05 Score=66.56 Aligned_cols=215 Identities=10% Similarity=0.100 Sum_probs=132.3
Q ss_pred eeeEEecCCCCceEEEEeCCCc-EEEEeCCCCCCCCcccc--eeeeecCCcceeeEEeeCCCCcEEEEE----eCCCeEE
Q 014472 181 GYGLSWSKFKEGHLLSGSDDAQ-ICLWDINAAPKNKSLEA--MQIFKVHEGVVEDVAWHLRHEYLFGSV----GDDQYLL 253 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~s~----~~dg~i~ 253 (424)
..+++.+|.....++.+-.-|+ ..+||..++.....+.. -..|.+ .-.|+++|+.++++- ...|.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyG------Hg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYG------HGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEec------CEEEcCCCCEEEEeccccCCCcEEEE
Confidence 3467788866656666666665 67889988754322211 112233 357999999887653 3468899
Q ss_pred EEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe-----------------CCCcEEEEECCCCCCccee--e-
Q 014472 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS-----------------TDKTVKLFDLRKISTALHT--F- 313 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~--~- 313 (424)
|||.+.. ...+..+..|.-....+.+.|+++.|++.-+ .+.++.+.|.++ +..+.. +
T Consensus 81 Vyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp 157 (305)
T PF07433_consen 81 VYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELP 157 (305)
T ss_pred EEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecC
Confidence 9999832 3456777777777888999999975443321 123455566665 555544 3
Q ss_pred -cCCCCCEEEEEEcCCCCcEEEEEeCCCe-------EEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCC
Q 014472 314 -DSHKEEVFQVGWNPKNETILASCCLGRR-------LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPC 385 (424)
Q Consensus 314 -~~~~~~v~~~~~sp~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 385 (424)
..|..+|.-+++.++|. +++..-..|. |-+++.... .+.. ..+.... ..-.+.+-+|+++++
T Consensus 158 ~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~----~~p~~~~---~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGA--LRLL----PAPEEQW---RRLNGYIGSIAADRD 227 (305)
T ss_pred ccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCc--ceec----cCChHHH---HhhCCceEEEEEeCC
Confidence 33777899999999884 4444333321 222322210 0000 0000111 122456889999999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q 014472 386 EDWVISSVAEDNILQIWQMAENIYHDEDD 414 (424)
Q Consensus 386 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 414 (424)
+..+.+|+=..|++.+||..++.+.....
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence 99666777789999999999997765443
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00013 Score=73.35 Aligned_cols=206 Identities=15% Similarity=0.236 Sum_probs=123.9
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICL 205 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 205 (424)
+.|.++.|..+.. -++.+...|.|.+-|..+ ........-...|.+++|+|++. .++..+..+++.+
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et-----------~~~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPET-----------LELEIVGNVDNGISAASWSPDEE-LLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccc-----------cceeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEE
Confidence 5788889988765 466667889999987766 22233334567899999999988 6877777777766
Q ss_pred EeCC----CCCCC--------Ccc-----cceeeeec---------------------CCcceeeEEeeCCCCcEEEEE-
Q 014472 206 WDIN----AAPKN--------KSL-----EAMQIFKV---------------------HEGVVEDVAWHLRHEYLFGSV- 246 (424)
Q Consensus 206 wd~~----~~~~~--------~~~-----~~~~~~~~---------------------~~~~v~~i~~~~~~~~~~~s~- 246 (424)
-+-. ..+.. ... +....+.+ ..+.=+.|.|--+|. +||+.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~ 214 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSF 214 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEE
Confidence 4321 10000 000 00001111 011223589998887 44442
Q ss_pred ---eCC-CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe---CCCcEEEEECCCCC--CcceeecCCC
Q 014472 247 ---GDD-QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS---TDKTVKLFDLRKIS--TALHTFDSHK 317 (424)
Q Consensus 247 ---~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~---~dg~i~iwd~~~~~--~~~~~~~~~~ 317 (424)
..+ ..|+|||.. +.. .... .....--.+++|-|.|. ++|+-. .|+.|.+|.-+... .....+....
T Consensus 215 ~~~~~~~RkirV~drE-g~L-ns~s--e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GAL-NSTS--EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-chh-hccc--CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 233 789999987 221 1111 11233446899999887 566543 35579998755322 2222233334
Q ss_pred CCEEEEEEcCCCCcEEEE---EeCCCeEEEeeCCCCC
Q 014472 318 EEVFQVGWNPKNETILAS---CCLGRRLMVWDLSRID 351 (424)
Q Consensus 318 ~~v~~~~~sp~~~~~l~s---~~~dg~i~iwd~~~~~ 351 (424)
..|..++|+.++. +||+ ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCC-ceeeeecccccceEEEEEecCeE
Confidence 4599999999986 7776 4455569999988753
No 318
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00034 Score=60.11 Aligned_cols=205 Identities=12% Similarity=0.177 Sum_probs=113.9
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC-CCCeeeEEecCCCCceEEEEeCCCc
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH-STEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
-...+..|+|+|+...++|+....+.|..++... ..+..+.-. -+..-+|++..++. ++++.-.++.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-----------~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~ 87 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-----------KVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR 87 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-----------CEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence 3456999999998878999999999998888653 223333222 34577888876553 4444445899
Q ss_pred EEEEeCCCCCCCCcccceeee-----ecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC--CCCCCCeeEe------
Q 014472 203 ICLWDINAAPKNKSLEAMQIF-----KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT--PSVSKPVQSV------ 269 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~--~~~~~~~~~~------ 269 (424)
+.++++..............+ ..+...+..++|++.+..+++ +-...-..+|.++. ..........
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccc
Confidence 999998554322111111111 134567899999999887775 45555566666654 1110011111
Q ss_pred cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCC---------CCEEEEEEcCCCCcEEEEEeCCC
Q 014472 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK---------EEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 270 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
......+.+++++|...++++....+..|..+|.. ++++..+.... ...-.|+|.++|. |...+.-+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYIvsEpN 242 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYIVSEPN 242 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTT
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEEEcCCc
Confidence 12345688999999988888888889999999944 56655554322 3577899999985 44445555
Q ss_pred eEEEe
Q 014472 341 RLMVW 345 (424)
Q Consensus 341 ~i~iw 345 (424)
...+|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.39 E-value=6.2e-05 Score=70.29 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=103.7
Q ss_pred EEecCCCCeeeEEecCCCCceEEEEeCC---CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDD---AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
.+..-...+..-+|+|++..+....-.. ..+.+++++++...... .+ .+.-..-+|+|+|+.++.+...|
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~----~~---~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL----NF---NGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee----cc---CCccCCccCCCCCCEEEEEECCC
Confidence 3443445567778999888644333222 35999999887553222 22 33344568999999998888888
Q ss_pred Ce--EEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 250 QY--LLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 250 g~--i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
|. |.++|+..... ..+....+.-..-.|+|+|++++++.+..|.-.||-....+.....+......-..-.|+|
T Consensus 260 g~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 260 GSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCccEEEEcCCCCcc----eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCC
Confidence 87 55667776552 2232223333466899999998888888886555544433333344443333334788999
Q ss_pred CCCcEEEEEeCCCe--EEEeeCCCC
Q 014472 328 KNETILASCCLGRR--LMVWDLSRI 350 (424)
Q Consensus 328 ~~~~~l~s~~~dg~--i~iwd~~~~ 350 (424)
+|+.+++....+|. |.+.++..+
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCC
Confidence 99866655544555 555555543
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=9.7e-06 Score=76.44 Aligned_cols=209 Identities=14% Similarity=0.203 Sum_probs=123.1
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
|+..|.--++...+. +++.|+..|.+++|+.... ... .....+..+.+..+..+++.. ++|.|+..|.|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~--------~~~-~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V 100 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTG--------EMR-KLKNEGATGITCVRSVSSVEY-LVAAGTASGRV 100 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCch--------hhh-cccccCccceEEEEEecchhH-hhhhhcCCceE
Confidence 444444445555555 8999999999999998762 111 112222344556667777665 78889999999
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC-CCCCCCeeEecccCCCeeEEEec
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
.++-++.............-..|...|++++|++++..++ +|...|+|.+-.+.. .....+.+.+..-.+.|-.+...
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9999887543322211111234788999999999998766 999999999988876 22222333344456677777765
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCCC--CEEEEEEcCC---CCcEEEEEeCCCeEEEeeCCCCC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKE--EVFQVGWNPK---NETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~--~v~~~~~sp~---~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
. .++|++.... -.+++... +. +..+- .... .-...+|-|. ++.-++.|+.-| .|+|..+-.+
T Consensus 180 q--~~LLVStl~r--~~Lc~tE~-et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G 247 (726)
T KOG3621|consen 180 Q--SYLLVSTLTR--CILCQTEA-ET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAG 247 (726)
T ss_pred c--ceehHhhhhh--hheeecch-hH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecce
Confidence 3 3455444332 23444432 11 11111 1111 1344556553 122344555555 7888876544
No 321
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.39 E-value=0.00013 Score=72.29 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=97.7
Q ss_pred cCCCCceEEEE-eCCCcEEEEeCCCCCCCCcccceeeeecCCcc-eeeEEeeC-----CCCcEEEEEeCCCeEEEEECCC
Q 014472 187 SKFKEGHLLSG-SDDAQICLWDINAAPKNKSLEAMQIFKVHEGV-VEDVAWHL-----RHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 187 ~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
+.....+|+.. .....|+-.|++.++ .+..+..+... |.+++-.. .....| .|-.+..+..||.|-
T Consensus 489 ~~~d~~mil~~~~~~~~ly~mDLe~GK------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~ 561 (794)
T PF08553_consen 489 HDQDRNMILLDPNNPNKLYKMDLERGK------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRL 561 (794)
T ss_pred hccccceEeecCCCCCceEEEecCCCc------EEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCC
Confidence 33344454443 345778888998874 34555555533 55554221 122344 567788899999997
Q ss_pred CCCCCCeeE---ecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEE
Q 014472 260 PSVSKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 260 ~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 336 (424)
... +.+.. ........+|++-..+| .||+|+.+|.||+||-- .......+.+-+.+|..|..+.+|+++||||
T Consensus 562 ~~~-k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 562 SGN-KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC 637 (794)
T ss_pred CCC-ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee
Confidence 541 11210 11245567888888777 49999999999999943 2445556667789999999999999777666
Q ss_pred eCCCeEEEeeCC
Q 014472 337 CLGRRLMVWDLS 348 (424)
Q Consensus 337 ~~dg~i~iwd~~ 348 (424)
+..|.+++..
T Consensus 638 --~tyLlLi~t~ 647 (794)
T PF08553_consen 638 --KTYLLLIDTL 647 (794)
T ss_pred --cceEEEEEEe
Confidence 4568888764
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.23 E-value=0.00064 Score=68.51 Aligned_cols=205 Identities=14% Similarity=0.261 Sum_probs=125.2
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
...|.++.|..+.. -++.+..+|.|.+-|..+.. +.....-...|.+++|+|++. +++..+..+++.+.+-
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~-------~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLE-------LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTK 138 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccc-------eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEec
Confidence 36899999998777 48888889999999876642 222333567899999999987 5566666677766432
Q ss_pred C----CCCC--------CCC--------eeEecc---------------------cCCCeeEEEecCCCCeEEEEEe---
Q 014472 258 R----TPSV--------SKP--------VQSVVA---------------------HQSEVNCLAFNPFNEWILATGS--- 293 (424)
Q Consensus 258 ~----~~~~--------~~~--------~~~~~~---------------------~~~~v~~i~~~~~~~~~l~~g~--- 293 (424)
. ..+. .+. -..+.+ -.+.=++|+|--+|+ ++|+..
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~ 217 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE-YFAVSFVES 217 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc-EEEEEEEec
Confidence 1 0000 000 001110 011224689999998 466622
Q ss_pred -CC-CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEeeCCCCCcccCCCccCCCCCeeeE
Q 014472 294 -TD-KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCC---LGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368 (424)
Q Consensus 294 -~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 368 (424)
.+ +.|+|||-. +..-.+-....+.-.+++|-|.|. ++++-. .|+.|.+|.-+..... ....
T Consensus 218 ~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg-----------~f~l 283 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHG-----------EFVL 283 (1265)
T ss_pred cCCceeEEEeccc--chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCcccc-----------cccc
Confidence 23 799999976 222222222234446899999885 566543 3567888886543211 0011
Q ss_pred EEcCCCCCcceEEeCCCCCcEEEE---EeCCCcEEEEecCCC
Q 014472 369 IHGGHTSKISDFSWNPCEDWVISS---VAEDNILQIWQMAEN 407 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~~~~~~l~s---~~~d~~i~iw~~~~~ 407 (424)
........+..++|+.++. +|+. ......|++|-+..-
T Consensus 284 ~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence 1111223489999999999 6766 445555999988654
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=7e-05 Score=72.24 Aligned_cols=109 Identities=15% Similarity=0.278 Sum_probs=79.5
Q ss_pred eEEEecCCCCcEEEEEe----cCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEE
Q 014472 129 NRARYMPQNPFLIATKT----VSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
+-+.|+|..+ ++|+++ ..|.|.||--... .....+..-| +++++|+|..- +|+.|-.-|.+.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---------Pqr~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFADTGE---------PQRDVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEecCCC---------CCccccccee---hhhhccChHHH-HHhhccccceeE
Confidence 3467999888 787776 3588999864431 1111222223 56799999665 789999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECC
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
+|...+... -.....|..+|..+.|+++|.. +.++..-|.|.+|...
T Consensus 85 v~~~~~~e~------htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 85 VQKTNTTET------HTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCcee------eeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEee
Confidence 999876532 2334569999999999999975 5599999999999776
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00011 Score=70.44 Aligned_cols=190 Identities=12% Similarity=0.143 Sum_probs=125.1
Q ss_pred CCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECC
Q 014472 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
..+++++++ + ..|+-|.-+|.|++++..... .....|+.. .-.|. .+++|+.||+|.|..+-
T Consensus 40 D~is~~av~--~-~~~~~GtH~g~v~~~~~~~~~--------~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--D-KFFALGTHRGAVYLTTCQGNP--------KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--c-ceeeeccccceEEEEecCCcc--------ccccccccc------ccCCc-eEEEecCCCcEEEeecc
Confidence 346666665 3 379999999999999986542 111224333 44566 46799999999999988
Q ss_pred CCCCCCCeeEecccCCCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcce-eecCCCCCEEEEEEcCCCCcEE
Q 014472 259 TPSVSKPVQSVVAHQSEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALH-TFDSHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~l 333 (424)
+.+. ..++ ....++.+|+++|+ ....+++|+.-| +.++.-+-.+.... .+..-.++|.++.|. | .++
T Consensus 102 ~~~~---~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lI 173 (846)
T KOG2066|consen 102 TDDE---ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLI 173 (846)
T ss_pred CCcc---ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--C-cEE
Confidence 7664 2222 34678999999997 223588999888 87776554333322 245557899999996 3 478
Q ss_pred EEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 334 ASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
|-++.+| |++||+...........+... .........+.|.++.+ +++ |...+|+|..++.
T Consensus 174 AWand~G-v~vyd~~~~~~l~~i~~p~~~--------~R~e~fpphl~W~~~~~-LVI--GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 174 AWANDDG-VKVYDTPTRQRLTNIPPPSQS--------VRPELFPPHLHWQDEDR-LVI--GWGDSVKICSIKK 234 (846)
T ss_pred EEecCCC-cEEEeccccceeeccCCCCCC--------CCcccCCCceEecCCCe-EEE--ecCCeEEEEEEec
Confidence 8888888 999999876543322211100 00112245688988877 443 4556789988883
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.22 E-value=0.0013 Score=56.97 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=103.2
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe
Q 014472 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
+. .+++++.++.|..||..+++.... ... ...+...... .+..++ .+..++.|+.+|.++++. +-..
T Consensus 36 ~~-~v~~~~~~~~l~~~d~~tG~~~W~------~~~-~~~~~~~~~~-~~~~v~-v~~~~~~l~~~d~~tG~~---~W~~ 102 (238)
T PF13360_consen 36 GG-RVYVASGDGNLYALDAKTGKVLWR------FDL-PGPISGAPVV-DGGRVY-VGTSDGSLYALDAKTGKV---LWSI 102 (238)
T ss_dssp TT-EEEEEETTSEEEEEETTTSEEEEE------EEC-SSCGGSGEEE-ETTEEE-EEETTSEEEEEETTTSCE---EEEE
T ss_pred CC-EEEEEcCCCEEEEEECCCCCEEEE------eec-cccccceeee-cccccc-cccceeeeEecccCCcce---eeee
Confidence 44 588888999999999988743221 121 1221111122 233344 566788999999998875 3321
Q ss_pred -ccc--CC---CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCC----------E-EEEEEcCCCCcE
Q 014472 270 -VAH--QS---EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEE----------V-FQVGWNPKNETI 332 (424)
Q Consensus 270 -~~~--~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~----------v-~~~~~sp~~~~~ 332 (424)
... .. ......+. +. .++++..++.|..+|+++ ++.+......... + ..+.+. ++ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 175 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--R 175 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--E
T ss_pred ccccccccccccccCceEe--cC-EEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC--E
Confidence 111 11 12223333 55 477777899999999998 6666666543322 1 222333 33 4
Q ss_pred EEEEeCCCe-EEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 333 LASCCLGRR-LMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 333 l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
++.++.++. +.+ |+.++. .+.... ...+..+ ....+. .|+.++.++.|..||+.++..
T Consensus 176 v~~~~~~g~~~~~-d~~tg~--------------~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGE--------------KLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTE--------------EEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTEE
T ss_pred EEEEcCCCeEEEE-ECCCCC--------------EEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCCE
Confidence 556666665 555 988863 223222 1223332 335566 455556899999999998853
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00019 Score=67.14 Aligned_cols=189 Identities=14% Similarity=0.156 Sum_probs=111.4
Q ss_pred CceeEEEecCCCCcEEEEEecC---CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 126 GEVNRARYMPQNPFLIATKTVS---AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
..+..-+|+|++..+....-.. ..+.++++.. +....+..+.++ -..-+|+|+|..++++...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--------g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--------GKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccC--------CccceeeccCCc---cCCccCCCCCCEEEEEECCCCC
Confidence 4566678888887544332222 3588889887 223333333333 4467899999987888888887
Q ss_pred EEEE--eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE--EECCCCCCCCCeeEecccCCCeeE
Q 014472 203 ICLW--DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI--WDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 203 i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i--~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
..|| |+..... ..+....+.-..=.|+|+|+.++.+.+..|.-.| +|+..... ..+......-..
T Consensus 262 ~~iy~~dl~~~~~-------~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~ 330 (425)
T COG0823 262 PDIYLMDLDGKNL-------PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSN 330 (425)
T ss_pred ccEEEEcCCCCcc-------eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcC
Confidence 5555 5554431 1122222222355799999998888777777444 45554432 222222222237
Q ss_pred EEecCCCCeEEEEEeCCCc--EEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC
Q 014472 279 LAFNPFNEWILATGSTDKT--VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
-.|+|+|.+++.....+|. |.+.|+.+... ++.+. +......-.|.+++..++.+++.
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 7899999976666644555 66777765332 33332 34445566788888654444443
No 327
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.18 E-value=0.0011 Score=61.81 Aligned_cols=217 Identities=13% Similarity=0.031 Sum_probs=115.3
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCe-----eeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEG-----YGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN 214 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 214 (424)
.++.++.+|.|+.||..+ .+............ .+.... +. .++.+..+|.+..+|+.++...
T Consensus 147 ~v~v~~~~g~l~a~d~~t----------G~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAAT----------GERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EEEEECCCCeEEEEEcCC----------CceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEe
Confidence 455567789999999876 22222222111100 011111 22 5778888899999999877543
Q ss_pred CcccceeeeecCC--cc---e-eeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeE
Q 014472 215 KSLEAMQIFKVHE--GV---V-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWI 288 (424)
Q Consensus 215 ~~~~~~~~~~~~~--~~---v-~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 288 (424)
..... ....+.. .. + ....+ .+..++ +++.+|.++.+|.++++. +-... . ........ .+. .
T Consensus 214 W~~~~-~~~~g~~~~~~~~~~~~~p~~--~~~~vy-~~~~~g~l~a~d~~tG~~---~W~~~-~-~~~~~p~~--~~~-~ 281 (377)
T TIGR03300 214 WEQRV-ALPKGRTELERLVDVDGDPVV--DGGQVY-AVSYQGRVAALDLRSGRV---LWKRD-A-SSYQGPAV--DDN-R 281 (377)
T ss_pred eeecc-ccCCCCCchhhhhccCCccEE--ECCEEE-EEEcCCEEEEEECCCCcE---EEeec-c-CCccCceE--eCC-E
Confidence 21110 0000000 00 0 01111 133444 677899999999988764 22221 1 11122222 244 4
Q ss_pred EEEEeCCCcEEEEECCCCCCcceeecC-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeee
Q 014472 289 LATGSTDKTVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 289 l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
+++++.+|.+..+|..+ ++.+..... ......+... .+. .|++++.+|.|.++|..++ +.+
T Consensus 282 vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG--------------~~~ 343 (377)
T TIGR03300 282 LYVTDADGVVVALDRRS-GSELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDG--------------SFV 343 (377)
T ss_pred EEEECCCCeEEEEECCC-CcEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCC--------------CEE
Confidence 66778899999999987 554443321 1112222222 233 5788899999999998876 334
Q ss_pred EEEcCCCCCcc-eEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 368 FIHGGHTSKIS-DFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 368 ~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
.....+...+. ...+ .++. |+.++.||.|+.|
T Consensus 344 ~~~~~~~~~~~~sp~~-~~~~--l~v~~~dG~l~~~ 376 (377)
T TIGR03300 344 ARLKTDGSGIASPPVV-VGDG--LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEcCCCccccCCEE-ECCE--EEEEeCCceEEEe
Confidence 44443333222 2222 2333 5566789988776
No 328
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.17 E-value=0.0013 Score=61.39 Aligned_cols=228 Identities=13% Similarity=0.020 Sum_probs=119.8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
.+++++.+|.++.+|..+ .+....... ...+.+.-.. .+. .++.++.+|.|..||.++++.......
T Consensus 107 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~-~~~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAED----------GKELWRAKL-SSEVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred EEEEEcCCCEEEEEECCC----------CcEeeeecc-CceeecCCEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 566778899999999876 122222211 1122111111 133 577788899999999988754332211
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccC-CC------e-eEEEecCCCCeEEEE
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQ-SE------V-NCLAFNPFNEWILAT 291 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~------v-~~i~~~~~~~~~l~~ 291 (424)
.......... ...... + . .++.+..+|.+..+|+++++............ .. + .+..+ .+. .+++
T Consensus 174 ~~~~~~~~~~-~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~ 246 (377)
T TIGR03300 174 VTPALTLRGS-ASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYA 246 (377)
T ss_pred CCCceeecCC-CCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEE
Confidence 0000000000 011111 2 2 34577788999999998876421111000000 00 0 11111 134 4667
Q ss_pred EeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEc
Q 014472 292 GSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG 371 (424)
Q Consensus 292 g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (424)
++.+|.+..||..+ ++.+..... . ....... .+. .++.++.+|.+..+|..++.. +....
T Consensus 247 ~~~~g~l~a~d~~t-G~~~W~~~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~--------------~W~~~ 306 (377)
T TIGR03300 247 VSYQGRVAALDLRS-GRVLWKRDA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE--------------LWKND 306 (377)
T ss_pred EEcCCEEEEEECCC-CcEEEeecc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcE--------------EEccc
Confidence 77899999999987 554444331 1 1112222 233 466778899999999987642 21111
Q ss_pred CC-CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 372 GH-TSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 372 ~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
.. ......... .+. .+++++.+|.|++++..++.+.
T Consensus 307 ~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred cccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEE
Confidence 10 111122222 244 5777889999999999887554
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.00012 Score=67.77 Aligned_cols=261 Identities=13% Similarity=0.137 Sum_probs=130.2
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCC------CC---------------------------CCCCCCcEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKP------PL---------------------------DGACSPDLR 173 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~------~~---------------------------~~~~~~~~~ 173 (424)
.|+.+.|.+... -||+|...|.|.||......... .. .....|..-
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578899999765 68889999999999876432211 00 001223334
Q ss_pred EecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceee---eecCCcceeeEEeeC-----CC--CcEE
Q 014472 174 LRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI---FKVHEGVVEDVAWHL-----RH--EYLF 243 (424)
Q Consensus 174 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~-----~~--~~~~ 243 (424)
+....++|++++.+.-| +++.|..+|.+.|.|++........ .+.. -......++++.|.- ++ .-++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 45567899999997543 7999999999999999765322110 0111 111334677887752 11 1345
Q ss_pred EEEeCCCeEEEEECCC-CCCC---CCeeEecccCCCeeEEE-ecCC-C-------------------CeEEEEEeCCCcE
Q 014472 244 GSVGDDQYLLIWDLRT-PSVS---KPVQSVVAHQSEVNCLA-FNPF-N-------------------EWILATGSTDKTV 298 (424)
Q Consensus 244 ~s~~~dg~i~i~d~~~-~~~~---~~~~~~~~~~~~v~~i~-~~~~-~-------------------~~~l~~g~~dg~i 298 (424)
.+|...|.+.+|.+.- .... ........+.++|..|. ++.+ | +.++++ ..+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-Ecccce
Confidence 5888999999998852 1110 01111124556666554 3221 1 113333 346789
Q ss_pred EEEECCCCCCcceeecCCCCCEEEEEEcC----CCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC
Q 014472 299 KLFDLRKISTALHTFDSHKEEVFQVGWNP----KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 374 (424)
+++...+ .+..+...........+.+-+ .+...|++-..+|.|++|.+...++..... +. ...+.
T Consensus 238 rv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~--------l~--~~~d~ 306 (395)
T PF08596_consen 238 RVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS--------LP--PPLDS 306 (395)
T ss_dssp EEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE---------S--S---H
T ss_pred EEEeCCC-CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc--------CC--Ccccc
Confidence 9999887 333333332223334445531 233578888999999999998764321110 00 01122
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
..+....++++|. +++-.+ ...+.++.+-
T Consensus 307 ~~~~~ssis~~Gd-i~~~~g-psE~~l~sv~ 335 (395)
T PF08596_consen 307 RRLSSSSISRNGD-IFYWTG-PSEIQLFSVW 335 (395)
T ss_dssp HHHTT-EE-TTS--EEEE-S-SSEEEEEEEE
T ss_pred ccccccEECCCCC-EEEEeC-cccEEEEEEE
Confidence 3456778899998 455444 3344544443
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.13 E-value=0.0041 Score=53.55 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=111.5
Q ss_pred EEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC-CcceeeEEeeCCCCcEEEEEeCCCe
Q 014472 173 RLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH-EGVVEDVAWHLRHEYLFGSVGDDQY 251 (424)
Q Consensus 173 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~s~~~dg~ 251 (424)
.+.+-...+.+|+|+|+...++++....+.|...+.. +. .+..+.-. .+....|++..++. ++++--.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~------vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK------VLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC------EEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCc
Confidence 3445556799999999877678888888888888864 32 12222211 35678888887664 3334445899
Q ss_pred EEEEECCCCCCCCCee---Ee-----cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC--CCCccee--------e
Q 014472 252 LLIWDLRTPSVSKPVQ---SV-----VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK--ISTALHT--------F 313 (424)
Q Consensus 252 i~i~d~~~~~~~~~~~---~~-----~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~--------~ 313 (424)
+.++++.......... .+ ..++..+..++|+|.+..+++ +-...-..+|.++. ....+.. .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccc
Confidence 9999985432211111 11 124567899999998886555 45555566666653 1111111 1
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcC-C------CCCcceEEeCCCC
Q 014472 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG-H------TSKISDFSWNPCE 386 (424)
Q Consensus 314 ~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h------~~~v~~~~~~~~~ 386 (424)
...-..+.+++++|....+++.+..+..|.++|..- .. .-...+.. . -...-.|+|.++|
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~~------------~~~~~L~~g~~gl~~~~~QpEGIa~d~~G 233 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-RV------------VSSLSLDRGFHGLSKDIPQPEGIAFDPDG 233 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---E------------EEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-CE------------EEEEEeCCcccCcccccCCccEEEECCCC
Confidence 123346789999998888888888899999999543 21 11222222 1 1246789999999
Q ss_pred CcEEEEEeCCCcEEEE
Q 014472 387 DWVISSVAEDNILQIW 402 (424)
Q Consensus 387 ~~~l~s~~~d~~i~iw 402 (424)
+ +.++ ++-+..++|
T Consensus 234 ~-LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 234 N-LYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEE-ETTTEEEEE
T ss_pred C-EEEE-cCCceEEEe
Confidence 8 4544 677766665
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.0061 Score=56.28 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=126.8
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---------CCeeeEEecCCCCceEE
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---------TEGYGLSWSKFKEGHLL 195 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~l~ 195 (424)
...+....|+|++. .+|.. .++.|.+++........ ...... ...+.|-. +.-.++-|+|++..+++
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~~~~~~~~-lT~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~ 117 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFV-RDNNLYLRDLATGQETQ-LTTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF 117 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEE-ETTEEEEESSTTSEEEE-SES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred ccccccceeecCCC-eeEEE-ecCceEEEECCCCCeEE-eccccc-eeEEcCccceeccccccccccceEECCCCCEEEE
Confidence 56788999999987 45554 36789999876521000 000000 00011111 12367889999985333
Q ss_pred EEeCCCcEEE-----------------------------------EeCCCCCCCCcccceeeeecCCcceeeEEeeCCCC
Q 014472 196 SGSDDAQICL-----------------------------------WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE 240 (424)
Q Consensus 196 s~~~dg~i~v-----------------------------------wd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 240 (424)
.--.+..|.. +|+.+++.. .+........-...+..+.|.+++.
T Consensus 118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTE
T ss_pred EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCc
Confidence 3333333332 333222110 0000001112344677889999887
Q ss_pred cEE-EEEeCCC---eEEEEECCCCCCCCCeeEecccCCC---eeEEEec-CCCCeEEEEEeCCCcEEEEECCCCCCccee
Q 014472 241 YLF-GSVGDDQ---YLLIWDLRTPSVSKPVQSVVAHQSE---VNCLAFN-PFNEWILATGSTDKTVKLFDLRKISTALHT 312 (424)
Q Consensus 241 ~~~-~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~---v~~i~~~-~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 312 (424)
.++ .....+. .+.++|..++... .+. ....... -..+.|. +++..+|.....+|.-+||-+...+.....
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~-~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETR-VVL-EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCE-EEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred EEEEEEcccCCCEEEEEEEECCCCcee-EEE-EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 333 3333332 3667788765531 111 1122222 2355554 667767777778886555554443444555
Q ss_pred ecCCCCCEEE-EEEcCCCCcEEEEEeCCC--eEEEeeCCCC-CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014472 313 FDSHKEEVFQ-VGWNPKNETILASCCLGR--RLMVWDLSRI-DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 313 ~~~~~~~v~~-~~~sp~~~~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
+....-.|.. +.|++.++.+++++..++ .-.||.+... . ..+..+......-..+.|+|++++
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-------------~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-------------GEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-------------TEEEESSTTSSTTEEEEE-TTSSE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-------------CCeEeccCCCCCceEEEECCCCCE
Confidence 6555666755 778888877777777633 4445544332 1 112223322222258999999998
Q ss_pred EEEEEeCC
Q 014472 389 VISSVAED 396 (424)
Q Consensus 389 ~l~s~~~d 396 (424)
++.+.+.-
T Consensus 342 ~v~~~s~~ 349 (353)
T PF00930_consen 342 YVDTYSGP 349 (353)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 77776643
No 332
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.95 E-value=0.014 Score=55.38 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=131.0
Q ss_pred eeEEEecCCCCcEEEEEecCC----eEEEEeCCCCCCCCCCCCCCCCcE-EEecCCCCeeeEEecCCCCceEEEEeCC--
Q 014472 128 VNRARYMPQNPFLIATKTVSA----EVYVFDYSKHPSKPPLDGACSPDL-RLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (424)
Q Consensus 128 v~~i~~~p~~~~~latg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 200 (424)
+...+++|++..++.+-+..| .++++|+.+ + +.+. .+.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t--------g--~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET--------G--KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT--------T--EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC--------C--cCcCCcccc--cccceEEEeCCCCEEEEEEeCccc
Confidence 345788999985555544444 699999987 2 2111 1111 1122499999988655655333
Q ss_pred --------CcEEEEeCCCCCCCCcccceeeeecCCcc--eeeEEeeCCCCcEEEEEeCCC---eEEEEECCCCC-CCCCe
Q 014472 201 --------AQICLWDINAAPKNKSLEAMQIFKVHEGV--VEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPS-VSKPV 266 (424)
Q Consensus 201 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~s~~~dg---~i~i~d~~~~~-~~~~~ 266 (424)
..|..|.+.+.... ....+...... ...+..+++++++++...... .+.+.|+.... .....
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~----d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSE----DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred ccccCCCCcEEEEEECCCChHh----CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 23778888665321 12333333322 567889999998887665544 47888887641 11123
Q ss_pred eEecccCCCee-EEEecCCCCeEEEEEeC---CCcEEEEECCCCCC--cceeecCCCCCEEEEEEcCCCCcEEEEEeCCC
Q 014472 267 QSVVAHQSEVN-CLAFNPFNEWILATGST---DKTVKLFDLRKIST--ALHTFDSHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 267 ~~~~~~~~~v~-~i~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
..+......+. .+... +..+++.... .+.|.-.++..... ....+..+...+.-..+...+..+++....++
T Consensus 270 ~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 33333344443 34443 4434444332 35677778876432 12245555554333333444555777777666
Q ss_pred e--EEEeeCCCCCcccCCCccCCCCCeeeEEE-cCCCCCcceEEeCCCCCcEEEEEe---CCCcEEEEecCCCCC
Q 014472 341 R--LMVWDLSRIDEEQTPEDAEDGPPELLFIH-GGHTSKISDFSWNPCEDWVISSVA---EDNILQIWQMAENIY 409 (424)
Q Consensus 341 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~iw~~~~~~~ 409 (424)
. |+++++..+ ...... ..-.+.|..+...++++.+.++.+ .-+.+..||+.++..
T Consensus 348 ~~~l~v~~~~~~--------------~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 348 SSRLRVYDLDDG--------------KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEEETT-T--------------EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ccEEEEEECCCC--------------cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4 778888711 111111 112233566666666665555544 234677788877653
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=2e-05 Score=76.19 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=112.3
Q ss_pred cceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC-
Q 014472 218 EAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK- 296 (424)
Q Consensus 218 ~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg- 296 (424)
+....+..|....+|++|+...++ ++.|+..|.|++|++.++.. ......|.++|+-+.-+.+|..+|.+++...
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCc
Confidence 455667778899999999988765 56999999999999999875 5566789999999999999986555555444
Q ss_pred cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCC
Q 014472 297 TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSK 376 (424)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 376 (424)
-..+|++.....+.+++... .++.|+..... -+.|+......|||+.+....+..-. -..+....
T Consensus 1168 lsaLW~~~s~~~~~Hsf~ed----~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt----------~~~~~~y~ 1232 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDED----KAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLT----------DTVTSSYS 1232 (1516)
T ss_pred hHHHhccccccCcccccccc----ceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcC----------cchhhhhh
Confidence 57899998877777777643 46788765432 23333334689999998764332110 00011112
Q ss_pred cceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 377 ISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 377 v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
-+.+.|+|+.. ++. .|| .+||+..
T Consensus 1233 ~n~a~FsP~D~-LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1233 NNLAHFSPCDT-LIL---NDG--VLWDVRI 1256 (1516)
T ss_pred ccccccCCCcc-eEe---eCc--eeeeecc
Confidence 25567788777 443 355 3577654
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.93 E-value=0.019 Score=53.93 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=88.6
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc-ceeeeecCC
Q 014472 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE-AMQIFKVHE 227 (424)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~ 227 (424)
.|+||+... ..+.++.-..+.+.++.|..+. .|++...||.++++|+.... ...+. .........
T Consensus 62 ~I~iys~sG-----------~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e 127 (410)
T PF04841_consen 62 SIQIYSSSG-----------KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLE 127 (410)
T ss_pred EEEEECCCC-----------CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-eechhhhccccCccc
Confidence 588998775 3333333333889999998854 37778899999999986432 00000 000011111
Q ss_pred cceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCC-CCCCeeEecc-----cCC-CeeE-EEecCCCCeEEEEEeCCCcEE
Q 014472 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS-VSKPVQSVVA-----HQS-EVNC-LAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~-~~~~~~~~~~-----~~~-~v~~-i~~~~~~~~~l~~g~~dg~i~ 299 (424)
..+....+...| ++ .-..++.+.+..--... ..+....... +.. .... ..++.+.. ..+....++.+.
T Consensus 128 ~~i~~~~~~~~G--iv-vLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~ 203 (410)
T PF04841_consen 128 CRIFAIWFYKNG--IV-VLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIY 203 (410)
T ss_pred ccccccccCCCC--EE-EECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEE
Confidence 222222332233 22 22344444443221111 0000000000 000 0111 22333333 333444455666
Q ss_pred EEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 300 LFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+.+-... .. +. ..+++..++.||+++ ++|.-..+|.+.+....-
T Consensus 204 ~i~~~~~-~~---i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 204 IIDENSF-KQ---ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred EEEcccc-cc---cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcc
Confidence 5543321 11 22 246899999999997 688888899988887544
No 335
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.0005 Score=63.43 Aligned_cols=182 Identities=15% Similarity=0.285 Sum_probs=109.2
Q ss_pred eeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-----------CC
Q 014472 181 GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------DD 249 (424)
Q Consensus 181 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-----------~d 249 (424)
-+-+.|||.|. +|+|--..| |.+|-=..- ..++.+. |. .|.-+.|||...+|+ +=+ ..
T Consensus 213 etyv~wSP~GT-YL~t~Hk~G-I~lWGG~~f------~r~~RF~-Hp-~Vq~idfSP~EkYLV-T~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQG-IALWGGESF------DRIQRFY-HP-GVQFIDFSPNEKYLV-TYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeEEecCCce-EEEEEeccc-eeeecCccH------HHHHhcc-CC-CceeeecCCccceEE-EecCCccccCcccCCC
Confidence 35789999998 788876654 778954322 2222232 43 578899999998765 433 23
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCC
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKN 329 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~ 329 (424)
..++|||++++...+....+......-.-+.|+.++.+ +|.-.. .+|.||+..+ -.++..-...-..|....|+|.+
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCc
Confidence 67999999998864444433332223345689998884 665554 5799998776 23332222334678899999987
Q ss_pred CcEEEEEeC-----CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEE
Q 014472 330 ETILASCCL-----GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIS 391 (424)
Q Consensus 330 ~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 391 (424)
. +||-=.. -..+.+-.+.+.+ .+++..-|.-.=..+.|..+|.+|.+
T Consensus 359 ~-llAYwtpe~~~~parvtL~evPs~~--------------~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 359 N-LLAYWTPETNNIPARVTLMEVPSKR--------------EIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred c-eEEEEcccccCCcceEEEEecCccc--------------eeeeccceeeeccEEEeccCCcEEEE
Confidence 4 5653221 1234444444432 23333333322344677788886544
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.02 Score=53.41 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=152.7
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
....+.+.|++..+.++-.....+...+... .........-......++.++.+....+....+..|.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~----------n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vi 101 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS----------NTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVI 101 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc----------ceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEE
Confidence 5667788888865555544444344433331 000111111113345778888888666666677899999
Q ss_pred eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe--CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCC
Q 014472 207 DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPF 284 (424)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 284 (424)
|......... .. -......+++++++..++++-. .++++.+.|..+... +.....-..+ ..++++|+
T Consensus 102 d~~~~~~~~~------~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~~P-~~~a~~p~ 170 (381)
T COG3391 102 DTATNTVLGS------IP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGNTP-TGVAVDPD 170 (381)
T ss_pred cCcccceeeE------ee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCCCc-ceEEECCC
Confidence 9665432111 11 1226678999999988887777 478899999887664 3333222234 89999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCCCcce-e---ecCCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEeeCCCCCcccCCCc
Q 014472 285 NEWILATGSTDKTVKLFDLRKISTALH-T---FDSHKEEVFQVGWNPKNETILASCCLG--RRLMVWDLSRIDEEQTPED 358 (424)
Q Consensus 285 ~~~~l~~g~~dg~i~iwd~~~~~~~~~-~---~~~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~ 358 (424)
+..++++-..++.|.+.|... ..... . ...-...-..+.++|++..+.++...+ +.+...|.....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------- 242 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------- 242 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-------
Confidence 997777777889999999775 22221 0 111223456789999998655555554 578888887642
Q ss_pred cCCCCCeeeEE--EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 359 AEDGPPELLFI--HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 359 ~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.... ..+.. ....+..+|+|.+..+.-+..+.+.+-|..+..+
T Consensus 243 -------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 243 -------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred -------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 1111 11111 3567889999996555545567888888877544
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.90 E-value=0.00073 Score=67.10 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=97.1
Q ss_pred CCCcEEEE-EeCCCeEEEEECCCCCCCCCeeEecccCCC-eeEEEecC-----CCCeEEEEEeCCCcEEEEECCCCCCcc
Q 014472 238 RHEYLFGS-VGDDQYLLIWDLRTPSVSKPVQSVVAHQSE-VNCLAFNP-----FNEWILATGSTDKTVKLFDLRKISTAL 310 (424)
Q Consensus 238 ~~~~~~~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~~l~~g~~dg~i~iwd~~~~~~~~ 310 (424)
....++.. ......|+-.|+..++. +..+..+... |..++-.. ... -.+.|-.+..+..||.|-.+..+
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKV---V~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKV---VEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcE---EEEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCce
Confidence 33444433 34567899999999875 6777666543 55554321 122 24567788999999999754322
Q ss_pred eeec----CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014472 311 HTFD----SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 311 ~~~~----~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
..-. ......+|++-+.+| .||.|+.+|.||+||-- +. +....+.+-..+|.+|..+.||
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~-------------~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK-------------RAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred eeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch-------------hhhhcCCCCCCCeeEEEecCCC
Confidence 2111 134467778777777 59999999999999942 21 1122334556899999999999
Q ss_pred CcEEEEEeCCCcEEEEecC
Q 014472 387 DWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 387 ~~~l~s~~~d~~i~iw~~~ 405 (424)
+|+|+|+ +..|.+.+..
T Consensus 631 kwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 631 KWILATC--KTYLLLIDTL 647 (794)
T ss_pred cEEEEee--cceEEEEEEe
Confidence 9988875 4678888763
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.89 E-value=0.0011 Score=63.43 Aligned_cols=109 Identities=12% Similarity=0.221 Sum_probs=76.5
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCCCC-CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC------
Q 014472 236 HLRHEYLFGSVGDDQYLLIWDLRTPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST------ 308 (424)
Q Consensus 236 ~~~~~~~~~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------ 308 (424)
.++|+..++ .++.|.+.|.++... ...+...-.-......++++|+|+++++++..+.++.|+|+.+...
T Consensus 285 vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 456765553 367899999987100 0012222234667889999999999888888999999999987442
Q ss_pred -----cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 309 -----ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 309 -----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
.+..... ...-...+|.++|. .+.+...|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 1222332 33445788999984 778888899999999876
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0079 Score=56.06 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=133.8
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe--CCCcE
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS--DDAQI 203 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i 203 (424)
..-..++.++.+....++...++.|.+.|... ........ -......+++.+++..+.++-. .++++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~----------~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT----------NTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc----------cceeeEee-eccCCceEEECCCCCEEEEEecccCCceE
Confidence 34457788888887788777789999999655 11122111 2226678999999885444444 36888
Q ss_pred EEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC-CeeEecccCCCeeEEEec
Q 014472 204 CLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~ 282 (424)
.+.|..+... +.....-..+ ..+++.|++..++++-..++.|.+.|........ .......-......+.++
T Consensus 143 svid~~t~~~------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 143 SVIDAATNKV------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred EEEeCCCCeE------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence 8888876632 2222211233 8899999999888787789999999977654321 000011223445678999
Q ss_pred CCCCeEEEEEeCC--CcEEEEECCCCCCccee-ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 283 PFNEWILATGSTD--KTVKLFDLRKISTALHT-FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 283 ~~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|++.++.++-..+ +.+...|... +..... ..........+..+|.+..+.+.-+..+.+.+-|.....
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 9999766555554 6899999887 333332 222111566789999997555554566788888887643
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.88 E-value=0.003 Score=59.46 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=86.1
Q ss_pred eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc
Q 014472 149 EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG 228 (424)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 228 (424)
.|+.+++..................+.........+.++|++. .+++ +.||...|+..... + ....+
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~------r-----~k~~G 69 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAW------R-----NKAFG 69 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTT------E-----EEEEE
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCC------c-----ccccC
Confidence 4666666653221111112233444555556689999999887 4444 66788888873221 1 11235
Q ss_pred ceeeEEeeCCCCcEEEEEeCCCeEEEE-ECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014472 229 VVEDVAWHLRHEYLFGSVGDDQYLLIW-DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS 307 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 307 (424)
....+.|.+.+ -+|+-...+.|.|+ ++.... .+.+.. ...+..|-. |. +|+..+. +.|.+||+.+ +
T Consensus 70 ~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~-~k~i~~----~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~-~ 136 (443)
T PF04053_consen 70 SGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV-VKSIKL----PFSVEKIFG---GN-LLGVKSS-DFICFYDWET-G 136 (443)
T ss_dssp E-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T-T---------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--
T ss_pred ceeEEEEecCc--cEEEEECCCeEEEEEcCcccc-ceEEcC----CcccceEEc---Cc-EEEEECC-CCEEEEEhhH-c
Confidence 66778899854 46677778899996 443222 112211 123444433 65 5655554 4899999998 6
Q ss_pred CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 308 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..+..+... +|..+.|++++. +++..+.+ .+.|++...
T Consensus 137 ~~i~~i~v~--~vk~V~Ws~~g~-~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 137 KLIRRIDVS--AVKYVIWSDDGE-LVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -EEEEESS---E-EEEEE-TTSS-EEEEE-S--SEEEEEE-H
T ss_pred ceeeEEecC--CCcEEEEECCCC-EEEEEeCC-eEEEEEecc
Confidence 888888753 489999999996 56666655 588877654
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00064 Score=65.95 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=59.2
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEE
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLW 206 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 206 (424)
.+++++|+|.. .+||.|-.-|.+.+|.... .........|..+|..+.|+++|. .++++..-|.|.+|
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~----------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lw 128 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT----------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLW 128 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC----------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEE
Confidence 45669999965 5899999999999999876 222233456999999999999998 79999999999999
Q ss_pred eCCC
Q 014472 207 DINA 210 (424)
Q Consensus 207 d~~~ 210 (424)
....
T Consensus 129 r~d~ 132 (1416)
T KOG3617|consen 129 RYDV 132 (1416)
T ss_pred Eeee
Confidence 8763
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.0045 Score=57.44 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=111.3
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCC-------------------------------------Ccccceee
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKN-------------------------------------KSLEAMQI 222 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------------------------------------~~~~~~~~ 222 (424)
.|+.+.|.+... -|++|...|.|.||.....+.. ..+.+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 477888888655 5999999999998865432111 01123334
Q ss_pred eecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeE--ecc------cCCCeeEEEecC-----CC--Ce
Q 014472 223 FKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQS--VVA------HQSEVNCLAFNP-----FN--EW 287 (424)
Q Consensus 223 ~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~--~~~------~~~~v~~i~~~~-----~~--~~ 287 (424)
+....++|++++.+.-| ++|.|..+|.+.|.|+|.+.. +.. +.. ....++++.|.. ++ .-
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav---I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV---IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE---EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE---EeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 44567899999998665 788999999999999998664 322 111 234678888852 11 23
Q ss_pred EEEEEeCCCcEEEEECCC-CCC-----cceeecCCCCCEEEEE-EcCC-C-------------------CcEEEEEeCCC
Q 014472 288 ILATGSTDKTVKLFDLRK-IST-----ALHTFDSHKEEVFQVG-WNPK-N-------------------ETILASCCLGR 340 (424)
Q Consensus 288 ~l~~g~~dg~i~iwd~~~-~~~-----~~~~~~~~~~~v~~~~-~sp~-~-------------------~~~l~s~~~dg 340 (424)
++++|...|.+.+|.+-- ... .......+.++|..+. ++.+ + +.++++++ +.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~ 235 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES 235 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence 688999999999998752 111 1112224556665554 3221 1 12444444 55
Q ss_pred eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeC-----CCCCcEEEEEeCCCcEEEEecCC
Q 014472 341 RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWN-----PCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.++++...+.+. ....+. ..-....+.+- ..+. .|++-..+|.++++.+..
T Consensus 236 ~irv~~~~~~k~-------------~~K~~~-~~~~~~~~~vv~~~~~~~~~-~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 236 DIRVFKPPKSKG-------------AHKSFD-DPFLCSSASVVPTISRNGGY-CLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEE-TT---E-------------EEEE-S-S-EEEEEEEEEEEE-EEEEE-EEEEEETTSEEEEEETTT
T ss_pred ceEEEeCCCCcc-------------cceeec-cccccceEEEEeecccCCce-EEEEEECCCcEEEEECCC
Confidence 699998876432 111221 11112223332 2333 688888999999999876
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.026 Score=53.20 Aligned_cols=224 Identities=12% Similarity=0.172 Sum_probs=112.3
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
...-.+..+.++|+++ ++++ +.+|...||.... .... ..+......|.+.+ .+|+-...+.
T Consensus 30 ~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~----------~r~k-----~~G~g~~~vw~~~n--~yAv~~~~~~ 90 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALA----------WRNK-----AFGSGLSFVWSSRN--RYAVLESSST 90 (443)
T ss_dssp E-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTT----------TEEE-----EEEE-SEEEE-TSS--EEEEE-TTS-
T ss_pred CCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccC----------Cccc-----ccCceeEEEEecCc--cEEEEECCCe
Confidence 3455688999999987 5555 4588889988433 1111 12345678899833 4888777889
Q ss_pred EEEE-eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 203 ICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 203 i~vw-d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
|.++ ++... ....++ ....+..|-. |. +|+..+ ++.|.+||..+++. +..+.. .+|..+.|
T Consensus 91 I~I~kn~~~~-~~k~i~-------~~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~---i~~i~v--~~vk~V~W 152 (443)
T PF04053_consen 91 IKIYKNFKNE-VVKSIK-------LPFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKL---IRRIDV--SAVKYVIW 152 (443)
T ss_dssp EEEEETTEE--TT------------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--E---EEEESS---E-EEEEE
T ss_pred EEEEEcCccc-cceEEc-------CCcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcce---eeEEec--CCCcEEEE
Confidence 9996 44222 111221 1123344432 55 444444 45899999998764 555442 24899999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCC--------C--CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 282 NPFNEWILATGSTDKTVKLFDLRKI--------S--TALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~~~~--------~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
++++. ++|..+. ..+.+++.... + ..+..+..-...|.+.+|..+ -++.+.. . .|+- +..+.
T Consensus 153 s~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~Ge 224 (443)
T PF04053_consen 153 SDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVNGE 224 (443)
T ss_dssp -TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EETTE
T ss_pred ECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEcCC
Confidence 99998 4666654 46888775531 0 023333322578899999865 3444443 3 5665 32221
Q ss_pred cccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
...+..+ ..+++=+.+.+... .+.....|+.+..+.+...
T Consensus 225 ------------~~~i~~l---d~~~yllgy~~~~~-~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 225 ------------TGIIAHL---DKPLYLLGYLPKEN-RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ------------EEEEEE----SS--EEEEEETTTT-EEEEE-TT--EEEEE--HH
T ss_pred ------------cceEEEc---CCceEEEEEEccCC-EEEEEECCCCEEEEEECHH
Confidence 1223322 33566667777656 5777788888888877654
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.0021 Score=61.70 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=97.9
Q ss_pred ceeeEEeeCCCCcEEEEEe--C-CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 229 VVEDVAWHLRHEYLFGSVG--D-DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~--~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
...-+++++++..+++++. . ..++...+..... .+..+.. ..+ -++.++|++.++ .++.|.+.|.++
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvfni--~~i--ea~vkdGK~~~V---~gn~V~VID~~t 305 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVFNI--ARI--EEAVKAGKFKTI---GGSKVPVVDGRK 305 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEEch--HHH--HHhhhCCCEEEE---CCCEEEEEECCc
Confidence 4456788888887776652 2 1223333322111 0111100 000 123456775443 257899999987
Q ss_pred ----CCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEE
Q 014472 306 ----ISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 306 ----~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
....+..+. -......+.++|+|+++++++..+.++.|.|+.+......-. .+....+.....- .......+
T Consensus 306 ~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~--~~~~~~vvaevev-GlGPLHTa 381 (635)
T PRK02888 306 AANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK--IKPRDAVVAEPEL-GLGPLHTA 381 (635)
T ss_pred cccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc--CCccceEEEeecc-CCCcceEE
Confidence 233444444 366788999999999888888889999999998865321100 0001122222222 22356788
Q ss_pred eCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 382 WNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 382 ~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
|.++|. ...|---|..|..|++...
T Consensus 382 FDg~G~-aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 382 FDGRGN-AYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred ECCCCC-EEEeEeecceeEEEehHHH
Confidence 999998 7888889999999999873
No 345
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.66 E-value=0.021 Score=49.32 Aligned_cols=185 Identities=12% Similarity=0.041 Sum_probs=100.4
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCc
Q 014472 137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKS 216 (424)
Q Consensus 137 ~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 216 (424)
+. .+.+++.++.|+.||..+ .+....... ...+...... .+. .++.++.++.|..+|..++.....
T Consensus 36 ~~-~v~~~~~~~~l~~~d~~t----------G~~~W~~~~-~~~~~~~~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 36 GG-RVYVASGDGNLYALDAKT----------GKVLWRFDL-PGPISGAPVV-DGG-RVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp TT-EEEEEETTSEEEEEETTT----------SEEEEEEEC-SSCGGSGEEE-ETT-EEEEEETTSEEEEEETTTSCEEEE
T ss_pred CC-EEEEEcCCCEEEEEECCC----------CCEEEEeec-cccccceeee-ccc-ccccccceeeeEecccCCcceeee
Confidence 44 455567899999999876 333444443 2222222111 233 577777888999999888754322
Q ss_pred ccceeeeecCC-cceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCC----------e-eEEEecCC
Q 014472 217 LEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSE----------V-NCLAFNPF 284 (424)
Q Consensus 217 ~~~~~~~~~~~-~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----------v-~~i~~~~~ 284 (424)
... ....... .......+. +.. ++++..++.|..+|+++++. +-........ + ..+.+. +
T Consensus 102 ~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 173 (238)
T PF13360_consen 102 IYL-TSSPPAGVRSSSSPAVD--GDR-LYVGTSSGKLVALDPKTGKL---LWKYPVGEPRGSSPISSFSDINGSPVIS-D 173 (238)
T ss_dssp EEE--SSCTCSTB--SEEEEE--TTE-EEEEETCSEEEEEETTTTEE---EEEEESSTT-SS--EEEETTEEEEEECC-T
T ss_pred ecc-ccccccccccccCceEe--cCE-EEEEeccCcEEEEecCCCcE---EEEeecCCCCCCcceeeecccccceEEE-C
Confidence 100 0000011 111222222 443 44677799999999998774 3333222211 1 233333 2
Q ss_pred CCeEEEEEeCCCc-EEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 285 NEWILATGSTDKT-VKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 285 ~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+ . +..++.++. +.+ |+.+ ++.+.... ...+..+ ....+. .|+.++.++.|..||+++++
T Consensus 174 ~-~-v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 174 G-R-VYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp T-E-EEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETTTTE
T ss_pred C-E-EEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCCCC
Confidence 3 3 556666775 555 9998 44333222 2233332 334554 46666689999999999863
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.018 Score=52.36 Aligned_cols=149 Identities=14% Similarity=0.150 Sum_probs=90.2
Q ss_pred CceEEEEeC----------CCcEEEEeCCCC-CCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 191 EGHLLSGSD----------DAQICLWDINAA-PKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 191 ~~~l~s~~~----------dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
..+|++|.. .|.|.++++... .....++.+... ...++|++++-. +.+++++ .++.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEE--ETTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEe--ecCEEEEEEccC
Confidence 346776643 289999999873 222333333333 347889998866 3345433 458999999988
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee--cCCCCCEEEEEEcCCCCcEEEEEe
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF--DSHKEEVFQVGWNPKNETILASCC 337 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~~l~s~~ 337 (424)
.+...+...+. ....+.++... ++ ++++|.....+.++..+.....+..+ ......++++.|-+++. .++++.
T Consensus 117 ~~~l~~~~~~~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D 191 (321)
T PF03178_consen 117 SKTLLKKAFYD-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGD 191 (321)
T ss_dssp TSSEEEEEEE--BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE
T ss_pred cccchhhheec-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEc
Confidence 66211222221 23356666655 44 68889888888888655422222222 23356789999987775 788999
Q ss_pred CCCeEEEeeCCC
Q 014472 338 LGRRLMVWDLSR 349 (424)
Q Consensus 338 ~dg~i~iwd~~~ 349 (424)
.+|.+.++....
T Consensus 192 ~~gnl~~l~~~~ 203 (321)
T PF03178_consen 192 KDGNLFVLRYNP 203 (321)
T ss_dssp TTSEEEEEEE-S
T ss_pred CCCeEEEEEECC
Confidence 999999998864
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.05 Score=48.69 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=125.7
Q ss_pred EEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCC
Q 014472 131 ARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 131 i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 210 (424)
-.|.+....++.+--..+.|.-|+..+ .....+ .+.+.+.++.....+. .|+++. .-+.++++..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-----------g~~~~~-~~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~ 94 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPET-----------GKKRVF-PSPGGFSSGALIDAGG-RLIACE--HGVRLLDPDT 94 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCc-----------CceEEE-ECCCCcccceeecCCC-eEEEEc--cccEEEeccC
Confidence 356676666677766778888888764 111222 2334444554444343 455544 2355666644
Q ss_pred CCCCCcccceeeeec-CCcceeeEEeeCCCCcEEEEEe-----C-----CCeEEEEECCCCCCCCCeeEecccCCCeeEE
Q 014472 211 APKNKSLEAMQIFKV-HEGVVEDVAWHLRHEYLFGSVG-----D-----DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCL 279 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~s~~-----~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 279 (424)
+.....+ .....+ .....+++...|+|...|-+-+ . -|.|+.+|. .+.. +..+..+-..-+.|
T Consensus 95 ~~~~t~~--~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~---~~l~~~~~~~~NGl 168 (307)
T COG3386 95 GGKITLL--AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV---VRLLDDDLTIPNGL 168 (307)
T ss_pred CceeEEe--ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE---EEeecCcEEecCce
Confidence 4221111 011111 2246778889999875443322 1 133444443 2221 33333445566889
Q ss_pred EecCCCCeEEEEEeCCCcEEEEECCC-CC----C-cceeecCCCCCEEEEEEcCCCCcEEEEEeCCC-eEEEeeCCCCCc
Q 014472 280 AFNPFNEWILATGSTDKTVKLFDLRK-IS----T-ALHTFDSHKEEVFQVGWNPKNETILASCCLGR-RLMVWDLSRIDE 352 (424)
Q Consensus 280 ~~~~~~~~~l~~g~~dg~i~iwd~~~-~~----~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-~i~iwd~~~~~~ 352 (424)
+|+|+++.++++=+..+.|.-|++.. .. . ....+....+..-.++...+|. +.+++..+| .|.+|+.. +
T Consensus 169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-G-- 244 (307)
T COG3386 169 AFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-G-- 244 (307)
T ss_pred EECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-C--
Confidence 99999997666666668888888762 11 1 1122223345566677777774 443444443 79999887 3
Q ss_pred ccCCCccCCCCCeeeEEEcCCCCCcceEEeC-CCCCcEEEEEeCC
Q 014472 353 EQTPEDAEDGPPELLFIHGGHTSKISDFSWN-PCEDWVISSVAED 396 (424)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d 396 (424)
+++..+.-....+++++|- |+.+.|++|+...
T Consensus 245 ------------~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 ------------KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ------------cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 4455555444567788875 4556577776655
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00046 Score=64.74 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=73.9
Q ss_pred CcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCee-EEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
...+.-+.|+|.-. ++|.+..+|.|.++.+.-. .+.++..+...++ +++|.|+|. +||.|-.||+|++-|+.+
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~q----Rlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQ----RLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccc----eeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccC
Confidence 45678899999865 8899999999999988732 3666666777777 999999987 899999999999999998
Q ss_pred CCCcceeecCCCCCEEEEEEcC
Q 014472 306 ISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 306 ~~~~~~~~~~~~~~v~~~~~sp 327 (424)
+.........-...|.++-|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 4433322223356788888874
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.56 E-value=0.034 Score=52.32 Aligned_cols=182 Identities=13% Similarity=-0.002 Sum_probs=95.0
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-cceeeEEeeC--CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHL--RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV 269 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~--~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~ 269 (424)
.++.++.+|.+..+|..+++.............+. .....+.-+| .+..++ .++.+|.+..+|+.+++. +-..
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy-~~~~~g~l~ald~~tG~~---~W~~ 282 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY-ALAYNGNLVALDLRSGQI---VWKR 282 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE-EEEcCCeEEEEECCCCCE---EEee
Confidence 46677788999999988775433221100000000 0001111111 134454 566789999999998764 2111
Q ss_pred cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 270 VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 270 ~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
. ......+.. .+. .++.++.+|.+..+|..+ ++.+-....-. ....+.... +. .|+.++.+|.|.+.|..
T Consensus 283 ~--~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 283 E--YGSVNDFAV--DGG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINRE 353 (394)
T ss_pred c--CCCccCcEE--ECC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECC
Confidence 1 111112222 244 366677899999999987 44333222111 111222221 32 57788999999999998
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCCCcce-EEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISD-FSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
++. .+....-....+.+ ..+ .++ .|+.++.||.|+.+++
T Consensus 354 tG~--------------~~~~~~~~~~~~~s~P~~-~~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 354 DGR--------------FVAQQKVDSSGFLSEPVV-ADD--KLLIQARDGTVYAITR 393 (394)
T ss_pred CCC--------------EEEEEEcCCCcceeCCEE-ECC--EEEEEeCCceEEEEeC
Confidence 763 23333221122221 122 233 3666688999988765
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.55 E-value=0.024 Score=52.34 Aligned_cols=231 Identities=12% Similarity=0.108 Sum_probs=118.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce---eee
Q 014472 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM---QIF 223 (424)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~ 223 (424)
.+.+.|||+.+ .....+......+....|+|+|. .++-.. ++.|.++++.++.. ..+..- ..+
T Consensus 22 ~~~y~i~d~~~-----------~~~~~l~~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIET-----------GEITPLTPPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEETTT-----------TEEEESS-EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEE-EESES--TTTEE
T ss_pred ceeEEEEecCC-----------CceEECcCCccccccceeecCCC-eeEEEe-cCceEEEECCCCCe-EEeccccceeEE
Confidence 46899999987 11222222256788999999987 455543 57899998865521 111000 000
Q ss_pred ecC---------CcceeeEEeeCCCCcEEEEEeCCCeEE-----------------------------------EEECCC
Q 014472 224 KVH---------EGVVEDVAWHLRHEYLFGSVGDDQYLL-----------------------------------IWDLRT 259 (424)
Q Consensus 224 ~~~---------~~~v~~i~~~~~~~~~~~s~~~dg~i~-----------------------------------i~d~~~ 259 (424)
.+- -+.-..+-|+|++++++...-++..|. |+|+.+
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~ 167 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLAS 167 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSS
T ss_pred cCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCC
Confidence 000 112356889999987654433333333 344443
Q ss_pred CCCCCCeeEe---cccCCCeeEEEecCCCCeEE-EEEeCCC---cEEEEECCCCCCcceeecCCCCCE---EEEEEc-CC
Q 014472 260 PSVSKPVQSV---VAHQSEVNCLAFNPFNEWIL-ATGSTDK---TVKLFDLRKISTALHTFDSHKEEV---FQVGWN-PK 328 (424)
Q Consensus 260 ~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l-~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~s-p~ 328 (424)
++.. .+... ..-...+..+.|.+++..++ .....+. .+.++|..+....+.........| ....|. ++
T Consensus 168 ~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 168 GKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp TCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 3321 11111 12234578888988887333 3333332 466777766322222222222322 355554 77
Q ss_pred CCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcce-EEeCCCCCcEEEEEeCCC--cEEEEecC
Q 014472 329 NETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD-FSWNPCEDWVISSVAEDN--ILQIWQMA 405 (424)
Q Consensus 329 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d~--~i~iw~~~ 405 (424)
+..+|.....+|.-+||-+.... .....+....-.|.. +.|++++..++.++..++ .-.||.+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~-------------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDG-------------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTS-------------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred CCEEEEEEEcCCCcEEEEEcccc-------------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 77777777788876666554432 112233333444644 678888886666766533 44455443
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.021 Score=53.06 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=93.8
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCC-------cEEEEEeCCCeEEEEECCCCCCCCCe
Q 014472 194 LLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
|.++.....++-.|++.++. +..+..+.. |+-+.+.|+.. .-| .|-.+..|+-||.|-... ..+
T Consensus 349 l~~~~~~~~l~klDIE~GKI------VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~-~kl 419 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKI------VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGK-NKL 419 (644)
T ss_pred eeCCCCcCcceeeeccccee------eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCc-cee
Confidence 44555566777788887743 444444544 66666666542 123 466788899999995442 122
Q ss_pred eEeccc----CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 014472 267 QSVVAH----QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRL 342 (424)
Q Consensus 267 ~~~~~~----~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i 342 (424)
...+.| .....|++-..+| .+|+|+.+|.|++||- ........+.+-..+|..+..+.+|.++|+|| +..+
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyL 494 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYL 494 (644)
T ss_pred eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEE
Confidence 222222 2345667666655 5999999999999997 33556667888899999999999999766655 5567
Q ss_pred EEeeCC
Q 014472 343 MVWDLS 348 (424)
Q Consensus 343 ~iwd~~ 348 (424)
.+-++.
T Consensus 495 lLi~t~ 500 (644)
T KOG2395|consen 495 LLIDTL 500 (644)
T ss_pred EEEEEe
Confidence 776654
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.55 E-value=0.033 Score=50.61 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=76.0
Q ss_pred CcceeeEEeeCCCCcEEEEEeC---CC-eEEEEECCCCCCCCCeeEeccc--CCCeeEEEecCCCCeEEEEEe----CCC
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGD---DQ-YLLIWDLRTPSVSKPVQSVVAH--QSEVNCLAFNPFNEWILATGS----TDK 296 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~---dg-~i~i~d~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~~g~----~dg 296 (424)
...+..+.|+|..+.+++-|-+ +. .-+||-+++... ....+..+ ...+..=-|.|+|..+...+. .+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 3456678899998888876643 22 136676654332 11222222 223444468999987665443 233
Q ss_pred cEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC----------------eEEEeeCCCCCcccCCCccC
Q 014472 297 TVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGR----------------RLMVWDLSRIDEEQTPEDAE 360 (424)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~~~ 360 (424)
.|.-+|+.+.. ...... .....-+-.++++. +++.=+.|. -|.++++..+..
T Consensus 265 ~i~~~d~~t~~-~~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-------- 332 (386)
T PF14583_consen 265 WIAGYDPDTGE-RRRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-------- 332 (386)
T ss_dssp EEEEE-TTT---EEEEEE--E-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTEE--------
T ss_pred EEEeeCCCCCC-ceEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCce--------
Confidence 57777887632 222121 12344566678885 454434332 344556554321
Q ss_pred CCCCeeeEE-------EcCCCC-CcceEEeCCCCCcEEEEEeCCCcEEEEec
Q 014472 361 DGPPELLFI-------HGGHTS-KISDFSWNPCEDWVISSVAEDNILQIWQM 404 (424)
Q Consensus 361 ~~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iw~~ 404 (424)
..+.. ..++.. .=-...|+||++++|.++...|...||-+
T Consensus 333 ----~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 333 ----RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ----eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 11111 122221 11357899999999999999998888754
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0036 Score=57.88 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=96.1
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCC-cc
Q 014472 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKIST-AL 310 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~g~~dg~i~iwd~~~~~~-~~ 310 (424)
+.+.++.++.....|+-.|+..++. +.....+.. |+-+.+.|++.. --+.|-.+..|.-||.|-.+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKI---VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKI---VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeeccccee---eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 3444565666667788889998775 666665555 777777776431 123577788999999996444 22
Q ss_pred eeecCC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014472 311 HTFDSH----KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 311 ~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
...+.| ...-.|.+-..+| ++++||.+|.|++||- .+. +....+.+-..+|..|..+.+|
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~-------------~AKTAlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR-------------RAKTALPGLGDAIKHVDVTADG 483 (644)
T ss_pred eeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhh-------------hhhhcccccCCceeeEEeeccC
Confidence 233332 2234555555555 6999999999999997 332 1122345667789999999999
Q ss_pred CcEEEEEeCCCcEEEEec
Q 014472 387 DWVISSVAEDNILQIWQM 404 (424)
Q Consensus 387 ~~~l~s~~~d~~i~iw~~ 404 (424)
+++|+|+ +..+.+-++
T Consensus 484 Kwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATC--KTYLLLIDT 499 (644)
T ss_pred cEEEEec--ccEEEEEEE
Confidence 9877664 455666554
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00066 Score=63.73 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=67.0
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEE-EEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF-QVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+..+.|+|.-+ ++|++..+|.|.+..+. .+.+.++..|+..++ +++|.|+|. +||.|-.||+|++-|+.++.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 45688899999887 89999999999999887 467788887787777 999999996 89999999999999999876
Q ss_pred cc
Q 014472 352 EE 353 (424)
Q Consensus 352 ~~ 353 (424)
..
T Consensus 96 ~l 97 (665)
T KOG4640|consen 96 RL 97 (665)
T ss_pred ce
Confidence 43
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.00082 Score=63.94 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=85.6
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
.|.--+++..++ +++.|+.-|.+++|+-...........+..+.+..+..+++. .++|+|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~--- 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKEL--- 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccC---
Confidence 333334455566 599999999999998765333333444445566677778877 589999999999999987732
Q ss_pred CCCccCCCCCeeeEE---EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 355 TPEDAEDGPPELLFI---HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
|+..... ...|...|++++|++++. .+.+|..-|.|..-.++.
T Consensus 110 --------p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 --------PRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred --------CCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 1222222 234678899999999999 699999999999998887
No 356
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.50 E-value=0.019 Score=56.36 Aligned_cols=237 Identities=11% Similarity=0.087 Sum_probs=122.0
Q ss_pred CcEEEEEecC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC------CcEEE
Q 014472 138 PFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD------AQICL 205 (424)
Q Consensus 138 ~~~latg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~v 205 (424)
..+++.|+.. ..+..||..+ ..+.....+. +...-.+++... + .+.++|+.| .++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~--------~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~ 353 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKT--------NEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVER 353 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCc--------CcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEE
Confidence 3477777766 3677788776 2233333333 222234455543 3 378888888 34677
Q ss_pred EeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCe-----EEEEECCCCCCCCCeeEecccCCCeeEEE
Q 014472 206 WDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQY-----LLIWDLRTPSVSKPVQSVVAHQSEVNCLA 280 (424)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 280 (424)
||....+- ..+..+.......... .-+..++|+||.||. +-.||.++.+- ..+..+.. .....+
T Consensus 354 YD~~~~~W----~~~a~M~~~R~~~~v~---~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~---~r~~~g 422 (571)
T KOG4441|consen 354 YDPRTNQW----TPVAPMNTKRSDFGVA---VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLT---RRSGHG 422 (571)
T ss_pred ecCCCCce----eccCCccCccccceeE---EECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCc---ceeeeE
Confidence 88776542 2222222222222112 224568899998875 77788887652 23322222 222222
Q ss_pred ecCCCCeEEEEEeCCC------cEEEEECCCCC-CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe-----EEEeeCC
Q 014472 281 FNPFNEWILATGSTDK------TVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR-----LMVWDLS 348 (424)
Q Consensus 281 ~~~~~~~~l~~g~~dg------~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-----i~iwd~~ 348 (424)
...-+..+.++||.++ ++..||..+.. ..+..+........ ++.- ++ .+++.|+.|+. |..||..
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCC
Confidence 2222445788888654 56778877521 11222221122222 2222 23 57888887763 5667766
Q ss_pred CCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-----cEEEEecCCCCCCCCCC
Q 014472 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-----ILQIWQMAENIYHDEDD 414 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~ 414 (424)
+..- ..+.........+..+.+ ++. +.+.|+.|| +|..||+.++.+....+
T Consensus 500 ~~~W------------~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 500 TNQW------------TMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred CCce------------eEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 5321 222111212222222222 233 788888776 57788888887776555
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.01 Score=43.44 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=65.7
Q ss_pred eeEEEecC---CCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEE
Q 014472 128 VNRARYMP---QNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 128 v~~i~~~p---~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
|+++++.. ++.+-|++|+.|..|++|+-.. .+..+. -...|++|.-... ..|+.+..+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~~~Ei~-e~~~v~~L~~~~~--~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------IVAEIT-ETDKVTSLCSLGG--GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------EEEEEe-cccceEEEEEcCC--CEEEEEecCCEEE
Confidence 55666654 5667899999999999999665 122333 3456778877654 3699999999999
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeC---CCCcEEEEEeCCCeEE
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---RHEYLFGSVGDDQYLL 253 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~s~~~dg~i~ 253 (424)
+|+-... ... .+ ....+.++.+.. +|..-|++|-.+|.|-
T Consensus 67 vY~~~~R--lWR------iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQR--LWR------IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcce--eee------ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9976322 111 11 123455655543 3444566888888764
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00056 Score=39.27 Aligned_cols=38 Identities=26% Similarity=0.615 Sum_probs=32.1
Q ss_pred eeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEe
Q 014472 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403 (424)
Q Consensus 365 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~ 403 (424)
.....+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34555667888999999999987 789999999999996
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.29 E-value=0.00064 Score=39.04 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=31.8
Q ss_pred CcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEe
Q 014472 170 PDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWD 207 (424)
Q Consensus 170 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 207 (424)
+...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 3456678889999999999775 799999999999996
No 360
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.0009 Score=55.08 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=84.6
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEE
Q 014472 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVF 321 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 321 (424)
++...+.+|.|+-++++..+.. ......+...-..+.+ +. -+++|+.+|.|.+|...-.+.....+..-...|.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hhccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 3445678888888888764421 1111112222112222 33 4889999999999988743332222222233333
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEE--eCCCc
Q 014472 322 QVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSV--AEDNI 398 (424)
Q Consensus 322 ~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~--~~d~~ 398 (424)
+..-.-+...+..+++.||.|+.|++... +.+.....|. ..+..+..+..++ +++.+ |.|..
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--------------k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPN--------------KVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRV 170 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccC--------------ceeeeeccccCCCcceeEEecCCc-eEEeeccccchh
Confidence 33322222348889999999999998754 3344444555 4555555555566 56666 77888
Q ss_pred EEEEecCCC
Q 014472 399 LQIWQMAEN 407 (424)
Q Consensus 399 i~iw~~~~~ 407 (424)
++.|++..-
T Consensus 171 ~k~W~ve~~ 179 (238)
T KOG2444|consen 171 LKKWNVEKI 179 (238)
T ss_pred hhhcchhhh
Confidence 888887653
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.084 Score=45.66 Aligned_cols=178 Identities=15% Similarity=0.239 Sum_probs=105.8
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
+-...|.++.|+|+...++++....-.|.=-+.+. .......+.+. ...-+|.|...+. +.++--.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---------dlirtiPL~g~-~DpE~Ieyig~n~-fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---------DLIRTIPLTGF-SDPETIEYIGGNQ-FVIVDERDRA 151 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC---------ceEEEeccccc-CChhHeEEecCCE-EEEEehhcce
Confidence 34455999999999988888766544443333332 22222233332 2345677776554 5555556888
Q ss_pred EEEEeCCCCCCCCcccc----eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc------
Q 014472 203 ICLWDINAAPKNKSLEA----MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH------ 272 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 272 (424)
+.++.+........... +............++|.|.+..++ .+-+-.-+.||.+......-.......+
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 98888876533222111 111222255678999999988776 5556566777766543211111111111
Q ss_pred -CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec
Q 014472 273 -QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 273 -~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 314 (424)
-..|.++.|++...++|+-+..++.+.-.|... .++..+.
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G--~~~~~ls 271 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG--EVIELLS 271 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCC--CeeeeEE
Confidence 235778899988888899998899888888773 4444443
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.25 E-value=0.023 Score=41.64 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=63.8
Q ss_pred eeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec
Q 014472 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 235 ~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 314 (424)
|..++..-|++|+.|..|++|+-.. .+..+.. ...|++++-...+ .|+.+..+|+|.+|+-.. .+-..+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~---RlWRiK 78 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDE-----IVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ---RLWRIK 78 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCc-----EEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcc---eeeeec
Confidence 3445556777999999999997653 2334333 5678888777654 489999999999998542 223333
Q ss_pred CCCCCEEEEEEcC---CCCcEEEEEeCCCeEE
Q 014472 315 SHKEEVFQVGWNP---KNETILASCCLGRRLM 343 (424)
Q Consensus 315 ~~~~~v~~~~~sp---~~~~~l~s~~~dg~i~ 343 (424)
. +..++++++.. +|..-|++|-.+|.|-
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 33466666543 3333578888888764
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.048 Score=46.80 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=72.8
Q ss_pred cceeeEEeeCCCCcEEEEEeCCCe-EEEEECCCCCCCCCeeEecccCC--CeeEEEecCCCCeEEEEEe----CCCcEEE
Q 014472 228 GVVEDVAWHLRHEYLFGSVGDDQY-LLIWDLRTPSVSKPVQSVVAHQS--EVNCLAFNPFNEWILATGS----TDKTVKL 300 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~~g~----~dg~i~i 300 (424)
.....|+++|..+.-++.+-.-|+ ..++|...... +..+...+. ---.-.|+|+|.++.||-. .-|.|-|
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~---pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE---PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcC---cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence 344578888888777777766665 56889887664 222221111 1122468999996555532 1378999
Q ss_pred EECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEE
Q 014472 301 FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 336 (424)
||.+..-..+..+..|.-....+.|.++|+.++++.
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 999986778888999998999999999998544443
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.20 E-value=0.0015 Score=39.84 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=31.3
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCC
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~ 157 (424)
+........|.+++|+|... +||.|+.+|.|.||.++-
T Consensus 5 ~~~k~l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 5 LGEKNLPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred ecccCCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence 33344556799999999886 999999999999999853
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.2 Score=47.25 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=33.9
Q ss_pred cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 202 QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 202 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.|.||+.... .+..+.-..+.|.++.|+.+.. ++ +...||.+++||+..
T Consensus 62 ~I~iys~sG~-------ll~~i~w~~~~iv~~~wt~~e~-Lv-vV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGK-------LLSSIPWDSGRIVGMGWTDDEE-LV-VVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCC-------EeEEEEECCCCEEEEEECCCCe-EE-EEEcCCEEEEEeCCC
Confidence 4888887543 2222222237899999988653 54 667999999999964
No 366
>PHA02713 hypothetical protein; Provisional
Probab=97.10 E-value=0.05 Score=53.46 Aligned_cols=150 Identities=11% Similarity=0.142 Sum_probs=73.8
Q ss_pred CcEEEEEeCCC-----eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC------------------
Q 014472 240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------------------ 296 (424)
Q Consensus 240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg------------------ 296 (424)
..+++.||.++ .+..||..+.. +..+..+.........+.. +..+.+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 46888888754 47889988754 2222222111112222232 334777887653
Q ss_pred -----cEEEEECCCCC-CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC------eEEEeeCCC-CCcccCCCccCCCC
Q 014472 297 -----TVKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLGR------RLMVWDLSR-IDEEQTPEDAEDGP 363 (424)
Q Consensus 297 -----~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg------~i~iwd~~~-~~~~~~~~~~~~~~ 363 (424)
.+..||..+.. ..+..+.........+.+ ++ .+.+.|+.++ .+..||..+ ..-
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W----------- 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGW----------- 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCe-----------
Confidence 46778876521 111111111111111222 34 4666676542 356677765 221
Q ss_pred CeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC--cEEEEecCCCCCCC
Q 014472 364 PELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN--ILQIWQMAENIYHD 411 (424)
Q Consensus 364 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~ 411 (424)
..+..+.........+.+ +++ +.+.||.++ .+..||+.++.+..
T Consensus 494 -~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 494 -ELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred -eEccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCcccccccc
Confidence 111122211222222233 355 889999888 77788888876653
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.16 Score=45.43 Aligned_cols=204 Identities=11% Similarity=0.073 Sum_probs=111.9
Q ss_pred eEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC
Q 014472 183 GLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
+-.|.+....++.+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..++ ++ . .-+.+++..++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------~~~~-~p~~~~~~~~~d~~g~Lv-~~-~-~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-------RVFP-SPGGFSSGALIDAGGRLI-AC-E-HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce-------EEEE-CCCCcccceeecCCCeEE-EE-c-cccEEEeccCCce
Confidence 4457776665566666678898998875522 2222 333444444444444444 32 3 3366677654432
Q ss_pred CCCeeEec-c-cCCCeeEEEecCCCCeEEEEEe-----CC---CcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcE
Q 014472 263 SKPVQSVV-A-HQSEVNCLAFNPFNEWILATGS-----TD---KTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 263 ~~~~~~~~-~-~~~~v~~i~~~~~~~~~l~~g~-----~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 332 (424)
...+.... . .....+.+...|+|...+-+.+ .. ..-.+|-+...+..++.+..+-..-+.++|||+++.+
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEE
Confidence 11111111 1 1245678888999874332222 11 0113444432244555555555566889999999877
Q ss_pred EEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCC-cEEEEecC
Q 014472 333 LASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDN-ILQIWQMA 405 (424)
Q Consensus 333 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iw~~~ 405 (424)
+++=+..+.|.-|++....- .... ......+....+..-.++...+|. +.+++..+| .|.+|+..
T Consensus 178 y~aDT~~~~i~r~~~d~~~g------~~~~-~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 178 YVADTPANRIHRYDLDPATG------PIGG-RRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEEeCCCCeEEEEecCcccC------ccCC-cceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC
Confidence 77777778888888763100 0011 122223333455566788888888 454444443 89999988
No 368
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.03 E-value=0.3 Score=45.96 Aligned_cols=227 Identities=7% Similarity=-0.016 Sum_probs=115.8
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeee-EEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYG-LSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
.+..++.+|.++.+|..+ .+...+.... ..+.+ .... +. .++.+..+|.+..+|..+++......
T Consensus 122 ~v~v~~~~g~l~ald~~t----------G~~~W~~~~~-~~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 122 KVYIGSEKGQVYALNAED----------GEVAWQTKVA-GEALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EEEEEcCCCEEEEEECCC----------CCCcccccCC-CceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeec
Confidence 455667889999999876 2222222211 11111 1111 23 57778888999999998886543322
Q ss_pred cee---eeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc-CC---CeeEEEecC--CCCeEE
Q 014472 219 AMQ---IFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH-QS---EVNCLAFNP--FNEWIL 289 (424)
Q Consensus 219 ~~~---~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~---~v~~i~~~~--~~~~~l 289 (424)
... ...+...++ .. +..+ +.++.+|.+..+|..+++........... .. ....+..+| .+. .+
T Consensus 188 ~~~~~~~~~~~~sP~----v~--~~~v-~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~v 259 (394)
T PRK11138 188 LDVPSLTLRGESAPA----TA--FGGA-IVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VV 259 (394)
T ss_pred CCCCcccccCCCCCE----EE--CCEE-EEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EE
Confidence 100 000111111 11 2234 36678899999998887642211110000 00 001111112 134 35
Q ss_pred EEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEE
Q 014472 290 ATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFI 369 (424)
Q Consensus 290 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 369 (424)
+.++.+|.+..+|+.+ ++.+-.... .....+.. .+. .++.++.+|.+..+|..++...-...
T Consensus 260 y~~~~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~------------ 321 (394)
T PRK11138 260 YALAYNGNLVALDLRS-GQIVWKREY--GSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQS------------ 321 (394)
T ss_pred EEEEcCCeEEEEECCC-CCEEEeecC--CCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEccc------------
Confidence 5677889999999987 444433321 11112222 233 46677789999999998764211000
Q ss_pred EcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 370 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
...+ ....+.... +. .|+.++.+|.|.+.|..++.+.
T Consensus 322 ~~~~-~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 322 DLLH-RLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred ccCC-CcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEE
Confidence 0000 011111221 33 3666788899999998887654
No 369
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.023 Score=51.79 Aligned_cols=159 Identities=15% Similarity=0.203 Sum_probs=103.5
Q ss_pred eeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC---
Q 014472 230 VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI--- 306 (424)
Q Consensus 230 v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~--- 306 (424)
-+.+-|...++.+||+- .|.+.-|-++....-.++..-....++|.+|.|+++++ ++|+--.+.+|.+++....
T Consensus 25 sngvFfDDaNkqlfavr--SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVR--SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ccceeeccCcceEEEEe--cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh
Confidence 34556665566666543 45566666655443333433334567999999999998 7999999999999998431
Q ss_pred CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014472 307 STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 307 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
.....+.+..+..|....|+.+.+ +|-.+..| +-+|...... ..++....|+..|+-..|+++.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pek-------------rslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEK-------------RSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhh-------------hhhhhhhhcccCccEEEEcccc
Confidence 122333444556799999998764 66666555 7777765432 2344445677789999999988
Q ss_pred CcEEEEEe-CCCcEEEEecCCC
Q 014472 387 DWVISSVA-EDNILQIWQMAEN 407 (424)
Q Consensus 387 ~~~l~s~~-~d~~i~iw~~~~~ 407 (424)
+..|.+.+ ..+.+.=+.+..+
T Consensus 166 ~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 166 AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ceEeeeccccccccccEEEeec
Confidence 75555555 5555555555554
No 370
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.02 E-value=0.065 Score=45.34 Aligned_cols=127 Identities=11% Similarity=-0.053 Sum_probs=78.3
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCe
Q 014472 187 SKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 187 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
.++.+.+++.|+..+.+.--|..++....... -..+|.+-+.- -++ .++.|+..|.+++.+.++++. +
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-------lg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~---~ 86 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-------LGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ---I 86 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-------hCceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh---e
Confidence 34445578888888888888887774321110 12333333322 244 466899999999999999864 3
Q ss_pred eEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 267 QSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 267 ~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
..+..-..--......+++. ++..|+.|++.+..|.++ ..++...+-..+.-.+-+..|
T Consensus 87 w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred eeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecC
Confidence 33322222112233456676 899999999999999998 566666554333333344445
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.98 E-value=0.22 Score=44.59 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=92.0
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcce-eeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCe
Q 014472 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
|.++.-|.+-|.||.+.-..+....+.. .+....+..-..++ ..-++...+..+ +-.+..|.|+-.|+..... +..
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~-~F~Sy~G~v~~~dlsg~~~-~~~ 220 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRL-YFVSYEGNVYSADLSGDSA-KFG 220 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEE-EEEBTTSEEEEEEETTSSE-EEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeE-EEEecCCEEEEEeccCCcc-ccc
Confidence 4454568899999999999998554322 11112222222222 223344443333 2467889999888876542 112
Q ss_pred eEecc----------cCCCeeEEEecCCCCeEEEEEe--C-----CC--cEEEEECCCCCCcceeecCCCCCEEEEEEcC
Q 014472 267 QSVVA----------HQSEVNCLAFNPFNEWILATGS--T-----DK--TVKLFDLRKISTALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 267 ~~~~~----------~~~~v~~i~~~~~~~~~l~~g~--~-----dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 327 (424)
..+.. -.+.-.-+++++..+.+++.-. . |+ .|-+||+.+ ++.+..+.. ..++.++..+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsq 298 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQ 298 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEES
T ss_pred CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-CCccceEEEcc
Confidence 22211 1233455777776654444322 1 22 477778887 677777775 45788999998
Q ss_pred CCCcEEEEE-eCCCeEEEeeCCCCCc
Q 014472 328 KNETILASC-CLGRRLMVWDLSRIDE 352 (424)
Q Consensus 328 ~~~~~l~s~-~~dg~i~iwd~~~~~~ 352 (424)
+..-+|++. ..++.+.+||..+++.
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 877677655 4578999999998743
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.22 Score=42.94 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=121.0
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCe-EEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeC-
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAE-VYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSD- 199 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~- 199 (424)
+.-+..-..|+|+|..+.-++.+-.-|+ ..++|.+....... ........+.+|. .|+|+|. +|...-+
T Consensus 64 ~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~--~~s~~~RHfyGHG------vfs~dG~-~LYATEnd 134 (366)
T COG3490 64 TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVT--LVSQEGRHFYGHG------VFSPDGR-LLYATEND 134 (366)
T ss_pred eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEE--EecccCceeeccc------ccCCCCc-EEEeecCC
Confidence 3445555678999988777777776664 56788876221110 0011122344553 5899888 5655433
Q ss_pred ----CCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-----------------CCCeEEEEECC
Q 014472 200 ----DAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-----------------DDQYLLIWDLR 258 (424)
Q Consensus 200 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-----------------~dg~i~i~d~~ 258 (424)
-|.|-|||.+.+ +..+..+..|.-....+.|.+||+.++++.+ ..-++.+.|..
T Consensus 135 fd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 135 FDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred CCCCCceEEEEecccc-----cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 378999999743 3445667778888889999999986654433 01123334434
Q ss_pred CCCCCCCeeEec--ccCCCeeEEEecCCCCeEEEEEeCCCc----EEEEECCCCCCcceeecCC-------CCCEEEEEE
Q 014472 259 TPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKT----VKLFDLRKISTALHTFDSH-------KEEVFQVGW 325 (424)
Q Consensus 259 ~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~g~~dg~----i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~ 325 (424)
++.... ..++. .+.-.|..++..++|. +++.+-..|. --+.-....++++.-+... ...|-+++.
T Consensus 210 tG~lie-kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~ 287 (366)
T COG3490 210 TGNLIE-KHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAA 287 (366)
T ss_pred ccchhh-hccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheee
Confidence 443211 11222 2345677888888776 3333322221 0011111113344333322 245778888
Q ss_pred cCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 326 NPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+.+...+.+|+=..+...+||..++.
T Consensus 288 n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 288 NRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred cccCCeEEEecCCCCeEEEEEcCCCc
Confidence 87766555565566778899999874
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.93 E-value=0.23 Score=48.95 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=98.7
Q ss_pred CceeEEEecCCCCcEEEEEe-----cCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEe
Q 014472 126 GEVNRARYMPQNPFLIATKT-----VSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~-----~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 198 (424)
..+...+++|++..+.++.. .|+ .|.+++... .......+. ....-.|+|++. .|.+.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------~~~~lt~g~--~~t~PsWspDG~-~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------VAVQVLEGH--SLTRPSWSLDAD-AVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------cceeeecCC--CCCCceECCCCC-ceEEEe
Confidence 46778899999986655542 233 455555432 111112222 377889999877 354443
Q ss_pred CC------------CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE---EECCCCCC-
Q 014472 199 DD------------AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI---WDLRTPSV- 262 (424)
Q Consensus 199 ~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i---~d~~~~~~- 262 (424)
.. +.+.+.++..+.. .. ...+.|..+.|+|+|..+.+.. +|.|.+ -....+..
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~-------~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAV-------AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchh-------hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCcee
Confidence 22 2333334432211 00 2356799999999998776544 477777 33222220
Q ss_pred CCCeeEe-cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCC
Q 014472 263 SKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 263 ~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
......+ ..-...+.++.|.+++. ++ ++..++...+|.+.-.+.....+.. ...++..++-++. . ++....+
T Consensus 485 l~~~~~l~~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~ 559 (591)
T PRK13616 485 LTNPREVGPGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDAR 559 (591)
T ss_pred ecccEEeecccCCccccceEecCCE-EE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCC
Confidence 1111112 22333468899999886 44 5555554455554432322222222 2557777877763 2 4455666
Q ss_pred CeE
Q 014472 340 RRL 342 (424)
Q Consensus 340 g~i 342 (424)
|.+
T Consensus 560 g~~ 562 (591)
T PRK13616 560 AVL 562 (591)
T ss_pred ceE
Confidence 633
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.91 E-value=0.32 Score=44.29 Aligned_cols=169 Identities=14% Similarity=0.159 Sum_probs=96.1
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCCcEEEecCCCCeeeEEecCCCC
Q 014472 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGA-CSPDLRLRGHSTEGYGLSWSKFKE 191 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~ 191 (424)
..+++.+.....+++|++++-. ++ .++++ . .+.|.+|++... . ......+. ....+.++... ++
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~-g~~l~v~~l~~~--------~~l~~~~~~~-~~~~i~sl~~~--~~ 140 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-V-GNKLYVYDLDNS--------KTLLKKAFYD-SPFYITSLSVF--KN 140 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE-TT-EEEEE-E-TTEEEEEEEETT--------SSEEEEEEE--BSSSEEEEEEE--TT
T ss_pred ceEEEEEEEEeecCcceEhhhh-CC-EEEEe-e-cCEEEEEEccCc--------ccchhhheec-ceEEEEEEecc--cc
Confidence 3478888888899999999987 23 34443 3 479999999872 2 12222222 22356666654 44
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCC---C-CC-Ce
Q 014472 192 GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPS---V-SK-PV 266 (424)
Q Consensus 192 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~---~-~~-~~ 266 (424)
+++.|.....+.++..+... ..+..+. -......++++.+-+++. .++++..+|.+.++...... . .. .+
T Consensus 141 -~I~vgD~~~sv~~~~~~~~~--~~l~~va-~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 141 -YILVGDAMKSVSLLRYDEEN--NKLILVA-RDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp -EEEEEESSSSEEEEEEETTT--E-EEEEE-EESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred -EEEEEEcccCEEEEEEEccC--CEEEEEE-ecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 79999988889888654421 1222222 122355688899986665 66689999999999876311 0 11 12
Q ss_pred eEe--cccCCCeeEE---EecCC--CC-----eEEEEEeCCCcEEEE
Q 014472 267 QSV--VAHQSEVNCL---AFNPF--NE-----WILATGSTDKTVKLF 301 (424)
Q Consensus 267 ~~~--~~~~~~v~~i---~~~~~--~~-----~~l~~g~~dg~i~iw 301 (424)
... ......|+++ ++.|. +. ..++.++.+|.|.+.
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 111 1234567777 55552 22 247777889988844
No 375
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.15 Score=43.26 Aligned_cols=110 Identities=6% Similarity=0.048 Sum_probs=76.1
Q ss_pred eeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec
Q 014472 235 WHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 235 ~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 314 (424)
..++.+.+++.|+..+.+.-.|..+++.. .. ..-...+.+-+.- -|+ +++.|...|.+++.+..+ +..+..+.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~--We--~ilg~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~t-Gs~~w~f~ 90 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLI--WE--AILGVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKT-GSQIWNFV 90 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEE--ee--hhhCceeeeeeEE-ECC-EEEEEEccCcEEEEEecc-hhheeeee
Confidence 34556677788999999999999887741 11 1223344433332 255 589999999999999998 65666665
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
....--.+....+++. ++..++.|+.....|.++..+
T Consensus 91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce
Confidence 4333333455667774 899999999999999987643
No 376
>PHA02713 hypothetical protein; Provisional
Probab=96.86 E-value=0.069 Score=52.51 Aligned_cols=144 Identities=8% Similarity=0.089 Sum_probs=72.5
Q ss_pred eEEEEeCCC-----cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC-----------------
Q 014472 193 HLLSGSDDA-----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ----------------- 250 (424)
Q Consensus 193 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg----------------- 250 (424)
+.+.|+.++ .+..||..+..- ..+..+.........+.. +..+++.||.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccc
Confidence 566777654 477888876422 111111111111112222 345777787652
Q ss_pred ------eEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC------cEEEEECCC--CCCcceeecCC
Q 014472 251 ------YLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK------TVKLFDLRK--ISTALHTFDSH 316 (424)
Q Consensus 251 ------~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg------~i~iwd~~~--~~~~~~~~~~~ 316 (424)
.+..||.++..- ..+..+.........+.+. + .+.+.|+.++ .+..||..+ ....+..+...
T Consensus 427 ~~~~~~~ve~YDP~td~W-~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW-ETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred cccccceEEEECCCCCeE-eecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 477888887652 2222221111122222222 4 4777787642 467898875 22333344333
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCC--eEEEeeCCCC
Q 014472 317 KEEVFQVGWNPKNETILASCCLGR--RLMVWDLSRI 350 (424)
Q Consensus 317 ~~~v~~~~~sp~~~~~l~s~~~dg--~i~iwd~~~~ 350 (424)
......+.. ++ .+.++|+.+| .+..||..+.
T Consensus 503 r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 503 LSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccceeEEE--CC-EEEEEeeecceeehhhcCcccc
Confidence 333333333 34 5888999888 5666776654
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.016 Score=58.26 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=68.6
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
.++.|+..|.+-..|+...- .+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++. ++.+..|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~---l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI---LKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc---eeeeeec
Confidence 58888889999998886541 11122223467999999999986 566889999999999998664 5555555
Q ss_pred CCCeeE---EEecCCCCeEEEEEeCCCcEEEEEC
Q 014472 273 QSEVNC---LAFNPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 273 ~~~v~~---i~~~~~~~~~l~~g~~dg~i~iwd~ 303 (424)
..+.+. +.+..++. .+.++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 554444 34455555 5778877776 5554
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.71 E-value=0.077 Score=50.28 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=92.8
Q ss_pred CCeeeEEecCCCCceEEEEe--CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCC----CCcEEEEEeCCCeE
Q 014472 179 TEGYGLSWSKFKEGHLLSGS--DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR----HEYLFGSVGDDQYL 252 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~s~~~dg~i 252 (424)
.++.+++|.. |+..+++.- .+|.+++=|- ..+ +.-..|..+.|.|- .+.++ +......|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds---------~vi----GqFEhV~GlsW~P~~~~~~paLL-AVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS---------KVI----GQFEHVHGLSWAPPCTADTPALL-AVQHKKHV 84 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCc---------cEe----eccceeeeeeecCcccCCCCceE-EEeccceE
Confidence 4688999975 665666643 2333332221 111 23346889999885 34566 55678899
Q ss_pred EEEECCCC--CCCCCeeEecc-cCC----CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEE
Q 014472 253 LIWDLRTP--SVSKPVQSVVA-HQS----EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGW 325 (424)
Q Consensus 253 ~i~d~~~~--~~~~~~~~~~~-~~~----~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 325 (424)
.||-+... +..+.+..... ... -...+.|+|... +|++-.....-.+++++.....++.--...+.|.|.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 99988622 11122221111 111 224567999887 56665555444567777644444433345789999999
Q ss_pred cCCCCcEEEEEeCCCeEEEeeCC
Q 014472 326 NPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 326 sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
.++|.+++++.+..=.-.|||-.
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCc
Confidence 99998877776665556788754
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.69 E-value=0.49 Score=46.64 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=97.4
Q ss_pred ccCCceeEEEecCCCCcEEEEEecC------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVS------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
.++..-.+++... + .+.++|+.+ .++..||... ..+.....+....... +++-. +..+.++
T Consensus 320 ~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~--------~~W~~~a~M~~~R~~~-~v~~l--~g~iYav 386 (571)
T KOG4441|consen 320 PSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRT--------NQWTPVAPMNTKRSDF-GVAVL--DGKLYAV 386 (571)
T ss_pred CcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCC--------CceeccCCccCccccc-eeEEE--CCEEEEE
Confidence 3444455566664 3 488899988 3667777766 3344433333222222 12211 2336788
Q ss_pred EeCCCc-----EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC------eEEEEECCCCCCCCC
Q 014472 197 GSDDAQ-----ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ------YLLIWDLRTPSVSKP 265 (424)
Q Consensus 197 ~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg------~i~i~d~~~~~~~~~ 265 (424)
|+.||. |-.||..+..- ........ .........-+..++++||.++ ++..||..+..- ..
T Consensus 387 GG~dg~~~l~svE~YDp~~~~W----~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-~~ 458 (571)
T KOG4441|consen 387 GGFDGEKSLNSVECYDPVTNKW----TPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-TL 458 (571)
T ss_pred eccccccccccEEEecCCCCcc----cccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-ee
Confidence 888864 66777766532 22221111 1122222222356888888554 467888887652 22
Q ss_pred eeEecccCCCeeEEEecCCCCeEEEEEeCCCc-----EEEEECCCCC-CcceeecCCCCCEEEEEEcCCCCcEEEEEeCC
Q 014472 266 VQSVVAHQSEVNCLAFNPFNEWILATGSTDKT-----VKLFDLRKIS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG 339 (424)
Q Consensus 266 ~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d 339 (424)
+..+..-........+ +..+.+.||.|+. |..||.++.. ..+..+......+..+.+ +..+.+.|+.|
T Consensus 459 ~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~ 532 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFD 532 (571)
T ss_pred cCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEeccc
Confidence 3332222222222222 3458899998873 6778887621 112112222222222333 33577788877
Q ss_pred Ce
Q 014472 340 RR 341 (424)
Q Consensus 340 g~ 341 (424)
|.
T Consensus 533 ~~ 534 (571)
T KOG4441|consen 533 GN 534 (571)
T ss_pred Cc
Confidence 64
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.011 Score=59.29 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=70.5
Q ss_pred EEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeee
Q 014472 288 ILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELL 367 (424)
Q Consensus 288 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 367 (424)
.++.|+..|.+-..|.+..-.+...-..-.++|++++|+.+|. +++.|-.+|.|.+||+...+. .+.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~-----------l~~i 168 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKI-----------LKVI 168 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcc-----------eeee
Confidence 5889999999999998863223333333467999999999996 788999999999999987532 1223
Q ss_pred EEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 368 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
..+......|..+.+..++. .+.++...|. +|++.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 33322233344555666666 6777777775 66654
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.52 E-value=0.51 Score=46.59 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=82.0
Q ss_pred CCeeeEEecCCCCceEEEEe-----CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeC-----
Q 014472 179 TEGYGLSWSKFKEGHLLSGS-----DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGD----- 248 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~----- 248 (424)
..+.+.+.+|++....++.. .|+.-.||-...+... ..+ .. ....+.-.|+|++..+. +...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~l--t~--g~~~t~PsWspDG~~lw-~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQV--LE--GHSLTRPSWSLDADAVW-VVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eee--ec--CCCCCCceECCCCCceE-EEecCcceE
Confidence 45788999999985444431 2444344433222111 111 12 22377789999976554 3321
Q ss_pred -------CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEE---EECCCCCC-cc---eee-
Q 014472 249 -------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL---FDLRKIST-AL---HTF- 313 (424)
Q Consensus 249 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~i---wd~~~~~~-~~---~~~- 313 (424)
.+.+.+.++..+.. .. .....|..+.|+|+|.+++++. +|.|.+ -.... +. .+ ..+
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~----~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~-G~~~l~~~~~l~ 492 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAV----AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTED-GQYALTNPREVG 492 (591)
T ss_pred EEeccCCCceEEEEeccCchh----hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCC-CceeecccEEee
Confidence 23344444444332 11 2356799999999999755554 477776 33222 22 11 112
Q ss_pred cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 314 DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 314 ~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..-...+.++.|.+++. ++ .+..++...+|.+.-
T Consensus 493 ~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred cccCCccccceEecCCE-EE-EEecCCCCceEEEec
Confidence 22233468899999986 44 445555555666554
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.46 E-value=0.78 Score=42.85 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=49.6
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEc---CC-----------------CCc
Q 014472 272 HQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWN---PK-----------------NET 331 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s---p~-----------------~~~ 331 (424)
....+.+|+.+|.+. +.|+...=|.|.++|+.+ ...++.+++-...- +.|. .. ...
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEcCCCcEEEEECCC-ChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEE
Confidence 345588999999976 677777779999999998 67777776544321 1111 00 112
Q ss_pred EEEEEeCCCeEEEeeCCCCC
Q 014472 332 ILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~~~ 351 (424)
+++-+-.-|.|.||.++.+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEeccCCeEEEEecCCCC
Confidence 33344557788888888753
No 383
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.40 E-value=0.2 Score=47.60 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=90.3
Q ss_pred eccCCceeEEEecCC----CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCC---C--CeeeEEecCCCCc
Q 014472 122 INHDGEVNRARYMPQ----NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHS---T--EGYGLSWSKFKEG 192 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~----~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~--~v~~l~~~~~~~~ 192 (424)
++.-..|..+.|.|- -+.+||+- ....|.||.+.....+. .+....-..+- - -..++.|+|...
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~-----~K~l~sQtcEi~e~~pvLpQGCVWHPk~~- 125 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTER-----NKLLMSQTCEIREPFPVLPQGCVWHPKKA- 125 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCcccc-----ccceeeeeeeccCCcccCCCcccccCCCc-
Confidence 455567889999984 45678874 46799999997532221 12122111111 1 235788999776
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCC-CeeEecc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSK-PVQSVVA 271 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~-~~~~~~~ 271 (424)
.|++=.....-.++++..... .....+ ...+.|.|.+|.++|+.++++.+..=.-++||-.+..... .......
T Consensus 126 iL~VLT~~dvSV~~sV~~d~s----rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFd 200 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSS----RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFD 200 (671)
T ss_pred eEEEEecCceeEeeeeeeCCc----eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeec
Confidence 455444333334566654422 111222 3567899999999999998887776677899876532110 1111122
Q ss_pred cCCCeeEEEecCCCCeEEEEEe
Q 014472 272 HQSEVNCLAFNPFNEWILATGS 293 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~ 293 (424)
-.+.|.+|.-.-+. .+|.+.
T Consensus 201 v~~~Icsi~AT~ds--qVAvaT 220 (671)
T PF15390_consen 201 VGGYICSIEATVDS--QVAVAT 220 (671)
T ss_pred CCCceEEEEEeccc--eEEEEe
Confidence 34566666554333 344444
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.39 E-value=0.64 Score=41.14 Aligned_cols=230 Identities=15% Similarity=0.160 Sum_probs=118.3
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccc
Q 014472 139 FLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLE 218 (424)
Q Consensus 139 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 218 (424)
..|+.|+.+| +++++.... ..... .. +...|..+...+.-+ .|++- .|+.+.++++..-.......
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~---------~~~~~-i~-~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDP---------SKPTR-IL-KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CEEEEEECCC-EEEEEecCC---------cccee-Ee-ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccc
Confidence 3688888888 999998320 11121 11 233499999988665 34433 35999999987654322110
Q ss_pred cee--------eeecCCcceeeEE--eeCCCCcEEEEEeCCCeEEEEECCCCCC-C-CCeeEecccCCCeeEEEecCCCC
Q 014472 219 AMQ--------IFKVHEGVVEDVA--WHLRHEYLFGSVGDDQYLLIWDLRTPSV-S-KPVQSVVAHQSEVNCLAFNPFNE 286 (424)
Q Consensus 219 ~~~--------~~~~~~~~v~~i~--~~~~~~~~~~s~~~dg~i~i~d~~~~~~-~-~~~~~~~~~~~~v~~i~~~~~~~ 286 (424)
... ........+..++ -...+...+ +......|.+|....... . +....+. -...+.+++|. ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L-~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRL-CVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN 149 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEE-EEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC
Confidence 000 0011223344444 112333334 344556899988876422 1 2334433 35789999998 33
Q ss_pred eEEEEEeCCCcEEEEECCCCCCcceeecC------------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCccc
Q 014472 287 WILATGSTDKTVKLFDLRKISTALHTFDS------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQ 354 (424)
Q Consensus 287 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~ 354 (424)
.++.|.. ....+.|+.+ +.....+.. ...++..+... +++ +|++. |..-.+.|... ...+
T Consensus 150 -~i~v~~~-~~f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~~G-~~~r 221 (275)
T PF00780_consen 150 -KICVGTS-KGFYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNKNG-EPSR 221 (275)
T ss_pred -EEEEEeC-CceEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcCCC-CcCc
Confidence 4666664 4588899985 333222211 11233334443 333 44432 33333334322 1100
Q ss_pred CCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 355 TPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
...... ...+.++++. .+|+++. + ++.|.||++.++.+..
T Consensus 222 ----------~~~i~W---~~~p~~~~~~--~pyli~~-~-~~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 222 ----------KSTIQW---SSAPQSVAYS--SPYLIAF-S-SNSIEVRSLETGELVQ 261 (275)
T ss_pred ----------ccEEEc---CCchhEEEEE--CCEEEEE-C-CCEEEEEECcCCcEEE
Confidence 011111 1245566663 5655544 4 3569999999986543
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.012 Score=48.59 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=80.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEeccc
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAH 272 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 272 (424)
++..-+.||.|+-++++....... .-..+...-..+.+ +. -+++|+.+|.|.+|........ ...+..-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~r-----se~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~--~d~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCR-----SERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAH--SDRVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhhh-----hhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchH--HHhhhcc
Confidence 355557788888888764322100 00011111111222 23 3568999999999988732210 1111112
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCC-CCEEEEEEcCCCCcEEEEE--eCCCeEEEeeCCC
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHK-EEVFQVGWNPKNETILASC--CLGRRLMVWDLSR 349 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~--~~dg~i~iwd~~~ 349 (424)
...|.++--.-+...+..++..||.|+.|++.. .+.+.....|+ .++..+..+..++ +++.+ |.|..++.|++..
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 233444333322333788999999999999875 55555555666 5555555555554 45555 6677777777765
Q ss_pred C
Q 014472 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
.
T Consensus 179 ~ 179 (238)
T KOG2444|consen 179 I 179 (238)
T ss_pred h
Confidence 4
No 386
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.1 Score=53.09 Aligned_cols=150 Identities=12% Similarity=0.147 Sum_probs=92.1
Q ss_pred cceeeEEeeCCCCcEEEE-EeCCCeEEEEECCCCCCC-----CCeeE---ecccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014472 228 GVVEDVAWHLRHEYLFGS-VGDDQYLLIWDLRTPSVS-----KPVQS---VVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s-~~~dg~i~i~d~~~~~~~-----~~~~~---~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i 298 (424)
.++..+...++.....+. .+.+-.|..||++.-... +++.. ......-..++.|+|.-....|....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666666665433323 334446889999864321 11111 111223456788999776667788889999
Q ss_pred EEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcc
Q 014472 299 KLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKIS 378 (424)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 378 (424)
++.-+......+..+. -...+++++|+|.|.+ ++.|-..|++.-|.....-. ..+. +|+.. ....|.
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik-~~ip----~Pp~~------e~yrvl 247 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIK-SEIP----EPPVE------ENYRVL 247 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeeccccee-eccc----CCCcC------CCccee
Confidence 9988876444445544 3678899999999985 88899999988887654211 1110 11110 135688
Q ss_pred eEEeCCCCCcEE
Q 014472 379 DFSWNPCEDWVI 390 (424)
Q Consensus 379 ~~~~~~~~~~~l 390 (424)
+|+|-....+++
T Consensus 248 ~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 248 SVTWLSTQEFLV 259 (1405)
T ss_pred EEEEecceeEEE
Confidence 999987766433
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=0.98 Score=41.85 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred eEEEEe-CCCcEEEEeCCCCCCCCcccceeeeec---C----CcceeeEEeeCCCCcEEEEEe------CCCeEEEEECC
Q 014472 193 HLLSGS-DDAQICLWDINAAPKNKSLEAMQIFKV---H----EGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLR 258 (424)
Q Consensus 193 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~---~----~~~v~~i~~~~~~~~~~~s~~------~dg~i~i~d~~ 258 (424)
+|+..+ ..+.|.|.|+.+......+. +.+.. + -.....+..-|+|+.++ ++- .-|-+.++|-.
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~--KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLH--KVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEE--EEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-TT
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceE--eeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcCc
Confidence 555555 78899999998654433321 11111 1 12333445567776443 442 23457777777
Q ss_pred CCCCCCCeeEecc---cCCCeeEEEecCCCCeEEEEEe--------------------CCCcEEEEECCCCCCcceeecC
Q 014472 259 TPSVSKPVQSVVA---HQSEVNCLAFNPFNEWILATGS--------------------TDKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 259 ~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~~g~--------------------~dg~i~iwd~~~~~~~~~~~~~ 315 (424)
+-+. ...... ....-+.+-|.|..+ ++++.. ...++.+||+.+ .+.++++..
T Consensus 166 tf~v---~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idL 240 (461)
T PF05694_consen 166 TFEV---KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDL 240 (461)
T ss_dssp T--E---EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES
T ss_pred cccc---cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEec
Confidence 6432 222222 122345677778555 565543 235899999998 788888875
Q ss_pred CCC--CEEEEEEc--CCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEc-----------------CCC
Q 014472 316 HKE--EVFQVGWN--PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHG-----------------GHT 374 (424)
Q Consensus 316 ~~~--~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~h~ 374 (424)
-.. ....+.|. |....-++.+...++|..|--.....=+ .+.+.... .-.
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~---------a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA---------AEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE---------EEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee---------eeEEEECCCcccCcccccccccccccCC
Confidence 433 35566665 4444445555555555555432221100 01111111 112
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.-|+++..|.|.++|.++.=.+|.|+.||++..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 458999999999988888889999999999874
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.24 E-value=0.019 Score=35.05 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
...|..++|+|... +||.+..+|.|.+++++..
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 34688999999999 8999999999999999544
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.12 Score=52.66 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=90.5
Q ss_pred CeeeEEecCCCCce-EEEEeCCCcEEEEeCCCCCCCCcc--cce---eeeecCCcceeeEEeeCCCCcEEEEEeCCCeEE
Q 014472 180 EGYGLSWSKFKEGH-LLSGSDDAQICLWDINAAPKNKSL--EAM---QIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLL 253 (424)
Q Consensus 180 ~v~~l~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~--~~~---~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~ 253 (424)
.+..+..++++... ++..+++-.|..||++.-...... .++ ...........++.|+|.=...+|.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555654422 333444457889999764322111 111 111112345668899987776677888999999
Q ss_pred EEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC----CCCCEEEEEEcCCC
Q 014472 254 IWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS----HKEEVFQVGWNPKN 329 (424)
Q Consensus 254 i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~sp~~ 329 (424)
+..+..... .... ......++|++|+|.|. .++.|...|++.-|-..- +....+.. ....|.+|+|-...
T Consensus 182 V~~~~~~~~--~v~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQ--NVTS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhh--hhcc-cCcccceeeEEeccccc-eeeEecCCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEecce
Confidence 987765331 1122 12356789999999998 699999999999886542 11112111 14789999998777
Q ss_pred CcEE
Q 014472 330 ETIL 333 (424)
Q Consensus 330 ~~~l 333 (424)
..++
T Consensus 256 eflv 259 (1405)
T KOG3630|consen 256 EFLV 259 (1405)
T ss_pred eEEE
Confidence 6433
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.18 E-value=1.2 Score=42.19 Aligned_cols=208 Identities=14% Similarity=0.168 Sum_probs=107.2
Q ss_pred EEecCCCCcEEEEEecC----------CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCC--eeeEEecCCCCceEEEEe
Q 014472 131 ARYMPQNPFLIATKTVS----------AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE--GYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 131 i~~~p~~~~~latg~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~ 198 (424)
+.|.+++..++.+.... ..|+.|.+.+. .......+...... ...+..++++..+++...
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--------~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--------QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---------GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC--------hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 99999988777775433 34788888762 12222334443332 568888998885454444
Q ss_pred CC---CcEEEEeCCCCCCCCcccceeeeecCCcce-eeEEeeCCCCcEEEEEe---CCCeEEEEECCCCCCCCCeeEecc
Q 014472 199 DD---AQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---DDQYLLIWDLRTPSVSKPVQSVVA 271 (424)
Q Consensus 199 ~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~~s~~---~dg~i~i~d~~~~~~~~~~~~~~~ 271 (424)
.. ..+.+.++.... ... .....+......+ ..+... +..+++... ..+.|...++...........+..
T Consensus 247 ~~~~~s~v~~~d~~~~~-~~~-~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 247 SGTSESEVYLLDLDDGG-SPD-AKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp SSSSEEEEEEEECCCTT-TSS--SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred ccccCCeEEEEeccccC-CCc-CCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 43 347777876541 001 1122222233333 334333 333443332 346777788877552111224445
Q ss_pred cCCCeeEEEecCCCCeEEEEEeCCC--cEEEEECCCCCCcceeecC-CCCCEEEEEEcCCCCcEEEEEeC---CCeEEEe
Q 014472 272 HQSEVNCLAFNPFNEWILATGSTDK--TVKLFDLRKISTALHTFDS-HKEEVFQVGWNPKNETILASCCL---GRRLMVW 345 (424)
Q Consensus 272 ~~~~v~~i~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~l~s~~~---dg~i~iw 345 (424)
+...+.--.+...+.++++....++ .|+++|+.. +.....+.. ..+.|..+...++++.++++.+. -+++.-|
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 5554333333444666777777666 588889882 233333332 34456777766766655555443 3457777
Q ss_pred eCCCCC
Q 014472 346 DLSRID 351 (424)
Q Consensus 346 d~~~~~ 351 (424)
|+.++.
T Consensus 402 d~~t~~ 407 (414)
T PF02897_consen 402 DLATGE 407 (414)
T ss_dssp ETTTTC
T ss_pred ECCCCC
Confidence 777653
No 391
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=1.1 Score=44.05 Aligned_cols=182 Identities=12% Similarity=0.172 Sum_probs=90.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecC
Q 014472 147 SAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVH 226 (424)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 226 (424)
.-.|+||++.. .....+.-..+++..+.|+.+.. |++...+|++++|++-....... .......
T Consensus 63 ~~~I~If~~sG-----------~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~---svg~e~~ 126 (829)
T KOG2280|consen 63 RPYIRIFNISG-----------QLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESN---SVGFESQ 126 (829)
T ss_pred ceeEEEEeccc-----------cchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhhhccc---ccccccc
Confidence 45688998876 22333332333788999998654 88889999999999865422110 0011222
Q ss_pred CcceeeEEeeCCCCcEEEEEeCCCeEEE-EECCCCCCCCCeeEecccCCCeeEEEecCCC--CeEEEEEe-CCCcEEEEE
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLI-WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--EWILATGS-TDKTVKLFD 302 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~~g~-~dg~i~iwd 302 (424)
...|..+.+...| ++ .-..+|.+.+ -+...... ......+....+-+|-...+.+ ..+++--. ..+ ..++-
T Consensus 127 ~~~I~ec~~f~~G--Va-vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q 201 (829)
T KOG2280|consen 127 MSDIVECRFFHNG--VA-VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQ 201 (829)
T ss_pred cCceeEEEEecCc--eE-EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccc
Confidence 3445556655554 22 3334555544 33332221 1111111111111222222221 11111111 111 11121
Q ss_pred CCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 303 LRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 303 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
..........+....+.+..+..||+.+ +|+--...|.|.+-.+...
T Consensus 202 ~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 202 VEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLS 248 (829)
T ss_pred eecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchh
Confidence 2211122223333346788999999986 6888888998888777653
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.95 E-value=1 Score=39.34 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=87.0
Q ss_pred ceeEEEecCCCCcEEEEE--ecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEE
Q 014472 127 EVNRARYMPQNPFLIATK--TVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQIC 204 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 204 (424)
.+...++++++..+.++. .....++++.... .....+. ...+..-.|.+++. +.+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----------~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----------PVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----------cceeecc--CCccccccccCCCC-EEEEEcCCCceE
Confidence 677899999998655555 2334555555433 1111122 23677889999865 555555566666
Q ss_pred EEe-CCCCCCCCcccceee-eecCCcceeeEEeeCCCCcEEEEE--eCCCeEEEEECCCCCCC------CCeeEecccCC
Q 014472 205 LWD-INAAPKNKSLEAMQI-FKVHEGVVEDVAWHLRHEYLFGSV--GDDQYLLIWDLRTPSVS------KPVQSVVAHQS 274 (424)
Q Consensus 205 vwd-~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~s~--~~dg~i~i~d~~~~~~~------~~~~~~~~~~~ 274 (424)
++. ...+... .... ...-...|..++++|+|..+.+.. ..++.|.+--+...... .++........
T Consensus 91 ~~~~~~~g~~~----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 91 VVRDSASGTGE----PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EEEecCCCcce----eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 664 2222111 1111 111112899999999998775554 23577777765432221 12222223356
Q ss_pred CeeEEEecCCCCeEEEEEeC-CCcEEE
Q 014472 275 EVNCLAFNPFNEWILATGST-DKTVKL 300 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~-dg~i~i 300 (424)
.++.++|.+++. +++.+.. ++.+..
T Consensus 167 ~v~~v~W~~~~~-L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 167 DVTDVAWSDDST-LVVLGRSAGGPVVR 192 (253)
T ss_pred cceeeeecCCCE-EEEEeCCCCCceeE
Confidence 899999999887 4444443 443433
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.90 E-value=1.5 Score=40.97 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=27.3
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 317 KEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 317 ~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+.+++.+|.+. +.|+...=|.|.++|+..+.
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~ 340 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI 340 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh
Confidence 34578899999985 67777777999999998764
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.76 E-value=1.5 Score=40.00 Aligned_cols=248 Identities=15% Similarity=0.151 Sum_probs=114.6
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEE----ecCCCCeeeEEecCC--CCceEEEEeC-
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRL----RGHSTEGYGLSWSKF--KEGHLLSGSD- 199 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~--~~~~l~s~~~- 199 (424)
....|+|.|++. ++++ ...|.|++++.... .......+ .........++++|+ .+.+|.....
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~~~g~--------~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVDKDGS--------LKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEETTTE--------ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEeCCCc--------CcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 357899999986 5554 66999999993331 00111111 223456789999994 1123333322
Q ss_pred C--------CcEEEEeCCCCCC-CCccc-ceeeeec---CCcceeeEEeeCCCCcEEEEEeCC-------------CeEE
Q 014472 200 D--------AQICLWDINAAPK-NKSLE-AMQIFKV---HEGVVEDVAWHLRHEYLFGSVGDD-------------QYLL 253 (424)
Q Consensus 200 d--------g~i~vwd~~~~~~-~~~~~-~~~~~~~---~~~~v~~i~~~~~~~~~~~s~~~d-------------g~i~ 253 (424)
. ..|.-|....... ....+ .+..... ....-..|.|.|++ .|+++.+.. |.|.
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~il 151 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKIL 151 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEE
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEE
Confidence 1 2344444433210 00011 1111111 22345569999999 466565543 2333
Q ss_pred EEECCCCC-----------CCCCeeEecccCCCeeEEEecCC-CCeEEEE-EeCCCcEEEEECCCCC-------------
Q 014472 254 IWDLRTPS-----------VSKPVQSVVAHQSEVNCLAFNPF-NEWILAT-GSTDKTVKLFDLRKIS------------- 307 (424)
Q Consensus 254 i~d~~~~~-----------~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~~-g~~dg~i~iwd~~~~~------------- 307 (424)
-.+....- ....+. -.++ .....++|+|. +. ++++ -+.++.=.|--++...
T Consensus 152 ri~~dG~~p~dnP~~~~~~~~~~i~-A~Gl-RN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~ 228 (331)
T PF07995_consen 152 RIDPDGSIPADNPFVGDDGADSEIY-AYGL-RNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKY 228 (331)
T ss_dssp EEETTSSB-TTSTTTTSTTSTTTEE-EE---SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCST
T ss_pred EecccCcCCCCCccccCCCceEEEE-EeCC-CccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCC
Confidence 33332110 000011 0122 23467899998 54 4433 2223322222222110
Q ss_pred ---------------CcceeecCCCCCEEEEEEcCCC------CcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCee
Q 014472 308 ---------------TALHTFDSHKEEVFQVGWNPKN------ETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPEL 366 (424)
Q Consensus 308 ---------------~~~~~~~~~~~~v~~~~~sp~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 366 (424)
.|+..+..| .+++.+.|.... ..+|++.-..+.|....+....... ..
T Consensus 229 ~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~----------~~ 297 (331)
T PF07995_consen 229 SGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT----------EE 297 (331)
T ss_dssp TSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE----------EE
T ss_pred CCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc----------ce
Confidence 133444443 567777776432 1356555556677777765332110 11
Q ss_pred eEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014472 367 LFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 367 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 400 (424)
...+......+.++++.|||. |+++.+.+|.|.
T Consensus 298 ~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 298 EEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp EEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred EEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 111234445799999999999 777777788763
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.74 E-value=1.2 Score=38.80 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=88.2
Q ss_pred ceeeEEeeCCCCcEEEEEe--CCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE-CCC
Q 014472 229 VVEDVAWHLRHEYLFGSVG--DDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD-LRK 305 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd-~~~ 305 (424)
.+.+.++++++..+.+... ....++++... .....+. ....+..-.|++++. +.+....+...+++. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~----~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL----TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec----cCCccccccccCCCC-EEEEEcCCCceEEEEecCC
Confidence 6888999999986654442 33445555433 3211111 234788889999965 566655566666663 222
Q ss_pred CCCcceeecCC--CCCEEEEEEcCCCCcEEEEEe--CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEE
Q 014472 306 ISTALHTFDSH--KEEVFQVGWNPKNETILASCC--LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFS 381 (424)
Q Consensus 306 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 381 (424)
........... ...|+.+.+||+|..+.+... .++.|.+=-+.....-... .-...+.........+.+++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~-----~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR-----RLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc-----eeccceEecccccCcceeee
Confidence 12222222221 128999999999987555552 3566776655432211000 00011222223345789999
Q ss_pred eCCCCCcEEEEEeCCCcEEE
Q 014472 382 WNPCEDWVISSVAEDNILQI 401 (424)
Q Consensus 382 ~~~~~~~~l~s~~~d~~i~i 401 (424)
|.+++..++++...++.+..
T Consensus 173 W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ecCCCEEEEEeCCCCCceeE
Confidence 99999944444444443444
No 396
>PRK10115 protease 2; Provisional
Probab=95.57 E-value=3.1 Score=42.20 Aligned_cols=200 Identities=7% Similarity=0.033 Sum_probs=98.9
Q ss_pred ceeEEEecCCCCcEEEEEecC----CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCC--
Q 014472 127 EVNRARYMPQNPFLIATKTVS----AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDD-- 200 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-- 200 (424)
.+..+.++|+++.++.+...+ ..|++.|+.+. ... ...+.+ . -..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------~~l-~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~ 195 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------NWY-PELLDN-V--EPSFVWANDSWTFYYVRKHPVT 195 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------CCC-CccccC-c--ceEEEEeeCCCEEEEEEecCCC
Confidence 466788999998444433333 36888888651 100 111111 1 14699999888655554432
Q ss_pred ---CcEEEEeCCCCCCCCcccceeeeecCCccee-eEEeeCCCCcEEEEEeC--CCeEEEEECCCCCCCCCeeEecccCC
Q 014472 201 ---AQICLWDINAAPKNKSLEAMQIFKVHEGVVE-DVAWHLRHEYLFGSVGD--DQYLLIWDLRTPSVSKPVQSVVAHQS 274 (424)
Q Consensus 201 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~ 274 (424)
..|..+++.++.... ...+........ .+..+.++..+++.... ++.+.+++...... .+...+.....
T Consensus 196 ~~~~~v~~h~lgt~~~~d----~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 270 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQD----ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKD 270 (686)
T ss_pred CCCCEEEEEECCCChhHC----eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCC
Confidence 357777887663211 112222222222 23334477766644433 45788888543221 11111211122
Q ss_pred CeeEEEecCCCCeEEEEEeCC-C--cEEEEECCCCCCcceeecCC-C-CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCC
Q 014472 275 EVNCLAFNPFNEWILATGSTD-K--TVKLFDLRKISTALHTFDSH-K-EEVFQVGWNPKNETILASCCLGRRLMVWDLS 348 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~-~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~ 348 (424)
....+. +..+. +++....+ . .|...++.... ....+..+ . ..|..+.+. +..++++...+|.-+++-+.
T Consensus 271 ~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 271 HEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 222222 33233 33333222 2 34444444312 22334444 2 367888887 33578888888876666554
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=1.6 Score=38.17 Aligned_cols=172 Identities=12% Similarity=0.194 Sum_probs=99.1
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecc-cCCCeeEEEecCCCCeEEEEEeCCCcEEEEEC
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVA-HQSEVNCLAFNPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~ 303 (424)
+-...+.++.|+|+.+.+|++....-.|.=.+. .++. +.++.- .-.....|.+...|. +.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~Gdl---irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDL---IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEec-CCce---EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 445569999999999999876655544443333 3443 333211 123456677776565 3445456778888776
Q ss_pred CCCCCc---------ceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCC-CeeeEEEcCC
Q 014472 304 RKISTA---------LHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGP-PELLFIHGGH 373 (424)
Q Consensus 304 ~~~~~~---------~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~h 373 (424)
...... +......+...-.++|.|.... |..+-.-.-+.||.+................ ...++
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f----- 231 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLF----- 231 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccccccCcccccceE-----
Confidence 642211 1112222567789999999875 5566666668888776432111111000000 00111
Q ss_pred CCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 374 TSKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
-..|.++.|++....+++-+.+++.+.-.+...+
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 1247788898776657777777887777777655
No 398
>PHA03098 kelch-like protein; Provisional
Probab=95.39 E-value=1.2 Score=43.83 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred CcEEEEEeCC------CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC--------cEEEEECCC
Q 014472 240 EYLFGSVGDD------QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK--------TVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg--------~i~iwd~~~ 305 (424)
..+++.||.+ ..+..||+.+..- ..+..+....... +++.. ++.+++.|+.++ .+.+||..+
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 4577777732 4588899887542 2222111111111 22222 334777776532 378888875
Q ss_pred CC-CcceeecCCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEeeCCCC
Q 014472 306 IS-TALHTFDSHKEEVFQVGWNPKNETILASCCLG-----RRLMVWDLSRI 350 (424)
Q Consensus 306 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d-----g~i~iwd~~~~ 350 (424)
.. ..+..+.........+.+ ++ .+++.|+.+ ..+.+||..+.
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCC
Confidence 21 111111111111122222 34 466666654 35677776653
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.31 E-value=3 Score=40.44 Aligned_cols=154 Identities=8% Similarity=0.055 Sum_probs=77.1
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcce-eeEEeeCCCCcEEEEEe---------CCCeEEEEECCCCCC
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVV-EDVAWHLRHEYLFGSVG---------DDQYLLIWDLRTPSV 262 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~~s~~---------~dg~i~i~d~~~~~~ 262 (424)
.++.++.+|.|..+|.++++............ ....+ ....+. +..++ .++ .+|.+..+|..+++.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~--~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIV--KKLVI-IGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEE--CCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence 68888889999999999886543322110000 00001 111122 12233 333 367889999988764
Q ss_pred CCCeeEecc----------------cC-CCe-eEEEecCCCCeEEEEEeCCC------------------cEEEEECCCC
Q 014472 263 SKPVQSVVA----------------HQ-SEV-NCLAFNPFNEWILATGSTDK------------------TVKLFDLRKI 306 (424)
Q Consensus 263 ~~~~~~~~~----------------~~-~~v-~~i~~~~~~~~~l~~g~~dg------------------~i~iwd~~~~ 306 (424)
.-....... +. ..+ .+.++++.+. +++.++.++ .|.-+|+.+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t- 265 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT- 265 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-
Confidence 221111000 00 001 1234444455 466666554 688888887
Q ss_pred CCcceeecCCCCCE------EEEEEc----CCC--CcEEEEEeCCCeEEEeeCCCCCc
Q 014472 307 STALHTFDSHKEEV------FQVGWN----PKN--ETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 307 ~~~~~~~~~~~~~v------~~~~~s----p~~--~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
++.+-.++.-.... ...... -++ ..+++.++.+|.+...|..++..
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 55544443111100 000111 112 12567778888888888887764
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.26 E-value=1.7 Score=43.25 Aligned_cols=117 Identities=12% Similarity=0.092 Sum_probs=74.2
Q ss_pred ceeeEEeeCC-CCcEEEEEeCCCeEEEEECCC-------C----------CCCCCeeEecccCCCeeEEEec--CCCCeE
Q 014472 229 VVEDVAWHLR-HEYLFGSVGDDQYLLIWDLRT-------P----------SVSKPVQSVVAHQSEVNCLAFN--PFNEWI 288 (424)
Q Consensus 229 ~v~~i~~~~~-~~~~~~s~~~dg~i~i~d~~~-------~----------~~~~~~~~~~~~~~~v~~i~~~--~~~~~~ 288 (424)
.|+.|....- +..+|+.|.+||.|.+|.++. . ...+|...+. -...+..++++ ... ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eE
Confidence 4555554332 345778899999999996621 0 0112322222 34578889987 544 48
Q ss_pred EEEEeCCCcEEEEECCCC--CCcceeecCCCCCEEEEEEcCCC--C---cEEEEEeCCCeEEEeeC
Q 014472 289 LATGSTDKTVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKN--E---TILASCCLGRRLMVWDL 347 (424)
Q Consensus 289 l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~sp~~--~---~~l~s~~~dg~i~iwd~ 347 (424)
||+++....|.||-.... ......-..|...|-+|+|-++. + -.|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888765431 11111112356788999997754 2 26778889999999888
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.23 E-value=0.0047 Score=60.67 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=60.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEe---cCCCCeeeEEecCC--CCceEEEE
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLR---GHSTEGYGLSWSKF--KEGHLLSG 197 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~--~~~~l~s~ 197 (424)
+.++.|-.++|...+.-.++ -.-|...||++.....+ ..+...+. .....+.-+.|+|- ..-++..+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~------iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~ 201 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE------IQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG 201 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccc------cccceEEeecCcCCCCcceeeecccccccceeeec
Confidence 45678888888442211122 33477899998763222 22222221 22334455666653 22356667
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEE
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLF 243 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 243 (424)
..++.|++...+... ...+.+|...+.+++|...|-.++
T Consensus 202 ~~~~~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l 240 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKL 240 (1283)
T ss_pred cCCCceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhh
Confidence 778899988776542 134556888888888766554333
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.20 E-value=1.7 Score=43.36 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=69.4
Q ss_pred CceEEEEeCCCcEEEEeCCC-------C-------CCCCcccceeeeecCCcceeeEEee--CCCCcEEEEEeCCCeEEE
Q 014472 191 EGHLLSGSDDAQICLWDINA-------A-------PKNKSLEAMQIFKVHEGVVEDVAWH--LRHEYLFGSVGDDQYLLI 254 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~-------~-------~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~~s~~~dg~i~i 254 (424)
...|+.|..||.|.+|.++. . .....+++...+. ....++.++++ ... .++|+++....|.|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAVSSNSQEVTV 191 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-eEEEEecCCceEEE
Confidence 34789999999999997632 0 0001112222222 34588999998 554 57888888888888
Q ss_pred EECCCCCCCCCeeEecccCCCeeEEEecCCC--C---eEEEEEeCCCcEEEEEC
Q 014472 255 WDLRTPSVSKPVQSVVAHQSEVNCLAFNPFN--E---WILATGSTDKTVKLFDL 303 (424)
Q Consensus 255 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~---~~l~~g~~dg~i~iwd~ 303 (424)
|-............-..+...|.+|+|-++. + -.+++++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7654422111111112356678899987654 1 25778889999999888
No 403
>PHA03098 kelch-like protein; Provisional
Probab=95.19 E-value=1 Score=44.29 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=71.8
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCC------CcEEEEECCCCC-
Q 014472 240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTD------KTVKLFDLRKIS- 307 (424)
Q Consensus 240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~d------g~i~iwd~~~~~- 307 (424)
..+++.||.+ ..+..||..+..- .....+...... .+++.. +..+++.||.+ ..+..||+.+..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~lp~~r~~-~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKW-REEPPLIFPRYN-PCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCce-eeCCCcCcCCcc-ceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 4577788765 3477888876542 222111111111 122222 33477777742 357889987521
Q ss_pred CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCC--------eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcce
Q 014472 308 TALHTFDSHKEEVFQVGWNPKNETILASCCLGR--------RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISD 379 (424)
Q Consensus 308 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 379 (424)
..+..+....... ++.. .++ .+++.|+.++ .+.+||..+..-.... .+ .........
T Consensus 419 ~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~--------~~----~~~r~~~~~ 483 (534)
T PHA03098 419 SKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS--------SL----NFPRINASL 483 (534)
T ss_pred eecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCC--------CC----CcccccceE
Confidence 1111111111111 1222 233 4666665431 3777887764321110 00 000011111
Q ss_pred EEeCCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCC
Q 014472 380 FSWNPCEDWVISSVAED-----NILQIWQMAENIYHDEDD 414 (424)
Q Consensus 380 ~~~~~~~~~~l~s~~~d-----~~i~iw~~~~~~~~~~~~ 414 (424)
+.+ ++. +++.||.+ +.+.+||+.++.+.....
T Consensus 484 ~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 484 CIF--NNK-IYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred EEE--CCE-EEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 222 455 67777654 478899999887764443
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.07 E-value=0.012 Score=58.04 Aligned_cols=135 Identities=11% Similarity=0.097 Sum_probs=74.7
Q ss_pred CcEEEEEEeccCCceeEEEecCC--CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEE------
Q 014472 114 GKVQIIQQINHDGEVNRARYMPQ--NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLS------ 185 (424)
Q Consensus 114 ~~~~~~~~~~h~~~v~~i~~~p~--~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~------ 185 (424)
+.+.+.-.-+-...+.-+.|+|- +..++..+-.++.|++..++.. ....+.+|...+..++
T Consensus 169 ~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~ 237 (1283)
T KOG1916|consen 169 PQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGV 237 (1283)
T ss_pred cceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH-----------HHHHHHhcCCCcccHHHHhhch
Confidence 34444333344456677777772 3346777888899999887761 1123445766655554
Q ss_pred -----ecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCC-cceeeEEeeCCC---------CcEEEEEeCCC
Q 014472 186 -----WSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRH---------EYLFGSVGDDQ 250 (424)
Q Consensus 186 -----~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~---------~~~~~s~~~dg 250 (424)
.+|+|. .|+.++.||.++.|.+.-... ....++..++.|. .+-.|.-|+... ..+|-+...+.
T Consensus 238 ~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nr 315 (1283)
T KOG1916|consen 238 LKLASLSPDGT-VFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNR 315 (1283)
T ss_pred hhheeeCCCCc-EEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCc
Confidence 467776 677777888877776643221 2223455566666 333333233221 12232333455
Q ss_pred eEEEEECCCCC
Q 014472 251 YLLIWDLRTPS 261 (424)
Q Consensus 251 ~i~i~d~~~~~ 261 (424)
.+++|....-+
T Consensus 316 e~k~w~~a~w~ 326 (1283)
T KOG1916|consen 316 EEKFWAEAPWQ 326 (1283)
T ss_pred ceeEeeccchh
Confidence 68888765543
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.82 E-value=0.11 Score=30.73 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.3
Q ss_pred CceeEEEecCCCC--cEEEEEecCCeEEEEeCCC
Q 014472 126 GEVNRARYMPQNP--FLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 126 ~~v~~i~~~p~~~--~~latg~~dg~v~iwd~~~ 157 (424)
++|.+++|+|... .+||..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998654 6899888899999999984
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.81 E-value=2.1 Score=42.24 Aligned_cols=123 Identities=14% Similarity=0.229 Sum_probs=67.6
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec-CCCCCEEEEEEc--CCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD-SHKEEVFQVGWN--PKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
.+.-+.-+..++ +.++-+....+.|||.+. +..-.... ...+.|..+.|. |+++. +++.+....|.++--....
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchh
Confidence 444444455454 333334445899999987 33221111 347789999996 67765 4555667778887543211
Q ss_pred cccCCCccCCCCCeeeEEEcCCC-CCcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 352 EEQTPEDAEDGPPELLFIHGGHT-SKISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.. ...+ ...+........|+ .+|.+..|.++|. +++.+ ++.+.|++-.-
T Consensus 108 y~--~~~p-~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 108 YT--NKGP-SWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKWL 157 (631)
T ss_pred hh--cCCc-ccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCCc
Confidence 00 0000 01111111223343 5799999999998 44433 46788886543
No 407
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.80 E-value=3 Score=37.62 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=118.4
Q ss_pred EEecCCCCcEEEE---------EecCCeEEEEeCCCCCCCCCCCCCCCCcEE--EecC-C----CCeeeEEecCCCCceE
Q 014472 131 ARYMPQNPFLIAT---------KTVSAEVYVFDYSKHPSKPPLDGACSPDLR--LRGH-S----TEGYGLSWSKFKEGHL 194 (424)
Q Consensus 131 i~~~p~~~~~lat---------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~h-~----~~v~~l~~~~~~~~~l 194 (424)
+..+|+++.+.++ |-..-.|.+||..+ ..+... +... . .....++++.+++ ++
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T----------L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~ 109 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT----------LSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FL 109 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT----------TEEEEEEEETTS-B--BS--GGGEEE-TTSS-EE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc----------CcccceEecCCcchheecccccceEEccCCc-EE
Confidence 5678888744332 22345899999988 222222 2211 1 1123345555555 33
Q ss_pred EEE--eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee--Eec
Q 014472 195 LSG--SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SVV 270 (424)
Q Consensus 195 ~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~~ 270 (424)
+.. +--.+|.|-|+...+. +..+. -. . |...-|.++.-|.+.+.||.+.-..+.......... .+.
T Consensus 110 ~V~N~TPa~SVtVVDl~~~kv------v~ei~-~P-G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAKKV------VGEID-TP-G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEEEESSSEEEEEEETTTTEE------EEEEE-GT-S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred EEEccCCCCeEEEEECCCCce------eeeec-CC-C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 332 2234566666654421 11111 11 1 222234444457788999999999888433211111 111
Q ss_pred ccCCCe-eEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-cceeecC----------CCCCEEEEEEcCCCCcEEEEEeC
Q 014472 271 AHQSEV-NCLAFNPFNEWILATGSTDKTVKLFDLRKIST-ALHTFDS----------HKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 271 ~~~~~v-~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~----------~~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.-..++ ..-++...+.. ++--+..|.|+-.|+..... ....+.. ..+.-.-+++++....+++.-..
T Consensus 180 ~~~dp~f~~~~~~~~~~~-~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 180 PDDDPLFEHPAYSRDGGR-LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp TTTS-B-S--EEETTTTE-EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCcccccccceECCCCe-EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 111222 23334343443 33467889999988876321 1111111 01223346666654433332211
Q ss_pred -------CC--eEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEE-eCCCcEEEEecCCCC
Q 014472 339 -------GR--RLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSV-AEDNILQIWQMAENI 408 (424)
Q Consensus 339 -------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~ 408 (424)
|+ .|-++|+.+. +.+..+.. ...+.++..+.+.+-+|++. ..++.|.+||..++.
T Consensus 259 g~~gsHKdpgteVWv~D~~t~--------------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTH--------------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTT--------------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCCCccCCceEEEEEECCCC--------------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 11 2556666654 33333321 23478899988776456554 468999999999987
Q ss_pred CCCC
Q 014472 409 YHDE 412 (424)
Q Consensus 409 ~~~~ 412 (424)
+...
T Consensus 324 ~~~~ 327 (342)
T PF06433_consen 324 LVRS 327 (342)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6443
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.76 E-value=2.6 Score=39.65 Aligned_cols=153 Identities=13% Similarity=0.173 Sum_probs=88.1
Q ss_pred eEEecCCCCceEE-EEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCC-------cEEEEEeCCCeEEE
Q 014472 183 GLSWSKFKEGHLL-SGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE-------YLFGSVGDDQYLLI 254 (424)
Q Consensus 183 ~l~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~~~~s~~~dg~i~i 254 (424)
.+..+.+...+|+ .|..-..++-.|+..+.. +..+..|..- -+.|.|... ..+ .|-.+..|.-
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFr 541 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFR 541 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEE
Confidence 3344433443443 455555666667766633 3444444433 456665421 123 4555666777
Q ss_pred EECCCCCCCCCeeEec--ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcE
Q 014472 255 WDLRTPSVSKPVQSVV--AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 255 ~d~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 332 (424)
.|.|.....-.+...+ .......|..-.. +. ++|+|+..|.|++||.-. ......+.+-...|..+..+.+|..+
T Consensus 542 IDPR~~gNKi~v~esKdY~tKn~Fss~~tTe-sG-yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~i 618 (776)
T COG5167 542 IDPRARGNKIKVVESKDYKTKNKFSSGMTTE-SG-YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHI 618 (776)
T ss_pred ecccccCCceeeeeehhcccccccccccccc-Cc-eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEE
Confidence 7777544211111111 1122233333333 33 599999999999999653 34455667778899999999999977
Q ss_pred EEEEeCCCeEEEeeCCC
Q 014472 333 LASCCLGRRLMVWDLSR 349 (424)
Q Consensus 333 l~s~~~dg~i~iwd~~~ 349 (424)
||+|- ..+.+-|++-
T Consensus 619 laTCk--~yllL~d~~i 633 (776)
T COG5167 619 LATCK--NYLLLTDVPI 633 (776)
T ss_pred EEeec--ceEEEEeccc
Confidence 77763 4677777753
No 409
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.65 E-value=0.14 Score=30.31 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.5
Q ss_pred CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCC
Q 014472 274 SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 274 ~~v~~i~~~~~~~--~~l~~g~~dg~i~iwd~~~ 305 (424)
+.+.++.|+|... .+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999997544 5788888889999999995
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=3 Score=38.70 Aligned_cols=122 Identities=15% Similarity=0.245 Sum_probs=78.1
Q ss_pred ccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCc
Q 014472 123 NHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQ 202 (424)
Q Consensus 123 ~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 202 (424)
.-.|+|.+|+|++|++ ++|+--.+.+|.+++....... .....+.+..+..|.+..|..+.. +|..+..|
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~------l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G- 133 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQ------LEYTQECKTKNANILGFCWTSSTE--IAFITDQG- 133 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchh------hHHHHHhccCcceeEEEEEecCee--EEEEecCC-
Confidence 3456999999999987 8999999999999998552111 111122233445688999987633 55555443
Q ss_pred EEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-CCCeEEEEECCC
Q 014472 203 ICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-DDQYLLIWDLRT 259 (424)
Q Consensus 203 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-~dg~i~i~d~~~ 259 (424)
+-+|.+.... ..++..+.|...|+...|.++.+.++.+.+ ...++.=+-+++
T Consensus 134 ~e~y~v~pek-----rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 134 IEFYQVLPEK-----RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred eEEEEEchhh-----hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 5666654322 234455668888999999998876555544 334444444443
No 411
>PRK10115 protease 2; Provisional
Probab=94.47 E-value=6.4 Score=40.02 Aligned_cols=203 Identities=10% Similarity=0.102 Sum_probs=101.2
Q ss_pred CeeeEEecCCCCceEEEEeCCC----cEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC-----C
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDA----QICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD-----Q 250 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d-----g 250 (424)
.+..+.|+|++..+.++.+.+| .|++.|+.++.... ..+.. . . ..++|.+++..++.+...+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~~-~-~-~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLDN-V-E-PSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----ccccC-c-c-eEEEEeeCCCEEEEEEecCCCCCCC
Confidence 4567889999884444433333 58888997663211 11111 1 1 4589999998787665533 3
Q ss_pred eEEEEECCCCCCCCCeeEecccCCCee-EEEecCCCCeEEEEEeC--CCcEEEEECCCC-CCcceeecCCCCCEEEEEEc
Q 014472 251 YLLIWDLRTPSVSKPVQSVVAHQSEVN-CLAFNPFNEWILATGST--DKTVKLFDLRKI-STALHTFDSHKEEVFQVGWN 326 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~l~~g~~--dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s 326 (424)
.|+.+++.++... ....+........ .+..+.++.++++.... ++.+.+++.... +.+...+.........+. +
T Consensus 200 ~v~~h~lgt~~~~-d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 200 QVWRHTIGTPASQ-DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred EEEEEECCCChhH-CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 6778888876311 1222222222333 33334467765544433 357888885432 222222222222223332 3
Q ss_pred CCCCcEEEEEeC-CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecC
Q 014472 327 PKNETILASCCL-GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 327 p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 405 (424)
..+ .+++.... ....+|..+..... ...+.+.... ....|..+.+. +.+++++...++.-+++-+.
T Consensus 278 ~~~-~ly~~tn~~~~~~~l~~~~~~~~---------~~~~~l~~~~-~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQH-RFYLRSNRHGKNFGLYRTRVRDE---------QQWEELIPPR-ENIMLEGFTLF--TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCC-EEEEEEcCCCCCceEEEecCCCc---------ccCeEEECCC-CCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEc
Confidence 333 33333322 22344443332110 0112222221 12357777776 44578888888877776654
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.45 E-value=3.5 Score=36.90 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=73.3
Q ss_pred ecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE
Q 014472 175 RGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (424)
Q Consensus 175 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i 254 (424)
..-.+.+..+.-++++. ++++++....+.-||.... ...+. -......|..+.|.|++. +.+ ....|.|+.
T Consensus 141 ~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~----~w~~~--~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~ 211 (302)
T PF14870_consen 141 SETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQT----TWQPH--NRNSSRRIQSMGFSPDGN-LWM-LARGGQIQF 211 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S----S-EEE--E--SSS-EEEEEE-TTS--EEE-EETTTEEEE
T ss_pred cCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCc----cceEE--ccCccceehhceecCCCC-EEE-EeCCcEEEE
Confidence 34556788888888887 6666655555567776432 11111 122457899999999975 543 448898888
Q ss_pred EECC-CCCC-CCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec---CCCCCEEEEEEcCCC
Q 014472 255 WDLR-TPSV-SKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKN 329 (424)
Q Consensus 255 ~d~~-~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~ 329 (424)
=+.. .... .+++.......-.+..++|.+.+. +.|+|+ .|.+ +..... ++--.... .-......+.|.+..
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDG-GKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESST-TSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCC-CccceECccccCCCCceEEEEEcCCC
Confidence 7722 1111 011111111233478999999876 566655 4543 233333 33332222 224567888887654
Q ss_pred CcEEEEEeCCCeEEEe
Q 014472 330 ETILASCCLGRRLMVW 345 (424)
Q Consensus 330 ~~~l~s~~~dg~i~iw 345 (424)
+ -.+.+.+|.|.-|
T Consensus 288 ~--gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 K--GFVLGQDGVLLRY 301 (302)
T ss_dssp E--EEEE-STTEEEEE
T ss_pred c--eEEECCCcEEEEe
Confidence 3 3345668876544
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.35 E-value=0.66 Score=43.43 Aligned_cols=144 Identities=14% Similarity=0.189 Sum_probs=89.6
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCe------EEEEEeCCCcEEEEECCCCCCcce
Q 014472 238 RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEW------ILATGSTDKTVKLFDLRKISTALH 311 (424)
Q Consensus 238 ~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~------~l~~g~~dg~i~iwd~~~~~~~~~ 311 (424)
+...++..|+.-..++-.|+..++. +.....|..- -+.|.|...+ .-++|-.+..|.-.|.|..+..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv---veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV---VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeeccccee---eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 4444555666667788888888775 5556555443 6777775421 123566677777778886554443
Q ss_pred eecCCCCCEEEEEEc-----CCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCC
Q 014472 312 TFDSHKEEVFQVGWN-----PKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCE 386 (424)
Q Consensus 312 ~~~~~~~~v~~~~~s-----p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 386 (424)
.... ..-++.-.|+ ..| ++|+++..|-|++||--.... ...+.+-...|..+..+.+|
T Consensus 553 v~es-KdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA--------------KtalP~lG~aIk~idvta~G 615 (776)
T COG5167 553 VVES-KDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA--------------KTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred eeee-hhccccccccccccccCc--eEEEecCCCceeeehhhcchh--------------hhcCcccccceeeeEeecCC
Confidence 3332 2223333333 333 799999999999999644221 12223445678899999999
Q ss_pred CcEEEEEeCCCcEEEEecC
Q 014472 387 DWVISSVAEDNILQIWQMA 405 (424)
Q Consensus 387 ~~~l~s~~~d~~i~iw~~~ 405 (424)
.++|+|+ ...+.+-++.
T Consensus 616 k~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 616 KHILATC--KNYLLLTDVP 632 (776)
T ss_pred cEEEEee--cceEEEEecc
Confidence 9877775 3567776664
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.31 E-value=6 Score=40.14 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCC---CCCCCCCCCCCcEEE--------ecCCCCeeeEEecCCC--C
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHP---SKPPLDGACSPDLRL--------RGHSTEGYGLSWSKFK--E 191 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~--~ 191 (424)
.-.|..|.++|.|. ++|..+..| |.|-.+.... .............++ ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 35888999999997 566666555 5555554321 111000000111111 1344578999999974 2
Q ss_pred ceEEEEeCCCcEEEEeCCCCCC
Q 014472 192 GHLLSGSDDAQICLWDINAAPK 213 (424)
Q Consensus 192 ~~l~s~~~dg~i~vwd~~~~~~ 213 (424)
..|++=..|+++++||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 3688888899999999975543
No 415
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.21 E-value=0.0075 Score=55.36 Aligned_cols=145 Identities=13% Similarity=0.173 Sum_probs=98.6
Q ss_pred CCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECC
Q 014472 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
.......|-+.+.+ ++.++.+..+..||-...... . ...++...+++|..+++.+++.+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~l-------e-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVIL-------E-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEecCCCc-eehhhhhhHHHhhhhhcceec-------c-cCCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 34456778888876 777777888888986433111 0 11356677889998888887778889999999998
Q ss_pred CCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeC
Q 014472 259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
+... ..+..-..|... -+.|++..+ .++.|...|.+.|+..+. .+.+...-.|...+++++|.+.+. .+.++.
T Consensus 106 ~eyt-qqLE~gg~~s~s--ll~wsKg~~-el~ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~--vil~dc 178 (615)
T KOG2247|consen 106 SEYT-QQLESGGTSSKS--LLAWSKGTP-ELVIGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY--VILCDC 178 (615)
T ss_pred hhhH-HHHhccCcchHH--HHhhccCCc-cccccccccceEEEeccc-hhhhhhhcccccceeEEEecccce--eeecCc
Confidence 7542 112111112222 267888776 588888999999999887 344444444889999999999874 444444
Q ss_pred C
Q 014472 339 G 339 (424)
Q Consensus 339 d 339 (424)
|
T Consensus 179 d 179 (615)
T KOG2247|consen 179 D 179 (615)
T ss_pred H
Confidence 4
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=94.03 E-value=3.3 Score=40.13 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=46.3
Q ss_pred eEEEEeCC--CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCC---eEEEEECCCCCCCCCee
Q 014472 193 HLLSGSDD--AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQ---YLLIWDLRTPSVSKPVQ 267 (424)
Q Consensus 193 ~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg---~i~i~d~~~~~~~~~~~ 267 (424)
+.+.|+.+ ..+..||..++. +..+..+.........+.. +..+++.||.++ .+..||.++..- ....
T Consensus 321 iYviGG~~~~~sve~ydp~~n~----W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~ 392 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAA----WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQW-QFGP 392 (480)
T ss_pred EEEECCcCCCCceEEEECCCCe----EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEE-EeCC
Confidence 56666653 357778865432 1111222111111112222 345777887654 467888876542 1111
Q ss_pred EecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 268 SVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 268 ~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
.+.........+.+ +..+.+.|+ .+.+||.++
T Consensus 393 ~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 393 STYYPHYKSCALVF---GRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCccccceEEEE---CCEEEEECC---ceEEecCCC
Confidence 11111111222222 334666664 577888865
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.93 E-value=5.4 Score=37.10 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=75.8
Q ss_pred CceeEEEecCCCCcEEEEEe-----------cCC-eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCce
Q 014472 126 GEVNRARYMPQNPFLIATKT-----------VSA-EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGH 193 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 193 (424)
.....|+|.++|. ++++-. ..+ .|.+++-.... +.......+........++++.+++ +
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd------G~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGD------GKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC------CCcceeEEeecCCCCccceeEecCC--E
Confidence 4567789999887 444421 223 77777644311 1112223333334456889998765 4
Q ss_pred EEEEeCCCcEEEEeCCCCCCCC-ccc-ceeeeec----CCcceeeEEeeCCCCcEEEEEeCC------------------
Q 014472 194 LLSGSDDAQICLWDINAAPKNK-SLE-AMQIFKV----HEGVVEDVAWHLRHEYLFGSVGDD------------------ 249 (424)
Q Consensus 194 l~s~~~dg~i~vwd~~~~~~~~-~~~-~~~~~~~----~~~~v~~i~~~~~~~~~~~s~~~d------------------ 249 (424)
++ ++.....++.|........ ..+ .+..+.. +....+.++|.|++. |+++.+..
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCccccc
Confidence 44 4444433444554322111 111 1122221 234578899999986 44443311
Q ss_pred -CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEE
Q 014472 250 -QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATG 292 (424)
Q Consensus 250 -g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g 292 (424)
|.|.-+|..... +..+...-.....++|+|+|. ++++-
T Consensus 163 ~g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 163 GGGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred CceEEEEecCCCe----EEEEecCcCCCccceECCCCC-EEEEc
Confidence 345555554432 222222223456899999887 45543
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.61 E-value=3 Score=41.18 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=67.3
Q ss_pred ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec--CCCCeEEEEEeCCCcEEEEECC--
Q 014472 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN--PFNEWILATGSTDKTVKLFDLR-- 304 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~l~~g~~dg~i~iwd~~-- 304 (424)
.+.-+.-+..++ +.++-+....+.|||.+.+.. ..-..+ ...+.|..+.|. |+++.+|++| ....|.+|--.
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRY 106 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccch
Confidence 344444444443 333344456799999987652 111122 346789999985 6788655555 56778887542
Q ss_pred ---CCC---Ccceee--cCCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 305 ---KIS---TALHTF--DSHK-EEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 305 ---~~~---~~~~~~--~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+.. .++..+ ..|+ .+|....|.++|. |+.|+ ++.+.|++-..
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKWL 157 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCCc
Confidence 111 233333 2333 6899999999994 44444 34688887644
No 419
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.35 E-value=5.3 Score=35.24 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=84.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee-----
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ----- 267 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~----- 267 (424)
.|+.|..+| +.++++...... .... +...|..+...+.-+.+++- .|+.++++++..-.......
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~-----~~i~--~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKP-----TRIL--KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred EEEEEECCC-EEEEEecCCccc-----eeEe--ecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccc
Confidence 688898888 889998322211 1111 23349999999877655533 35999999998644322100
Q ss_pred ------EecccCCCeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCC---C-CcceeecCCCCCEEEEEEcCCCCcEEEE
Q 014472 268 ------SVVAHQSEVNCLA--FNPFNEWILATGSTDKTVKLFDLRKI---S-TALHTFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 268 ------~~~~~~~~v~~i~--~~~~~~~~l~~g~~dg~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
........+..++ -...+...|+++. ...|.+|..... . ...+.+.. ...+..++|.++ .++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~---~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN---KICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC---EEEE
Confidence 0111223455554 2233444455444 558998888652 1 34455554 578899999832 4666
Q ss_pred EeCCCeEEEeeCCCCC
Q 014472 336 CCLGRRLMVWDLSRID 351 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~ 351 (424)
|..++ ..+.|+.++.
T Consensus 154 ~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGS 168 (275)
T ss_pred EeCCc-eEEEecCCCC
Confidence 66554 7888988654
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.25 E-value=7.4 Score=36.60 Aligned_cols=157 Identities=11% Similarity=0.107 Sum_probs=79.9
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecC---CCCceEEEEeCCCcEEEEeCCCC
Q 014472 135 PQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSK---FKEGHLLSGSDDAQICLWDINAA 211 (424)
Q Consensus 135 p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~ 211 (424)
+++...|++|+..|.++||+.......+ ....--..-..+|..|+.-+ ......++.-.-..+.||.+...
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~------~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQP------EDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCC------ccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence 4456689999999999999985522111 11211223456787777532 11222333345567778877332
Q ss_pred CCC----CcccceeeeecCC--cceeeEEeeC----CCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEe
Q 014472 212 PKN----KSLEAMQIFKVHE--GVVEDVAWHL----RHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAF 281 (424)
Q Consensus 212 ~~~----~~~~~~~~~~~~~--~~v~~i~~~~----~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 281 (424)
... ... .+.....|. .....+++-| .+...+++-+.||.+.+|+-+.-.. ..+...---.-.+.+
T Consensus 108 ~g~~~~g~~~-~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~~llPgPl~Y 182 (418)
T PF14727_consen 108 DGTVEHGNQY-QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPDFLLPGPLCY 182 (418)
T ss_pred CCCcccCcEE-EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCCCCCCcCeEE
Confidence 111 111 122222232 2223333333 2246777889999999998765321 111111111223445
Q ss_pred cCCCCeEEEEEeCCCcEEEEEC
Q 014472 282 NPFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 282 ~~~~~~~l~~g~~dg~i~iwd~ 303 (424)
.+..+ .|++++.+..+.-|..
T Consensus 183 ~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 183 CPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred eecCC-EEEEecCceeEEEecH
Confidence 55444 3556665666666543
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.23 E-value=7.2 Score=36.42 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=85.5
Q ss_pred CCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec---CC----CCeeeEEecCCCCceEEEE--eC----CCcE
Q 014472 137 NPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG---HS----TEGYGLSWSKFKEGHLLSG--SD----DAQI 203 (424)
Q Consensus 137 ~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~--~~----dg~i 203 (424)
.+++++-|-.++.|+|.|+.+.+..+. ..+.+.. +. .....+--.|+|. +++|+ .. -|-+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPR------LHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGF 159 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-E------EEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCc------eEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcE
Confidence 445566666889999999997554432 1122221 10 1112222335555 56654 22 2446
Q ss_pred EEEeCCCCCCCCcccceeeeec---CCcceeeEEeeCCCCcEEEEEe--------------------CCCeEEEEECCCC
Q 014472 204 CLWDINAAPKNKSLEAMQIFKV---HEGVVEDVAWHLRHEYLFGSVG--------------------DDQYLLIWDLRTP 260 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~~s~~--------------------~dg~i~i~d~~~~ 260 (424)
.+.|-++-. ....+.. ...--.++-|.|..+.+ +|.. ...++.+||+...
T Consensus 160 ~llD~~tf~------v~g~We~~~~~~~~gYDfw~qpr~nvM-iSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 160 VLLDGETFE------VKGRWEKDRGPQPFGYDFWYQPRHNVM-ISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp EEE-TTT--------EEEE--SB-TT------EEEETTTTEE-EE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred EEEcCcccc------ccceeccCCCCCCCCCCeEEcCCCCEE-EEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 677765432 2222222 12334677788876544 3432 2468999999986
Q ss_pred CCCCCeeEecccCC--CeeEEE--ecCCCCeEEEEEeCCCcEEEEECCCCC----CcceeecC-----------------
Q 014472 261 SVSKPVQSVVAHQS--EVNCLA--FNPFNEWILATGSTDKTVKLFDLRKIS----TALHTFDS----------------- 315 (424)
Q Consensus 261 ~~~~~~~~~~~~~~--~v~~i~--~~~~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~----------------- 315 (424)
+. ++++.--.. .+.-|. .+|...+-|+.+...++|..|--...+ +.+..+..
T Consensus 233 ~~---~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 233 KL---LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp EE---EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred cE---eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 64 555533222 233444 456566555555555555555332111 11111111
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 316 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
-..-|+.+..|.+.+.+.+++=.+|.|+-||+....
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 134579999999998777777789999999998754
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=93.03 E-value=6.6 Score=38.03 Aligned_cols=147 Identities=7% Similarity=-0.058 Sum_probs=67.6
Q ss_pred CCcEEEEEeCC--CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC---cEEEEECCCCC-Cccee
Q 014472 239 HEYLFGSVGDD--QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK---TVKLFDLRKIS-TALHT 312 (424)
Q Consensus 239 ~~~~~~s~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg---~i~iwd~~~~~-~~~~~ 312 (424)
+..+++.||.+ ..+..||..+.. ...+..+.........+.. ++.+.+.||.++ .+..||.++.. ..+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCe-EEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 34677788754 357788876543 1112122111112222222 334778887654 46788876521 11111
Q ss_pred ecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEE
Q 014472 313 FDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISS 392 (424)
Q Consensus 313 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 392 (424)
+.........+.+ ++ .+.+.|+ .+.+||..+..-. .+..+.........+. -+++ +.+.
T Consensus 394 m~~~r~~~~~~~~--~~-~IYv~GG---~~e~ydp~~~~W~------------~~~~m~~~r~~~~~~v--~~~~-IYvi 452 (480)
T PHA02790 394 TYYPHYKSCALVF--GR-RLFLVGR---NAEFYCESSNTWT------------LIDDPIYPRDNPELII--VDNK-LLLI 452 (480)
T ss_pred CCCccccceEEEE--CC-EEEEECC---ceEEecCCCCcEe------------EcCCCCCCccccEEEE--ECCE-EEEE
Confidence 1111111112222 34 4555553 4677887653211 1111111111111122 2455 7777
Q ss_pred EeCC-----CcEEEEecCCCCCC
Q 014472 393 VAED-----NILQIWQMAENIYH 410 (424)
Q Consensus 393 ~~~d-----~~i~iw~~~~~~~~ 410 (424)
||.+ ..+..||+.++.+.
T Consensus 453 GG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 453 GGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCcCCCcccceEEEEECCCCeEE
Confidence 7754 45778888877654
No 423
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.94 E-value=9.6 Score=37.03 Aligned_cols=98 Identities=7% Similarity=0.066 Sum_probs=55.3
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEE-----------------EeCCCcEEEEECC
Q 014472 242 LFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILAT-----------------GSTDKTVKLFDLR 304 (424)
Q Consensus 242 ~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~-----------------g~~dg~i~iwd~~ 304 (424)
+++.++.+|.+...|.++++..-..... ...++.+| + .+++. ...+|.+.-.|++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 4567888999999999998752221110 11223333 2 12221 1235678788887
Q ss_pred CCCCcceeecCCC--------CCE--EEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 305 KISTALHTFDSHK--------EEV--FQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 305 ~~~~~~~~~~~~~--------~~v--~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
+ ++.+-...... .+. ..+.. .+ .+|+.++.||.|..+|..++.
T Consensus 375 t-G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 375 T-GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred C-CcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCc
Confidence 7 44443333210 111 11222 23 367788899999999998874
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.90 E-value=8.4 Score=36.25 Aligned_cols=156 Identities=9% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeC---C-CCcEEEEEeCCCeEEEEECCCCCCC
Q 014472 188 KFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHL---R-HEYLFGSVGDDQYLLIWDLRTPSVS 263 (424)
Q Consensus 188 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~-~~~~~~s~~~dg~i~i~d~~~~~~~ 263 (424)
+++...+++||..|.++||+......... ..+.. ..-..+|..+..-. . ....+ +.-.-..+.||.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE-~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLE-TQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCc-cEEEE-EecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCC
Confidence 44555799999999999999965432211 11111 12356777776532 2 23344 3456678888888432211
Q ss_pred ------CCeeEecccC--CCeeEEEecCC----CCeEEEEEeCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCc
Q 014472 264 ------KPVQSVVAHQ--SEVNCLAFNPF----NEWILATGSTDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNET 331 (424)
Q Consensus 264 ------~~~~~~~~~~--~~v~~i~~~~~----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 331 (424)
..+.....|. .....++.-|. +..++++=+.||.+.+|+-+.. .....+.. ---...+.+.+..+
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~~tD- 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCPRTD- 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEeecCC-
Confidence 1122222332 33444444333 2457888999999999997651 11111221 22234567777775
Q ss_pred EEEEEeCCCeEEEeeCCC
Q 014472 332 ILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 332 ~l~s~~~dg~i~iwd~~~ 349 (424)
.|++++.+..+.-|....
T Consensus 188 sfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEecCceeEEEecHHH
Confidence 477888888888887644
No 425
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.87 E-value=1.6 Score=35.63 Aligned_cols=32 Identities=13% Similarity=0.439 Sum_probs=26.9
Q ss_pred CcceEEeCCCC-----CcEEEEEeCCCcEEEEecCCC
Q 014472 376 KISDFSWNPCE-----DWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 ~v~~~~~~~~~-----~~~l~s~~~d~~i~iw~~~~~ 407 (424)
.|.+++|||.| +.+|++...++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 68899999953 568999999999999998743
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.65 E-value=9.2 Score=40.53 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=87.4
Q ss_pred cCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEe--------cCCCCceEE
Q 014472 124 HDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSW--------SKFKEGHLL 195 (424)
Q Consensus 124 h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~~~~l~ 195 (424)
|...=..+-+-|.=.+.-+ +.|..+.+|++.+... ...+.+-...|..|.. .|.=+.+|+
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e----------~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLv 144 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNE----------LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLV 144 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCc----------cccccchhhhheeeeeecCCCCcchhhhheeEE
Confidence 3333344555554332333 4588999999988322 2223333334444443 222232333
Q ss_pred EEeCCCcEEEEeCCCCCCCCc---ccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC----CCCC----CC-
Q 014472 196 SGSDDAQICLWDINAAPKNKS---LEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL----RTPS----VS- 263 (424)
Q Consensus 196 s~~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~----~~~~----~~- 263 (424)
.+ .--.|.++-+.-...... +.....+......|+++....+|+ +|. +|.||. +|.+ ..+- +.
T Consensus 145 va-T~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~--lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 145 VA-TPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFF-AGRDGN--LYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred ec-ccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEE-eecCCC--EEEEEEeccCchhhccccc
Confidence 33 334566654432221111 101111222356788999777775 663 456664 4433 1110 00
Q ss_pred ------------CCeeEec-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014472 264 ------------KPVQSVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS 307 (424)
Q Consensus 264 ------------~~~~~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 307 (424)
..+..+. .+..+|..|+.+.... ++.+-+..|+|.+||+...+
T Consensus 220 iclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 220 ICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence 0112223 5677999999987655 89999999999999997633
No 427
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.61 E-value=7 Score=36.35 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=53.6
Q ss_pred cceeeEEeeCCCCcEEEEEe-----------CCC-eEEEEECCCCC-CCCCeeEecccCCCeeEEEecCCCCeEEEEEeC
Q 014472 228 GVVEDVAWHLRHEYLFGSVG-----------DDQ-YLLIWDLRTPS-VSKPVQSVVAHQSEVNCLAFNPFNEWILATGST 294 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s~~-----------~dg-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~ 294 (424)
.....|+|.++++ ++++-. ..+ .|.+++-..+. .......+...-...+.|++.+++ ++++ ..
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 3456788888886 544431 223 67766544322 111223333333456889998876 4544 33
Q ss_pred CCcEEEEECCCCC----C--cc-eeecC----CCCCEEEEEEcCCCCcEEEEE
Q 014472 295 DKTVKLFDLRKIS----T--AL-HTFDS----HKEEVFQVGWNPKNETILASC 336 (424)
Q Consensus 295 dg~i~iwd~~~~~----~--~~-~~~~~----~~~~v~~~~~sp~~~~~l~s~ 336 (424)
....++.|..... + .+ ..+.. +......++|.|+|..++..+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4333343543211 1 11 12222 234578899999996333333
No 428
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.49 E-value=6.6 Score=34.07 Aligned_cols=203 Identities=8% Similarity=0.020 Sum_probs=111.8
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.-..|+-.|+|. .-+++...|.|--.|..+++. ...--+.......|..-|++..-| +-+.. -|.-.|-++
T Consensus 63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev------~~ypLg~Ga~Phgiv~gpdg~~Wi-td~~~-aI~R~dpkt 133 (353)
T COG4257 63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEV------ETYPLGSGASPHGIVVGPDGSAWI-TDTGL-AIGRLDPKT 133 (353)
T ss_pred CccccccCCCCc-eEEecCccccceecCCCCCce------EEEecCCCCCCceEEECCCCCeeE-ecCcc-eeEEecCcc
Confidence 446677778776 677777777777777777632 111123344556777788886444 32222 455566655
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCC-CCCEEEEEEcCCCCcEEEEEeC
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH-KEEVFQVGWNPKNETILASCCL 338 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~l~s~~~ 338 (424)
.+...................|++.|. +-+++. .|.---.|.. ...+.++... ...-..++-.|+|+ +.++.-.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 442111111122345688899999987 666765 2221111111 2233444332 34567889999997 5556556
Q ss_pred CCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 339 GRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 339 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
+..|-..|...+..+ .+-.-.+....-..+--+|.+. +-+|....+.+..+|.+...+
T Consensus 209 gnaiaridp~~~~ae------------v~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 209 GNAIARIDPFAGHAE------------VVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred ccceEEcccccCCcc------------eecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccccc
Confidence 666777776655321 1111112112234444466676 566666677777777765543
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=2.1 Score=40.42 Aligned_cols=87 Identities=21% Similarity=0.333 Sum_probs=50.3
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccC-------CCCCeeeEEEcCCCCCcceEEeCCCC--CcE
Q 014472 319 EVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE-------DGPPELLFIHGGHTSKISDFSWNPCE--DWV 389 (424)
Q Consensus 319 ~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~ 389 (424)
.|..+..++.|. .++-.+.+|.+.++=.+..+......+.. .+-...+++... .-.+..++|+|+. .-.
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~-~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSST-SLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCC-ceeeeeccccCCccCCce
Confidence 577888999996 56777778855544333333322221110 000112222222 2347788999986 224
Q ss_pred EEEEeCCCcEEEEecCCC
Q 014472 390 ISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 390 l~s~~~d~~i~iw~~~~~ 407 (424)
|..-+.|+.|++|+++..
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 555567999999999864
No 430
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.23 E-value=9.4 Score=35.21 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=74.6
Q ss_pred eEEecCCCCceEEEEeCCCc--EEEEeCCCCCCCCcccceeeeecCC-cceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 183 GLSWSKFKEGHLLSGSDDAQ--ICLWDINAAPKNKSLEAMQIFKVHE-GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 183 ~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.=+|.++|..+|+++..||. +.+.|+.++. +..+.... .......++|+++.++. ......|+-.|+++
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------i~QLTdg~g~~~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T 111 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGE-------ITQLTDGPGDNTFGGFLSPDDRALYY-VKNGRSLRRVDLDT 111 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------EEE---SS-B-TTT-EE-TTSSEEEE-EETTTEEEEEETTT
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCE-------EEECccCCCCCccceEEecCCCeEEE-EECCCeEEEEECCc
Confidence 34678888877777777776 4555666542 22222222 22335667788876654 44557899999998
Q ss_pred CCCCCCeeEecccCCCeeEEEe--cCCCCeEEEEEeC-----------------------CCcEEEEECCCCCCcceeec
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAF--NPFNEWILATGST-----------------------DKTVKLFDLRKISTALHTFD 314 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~~g~~-----------------------dg~i~iwd~~~~~~~~~~~~ 314 (424)
.+. ...+......+-...| +.++.. + +|.. ...|.-.|+++ ++. ..+.
T Consensus 112 ~e~---~~vy~~p~~~~g~gt~v~n~d~t~-~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-G~~-~~v~ 184 (386)
T PF14583_consen 112 LEE---RVVYEVPDDWKGYGTWVANSDCTK-L-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-GER-KVVF 184 (386)
T ss_dssp --E---EEEEE--TTEEEEEEEEE-TTSSE-E-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---E-EEEE
T ss_pred CcE---EEEEECCcccccccceeeCCCccE-E-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-Cce-eEEE
Confidence 663 2223333444444555 334442 2 2211 12344456665 333 3333
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeC---CCe-EEEeeCCCC
Q 014472 315 SHKEEVFQVGWNPKNETILASCCL---GRR-LMVWDLSRI 350 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~~~l~s~~~---dg~-i~iwd~~~~ 350 (424)
.....+.-+.|+|..+.+|+-|-. +.. -+||-++..
T Consensus 185 ~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 185 EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 346678899999998887777654 221 366766543
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.87 E-value=7.1 Score=33.04 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=78.3
Q ss_pred CcceeeEEeeCCCCcEEEEEeC--------CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcE
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGD--------DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTV 298 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~--------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i 298 (424)
..+.++-..+|+|++...+-+. .|.++.|-.... +..+...-..-+.++|+.+.+.+.++-+.+-.|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 4566777889999863222222 234444433221 112222234457789998887666677777778
Q ss_pred EEEECCCC-C-----CcceeecC----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeE
Q 014472 299 KLFDLRKI-S-----TALHTFDS----HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF 368 (424)
Q Consensus 299 ~iwd~~~~-~-----~~~~~~~~----~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 368 (424)
.-||..-. + +.+..++. ..-..-.++....| .+.+++-..++|...|..+++ ++.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK--------------~L~ 247 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGK--------------ILL 247 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCc--------------EEE
Confidence 77773321 1 11222221 01111234445566 467777788899999998874 344
Q ss_pred EEcCCCCCcceEEeCCC
Q 014472 369 IHGGHTSKISDFSWNPC 385 (424)
Q Consensus 369 ~~~~h~~~v~~~~~~~~ 385 (424)
.+.-....|++++|--.
T Consensus 248 eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 248 EIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEcCCCceEEEEecCC
Confidence 44444677999999643
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.24 E-value=0.024 Score=52.21 Aligned_cols=148 Identities=9% Similarity=0.115 Sum_probs=98.1
Q ss_pred ceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC
Q 014472 229 VVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST 308 (424)
Q Consensus 229 ~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 308 (424)
......|-+.+.++ +.++.+..+..||-..... .. ...++....++|+.+++.+++.+-..+.+.+||+.+...
T Consensus 36 ~pi~~~w~~e~~nl-avaca~tiv~~YD~agq~~----le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNL-AVACANTIVIYYDKAGQVI----LE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred ccceeeEecCCCce-ehhhhhhHHHhhhhhccee----cc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 34456788887775 5777888888998654321 11 123456677889988887777788889999999986322
Q ss_pred cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCc
Q 014472 309 ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW 388 (424)
Q Consensus 309 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 388 (424)
.-..+.+ ...-.-+.|++..+ .++.+...|.+.|++.... +.+.....|...++.++|.+.+.
T Consensus 110 qqLE~gg-~~s~sll~wsKg~~-el~ig~~~gn~viynhgts--------------R~iiv~Gkh~RRgtq~av~lEd~- 172 (615)
T KOG2247|consen 110 QQLESGG-TSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTS--------------RRIIVMGKHQRRGTQIAVTLEDY- 172 (615)
T ss_pred HHHhccC-cchHHHHhhccCCc-cccccccccceEEEeccch--------------hhhhhhcccccceeEEEecccce-
Confidence 2112221 22222378999886 5778888899999998763 22333344888899999998876
Q ss_pred EEEEEeCCCcEE
Q 014472 389 VISSVAEDNILQ 400 (424)
Q Consensus 389 ~l~s~~~d~~i~ 400 (424)
.+.++.|..+.
T Consensus 173 -vil~dcd~~L~ 183 (615)
T KOG2247|consen 173 -VILCDCDNTLS 183 (615)
T ss_pred -eeecCcHHHHH
Confidence 44455555443
No 433
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.23 E-value=10 Score=33.75 Aligned_cols=158 Identities=11% Similarity=0.166 Sum_probs=78.2
Q ss_pred CCcceeeEEeeCCC-----CcEEEEEeCCCeEEEEECCCCCCCCCeeE----------e------cccCCCeeEEEecC-
Q 014472 226 HEGVVEDVAWHLRH-----EYLFGSVGDDQYLLIWDLRTPSVSKPVQS----------V------VAHQSEVNCLAFNP- 283 (424)
Q Consensus 226 ~~~~v~~i~~~~~~-----~~~~~s~~~dg~i~i~d~~~~~~~~~~~~----------~------~~~~~~v~~i~~~~- 283 (424)
..+.++++++.... .+.+++=...+-|.|+|+.+++..+.... + ......+..++.+|
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 35678888887633 24555555667899999998653211100 0 01123366666655
Q ss_pred --CCCeEEEEEeCCCcEEEEE---CCCCCC--------cceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 284 --FNEWILATGSTDKTVKLFD---LRKIST--------ALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 284 --~~~~~l~~g~~dg~i~iwd---~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+++.+....-....++--. +++... .+..+-........++.+++| .++++--..+.|..|+....
T Consensus 139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp STTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEECCCTEEEEEETTTS
T ss_pred CCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCC
Confidence 5544333322222222222 122110 112221112466788899988 47778888889999998762
Q ss_pred CcccCCCccCCCCCeeeEEEcCCCCCcceEEeCC--CCCcEEEEE
Q 014472 351 DEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNP--CEDWVISSV 393 (424)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~ 393 (424)
-.... ...+..-...-..+.++++.+ +|. +.+.+
T Consensus 218 ~~~~~--------~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~s 253 (287)
T PF03022_consen 218 YTPEN--------FEILAQDPRTLQWPDGLKIDPEGDGY-LWVLS 253 (287)
T ss_dssp B-GCC--------EEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred cCccc--------hheeEEcCceeeccceeeeccccCce-EEEEE
Confidence 21110 122322222134677888888 776 45544
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.22 E-value=8.4 Score=32.62 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=67.7
Q ss_pred cceeeEEeeCCCCcEEEEEeCCCeEEEEE--CCCCCCCCC--eeEecc---cC-CCeeEEEecCCCCeEEEEEeCCCcEE
Q 014472 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWD--LRTPSVSKP--VQSVVA---HQ-SEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s~~~dg~i~i~d--~~~~~~~~~--~~~~~~---~~-~~v~~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
.--+.++|+.+.+.+..+-+.+-.|.-|| ..++....+ +..++. .. -..-.++....|. +.++.-..++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEE
Confidence 34467899988888877878888887787 555543222 222211 01 1122344455565 677777788999
Q ss_pred EEECCCCCCcceeecCCCCCEEEEEEcCC
Q 014472 300 LFDLRKISTALHTFDSHKEEVFQVGWNPK 328 (424)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~v~~~~~sp~ 328 (424)
.+|..+ ++.+.++......|++++|--.
T Consensus 237 ~~dp~t-GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTT-GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EECCCC-CcEEEEEEcCCCceEEEEecCC
Confidence 999998 7888899888999999999643
No 435
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.20 E-value=21 Score=37.15 Aligned_cols=112 Identities=12% Similarity=0.207 Sum_probs=63.4
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+..|...++| +| ....+++||+-+ +++++.... -...|+++++.-. + ++.|...-.+.++..+....
T Consensus 939 ~Ai~~f~~~~L-ag-vG~~l~~YdlG~-K~lLRk~e~k~~p~~Is~iqt~~~--R-I~VgD~qeSV~~~~y~~~~n---- 1008 (1205)
T KOG1898|consen 939 GAICPFQGRVL-AG-VGRFLRLYDLGK-KKLLRKCELKFIPNRISSIQTYGA--R-IVVGDIQESVHFVRYRREDN---- 1008 (1205)
T ss_pred eEEeccCCEEE-Ee-cccEEEEeeCCh-HHHHhhhhhccCceEEEEEeecce--E-EEEeeccceEEEEEEecCCC----
Confidence 45567676544 33 456899999987 455444332 2456778877532 3 55555444566655544321
Q ss_pred CccCCCCCeeeE-EEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 357 EDAEDGPPELLF-IHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 357 ~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
+++. .-..-...|+.+.+-..+. ++.+..=|.+.+-++.....+
T Consensus 1009 --------~l~~fadD~~pR~Vt~~~~lD~~t--vagaDrfGNi~~vR~P~d~~e 1053 (1205)
T KOG1898|consen 1009 --------QLIVFADDPVPRHVTALELLDYDT--VAGADRFGNIAVVRIPPDVSE 1053 (1205)
T ss_pred --------eEEEEeCCCccceeeEEEEecCCc--eeeccccCcEEEEECCCcchh
Confidence 2221 1122233466666655554 677777788888777665443
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.04 E-value=3 Score=33.96 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=25.3
Q ss_pred CeeeEEecCCC-----CceEEEEeCCCcEEEEeCCC
Q 014472 180 EGYGLSWSKFK-----EGHLLSGSDDAQICLWDINA 210 (424)
Q Consensus 180 ~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~ 210 (424)
.+.+++|||.| ..+|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999964 33688889999999998653
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.04 E-value=11 Score=33.48 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=115.4
Q ss_pred ceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEec-----CCCCeeeEEecCCCC----------
Q 014472 127 EVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRG-----HSTEGYGLSWSKFKE---------- 191 (424)
Q Consensus 127 ~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~---------- 191 (424)
.-..|+++|.+. +-++....+...+||........ .......++.. .....+.+.|+....
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g---~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPL---VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccC---CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 345799999887 56666778899999987321110 00111222221 224567777764321
Q ss_pred -ceEEEEeCCCcEEEEeCCCCCCCCcccceeeee-cCCccee-eEEee--CCCCcEEEEEeCCCeEEEEECCCCCCCCCe
Q 014472 192 -GHLLSGSDDAQICLWDINAAPKNKSLEAMQIFK-VHEGVVE-DVAWH--LRHEYLFGSVGDDQYLLIWDLRTPSVSKPV 266 (424)
Q Consensus 192 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~-~i~~~--~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~ 266 (424)
..++.+++||+|.-|...-....-. .....+. ...+.|. .+++. ..+..|+++--..++|.|||-.-.....+
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~- 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP- 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence 2367789999999998644322000 0111111 1123332 34443 34567777777889999998653221000
Q ss_pred eEe-----cccCCC-----------eeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecC--CCCCEEEEEEcCC
Q 014472 267 QSV-----VAHQSE-----------VNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDS--HKEEVFQVGWNPK 328 (424)
Q Consensus 267 ~~~-----~~~~~~-----------v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~sp~ 328 (424)
..+ ..--.+ |+-..-++... -=+.|-.-|.|-+||+. +..++.+.. .-..-+.++..|.
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChh
Confidence 000 000000 11111122111 12223344789999987 466666632 2234566776552
Q ss_pred -----CCcEEEEEeCCCeEEEeeCCCCC
Q 014472 329 -----NETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 329 -----~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
...+|+.--.||+|..||..++.
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 22477777779999999998764
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=90.44 E-value=14 Score=33.83 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=81.4
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEE-eCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcE
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVF-DYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQI 203 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 203 (424)
.+.++++.+.|++. ++++| ..|.+..- +-.. ..+... ...-...++++.+.+++. ++++ +..|.+
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg--------~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~ 237 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQ--------TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQI 237 (334)
T ss_pred cceEEEEEECCCCe-EEEEe-CCceEEEEcCCCC--------CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEE
Confidence 45688899998764 56654 45655432 2111 012111 122345788999998776 4444 556766
Q ss_pred EEEeCCCCCCCCcccceeee-ecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEec
Q 014472 204 CLWDINAAPKNKSLEAMQIF-KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFN 282 (424)
Q Consensus 204 ~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 282 (424)
.+=..+.+. .++....- ......+.++.+.+++. ++ .++.+|.+. .....++....+.....-....+.+.|.
T Consensus 238 ~~~s~d~G~---sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~ 311 (334)
T PRK13684 238 RFNDPDDLE---SWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL 311 (334)
T ss_pred EEccCCCCC---ccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe
Confidence 532233331 11111100 01123577888988764 55 455677665 3444444322221111223457778877
Q ss_pred CCCCeEEEEEeCCCcEEEEEC
Q 014472 283 PFNEWILATGSTDKTVKLFDL 303 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~ 303 (424)
..+. .++ .+..|.|--|+-
T Consensus 312 ~~~~-~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEK-GFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCc-eEE-ECCCceEEEecC
Confidence 6565 455 456788877653
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.94 E-value=11 Score=31.67 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=62.7
Q ss_pred CcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeC-C--C---cEEEE-ECCC---CCCc
Q 014472 240 EYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGST-D--K---TVKLF-DLRK---ISTA 309 (424)
Q Consensus 240 ~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~-d--g---~i~iw-d~~~---~~~~ 309 (424)
..+|++ .....|.+|++.... ..++..+.. -+.|..+.++..|++ ++|--. . . .+|+| +.|. ...+
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~-~~~~~~F~T-v~~V~~l~y~~~GDY-lvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEE-CPLLCTFST-VGRVLQLVYSEAGDY-LVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCC-CceeEEEcc-hhheeEEEeccccce-EEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 446544 566789999999443 345556554 478999999999996 555322 1 1 45665 2221 1122
Q ss_pred ce-eecC---------------------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 310 LH-TFDS---------------------HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 310 ~~-~~~~---------------------~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
+. .+-+ -+.++.+++..|....++ .|+ ++++.||.+...
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence 22 1111 134677888888666644 444 457999988654
No 440
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.93 E-value=1.6 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.354 Sum_probs=22.2
Q ss_pred CCCcceEEeCCCCCcEEEEEeCC--CcEEEE
Q 014472 374 TSKISDFSWNPCEDWVISSVAED--NILQIW 402 (424)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~~~d--~~i~iw 402 (424)
...-....|+|||++++.++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567789999999888888887 777777
No 441
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.73 E-value=1.9 Score=24.83 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEe
Q 014472 315 SHKEEVFQVGWNPKNETILASCCLG--RRLMVW 345 (424)
Q Consensus 315 ~~~~~v~~~~~sp~~~~~l~s~~~d--g~i~iw 345 (424)
.....-....|+|+|+.++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999999888888887 776666
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=14 Score=39.33 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=30.4
Q ss_pred EEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCC
Q 014472 119 IQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSK 157 (424)
Q Consensus 119 ~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~ 157 (424)
..+.+.+.....++|.|... ++|.|..+|.|++|-...
T Consensus 29 ~~~~G~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 29 TNRHGFPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred ceecCCCCCCcceeeccccc-eEEEEEecccEEEecccc
Confidence 34455566778899999775 999999999999998765
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.60 E-value=9 Score=35.00 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=56.5
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeecCCcceeeEEeeCC---CCcEEEEEeCC------
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKVHEGVVEDVAWHLR---HEYLFGSVGDD------ 249 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~---~~~~~~s~~~d------ 249 (424)
..++|+|.|++. ++++...|.|.+++. .+.....+..+ ............++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 357899999875 555677999999993 33211111111 112334567889999994 34555554422
Q ss_pred --CeEEEEECCCCCC-C---CCe-eEecc---cCCCeeEEEecCCCCeEEEEEeC
Q 014472 250 --QYLLIWDLRTPSV-S---KPV-QSVVA---HQSEVNCLAFNPFNEWILATGST 294 (424)
Q Consensus 250 --g~i~i~d~~~~~~-~---~~~-~~~~~---~~~~v~~i~~~~~~~~~l~~g~~ 294 (424)
..|.-|....... . +.+ ..... .......|+|.|++. |.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 2344444433210 0 011 11121 234567799999996 4555443
No 444
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.50 E-value=28 Score=35.98 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=99.6
Q ss_pred CeeeEEecCCCCceEEEEe----------CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCC
Q 014472 180 EGYGLSWSKFKEGHLLSGS----------DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDD 249 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~d 249 (424)
.+.++.|..+...++++|. ..|.|.++.+... .+++.+.... -.+.+.++..- +| .++ ++-+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---~~L~~v~e~~-v~Gav~aL~~f-ng-kll--A~In 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---NSLELVAETV-VKGAVYALVEF-NG-KLL--AGIN 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---Cceeeeeeee-eccceeehhhh-CC-eEE--EecC
Confidence 3555568777555777764 2477888887663 2222222222 23455555432 23 354 3467
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcc--eeecCCCCCEEEEEEcC
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTAL--HTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~sp 327 (424)
..|++|+....+. ++.-..+..++..+...-.+. .+++|..-+++.+.-.+...... ..-..+..+++++.+-.
T Consensus 848 ~~vrLye~t~~~e---Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 848 QSVRLYEWTTERE---LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred cEEEEEEccccce---ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 8899999988643 444456778888888888887 58899988888887766533222 22235677888888877
Q ss_pred CCCcEEEEEeCCCeEEEeeCCC
Q 014472 328 KNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
+.. ++.+..+|.+.+-...+
T Consensus 924 ~d~--ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 924 DDT--YLGAENSGNLFTVRKDS 943 (1096)
T ss_pred Cce--EEeecccccEEEEEecC
Confidence 653 55667788888776654
No 445
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.43 E-value=23 Score=34.82 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=34.0
Q ss_pred eEEEEECCCCCCCCCeeEecccC-------CCeeEEEecCCCC--eEEEEEeCCCcEEEEECCCCCCcc
Q 014472 251 YLLIWDLRTPSVSKPVQSVVAHQ-------SEVNCLAFNPFNE--WILATGSTDKTVKLFDLRKISTAL 310 (424)
Q Consensus 251 ~i~i~d~~~~~~~~~~~~~~~~~-------~~v~~i~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~ 310 (424)
+|.-.|+++++..-..+. ..|. ....-+....+|+ .+++.+..+|.+.+.|.++ ++++
T Consensus 272 s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t-G~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN-GKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC-Ccee
Confidence 566778887774222221 1121 1122223333454 5788999999999999987 5553
No 446
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.37 E-value=14 Score=32.21 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=104.2
Q ss_pred cEEEEEEeccCC--ceeEEEecCCCCcEEEEEecCC--eEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC
Q 014472 115 KVQIIQQINHDG--EVNRARYMPQNPFLIATKTVSA--EVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~--~v~~i~~~p~~~~~latg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
.+++++..+|.. -...+.|..++. ++-+.+.-| .|+.+|+.+ +.......+.. .--.-+++.. +
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~t--------g~~~~~~~l~~-~~FgEGit~~--~ 99 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLET--------GKVLQSVPLPP-RYFGEGITIL--G 99 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTT--------SSEEEEEE-TT-T--EEEEEEE--T
T ss_pred eeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCC--------CcEEEEEECCc-cccceeEEEE--C
Confidence 467888899875 455688866665 566655555 788888877 21111112221 1112334433 2
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
..+..-.-.++...+||..+- +.+..+. ..+.=+.++ .++..++.| .....|+++|..+-+..+.+...
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~- 168 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFKEVRTIQVT- 168 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-E-
T ss_pred CEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEE--cCCCEEEEE-CCccceEEECCcccceEEEEEEE-
Confidence 334555567788999999754 3334443 234556666 456667644 44567899998765432222211
Q ss_pred ccC---CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec---------------CCCCCEEEEEEcCCCCcE
Q 014472 271 AHQ---SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---------------SHKEEVFQVGWNPKNETI 332 (424)
Q Consensus 271 ~~~---~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~~ 332 (424)
... ..++-+.|- +| .+.|-.=....|...|..+ +..+..+. ....-.+.++|.|..+.+
T Consensus 169 ~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 169 DNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp ETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEE
T ss_pred ECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEE
Confidence 112 234556665 23 3555555555666667666 44433321 113457999999998888
Q ss_pred EEEEe
Q 014472 333 LASCC 337 (424)
Q Consensus 333 l~s~~ 337 (424)
++||-
T Consensus 246 ~vTGK 250 (264)
T PF05096_consen 246 FVTGK 250 (264)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 88873
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.89 E-value=29 Score=35.37 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCC-CC-C------CCcccceee------e-ecCCcceeeEEeeCCC--C
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINA-AP-K------NKSLEAMQI------F-KVHEGVVEDVAWHLRH--E 240 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-~~-~------~~~~~~~~~------~-~~~~~~v~~i~~~~~~--~ 240 (424)
...|..|..+|+|. +|+..+..|. .|-.+-. .. . ...+.+... + ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 34688999999998 5766666554 4444421 10 0 011111110 1 1245688999999974 2
Q ss_pred cEEEEEeCCCeEEEEECCCCCC
Q 014472 241 YLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 241 ~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
..++.-..|+++++||+.....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCC
Confidence 3445778899999999976543
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.22 E-value=11 Score=35.91 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=48.9
Q ss_pred CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCC--------Ccc---ee-------ec-CCCCCEEEEEEcCCC--CcEE
Q 014472 275 EVNCLAFNPFNEWILATGSTDKTVKLFDLRKIS--------TAL---HT-------FD-SHKEEVFQVGWNPKN--ETIL 333 (424)
Q Consensus 275 ~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------~~~---~~-------~~-~~~~~v~~~~~sp~~--~~~l 333 (424)
.|..+..++.|. .++-.+.+|.+.++=.+..+ ++. ++ +. ...-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 467788888888 46666677766554333222 111 00 00 112356788999987 4567
Q ss_pred EEEeCCCeEEEeeCCCCCc
Q 014472 334 ASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 334 ~s~~~dg~i~iwd~~~~~~ 352 (424)
..-+.|..|++|++....+
T Consensus 184 ~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEecCcEEEEEecCCcch
Confidence 7788899999999987543
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=15 Score=30.57 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=90.7
Q ss_pred cEEEEEEeccCCcee--EEEecCCCCcEEEEEecC--CeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCC
Q 014472 115 KVQIIQQINHDGEVN--RARYMPQNPFLIATKTVS--AEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFK 190 (424)
Q Consensus 115 ~~~~~~~~~h~~~v~--~i~~~p~~~~~latg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 190 (424)
..+++++.+|...-. .+.+. +.+++.+.+.- ..|++||+... +......+. ...+.+=-...-+
T Consensus 33 ~~evi~~yphDs~sfTQGL~~~--~g~i~esTG~yg~S~ir~~~L~~g--------q~~~s~~l~--~~~~FgEGit~~g 100 (262)
T COG3823 33 VYEVIRTYPHDSTSFTQGLEYL--DGHILESTGLYGFSKIRVSDLTTG--------QEIFSEKLA--PDTVFGEGITKLG 100 (262)
T ss_pred ceEEEEeccCchhhhhcceeee--CCEEEEeccccccceeEEEeccCc--------eEEEEeecC--Cccccccceeecc
Confidence 346777888875433 33333 33566655433 47999999861 111111111 1111110011112
Q ss_pred CceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEec
Q 014472 191 EGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVV 270 (424)
Q Consensus 191 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~ 270 (424)
..+.+-.-.+|....+|.++-+... .+. ..+.=+.++ .++.+++ .+....+++.-|..+-.....+...
T Consensus 101 d~~y~LTw~egvaf~~d~~t~~~lg------~~~-y~GeGWgLt--~d~~~Li-msdGsatL~frdP~tfa~~~~v~VT- 169 (262)
T COG3823 101 DYFYQLTWKEGVAFKYDADTLEELG------RFS-YEGEGWGLT--SDDKNLI-MSDGSATLQFRDPKTFAELDTVQVT- 169 (262)
T ss_pred ceEEEEEeccceeEEEChHHhhhhc------ccc-cCCcceeee--cCCcceE-eeCCceEEEecCHHHhhhcceEEEE-
Confidence 2233344567788888887653322 222 233444554 3455565 4444556666666553332222221
Q ss_pred ccCC---CeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcce------------eecCCCCCEEEEEEcCCCCcEEEE
Q 014472 271 AHQS---EVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALH------------TFDSHKEEVFQVGWNPKNETILAS 335 (424)
Q Consensus 271 ~~~~---~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~~l~s 335 (424)
.... .++-+.|-. |. +.|-.-.+..|...|..+ ++.+. .-..|..-.+.+++.|++..++++
T Consensus 170 ~~g~pv~~LNELE~Vd-G~-lyANVw~t~~I~rI~p~s-GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 170 DDGVPVSKLNELEWVD-GE-LYANVWQTTRIARIDPDS-GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ECCeecccccceeeec-cE-EEEeeeeecceEEEcCCC-CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 1111 223333332 32 333333333333333333 22222 222345567889999988777777
Q ss_pred E
Q 014472 336 C 336 (424)
Q Consensus 336 ~ 336 (424)
|
T Consensus 247 G 247 (262)
T COG3823 247 G 247 (262)
T ss_pred c
Confidence 6
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.38 E-value=23 Score=32.32 Aligned_cols=215 Identities=14% Similarity=0.142 Sum_probs=108.9
Q ss_pred CCeeeEEecCCCCceEEEEeCCCc------EEEEeCCCCC-CCCcccc--eeeeecCC--------cceeeEEeeCCCCc
Q 014472 179 TEGYGLSWSKFKEGHLLSGSDDAQ------ICLWDINAAP-KNKSLEA--MQIFKVHE--------GVVEDVAWHLRHEY 241 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~------i~vwd~~~~~-~~~~~~~--~~~~~~~~--------~~v~~i~~~~~~~~ 241 (424)
+.+.+|.+.+.+. .+++.+.+|. +..+++.... ....+.. ...+..-. -...+|++.+++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 4578899987555 5777777777 6666665411 1111111 11111111 1445788866664
Q ss_pred EEEEEeCC------CeEEEEECCCCCCCCCe---eEe---------cccCCCeeEEEecCCCCeEEEEEeC-----CC--
Q 014472 242 LFGSVGDD------QYLLIWDLRTPSVSKPV---QSV---------VAHQSEVNCLAFNPFNEWILATGST-----DK-- 296 (424)
Q Consensus 242 ~~~s~~~d------g~i~i~d~~~~~~~~~~---~~~---------~~~~~~v~~i~~~~~~~~~l~~g~~-----dg-- 296 (424)
++++.-.+ ..|..++.. +.....+ ..+ ...+....+|+++|+|..++ ++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~-~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF-AAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE-EEECccccCCCcc
Confidence 55455455 678888866 3322111 111 12346789999999998544 3332 22
Q ss_pred c-------EEEE--ECCCCCCccee----ecC-----CCCCEEEEEEcCCCCcEEEEE-e----CCCeEEEeeCCCCCc-
Q 014472 297 T-------VKLF--DLRKISTALHT----FDS-----HKEEVFQVGWNPKNETILASC-C----LGRRLMVWDLSRIDE- 352 (424)
Q Consensus 297 ~-------i~iw--d~~~~~~~~~~----~~~-----~~~~v~~~~~sp~~~~~l~s~-~----~dg~i~iwd~~~~~~- 352 (424)
. ++++ |..+.+.+... +.. ....|+.+.+-++++ +|+.= + ....++|+.+.....
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~at 254 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSDAT 254 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccccc
Confidence 1 4454 44432222222 221 356789999999997 44322 2 234566665543221
Q ss_pred -ccCCCcc-----CCCCCeeeEEEcC---CCCCcceEEeCC--CCCcEEEEEeCCCc
Q 014472 353 -EQTPEDA-----EDGPPELLFIHGG---HTSKISDFSWNP--CEDWVISSVAEDNI 398 (424)
Q Consensus 353 -~~~~~~~-----~~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~~l~s~~~d~~ 398 (424)
....... .....++++.+.. ....+-.++|.| ++...|+..++|+.
T Consensus 255 ~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 255 DVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred ccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 1111000 0111223322222 144577889976 56655666666664
No 451
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.17 E-value=9.6 Score=40.41 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=79.3
Q ss_pred eCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEe--------eCCCCcEEEEEeCCCeEEEEECC----CCCCCCC
Q 014472 198 SDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAW--------HLRHEYLFGSVGDDQYLLIWDLR----TPSVSKP 265 (424)
Q Consensus 198 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~--------~~~~~~~~~s~~~dg~i~i~d~~----~~~~~~~ 265 (424)
+.|..+.+|+.+++... ..+.+....|..+.. .|.=+++++.+. --.|.++-+. +......
T Consensus 96 TiDn~L~lWny~~~~e~------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCcc------ccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccc
Confidence 45788999999885332 222333334444432 232334443332 3445555433 2211000
Q ss_pred --eeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC----------C-------------Ccceeec-CCCCC
Q 014472 266 --VQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI----------S-------------TALHTFD-SHKEE 319 (424)
Q Consensus 266 --~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~----------~-------------~~~~~~~-~~~~~ 319 (424)
...+......|+|+....+|+ +|.+ |.|| .+|.+--. . ..+..+. .+..+
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENGR-IFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccceeeecCCceEEEEEeccCCc-EEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 011222355788999777776 5555 4566 44443110 0 0022223 56779
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCC
Q 014472 320 VFQVGWNPKNETILASCCLGRRLMVWDLSRID 351 (424)
Q Consensus 320 v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~ 351 (424)
|..+...... .++.+-+..|+|.+|++...+
T Consensus 245 I~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 245 IRQITIDNSR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence 9999998766 589999999999999998743
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.09 E-value=2.8 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCCCcceeecC
Q 014472 283 PFNEWILATGSTDKTVKLFDLRKISTALHTFDS 315 (424)
Q Consensus 283 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 315 (424)
|++++++++...++.|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 56777777777789999999976 555555554
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.01 E-value=4.4 Score=37.65 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=86.7
Q ss_pred cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCC----Cee-EEEecCCCCeEEEEEeCCCcEE
Q 014472 225 VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQS----EVN-CLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 225 ~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~v~-~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
.....+..+-..|+++.+.+-.+ ..+.++++.+.... .........+ .|+ .+..-. |..-+.+++.||.|.
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~-~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vs 293 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQ-IRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVS 293 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC--CeEEEEeecccccc-hhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCcee
Confidence 34456777888999987765433 67888888764421 0111111111 122 111122 333577888899887
Q ss_pred EE-ECCCCCCcc----eeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCC
Q 014472 300 LF-DLRKISTAL----HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHT 374 (424)
Q Consensus 300 iw-d~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 374 (424)
-| |.|..+.+- +.++....++.-+.-..+. .-+++-...|++.++.....+ .+++.- --
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~-------------~lL~~~--~~ 357 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEK-------------LLLFER--AY 357 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeecccCc-------------ceehhh--hh
Confidence 65 777644331 1222222233322222222 356677777877777654321 222211 12
Q ss_pred CCcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 375 SKISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
..+.-++++|.+.+ +++ -+.|.++++.+++.
T Consensus 358 ~~~~~~~~Sp~~~~-Ll~-e~~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSPNQAY-LLS-EDQGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCcccch-hee-ecCCceEEEEecCC
Confidence 24667899999996 444 35678999998765
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=86.85 E-value=25 Score=32.21 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=81.1
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEEC
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDL 257 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~ 257 (424)
...+.++.+.+++. ++..+..|.+..- .+.+. ..+..+ ...-...++++.+.++++ ++++ +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~--~v~~g~~G~i~~s-~~~gg--~tW~~~--~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGK--YVAVSSRGNFYST-WEPGQ--TAWTPH--QRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCe--EEEEeCCceEEEE-cCCCC--CeEEEe--eCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccC
Confidence 45678899888654 4444555655432 11111 122221 112346788999999876 4434 45676653233
Q ss_pred CCCCCCCCeeEe-cccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeec---CCCCCEEEEEEcCCCCcEE
Q 014472 258 RTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFD---SHKEEVFQVGWNPKNETIL 333 (424)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l 333 (424)
..+.....+... ......+..+.+.+.+. +++ ++.+|.+.. .... ++...... .-......+.|..++. .+
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEK-GF 317 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCc-eE
Confidence 443332222111 01124578899998775 454 445675543 2222 33322222 1123577788876664 44
Q ss_pred EEEeCCCeEEEeeC
Q 014472 334 ASCCLGRRLMVWDL 347 (424)
Q Consensus 334 ~s~~~dg~i~iwd~ 347 (424)
..+..|.|.-|+-
T Consensus 318 -~~G~~G~il~~~~ 330 (334)
T PRK13684 318 -VLGQRGVLLRYVG 330 (334)
T ss_pred -EECCCceEEEecC
Confidence 4566777777654
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.35 E-value=18 Score=30.26 Aligned_cols=105 Identities=17% Similarity=0.355 Sum_probs=60.8
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe-C--CC---eEEEE-ECCCCC-CCC
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG-D--DQ---YLLIW-DLRTPS-VSK 264 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~-~--dg---~i~i~-d~~~~~-~~~ 264 (424)
.|+.+.....|.+|++..... +.+..+.. -+.|..+.++..|++++ +-- . .. .+|+| +-+... ...
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~----~~~~~F~T-v~~V~~l~y~~~GDYlv-TlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC----PLLCTFST-VGRVLQLVYSEAGDYLV-TLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC----ceeEEEcc-hhheeEEEeccccceEE-EEEeecCCccceEEEEEEEhhhhcccCC
Confidence 455556667899999984322 33444443 37899999999998765 432 1 12 55665 222110 000
Q ss_pred Cee---------------------Eec-ccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 265 PVQ---------------------SVV-AHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 265 ~~~---------------------~~~-~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
++. ... .-..++.+++..|...+ |+.|+ ++.+.+|.+..
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEE
Confidence 111 110 12456788888887766 55555 56788988764
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.31 E-value=3 Score=35.42 Aligned_cols=67 Identities=4% Similarity=0.051 Sum_probs=42.4
Q ss_pred CCceEEEEeCCCcEEEEeCCCCCCCCcccceee-ee-------cCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 190 KEGHLLSGSDDAQICLWDINAAPKNKSLEAMQI-FK-------VHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 190 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~-------~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
+. +|++-..+|.+++||+.+.+..-....+.. +. .....|..+.++.+|. .+++- .+|..+.|+..-
T Consensus 22 ~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 22 GS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred CC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEE-eCCCEEEecccc
Confidence 44 788889999999999988754322111111 11 3456777888887765 34343 457778887654
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.90 E-value=33 Score=32.77 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=36.5
Q ss_pred CcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEe----c-ccCCCeeEEEecCCC
Q 014472 227 EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSV----V-AHQSEVNCLAFNPFN 285 (424)
Q Consensus 227 ~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~----~-~~~~~v~~i~~~~~~ 285 (424)
-...+.|+|.|++. +|++--..|.|++++...... ..+..+ . ........|+++|+-
T Consensus 29 L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCc
Confidence 34678999999985 664544469999998654331 111111 1 135678999999874
No 458
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.55 E-value=24 Score=30.79 Aligned_cols=137 Identities=13% Similarity=0.194 Sum_probs=72.2
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
+...-=.++...+||..+ .+...++. ..++.++|+. ++. .|+.+.....+..+|..+-.....+..
T Consensus 102 l~qLTWk~~~~f~yd~~t----------l~~~~~~~-y~~EGWGLt~--dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNT----------LKKIGTFP-YPGEGWGLTS--DGK-RLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEEESSSSEEEEEETTT----------TEEEEEEE--SSS--EEEE--CSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEEEEecCCeEEEEcccc----------ceEEEEEe-cCCcceEEEc--CCC-EEEEECCccceEEECCcccceEEEEEE
Confidence 444445678999999887 44455554 4567888883 455 466666677899999876533222211
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCee--Ee----------cccCCCeeEEEecCCCCe
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQ--SV----------VAHQSEVNCLAFNPFNEW 287 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~--~~----------~~~~~~v~~i~~~~~~~~ 287 (424)
. .-...-..++.+.|- +| .++|=.=....|...|..++.....+. .+ .....-.+.||++|..+.
T Consensus 168 ~-~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 168 T-DNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp E-ETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred E-ECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 0 000011245566665 22 455544455566666776665311000 00 001345789999999998
Q ss_pred EEEEEe
Q 014472 288 ILATGS 293 (424)
Q Consensus 288 ~l~~g~ 293 (424)
+++||=
T Consensus 245 l~vTGK 250 (264)
T PF05096_consen 245 LFVTGK 250 (264)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 888873
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.39 E-value=6 Score=33.65 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCccee------ec-------CCCCCEEEEEEcCCCCcEEEEEeCCC
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHT------FD-------SHKEEVFQVGWNPKNETILASCCLGR 340 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~sp~~~~~l~s~~~dg 340 (424)
.++..+.. .+.+ |++-+.+|.+++||+.+....+.. +. .....|..+..+.+|- -+++-+ +|
T Consensus 13 s~~~~l~~--~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFLEC--NGSY-LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NG 87 (219)
T ss_pred CceEEEEe--CCCE-EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CC
Confidence 34444443 4665 667778999999999984322111 11 3456789999998885 344444 56
Q ss_pred eEEEeeCCCC
Q 014472 341 RLMVWDLSRI 350 (424)
Q Consensus 341 ~i~iwd~~~~ 350 (424)
....|+..-.
T Consensus 88 ~~y~y~~~L~ 97 (219)
T PF07569_consen 88 DSYSYSPDLG 97 (219)
T ss_pred CEEEeccccc
Confidence 7888887653
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.22 E-value=15 Score=28.19 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=66.9
Q ss_pred eEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCC----CCceEEEEeCCCcEE
Q 014472 129 NRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKF----KEGHLLSGSDDAQIC 204 (424)
Q Consensus 129 ~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~ 204 (424)
..-+|....+ .|++++..|+|.|++.......... ....+ .+-.-...|++|+--+- +...|+.|+. ..+.
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt~-t~ll 76 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR--QDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLL 76 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc--ccCce-eEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEE
Confidence 3456766677 6777888999999997763222210 11222 33346667888864432 3345666654 6899
Q ss_pred EEeCCCCCCCCcccceeeeecCCcceeeEEeeCC---CCcEEEEEeCCCeEEEEECCC
Q 014472 205 LWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLR---HEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 205 vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.||+...... .++.-.+.|+++.+-.- ...++ ..+.+-.|.-||...
T Consensus 77 aYDV~~N~d~-------Fyke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 77 AYDVENNSDL-------FYKEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDYEG 126 (136)
T ss_pred EEEcccCchh-------hhhhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCCCC
Confidence 9999876321 12234566777766321 12233 334455666666544
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.39 E-value=4.8 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=20.2
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCC
Q 014472 237 LRHEYLFGSVGDDQYLLIWDLRTPS 261 (424)
Q Consensus 237 ~~~~~~~~s~~~dg~i~i~d~~~~~ 261 (424)
|+++.++++...+++|.++|..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 5677788888789999999997654
No 462
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.18 E-value=56 Score=33.92 Aligned_cols=177 Identities=11% Similarity=0.191 Sum_probs=101.5
Q ss_pred ccCCceeEEEec---C--C-CCcEEEEEecCCeEEEEeCCCCCC-----CCCCCCCCCCcEEEecC---CCCeeeEEecC
Q 014472 123 NHDGEVNRARYM---P--Q-NPFLIATKTVSAEVYVFDYSKHPS-----KPPLDGACSPDLRLRGH---STEGYGLSWSK 188 (424)
Q Consensus 123 ~h~~~v~~i~~~---p--~-~~~~latg~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~h---~~~v~~l~~~~ 188 (424)
.-..+|..|+|. . + ...+|++= ....+.|+...-+.. .....-...++..+..+ ..+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 566788888888 2 1 22366654 355778887322111 00001122334444422 23567899999
Q ss_pred CCCceEEEEeCCCcEEEEeCCCCCCC--CcccceeeeecC-------CcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC
Q 014472 189 FKEGHLLSGSDDAQICLWDINAAPKN--KSLEAMQIFKVH-------EGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT 259 (424)
Q Consensus 189 ~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~ 259 (424)
.....||.....|...||++...... ..+.......++ .+....|.|.++...+|+ + ....+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~-~r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-C-NRSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-E-cCCceEEEECCC
Confidence 88778999999999999999322211 111111111111 123346788877766653 3 456799999998
Q ss_pred CCCCCCeeEecccCCCeeEEEecCCCCe-EEEEEeCCCcEEEEECCC
Q 014472 260 PSVSKPVQSVVAHQSEVNCLAFNPFNEW-ILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 260 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~~g~~dg~i~iwd~~~ 305 (424)
......+. .......|..+.-+|.+.. +|+.. ...|...|++.
T Consensus 234 ~~~~~~l~-~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLV-TAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCccchhc-cCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 76422121 1234567888888887332 23332 36788888876
No 463
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.01 E-value=31 Score=30.75 Aligned_cols=212 Identities=15% Similarity=0.149 Sum_probs=112.7
Q ss_pred CeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccce-eeeec-----CCcceeeEEeeCCCC-----------cE
Q 014472 180 EGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAM-QIFKV-----HEGVVEDVAWHLRHE-----------YL 242 (424)
Q Consensus 180 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~-----~~~~v~~i~~~~~~~-----------~~ 242 (424)
..+.|+++|.+. +-++....+...+||.........-.++ ..+.. .....+.+.|+.... ..
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 458999999776 6777777889999998722111000111 11110 234567777764332 23
Q ss_pred EEEEeCCCeEEEEECCCCCCC--CCeeEecc-cCCCee-EEEe--cCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCC
Q 014472 243 FGSVGDDQYLLIWDLRTPSVS--KPVQSVVA-HQSEVN-CLAF--NPFNEWILATGSTDKTVKLFDLRKISTALHTFDSH 316 (424)
Q Consensus 243 ~~s~~~dg~i~i~d~~~~~~~--~~~~~~~~-~~~~v~-~i~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 316 (424)
|+.+++||+|.-|...-.... .....+.. ....|+ -+++ ...+.+|.++--..++|.+||-.- .++..-..-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f--~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF--RPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc--ccccCCCCc
Confidence 457789999999985433210 11222221 123332 2333 344566666666789999998653 211110000
Q ss_pred CCCEEEEEEcCC-----CCcEEE-------------EEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEE--cCCCCC
Q 014472 317 KEEVFQVGWNPK-----NETILA-------------SCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIH--GGHTSK 376 (424)
Q Consensus 317 ~~~v~~~~~sp~-----~~~~l~-------------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~ 376 (424)
..+-.-.-|.|. +..+++ .+..-|.|-+||+.- .+++.+ .+.-..
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---------------~l~~r~as~g~LNa 245 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---------------QLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---------------cEEEEeccCCcccC
Confidence 011001111121 111222 223345777887764 444433 344445
Q ss_pred cceEEeCC------CCCcEEEEEeCCCcEEEEecCCCCCC
Q 014472 377 ISDFSWNP------CEDWVISSVAEDNILQIWQMAENIYH 410 (424)
Q Consensus 377 v~~~~~~~------~~~~~l~s~~~d~~i~iw~~~~~~~~ 410 (424)
.+.++..| .+. +|+.-=-||+|..+|..++.+.
T Consensus 246 PWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCcee
Confidence 67777755 355 6666557999999999887653
No 464
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=83.39 E-value=61 Score=33.75 Aligned_cols=103 Identities=9% Similarity=0.063 Sum_probs=67.9
Q ss_pred eCCCcEEEEECCCCCCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeE-EEc
Q 014472 293 STDKTVKLFDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLF-IHG 371 (424)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~ 371 (424)
+-...|++|++.. ++.++.-..+..++..+...-.+. .++.|..-+.+.+-..+.... .... .-.
T Consensus 845 ~In~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg------------~f~evArD 910 (1096)
T KOG1897|consen 845 GINQSVRLYEWTT-ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEG------------NFEEVARD 910 (1096)
T ss_pred ecCcEEEEEEccc-cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCC------------ceEEeehh
Confidence 3467899999987 556666677888999999988886 578888777777766554321 1111 112
Q ss_pred CCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q 014472 372 GHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHD 411 (424)
Q Consensus 372 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 411 (424)
-+..+++++.+-.+.. ++.+-.+|.+.+-...+..-.+
T Consensus 911 ~~p~Wmtaveil~~d~--ylgae~~gNlf~v~~d~~~~td 948 (1096)
T KOG1897|consen 911 YNPNWMTAVEILDDDT--YLGAENSGNLFTVRKDSDATTD 948 (1096)
T ss_pred hCccceeeEEEecCce--EEeecccccEEEEEecCCCCch
Confidence 3456677777766665 3344567778877776544433
No 465
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.35 E-value=34 Score=30.75 Aligned_cols=238 Identities=12% Similarity=0.127 Sum_probs=99.3
Q ss_pred eccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecC---CCCeeeEEecCCCCceEEEEe
Q 014472 122 INHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGH---STEGYGLSWSKFKEGHLLSGS 198 (424)
Q Consensus 122 ~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~~~~~~~~l~s~~ 198 (424)
++-...+..|.|.... +-+|+|. .+.| +..... ...+.+.. .... .-...+|.|.. ...+++|
T Consensus 13 l~t~~~l~dV~F~d~~-~G~~VG~-~g~i--l~T~DG------G~tW~~~~-~~~~~~~~~~l~~I~f~~--~~g~ivG- 78 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPN-HGWAVGA-YGTI--LKTTDG------GKTWQPVS-LDLDNPFDYHLNSISFDG--NEGWIVG- 78 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEET-TTEE--EEESST------TSS-EE------S-----EEEEEEEET--TEEEEEE-
T ss_pred cCCCCceEEEEEecCC-EEEEEec-CCEE--EEECCC------Cccccccc-cCCCccceeeEEEEEecC--CceEEEc-
Confidence 4556688999998544 4566665 4544 333220 01122111 1111 12356777754 2245554
Q ss_pred CCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCC-CCCCCCeeEecccCCCee
Q 014472 199 DDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRT-PSVSKPVQSVVAHQSEVN 277 (424)
Q Consensus 199 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~v~ 277 (424)
..| +.+...+.+ .....+..-..-.+....+.....+ ..+ .++..|.| |-... +...+. ........+.
T Consensus 79 ~~g-~ll~T~DgG---~tW~~v~l~~~lpgs~~~i~~l~~~-~~~-l~~~~G~i--y~T~DgG~tW~~--~~~~~~gs~~ 148 (302)
T PF14870_consen 79 EPG-LLLHTTDGG---KTWERVPLSSKLPGSPFGITALGDG-SAE-LAGDRGAI--YRTTDGGKTWQA--VVSETSGSIN 148 (302)
T ss_dssp ETT-EEEEESSTT---SS-EE----TT-SS-EEEEEEEETT-EEE-EEETT--E--EEESSTTSSEEE--EE-S----EE
T ss_pred CCc-eEEEecCCC---CCcEEeecCCCCCCCeeEEEEcCCC-cEE-EEcCCCcE--EEeCCCCCCeeE--cccCCcceeE
Confidence 344 333333333 2222221111112233334433333 233 33445544 33333 332211 1233456788
Q ss_pred EEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceee-cCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC
Q 014472 278 CLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTF-DSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP 356 (424)
Q Consensus 278 ~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 356 (424)
.+.-.++|. +++++..-....-||--. ..-... ......|..+.|.|++. +.+ ....|.|++=+.......-.
T Consensus 149 ~~~r~~dG~-~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~- 222 (302)
T PF14870_consen 149 DITRSSDGR-YVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWS- 222 (302)
T ss_dssp EEEE-TTS--EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE--
T ss_pred eEEECCCCc-EEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccc-
Confidence 888999998 576765555556777543 111111 22367899999999985 433 44888888877222111000
Q ss_pred CccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcE
Q 014472 357 EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 399 (424)
+.+.......-.+.+++|.+++. +.++|+ .|.+
T Consensus 223 --------~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l 255 (302)
T PF14870_consen 223 --------EPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL 255 (302)
T ss_dssp ----------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred --------cccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence 00000011122478999999887 677665 4444
No 466
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.98 E-value=33 Score=30.41 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=64.5
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEe------CCCeEEEEECCCCCCCCCeeEecc---
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVG------DDQYLLIWDLRTPSVSKPVQSVVA--- 271 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~------~dg~i~i~d~~~~~~~~~~~~~~~--- 271 (424)
..|++||....+-.. .-.+-.+.|+++.|..+ ..++++|. ....+..||..+.. ...+..
T Consensus 16 ~~lC~yd~~~~qW~~------~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS------PGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGSS 84 (281)
T ss_pred CEEEEEECCCCEeec------CCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCe----eeecCCccc
Confidence 469999987653211 11224678999999854 45776664 45678899998754 222222
Q ss_pred --cCCCeeEEEecC-CCCeEEEEEe-CCC--cEEEEECCCCCCccee-ecCCCCCEEEEEEcC
Q 014472 272 --HQSEVNCLAFNP-FNEWILATGS-TDK--TVKLFDLRKISTALHT-FDSHKEEVFQVGWNP 327 (424)
Q Consensus 272 --~~~~v~~i~~~~-~~~~~l~~g~-~dg--~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~sp 327 (424)
-.++|+.+.+.. +...+.+.|. .+| .|..||=.+. ..+.. .......|..+.+-|
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W-~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW-SSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce-EeccccccCCCCEEEEEEEEe
Confidence 247888887743 3333555554 333 4666765442 22222 222234555555443
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.97 E-value=45 Score=31.91 Aligned_cols=115 Identities=13% Similarity=0.204 Sum_probs=59.4
Q ss_pred CCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCccccee-eee-cCCcceeeEEeeCCC------CcEEEEEeC
Q 014472 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQ-IFK-VHEGVVEDVAWHLRH------EYLFGSVGD 248 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~-~~~~~v~~i~~~~~~------~~~~~s~~~ 248 (424)
.-...+.|+|.|++. +|++--..|.|++++....... ....+. ... ...+....|+++|+- .+++++-+.
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 345578999999885 4554433699999986543221 111111 111 135678999999874 245544321
Q ss_pred ---------CCeEEEEECCCC--CCCCCeeEeccc----CCCeeEEEecCCCCeEEEEEe
Q 014472 249 ---------DQYLLIWDLRTP--SVSKPVQSVVAH----QSEVNCLAFNPFNEWILATGS 293 (424)
Q Consensus 249 ---------dg~i~i~d~~~~--~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~~g~ 293 (424)
...|.-|.+... ........+... ...-..|+|.|+|..++.+|.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 234544554321 111111111111 123457889999974444444
No 468
>PLN02193 nitrile-specifier protein
Probab=82.40 E-value=49 Score=31.98 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=31.4
Q ss_pred CcEEEEEeCCC-----eEEEEECCCCCCCCCeeE---ecccCCCeeEEEecCCCCeEEEEEeCC----CcEEEEECCC
Q 014472 240 EYLFGSVGDDQ-----YLLIWDLRTPSVSKPVQS---VVAHQSEVNCLAFNPFNEWILATGSTD----KTVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~dg-----~i~i~d~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~~l~~g~~d----g~i~iwd~~~ 305 (424)
..+++.|+.++ .+..||+.+..- ..+.. ..........+.+ ++. +++.|+.+ ..+.+||+.+
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCC
Confidence 45777777543 467788876441 11110 0011111122222 344 66677655 4588999876
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=38 Score=29.99 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=96.5
Q ss_pred EEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEE
Q 014472 117 QIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLS 196 (424)
Q Consensus 117 ~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 196 (424)
.++..+.-++-+..++++.+ ++..+..+.-++|.|+....+.. ....+. ..+--+++.. .|+ +..+
T Consensus 78 ~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~-------~~~~ln-t~gyaygv~v--sGn-~aYV 143 (370)
T COG5276 78 VLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPT-------LIGFLN-TDGYAYGVYV--SGN-YAYV 143 (370)
T ss_pred ceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcc-------eecccc-CCceEEEEEe--cCC-EEEE
Confidence 44556677788888999863 44445666779999998732221 111111 1122344444 365 6777
Q ss_pred EeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCe
Q 014472 197 GSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEV 276 (424)
Q Consensus 197 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 276 (424)
+..|.-+.+.|+.+.+.. .....+......-+.++.+ |++-+ .+..|+-+.+.|+..+.....+.... ....+
T Consensus 144 adlddgfLivdvsdpssP---~lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~ 216 (370)
T COG5276 144 ADLDDGFLIVDVSDPSSP---QLAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGT 216 (370)
T ss_pred eeccCcEEEEECCCCCCc---eeeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEe-cCCce
Confidence 776777788999876542 1122233334444677776 44444 45578889999999877533332221 23378
Q ss_pred eEEEecCCCCeEEEEEeCCCcEEEEECCCCC
Q 014472 277 NCLAFNPFNEWILATGSTDKTVKLFDLRKIS 307 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 307 (424)
.++..+++.. +++.. +--+.+-|...+.
T Consensus 217 ~sv~vsdnr~-y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 217 YSVSVSDNRA-YLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEEEecCCee-EEEEc--ccceEEEecCCCC
Confidence 8888887544 23332 3345566665533
No 470
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.21 E-value=58 Score=34.72 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=72.1
Q ss_pred CCcEEEEEEeccCCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCc
Q 014472 113 NGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEG 192 (424)
Q Consensus 113 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 192 (424)
..+++.+-.....++|.+++=.. | .|++|. ..+|.||+++.. ....++. +. .-+++-....--++
T Consensus 1085 ~~KlKel~~eE~KGtVsavceV~-G--~l~~~~-GqKI~v~~l~r~-------~~ligVa-Fi--D~~~yv~s~~~vkn- 1149 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEVR-G--HLLSSQ-GQKIIVRKLDRD-------SELIGVA-FI--DLPLYVHSMKVVKN- 1149 (1366)
T ss_pred cceeeeeehhhcccceEEEEEec-c--EEEEcc-CcEEEEEEeccC-------CcceeeE-Ee--ccceeEEehhhhhh-
Confidence 45677777777889998887553 4 466644 458999999651 1112221 11 11222222222233
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeee--cCCcceeeEEeeCCCCcE-EEEEeCCCeEEEEECC
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFK--VHEGVVEDVAWHLRHEYL-FGSVGDDQYLLIWDLR 258 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~-~~s~~~dg~i~i~d~~ 258 (424)
+|+.|.--..|.+.-...... . +..+. ...-.+.++.|.-+|..+ |+++..++.|++|-..
T Consensus 1150 lIl~gDV~ksisfl~fqeep~--r---lsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1150 LILAGDVMKSISFLGFQEEPY--R---LSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred heehhhhhhceEEEEEccCce--E---EEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 677777777777766654321 1 11111 123357778887777655 6677789998887543
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.92 E-value=43 Score=29.66 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred CCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEE
Q 014472 177 HSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWD 256 (424)
Q Consensus 177 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d 256 (424)
-.+.+..+.++. + +...+..+.-++|.|+.+......+. .+. ..+--.++..+ |++..++.-.|| +.+.|
T Consensus 85 ~~~l~~Dv~vse--~-yvyvad~ssGL~IvDIS~P~sP~~~~---~ln-t~gyaygv~vs--Gn~aYVadlddg-fLivd 154 (370)
T COG5276 85 ARDLFADVRVSE--E-YVYVADWSSGLRIVDISTPDSPTLIG---FLN-TDGYAYGVYVS--GNYAYVADLDDG-FLIVD 154 (370)
T ss_pred hhhhhheeEecc--c-EEEEEcCCCceEEEeccCCCCcceec---ccc-CCceEEEEEec--CCEEEEeeccCc-EEEEE
Confidence 344566777764 3 67777888889999998875532221 111 12334444444 666654443444 67889
Q ss_pred CCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCCcceeecCCCC-CEEEEEEcCCCCcEEEE
Q 014472 257 LRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKISTALHTFDSHKE-EVFQVGWNPKNETILAS 335 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~s 335 (424)
+..++.................++.+ |++ ...+..|+-+.+.|+.++..|+..-....+ .+.++..+++.. +++.
T Consensus 155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~-AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vv 230 (370)
T COG5276 155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNY-AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVV 230 (370)
T ss_pred CCCCCCceeeeeeccCCCCceeEEEe--cCe-EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEE
Confidence 98876533333333344445667776 553 556678899999999987777655443334 788888888763 3433
Q ss_pred EeCCCeEEEeeCCCCC
Q 014472 336 CCLGRRLMVWDLSRID 351 (424)
Q Consensus 336 ~~~dg~i~iwd~~~~~ 351 (424)
...| +.+-|.....
T Consensus 231 -y~eg-vlivd~s~~s 244 (370)
T COG5276 231 -YDEG-VLIVDVSGPS 244 (370)
T ss_pred -cccc-eEEEecCCCC
Confidence 3333 6666766544
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.89 E-value=80 Score=32.80 Aligned_cols=172 Identities=10% Similarity=0.097 Sum_probs=98.3
Q ss_pred cCCCCeeeEEec---CC--CCceEEEEeCCCcEEEEeCCCCCC-------CC--cccceeeee---cCCcceeeEEeeCC
Q 014472 176 GHSTEGYGLSWS---KF--KEGHLLSGSDDAQICLWDINAAPK-------NK--SLEAMQIFK---VHEGVVEDVAWHLR 238 (424)
Q Consensus 176 ~h~~~v~~l~~~---~~--~~~~l~s~~~dg~i~vwd~~~~~~-------~~--~~~~~~~~~---~~~~~v~~i~~~~~ 238 (424)
....+|..|+|. .. ....++..-....+.|+...-... .. ...++..+. ....+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 466788899987 21 121244445556777877322111 01 112222222 23457789999998
Q ss_pred CCcEEEEEeCCCeEEEEECCCC--CCCCCeeEecccC----------CCeeEEEecCCCCeEEEEEeCCCcEEEEECCCC
Q 014472 239 HEYLFGSVGDDQYLLIWDLRTP--SVSKPVQSVVAHQ----------SEVNCLAFNPFNEWILATGSTDKTVKLFDLRKI 306 (424)
Q Consensus 239 ~~~~~~s~~~dg~i~i~d~~~~--~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~ 306 (424)
...-||.....|...||++... .....+.....+. +.-..|.|.++...+| ..+ ...+.++|+...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 8888999999999999999211 1111111111111 2234788987766544 443 467999999874
Q ss_pred CCcc-eeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCC
Q 014472 307 STAL-HTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRI 350 (424)
Q Consensus 307 ~~~~-~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~ 350 (424)
.... .........|..+.-+|.....++.-. ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 3211 122234568889998887433333322 245777787763
No 473
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=79.67 E-value=81 Score=32.69 Aligned_cols=205 Identities=10% Similarity=0.088 Sum_probs=108.0
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCccc--ceeeeecCCcceeeEEee--CCCCcEEEEEeC--CCeEEEEECCCCCC----
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLE--AMQIFKVHEGVVEDVAWH--LRHEYLFGSVGD--DQYLLIWDLRTPSV---- 262 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~--~~~~~~~~s~~~--dg~i~i~d~~~~~~---- 262 (424)
-+++....|.+++|=.+......... .+..+..-...|+..++. ..|..+++++.. .+.|++|.+.-.-.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 36666778999999773322211111 011112233455555544 555556555443 57888876431100
Q ss_pred -CC----CeeEe-cc--------------------cCCCeeEEEecC------CCCeEEEEEeC----CCcEEEEECCCC
Q 014472 263 -SK----PVQSV-VA--------------------HQSEVNCLAFNP------FNEWILATGST----DKTVKLFDLRKI 306 (424)
Q Consensus 263 -~~----~~~~~-~~--------------------~~~~v~~i~~~~------~~~~~l~~g~~----dg~i~iwd~~~~ 306 (424)
.. |...+ .. .-..++.+.|-+ ..+.++++.+. ...|.-|.++..
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 00 11111 00 112455666654 23345555443 347999998864
Q ss_pred CCcceeec-------------------------CCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCCCCcccCC----C
Q 014472 307 STALHTFD-------------------------SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTP----E 357 (424)
Q Consensus 307 ~~~~~~~~-------------------------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~ 357 (424)
...++... .....|.++.-...+. +++..-.||+|.++|-.+.+..... .
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 33322210 1124566777666664 7888999999999999887654333 1
Q ss_pred ccC--CCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEE
Q 014472 358 DAE--DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 (424)
Q Consensus 358 ~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 400 (424)
... ....+.-+.+. +...+..++|||.+. .++.-..+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c-~~v~~~~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFP-CIQPPLHVAFSPTMC-SLVQIDEDGKTK 345 (753)
T ss_pred Cccccccccccccccc-cCCCCceEEECcccc-eEEEEecCCCce
Confidence 000 00111112221 122556799999999 677778888866
No 474
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=80 Score=31.90 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=33.6
Q ss_pred CcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCC
Q 014472 201 AQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTP 260 (424)
Q Consensus 201 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~ 260 (424)
-.|+|++..... +....-..+.+-.+.|+.+.. ++ +...+|++++|++-..
T Consensus 64 ~~I~If~~sG~l-------L~~~~w~~~~lI~mgWs~~ee-LI-~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 64 PYIRIFNISGQL-------LGRILWKHGELIGMGWSDDEE-LI-CVQKDGTVHVYGLLGE 114 (829)
T ss_pred eeEEEEeccccc-------hHHHHhcCCCeeeecccCCce-EE-EEeccceEEEeecchh
Confidence 457777775321 121111233788999998765 44 6789999999998653
No 475
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.28 E-value=53 Score=29.80 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=47.8
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCCCCCCeeEecccCCCe--eEEEecCCCCeEEEEEeCC-----CcEEEEECCCCC
Q 014472 240 EYLFGSVGDD-----QYLLIWDLRTPSVSKPVQSVVAHQSEV--NCLAFNPFNEWILATGSTD-----KTVKLFDLRKIS 307 (424)
Q Consensus 240 ~~~~~s~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~ 307 (424)
..+++.|+.+ ..+..||+.+.........+..-..+. .+++.. +..+.+.|+.. ..+..||+.+..
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 4577777754 356677876644200011111111111 122222 33467777742 358888887521
Q ss_pred -CcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCe----EEEeeCCCC
Q 014472 308 -TALHTFDSHKEEVFQVGWNPKNETILASCCLGRR----LMVWDLSRI 350 (424)
Q Consensus 308 -~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~----i~iwd~~~~ 350 (424)
..+..+.. .......+...++ .+++.|+.++. +.+||+.+.
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence 11111111 1111112222234 46777776542 456777654
No 476
>PLN02193 nitrile-specifier protein
Probab=77.42 E-value=32 Score=33.26 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=14.3
Q ss_pred cEEEEEeCC----CeEEEEECCCCC
Q 014472 241 YLFGSVGDD----QYLLIWDLRTPS 261 (424)
Q Consensus 241 ~~~~s~~~d----g~i~i~d~~~~~ 261 (424)
.+++.++.+ ..+.+||+.+..
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE
Confidence 366666655 458899998755
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.21 E-value=38 Score=31.82 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=92.3
Q ss_pred CCceeEEEecCCCCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCC----Cee-eEEecCCCCceEEEEeC
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHST----EGY-GLSWSKFKEGHLLSGSD 199 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~~l~s~~~ 199 (424)
..+|..+-..|+++. +..-+. ..+.|+++.+..... ..-.....+ .|+ .+.....+. -|++++.
T Consensus 220 ~~~v~qllL~Pdg~~-LYv~~g-~~~~v~~L~~r~l~~--------rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~ 288 (733)
T COG4590 220 FSDVSQLLLTPDGKT-LYVRTG-SELVVALLDKRSLQI--------RKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHE 288 (733)
T ss_pred ccchHhhEECCCCCE-EEEecC-CeEEEEeecccccch--------hhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcC
Confidence 467788888999874 333332 678889887632211 111111111 122 222222233 4888899
Q ss_pred CCcEEEE-eCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeE
Q 014472 200 DAQICLW-DINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNC 278 (424)
Q Consensus 200 dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 278 (424)
||.|.-| |++.+.. ..+..++.++-...++..+.-. +.+..|++-+..|++.++.....+. +- +...-..+.-
T Consensus 289 dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~---lL-~~~~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKL---LL-FERAYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcc---ee-hhhhhcCcce
Confidence 9998777 6655433 3444444444333444444322 3345677888899998887655332 21 1222336677
Q ss_pred EEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 279 LAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 279 i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
++++|.+.+ +++- ..|.|+++.+.+
T Consensus 363 ~~~Sp~~~~-Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 363 VAMSPNQAY-LLSE-DQGKIRLAQLEN 387 (733)
T ss_pred eeeCcccch-heee-cCCceEEEEecC
Confidence 899999886 4443 457899999887
No 478
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.90 E-value=67 Score=30.24 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=61.2
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCC--cccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEE
Q 014472 178 STEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNK--SLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIW 255 (424)
Q Consensus 178 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~ 255 (424)
...++++.|.+++. ++.++..|.+.. ....+..-. .+.... .......+.++.|.+++. ++ .++..|.+..-
T Consensus 280 ~~~l~~v~~~~dg~--l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~-~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s 353 (398)
T PLN00033 280 ARRIQNMGWRADGG--LWLLTRGGGLYV-SKGTGLTEEDFDFEEAD-IKSRGFGILDVGYRSKKE-AW-AAGGSGILLRS 353 (398)
T ss_pred ccceeeeeEcCCCC--EEEEeCCceEEE-ecCCCCcccccceeecc-cCCCCcceEEEEEcCCCc-EE-EEECCCcEEEe
Confidence 44678999988776 444456676543 333332100 111100 011223588899987764 55 55677866555
Q ss_pred ECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEE
Q 014472 256 DLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLF 301 (424)
Q Consensus 256 d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iw 301 (424)
. ..++..........-...++.+.|.+.++ .+++ +.+|.|.-|
T Consensus 354 ~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 354 T-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred C-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 3 33332222211122345688999987665 3544 567776544
No 479
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.66 E-value=64 Score=29.41 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCceeEEEecCCCCcEEEEEecCCe------EEEEeCCCCCCCCCCCCCCCCcEEEecCCC--------CeeeEEecCCC
Q 014472 125 DGEVNRARYMPQNPFLIATKTVSAE------VYVFDYSKHPSKPPLDGACSPDLRLRGHST--------EGYGLSWSKFK 190 (424)
Q Consensus 125 ~~~v~~i~~~p~~~~~latg~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--------~v~~l~~~~~~ 190 (424)
-+.+..|.+.|++..++|. +.+|. +..+++......... ........+..-.+ ..-+|++.+++
T Consensus 19 ~GGlSgl~~~~~~~~~~av-SD~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAV-SDRGPNKGPPRFYTFRIDYDQGGIGG-VTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEE-ECCCCCCCCCcEEEEEeeccCCCccc-eEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 3567788998755544444 66777 666665541111100 00011111221111 33478885555
Q ss_pred CceEEEEeCC------CcEEEEeCCCCCCCCcccceeee---------ecCCcceeeEEeeCCCCcEEEEEe----CCC-
Q 014472 191 EGHLLSGSDD------AQICLWDINAAPKNKSLEAMQIF---------KVHEGVVEDVAWHLRHEYLFGSVG----DDQ- 250 (424)
Q Consensus 191 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~~~~s~~----~dg- 250 (424)
. ++++.-.+ ..|..++.. +.....+.....+ .........++++|++..++++.- .|+
T Consensus 97 ~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 97 S-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred C-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 4 55555555 678888866 3332222111111 224567899999999986664321 122
Q ss_pred --------eEEE--EECCCCC-CCCC-eeEecc-----cCCCeeEEEecCCCCe
Q 014472 251 --------YLLI--WDLRTPS-VSKP-VQSVVA-----HQSEVNCLAFNPFNEW 287 (424)
Q Consensus 251 --------~i~i--~d~~~~~-~~~~-~~~~~~-----~~~~v~~i~~~~~~~~ 287 (424)
.+++ ||..+.. .... ...+.. ....|..+.+-++++.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 1444 4544422 1111 111111 3467888999998874
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.10 E-value=72 Score=29.70 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCeeeEEec--C-CCCceEEEEeCCCcEEEEeCCCCCCC-CcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEE
Q 014472 179 TEGYGLSWS--K-FKEGHLLSGSDDAQICLWDINAAPKN-KSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLI 254 (424)
Q Consensus 179 ~~v~~l~~~--~-~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i 254 (424)
..++.+|.- + ++.-+++....+|.+..|.+...... -..+.++.+.. .+.+..|........++ .+-++.-|.-
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY-vgEE~~GIW~ 233 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY-VGEEDVGIWR 233 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE-EEETTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE-EecCccEEEE
Confidence 357777763 3 34446777889999999988643221 22234555553 45788888888776665 7788877877
Q ss_pred EECCCCCCCCC--eeEec--ccCCCeeEEEec--CCC-CeEEEEEeCCCcEEEEECCCCCCcceee
Q 014472 255 WDLRTPSVSKP--VQSVV--AHQSEVNCLAFN--PFN-EWILATGSTDKTVKLFDLRKISTALHTF 313 (424)
Q Consensus 255 ~d~~~~~~~~~--~~~~~--~~~~~v~~i~~~--~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 313 (424)
|+.+....... +.... .....|..|+.- .++ .++|++.-.+++..|||.+.....+..|
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 87764332211 21111 234567777763 333 3677776678899999987644433333
No 481
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=74.86 E-value=20 Score=25.14 Aligned_cols=31 Identities=3% Similarity=0.188 Sum_probs=26.8
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
..+.+.++|+++++.++....+.|++++...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4688999999998888888899999998764
No 482
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.80 E-value=12 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=25.2
Q ss_pred CCEEEEEEcC---CCCcEEEEEeCCCeEEEeeCCCCCc
Q 014472 318 EEVFQVGWNP---KNETILASCCLGRRLMVWDLSRIDE 352 (424)
Q Consensus 318 ~~v~~~~~sp---~~~~~l~s~~~dg~i~iwd~~~~~~ 352 (424)
..+..++.++ ++..+|++.+.|+++|+||+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3456666666 2445899999999999999999876
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.21 E-value=63 Score=28.68 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred CeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEe------CCCcEEEEECCCCCCcceeecC-----CCC
Q 014472 250 QYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGS------TDKTVKLFDLRKISTALHTFDS-----HKE 318 (424)
Q Consensus 250 g~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~-----~~~ 318 (424)
..|++||..+.+-..+- ..-.+.|+.|.|..+.+ +++.|. ....+..||+.+ .....+.. -.+
T Consensus 16 ~~lC~yd~~~~qW~~~g---~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG---NGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEeecCC---CCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCCC
Confidence 45999998876532121 12456899999985444 777765 345788899886 23333333 236
Q ss_pred CEEEEEEcC-CCCcEEEEEe-CCC--eEEEeeCCCCC
Q 014472 319 EVFQVGWNP-KNETILASCC-LGR--RLMVWDLSRID 351 (424)
Q Consensus 319 ~v~~~~~sp-~~~~~l~s~~-~dg--~i~iwd~~~~~ 351 (424)
+|..+.+.. +...+.++|. .+| .|..||-....
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 788887743 3334555544 333 46677665543
No 484
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.20 E-value=12 Score=36.98 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=25.5
Q ss_pred CeeEEEecC---CCCeEEEEEeCCCcEEEEECCCCCCcceee
Q 014472 275 EVNCLAFNP---FNEWILATGSTDKTVKLFDLRKISTALHTF 313 (424)
Q Consensus 275 ~v~~i~~~~---~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 313 (424)
.+.+++.+. .+..++++-+.|+++|+||+.+ +.++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEe
Confidence 455566655 2334788999999999999998 5554443
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=74.16 E-value=1.1e+02 Score=31.32 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=40.7
Q ss_pred eEEEecCCCCeEEEEEeCCC-----cEEEEECCCC--CCcceeecCCCCCEEEEEEcCCCCcEEEEEeCCCeEEEeeCCC
Q 014472 277 NCLAFNPFNEWILATGSTDK-----TVKLFDLRKI--STALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349 (424)
Q Consensus 277 ~~i~~~~~~~~~l~~g~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~iwd~~~ 349 (424)
..++|-|+|. .+++-+.|| .|.++..+.. +..- .-.+....+..++|+-... +++. ...+.+++|-..+
T Consensus 250 ~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~-lr~~~dEk~~~~~wn~~s~-vlav-~~~n~~~lwttkN 325 (1243)
T COG5290 250 HQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFD-LRVGCDEKAFLENWNLLST-VLAV-AEGNLLKLWTTKN 325 (1243)
T ss_pred hccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCcc-ccCCchhhhhhhhhhHHHH-HHHH-hhcceEEEEEccc
Confidence 3478999998 688766554 3555543321 1110 1112244567788876653 3433 4456799998776
Q ss_pred C
Q 014472 350 I 350 (424)
Q Consensus 350 ~ 350 (424)
.
T Consensus 326 y 326 (1243)
T COG5290 326 Y 326 (1243)
T ss_pred e
Confidence 4
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.14 E-value=1e+02 Score=31.26 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred CCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECC
Q 014472 179 TEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLR 258 (424)
Q Consensus 179 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~ 258 (424)
.-++++.-+|.++ -++++..||+|++|+.......+.. ....+-..+.|...| ++++..|..+.-|.-.
T Consensus 15 e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~-------~~~~p~~nlv~tnhg---l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKIC-------EEAKPKENLVFTNHG---LVTATSDRRALAWKED 83 (1636)
T ss_pred ceeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhh-------hhcCCccceeeeccc---eEEEeccchhheeecc
Confidence 3466777788777 5999999999999998644221111 112233445555444 3466667777777543
Q ss_pred CCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEEEEE
Q 014472 259 TPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKLFD 302 (424)
Q Consensus 259 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd 302 (424)
. ...+....-........++...|..+++ +|..-|-|.-+|
T Consensus 84 g-vvqqqfdyndqsekefss~~cdptaqnv--vgtlcggv~q~d 124 (1636)
T KOG3616|consen 84 G-VVQQQFDYNDQSEKEFSSILCDPTAQNV--VGTLCGGVEQFD 124 (1636)
T ss_pred C-cchhhccccchhhhhccceecCchhhhh--hhhhccceeeeh
Confidence 2 1100111001123345566666665542 333344444444
No 487
>PLN02153 epithiospecifier protein
Probab=73.82 E-value=73 Score=29.19 Aligned_cols=22 Identities=5% Similarity=0.096 Sum_probs=14.2
Q ss_pred CcEEEEEeCC-----------CeEEEEECCCCC
Q 014472 240 EYLFGSVGDD-----------QYLLIWDLRTPS 261 (424)
Q Consensus 240 ~~~~~s~~~d-----------g~i~i~d~~~~~ 261 (424)
..+++.|+.+ ..+.+||+.+..
T Consensus 138 ~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 138 NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 3566777753 247788987654
No 488
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.85 E-value=1e+02 Score=30.41 Aligned_cols=67 Identities=16% Similarity=0.049 Sum_probs=37.2
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCc----c-eeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCC
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEG----V-VEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSV 262 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~-v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~ 262 (424)
.++.++.++.|.-.|..+++................ . -..+++. +..++ .++.|+.|.-+|.++++.
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~-v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVF-FGTLDARLVALDAKTGKV 142 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEE-EEcCCCEEEEEECCCCCE
Confidence 577777778888888888765433321100000000 0 0112222 23344 677899999999998875
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=72.79 E-value=19 Score=36.45 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=79.7
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCCcEEEecCCCCeeeEEecCCCCceEEEEeCCCcEEEEeCCCCCCCCcccc
Q 014472 140 LIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEGYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEA 219 (424)
Q Consensus 140 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 219 (424)
-+..|+.+|.+.|+.-.....+. ........-...+.++.+++ + -+..|.-||++-.+--.-... ....+
T Consensus 549 Tic~gtq~ssisissss~~s~ke------~~~~~~spe~~~v~~l~~ss-~--Slgagl~dgt~a~y~rap~gS-wd~ep 618 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKE------VTSEPPSPEHESVKLLLFSS-G--SLGAGLIDGTLAVYGRAPSGS-WDGEP 618 (925)
T ss_pred cccccCccceeEEeeccCCcccc------eeccCCCCchhhhhhhhccc-c--ccccCccCCccccccCCCCCC-CCCCC
Confidence 36678889999998866211000 00001111223456666655 2 255666666665553221111 11111
Q ss_pred eeeeecCCcceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCCcEE
Q 014472 220 MQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVK 299 (424)
Q Consensus 220 ~~~~~~~~~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg~i~ 299 (424)
...+.....+|...++..+ . +.++.+|.|.++...+............|...|+++.....+= .++..+ ...++
T Consensus 619 ~~~~~~g~lPvrsla~~ed---~-~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gV-wvafas-G~~~r 692 (925)
T KOG3522|consen 619 NISIPTGSLPVRSLAFQED---F-VWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGV-WVAFAS-GDEER 692 (925)
T ss_pred ccccccCCccccchhhhhc---e-eeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCce-EEEEcC-CCEEE
Confidence 1222234567888887644 2 3677899999999877543333333345667899999886553 233332 23455
Q ss_pred EEECCC
Q 014472 300 LFDLRK 305 (424)
Q Consensus 300 iwd~~~ 305 (424)
+++..+
T Consensus 693 lfhtet 698 (925)
T KOG3522|consen 693 LFHTET 698 (925)
T ss_pred Eecccc
Confidence 555544
No 490
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=72.55 E-value=49 Score=34.32 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCeEEEEECCCCCCCCCeeEe-cccCCCeeEEEecCCCCeEEEEEeCCC-----cEEEEECCCCCCcceeecCCCCCEEE
Q 014472 249 DQYLLIWDLRTPSVSKPVQSV-VAHQSEVNCLAFNPFNEWILATGSTDK-----TVKLFDLRKISTALHTFDSHKEEVFQ 322 (424)
Q Consensus 249 dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~ 322 (424)
.+.|.+-|...... ..+ ..+..+|.+-+|+|+|+.+..+.+..+ .|++-|+++.+.-+..+...+..|..
T Consensus 328 ~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaipr 403 (912)
T TIGR02171 328 TGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPR 403 (912)
T ss_pred CCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccc
Confidence 35788888876553 222 346788999999999997665345444 58899998866666677767788888
Q ss_pred EEEcCCCCcEEEEE
Q 014472 323 VGWNPKNETILASC 336 (424)
Q Consensus 323 ~~~sp~~~~~l~s~ 336 (424)
-...++|...++-.
T Consensus 404 wrv~e~gdt~ivyv 417 (912)
T TIGR02171 404 WRVLENGDTVIVYV 417 (912)
T ss_pred eEecCCCCeEEEEE
Confidence 88888887655433
No 491
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=72.34 E-value=10 Score=19.89 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.2
Q ss_pred CceeEEEecCCCCcEEEEEecCCeEEEEe
Q 014472 126 GEVNRARYMPQNPFLIATKTVSAEVYVFD 154 (424)
Q Consensus 126 ~~v~~i~~~p~~~~~latg~~dg~v~iwd 154 (424)
..|.+++..+ .++|++.+.+.+|||.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577788765 4888889899999984
No 492
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=71.07 E-value=81 Score=28.58 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=32.4
Q ss_pred CcEEEEEeC-----CCeEEEEECCCCCCCCCeeEecccCCCeeEEEecCCCCeEEEEEeCCC----cEEEEECCC
Q 014472 240 EYLFGSVGD-----DQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDK----TVKLFDLRK 305 (424)
Q Consensus 240 ~~~~~s~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~~g~~dg----~i~iwd~~~ 305 (424)
..+++.|+. ...+..||+++.+- ..+..+.... .....+... +..+.+.|+.++ .+.+||+.+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEW-FELPDFPGEP-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCe-eECCCCCCCC-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCC
Confidence 457777764 23588899887552 2222111111 111111122 334788887664 356788875
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=70.00 E-value=29 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCcEEEEECCC
Q 014472 274 SEVNCLAFNPFNEWILATGSTDKTVKLFDLRK 305 (424)
Q Consensus 274 ~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~ 305 (424)
...+.|..+|+++.+.++....+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45678999999998888888889999998653
No 494
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.93 E-value=1e+02 Score=28.98 Aligned_cols=110 Identities=7% Similarity=-0.000 Sum_probs=60.1
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCcEEEEECCCCCC-----cceeecC--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEe
Q 014472 273 QSEVNCLAFNPFNEWILATGSTDKTVKLFDLRKIST-----ALHTFDS--HKEEVFQVGWNPKNETILASCCLGRRLMVW 345 (424)
Q Consensus 273 ~~~v~~i~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~iw 345 (424)
...++++.|.+++. +++++ ..|.+..=+ .. +. ....... ....+..+.|.+++. ++.++..|.+...
T Consensus 280 ~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~-d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s 353 (398)
T PLN00033 280 ARRIQNMGWRADGG-LWLLT-RGGGLYVSK-GT-GLTEEDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRS 353 (398)
T ss_pred ccceeeeeEcCCCC-EEEEe-CCceEEEec-CC-CCcccccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEe
Confidence 45789999999887 44444 566654322 22 22 1222221 124589999998875 4455667755544
Q ss_pred eCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 346 DLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
. ..++. .+....-..-...++.+.|.++++ .+++ +.+|.|.-|
T Consensus 354 ~-D~G~t-----------W~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 354 T-DGGKS-----------WKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred C-CCCcc-----------eeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 2 22211 011111111234577899988777 4555 567876554
No 495
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=68.24 E-value=1e+02 Score=28.50 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcCCCCCcceEEeCCCCCcEEEEEeCCCcEEEEecCCCCC
Q 014472 338 LGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409 (424)
Q Consensus 338 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~ 409 (424)
.+|++.-||..+.. ..++...-.-.+.++.+|++.++|++=..-..|+=+-++....
T Consensus 197 ~~GRl~~YD~~tK~---------------~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV---------------TKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA 253 (376)
T ss_pred CccceEEecCcccc---------------hhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc
Confidence 46777777766532 2222222234678999999996666555444444343554433
No 496
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=67.40 E-value=1.6e+02 Score=30.57 Aligned_cols=70 Identities=16% Similarity=-0.004 Sum_probs=44.3
Q ss_pred cceeeEEeeCCCCcEEEEEeCCCeEEEEECCCCCCCCCe----------eEec------ccCCCeeEEEecCCCCeEEEE
Q 014472 228 GVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPV----------QSVV------AHQSEVNCLAFNPFNEWILAT 291 (424)
Q Consensus 228 ~~v~~i~~~~~~~~~~~s~~~dg~i~i~d~~~~~~~~~~----------~~~~------~~~~~v~~i~~~~~~~~~l~~ 291 (424)
..|.++.....+. +++.+..||+|.++|..+.+..... ..+. ..-..+..++|+|.+- .++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEE
Confidence 4566777665554 6678899999999998775321111 1110 0112445688999886 5777
Q ss_pred EeCCCcEE
Q 014472 292 GSTDKTVK 299 (424)
Q Consensus 292 g~~dg~i~ 299 (424)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 77788765
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=66.32 E-value=84 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.582 Sum_probs=24.4
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAE 406 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 406 (424)
.|..++..+..+ ++++...+|.|++|++..
T Consensus 191 ~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRR-LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTT-EEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcC-EEEEEeCCCcEEEEEEeC
Confidence 489999988887 789999999999999975
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=66.20 E-value=1.1e+02 Score=28.41 Aligned_cols=192 Identities=13% Similarity=0.167 Sum_probs=103.9
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCcccceeeeecCCcceeeEEee----CCCCcE-EEEEe-CC---CeEEEEECCCCCCC
Q 014472 193 HLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWH----LRHEYL-FGSVG-DD---QYLLIWDLRTPSVS 263 (424)
Q Consensus 193 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~-~~s~~-~d---g~i~i~d~~~~~~~ 263 (424)
+++...+++-+.+||+.... ++.+. .+.++-+..- -.++.+ +|+++ .+ .+|++|.+.....
T Consensus 70 lIigTdK~~GL~VYdL~Gk~-------lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g- 139 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKE-------LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG- 139 (381)
T ss_dssp EEEEEETTTEEEEEETTS-E-------EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-
T ss_pred eEEEEeCCCCEEEEcCCCcE-------EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-
Confidence 68888888999999997542 22222 2333333221 123322 33443 22 4699997763211
Q ss_pred CCeeEecc-------cCCCeeEEEe--cC-CCCeEEEEEeCCCcEEEEECCCC--C----CcceeecCCCCCEEEEEEcC
Q 014472 264 KPVQSVVA-------HQSEVNCLAF--NP-FNEWILATGSTDKTVKLFDLRKI--S----TALHTFDSHKEEVFQVGWNP 327 (424)
Q Consensus 264 ~~~~~~~~-------~~~~v~~i~~--~~-~~~~~l~~g~~dg~i~iwd~~~~--~----~~~~~~~~~~~~v~~~~~sp 327 (424)
.+..+.. ....++.+|+ +| ++..+++....+|.+..|-+... + ..++.|.. ...+-.|....
T Consensus 140 -~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 -ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDD 217 (381)
T ss_dssp -EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET
T ss_pred -cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEec
Confidence 1222211 1234566665 33 46666777888999888877521 2 34666665 45788888887
Q ss_pred CCCcEEEEEeCCCeEEEeeCCCCCcccCCCccCCCCCeeeEEEcC--CCCCcceEEeC--CCC-CcEEEEEeCCCcEEEE
Q 014472 328 KNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGG--HTSKISDFSWN--PCE-DWVISSVAEDNILQIW 402 (424)
Q Consensus 328 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~--~~~-~~~l~s~~~d~~i~iw 402 (424)
... .|+.+-.+--|.-|+...... ....++....+ ...-|-.++.- .++ .|||+|.-.+++..||
T Consensus 218 e~g-~LYvgEE~~GIW~y~Aep~~~---------~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 218 ETG-RLYVGEEDVGIWRYDAEPEGG---------NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp TTT-EEEEEETTTEEEEEESSCCC----------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred ccC-CEEEecCccEEEEEecCCCCC---------CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 765 577888886565555543211 11233433332 23456666663 344 4688887788899999
Q ss_pred ecCC
Q 014472 403 QMAE 406 (424)
Q Consensus 403 ~~~~ 406 (424)
+...
T Consensus 288 ~r~~ 291 (381)
T PF02333_consen 288 DREG 291 (381)
T ss_dssp ESST
T ss_pred ecCC
Confidence 9875
No 499
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=59.36 E-value=1.3e+02 Score=26.82 Aligned_cols=31 Identities=13% Similarity=0.287 Sum_probs=25.9
Q ss_pred CcceEEeCCCCCcEEEEEeCCCcEEEEecCCC
Q 014472 376 KISDFSWNPCEDWVISSVAEDNILQIWQMAEN 407 (424)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~~~d~~i~iw~~~~~ 407 (424)
....++.+++|. ++++--..+.|..|+..+.
T Consensus 187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp SECEEEEETTTE-EEEEECCCTEEEEEETTTS
T ss_pred CCceEEECCCCc-EEEecCCCCeEEEEeCCCC
Confidence 456788899888 7888888999999999873
No 500
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=59.21 E-value=23 Score=18.51 Aligned_cols=25 Identities=4% Similarity=0.119 Sum_probs=18.1
Q ss_pred cceEEeCCCCCcEEEEEeCCCcEEEE
Q 014472 377 ISDFSWNPCEDWVISSVAEDNILQIW 402 (424)
Q Consensus 377 v~~~~~~~~~~~~l~s~~~d~~i~iw 402 (424)
..+++.+++|. ++++-....+|+++
T Consensus 4 P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred CcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 46788888888 67776777777664
Done!