Query 014475
Match_columns 424
No_of_seqs 745 out of 3533
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 05:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2E-53 4.3E-58 350.0 27.3 307 4-338 129-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 8E-52 1.7E-56 340.5 24.2 292 32-348 111-447 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-49 4.2E-54 330.4 21.3 279 35-338 174-458 (459)
4 KOG0286 G-protein beta subunit 100.0 4.3E-44 9.3E-49 285.1 31.0 280 33-338 52-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-45 5.4E-50 305.9 20.7 265 3-296 188-458 (459)
6 KOG0315 G-protein beta subunit 100.0 1.1E-42 2.4E-47 270.9 28.3 279 51-348 11-296 (311)
7 KOG0315 G-protein beta subunit 100.0 5.8E-42 1.3E-46 266.9 31.4 288 3-319 11-309 (311)
8 KOG0279 G protein beta subunit 100.0 7.1E-42 1.5E-46 270.8 29.2 282 34-340 13-313 (315)
9 KOG0284 Polyadenylation factor 100.0 9.4E-44 2E-48 295.3 16.1 278 37-340 97-380 (464)
10 KOG0273 Beta-transducin family 100.0 2.2E-41 4.7E-46 286.2 27.3 309 4-340 193-523 (524)
11 KOG0319 WD40-repeat-containing 100.0 1.7E-41 3.7E-46 301.6 27.4 325 3-351 118-588 (775)
12 KOG0318 WD40 repeat stress pro 100.0 7.8E-40 1.7E-44 280.4 33.3 324 3-341 72-561 (603)
13 KOG0273 Beta-transducin family 100.0 9E-41 1.9E-45 282.4 27.0 288 35-349 177-491 (524)
14 KOG0286 G-protein beta subunit 100.0 1E-39 2.2E-44 260.2 28.9 264 3-296 68-343 (343)
15 KOG0296 Angio-associated migra 100.0 1.9E-39 4E-44 266.2 29.2 308 3-340 77-398 (399)
16 KOG0285 Pleiotropic regulator 100.0 3.7E-40 8.1E-45 269.6 24.5 284 33-342 148-441 (460)
17 KOG0291 WD40-repeat-containing 100.0 4.4E-39 9.6E-44 286.8 32.8 318 3-348 278-620 (893)
18 KOG0295 WD40 repeat-containing 100.0 4.4E-40 9.4E-45 269.7 23.1 280 35-339 107-405 (406)
19 KOG0291 WD40-repeat-containing 100.0 1.2E-38 2.6E-43 284.0 33.6 314 4-344 203-554 (893)
20 KOG0279 G protein beta subunit 100.0 7.6E-39 1.7E-43 253.6 28.1 273 3-298 29-313 (315)
21 KOG0263 Transcription initiati 100.0 2E-40 4.4E-45 297.5 21.1 271 37-342 379-651 (707)
22 KOG0318 WD40 repeat stress pro 100.0 5.5E-38 1.2E-42 269.1 35.0 320 3-340 161-602 (603)
23 KOG0645 WD40 repeat protein [G 100.0 2.9E-38 6.3E-43 249.3 29.5 284 30-340 8-311 (312)
24 KOG0646 WD40 repeat protein [G 100.0 2.8E-38 6E-43 267.3 28.6 332 1-340 5-350 (476)
25 KOG0319 WD40-repeat-containing 100.0 7E-39 1.5E-43 285.0 25.8 313 11-342 301-621 (775)
26 KOG0293 WD40 repeat-containing 100.0 3.8E-39 8.2E-44 268.3 22.4 287 29-341 217-514 (519)
27 KOG0265 U5 snRNP-specific prot 100.0 3.5E-38 7.6E-43 252.3 26.1 286 31-338 42-336 (338)
28 cd00200 WD40 WD40 domain, foun 100.0 4.1E-37 8.9E-42 270.1 34.4 280 34-338 7-289 (289)
29 KOG0295 WD40 repeat-containing 100.0 1.8E-38 3.8E-43 260.3 22.8 269 2-297 120-405 (406)
30 KOG0266 WD40 repeat-containing 100.0 7.7E-38 1.7E-42 288.0 29.3 280 36-340 159-454 (456)
31 KOG0281 Beta-TrCP (transducin 100.0 9.2E-39 2E-43 260.7 16.8 284 26-344 187-481 (499)
32 KOG0263 Transcription initiati 100.0 1E-37 2.2E-42 280.2 24.7 285 4-328 392-703 (707)
33 KOG0276 Vesicle coat complex C 100.0 1.1E-37 2.4E-42 272.4 24.0 280 35-337 12-296 (794)
34 PLN00181 protein SPA1-RELATED; 100.0 2.1E-36 4.6E-41 298.9 36.3 307 12-339 457-792 (793)
35 KOG0316 Conserved WD40 repeat- 100.0 5.2E-37 1.1E-41 237.5 24.3 279 34-339 15-298 (307)
36 KOG0313 Microtubule binding pr 100.0 2.5E-37 5.4E-42 254.9 23.8 292 34-340 103-418 (423)
37 KOG0645 WD40 repeat protein [G 100.0 2.2E-36 4.9E-41 238.7 27.9 272 3-298 28-311 (312)
38 KOG0284 Polyadenylation factor 100.0 1.8E-38 3.9E-43 263.9 15.7 268 3-298 109-380 (464)
39 KOG0282 mRNA splicing factor [ 100.0 3.9E-38 8.4E-43 267.5 17.6 283 33-338 211-503 (503)
40 KOG0285 Pleiotropic regulator 100.0 3.1E-37 6.6E-42 252.6 22.2 256 77-356 148-405 (460)
41 KOG0296 Angio-associated migra 100.0 1.6E-35 3.5E-40 243.1 26.7 296 33-347 61-363 (399)
42 KOG0306 WD40-repeat-containing 100.0 1.3E-35 2.8E-40 264.6 27.6 329 3-351 78-633 (888)
43 KOG0265 U5 snRNP-specific prot 100.0 6.4E-36 1.4E-40 239.4 22.3 259 75-354 42-310 (338)
44 KOG0306 WD40-repeat-containing 100.0 2.6E-35 5.6E-40 262.8 28.5 317 11-345 342-669 (888)
45 KOG0275 Conserved WD40 repeat- 100.0 1.1E-36 2.4E-41 246.5 17.8 274 39-338 216-507 (508)
46 KOG0282 mRNA splicing factor [ 100.0 2E-36 4.4E-41 257.0 18.7 266 3-296 228-503 (503)
47 KOG0292 Vesicle coat complex C 100.0 1.8E-35 3.9E-40 268.1 24.8 282 37-342 10-323 (1202)
48 KOG0278 Serine/threonine kinas 100.0 3.5E-36 7.7E-41 234.9 16.1 288 31-345 9-302 (334)
49 KOG0277 Peroxisomal targeting 100.0 3.1E-35 6.8E-40 230.1 21.4 259 61-339 38-308 (311)
50 KOG0266 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 266.6 29.0 254 79-351 158-420 (456)
51 KOG0281 Beta-TrCP (transducin 100.0 8.8E-36 1.9E-40 243.3 15.4 269 4-303 209-482 (499)
52 KOG0310 Conserved WD40 repeat- 100.0 4.5E-34 9.7E-39 243.2 26.3 287 35-347 25-316 (487)
53 cd00200 WD40 WD40 domain, foun 100.0 2.5E-33 5.4E-38 246.0 32.3 265 3-296 22-289 (289)
54 KOG0276 Vesicle coat complex C 100.0 1.4E-33 3.1E-38 246.9 27.1 276 4-307 27-307 (794)
55 KOG0316 Conserved WD40 repeat- 100.0 9E-34 2E-38 219.6 20.8 249 73-347 10-264 (307)
56 KOG0293 WD40 repeat-containing 100.0 5.9E-34 1.3E-38 237.5 21.1 269 3-299 237-514 (519)
57 KOG0643 Translation initiation 100.0 9.7E-34 2.1E-38 223.4 20.9 288 33-340 7-317 (327)
58 KOG0292 Vesicle coat complex C 100.0 6.6E-34 1.4E-38 258.1 22.0 256 80-348 9-288 (1202)
59 KOG1539 WD repeat protein [Gen 100.0 1.9E-32 4.1E-37 247.3 30.2 347 3-373 173-653 (910)
60 PLN00181 protein SPA1-RELATED; 100.0 1.6E-32 3.5E-37 271.4 32.6 260 61-342 458-740 (793)
61 KOG0283 WD40 repeat-containing 100.0 1E-33 2.2E-38 256.6 21.3 250 78-342 265-578 (712)
62 KOG0305 Anaphase promoting com 100.0 8.7E-33 1.9E-37 244.2 26.0 270 46-342 185-463 (484)
63 KOG0268 Sof1-like rRNA process 100.0 4.9E-34 1.1E-38 234.2 16.6 286 32-346 62-351 (433)
64 KOG0313 Microtubule binding pr 100.0 2.2E-32 4.7E-37 225.9 25.6 268 3-298 116-418 (423)
65 KOG0275 Conserved WD40 repeat- 100.0 8.9E-34 1.9E-38 229.7 16.9 268 3-296 226-507 (508)
66 KOG0288 WD40 repeat protein Ti 100.0 1.7E-33 3.7E-38 234.8 18.6 276 35-338 174-459 (459)
67 KOG1408 WD40 repeat protein [F 100.0 9.8E-33 2.1E-37 245.2 23.2 313 11-342 344-715 (1080)
68 KOG1407 WD40 repeat protein [F 100.0 7.5E-32 1.6E-36 212.1 25.5 271 34-332 18-294 (313)
69 KOG0973 Histone transcription 100.0 1.3E-32 2.9E-37 255.7 25.1 283 37-344 14-359 (942)
70 KOG0294 WD40 repeat-containing 100.0 1.1E-31 2.3E-36 216.7 25.1 239 78-342 41-283 (362)
71 KOG0643 Translation initiation 100.0 1.7E-31 3.7E-36 210.7 25.0 278 3-299 23-318 (327)
72 KOG0299 U3 snoRNP-associated p 100.0 5.7E-32 1.2E-36 228.8 23.5 290 30-337 136-453 (479)
73 KOG0641 WD40 repeat protein [G 100.0 2.3E-30 5E-35 199.7 30.1 278 37-340 33-349 (350)
74 KOG0278 Serine/threonine kinas 100.0 1E-32 2.2E-37 215.6 17.1 269 3-302 30-301 (334)
75 KOG0772 Uncharacterized conser 100.0 5.1E-32 1.1E-36 232.1 21.8 285 35-338 166-485 (641)
76 KOG0647 mRNA export protein (c 100.0 2.3E-31 4.9E-36 213.6 23.8 280 28-328 19-311 (347)
77 KOG0305 Anaphase promoting com 100.0 2.3E-31 4.9E-36 235.3 26.2 267 3-300 189-463 (484)
78 KOG0274 Cdc4 and related F-box 100.0 2.6E-31 5.6E-36 243.9 27.2 279 36-348 208-490 (537)
79 KOG1036 Mitotic spindle checkp 100.0 3.2E-31 6.9E-36 213.5 24.0 277 33-330 10-294 (323)
80 KOG1407 WD40 repeat protein [F 100.0 2.4E-31 5.1E-36 209.3 21.7 245 77-344 17-265 (313)
81 KOG0289 mRNA splicing factor [ 100.0 9E-31 1.9E-35 219.9 25.5 268 3-297 232-505 (506)
82 KOG0277 Peroxisomal targeting 100.0 1.6E-31 3.4E-36 209.4 19.2 263 12-297 37-308 (311)
83 PTZ00421 coronin; Provisional 100.0 6.9E-30 1.5E-34 234.3 33.2 254 46-321 28-314 (493)
84 KOG0640 mRNA cleavage stimulat 100.0 2E-31 4.4E-36 214.7 19.0 284 35-340 111-426 (430)
85 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-29 5.9E-34 203.4 31.1 279 36-343 14-306 (311)
86 KOG1446 Histone H3 (Lys4) meth 100.0 8.5E-30 1.8E-34 206.3 27.8 254 79-350 13-272 (311)
87 KOG0264 Nucleosome remodeling 100.0 5.5E-31 1.2E-35 222.7 21.8 254 75-341 119-405 (422)
88 KOG1539 WD repeat protein [Gen 100.0 1.6E-30 3.6E-35 234.9 25.5 320 3-340 215-648 (910)
89 KOG0274 Cdc4 and related F-box 100.0 3E-30 6.6E-35 236.8 27.7 271 3-310 219-494 (537)
90 KOG0289 mRNA splicing factor [ 100.0 6.3E-30 1.4E-34 214.8 26.1 282 35-339 218-505 (506)
91 KOG0308 Conserved WD40 repeat- 100.0 9.1E-31 2E-35 230.4 20.9 289 48-349 35-336 (735)
92 KOG0639 Transducin-like enhanc 100.0 6.5E-31 1.4E-35 224.7 19.1 277 35-339 418-703 (705)
93 KOG0300 WD40 repeat-containing 100.0 1.5E-30 3.2E-35 210.5 20.1 273 3-300 161-478 (481)
94 PTZ00421 coronin; Provisional 100.0 1.7E-29 3.6E-34 231.8 29.1 250 81-344 21-294 (493)
95 PTZ00420 coronin; Provisional 100.0 3E-29 6.6E-34 231.0 30.8 233 98-343 50-296 (568)
96 KOG1332 Vesicle coat complex C 100.0 1E-30 2.2E-35 203.7 17.1 252 75-342 6-288 (299)
97 KOG0283 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 229.7 24.0 239 34-300 265-578 (712)
98 KOG0294 WD40 repeat-containing 100.0 1.7E-28 3.8E-33 198.2 26.4 267 3-300 2-283 (362)
99 KOG2106 Uncharacterized conser 100.0 1.1E-27 2.3E-32 205.2 31.3 309 11-343 178-524 (626)
100 KOG0300 WD40 repeat-containing 100.0 2.1E-29 4.5E-34 203.9 19.5 259 77-346 145-434 (481)
101 KOG1036 Mitotic spindle checkp 100.0 1.9E-28 4E-33 197.6 24.7 253 74-351 7-273 (323)
102 KOG0640 mRNA cleavage stimulat 100.0 2.8E-29 6E-34 202.4 19.6 271 3-298 125-426 (430)
103 KOG0647 mRNA export protein (c 100.0 1.2E-28 2.7E-33 197.9 23.3 249 74-343 21-284 (347)
104 PTZ00420 coronin; Provisional 100.0 4.8E-28 1E-32 223.1 30.4 245 7-280 49-317 (568)
105 KOG0301 Phospholipase A2-activ 100.0 1.6E-28 3.5E-33 217.9 25.4 279 24-342 5-290 (745)
106 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.5E-27 9.7E-32 208.2 34.8 286 2-320 1-300 (300)
107 KOG0310 Conserved WD40 repeat- 100.0 3.2E-29 7E-34 213.8 19.7 243 79-344 25-272 (487)
108 KOG0288 WD40 repeat protein Ti 100.0 3.2E-30 6.9E-35 215.3 13.3 247 77-348 172-425 (459)
109 KOG0299 U3 snoRNP-associated p 100.0 1.2E-28 2.5E-33 208.9 22.1 247 73-342 135-412 (479)
110 KOG0308 Conserved WD40 repeat- 100.0 2.8E-29 6.1E-34 221.1 17.7 237 85-341 29-286 (735)
111 KOG2445 Nuclear pore complex c 100.0 9.3E-28 2E-32 193.4 24.8 263 75-345 8-323 (361)
112 KOG0268 Sof1-like rRNA process 100.0 2E-29 4.4E-34 207.2 14.5 269 4-306 81-353 (433)
113 KOG0772 Uncharacterized conser 100.0 1.8E-28 3.9E-33 210.5 20.2 269 3-296 180-485 (641)
114 KOG4378 Nuclear protein COP1 [ 100.0 7.2E-28 1.6E-32 205.9 22.8 295 1-322 2-305 (673)
115 KOG0264 Nucleosome remodeling 100.0 6.2E-28 1.4E-32 204.3 20.9 252 35-298 123-404 (422)
116 KOG2055 WD40 repeat protein [G 100.0 2.5E-27 5.4E-32 200.8 23.8 287 34-340 211-512 (514)
117 KOG0301 Phospholipase A2-activ 100.0 4.3E-27 9.4E-32 208.8 24.5 260 3-299 26-289 (745)
118 KOG1063 RNA polymerase II elon 100.0 8.5E-27 1.8E-31 206.9 25.3 319 2-342 206-650 (764)
119 KOG1408 WD40 repeat protein [F 100.0 2.8E-27 6E-32 210.8 21.7 276 3-299 393-714 (1080)
120 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.4E-25 3E-30 198.7 32.1 271 51-347 2-286 (300)
121 KOG0269 WD40 repeat-containing 100.0 7.6E-28 1.6E-32 216.1 17.2 275 46-342 47-342 (839)
122 KOG4283 Transcription-coupled 100.0 3.4E-26 7.3E-31 183.5 24.4 289 3-340 57-365 (397)
123 KOG0321 WD40 repeat-containing 100.0 6.5E-27 1.4E-31 205.8 21.9 321 1-340 63-445 (720)
124 KOG0973 Histone transcription 100.0 1.1E-26 2.4E-31 216.5 24.5 259 77-346 10-318 (942)
125 KOG2106 Uncharacterized conser 100.0 4.8E-25 1E-29 189.1 30.4 324 3-358 214-599 (626)
126 KOG1445 Tumor-specific antigen 100.0 5E-27 1.1E-31 206.5 18.8 123 220-344 629-754 (1012)
127 KOG0267 Microtubule severing p 100.0 2.5E-28 5.4E-33 217.6 10.7 246 61-333 14-261 (825)
128 KOG0641 WD40 repeat protein [G 100.0 1.4E-24 3E-29 167.9 29.5 272 4-298 46-349 (350)
129 KOG1274 WD40 repeat protein [G 100.0 7E-26 1.5E-30 207.4 25.7 273 34-337 11-297 (933)
130 KOG1332 Vesicle coat complex C 99.9 1.6E-26 3.5E-31 180.4 17.8 232 3-250 24-288 (299)
131 KOG1273 WD40 repeat protein [G 99.9 1.2E-25 2.6E-30 182.0 21.6 290 39-344 26-326 (405)
132 KOG0639 Transducin-like enhanc 99.9 3.1E-26 6.6E-31 196.3 18.9 264 4-297 433-703 (705)
133 KOG2048 WD40 repeat protein [G 99.9 1.5E-24 3.3E-29 192.4 29.3 278 3-299 38-320 (691)
134 KOG2048 WD40 repeat protein [G 99.9 7E-25 1.5E-29 194.5 26.8 280 35-341 24-320 (691)
135 KOG0646 WD40 repeat protein [G 99.9 1.7E-25 3.7E-30 190.1 22.0 268 58-349 15-316 (476)
136 KOG0267 Microtubule severing p 99.9 7.3E-27 1.6E-31 208.3 13.6 246 11-290 12-260 (825)
137 KOG2096 WD40 repeat protein [G 99.9 9.2E-25 2E-29 177.1 23.9 285 33-338 83-400 (420)
138 KOG0650 WD40 repeat nucleolar 99.9 1.8E-25 4E-30 195.4 21.1 279 34-338 398-733 (733)
139 KOG0269 WD40 repeat-containing 99.9 2E-26 4.4E-31 207.0 15.4 235 46-301 95-343 (839)
140 KOG0307 Vesicle coat complex C 99.9 2.1E-26 4.6E-31 215.7 15.2 265 61-343 39-330 (1049)
141 KOG4283 Transcription-coupled 99.9 2.3E-25 5E-30 178.7 18.3 215 119-343 40-279 (397)
142 KOG2445 Nuclear pore complex c 99.9 3.5E-24 7.7E-29 172.9 24.9 265 34-307 11-330 (361)
143 KOG1063 RNA polymerase II elon 99.9 1.6E-24 3.4E-29 192.7 25.0 326 4-340 281-699 (764)
144 KOG0270 WD40 repeat-containing 99.9 5.1E-25 1.1E-29 186.1 20.8 278 46-343 133-452 (463)
145 KOG4328 WD40 protein [Function 99.9 6.6E-25 1.4E-29 186.1 21.4 290 35-340 185-495 (498)
146 KOG1274 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 197.8 26.1 254 75-344 8-266 (933)
147 KOG2096 WD40 repeat protein [G 99.9 1.6E-24 3.5E-29 175.7 21.9 272 3-296 99-400 (420)
148 KOG2919 Guanine nucleotide-bin 99.9 1.2E-24 2.6E-29 176.7 21.2 272 45-330 56-360 (406)
149 KOG0302 Ribosome Assembly prot 99.9 9.4E-25 2E-29 180.8 19.2 241 78-333 149-432 (440)
150 KOG0321 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 192.0 20.7 285 49-342 62-393 (720)
151 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-24 4.1E-29 185.1 19.1 256 3-285 48-309 (673)
152 KOG1188 WD40 repeat protein [G 99.9 2.7E-24 5.9E-29 176.0 19.0 280 1-297 39-345 (376)
153 KOG0650 WD40 repeat nucleolar 99.9 5.2E-24 1.1E-28 186.4 21.1 272 3-295 413-732 (733)
154 KOG0270 WD40 repeat-containing 99.9 4.7E-24 1E-28 180.4 17.8 236 49-304 191-455 (463)
155 KOG0302 Ribosome Assembly prot 99.9 7E-24 1.5E-28 175.7 18.1 216 119-342 148-380 (440)
156 KOG2055 WD40 repeat protein [G 99.9 2.6E-23 5.7E-28 176.6 21.5 248 80-347 213-474 (514)
157 KOG1273 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 170.0 19.0 243 83-348 26-288 (405)
158 KOG1009 Chromatin assembly com 99.9 7.4E-23 1.6E-27 171.3 21.1 284 37-345 14-377 (434)
159 KOG4328 WD40 protein [Function 99.9 6.5E-23 1.4E-27 174.1 20.7 274 3-298 201-495 (498)
160 KOG1007 WD repeat protein TSSC 99.9 8.8E-23 1.9E-27 163.5 20.1 266 60-340 39-361 (370)
161 KOG1034 Transcriptional repres 99.9 8.2E-23 1.8E-27 166.5 17.9 288 34-340 36-383 (385)
162 KOG1587 Cytoplasmic dynein int 99.9 6.6E-22 1.4E-26 180.6 24.0 273 61-342 222-518 (555)
163 KOG1034 Transcriptional repres 99.9 3.5E-22 7.6E-27 162.9 18.6 281 3-298 56-383 (385)
164 COG2319 FOG: WD40 repeat [Gene 99.9 1.2E-19 2.7E-24 168.8 38.4 315 4-348 79-408 (466)
165 KOG0642 Cell-cycle nuclear pro 99.9 9.1E-23 2E-27 177.7 15.8 261 78-344 292-565 (577)
166 KOG1538 Uncharacterized conser 99.9 8.8E-22 1.9E-26 174.8 21.0 270 38-343 14-296 (1081)
167 KOG1538 Uncharacterized conser 99.9 1.2E-21 2.6E-26 174.0 21.0 263 2-298 26-293 (1081)
168 KOG1188 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 164.4 15.0 231 93-340 41-346 (376)
169 KOG0307 Vesicle coat complex C 99.9 1.7E-22 3.7E-27 189.8 15.2 268 11-301 37-330 (1049)
170 COG2319 FOG: WD40 repeat [Gene 99.9 3.3E-19 7.1E-24 165.9 34.7 286 34-343 63-362 (466)
171 KOG4227 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 156.9 22.2 287 34-340 54-387 (609)
172 KOG1445 Tumor-specific antigen 99.9 7.1E-21 1.5E-25 168.2 19.3 156 178-343 630-801 (1012)
173 KOG0322 G-protein beta subunit 99.9 9.5E-21 2.1E-25 150.1 17.5 297 25-339 6-322 (323)
174 KOG1517 Guanine nucleotide bin 99.9 2.6E-20 5.6E-25 173.5 23.2 284 1-301 1075-1384(1387)
175 KOG1963 WD40 repeat protein [G 99.9 1.7E-19 3.7E-24 165.4 27.4 318 12-341 180-539 (792)
176 KOG0290 Conserved WD40 repeat- 99.9 3.1E-20 6.7E-25 149.2 19.7 272 37-330 45-356 (364)
177 KOG2919 Guanine nucleotide-bin 99.9 6.9E-21 1.5E-25 155.1 16.0 222 3-239 124-361 (406)
178 KOG0303 Actin-binding protein 99.9 4.2E-20 9.2E-25 154.4 20.6 213 117-344 76-298 (472)
179 KOG1007 WD repeat protein TSSC 99.9 4.9E-20 1.1E-24 147.9 20.0 274 11-299 38-362 (370)
180 PRK11028 6-phosphogluconolacto 99.9 1E-18 2.2E-23 156.2 29.3 264 60-340 11-304 (330)
181 KOG0649 WD40 repeat protein [G 99.9 4.9E-19 1.1E-23 138.8 21.5 251 82-342 12-276 (325)
182 KOG1587 Cytoplasmic dynein int 99.8 4.3E-19 9.3E-24 162.3 23.7 270 12-299 221-517 (555)
183 PRK11028 6-phosphogluconolacto 99.8 3.9E-18 8.4E-23 152.6 29.4 268 11-298 10-304 (330)
184 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-20 6E-25 162.3 14.4 255 33-310 291-573 (577)
185 KOG1524 WD40 repeat-containing 99.8 1.2E-19 2.5E-24 157.5 17.9 262 35-337 13-283 (737)
186 KOG1517 Guanine nucleotide bin 99.8 6.4E-19 1.4E-23 164.4 23.3 276 46-343 1072-1384(1387)
187 KOG4497 Uncharacterized conser 99.8 6.3E-19 1.4E-23 144.2 20.3 289 3-333 62-425 (447)
188 KOG1963 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 159.7 24.0 339 2-346 217-589 (792)
189 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.6E-23 146.3 20.9 286 3-303 27-377 (434)
190 KOG2110 Uncharacterized conser 99.8 6.1E-18 1.3E-22 140.5 24.9 234 81-343 6-251 (391)
191 KOG1310 WD40 repeat protein [G 99.8 4.8E-19 1E-23 154.2 18.9 214 33-251 47-306 (758)
192 KOG1240 Protein kinase contain 99.8 1.5E-18 3.3E-23 164.3 23.7 304 18-338 1034-1431(1431)
193 PF02239 Cytochrom_D1: Cytochr 99.8 2.8E-17 6E-22 146.5 30.7 323 2-346 6-353 (369)
194 KOG0303 Actin-binding protein 99.8 3.7E-19 8.1E-24 148.8 17.4 245 75-342 76-339 (472)
195 KOG0649 WD40 repeat protein [G 99.8 1E-17 2.2E-22 131.5 24.2 267 3-295 23-313 (325)
196 KOG1334 WD40 repeat protein [G 99.8 1.4E-19 2.9E-24 155.4 14.6 299 34-344 140-470 (559)
197 KOG1523 Actin-related protein 99.8 2.2E-18 4.7E-23 140.5 20.5 244 79-333 9-271 (361)
198 KOG2110 Uncharacterized conser 99.8 1.4E-16 3.1E-21 132.5 29.4 281 4-309 19-343 (391)
199 KOG0290 Conserved WD40 repeat- 99.8 6.8E-18 1.5E-22 135.8 20.6 237 34-288 94-356 (364)
200 KOG0644 Uncharacterized conser 99.8 1.5E-19 3.3E-24 164.5 11.7 280 34-343 188-471 (1113)
201 KOG0322 G-protein beta subunit 99.8 1.3E-18 2.9E-23 138.0 15.4 273 4-297 27-322 (323)
202 KOG4227 WD40 repeat protein [G 99.8 9.7E-18 2.1E-22 140.4 20.2 255 78-347 54-329 (609)
203 PRK01742 tolB translocation pr 99.8 9.1E-18 2E-22 154.7 22.3 230 61-321 184-426 (429)
204 KOG1523 Actin-related protein 99.8 1.6E-17 3.5E-22 135.5 20.3 233 37-289 11-269 (361)
205 KOG1240 Protein kinase contain 99.8 2.2E-17 4.8E-22 156.5 24.3 267 66-344 1034-1338(1431)
206 KOG1272 WD40-repeat-containing 99.8 2.5E-19 5.5E-24 152.8 9.8 231 80-339 129-361 (545)
207 PRK01742 tolB translocation pr 99.8 9.3E-18 2E-22 154.6 20.3 237 12-279 183-425 (429)
208 KOG0644 Uncharacterized conser 99.8 1.6E-19 3.5E-24 164.4 8.3 237 78-347 188-433 (1113)
209 KOG1524 WD40 repeat-containing 99.8 8.5E-18 1.8E-22 146.1 18.2 208 50-295 75-283 (737)
210 KOG0771 Prolactin regulatory e 99.8 3.3E-18 7.1E-23 144.6 14.1 198 126-341 148-355 (398)
211 KOG0771 Prolactin regulatory e 99.8 1.1E-17 2.4E-22 141.4 16.4 198 84-299 148-355 (398)
212 KOG2111 Uncharacterized conser 99.8 2.1E-16 4.5E-21 129.1 23.0 236 82-344 7-260 (346)
213 KOG4497 Uncharacterized conser 99.8 6.7E-17 1.4E-21 132.4 18.2 282 46-344 16-395 (447)
214 KOG2321 WD40 repeat protein [G 99.8 1E-16 2.2E-21 140.6 19.4 299 13-340 7-343 (703)
215 KOG2315 Predicted translation 99.7 1.2E-15 2.7E-20 133.7 24.7 319 4-344 4-394 (566)
216 KOG1310 WD40 repeat protein [G 99.7 1.9E-17 4.2E-22 144.3 13.3 223 114-347 42-310 (758)
217 KOG1272 WD40-repeat-containing 99.7 2E-17 4.3E-22 141.4 12.8 267 5-300 144-411 (545)
218 KOG2139 WD40 repeat protein [G 99.7 3.3E-15 7.2E-20 124.1 25.2 283 39-340 101-431 (445)
219 KOG2394 WD40 protein DMR-N9 [G 99.7 1.3E-15 2.8E-20 132.7 23.4 246 83-346 126-458 (636)
220 KOG1334 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 137.7 16.3 258 78-344 140-428 (559)
221 PRK03629 tolB translocation pr 99.7 2.7E-15 5.8E-20 138.1 26.0 233 61-320 179-427 (429)
222 KOG3881 Uncharacterized conser 99.7 5.8E-16 1.3E-20 129.8 18.5 247 80-345 55-325 (412)
223 PRK02889 tolB translocation pr 99.7 4.8E-15 1E-19 136.5 25.7 236 61-321 176-425 (427)
224 KOG2139 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 121.9 24.1 269 4-297 112-430 (445)
225 KOG2111 Uncharacterized conser 99.7 2.5E-14 5.4E-19 117.1 26.0 227 4-251 19-259 (346)
226 KOG2394 WD40 protein DMR-N9 [G 99.7 8E-16 1.7E-20 134.0 18.0 220 46-278 131-383 (636)
227 PRK03629 tolB translocation pr 99.7 8.2E-15 1.8E-19 134.8 25.9 235 13-279 179-427 (429)
228 PRK04922 tolB translocation pr 99.7 1E-14 2.2E-19 134.8 24.8 233 61-320 184-432 (433)
229 PF02239 Cytochrom_D1: Cytochr 99.7 1.4E-14 3E-19 129.3 23.7 281 4-307 50-356 (369)
230 PRK05137 tolB translocation pr 99.7 3E-14 6.5E-19 131.9 25.7 232 61-320 182-432 (435)
231 PRK02889 tolB translocation pr 99.7 1.7E-14 3.6E-19 132.9 23.4 238 12-279 175-424 (427)
232 PRK04922 tolB translocation pr 99.7 1.3E-14 2.9E-19 134.1 22.4 235 13-279 184-432 (433)
233 KOG3881 Uncharacterized conser 99.6 2.1E-14 4.6E-19 120.6 16.1 208 4-230 117-343 (412)
234 PRK05137 tolB translocation pr 99.6 2.8E-13 6.1E-18 125.5 25.0 214 102-342 182-414 (435)
235 TIGR03300 assembly_YfgL outer 99.6 1.2E-12 2.6E-17 119.4 28.3 303 4-337 67-376 (377)
236 PF08662 eIF2A: Eukaryotic tra 99.6 8E-14 1.7E-18 113.1 17.2 131 200-344 38-183 (194)
237 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-13 3.2E-18 111.6 18.5 150 84-250 9-181 (194)
238 COG5354 Uncharacterized protei 99.6 1.5E-12 3.2E-17 113.3 24.9 297 16-345 15-400 (561)
239 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.9E-11 6.4E-16 105.6 32.6 262 13-307 27-339 (352)
240 PF10282 Lactonase: Lactonase, 99.6 3.6E-11 7.8E-16 107.8 33.5 288 13-318 13-345 (345)
241 KOG1354 Serine/threonine prote 99.6 2.7E-13 5.9E-18 112.2 17.7 259 79-341 24-360 (433)
242 KOG0974 WD-repeat protein WDR6 99.6 2.9E-12 6.4E-17 120.7 26.8 187 3-208 100-289 (967)
243 KOG2321 WD40 repeat protein [G 99.6 7.1E-13 1.5E-17 116.9 21.0 277 2-300 64-345 (703)
244 TIGR02800 propeller_TolB tol-p 99.6 1.6E-12 3.5E-17 120.5 24.8 231 61-318 170-416 (417)
245 KOG0280 Uncharacterized conser 99.6 6.9E-13 1.5E-17 107.6 18.7 270 12-300 45-335 (339)
246 KOG0280 Uncharacterized conser 99.6 1.2E-12 2.5E-17 106.3 19.9 262 61-342 46-335 (339)
247 COG2706 3-carboxymuconate cycl 99.6 7.3E-11 1.6E-15 99.2 30.9 286 1-304 1-329 (346)
248 KOG1409 Uncharacterized conser 99.6 4.3E-13 9.3E-18 111.1 17.4 229 3-251 37-273 (404)
249 KOG1354 Serine/threonine prote 99.5 2.9E-13 6.2E-18 112.1 15.7 249 36-301 25-362 (433)
250 PRK00178 tolB translocation pr 99.5 3.8E-12 8.2E-17 118.2 25.4 234 61-321 179-428 (430)
251 KOG0974 WD-repeat protein WDR6 99.5 3.8E-13 8.1E-18 126.5 17.6 194 81-299 88-289 (967)
252 PRK04792 tolB translocation pr 99.5 4.5E-12 9.7E-17 117.3 24.8 233 61-320 198-446 (448)
253 TIGR02800 propeller_TolB tol-p 99.5 4.1E-12 8.9E-17 117.8 23.9 216 12-249 169-398 (417)
254 KOG1064 RAVE (regulator of V-A 99.5 1.5E-13 3.3E-18 135.5 14.0 190 35-251 2207-2401(2439)
255 PRK01029 tolB translocation pr 99.5 1.8E-11 3.8E-16 112.5 26.5 241 13-279 165-424 (428)
256 PRK00178 tolB translocation pr 99.5 1E-11 2.2E-16 115.3 25.1 234 14-279 180-427 (430)
257 KOG4547 WD40 repeat-containing 99.5 4.7E-12 1E-16 112.4 20.6 189 3-208 6-221 (541)
258 PF10282 Lactonase: Lactonase, 99.5 1.5E-10 3.3E-15 103.7 30.8 268 61-340 13-322 (345)
259 KOG1409 Uncharacterized conser 99.5 2.1E-12 4.4E-17 107.1 17.0 250 77-344 21-274 (404)
260 PF04762 IKI3: IKI3 family; I 99.5 1.9E-10 4.1E-15 114.0 33.7 282 35-342 74-458 (928)
261 KOG1912 WD40 repeat protein [G 99.5 7.3E-12 1.6E-16 114.5 21.0 326 2-342 79-508 (1062)
262 PRK04792 tolB translocation pr 99.5 2.2E-11 4.7E-16 112.7 24.1 234 14-279 199-446 (448)
263 PRK01029 tolB translocation pr 99.5 7.5E-11 1.6E-15 108.3 27.1 240 61-322 165-426 (428)
264 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.9E-10 8.5E-15 98.6 29.7 266 61-346 27-336 (352)
265 KOG2314 Translation initiation 99.5 2.4E-11 5.2E-16 107.0 22.0 312 3-344 223-577 (698)
266 KOG4547 WD40 repeat-containing 99.5 1.1E-11 2.4E-16 110.0 20.1 191 132-341 3-221 (541)
267 KOG2041 WD40 repeat protein [G 99.5 4.1E-11 8.8E-16 108.8 23.6 280 2-298 26-337 (1189)
268 KOG1064 RAVE (regulator of V-A 99.5 1.5E-12 3.3E-17 128.7 15.7 221 51-307 2181-2407(2439)
269 COG5354 Uncharacterized protei 99.5 1.5E-10 3.2E-15 101.2 26.0 283 13-332 108-421 (561)
270 COG2706 3-carboxymuconate cycl 99.4 1.2E-09 2.7E-14 91.9 27.5 268 61-340 16-321 (346)
271 KOG4532 WD40-like repeat conta 99.4 1.6E-10 3.4E-15 92.9 19.7 235 3-249 85-332 (344)
272 KOG2315 Predicted translation 99.4 3E-10 6.6E-15 100.4 23.2 275 13-321 105-411 (566)
273 KOG2314 Translation initiation 99.4 2.7E-10 5.8E-15 100.6 22.2 251 13-290 282-559 (698)
274 COG4946 Uncharacterized protei 99.4 1.4E-09 3.1E-14 94.4 26.2 208 12-237 286-507 (668)
275 KOG2041 WD40 repeat protein [G 99.4 1.5E-10 3.2E-15 105.3 20.8 276 37-341 15-338 (1189)
276 PRK11138 outer membrane biogen 99.4 1.6E-09 3.4E-14 99.4 27.5 310 4-339 71-393 (394)
277 PF04762 IKI3: IKI3 family; I 99.3 1.8E-09 3.9E-14 107.2 28.5 311 11-340 95-519 (928)
278 KOG0309 Conserved WD40 repeat- 99.3 1.4E-11 3.1E-16 112.0 12.4 280 38-341 26-340 (1081)
279 TIGR03300 assembly_YfgL outer 99.3 3.4E-09 7.4E-14 96.8 27.7 267 49-344 64-342 (377)
280 KOG4190 Uncharacterized conser 99.3 1.6E-11 3.4E-16 108.3 10.6 239 77-337 732-985 (1034)
281 PLN02919 haloacid dehalogenase 99.3 8.4E-09 1.8E-13 104.5 30.1 255 46-302 575-892 (1057)
282 COG4946 Uncharacterized protei 99.3 7.3E-09 1.6E-13 90.1 24.3 214 87-327 273-505 (668)
283 KOG3914 WD repeat protein WDR4 99.3 1.3E-10 2.8E-15 98.7 13.2 167 125-307 65-232 (390)
284 PLN02919 haloacid dehalogenase 99.3 7.3E-09 1.6E-13 105.0 27.8 240 5-251 583-891 (1057)
285 KOG4532 WD40-like repeat conta 99.2 5.6E-09 1.2E-13 84.2 20.2 245 61-328 52-320 (344)
286 PF08450 SGL: SMP-30/Gluconola 99.2 6.5E-08 1.4E-12 82.7 28.3 223 85-327 4-242 (246)
287 KOG1912 WD40 repeat protein [G 99.2 3.3E-09 7.1E-14 97.6 20.8 247 79-341 14-305 (1062)
288 KOG4714 Nucleoporin [Nuclear s 99.2 4.7E-10 1E-14 89.9 13.4 193 1-208 46-255 (319)
289 KOG4714 Nucleoporin [Nuclear s 99.2 5E-10 1.1E-14 89.7 13.4 196 83-299 39-255 (319)
290 PF15492 Nbas_N: Neuroblastoma 99.2 5.3E-08 1.2E-12 79.8 25.0 235 85-344 2-263 (282)
291 KOG4190 Uncharacterized conser 99.2 4.2E-11 9.1E-16 105.7 7.4 215 115-342 728-950 (1034)
292 COG5170 CDC55 Serine/threonine 99.2 8.7E-10 1.9E-14 90.6 14.3 258 79-340 25-367 (460)
293 PF13360 PQQ_2: PQQ-like domai 99.1 6.5E-08 1.4E-12 82.4 24.2 222 60-305 2-237 (238)
294 PRK04043 tolB translocation pr 99.1 1.1E-07 2.4E-12 87.0 26.7 225 61-315 169-416 (419)
295 KOG0309 Conserved WD40 repeat- 99.1 1.2E-09 2.7E-14 99.7 13.1 226 78-322 22-257 (1081)
296 KOG3914 WD repeat protein WDR4 99.1 9.2E-10 2E-14 93.6 10.5 155 46-216 70-232 (390)
297 COG5170 CDC55 Serine/threonine 99.1 2.9E-09 6.2E-14 87.6 12.9 210 121-344 25-313 (460)
298 KOG2695 WD40 repeat protein [G 99.1 6.5E-10 1.4E-14 92.6 8.7 156 54-220 228-389 (425)
299 PRK04043 tolB translocation pr 99.1 2.4E-07 5.1E-12 84.8 26.1 214 12-250 168-402 (419)
300 PF15492 Nbas_N: Neuroblastoma 99.1 1.3E-07 2.8E-12 77.6 21.5 239 46-311 5-272 (282)
301 KOG0882 Cyclophilin-related pe 99.1 3E-09 6.4E-14 91.8 12.4 221 121-359 8-250 (558)
302 KOG0882 Cyclophilin-related pe 99.0 3.3E-09 7.1E-14 91.6 11.8 255 78-344 7-309 (558)
303 PF07433 DUF1513: Protein of u 99.0 1E-06 2.3E-11 74.6 26.3 231 81-330 5-276 (305)
304 PF13360 PQQ_2: PQQ-like domai 99.0 6.9E-08 1.5E-12 82.2 19.7 228 12-251 2-233 (238)
305 KOG2695 WD40 repeat protein [G 99.0 2E-09 4.4E-14 89.8 8.5 151 138-309 228-387 (425)
306 KOG2114 Vacuolar assembly/sort 99.0 2.8E-07 6E-12 86.3 22.7 221 87-327 30-270 (933)
307 PF08450 SGL: SMP-30/Gluconola 99.0 2E-06 4.4E-11 73.4 26.7 211 46-286 7-244 (246)
308 PRK11138 outer membrane biogen 99.0 5.4E-07 1.2E-11 82.7 24.2 254 4-297 122-393 (394)
309 cd00216 PQQ_DH Dehydrogenases 98.9 5E-06 1.1E-10 78.3 28.4 287 4-308 63-434 (488)
310 KOG3617 WD40 and TPR repeat-co 98.9 8.3E-08 1.8E-12 89.5 15.7 106 46-152 23-131 (1416)
311 KOG1275 PAB-dependent poly(A) 98.9 7.2E-08 1.6E-12 90.6 14.9 184 91-296 146-340 (1118)
312 KOG1920 IkappaB kinase complex 98.9 1.4E-06 3E-11 84.9 23.5 234 37-297 69-364 (1265)
313 PF00400 WD40: WD domain, G-be 98.8 5.8E-09 1.3E-13 60.5 4.7 39 300-338 1-39 (39)
314 PF07433 DUF1513: Protein of u 98.8 9E-06 1.9E-10 69.1 25.2 228 46-289 12-277 (305)
315 KOG1832 HIV-1 Vpr-binding prot 98.8 2.8E-09 6.2E-14 99.4 4.7 210 79-326 1100-1317(1516)
316 KOG1645 RING-finger-containing 98.8 3.8E-07 8.2E-12 78.1 16.5 243 76-340 189-461 (463)
317 PF00930 DPPIV_N: Dipeptidyl p 98.8 7.5E-06 1.6E-10 73.9 26.0 259 61-328 23-345 (353)
318 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.3E-13 58.7 5.7 39 112-150 1-39 (39)
319 PRK02888 nitrous-oxide reducta 98.8 1.3E-05 2.9E-10 74.5 27.1 304 4-329 68-450 (635)
320 KOG2066 Vacuolar assembly/sort 98.8 7.4E-08 1.6E-12 89.4 12.5 184 122-340 39-233 (846)
321 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.8E-05 3.9E-10 64.3 24.1 305 3-342 24-353 (354)
322 KOG2066 Vacuolar assembly/sort 98.7 1.8E-06 3.8E-11 80.6 18.7 175 49-249 48-234 (846)
323 KOG1920 IkappaB kinase complex 98.7 9.2E-06 2E-10 79.4 22.4 210 81-300 69-324 (1265)
324 KOG1275 PAB-dependent poly(A) 98.7 1.3E-06 2.8E-11 82.5 16.2 188 134-348 147-350 (1118)
325 KOG1832 HIV-1 Vpr-binding prot 98.6 1.6E-08 3.5E-13 94.6 3.3 201 113-345 1092-1296(1516)
326 KOG1008 Uncharacterized conser 98.6 3.2E-08 6.9E-13 89.5 5.1 265 37-321 57-354 (783)
327 PF06433 Me-amine-dh_H: Methyl 98.6 0.00016 3.4E-09 62.5 26.7 269 12-308 16-330 (342)
328 KOG2114 Vacuolar assembly/sort 98.6 1.3E-05 2.9E-10 75.5 20.4 198 38-250 27-245 (933)
329 PRK02888 nitrous-oxide reducta 98.6 1.9E-05 4.2E-10 73.5 21.3 189 46-238 200-451 (635)
330 KOG3621 WD40 repeat-containing 98.6 1.7E-05 3.6E-10 73.3 20.5 143 2-153 45-198 (726)
331 PF11768 DUF3312: Protein of u 98.5 0.00021 4.5E-09 65.2 26.2 117 217-342 204-331 (545)
332 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00029 6.2E-09 57.5 25.0 105 48-153 20-124 (354)
333 PF06433 Me-amine-dh_H: Methyl 98.5 0.00038 8.2E-09 60.2 26.2 270 61-349 17-329 (342)
334 KOG1008 Uncharacterized conser 98.5 4.7E-08 1E-12 88.4 2.4 201 80-298 56-275 (783)
335 cd00216 PQQ_DH Dehydrogenases 98.5 0.00011 2.4E-09 69.3 24.8 278 52-345 63-429 (488)
336 PF06977 SdiA-regulated: SdiA- 98.5 5E-05 1.1E-09 63.7 19.6 206 80-328 21-239 (248)
337 PF08596 Lgl_C: Lethal giant l 98.5 6.5E-05 1.4E-09 67.9 21.0 215 124-344 3-294 (395)
338 PF11768 DUF3312: Protein of u 98.4 1E-05 2.2E-10 73.5 15.1 88 64-153 239-330 (545)
339 KOG3617 WD40 and TPR repeat-co 98.4 7.9E-06 1.7E-10 76.8 14.5 109 84-207 19-131 (1416)
340 KOG1645 RING-finger-containing 98.4 1.2E-05 2.6E-10 69.2 14.4 224 104-348 175-427 (463)
341 PF00780 CNH: CNH domain; Int 98.4 0.00038 8.1E-09 60.7 24.3 243 90-346 5-261 (275)
342 PF06977 SdiA-regulated: SdiA- 98.4 0.00017 3.7E-09 60.5 20.8 203 37-245 22-247 (248)
343 PF04053 Coatomer_WDAD: Coatom 98.4 0.00017 3.7E-09 66.1 22.3 229 80-341 32-263 (443)
344 PF04841 Vps16_N: Vps16, N-ter 98.4 0.0012 2.6E-08 60.7 27.1 180 62-250 62-248 (410)
345 PF08596 Lgl_C: Lethal giant l 98.3 0.00062 1.3E-08 61.7 24.4 236 82-330 3-326 (395)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0035 7.5E-08 59.6 31.6 112 4-118 71-197 (527)
347 PF00780 CNH: CNH domain; Int 98.3 0.0016 3.4E-08 56.7 24.6 233 47-309 4-266 (275)
348 KOG3621 WD40 repeat-containing 98.3 0.00023 4.9E-09 66.1 19.5 107 46-153 41-155 (726)
349 PF03178 CPSF_A: CPSF A subuni 98.2 0.00065 1.4E-08 60.6 22.3 216 13-245 2-262 (321)
350 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00077 1.7E-08 60.9 22.5 249 12-286 22-345 (353)
351 PF08553 VID27: VID27 cytoplas 98.2 0.0002 4.4E-09 69.4 18.8 139 3-151 495-646 (794)
352 PF04053 Coatomer_WDAD: Coatom 98.2 0.00035 7.5E-09 64.2 19.4 215 39-298 35-262 (443)
353 PF03178 CPSF_A: CPSF A subuni 98.2 0.00083 1.8E-08 59.9 21.6 220 102-337 2-262 (321)
354 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0029 6.2E-08 58.1 25.3 197 103-323 62-272 (410)
355 PF14583 Pectate_lyase22: Olig 98.2 0.0044 9.4E-08 54.9 24.6 296 18-338 15-379 (386)
356 COG0823 TolB Periplasmic compo 98.1 0.00027 5.9E-09 64.6 17.8 178 46-238 200-389 (425)
357 COG3391 Uncharacterized conser 98.1 0.0067 1.5E-07 55.3 30.0 278 15-322 13-310 (381)
358 COG3391 Uncharacterized conser 98.1 0.0038 8.2E-08 56.9 24.7 196 46-250 81-285 (381)
359 COG3386 Gluconolactonase [Carb 98.1 0.0034 7.4E-08 54.8 22.4 209 11-237 45-274 (307)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.01 2.2E-07 56.5 26.6 289 51-346 70-496 (527)
361 COG0823 TolB Periplasmic compo 98.0 0.0006 1.3E-08 62.4 17.0 201 103-329 174-388 (425)
362 KOG2395 Protein involved in va 98.0 0.00027 5.8E-09 63.5 14.0 141 190-339 347-499 (644)
363 PF08553 VID27: VID27 cytoplas 98.0 0.00017 3.6E-09 69.9 13.6 139 195-339 500-646 (794)
364 PF02897 Peptidase_S9_N: Proly 98.0 0.016 3.5E-07 53.8 27.0 237 46-303 131-409 (414)
365 COG3386 Gluconolactonase [Carb 97.9 0.011 2.4E-07 51.6 22.8 224 87-328 31-273 (307)
366 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0022 4.8E-08 45.6 14.7 100 178-293 2-109 (111)
367 KOG4441 Proteins containing BT 97.9 0.0047 1E-07 59.2 21.7 230 89-342 282-548 (571)
368 COG3490 Uncharacterized protei 97.9 0.0058 1.3E-07 51.0 18.9 252 70-339 57-347 (366)
369 PHA02713 hypothetical protein; 97.9 0.0018 3.9E-08 62.1 18.5 217 62-303 273-538 (557)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.0069 1.5E-07 54.9 20.8 84 261-344 299-402 (415)
371 KOG4640 Anaphase-promoting com 97.8 0.0001 2.3E-09 67.4 9.1 75 79-154 19-94 (665)
372 KOG2444 WD40 repeat protein [G 97.8 5E-05 1.1E-09 60.7 6.1 147 190-347 31-184 (238)
373 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0025 5.4E-08 45.4 13.5 100 125-243 2-109 (111)
374 smart00320 WD40 WD40 repeats. 97.8 6.5E-05 1.4E-09 42.5 4.7 39 300-338 2-40 (40)
375 PHA02713 hypothetical protein; 97.7 0.012 2.5E-07 56.7 21.9 215 103-343 273-536 (557)
376 PF05096 Glu_cyclase_2: Glutam 97.7 0.02 4.4E-07 48.0 20.0 181 124-328 46-249 (264)
377 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.3E-09 41.6 5.1 38 113-150 3-40 (40)
378 PF02897 Peptidase_S9_N: Proly 97.7 0.042 9.1E-07 51.1 27.4 244 83-343 126-407 (414)
379 KOG1897 Damage-specific DNA bi 97.7 0.064 1.4E-06 52.6 28.0 311 4-343 550-901 (1096)
380 KOG4441 Proteins containing BT 97.6 0.0088 1.9E-07 57.4 19.2 226 49-300 284-548 (571)
381 KOG4640 Anaphase-promoting com 97.6 0.00036 7.8E-09 64.0 8.8 93 122-228 20-115 (665)
382 PRK13616 lipoprotein LpqB; Pro 97.6 0.011 2.4E-07 56.7 19.0 191 37-244 350-564 (591)
383 KOG2444 WD40 repeat protein [G 97.5 0.00013 2.8E-09 58.4 4.6 100 190-298 71-177 (238)
384 KOG4499 Ca2+-binding protein R 97.5 0.026 5.5E-07 45.8 16.6 220 46-288 22-275 (310)
385 KOG2079 Vacuolar assembly/sort 97.4 0.0007 1.5E-08 66.1 8.3 100 49-151 98-202 (1206)
386 KOG2079 Vacuolar assembly/sort 97.3 0.00095 2.1E-08 65.2 8.5 107 224-340 93-203 (1206)
387 KOG2395 Protein involved in va 97.3 0.0052 1.1E-07 55.6 12.2 144 90-248 343-500 (644)
388 PRK13616 lipoprotein LpqB; Pro 97.3 0.034 7.4E-07 53.5 18.4 188 123-335 350-563 (591)
389 PF14727 PHTB1_N: PTHB1 N-term 97.2 0.17 3.6E-06 46.3 23.9 273 3-299 38-361 (418)
390 COG3490 Uncharacterized protei 97.2 0.028 6.2E-07 47.0 14.2 222 15-249 93-349 (366)
391 COG3204 Uncharacterized protei 97.2 0.083 1.8E-06 44.7 16.8 168 80-250 85-265 (316)
392 PF10647 Gmad1: Lipoprotein Lp 97.1 0.14 3.1E-06 43.7 20.4 154 38-199 25-187 (253)
393 COG3204 Uncharacterized protei 97.1 0.14 3.1E-06 43.3 20.0 176 119-309 82-273 (316)
394 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0027 5.8E-08 37.7 5.5 35 79-114 10-44 (47)
395 KOG3630 Nuclear pore complex, 97.1 0.0092 2E-07 59.0 12.0 155 124-286 102-261 (1405)
396 KOG4499 Ca2+-binding protein R 97.0 0.13 2.8E-06 41.9 18.3 139 175-321 108-264 (310)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.17 3.6E-06 46.2 19.0 82 219-309 308-409 (415)
398 PF14583 Pectate_lyase22: Olig 97.0 0.25 5.4E-06 44.1 22.3 226 87-331 42-303 (386)
399 PHA02790 Kelch-like protein; P 96.9 0.19 4E-06 47.7 18.9 183 91-300 271-472 (480)
400 PHA03098 kelch-like protein; P 96.8 0.14 3E-06 49.4 18.3 187 90-300 293-513 (534)
401 KOG1897 Damage-specific DNA bi 96.8 0.63 1.4E-05 46.2 26.0 301 14-341 471-816 (1096)
402 PRK10115 protease 2; Provision 96.8 0.64 1.4E-05 46.1 27.0 240 82-342 128-396 (686)
403 PF07995 GSDH: Glucose / Sorbo 96.8 0.38 8.2E-06 43.0 27.2 245 82-335 3-330 (331)
404 PF05096 Glu_cyclase_2: Glutam 96.7 0.28 6.2E-06 41.4 19.6 180 46-238 52-250 (264)
405 KOG2377 Uncharacterized conser 96.7 0.34 7.4E-06 43.6 17.9 151 46-209 29-187 (657)
406 COG5276 Uncharacterized conser 96.7 0.3 6.4E-06 41.4 25.8 265 50-340 96-369 (370)
407 TIGR03074 PQQ_membr_DH membran 96.7 0.41 8.9E-06 47.7 20.1 240 92-349 194-486 (764)
408 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0096 2.1E-07 35.3 5.5 34 216-249 9-42 (47)
409 PHA03098 kelch-like protein; P 96.6 0.24 5.2E-06 47.8 18.1 133 14-153 312-465 (534)
410 PF05694 SBP56: 56kDa selenium 96.5 0.56 1.2E-05 42.5 17.6 226 4-237 90-392 (461)
411 PF12234 Rav1p_C: RAVE protein 96.4 0.16 3.5E-06 48.7 14.8 108 190-298 42-156 (631)
412 TIGR03118 PEPCTERM_chp_1 conse 96.3 0.6 1.3E-05 40.0 24.8 223 82-320 24-307 (336)
413 PF12234 Rav1p_C: RAVE protein 96.2 0.29 6.2E-06 47.0 15.5 119 82-206 31-155 (631)
414 KOG2280 Vacuolar assembly/sort 96.2 0.9 2E-05 43.8 18.3 177 61-251 64-249 (829)
415 PF08728 CRT10: CRT10; InterP 96.2 0.6 1.3E-05 45.4 17.5 156 134-297 49-245 (717)
416 PHA02790 Kelch-like protein; P 96.1 0.86 1.9E-05 43.2 18.2 131 190-331 320-456 (480)
417 PF15390 DUF4613: Domain of un 96.0 1.3 2.9E-05 41.5 18.8 157 80-250 19-188 (671)
418 PF05694 SBP56: 56kDa selenium 95.7 1.6 3.5E-05 39.7 20.3 193 48-251 85-345 (461)
419 KOG3630 Nuclear pore complex, 95.7 0.17 3.7E-06 50.7 11.7 142 176-327 101-260 (1405)
420 PF02333 Phytase: Phytase; In 95.6 1.6 3.6E-05 39.2 21.8 208 90-307 66-300 (381)
421 TIGR02604 Piru_Ver_Nterm putat 95.6 0.56 1.2E-05 42.7 14.4 148 81-237 14-202 (367)
422 PRK10115 protease 2; Provision 95.4 3.1 6.8E-05 41.4 31.5 111 39-152 129-255 (686)
423 COG5167 VID27 Protein involved 95.4 0.3 6.4E-06 44.7 11.4 143 190-340 481-632 (776)
424 PF14727 PHTB1_N: PTHB1 N-term 95.4 2.2 4.8E-05 39.2 29.1 267 49-343 36-363 (418)
425 PF14870 PSII_BNR: Photosynthe 95.3 1.9 4E-05 37.8 24.9 187 83-295 106-301 (302)
426 KOG2280 Vacuolar assembly/sort 95.3 3.1 6.7E-05 40.3 18.8 219 79-321 42-270 (829)
427 PF10647 Gmad1: Lipoprotein Lp 95.1 1.8 4E-05 37.0 22.0 150 124-289 25-186 (253)
428 PF14781 BBS2_N: Ciliary BBSom 95.1 0.95 2.1E-05 33.7 11.8 115 84-212 2-130 (136)
429 PRK14131 N-acetylneuraminic ac 95.1 2.6 5.6E-05 38.6 20.3 96 48-143 37-149 (376)
430 PRK13684 Ycf48-like protein; P 94.9 2.7 5.8E-05 37.7 18.2 151 122-296 172-329 (334)
431 TIGR03074 PQQ_membr_DH membran 94.8 4.9 0.00011 40.3 20.5 114 4-119 196-353 (764)
432 KOG2377 Uncharacterized conser 94.8 3 6.6E-05 37.9 15.6 125 197-327 41-170 (657)
433 PF08728 CRT10: CRT10; InterP 94.8 0.72 1.6E-05 44.9 12.9 103 48-151 112-245 (717)
434 PF10313 DUF2415: Uncharacteri 94.8 0.17 3.6E-06 29.1 5.3 32 81-112 1-35 (43)
435 PF14870 PSII_BNR: Photosynthe 94.8 2.6 5.7E-05 36.9 25.4 226 78-331 14-253 (302)
436 TIGR03547 muta_rot_YjhT mutatr 94.6 3.3 7.2E-05 37.4 20.0 95 49-143 17-128 (346)
437 COG5276 Uncharacterized conser 94.6 2.6 5.5E-05 36.1 23.6 261 2-297 96-368 (370)
438 COG5167 VID27 Protein involved 94.6 0.82 1.8E-05 42.0 11.9 140 3-152 481-632 (776)
439 KOG1916 Nuclear protein, conta 94.6 0.082 1.8E-06 51.4 6.0 137 13-152 153-323 (1283)
440 PF10168 Nup88: Nuclear pore c 94.5 5.7 0.00012 39.6 22.1 87 122-209 84-181 (717)
441 KOG1916 Nuclear protein, conta 94.4 0.089 1.9E-06 51.2 5.8 145 61-212 153-328 (1283)
442 PF10168 Nup88: Nuclear pore c 94.4 2.1 4.5E-05 42.5 15.3 81 219-300 85-181 (717)
443 KOG1983 Tomosyn and related SN 94.3 1.1 2.3E-05 46.4 13.6 73 267-344 196-268 (993)
444 PF15390 DUF4613: Domain of un 94.1 1.6 3.6E-05 41.0 12.9 150 123-299 20-187 (671)
445 PF10313 DUF2415: Uncharacteri 94.1 0.28 6E-06 28.2 5.2 31 270-300 1-35 (43)
446 KOG2247 WD40 repeat-containing 94.0 0.0082 1.8E-07 53.9 -1.5 148 180-340 39-188 (615)
447 TIGR01063 gyrA DNA gyrase, A s 93.7 8.9 0.00019 39.0 23.8 250 87-340 491-769 (800)
448 COG3823 Glutamine cyclotransfe 93.7 3.1 6.8E-05 33.6 15.4 177 133-328 55-247 (262)
449 TIGR03548 mutarot_permut cycli 93.7 4.9 0.00011 35.9 20.2 106 91-210 72-197 (323)
450 COG4590 ABC-type uncharacteriz 93.5 0.78 1.7E-05 41.5 9.5 164 79-252 219-390 (733)
451 TIGR03547 muta_rot_YjhT mutatr 93.5 5.7 0.00012 35.9 20.5 40 199-238 168-209 (346)
452 KOG1900 Nuclear pore complex, 93.4 7.2 0.00016 40.6 17.0 139 11-153 97-273 (1311)
453 COG3823 Glutamine cyclotransfe 93.4 3.3 7.2E-05 33.5 11.8 106 3-117 58-165 (262)
454 KOG2247 WD40 repeat-containing 93.3 0.013 2.8E-07 52.7 -1.6 151 121-294 33-184 (615)
455 PF07569 Hira: TUP1-like enhan 93.1 0.96 2.1E-05 37.6 9.2 65 183-250 18-97 (219)
456 PRK05560 DNA gyrase subunit A; 93.1 11 0.00024 38.3 23.2 249 89-340 495-772 (805)
457 TIGR02604 Piru_Ver_Nterm putat 93.0 6.4 0.00014 35.9 15.3 104 123-237 14-142 (367)
458 COG4590 ABC-type uncharacteriz 93.0 0.85 1.8E-05 41.2 8.9 243 90-344 125-390 (733)
459 PLN02193 nitrile-specifier pro 92.9 8.6 0.00019 36.5 19.1 104 190-301 280-413 (470)
460 PLN02153 epithiospecifier prot 92.7 7.4 0.00016 35.0 21.5 61 91-153 32-110 (341)
461 PF14781 BBS2_N: Ciliary BBSom 92.6 3.3 7.2E-05 30.9 12.8 101 190-302 11-129 (136)
462 PRK14131 N-acetylneuraminic ac 92.6 8.1 0.00018 35.4 20.7 95 3-101 41-149 (376)
463 COG4257 Vgb Streptogramin lyas 92.2 6.6 0.00014 33.4 20.5 243 79-342 60-307 (353)
464 PF07569 Hira: TUP1-like enhan 92.0 0.74 1.6E-05 38.3 7.2 65 46-112 18-97 (219)
465 PF14761 HPS3_N: Hermansky-Pud 91.8 6.2 0.00014 32.3 14.7 101 51-153 29-164 (215)
466 KOG1900 Nuclear pore complex, 91.5 2.9 6.3E-05 43.2 11.5 163 79-250 77-274 (1311)
467 PLN02153 epithiospecifier prot 91.4 11 0.00023 34.1 22.1 95 14-113 51-170 (341)
468 PF08801 Nucleoporin_N: Nup133 91.3 13 0.00027 34.8 16.0 31 270-300 190-221 (422)
469 smart00036 CNH Domain found in 91.2 10 0.00022 33.5 24.8 243 91-347 12-277 (302)
470 COG1520 FOG: WD40-like repeat 91.0 12 0.00027 34.1 22.1 200 91-309 68-279 (370)
471 TIGR03548 mutarot_permut cycli 90.8 12 0.00025 33.5 21.9 62 190-251 125-197 (323)
472 TIGR03118 PEPCTERM_chp_1 conse 90.7 10 0.00022 32.9 18.5 218 123-346 23-285 (336)
473 KOG3616 Selective LIM binding 90.4 13 0.00029 36.3 14.2 70 79-151 13-82 (1636)
474 PF12768 Rax2: Cortical protei 90.2 6.9 0.00015 33.9 11.5 102 102-212 16-128 (281)
475 PF14761 HPS3_N: Hermansky-Pud 90.2 9.2 0.0002 31.3 17.2 173 93-297 29-213 (215)
476 PF07995 GSDH: Glucose / Sorbo 89.8 14 0.00031 33.1 23.6 241 40-293 5-330 (331)
477 smart00036 CNH Domain found in 89.5 14 0.00031 32.6 26.5 238 49-308 12-280 (302)
478 PRK13684 Ycf48-like protein; P 89.3 16 0.00034 32.8 27.6 151 175-339 172-330 (334)
479 PLN00033 photosystem II stabil 89.2 18 0.00039 33.3 29.5 148 180-337 243-396 (398)
480 KOG1983 Tomosyn and related SN 89.2 22 0.00049 37.1 16.0 56 193-252 213-268 (993)
481 PF02333 Phytase: Phytase; In 89.0 17 0.00038 32.9 20.1 193 4-208 70-291 (381)
482 KOG4460 Nuclear pore complex, 89.0 14 0.0003 34.6 12.6 72 82-153 105-199 (741)
483 PF11635 Med16: Mediator compl 88.8 29 0.00063 35.2 19.3 199 95-293 65-345 (753)
484 TIGR02276 beta_rpt_yvtn 40-res 88.8 1.1 2.3E-05 25.6 4.0 41 48-88 1-41 (42)
485 PF12768 Rax2: Cortical protei 88.3 15 0.00033 31.9 12.2 115 199-320 16-146 (281)
486 PF10433 MMS1_N: Mono-function 88.2 25 0.00055 33.7 21.8 242 86-338 49-340 (504)
487 PF10395 Utp8: Utp8 family; I 88.0 28 0.00061 34.1 19.4 162 79-251 128-308 (670)
488 TIGR01063 gyrA DNA gyrase, A s 87.1 38 0.00083 34.6 25.5 245 46-298 492-769 (800)
489 TIGR03606 non_repeat_PQQ dehyd 86.9 27 0.00059 32.7 13.8 115 121-239 28-166 (454)
490 PRK13613 lipoprotein LpqB; Pro 86.9 33 0.00071 33.6 19.6 196 38-243 364-577 (599)
491 PF11715 Nup160: Nucleoporin N 86.6 3.6 7.8E-05 39.9 8.5 80 228-307 156-257 (547)
492 PF11635 Med16: Mediator compl 86.5 40 0.00087 34.3 17.7 67 269-335 259-345 (753)
493 COG5290 IkappaB kinase complex 86.4 29 0.00062 34.5 13.5 31 121-151 111-141 (1243)
494 TIGR02276 beta_rpt_yvtn 40-res 86.1 4.2 9.2E-05 23.0 5.5 36 191-226 6-41 (42)
495 PF11715 Nup160: Nucleoporin N 86.0 2.8 6E-05 40.7 7.4 83 132-216 156-257 (547)
496 PF13449 Phytase-like: Esteras 86.0 19 0.00042 32.2 12.2 113 219-332 20-168 (326)
497 COG5308 NUP170 Nuclear pore co 86.0 11 0.00023 37.8 10.7 138 11-152 100-275 (1263)
498 KOG3522 Predicted guanine nucl 85.9 12 0.00026 37.0 11.0 137 5-153 550-698 (925)
499 PLN02193 nitrile-specifier pro 85.6 33 0.00072 32.6 24.0 188 49-251 175-413 (470)
500 KOG3616 Selective LIM binding 85.4 20 0.00043 35.2 12.0 71 39-115 17-87 (1636)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-53 Score=349.99 Aligned_cols=307 Identities=21% Similarity=0.356 Sum_probs=277.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAE 81 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~ 81 (424)
.||||+ .|.++|+||+.+..+..+.++| .+.|.|++ |+|||+.+|+++.+ |+|++||..+++... ...|..
T Consensus 129 ~l~tGs-GD~TvR~WD~~TeTp~~t~KgH---~~WVlcva--wsPDgk~iASG~~d-g~I~lwdpktg~~~g~~l~gH~K 201 (480)
T KOG0271|consen 129 RLVTGS-GDTTVRLWDLDTETPLFTCKGH---KNWVLCVA--WSPDGKKIASGSKD-GSIRLWDPKTGQQIGRALRGHKK 201 (480)
T ss_pred eEEecC-CCceEEeeccCCCCcceeecCC---ccEEEEEE--ECCCcchhhccccC-CeEEEecCCCCCcccccccCccc
Confidence 689999 9999999999999999888765 47899999 99999999999998 999999998887664 456899
Q ss_pred CeeEEEECC-----CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475 82 PIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 82 ~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 156 (424)
.|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+|+|+.|-.+| ++.+|+.|++|++|+..
T Consensus 202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~---- 276 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL---- 276 (480)
T ss_pred ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEcc----
Confidence 999999976 57799999999999999999999999999999999999998544 89999999999999984
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEc-----------C-----------------------ceeEEEEEeCCCcEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYG-----------G-----------------------VSATIVSASEDRTCK 202 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~-----------------------~~~~l~~~~~d~~v~ 202 (424)
...+...+++|...|+.++.+.+ + .+..|++|+.|.++.
T Consensus 277 -------dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf 349 (480)
T KOG0271|consen 277 -------DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF 349 (480)
T ss_pred -------chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence 35567788999999999988621 1 124699999999999
Q ss_pred EEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475 203 VWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (424)
Q Consensus 203 iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 279 (424)
+|+.... +++..+. |..-|+.+.|+||++++++++.|..|++||-+++ +.+..+++|-.+|..++|+.
T Consensus 350 lW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEeccC
Confidence 9997644 3555555 8899999999999999999999999999999998 67889999999999999999
Q ss_pred CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
.++|++|+.|.++++||+++.+....+.+|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 89999999999999999999999999999999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-52 Score=340.51 Aligned_cols=292 Identities=24% Similarity=0.337 Sum_probs=264.9
Q ss_pred CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~ 110 (424)
..+|...|.|+. |+|+|+.|++++.| .++++||..+..+.. ...|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus 111 ~~GH~e~Vl~~~--fsp~g~~l~tGsGD-~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 111 IAGHGEAVLSVQ--FSPTGSRLVTGSGD-TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cCCCCCcEEEEE--ecCCCceEEecCCC-ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 346778899999 99999999999998 999999999887664 46799999999999999999999999999999999
Q ss_pred Cccee-eeeccccCCeEEEEEcc-----CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 111 SGRLL-KKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 111 ~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+|+++ ..+.+|...|++++|.| ..++|++++.||.++|||+ ....++..+.+|..+|+|+.|.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~-----------~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT-----------KLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc-----------cCceEEEEeccCccceEEEEEc
Confidence 99765 67899999999999976 5678999999999999999 4466788899999999999997
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEEC-----------CCCC---------------------
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD-----------PAEH--------------------- 231 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~-----------~~~~--------------------- 231 (424)
-. .++++|+.|++|++|+...|.+.+.+. |...|+.++.+ |.++
T Consensus 257 G~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 257 GE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred CC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 55 599999999999999999999999888 88888888776 3233
Q ss_pred ----EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475 232 ----VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 232 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~ 306 (424)
.+++|++|.++.+|+-.... +++..+.+|...|+.+.|+| ++++|+++.|.+|++||.++|+.+.+|
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~k--------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSK--------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred cCcceeEEecCCceEEEecccccc--------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 49999999999999987765 67888999999999999999 999999999999999999999999999
Q ss_pred eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
++|-++|..++|+.|.++|++||.|.++++|++++.++...+
T Consensus 406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 999999999999999999999999999999999988775544
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-49 Score=330.42 Aligned_cols=279 Identities=21% Similarity=0.296 Sum_probs=260.6
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEEccC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~ 111 (424)
..+++..+. |+++++.+++++.+ |.++||+..+.... ....|.+.|.++.|+|. +..+|+|+.||++++|++.+
T Consensus 174 d~rPis~~~--fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 174 DTRPISGCS--FSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred CCCcceeeE--eecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 445677777 99999999999998 99999999877554 44679999999999996 67899999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
..++..+.+|...|..++|+|+|++|+|++.|.+-++||+++. ..+....+|...|.+++|.++| ..
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-----------~ElL~QEGHs~~v~~iaf~~DG--SL 317 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-----------SELLLQEGHSKGVFSIAFQPDG--SL 317 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-----------hhhHhhcccccccceeEecCCC--ce
Confidence 9999999999999999999999999999999999999999763 3345568999999999999999 89
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++|+.|..-+|||+++++++..+. |..+|..+.|+|+|..+++|+.|++++|||++.. ..+..+.+|..
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~n 388 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHSN 388 (459)
T ss_pred eeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceecccccc
Confidence 9999999999999999999999988 8999999999999999999999999999999997 45888999999
Q ss_pred CeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 271 AVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 271 ~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
-|+.+.|+| |.+|+|++.|++++||...++.+++++.+|.+.|.++..++|++++++++.|.++++|.
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998 99999999999999999999999999999999999999999999999999999999996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.3e-44 Score=285.09 Aligned_cols=280 Identities=21% Similarity=0.371 Sum_probs=252.4
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
.+|...|.++. |++|++++++++.| |.+.|||.-+.. ......+...|..++|+|.|+++|+|+-|+...||++.+
T Consensus 52 kGH~~Ki~~~~--ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 52 KGHLNKIYAMD--WSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred cccccceeeeE--ecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 35668899999 99999999999998 999999986554 445566788999999999999999999999999999985
Q ss_pred c------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475 112 G------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (424)
Q Consensus 112 ~------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 185 (424)
. ...+.+.+|.+.+.|+.|.+ ..+|+|++.|.+..+||+++ .+.+..+.+|.+.|.++.++|
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~-----------g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET-----------GQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc-----------ceEEEEecCCcccEEEEecCC
Confidence 5 34567899999999999987 55799999999999999965 556788999999999999999
Q ss_pred -cCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 186 -GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 186 -~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
++ +.+++|+.|+..++||++.+.+.+.|. |...|++++|.|+|.-+++|+.|++.++||++... .+.
T Consensus 197 ~~~--ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---------~~a 265 (343)
T KOG0286|consen 197 SDG--NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---------ELA 265 (343)
T ss_pred CCC--CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---------EEe
Confidence 55 999999999999999999999999998 99999999999999999999999999999999963 333
Q ss_pred eec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 264 SLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 264 ~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
.+. ....+|++++|+. |++|.+|..|.++.+||.-.++.+..+.+|.+.|+++..+|||.-+++||.|..++||.
T Consensus 266 ~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 266 VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 332 3456899999999 99999999999999999999999999999999999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-45 Score=305.95 Aligned_cols=265 Identities=20% Similarity=0.319 Sum_probs=244.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC--CCccccCCCCceeEEEEECCCCcee-eeecC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVE-VKSLP 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~ 79 (424)
..||||+ -+|.++||+..+...+.++.+|... +.++. |+|. +..+|+++.| |++++|++++.... ....|
T Consensus 188 ~~laT~s-wsG~~kvW~~~~~~~~~~l~gH~~~---v~~~~--fhP~~~~~~lat~s~D-gtvklw~~~~e~~l~~l~gH 260 (459)
T KOG0272|consen 188 KHLATGS-WSGLVKVWSVPQCNLLQTLRGHTSR---VGAAV--FHPVDSDLNLATASAD-GTVKLWKLSQETPLQDLEGH 260 (459)
T ss_pred CeEEEee-cCCceeEeecCCcceeEEEeccccc---eeeEE--EccCCCccceeeeccC-CceeeeccCCCcchhhhhcc
Confidence 4689999 9999999999999999999887654 55555 9997 5689999998 99999999986554 44678
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.|||.++++|+.|..-+|||+++
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt------ 334 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT------ 334 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC-CCCEEEEEe
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGS 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~ 237 (424)
...+-.+.+|..+|.++.|+|+| ..++||+.|++++|||++..+.+..+. |..-|+.+.|+| .|.+|++++
T Consensus 335 -----gr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 335 -----GRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred -----CcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 44577789999999999999999 999999999999999999999988887 899999999999 789999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
.|+++++|..++. .+++.+.+|.+.|.++..++ +.+++|++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCc---------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999985 78899999999999999999 99999999999999996
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=270.89 Aligned_cols=279 Identities=15% Similarity=0.255 Sum_probs=244.9
Q ss_pred CccccCCCCceeEEEEECCCCceeeeecC-CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEE
Q 014475 51 QLREQPSASSGSILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTC 127 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~ 127 (424)
-+|++++.| .+|++|...++.+.....| ...|+.+...|+++.||+++. ..|++||++++. ++.++.+|.+.|..
T Consensus 11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCc-ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 467888887 9999999999998877666 678999999999999999876 579999999875 58899999999999
Q ss_pred EEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475 128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (424)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~ 207 (424)
+.|..+|+++.+|++||+++|||++.. .......|..+|+++..+|+. ..|++|..+|.|++||+.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~------------~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSL------------SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCc------------ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence 999999999999999999999999652 223344578999999999998 899999999999999999
Q ss_pred CCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEE
Q 014475 208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI 284 (424)
Q Consensus 208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~ 284 (424)
+..+...+. ....|.++.+.|+|.+++.+...|..++|++-.... .....++..++.|.+.+..+.++| +++|+
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhhheecccceEEEEEECCCCcEEE
Confidence 876666554 457899999999999999999999999999977432 223467788999999999999999 99999
Q ss_pred EeCCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 285 SGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 285 t~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
+++.|.+++||+.++. +.-..+.+|+..++.++||.||+||++|+.|+.+++|++..++.....
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 9999999999999987 666788899999999999999999999999999999999988654433
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-42 Score=266.93 Aligned_cols=288 Identities=17% Similarity=0.285 Sum_probs=248.6
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLP 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~ 79 (424)
.+||+++ -|-+||+|...+|.+.++++-..++ |..+. ..|+++.||+++. ..|++||+.+.... ....|
T Consensus 11 viLvsA~-YDhTIRfWqa~tG~C~rTiqh~dsq---VNrLe--iTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAG-YDHTIRFWQALTGICSRTIQHPDSQ---VNRLE--ITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEecc-CcceeeeeehhcCeEEEEEecCccc---eeeEE--EcCCcchhhhccC--CeeEEEEccCCCCCceeEEecc
Confidence 7899999 9999999999999999999865555 55555 9999999999998 69999999876642 33458
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|+++.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+....
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~-- 159 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT-- 159 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc--
Confidence 8999999999999999999999999999999977777666 7799999999999999999999999999999652211
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc------eeeeee-cCcceeEEEECCCCCE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------LLRNIV-FPSVIDAIALDPAEHV 232 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~~ 232 (424)
.........+|.++.+.|++ ..++.+...|.+.+|++-+.. ++.+++ |.+.+..+.++|++++
T Consensus 160 --------~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 160 --------HELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred --------cccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 11123344689999999999 899999999999999987643 344444 7889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (424)
|++++.|.+++||+.++.. +....+.+|...+..++|+. +.||+||+.|+.+++||+..++.++...+|..
T Consensus 230 lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred EEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 9999999999999999852 55677889999999999999 99999999999999999999999999999988
Q ss_pred CeeEEEEE
Q 014475 312 PVNNILVV 319 (424)
Q Consensus 312 ~v~~l~~s 319 (424)
+..+++..
T Consensus 302 ~~vc~~ln 309 (311)
T KOG0315|consen 302 AAVCVALN 309 (311)
T ss_pred ccEEEEee
Confidence 87777654
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-42 Score=270.77 Aligned_cols=282 Identities=18% Similarity=0.325 Sum_probs=238.9
Q ss_pred CCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCce------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475 34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 106 (424)
+|.+.|..++ ..+.+ +.+++++.| .++.+|++..... .....|...|..+..++||++.++++.|+++++
T Consensus 13 gh~d~Vt~la--~~~~~~~~l~sasrD-k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 13 GHTDWVTALA--IKIKNSDILVSASRD-KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred CCCceEEEEE--eecCCCceEEEcccc-eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 4556777777 66664 455556665 9999999875432 233568999999999999999999999999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEE
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIG 184 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 184 (424)
||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+... .+..+.. .+...|.|+.|+
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g------------~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG------------VCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc------------cEEEEEecCCCcCcEEEEEEc
Confidence 99999999999999999999999999999999999999999999843 1222222 237899999999
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
|+....++++++.|++|++||+++.+....+. |.+.++.++++|||...++|+.||.+.+||++.++ .+.
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k---------~ly 228 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK---------NLY 228 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc---------eeE
Confidence 99756899999999999999999998887777 88999999999999999999999999999999974 333
Q ss_pred eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc---------CCCeeEEEEEecCceeeeccCCCce
Q 014475 264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA---------KGPVNNILVVRRPLYLNLGSFSNPH 334 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~~~d~~i 334 (424)
. .+|...|.+++|+|.++.+++..+..|+|||+.++.++..++.. .-...+++|++||+.|.+|-.|+.|
T Consensus 229 s-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 229 S-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred e-ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 3 36889999999999777777777888999999999988876532 1235678999999999999999999
Q ss_pred eeccCC
Q 014475 335 TSSRRH 340 (424)
Q Consensus 335 ~iw~~~ 340 (424)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999864
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.4e-44 Score=295.25 Aligned_cols=278 Identities=21% Similarity=0.316 Sum_probs=247.1
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
..|..+. |.|+|+.|++++.. |.+.+|+...-... +...|..+|+++.|++++.++++|+.+|.|++|+..-.. +
T Consensus 97 c~V~~v~--WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V 172 (464)
T KOG0284|consen 97 CPVNVVR--WTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V 172 (464)
T ss_pred cceeeEE--EcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h
Confidence 3456666 99999999999998 99999998654433 456799999999999999999999999999999976544 4
Q ss_pred eeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475 116 KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 116 ~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 194 (424)
+.++. |...|++++|+|++..|++++.||+|+|||... ......+.+|.-.|.++.|+|.. ..+++
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----------~kee~vL~GHgwdVksvdWHP~k--gLias 239 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----------PKEERVLRGHGWDVKSVDWHPTK--GLIAS 239 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----------CchhheeccCCCCcceeccCCcc--ceeEE
Confidence 44444 459999999999999999999999999999955 33345568999999999999998 89999
Q ss_pred EeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (424)
++.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..++++|+++. +.+..+++|...++
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVT 310 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhhe
Confidence 9999999999999999999887 8999999999999999999999999999999964 66888999999999
Q ss_pred EEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 274 CLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 274 ~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++.|+| ..+|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|..|++|+.|.++++|...
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999 8899999999999999998666666554 689999999999999999999999999999765
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-41 Score=286.17 Aligned_cols=309 Identities=21% Similarity=0.372 Sum_probs=274.2
Q ss_pred EEeecCCCCCceEEEeCCC--C--ceEEEeeCC-------CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc
Q 014475 4 LIASSSVADTGIGCWDLES--G--AEQLRYKSC-------ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ 72 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~--~--~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~ 72 (424)
+||+++ .|.+.++|++.. . .....++.+ ......|++++ |+.+|..||++..+ |.+++|+.....
T Consensus 193 llasg~-~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~--Wn~~G~~LatG~~~-G~~riw~~~G~l 268 (524)
T KOG0273|consen 193 LLASGS-GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD--WNNDGTLLATGSED-GEARIWNKDGNL 268 (524)
T ss_pred hhhccC-CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE--ecCCCCeEEEeecC-cEEEEEecCchh
Confidence 688899 999999999874 1 111112111 11236799999 99999999999998 999999999888
Q ss_pred eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
......|.+||.++.|+..|+||++++.|+++.+||..+++..+.+.-|..+-..+.|-.+ ..|++++.||.|+++.+
T Consensus 269 ~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv- 346 (524)
T KOG0273|consen 269 ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKV- 346 (524)
T ss_pred hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEe-
Confidence 8888889999999999999999999999999999999999999999989888888999854 46899999999999999
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC-
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE- 230 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~- 230 (424)
....++.++.+|.++|.++.|+|.+ .+|++++.|++++||..........+. |...|..+.|+|.|
T Consensus 347 ----------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 347 ----------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred ----------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 4566788999999999999999999 999999999999999998888888777 88899999999864
Q ss_pred --------CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 231 --------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 231 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
..+++++.|+++++||+..+ .++..+..|..+|.+++|+| ++++|+|+.||.|.+|+.++++
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 46899999999999999997 67888999999999999999 9999999999999999999999
Q ss_pred EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
.++...+ .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 486 l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 LVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999985 5679999999999999999999999987764
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-41 Score=301.55 Aligned_cols=325 Identities=22% Similarity=0.332 Sum_probs=262.8
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--cccCCCCceeEEEEECCCCce--eeeec
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASSGSILYWSWSKPQV--EVKSL 78 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~~~g~i~vwd~~~~~~--~~~~~ 78 (424)
.+||+|+ .||.++|||+..+.+...|++|. +.|.++. |+|+-.+ |++++.| +.+++||+..... .....
T Consensus 118 ~LlAtgg-aD~~v~VWdi~~~~~th~fkG~g---GvVssl~--F~~~~~~~lL~sg~~D-~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 118 TLLATGG-ADGRVKVWDIKNGYCTHSFKGHG---GVVSSLL--FHPHWNRWLLASGATD-GTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred ceEEecc-ccceEEEEEeeCCEEEEEecCCC---ceEEEEE--eCCccchhheeecCCC-ceEEEEEcccCchHHHHHHh
Confidence 4799999 99999999999999999998765 5577777 8887654 4555555 9999999986544 23456
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-----------------------------------------
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----------------------------------------- 117 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----------------------------------------- 117 (424)
|...|++++|++|+..+++++.|..+.+||+.+.+....
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 888999999999888788778877777777632110000
Q ss_pred --------------------------------------------------------------------------------
Q 014475 118 -------------------------------------------------------------------------------- 117 (424)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (424)
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence
Q ss_pred ----------eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475 118 ----------WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 118 ----------~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (424)
+.+|...|.++....+|-+|++|+.|.++++|.+++.. .+..++....+|...|.+++++..+
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~-------~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC-------SKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCc-------chhhhhhhhcccccccceeeecccC
Confidence 01455556666644455677788888888888773311 2334556678999999999997766
Q ss_pred ceeEEEEEeCCCcEEEEecCCCce---eeee-------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRL---LRNI-------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
. .+|+++|.|.++++|++...+. ...+ .|+..|++++++|+.+++++|+.|.+.++|+++..
T Consensus 424 a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------- 495 (775)
T KOG0319|consen 424 A-SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------- 495 (775)
T ss_pred c-cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------
Confidence 5 8999999999999999976221 1111 27889999999999999999999999999999954
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i 336 (424)
.....+.+|...|.++.|+| ++.++|+|.|++|+||.+.+..++++|.+|...|..+.|-.++..|++++.||.+++
T Consensus 496 --~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 496 --RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred --eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 78899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccc
Q 014475 337 SRRHGSQLPPPLDKY 351 (424)
Q Consensus 337 w~~~~~~~~~~~~~~ 351 (424)
|+++++++...+..+
T Consensus 574 Wnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAH 588 (775)
T ss_pred Eeccchhhhhhhhhc
Confidence 999999987666543
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-40 Score=280.38 Aligned_cols=324 Identities=19% Similarity=0.291 Sum_probs=256.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceE--EEeeCCCCCCCceEEecceeecCCCccccCCCCc---eeEEEEECCCC--c---
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLASSQLREQPSASS---GSILYWSWSKP--Q--- 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~---g~i~vwd~~~~--~--- 72 (424)
.|+|+|+ ..|+|||||....+.+ .+++... .+|..++ |+++++++++.|..- |.+.+||..+. +
T Consensus 72 ~yiASGD-~sG~vRIWdtt~~~hiLKnef~v~a---G~I~Di~--Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 72 FYIASGD-VSGKVRIWDTTQKEHILKNEFQVLA---GPIKDIS--WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred eEEeecC-CcCcEEEEeccCcceeeeeeeeecc---cccccce--eCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 3899999 9999999998763333 2344443 3455555 888888887776421 45667765421 0
Q ss_pred ----------------------------------eee---eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 73 ----------------------------------VEV---KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 73 ----------------------------------~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
..+ ...|..-|+|++|+|||..+|+++.||++.+||=.+++.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 000 1125668999999999999999999999999999999999
Q ss_pred eeec---cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc--------------------------------
Q 014475 116 KKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES-------------------------------- 160 (424)
Q Consensus 116 ~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------- 160 (424)
..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.....+.
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 9997 89999999999999999999999999999999774322110
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-----------ee-cC----------
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-----------IV-FP---------- 218 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-----------~~-~~---------- 218 (424)
........+.+.+|...|+++..++++ .+|++|+.||.|.-||..++..-+. +. ..
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 011222456778999999999999999 9999999999999999865432211 10 00
Q ss_pred ------------------------------------------------------------cceeEEEECCCCCEEEEEeC
Q 014475 219 ------------------------------------------------------------SVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 219 ------------------------------------------------------------~~i~~~~~~~~~~~l~~~~~ 238 (424)
-...+++++|++..+++|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 03467899999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE-EEeccCCCeeEE
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNI 316 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l 316 (424)
|+++++|.+..... ........|.++|++++++| +.+||+|...+.+.+||+.+.+... .+.-|...|.++
T Consensus 464 Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 464 DGKVHVYSLSGDEL-------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred cceEEEEEecCCcc-------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 99999999988642 23345667999999999999 9999999999999999999887743 344599999999
Q ss_pred EEEecCceeeeccCCCceeeccCCC
Q 014475 317 LVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 317 ~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+|+|+..++|+|+.|-.|.+|++..
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999873
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9e-41 Score=282.42 Aligned_cols=288 Identities=19% Similarity=0.332 Sum_probs=252.8
Q ss_pred CCCceEEecceeecCCC-ccccCCCCceeEEEEECCC------Cceeee---------ecCCCCeeEEEECCCCCEEEEe
Q 014475 35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSK------PQVEVK---------SLPAEPIKPIAANSHGTYIAGG 98 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~------~~~~~~---------~~~~~~v~~~~~s~~~~~l~~~ 98 (424)
|...|.+.+ |.|-.. .+++++.+ -+.++|++.. .+..++ ......|++++|+.+|..||+|
T Consensus 177 ~~~~V~~~~--WnP~~~~llasg~~~-s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 177 HESEVFICA--WNPLRDGLLASGSGD-STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred CCCceEEEe--cCchhhhhhhccCCc-cceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 567788888 999988 67777776 9999999874 111111 1124689999999999999999
Q ss_pred cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
..||.++||+ ..|.++.++..|.++|.++.|+..|.+|++++.||++.+||..+ ....+.+.-|..+-
T Consensus 254 ~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-----------g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 254 SEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-----------GTVKQQFEFHSAPA 321 (524)
T ss_pred ecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-----------ceEEEeeeeccCCc
Confidence 9999999999 47888999999999999999999999999999999999999954 44556677788887
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
.++.|-.+ ..+++++.|+.|+++.+....++.++. |.+.|.++.|+|.+.+|++++.|++++||+....
T Consensus 322 lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~------- 391 (524)
T KOG0273|consen 322 LDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS------- 391 (524)
T ss_pred cceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-------
Confidence 77888766 689999999999999999988988888 8999999999999999999999999999998776
Q ss_pred CceeeeeecccCcCeEEEEecC-C---------CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-G---------DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~---------~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 327 (424)
.....+.+|...|..+.|+| + ..+++++.|++|++||+..+.+++.|..|..||.+++|+|+|++||+
T Consensus 392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 56778899999999999987 3 38999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeccCCCCCCCCCcc
Q 014475 328 GSFSNPHTSSRRHGSQLPPPLD 349 (424)
Q Consensus 328 ~~~d~~i~iw~~~~~~~~~~~~ 349 (424)
|+.||.|.+|+.+++++...+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred cCCCCeeEeccccchheeEeec
Confidence 9999999999999887765543
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1e-39 Score=260.21 Aligned_cols=264 Identities=20% Similarity=0.326 Sum_probs=238.5
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC--c-----eee
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-----VEV 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--~-----~~~ 75 (424)
..|++++ .||.+.|||.-+...+..+.. +...|..++ |+|.|+++|.+|-| +...||++... + ...
T Consensus 68 r~ivSaS-qDGklIvWDs~TtnK~haipl---~s~WVMtCA--~sPSg~~VAcGGLd-N~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 68 RRIVSAS-QDGKLIVWDSFTTNKVHAIPL---PSSWVMTCA--YSPSGNFVACGGLD-NKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred CeEEeec-cCCeEEEEEcccccceeEEec---CceeEEEEE--ECCCCCeEEecCcC-ceeEEEecccccccccceeeee
Confidence 4689999 999999999998888877754 335677777 99999999999998 99999999854 2 123
Q ss_pred eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcc
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
...|.+-+.|+.|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++|+-|+..++||++.
T Consensus 141 l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~- 218 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS- 218 (343)
T ss_pred ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-
Confidence 4568999999999885 4688999999999999999999999999999999999999 999999999999999999965
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEH 231 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~ 231 (424)
....+.+.+|+..|++++|.|+| .-+++|+.|++.++||++..+.+..+.++ .+|++++|+..|+
T Consensus 219 ----------~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 219 ----------GQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred ----------cceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 56789999999999999999999 89999999999999999999998888754 6899999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
+|++|..|.++.+||.-.+ +.+..+.+|++.|+++..+| |-.++||+.|..++||.
T Consensus 287 lLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999876 56788999999999999999 99999999999999994
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-39 Score=266.20 Aligned_cols=308 Identities=21% Similarity=0.294 Sum_probs=265.7
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~ 81 (424)
.++|||+ .|..-.||++.+|.....+.+ |...|+++. |+.+|.+||+++.+ |.|+||+..++....... ..+
T Consensus 77 ~l~aTGG-gDD~AflW~~~~ge~~~eltg---HKDSVt~~~--FshdgtlLATGdms-G~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 77 NLVATGG-GDDLAFLWDISTGEFAGELTG---HKDSVTCCS--FSHDGTLLATGDMS-GKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred ceEEecC-CCceEEEEEccCCcceeEecC---CCCceEEEE--EccCceEEEecCCC-ccEEEEEcccCceEEEeecccC
Confidence 4789999 999999999999998777765 557899999 99999999999998 999999999988776665 677
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||+.++.
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~------ 223 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ------ 223 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc------
Confidence 89999999999999999999999999999988889999999999999999999999999999999999997743
Q ss_pred ccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEEC---C
Q 014475 162 RASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALD---P 228 (424)
Q Consensus 162 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~---~ 228 (424)
++.... .......++.++..+ ..++.|+.++.+++-+..+++.+.... +...+.++.+. .
T Consensus 224 -----p~~~~~~~e~~~~~~~~~~~~~--~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 224 -----PLHKITQAEGLELPCISLNLAG--STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred -----eeEEecccccCcCCcccccccc--ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 233332 223456677777777 788899999999999888888766554 23344455444 4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
.=.+.|+|+-||+|.|||+.... ++..-.|..+|+.+.|-+..+|++++.+|.|+.||.++|+++.++.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence 55778999999999999998853 44555689999999999888999999999999999999999999999
Q ss_pred cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|..+|.+++.+|+.++++++|.|++.++++.+
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999864
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-40 Score=269.60 Aligned_cols=284 Identities=19% Similarity=0.370 Sum_probs=256.8
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
.+|.+.|.|++ +.|.++++++++.| ++|+|||+.++++... ..|-..|..+++|+-..|+++++.|+.|+.||++.
T Consensus 148 ~gHlgWVr~va--vdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 148 SGHLGWVRSVA--VDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhccceEEEEe--eCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 45667899999 99999999999998 9999999999998765 45999999999999999999999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
.+.++.+.+|-..|.|+..+|.-..|++|+.|..+++||+++ ...+..+.+|..+|..+.+.+.. ..
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-----------r~~V~~l~GH~~~V~~V~~~~~d--pq 291 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-----------RASVHVLSGHTNPVASVMCQPTD--PQ 291 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-----------cceEEEecCCCCcceeEEeecCC--Cc
Confidence 999999999999999999999999999999999999999966 55688899999999999999877 78
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++|+.|++|++||++.++....+. |...+.+++.+|....|++++.| .|+.|++..+ ..+..+.+|..
T Consensus 292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~ 361 (460)
T KOG0285|consen 292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNA 361 (460)
T ss_pred eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc---------chhhccccccc
Confidence 9999999999999999999888777 78899999999999999999877 4999999987 45666889999
Q ss_pred CeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe--------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR--------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 271 ~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
-|++++.+.+.++++|+++|.+.+||.++|...+... .....|.+.+|...|..|++|..|.+|++|.-...
T Consensus 362 iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 362 IINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 9999999889999999999999999999987665542 12346899999999999999999999999987633
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-39 Score=286.80 Aligned_cols=318 Identities=20% Similarity=0.323 Sum_probs=272.8
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
++||+|- ..|...|+++..-.+++.+.-.. ..|..+. |+..|.++|.++..=|.+.||++.......+ ..|..
T Consensus 278 ~~lvvgF-ssG~f~LyelP~f~lih~LSis~---~~I~t~~--~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~ 351 (893)
T KOG0291|consen 278 NLLVVGF-SSGEFGLYELPDFNLIHSLSISD---QKILTVS--FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD 351 (893)
T ss_pred eEEEEEe-cCCeeEEEecCCceEEEEeeccc---ceeeEEE--ecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence 6799999 99999999999999998876433 5577777 9999999999987668999999999887765 45899
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.+++++++|||+++|+|+.||.|+|||..++-+..++..|...|+.++|+..++.+++++-||+|+.||+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-------- 423 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-------- 423 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 162 RASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 162 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
....+++.. ......|++..|.| ..+++|+.|. .|.+|++++|+.+..+. |.++|.+++|+|.+..|++++.
T Consensus 424 ---YrNfRTft~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 424 ---YRNFRTFTSPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ---cceeeeecCCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 333444443 23445677777777 7888888876 49999999999999998 9999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe----------
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR---------- 307 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~---------- 307 (424)
|.+|++||+-... ..+.++ .+...+..++|.| |+.|+++..||.|.+||.+.+..+..+.
T Consensus 499 DkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 499 DKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred cceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 9999999997753 223333 4667899999999 9999999999999999998776654433
Q ss_pred ----------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 308 ----------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 308 ----------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
......+.+++++||..|++|+....|+++++.++.+.+.+
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 12247899999999999999999999999999988776544
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-40 Score=269.74 Aligned_cols=280 Identities=21% Similarity=0.328 Sum_probs=256.8
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-c
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-G 112 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~ 112 (424)
+...|+.+- |+|+-..+++++.+ ++|++||..+++.. ....|.+.|..++|+..|+++++++.|=.+.+||.++ .
T Consensus 107 ~r~~vt~v~--~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 107 HRSSVTRVI--FHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF 183 (406)
T ss_pred cccceeeee--eccCceEEEEecCC-ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH
Confidence 445567766 99999999999887 99999999999875 3467888999999999999999999998899999987 5
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+ ..+++++.+|...+..+..+.+| ..+
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-----------g~cv~t~~~h~ewvr~v~v~~DG--ti~ 250 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-----------GYCVKTFPGHSEWVRMVRVNQDG--TII 250 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-----------ceeEEeccCchHhEEEEEecCCe--eEE
Confidence 77888899999999999999999999999999999999966 44688999999999999998888 999
Q ss_pred EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC---------------CCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA---------------EHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
++++.|.++++|-+.++++...+. |..++.+++|.|. +.++.+++.|++|++||+.++
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg------ 324 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG------ 324 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC------
Confidence 999999999999999998877776 8889999999763 258999999999999999997
Q ss_pred cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475 257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~ 335 (424)
.++.++.+|...|..++|+| |+||+++.+|+++++||++++++.+++..|..-|+++.|+.+..++++|+-|.+++
T Consensus 325 ---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 325 ---MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred ---eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 78999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 014475 336 SSRR 339 (424)
Q Consensus 336 iw~~ 339 (424)
+|.-
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9974
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=284.02 Aligned_cols=314 Identities=25% Similarity=0.403 Sum_probs=270.7
Q ss_pred EEeecCCCCCceEEEeCCC-----------------------Cce-----E-EEe--eCCCCCCCceEEecceeecCCCc
Q 014475 4 LIASSSVADTGIGCWDLES-----------------------GAE-----Q-LRY--KSCASPPHGLACVGQRFLASSQL 52 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~-----------------------~~~-----~-~~~--~~~~~~~~~v~~~~~~~~~~~~~ 52 (424)
-|.|-+ .||.+.+|.... ++. . ... .........|++.+ |++..+.
T Consensus 203 ~l~tvs-kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~--fH~~t~~ 279 (893)
T KOG0291|consen 203 DLYTVS-KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAA--FHKGTNL 279 (893)
T ss_pred eEEEEe-cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeee--ccCCceE
Confidence 467788 999999998761 111 0 000 11122336678888 9999999
Q ss_pred cccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCC-CcEEEEEccCcceeeeeccccCCeEEEEE
Q 014475 53 REQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASGRLLKKWHAHYRAVTCLVF 130 (424)
Q Consensus 53 l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~i~~~~~ 130 (424)
|+++-.. |...++.+........ .....+|..++|+..|.+||.|+.. |++.||+.++...+...++|...++++++
T Consensus 280 lvvgFss-G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~Y 358 (893)
T KOG0291|consen 280 LVVGFSS-GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAY 358 (893)
T ss_pred EEEEecC-CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEE
Confidence 9999887 9999999988776543 4456899999999999999998765 89999999999999999999999999999
Q ss_pred ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475 131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (424)
Q Consensus 131 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 210 (424)
+|||+++++|+.||.|+|||.. ...+..++..|.+.|+.+.|+..+ +.+++++-||+|+.||+...+
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~-----------SgfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQ-----------SGFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred CCCCcEEEeccCCCcEEEEecc-----------CceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccc
Confidence 9999999999999999999994 466889999999999999999999 899999999999999999999
Q ss_pred eeeeeecCc--ceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475 211 LLRNIVFPS--VIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (424)
Q Consensus 211 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~ 286 (424)
..+++..+. ...|++..|.|..+.+|+.|. .|++|+++++ +.+..+.+|++||.+++|+| +..|+++
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---------qllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---------QLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---------eeeehhcCCCCcceeeEEccccCeEEec
Confidence 999998655 456888899999999999887 7999999998 77889999999999999999 9999999
Q ss_pred CCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+.|.+|++||+-.. ..+.++. +...+..++|+|+|+.|++++.||.|.+||......
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred cccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 99999999998765 3455555 678899999999999999999999999999975543
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-39 Score=253.63 Aligned_cols=273 Identities=22% Similarity=0.353 Sum_probs=225.6
Q ss_pred EEEeecCCCCCceEEEeCCC-----CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-ee
Q 014475 3 LLIASSSVADTGIGCWDLES-----GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~ 76 (424)
.+|.+++ .|.++.+|++.+ |..++.+++|. ..|.-+. .+++|++.++++.| +++++||+.+++.. ..
T Consensus 29 ~~l~sas-rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~--~s~dg~~alS~swD-~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 29 DILVSAS-RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVV--LSSDGNFALSASWD-GTLRLWDLATGESTRRF 101 (315)
T ss_pred ceEEEcc-cceEEEEEEeccCccccCceeeeeeccc---eEecceE--EccCCceEEecccc-ceEEEEEecCCcEEEEE
Confidence 3578889 999999999754 66677777654 5566666 89999999999998 99999999997655 44
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc--cCCeEEEEEccC--CcEEEEeeCCCcEEEEeCC
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSED--GSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~ 152 (424)
..|...|.+++|+||.+.+++|+.|.+|++|++.. .+..++..+ .+.|+|+.|+|+ ...|++++.|++|++||++
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 67999999999999999999999999999999754 444444333 789999999997 6789999999999999995
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (424)
+ .+....+.+|.+.++.++++|+| ..+++|+.||.+.+||++.++.+..+.+...|.+++|+|+...
T Consensus 181 ~-----------~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 181 N-----------CQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred C-----------cchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCcee
Confidence 4 55667788999999999999999 8999999999999999999999999999999999999999888
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeee-eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|+.+... .|+|||+........... .... ..+.......+++|++ |..|++|-.|+.|++|.+.
T Consensus 248 L~~at~~-sIkIwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 248 LCAATAT-SIKIWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EeeccCC-ceEEEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8777655 499999998753321110 1111 1222234456789999 9999999999999999875
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-40 Score=297.48 Aligned_cols=271 Identities=25% Similarity=0.380 Sum_probs=235.5
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 116 (424)
..+.|.. |++++.++|.+-.| ..|++|.+...+..... +... ...+=+.+.|-.+.+.|..+.....
T Consensus 379 ~~v~ca~--fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~lk-~~~~---------l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 379 QGVTCAE--FSDDSSMLACGFVD-SSVRVWSLTPKKLKKLK-DASD---------LSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcceeEe--ecCCcchhhccccc-cEEEEEecchhhhcccc-chhh---------hccccccccchhhhhccccCCceeE
Confidence 5677888 99999877777776 89999988754322111 1111 1122233444456777777777777
Q ss_pred eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
++.+|.++|..+.|+|+.++|++++.|+++|+|.+.+ ...+..+.+|..+|+++.|+|.| .+++|++
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-----------~s~~V~y~GH~~PVwdV~F~P~G--yYFatas 512 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-----------WSCLVIYKGHLAPVWDVQFAPRG--YYFATAS 512 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeeccc-----------ceeEEEecCCCcceeeEEecCCc--eEEEecC
Confidence 8999999999999999999999999999999999955 55677888999999999999998 9999999
Q ss_pred CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
.|++.++|......+++.+. |-+.+.|+.|+|+..++++|+.|.++++||..++ ..+..+.+|.++|+++
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTAL 583 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEE
Confidence 99999999999999988887 8899999999999999999999999999999998 5688899999999999
Q ss_pred EecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+|+| |++|++|+.||.|++||+.+++++..+.+|.+.|.++.|+.+|..||+|+.|..|++||+...
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999 999999999999999999999999999999999999999999999999999999999998744
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-38 Score=269.07 Aligned_cols=320 Identities=16% Similarity=0.203 Sum_probs=255.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee----c
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----L 78 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~----~ 78 (424)
.+++|++ .|++|.+|+=. +.+--..+..|..-|.|+. |+|||.++++++.| |+|.+||=.+++..... .
T Consensus 161 fRi~T~s-dDn~v~ffeGP---PFKFk~s~r~HskFV~~VR--ysPDG~~Fat~gsD-gki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 161 FRIATGS-DDNTVAFFEGP---PFKFKSSFREHSKFVNCVR--YSPDGSRFATAGSD-GKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred eEEEecc-CCCeEEEeeCC---CeeeeecccccccceeeEE--ECCCCCeEEEecCC-ccEEEEcCCCccEEEEecCCCC
Confidence 5789999 99999999944 4433334445667788888 99999999999998 99999998888766433 5
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-----------------------------------------
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----------------------------------------- 117 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----------------------------------------- 117 (424)
|.+.|.+++|+||++.+++++.|.+++|||+.+.+++++
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 899999999999999999999999999999977644333
Q ss_pred --eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc--------------------------------
Q 014475 118 --WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA-------------------------------- 163 (424)
Q Consensus 118 --~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------- 163 (424)
+.+|...|+++..+|++++|++|+.||.|.-|+..++.........
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 3479999999999999999999999999999999775433110000
Q ss_pred -------------ccce-----------------EEeecC--------CcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475 164 -------------SHLY-----------------LHSFTG--------HTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (424)
Q Consensus 164 -------------~~~~-----------------~~~~~~--------~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd 205 (424)
++.. +..++. -.-...+++++|++ ..++.|+.|+.|++|.
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYS 471 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEE
Confidence 0000 000010 11123566778888 8999999999999999
Q ss_pred cCCCcee---eeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475 206 LLKGRLL---RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (424)
Q Consensus 206 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 281 (424)
+...... ..+.|.++|++++++|++.+|+++...+.+.+||..+.. .......-|...|.+++|+| ..
T Consensus 472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~--------~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE--------VKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc--------eecceeeeeeeeEEEEEeCCCce
Confidence 9875533 344599999999999999999999999999999999875 22334445999999999999 99
Q ss_pred EEEEeCCCCcEEEEeCCCCcE-EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 282 LLISGSEDGMVRVWDPITHNI-VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++|||+.|-.|.||+++.... +....+|...|+.+.|-. ...|++.+.|-.|++|++.
T Consensus 544 ~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeccccceEEEEEccChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 999999999999999987543 444557888899999984 4688999999999999874
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=249.29 Aligned_cols=284 Identities=18% Similarity=0.260 Sum_probs=240.4
Q ss_pred eCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCC-ceeee----ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 30 KSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKP-QVEVK----SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~-~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
+.+.+|..++..++ |+|. |..||+++.| ..|++|+...+ ....+ ..|...|++++|+|.|++||+|+.|.+
T Consensus 8 ~~~~gh~~r~W~~a--whp~~g~ilAscg~D-k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVA--WHPGKGVILASCGTD-KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EeecCCCCcEEEEE--eccCCceEEEeecCC-ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 34445667899999 9999 8899999998 99999999842 22222 358899999999999999999999999
Q ss_pred EEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475 104 IYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (424)
Q Consensus 104 v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (424)
+.||.-..+ +++..+.+|..+|.|++|+++|++||+++.|+.|-||.+.. .....+...++.|...|..+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--------ddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--------DDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC--------CCcEEEEeeeccccccccEE
Confidence 999986644 67889999999999999999999999999999999999864 24566788899999999999
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecC---CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLL---KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~---~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
.|+|.. .+|++++.|++|++|+-. .-++...+. +...+.+++|+|.|..|++++.|++++||.....-
T Consensus 157 ~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------ 228 (312)
T KOG0645|consen 157 IWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------ 228 (312)
T ss_pred EEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------
Confidence 999988 899999999999999866 335677776 77799999999999999999999999999876431
Q ss_pred CceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCC------cEE-EEEeccCCCeeEEEEEec-Cceeeecc
Q 014475 258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITH------NIV-RMFRLAKGPVNNILVVRR-PLYLNLGS 329 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~------~~~-~~~~~~~~~v~~l~~s~~-~~~l~~~~ 329 (424)
...|..++..+.|. ...|++++.|+.|++|.-... +.+ ..-..|...|+++.|.|. ..+|++++
T Consensus 229 -------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 229 -------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 12377889999998 789999999999999986542 111 123468889999999995 67999999
Q ss_pred CCCceeeccCC
Q 014475 330 FSNPHTSSRRH 340 (424)
Q Consensus 330 ~d~~i~iw~~~ 340 (424)
+||.+++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999864
No 24
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=267.31 Aligned_cols=332 Identities=37% Similarity=0.588 Sum_probs=272.6
Q ss_pred CeEEEeecCCCCCc-eEEEeCCCCceEEEeeCC-CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-ee
Q 014475 1 MELLIASSSVADTG-IGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS 77 (424)
Q Consensus 1 ~e~~lat~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~ 77 (424)
||..+++.++.|-. +.+||+++|....++++. .....+...+. +.+++++...-..|.+|.+....... ..
T Consensus 5 le~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~ 78 (476)
T KOG0646|consen 5 LEGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYI 78 (476)
T ss_pred eeEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhc
Confidence 57777776646655 999999999999999877 33333333332 36666665544799999998766554 55
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
..+++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|++-+....
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999998654332
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
.. .....+.+.+..|.-+|+++...+.+...++++++.|.++++||+..+.++..+..+..+.+++++|.++.+++|+
T Consensus 159 ~~--~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 159 DN--DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cc--CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 22 2256678899999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCC-------CcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 238 RDGSIYIAALNAESPSTS-------SYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
.+|.|.+.++........ ......+..+.+|.+ +|+|++.+- +..|++|+.||.|+|||+.+.++++++.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999998866542211 122344667788988 999999999 9999999999999999999999999998
Q ss_pred ccCCCeeEEEEEecCceeeec-cCCCceeeccCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRH 340 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~ 340 (424)
...++|+.+.+.|-.+-...+ .....+..|++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred hhccccceeEeeccccceecccccCccCCchHhh
Confidence 778999999997754444443 233334455443
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-39 Score=284.97 Aligned_cols=313 Identities=17% Similarity=0.224 Sum_probs=271.7
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceee-cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s 89 (424)
.|..+.++|.++.+..+.+-+.. +.|..+. |. |..+.+++++.. +.+++++..+....+...|.+.|.++...
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~--~lG~e~~~laVATNs-~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMK--FLGPEESHLAVATNS-PELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ccceEEEEEccccEEehhhcCCc---hhheeee--ecCCccceEEEEeCC-CceEEEecCCCceEEEeCchhheeeeeec
Confidence 46899999999999988887655 4455554 44 788999999988 99999999999998889999999999977
Q ss_pred CCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 164 (424)
.+|-+|++|+.|.++++|.++++ .++....+|...|.+++++.. ..+|+++|.|+++++|++....+... ...
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~ 452 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIV 452 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--cce
Confidence 78899999999999999988544 345566889999999999763 46899999999999999976211110 111
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (424)
.........|...|++++++|+. ..++|||.|++.+||++........+. |...+.++.|+|..+.+++++.|++|+
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ehhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 11112446799999999999998 999999999999999999888888888 999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP 322 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (424)
||.+.+. .+++++.+|...|..+.|-. +..|++++.||.|++|+++++++++++..|...|++++.+|..
T Consensus 531 IW~is~f---------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 531 IWSISTF---------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred EEEeccc---------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 9999996 88999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCceeeccCCCC
Q 014475 323 LYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 323 ~~l~~~~~d~~i~iw~~~~~ 342 (424)
.++++|+.||.|.+|.=.+.
T Consensus 602 ~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ceeEecCCCeEEEEeecCcH
Confidence 99999999999999975443
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-39 Score=268.33 Aligned_cols=287 Identities=15% Similarity=0.246 Sum_probs=245.0
Q ss_pred eeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475 29 YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDI 104 (424)
Q Consensus 29 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 104 (424)
.+....|.+.|..+. |+++|++||++++| .+..+|++..... .....|..+|..+.||||.++|++++.+..+
T Consensus 217 ~qil~~htdEVWfl~--FS~nGkyLAsaSkD-~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQ--FSHNGKYLASASKD-STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEE--EcCCCeeEeeccCC-ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 334456778899999 99999999999998 9999999764332 2335689999999999999999999999999
Q ss_pred EEEEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEE
Q 014475 105 YMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIV 182 (424)
Q Consensus 105 ~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 182 (424)
.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+.+..||+.... ...+++ ....|.+++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------------~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------------LGNWEGVRDPKVHDLA 361 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------------hhcccccccceeEEEE
Confidence 999999999887774 356889999999999999999999999999995421 222332 235689999
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
+.++| +++++.+.|..+++++..+......+....+|++++.+.+++++++.-.+..+++||+... ..+
T Consensus 362 it~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---------~lv 430 (519)
T KOG0293|consen 362 ITYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---------KLV 430 (519)
T ss_pred EcCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---------hHH
Confidence 99999 8999999999999999988877777778899999999999999999999999999999964 566
Q ss_pred eeecccCcC--eEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec-CceeeeccCCCceeec
Q 014475 263 GSLSDHSKA--VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSS 337 (424)
Q Consensus 263 ~~~~~~~~~--i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~d~~i~iw 337 (424)
..+.+|... +..-+|.- ..++++|++|+.|+||+..+++++..+.+|...|++++|+|. ..++|+||+||+|+||
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 777777653 33445554 579999999999999999999999999999999999999995 5688999999999999
Q ss_pred cCCC
Q 014475 338 RRHG 341 (424)
Q Consensus 338 ~~~~ 341 (424)
....
T Consensus 511 g~~~ 514 (519)
T KOG0293|consen 511 GPSD 514 (519)
T ss_pred cCCc
Confidence 8763
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-38 Score=252.35 Aligned_cols=286 Identities=18% Similarity=0.278 Sum_probs=247.1
Q ss_pred CCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475 31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd 108 (424)
...+|...|..+. |+|+|.++|++|.| ..|.+|++.... .-....|.+.|..+.|.+|++.+++++.|.+|+.||
T Consensus 42 ~l~gh~geI~~~~--F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 42 LLPGHKGEIYTIK--FHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hcCCCcceEEEEE--ECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 3445777888888 99999999999998 999999976543 234468999999999999999999999999999999
Q ss_pred ccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475 109 VASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 109 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (424)
.++|+.++.+++|...|+.+.-+. ...++.+++.||++++||+++ ...++++ ..+-+++++.|...+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-----------k~~~~t~-~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-----------KEAIKTF-ENKYQLTAVGFKDTS 186 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-----------cchhhcc-ccceeEEEEEecccc
Confidence 999999999999999999998544 345677899999999999965 2223322 235678899998888
Q ss_pred ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
..+.+|+-|+.|++||++.+.....+. |.++|+.+..+|+|.++.+-+.|.++++||++.-.+.. +++..+.
T Consensus 187 --~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~ 259 (338)
T KOG0265|consen 187 --DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQ 259 (338)
T ss_pred --cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC-----ceEEEee
Confidence 899999999999999999999999888 89999999999999999999999999999998865432 4566666
Q ss_pred ccC----cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 267 DHS----KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 267 ~~~----~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
+|. .....++|+| +..+.+|+.|..+++||......+..+.+|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 653 3456688999 89999999999999999999999999999999999999999999999999999998643
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.1e-37 Score=270.08 Aligned_cols=280 Identities=28% Similarity=0.493 Sum_probs=248.9
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
+|...|.+++ |+|+++++++++.+ |.|.+|++.+.+.. ....|...+..+.|+|+++++++++.+|.|++||+.++
T Consensus 7 ~h~~~i~~~~--~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 7 GHTGGVTCVA--FSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred ccCCCEEEEE--EcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 3557799999 99999999999987 99999999877543 33557788999999999999999999999999999998
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+....+..|...+.++.|+++++++++++.+|.+.+||+++ ......+..|...+.++.|++++ .++
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l 150 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-----------GKCLTTLRGHTDWVNSVAFSPDG--TFV 150 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------cEEEEEeccCCCcEEEEEEcCcC--CEE
Confidence 88888889999999999999988888888899999999954 33455666888999999999986 788
Q ss_pred EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (424)
++++.++.+++||+++++....+. +...+.+++|+|+++.+++++.++.+++||++.. ..+..+..|...
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~ 221 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENG 221 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCc
Confidence 888889999999999888887777 6668999999999999999999999999999875 445566678889
Q ss_pred eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
+.++.|+| +.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999 88888888899999999999999999999999999999999999999999999999996
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-38 Score=260.32 Aligned_cols=269 Identities=22% Similarity=0.336 Sum_probs=242.1
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLP 79 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~ 79 (424)
+.++|+++ .|++|++||.++|+....+++|. +++..++ |+..|+++++++.| =.+++||.++.. ......|
T Consensus 120 ~~~v~~as-~d~tikv~D~~tg~~e~~LrGHt---~sv~di~--~~a~Gk~l~tcSsD-l~~~LWd~~~~~~c~ks~~gh 192 (406)
T KOG0295|consen 120 EALVVSAS-EDATIKVFDTETGELERSLRGHT---DSVFDIS--FDASGKYLATCSSD-LSAKLWDFDTFFRCIKSLIGH 192 (406)
T ss_pred ceEEEEec-CCceEEEEEccchhhhhhhhccc---cceeEEE--EecCccEEEecCCc-cchhheeHHHHHHHHHHhcCc
Confidence 45788999 99999999999999988888766 4577777 99999999999998 779999998743 2344678
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..+..+.||..+++++.|.+|++|-+.+
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t------ 266 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT------ 266 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc------
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcC-------------ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGG-------------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (424)
..+...+..|+.+|.+++|.|.. .+.++.+++.|++|++||+.++.++.++. |...|..++
T Consensus 267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 33455678899999999997632 12589999999999999999999999988 999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
|+|.|++|+++.+|+++++||+++. ++...+..|+.-++++.|+. ..+++||+-|.++++|.-
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999997 77888889999999999998 889999999999999974
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.7e-38 Score=288.02 Aligned_cols=280 Identities=27% Similarity=0.440 Sum_probs=247.4
Q ss_pred CCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc-cC
Q 014475 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-AS 111 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~-~~ 111 (424)
...+.++. |+++|+.+++++.+ +.+++|+....+ .. ....|...|..++|+|+++++++++.|++|+|||+ ..
T Consensus 159 ~~sv~~~~--fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 159 CPSVTCVD--FSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cCceEEEE--EcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 57788888 99999999999888 999999996655 22 22568899999999999999999999999999999 55
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
+..++++++|...|++++|+|+++++++|+.|++|++||+++ ..+...+.+|...|++++|++++ ..
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-----------~~~~~~l~~hs~~is~~~f~~d~--~~ 302 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-----------GECVRKLKGHSDGISGLAFSPDG--NL 302 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----------CeEEEeeeccCCceEEEEECCCC--CE
Confidence 588999999999999999999999999999999999999954 55788899999999999999999 89
Q ss_pred EEEEeCCCcEEEEecCCCc--eeeeee-cCc--ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 192 IVSASEDRTCKVWSLLKGR--LLRNIV-FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~--~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
|++++.|+.|++||+.++. +...+. +.. ++++++|+|++.++++++.|+.+++||++.. .......
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~~ 373 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---------KSVGTYT 373 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---------cceeeec
Confidence 9999999999999999998 445554 222 6899999999999999999999999999986 4566677
Q ss_pred ccCcCe---EEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeeecc--CCCceeeccC
Q 014475 267 DHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGS--FSNPHTSSRR 339 (424)
Q Consensus 267 ~~~~~i---~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~ 339 (424)
+|...+ .+...++ +.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++ .|+.+++|..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 374 GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 776643 3334455 899999999999999999999999999999 89999999999999999998 7889999986
Q ss_pred C
Q 014475 340 H 340 (424)
Q Consensus 340 ~ 340 (424)
.
T Consensus 454 ~ 454 (456)
T KOG0266|consen 454 D 454 (456)
T ss_pred C
Confidence 5
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.2e-39 Score=260.67 Aligned_cols=284 Identities=19% Similarity=0.317 Sum_probs=244.8
Q ss_pred EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcE
Q 014475 26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDI 104 (424)
Q Consensus 26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 104 (424)
+.++........+|.|+. .|...+++|..| ++|++||.++.++. ...+|.+.|.|+.|. .+.+++|+.|.+|
T Consensus 187 ~~rinc~Se~skgVYClQ----YDD~kiVSGlrD-nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTv 259 (499)
T KOG0281|consen 187 LQRINCRSENSKGVYCLQ----YDDEKIVSGLRD-NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTV 259 (499)
T ss_pred eeeecCCcccCCceEEEE----ecchhhhccccc-CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceE
Confidence 344555555667899877 466778888887 99999999887765 457899999999995 5699999999999
Q ss_pred EEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 105 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
++||.++++++.++-.|...|..+.|+ ..++++++.|..+.+||+.... .......+.+|...|+.+.|+
T Consensus 260 rvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps--------~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 260 RVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT--------DITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch--------HHHHHHHHhhhhhheeeeccc
Confidence 999999999999999999999999998 5589999999999999997632 223445678999999999885
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
. +++++++.|.+|++|++.+++.++.+. |...|.|+.+ .++++++|+.|.+|++||+..+ .++.
T Consensus 330 ~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---------~cLR 394 (499)
T KOG0281|consen 330 D----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLR 394 (499)
T ss_pred c----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---------HHHH
Confidence 4 699999999999999999999999998 8888988877 6899999999999999999997 6788
Q ss_pred eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEEEEecCceeeeccCCCce
Q 014475 264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH 334 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i 334 (424)
.+++|+.-|.++.|. .+.+++|+.||+|++||+..+. ++.++..|.+.|..+.|. ...+++++.|.+|
T Consensus 395 vLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtI 471 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTI 471 (499)
T ss_pred HHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeE
Confidence 999999999999997 6889999999999999998764 345566789999999995 5689999999999
Q ss_pred eeccCCCCCC
Q 014475 335 TSSRRHGSQL 344 (424)
Q Consensus 335 ~iw~~~~~~~ 344 (424)
.+||...+.+
T Consensus 472 LiWdFl~~~~ 481 (499)
T KOG0281|consen 472 LIWDFLNGPP 481 (499)
T ss_pred EEEEcCCCCc
Confidence 9999986644
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-37 Score=280.18 Aligned_cols=285 Identities=21% Similarity=0.382 Sum_probs=237.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC-ceeeeecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~~~~ 82 (424)
+||.|- .|..|++|.+...+ ++.++.... + ..+=+.+.| -.+.+-|-++. .......|.+|
T Consensus 392 mlA~Gf-~dS~i~~~Sl~p~k-l~~lk~~~~----l-----------~~~d~~sad-~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 392 MLACGF-VDSSVRVWSLTPKK-LKKLKDASD----L-----------SNIDTESAD-VDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred hhhccc-cccEEEEEecchhh-hccccchhh----h-----------ccccccccc-hhhhhccccCCceeEEeecCCCc
Confidence 578888 99999999988543 333332110 1 011111222 22444444433 33346789999
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
|..+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|+++.|+|.|-+|||++.|++.++|...
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d---------- 523 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD---------- 523 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...+++.+.+|.+.|.|+.|+|+. .++++||.|.+|++||+.+|..++.+. |.++|.+++|+|+|++|++|+.||.
T Consensus 524 -~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 524 -HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred -cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 355678899999999999999999 999999999999999999999999998 9999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------------------
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN------------------- 301 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------------------- 301 (424)
|.+||+.++ ..+..+.+|.+.|.++.|+. |..||+|+.|.+|++||+....
T Consensus 601 I~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 671 (707)
T KOG0263|consen 601 IKIWDLANG---------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQEN 671 (707)
T ss_pred EEEEEcCCC---------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccC
Confidence 999999997 67888999999999999999 9999999999999999986422
Q ss_pred -----EEEEEeccCCCeeEEEEEecCceeeec
Q 014475 302 -----IVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 302 -----~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
++..+..-..+|..+.|......|+.|
T Consensus 672 ~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 672 NASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 344444445588888888776555554
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-37 Score=272.41 Aligned_cols=280 Identities=18% Similarity=0.310 Sum_probs=257.8
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 113 (424)
+...|.++. ++|....++++-.+ |.|.+||.++...... .....||++..|-+..+++++|+.|..|+||+..+++
T Consensus 12 rSdRVKsVd--~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 12 RSDRVKSVD--FHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred cCCceeeee--cCCCCceEEEeeec-CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 557788999 99999999999988 9999999998776543 3467899999999999999999999999999999999
Q ss_pred eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
.+..+..|.+.|.+++.+|...+++++|.|-.|++||.+. ...+.+++.+|..-|.+++|+|... +.++
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----------~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa 157 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----------EWACEQTFEGHEHYVMQVAFNPKDP-NTFA 157 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----------ceeeeeEEcCcceEEEEEEecCCCc-ccee
Confidence 9999999999999999999999999999999999999964 5678889999999999999999876 8999
Q ss_pred EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++-|++|++|.+.+..+..++. |...|+|+++-+ +..+|++|++|..+++||.++. .+++++.+|..
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~ 228 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTN 228 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------HHHHHhhcccc
Confidence 99999999999999888888888 899999999988 4579999999999999999996 78999999999
Q ss_pred CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
.|..+.|+| -.++++|++||+++||+..+.+...++.-.-+.+++++-.+.+..++.|.++|.+.+=
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 999999999 8999999999999999999999999988888899999999999999999888877653
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-36 Score=298.91 Aligned_cols=307 Identities=15% Similarity=0.195 Sum_probs=248.6
Q ss_pred CCceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--------eeeeecCCC
Q 014475 12 DTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAE 81 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------~~~~~~~~~ 81 (424)
+|-+++|+..+.+....++. ...|...|.+++ |+|+++++++++.| +.|++|+..... ......+..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~--fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIG--FDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEE--ECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEecccC
Confidence 56788999887666554432 234677899999 99999999999998 999999975421 112223456
Q ss_pred CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.+.+++|+| ++.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----- 608 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----- 608 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-----
Confidence 899999987 578999999999999999999999999999999999999997 7889999999999999999652
Q ss_pred ccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCCCCEEEEE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (424)
..+..+..+ ..+.++.|.+ ++ ..+++|+.||.|++||+++.+ .+..+. |...|.++.|. ++.+++++
T Consensus 609 ------~~~~~~~~~-~~v~~v~~~~~~g--~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 609 ------VSIGTIKTK-ANICCVQFPSESG--RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred ------cEEEEEecC-CCeEEEEEeCCCC--CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence 233444433 5788999865 44 899999999999999998765 344444 78899999997 67899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE---------
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--------- 306 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~--------- 306 (424)
+.|+.|++||++..... ....++..+.+|...+.+++|+| +.+|++|+.|+.|++|+.....++..+
T Consensus 679 s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 679 STDNTLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred ECCCEEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 99999999999754211 11245678889999999999999 999999999999999998766544332
Q ss_pred ----eccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 307 ----RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 307 ----~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
..+...|.+++|+|++..|++|+.||.|++|++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 224457999999999999999999999999985
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-37 Score=237.46 Aligned_cols=279 Identities=18% Similarity=0.264 Sum_probs=243.5
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
.+..+|.++. |.-+|++.+++|+| .+|++|+...+... .-..|...|..++.+.|+..+++|+.|..+.+||+++|
T Consensus 15 ~~qgaV~avr--yN~dGnY~ltcGsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 15 CAQGAVRAVR--YNVDGNYCLTCGSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred ccccceEEEE--EccCCCEEEEcCCC-ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 3446677777 99999999999998 99999998877665 34568999999999999999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+.++.+++|.+.|+.+.|+.+...+++|+.|..+++||.++ ....+++.+......|.++.+.. ..+
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS---------~s~ePiQildea~D~V~Si~v~~----heI 158 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS---------RSFEPIQILDEAKDGVSSIDVAE----HEI 158 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---------CCCCccchhhhhcCceeEEEecc----cEE
Confidence 99999999999999999999999999999999999999987 66778888888889999988864 578
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
++|+.||+++.||++.|+..... ...+|++++|+++++..++++.|+++++.|-.++ +.+...++|...-
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~e 228 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNME 228 (307)
T ss_pred EeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchh---------HHHHHhcccccce
Confidence 99999999999999998765433 6789999999999999999999999999999997 6778888887654
Q ss_pred EE--EEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEecCceeeeccCCCceeeccC
Q 014475 273 TC--LAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 273 ~~--~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
.. .+++. ...+++|++||.|.+||+.....+..+..+... |+++.++|....++++. ++.+.+|.-
T Consensus 229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 43 45556 889999999999999999999999999988887 89999999877776664 344555643
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-37 Score=254.94 Aligned_cols=292 Identities=23% Similarity=0.263 Sum_probs=250.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECC---CCCEEEEecCCCcEEEEEcc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~ 110 (424)
.|.+.|.++. .. ++.+++++.| |.+++||...........|.++|.+++|.- ....|++++.|.++++|..+
T Consensus 103 ~hdDWVSsv~--~~--~~~IltgsYD-g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVK--GA--SKWILTGSYD-GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhc--cc--CceEEEeecC-CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 3556666655 32 7899999998 999999999888888899999999888753 23469999999999999998
Q ss_pred Ccce----eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc--------------hhcccccccceEEeec
Q 014475 111 SGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE--------------ECESQRASHLYLHSFT 172 (424)
Q Consensus 111 ~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~ 172 (424)
.++. +...++|...|.++...+++..+++|+.|.+|.+|+..+... ..........++..+.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 7743 333459999999999999999999999999999999432111 0112233455778899
Q ss_pred CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
+|..+|.++.|++. ..+++++.|.+|+.||+.++.....+..+..++++..+|..++|++|+.|..+++||.+++..
T Consensus 258 GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 99999999999984 789999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCeeEEEEEecCceeeecc
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
. -....+.+|.+.|.++.|+| ..+|++|+.|+++++||+++.+ ++..+.+|...|.++.|. ++..|++|+
T Consensus 335 s------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGG 407 (423)
T KOG0313|consen 335 S------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG 407 (423)
T ss_pred c------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEecc
Confidence 2 45678889999999999999 6789999999999999999887 999999999999999998 456999999
Q ss_pred CCCceeeccCC
Q 014475 330 FSNPHTSSRRH 340 (424)
Q Consensus 330 ~d~~i~iw~~~ 340 (424)
.|.+++++...
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999998754
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=238.67 Aligned_cols=272 Identities=17% Similarity=0.352 Sum_probs=227.8
Q ss_pred EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---ee
Q 014475 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~ 76 (424)
.+|||++ .|+.|++|+..++. +...+. .+|.+.|..++ |+|.|++|++++-| .++.||.-..++.. ..
T Consensus 28 ~ilAscg-~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvA--wsp~g~~La~aSFD-~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 28 VILASCG-TDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVA--WSPHGRYLASASFD-ATVVIWKKEDGEFECVATL 101 (312)
T ss_pred eEEEeec-CCceEEEEecCCCCcEEEEEecc--ccchheeeeee--ecCCCcEEEEeecc-ceEEEeecCCCceeEEeee
Confidence 4799999 99999999988532 333333 36788999999 99999999999998 99999998766654 34
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
..|...|.|++|+++|++||+++.|..|-||.+..+ ++...+++|...|..+.|+|...+|++++.|.+|++|+-..
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC
Confidence 579999999999999999999999999999999754 56788899999999999999999999999999999998752
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
.....+..++.+|...|.+++|.+.| ..|++++.|++++||-..+. ....|...+..+.|. ...+
T Consensus 182 --------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 182 --------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred --------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence 25677889999999999999999998 89999999999999986522 122367889999998 6679
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceee-eeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCC
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~ 298 (424)
++++.|+.|++|.-..... .. .++.+ .....|...|++++|+| .+.|++|+.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d-~p--~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPD-EP--SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCC-Cc--hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999999998764211 11 11222 24457999999999999 8899999999999999864
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=263.94 Aligned_cols=268 Identities=20% Similarity=0.325 Sum_probs=234.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~ 81 (424)
-.|++|+ ..|.+.||+..+-.-. + ....|...|.++. |++++.+++++..+ |.|++|+..-..+..... |.+
T Consensus 109 RRLltgs-~SGEFtLWNg~~fnFE-t--ilQaHDs~Vr~m~--ws~~g~wmiSgD~g-G~iKyWqpnmnnVk~~~ahh~e 181 (464)
T KOG0284|consen 109 RRLLTGS-QSGEFTLWNGTSFNFE-T--ILQAHDSPVRTMK--WSHNGTWMISGDKG-GMIKYWQPNMNNVKIIQAHHAE 181 (464)
T ss_pred ceeEeec-ccccEEEecCceeeHH-H--HhhhhcccceeEE--EccCCCEEEEcCCC-ceEEecccchhhhHHhhHhhhh
Confidence 3688999 9999999996322111 1 2235667888888 99999999999998 999999988766665554 459
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++++.|..|++||.++
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-------- 253 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-------- 253 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--------
Confidence 999999999999999999999999999999998889999999999999999999999999999999999966
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC-CCCEEEEEeCC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRD 239 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~d 239 (424)
..++.++..|+..|..+.|++++ ++|++++.|..++++|+++.+.+..+. |...++++.|+| ...+|.+|+.|
T Consensus 254 ---g~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 254 ---GSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred ---cchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 44677888999999999999999 999999999999999999888888877 999999999999 67888999999
Q ss_pred CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|.|..|.+.... .....-.+|...|.+++|+| |.+|++|+.|.++++|.-.
T Consensus 329 gsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 329 GSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CceEEEeccccc--------cccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999998543 23334457999999999999 9999999999999999743
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-38 Score=267.47 Aligned_cols=283 Identities=19% Similarity=0.314 Sum_probs=246.7
Q ss_pred CCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCc-ee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475 33 ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ-VE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~ 109 (424)
.+|..+|.++. |.| .+.++++++.| +.|+||++.... +. ....|..+|..++|+++|..+++++.|+.|++||+
T Consensus 211 ~gH~kgvsai~--~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 211 SGHTKGVSAIQ--WFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred cCCccccchhh--hccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 45667888888 999 88999999998 999999998743 32 34568999999999999999999999999999999
Q ss_pred cCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475 110 ASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (424)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (424)
++|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++ ...++.+..|-+.|..+.|-+.+
T Consensus 288 ETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------~kvvqeYd~hLg~i~~i~F~~~g- 354 (503)
T KOG0282|consen 288 ETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------GKVVQEYDRHLGAILDITFVDEG- 354 (503)
T ss_pred ccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------hHHHHHHHhhhhheeeeEEccCC-
Confidence 9999999886 45678999999988 8899999999999999976 33567778899999999999999
Q ss_pred eeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 189 SATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 189 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
..+++++.|+++++|+.+.+.+++.+. ......++..+|+++++++-+.|+.|.++.+...-. ...-..+.
T Consensus 355 -~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~fe 427 (503)
T KOG0282|consen 355 -RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRFE 427 (503)
T ss_pred -ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhhc
Confidence 899999999999999999888777766 445678899999999999999999999999766432 13345667
Q ss_pred ccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-ceeeeccCCCceeecc
Q 014475 267 DHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-LYLNLGSFSNPHTSSR 338 (424)
Q Consensus 267 ~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~d~~i~iw~ 338 (424)
+|.. .-..+.||| |++|++|+.||.+.+||.++-+++..++.|.+++..+.|+|.. ..+|+++.||.|++|+
T Consensus 428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 7754 456688999 9999999999999999999999999999999999999999964 6789999999999996
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=252.57 Aligned_cols=256 Identities=18% Similarity=0.287 Sum_probs=235.6
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 156 (424)
..|.+.|.|+++.|.+.+|++|+.|++++|||+.+|++..++.+|-..|..+++++-..++++++.|+.|+.||++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe---- 223 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE---- 223 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech----
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (424)
..+.++.+.+|-+.|.+++..|.- ..|++|+.|.++++||+++...+..+. |..+|..+.+.|.+..+++
T Consensus 224 -------~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 224 -------YNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred -------hhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 456678889999999999999988 899999999999999999999999998 9999999999998999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCee
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (424)
|+.|++|++||++.+ +....+..|...+.+++.+| ...+++++.|. |+-|++..|..++.+.+|.+-|+
T Consensus 295 ~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred ecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence 999999999999998 55677888999999999999 78888888775 99999999999999999999999
Q ss_pred EEEEEecCceeeeccCCCceeeccCCCCCCCCCccccccccc
Q 014475 315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD 356 (424)
Q Consensus 315 ~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 356 (424)
+++...|+ ++++|++.|.+.+||.+++..++..+..+...+
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 99999887 889999999999999999887777655554444
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-35 Score=243.14 Aligned_cols=296 Identities=17% Similarity=0.228 Sum_probs=248.5
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
..|...|.+++ .+|+.++++++|.| ..-.+|+..+++.. ....|++.|+++.|+.+|.+||+|+.+|.|+||+..+
T Consensus 61 ~~H~~svFavs--l~P~~~l~aTGGgD-D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 61 DKHTDSVFAVS--LHPNNNLVATGGGD-DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred hhcCCceEEEE--eCCCCceEEecCCC-ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 34567899999 99999999999988 99999999988765 4467999999999999999999999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
+.....+...-..+.=+.|+|.+..|+.|+.||.+-+|.+. +....+.+.+|..++++-.|.|+| +.
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-----------~~~~~kv~~Gh~~~ct~G~f~pdG--Kr 204 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-----------SQALCKVMSGHNSPCTCGEFIPDG--KR 204 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC-----------CcceeeEecCCCCCcccccccCCC--ce
Confidence 99888887667788889999999999999999999999994 345678899999999999999998 99
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
++++..||+|++||+.+++++..+. ......++.++..+..++.|+.++.+++-+..+++....... ........+.
T Consensus 205 ~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e 283 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQE 283 (399)
T ss_pred EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccch
Confidence 9999999999999999999998887 345678888888999999999999998888777643211110 0011112355
Q ss_pred cCeEEEEecC----CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 270 KAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 270 ~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
..+.++.+.| -.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|.|+.||.+++++.
T Consensus 284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceE
Confidence 5556665555 5688999999999999999877666555 889999999999 789999999999999999999874
Q ss_pred CC
Q 014475 346 PP 347 (424)
Q Consensus 346 ~~ 347 (424)
..
T Consensus 362 ~~ 363 (399)
T KOG0296|consen 362 FT 363 (399)
T ss_pred EE
Confidence 33
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=264.64 Aligned_cols=329 Identities=17% Similarity=0.261 Sum_probs=277.2
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
..||.|- .||.|+||+.+++....++.+| ..+|+++. |...|.++++++.| +.|.+||+-...-..+ ..|.+
T Consensus 78 l~lAVGY-aDGsVqif~~~s~~~~~tfngH---K~AVt~l~--fd~~G~rlaSGskD-t~IIvwDlV~E~Gl~rL~GHkd 150 (888)
T KOG0306|consen 78 LLLAVGY-ADGSVQIFSLESEEILITFNGH---KAAVTTLK--FDKIGTRLASGSKD-TDIIVWDLVGEEGLFRLRGHKD 150 (888)
T ss_pred ceEEEEe-cCceEEeeccCCCceeeeeccc---ccceEEEE--EcccCceEeecCCC-ccEEEEEeccceeeEEeecchH
Confidence 3578888 9999999999999888777665 47799999 99999999999998 9999999977665544 56899
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch----
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE---- 157 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---- 157 (424)
.|+..-|..+.+++++.+.|+.|++||+++..+..+.-.|.+.++.+++.+ +.+++++.|+.+++|++......
T Consensus 151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~ 228 (888)
T KOG0306|consen 151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN 228 (888)
T ss_pred HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence 999999999899999999999999999999999999999999999999986 78999999999999998110000
Q ss_pred --------------------------------hc-------------------------------cc------c------
Q 014475 158 --------------------------------CE-------------------------------SQ------R------ 162 (424)
Q Consensus 158 --------------------------------~~-------------------------------~~------~------ 162 (424)
+. .. .
T Consensus 229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 00 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 014475 163 -------------------------------------------------------------------------------- 162 (424)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (424)
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~ 388 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL 388 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence
Q ss_pred -----------------------------------------------------cccceEEeecCCcCceeEEEEEEcCce
Q 014475 163 -----------------------------------------------------ASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 163 -----------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
.....+.+...|.+.|++++.+|++
T Consensus 389 ~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-- 466 (888)
T KOG0306|consen 389 ASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-- 466 (888)
T ss_pred eecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--
Confidence 0000011125677777778878888
Q ss_pred eEEEEEeCCCcEEEEecCC-----Cce--------eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 190 ATIVSASEDRTCKVWSLLK-----GRL--------LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~-----~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
..+++|+.|.+|++||..- +.. .+.+..+..|.|+.+|||+++|+++--|.++++|-+++-
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------ 540 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------ 540 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------
Confidence 8899999999999999741 111 134446788999999999999999999999999999995
Q ss_pred cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475 257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~ 335 (424)
+....+.+|.-||.||..+| +..++|||.|.+|+||-+.-|.+-+.+-+|...|.++.|-|+..++.++|.|+.++
T Consensus 541 ---KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 541 ---KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred ---eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence 67778899999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCcccc
Q 014475 336 SSRRHGSQLPPPLDKY 351 (424)
Q Consensus 336 iw~~~~~~~~~~~~~~ 351 (424)
-||-...+..+.+..+
T Consensus 618 qWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLDGH 633 (888)
T ss_pred eechhhhhhheeeccc
Confidence 9998877776665544
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-36 Score=239.42 Aligned_cols=259 Identities=23% Similarity=0.273 Sum_probs=227.9
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
....|++.|+.+.|+|+|.+||+|+.|..|.+|+.. .-+-...+++|.+.|..+.|.+|++.+++++.|.+++.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 445689999999999999999999999999999954 3355677889999999999999999999999999999999966
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
.+..+.+++|..-++.+.-+.-+. ..+.+++.|+++++||+++...++.+..+.+++++.|..++..+
T Consensus 122 -----------G~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 122 -----------GKRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred -----------ceeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 445777889999999998665554 77889999999999999999999999889999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----CcEEEEEec
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRL 308 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----~~~~~~~~~ 308 (424)
.+|+-|+.|++||++.+ .....+.+|..+|+.+..+| |.++.+-+.|.++++||++. .+++..+.+
T Consensus 190 ~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred eeccccCceeeeccccC---------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 99999999999999987 56889999999999999999 99999999999999999984 355777877
Q ss_pred cCC----CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCccccccc
Q 014475 309 AKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTS 354 (424)
Q Consensus 309 ~~~----~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 354 (424)
|.. ....++|+|++.++.+|+.|..+++||.........+..+..+
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS 310 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee
Confidence 653 4567899999999999999999999999987766655555433
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=262.78 Aligned_cols=317 Identities=18% Similarity=0.227 Sum_probs=268.0
Q ss_pred CCCceEEEeCCC-Cce------EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 11 ADTGIGCWDLES-GAE------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 11 ~dg~i~vwd~~~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
++.++..+.++. +.. ...+ ...+|...|..++ ++.+...+++++. +.|++|+..+.+....... +-+
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~--vS~d~~~~~Sga~--~SikiWn~~t~kciRTi~~-~y~ 415 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLC--VSSDSILLASGAG--ESIKIWNRDTLKCIRTITC-GYI 415 (888)
T ss_pred ecCceEEEEeccCCCCCcccccccee-eeccchhheeEEE--eecCceeeeecCC--CcEEEEEccCcceeEEecc-ccE
Confidence 467888888775 222 1112 2235667788888 9999998888887 7999999998887655444 488
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
.+..|-|.++++++|...|.+.+||+.+...+.+.+.|.+.|++++.+||++.+++||.|.+|++||..-... ......
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~ 494 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK 494 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854322 000000
Q ss_pred ccceE--EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475 164 SHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 164 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
+...+ ...-.-...|.|+.++|++ ++|+.+--|.+|++|-+++-+....+. |.-||.|+..+||++.+++|+.|.
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 00000 0112245789999999999 999999999999999999988777766 899999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
.|++|-++-+ .+...+.+|...|.++.|.| ...+.++|.|+.|+-||-...+.++.+.+|...|++++.+
T Consensus 573 nVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 573 NVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred ceEEeccccc---------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 9999999997 56778889999999999999 8899999999999999999999999999999999999999
Q ss_pred ecCceeeeccCCCceeeccCCCCCCC
Q 014475 320 RRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 320 ~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
|+|.+++++|.|.+|++|......++
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCccee
Confidence 99999999999999999998765443
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=246.52 Aligned_cols=274 Identities=24% Similarity=0.379 Sum_probs=243.6
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceee---------eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~ 109 (424)
+.|.. |+|||++|++++.| |.|.+||..+++... ...+.++|.|+.||.|..++|+|+.||.|++|.+
T Consensus 216 ~EcA~--FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 216 VECAR--FSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred hhhee--eCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 44444 99999999999998 999999998876431 1236789999999999999999999999999999
Q ss_pred cCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475 110 ASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (424)
Q Consensus 110 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (424)
++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+ .+.++.+.+|.+.|+...|.++|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-----------GK~LKEfrGHsSyvn~a~ft~dG- 360 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-----------GKCLKEFRGHSSYVNEATFTDDG- 360 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-----------chhHHHhcCccccccceEEcCCC-
Confidence 9999999996 8999999999999999999999999999999944 56788899999999999999999
Q ss_pred eeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 189 SATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 189 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
..+++++.||+|++|+..+.+++.++. .+.+|+.+-.-| +...++++...+++++.++... .+..
T Consensus 361 -~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrs 429 (508)
T KOG0275|consen 361 -HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRS 429 (508)
T ss_pred -CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEee
Confidence 899999999999999999999998887 446788888877 5678999999999999999873 4444
Q ss_pred ecc---cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 265 LSD---HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 265 ~~~---~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
+.. ..+...+...+| |.++.+.++|+.++.|.+.+|++-+++..|...|-.++-+|..+.||+-+.||.+++|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 432 345566677889 99999999999999999999999999999999999999999999999999999999996
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2e-36 Score=257.03 Aligned_cols=266 Identities=16% Similarity=0.263 Sum_probs=229.7
Q ss_pred EEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
.+|++++ .|+.|+|||+-. +++++++.+|.. +|..+. |+.+|..+++++-| +.|++||++++++........
T Consensus 228 hLlLS~g-mD~~vklW~vy~~~~~lrtf~gH~k---~Vrd~~--~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 228 HLLLSGG-MDGLVKLWNVYDDRRCLRTFKGHRK---PVRDAS--FNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred eEEEecC-CCceEEEEEEecCcceehhhhcchh---hhhhhh--ccccCCeeeeeecc-eeeeeeccccceEEEEEecCC
Confidence 4789999 999999999876 889988887664 556666 99999999999998 999999999999999988899
Q ss_pred CeeEEEECCCC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+.++||+.+....
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---- 376 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---- 376 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc----
Confidence 99999999988 8899999999999999999999999999999999999999999999999999999999965211
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce---eeeee---cCcceeEEEECCCCCEEE
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV---FPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~---~~~~i~~~~~~~~~~~l~ 234 (424)
.. .....+.....++..+|.+ ++++.-+.|+.+.++.+...-. .+.+. ..+....+.|||||.+|+
T Consensus 377 ----ik--~i~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 377 ----IK--NIADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred ----ch--hhcchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 11 1122334456678888988 8999999999999998653211 11222 346677889999999999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd 296 (424)
+|..||.+.+||.++. +.+..+++|..++..+.|+| ...+||++.||.|++||
T Consensus 449 SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999996 67888999999999999999 78999999999999997
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=268.15 Aligned_cols=282 Identities=20% Similarity=0.316 Sum_probs=248.0
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
..+..++ |+|...+++++-.+ |.|++||.+-+...-+ ..|.++|..++|+|++.++++|+.|-.|++|+..+.+++
T Consensus 10 sRvKgls--FHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 10 SRVKGLS--FHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccee--cCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 4455666 99999999999888 9999999987776544 458999999999999999999999999999999999999
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
.++.+|.+.|..+.|++.-.+++++|.|.+|+||+. ....++..+.+|...|.|..|+|.. ..++++
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw-----------qsr~~iavltGHnHYVMcAqFhptE--DlIVSa 153 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW-----------QSRKCIAVLTGHNHYVMCAQFHPTE--DLIVSA 153 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEec-----------cCCceEEEEecCceEEEeeccCCcc--ceEEEe
Confidence 999999999999999999999999999999999999 4567889999999999999999987 899999
Q ss_pred eCCCcEEEEecCCCc----------------------------eee-eee-cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 196 SEDRTCKVWSLLKGR----------------------------LLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 196 ~~d~~v~iwd~~~~~----------------------------~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
|-|.+|++||+..-+ .++ .+. |...|+-++|+|.-..+++|++|..|++|
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW 233 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW 233 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence 999999999985210 011 112 67789999999999999999999999999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY 324 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 324 (424)
.+...+ .-.+.+.++|.+.|.++-|+| .+++++.|+|++|++||+...+.+++|+...+.-+.++.+|..++
T Consensus 234 rmnetK-------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 234 RMNETK-------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred Eecccc-------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence 998754 245677889999999999999 999999999999999999999999999988889999999999988
Q ss_pred eeeccCCCceeeccCCCC
Q 014475 325 LNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 325 l~~~~~d~~i~iw~~~~~ 342 (424)
+++|- |+-+.++.++..
T Consensus 307 fAAgH-DsGm~VFkleRE 323 (1202)
T KOG0292|consen 307 FAAGH-DSGMIVFKLERE 323 (1202)
T ss_pred eeeec-CCceEEEEEccc
Confidence 87764 555666666533
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-36 Score=234.89 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=251.0
Q ss_pred CCCCCCCceEEecceee---cCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475 31 SCASPPHGLACVGQRFL---ASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 31 ~~~~~~~~v~~~~~~~~---~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 106 (424)
.+.+|.++|..++ |+ |+|-+|++++.| |.-.+-+=+++... ....|.+.|.....+.+....|+++.|-+-++
T Consensus 9 ~c~ghtrpvvdl~--~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 9 TCHGHTRPVVDLA--FSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred EEcCCCcceeEEe--ccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3456777888887 66 688899999997 88777776666644 45679999999999999999999999999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
||.-+|..+.++. |..-|..++|+.|.++|++|+.+..+++||++. ...+...+.+|.+.|..+.|+..
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~----------p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR----------PKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC----------CCCCchhhcCCCCcceeEEEecc
Confidence 9999999999987 888999999999999999999999999999965 23345678899999999999988
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
. +.+++++.|++||+||.+++..++.+..+.+++++.++++|+++.++ ..+.|.+||..+- .++....
T Consensus 155 D--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf---------~~lKs~k 222 (334)
T KOG0278|consen 155 D--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF---------GLLKSYK 222 (334)
T ss_pred C--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc---------cceeecc
Confidence 7 88899999999999999999999999999999999999999977665 4567999999885 3333332
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
-...|.+...+| ...+++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|..-++||.||+|++|.....+.
T Consensus 223 -~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 223 -MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 456789999999 889999999999999999999999986 89999999999999999999999999999999886655
Q ss_pred C
Q 014475 345 P 345 (424)
Q Consensus 345 ~ 345 (424)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 4
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-35 Score=230.12 Aligned_cols=259 Identities=17% Similarity=0.241 Sum_probs=221.9
Q ss_pred eeEEEEECCCCc-ee--eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccC-cceeeeeccccCCeEEEEEcc-CC
Q 014475 61 GSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYRAVTCLVFSE-DG 134 (424)
Q Consensus 61 g~i~vwd~~~~~-~~--~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~-~~ 134 (424)
|.+.|-+...+. +. ....-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|..+|.++.|++ +.
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r 117 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR 117 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence 899999996333 22 22345789999999995 56788889999999999743 367888999999999999998 56
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 214 (424)
+.+++++.|++|++|+. ..+..+.++.+|...|...+|+|... +.+++++.|+++++||++..-....
T Consensus 118 ~~~ltsSWD~TiKLW~~-----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDP-----------NRPNSVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eeEEeeccCCceEeecC-----------CCCcceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeE
Confidence 67888899999999999 44556788999999999999999865 8999999999999999986433333
Q ss_pred ee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCC
Q 014475 215 IV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDG 290 (424)
Q Consensus 215 ~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg 290 (424)
+. |...+.++.|+. +.+.+++|+.|+.|+.||+++-. .++..+.+|.-.|..++|+| ...|++++.|-
T Consensus 186 i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 55 788999999998 67889999999999999999976 66888999999999999999 88999999999
Q ss_pred cEEEEeCCCC-cEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccC
Q 014475 291 MVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 291 ~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~ 339 (424)
+++|||...+ ..+.+...|..-|..+.|++ ++.++|+.+.|+.+++|+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999854 56677778999999999997 5679999999999999985
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=266.63 Aligned_cols=254 Identities=24% Similarity=0.412 Sum_probs=227.1
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 156 (424)
+...|.++.|+++|+++++++.++.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|++||+..
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--- 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--- 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC---
Confidence 46789999999999999999999999999998777 7777889999999999999999999999999999999933
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (424)
....++++.+|...|++++|+|.+ +.+++|+.|++|++||++++++...+. |...|++++|+++++++++
T Consensus 235 -------~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 235 -------DGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred -------CCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 345678899999999999999999 899999999999999999999999998 8899999999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC--eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (424)
++.|+.|++||+.++... +...+.++... ++++.|+| +.+++++..|+.+++||+..+..+..+.+|...
T Consensus 306 ~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred cCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 999999999999997411 34556665555 99999999 999999999999999999999999999999874
Q ss_pred ---eeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcccc
Q 014475 313 ---VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY 351 (424)
Q Consensus 313 ---v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 351 (424)
+.+...++.+.++++|+.|+.|.+|+..+....+.+..+
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 444455789999999999999999999987666555555
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=243.30 Aligned_cols=269 Identities=21% Similarity=0.343 Sum_probs=230.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~ 82 (424)
.+++|. .|.+|+|||..+-.+++.+.+|. +.|.|+. | +.+.+++|++| .+|++||++++++. ....|.+.
T Consensus 209 kiVSGl-rDnTikiWD~n~~~c~~~L~GHt---GSVLCLq--y--d~rviisGSSD-sTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 209 KIVSGL-RDNTIKIWDKNSLECLKILTGHT---GSVLCLQ--Y--DERVIVSGSSD-STVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred hhhccc-ccCceEEeccccHHHHHhhhcCC---CcEEeee--c--cceEEEecCCC-ceEEEEeccCCchhhHHhhhcce
Confidence 478899 99999999999988888777655 6688877 4 56688888887 99999999999876 44668899
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
|..+.|+ ..++++++.|.++.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st------ 349 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST------ 349 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc------
Confidence 9999997 5699999999999999998764 345678999999999997 66999999999999999955
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
..++.++.+|+..|.|+.+. + +++++|+.|.+|++||+..|.+++.++ |..-|.++.| +.+.+++|..
T Consensus 350 -----~efvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY 418 (499)
T KOG0281|consen 350 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 418 (499)
T ss_pred -----eeeehhhhcccccceehhcc--C--eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence 55788899999999888763 3 899999999999999999999999998 8899999999 5778999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
||+|++||+........+...-++..+..|.+.|..+.|. ...+++++.|.+|.|||..++.+-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999887655444445677788899999999997 567888899999999998876543
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-34 Score=243.21 Aligned_cols=287 Identities=22% Similarity=0.326 Sum_probs=246.5
Q ss_pred CCCceEEecceeecCCCc-cccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 35 PPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
..+.|.+++ |+|...+ +|++++ -.+.+|+..+..... .......|.++.|..||++||+|+..|.|+|||..+.
T Consensus 25 e~~~vssl~--fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLC--FSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEe--cCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 346788888 9997665 444444 789999987766543 3446789999999999999999999999999998877
Q ss_pred ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 113 RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
..++.+.+|..++..+.|+| ++..+++|+.|+.+++||+.+. .....+.+|+..|.+.+|+|..+ ..
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-----------~v~~~l~~htDYVR~g~~~~~~~-hi 168 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-----------YVQAELSGHTDYVRCGDISPAND-HI 168 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-----------EEEEEecCCcceeEeeccccCCC-eE
Confidence 78889999999999999999 5567888999999999999662 23557889999999999999864 68
Q ss_pred EEEEeCCCcEEEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 192 IVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++|+.||.|++||++.. ..+..+.|..+|..+.+-|.|..+++++. ..+++||+-++. +.+.....|..
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~K 239 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNK 239 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccc
Confidence 999999999999999987 78888999999999999999999988764 479999999775 56666667999
Q ss_pred CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
.|+|+.+.. +..|++|+-|+.|++||+.+.+.+..+. ..+||-+++.+|+++.++.|..||.+.+-+....+...+
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSK 316 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCCCc
Confidence 999999988 8999999999999999999999999987 679999999999999999999999988876655544433
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-33 Score=246.02 Aligned_cols=265 Identities=29% Similarity=0.514 Sum_probs=230.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~ 81 (424)
.+|++++ .||.|++||+.+++....+..+. ..+..+. |.|+++.+++++.+ |.|++|++.+.+.. ....|..
T Consensus 22 ~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 22 KLLATGS-GDGTIKVWDLETGELLRTLKGHT---GPVRDVA--ASADGTYLASGSSD-KTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred CEEEEee-cCcEEEEEEeeCCCcEEEEecCC---cceeEEE--ECCCCCEEEEEcCC-CeEEEEEcCcccceEEEeccCC
Confidence 4688888 89999999999988777776554 4556677 99999999999987 99999999975443 3345677
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.+.++.|+|+++++++++.+|.|.+||+.+++....+..|...+.++.|+|++.++++++.||.|++||+++
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------- 166 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-------- 166 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--------
Confidence 999999999999999988899999999998988888888999999999999988888888899999999954
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-ecCcceeEEEECCCCCEEEEEeCCC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
......+..|...+.++.|++++ +.+++++.++.+++||+++++.+..+ .+...+.+++|+|++.++++++.+|
T Consensus 167 ---~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 167 ---GKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred ---cccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 23445566888899999999998 78899999999999999998888888 5788999999999988888888899
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
.+++|++... .....+..|...|.+++|+| +.++++++.||.|++|+
T Consensus 242 ~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999875 45666778999999999999 89999999999999996
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=246.86 Aligned_cols=276 Identities=18% Similarity=0.268 Sum_probs=238.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~ 82 (424)
.+.++- -+|.|.|||.++...++.+.-...+++ +.. |.+--+++++|+.| ..|+|++..+.+.. ....|.+-
T Consensus 27 w~la~L-ynG~V~IWnyetqtmVksfeV~~~PvR---a~k--fiaRknWiv~GsDD-~~IrVfnynt~ekV~~FeAH~Dy 99 (794)
T KOG0276|consen 27 WILAAL-YNGDVQIWNYETQTMVKSFEVSEVPVR---AAK--FIARKNWIVTGSDD-MQIRVFNYNTGEKVKTFEAHSDY 99 (794)
T ss_pred eEEEee-ecCeeEEEecccceeeeeeeecccchh---hhe--eeeccceEEEecCC-ceEEEEecccceeeEEeeccccc
Confidence 345555 689999999999999999987665544 444 77888899998887 99999999988765 44669999
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
|++++.+|...++++++.|-.|++||.+.+ .+.+++.+|...|.+++|.| |.+.+++++-|++|++|.+
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl--------- 170 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL--------- 170 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc---------
Confidence 999999999999999999999999999866 77889999999999999999 7789999999999999999
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCC
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (424)
....+..++++|...|+++.+-+.++..+|++|+.|.++++||..+..+++++. |...|..++|+|.=.++++|+.|
T Consensus 171 --gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 171 --GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred --CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence 456677889999999999999998887899999999999999999999999998 99999999999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
|+++||+..+- +....+.-.-..+.|++-.+ ++.++.|.++|.| +..+-..++..++.
T Consensus 249 GTvriWhs~Ty---------~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~vsMd 307 (794)
T KOG0276|consen 249 GTVRIWNSKTY---------KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAVSMD 307 (794)
T ss_pred ccEEEecCcce---------ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCceeec
Confidence 99999998885 44455555668899999888 7778888877765 44555555555554
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-34 Score=219.57 Aligned_cols=249 Identities=18% Similarity=0.277 Sum_probs=216.6
Q ss_pred eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
......++++|.++.|+-||+|.++++.|.+|++|++..+.+++++.+|..+|..++.+.|...|++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeeee-cCcceeEEEECCC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA 229 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~ 229 (424)
+ .+..+.+.+|...|+.+.|+.+. ..+++|+.|.++++||.++. ++++.+. ....|.++.. .
T Consensus 90 T-----------Gkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~ 154 (307)
T KOG0316|consen 90 T-----------GKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--A 154 (307)
T ss_pred c-----------CeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--c
Confidence 6 45678899999999999999888 89999999999999999864 4566555 5677888877 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
+..+++|+.||+++.||++.+. ..... ...+|++++|++ ++..+.++.|+++++.|-.+|++++.+++
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~---------l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGT---------LSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred ccEEEeeccCCcEEEEEeecce---------eehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 6679999999999999999984 22222 457899999999 99999999999999999999999999999
Q ss_pred cCCCeeE--EEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 309 AKGPVNN--ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 309 ~~~~v~~--l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
|.+.-.. .+++.....+++|++||.+.+||+........
T Consensus 224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 9875444 45666677899999999999999987655433
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-34 Score=237.47 Aligned_cols=269 Identities=19% Similarity=0.337 Sum_probs=225.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~ 80 (424)
.+|||++ +|.+..+|++.....++-.+...+|..+|..+. |+||.+++++++.+ ..+.+||+.++....... +.
T Consensus 237 kyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdryLlaCg~~-e~~~lwDv~tgd~~~~y~~~~~ 312 (519)
T KOG0293|consen 237 KYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRYLLACGFD-EVLSLWDVDTGDLRHLYPSGLG 312 (519)
T ss_pred eeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCeEEecCch-HheeeccCCcchhhhhcccCcC
Confidence 4899999 999999999887766555556667778899988 99999999999998 889999999998765544 45
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
..+.+++|.|||..+++|+.|+++..||++ |......++- ...|.+++..+||+++++.+.|..|++++.++...
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--- 388 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--- 388 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---
Confidence 889999999999999999999999999985 4445555443 35699999999999999999999999999865211
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC--cceeEEEECC-CCCEEEE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP--SVIDAIALDP-AEHVFYA 235 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~--~~i~~~~~~~-~~~~l~~ 235 (424)
..+.....+|++++.+.++ +++++.-.+..+++||+...+.++.+. |. .-+-.-||-- +..++++
T Consensus 389 ---------r~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 389 ---------RGLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred ---------hccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 1133356789999999988 899999999999999999887777765 32 2344445554 5689999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~ 299 (424)
|+.|+.|+||+..++ +++..+.+|...|++++|+| ..++|+|++||+||||....
T Consensus 458 GSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999997 78999999999999999999 78999999999999998764
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-34 Score=223.35 Aligned_cols=288 Identities=16% Similarity=0.217 Sum_probs=238.1
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
.+|.++++.+. |..+|.+|.+++.| .+..||-..+++.. ....|.+.|+|++.+.+.+++++|+.|.++++||+++
T Consensus 7 ~GHERplTqiK--yN~eGDLlFscaKD-~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 7 QGHERPLTQIK--YNREGDLLFSCAKD-STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccCccccceEE--ecCCCcEEEEecCC-CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 34667888888 99999999999998 99999988666554 5678999999999999999999999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeC-----CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
|+++..++ ...+|..+.|+++|++++.... .+.|.++|++..... .....+...+..+.+.++.+.|.|.
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh----hcccCceEEecCCccceeeeeeccc
Confidence 99999987 5678999999999998776654 467999999764321 1233456667788899999999999
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
+ +.|++|.+||.|.+||+++++....-. |...|+.++++|+..++++++.|.+-++||.++- ..+.+
T Consensus 159 ~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---------~v~Kt 227 (327)
T KOG0643|consen 159 G--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---------EVLKT 227 (327)
T ss_pred C--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---------eeEEE
Confidence 8 899999999999999999986554443 8889999999999999999999999999999985 44445
Q ss_pred ecccCcCeEEEEecC-CCEEEEeC-CCCc-E------------EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc
Q 014475 265 LSDHSKAVTCLAYST-GDLLISGS-EDGM-V------------RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~-~~~l~t~~-~dg~-i------------~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
+. ...||++.+++| .+.++.|+ .+.. | ++|++-..+.+..+++|-+||++++|+|+|+..++|+
T Consensus 228 y~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 228 YT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred ee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 43 568999999999 66555554 3321 2 2333333456778889999999999999999999999
Q ss_pred CCCceeeccCC
Q 014475 330 FSNPHTSSRRH 340 (424)
Q Consensus 330 ~d~~i~iw~~~ 340 (424)
.||.|++....
T Consensus 307 EDG~VR~h~Fd 317 (327)
T KOG0643|consen 307 EDGYVRLHHFD 317 (327)
T ss_pred CCceEEEEEec
Confidence 99999988655
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-34 Score=258.07 Aligned_cols=256 Identities=17% Similarity=0.288 Sum_probs=229.1
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|..++|+|...+++++-..|.|++||.+-+.++..+..|.++|..+.|+|.+.++++|+.|..|++|+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY-------- 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY-------- 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec--------
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
....++.++.+|-..|..+.|++.- .+++++|.|.+|+||+..+++++..+. |...|.|.+|+|....+++++-
T Consensus 81 ---k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 81 ---KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred ---ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence 4467888999999999999999988 899999999999999999999999998 8999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCc--------------------CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 239 DGSIYIAALNAESPSTSSY--------------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
|-+|++||+..-....... ..-....+.+|...|+-++|+| -.+|++|++|..|++|.+
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 9999999986532211111 1122345789999999999999 999999999999999998
Q ss_pred CCCc--EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 298 ITHN--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 298 ~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
..-+ .+.+..+|.++|.++.|+|....+++.|.|++|++||+...+..+.+
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 7654 45678899999999999999999999999999999999877665444
No 59
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=247.30 Aligned_cols=347 Identities=17% Similarity=0.252 Sum_probs=283.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-C
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-E 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~ 81 (424)
+-++.|+ ++|.+.|||+++++.+.+++.+. .+|+++. -+|.-..+|+|..+ |+|.++++..++......+. +
T Consensus 173 NKIvvGs-~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ie--qsPaLDVVaiG~~~-G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 173 NKIVVGS-SQGRLQLWNVRTGKVVYTFQEFF---SRITAIE--QSPALDVVAIGLEN-GTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred eeEEEee-cCCcEEEEEeccCcEEEEecccc---cceeEec--cCCcceEEEEeccC-ceEEEEEcccCcEEEEEEcccc
Confidence 3467788 89999999999999999998765 7788888 88988999999998 99999999999998888775 9
Q ss_pred CeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
+|+.++|..||+. +|+|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|..+++|=.+++.
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d---- 321 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD---- 321 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC----
Confidence 9999999999875 5566667999999999988877765 788999999999999999999999999998665432
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------------------------------
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK------------------------------- 208 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~------------------------------- 208 (424)
.....++.-.+|..+..++.|.... +..+.+++.|++++.+++..
T Consensus 322 ---g~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 322 ---GVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred ---CcchheeeccCCCCCchheeeeccC-cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 3345566678899999999987432 17788888888777776521
Q ss_pred ----------------------------------Cce-eeeeec------CcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475 209 ----------------------------------GRL-LRNIVF------PSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 209 ----------------------------------~~~-~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (424)
... ...+.+ ...+++++.++.|++.+.|+..|.|-+|++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 100 000011 136788999999999999999999999999
Q ss_pred CCCCCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE------------------
Q 014475 248 NAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM------------------ 305 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~------------------ 305 (424)
+.+. ....+ ..|..+|+.++... ++.+++++.+|.+++||.....++..
T Consensus 478 QSGi---------~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 478 QSGI---------HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred ccCe---------eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence 9974 22333 57999999999998 99999999999999999876553332
Q ss_pred -----------------------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC--------------CCCc
Q 014475 306 -----------------------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL--------------PPPL 348 (424)
Q Consensus 306 -----------------------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~--------------~~~~ 348 (424)
|.+|.+.|++++|||||++|++++.|++|++||+.++.+ +.|.
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN 628 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence 338999999999999999999999999999999998876 4667
Q ss_pred ccccccccccccceeEeecCcccCC
Q 014475 349 DKYVTSADEDVDKKGVIRLPSLYNA 373 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (424)
..+++....+.....++.+.+++..
T Consensus 629 gD~LAT~Hvd~~gIylWsNkslF~~ 653 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKSLFKS 653 (910)
T ss_pred CCEEEEEEecCceEEEEEchhHhee
Confidence 7888888888777777777776643
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-32 Score=271.44 Aligned_cols=260 Identities=20% Similarity=0.281 Sum_probs=220.3
Q ss_pred eeEEEEECCCCceeee------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----c----eeeeeccccCCeE
Q 014475 61 GSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----R----LLKKWHAHYRAVT 126 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~i~ 126 (424)
|.+++|+......... ..|.+.|.+++|+|+++++|+|+.|+.|+||++.+. . ....+. +...+.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 7788888876543321 237889999999999999999999999999997542 1 122233 356799
Q ss_pred EEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEE
Q 014475 127 CLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVW 204 (424)
Q Consensus 127 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iw 204 (424)
+++|++ ++.+|++++.||.|++||+.+ ...+..+.+|...|++++|++ ++ .+|++|+.|++|++|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~-----------~~~~~~~~~H~~~V~~l~~~p~~~--~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR-----------SQLVTEMKEHEKRVWSIDYSSADP--TLLASGSDDGSVKLW 603 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEecCCCCCEEEEEEcCCCC--CEEEEEcCCCEEEEE
Confidence 999987 578999999999999999954 345677889999999999997 45 799999999999999
Q ss_pred ecCCCceeeeeecCcceeEEEEC-CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475 205 SLLKGRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (424)
Q Consensus 205 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 283 (424)
|++++..+..+.....+.++.|+ +++.++++|+.||.|++||++... ..+..+.+|...|.++.|.++.+|
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDSSTL 675 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCCCEE
Confidence 99999988888877789999995 579999999999999999998753 345567789999999999888899
Q ss_pred EEeCCCCcEEEEeCCC------CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 284 ISGSEDGMVRVWDPIT------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 284 ~t~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
++++.|++|++||++. ..++..+.+|...+..++|+|++.+|++|+.|+.|++|+....
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999974 3678899999999999999999999999999999999997644
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=256.64 Aligned_cols=250 Identities=18% Similarity=0.210 Sum_probs=205.5
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--------------------------------c-------------
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------------------------------G------------- 112 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--------------------------------~------------- 112 (424)
.|.+.|.++.||+||+|||+||.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5889999999999999999999999999998865 0
Q ss_pred ---------------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475 113 ---------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (424)
Q Consensus 113 ---------------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (424)
+++..+.+|.+.|..+.|+. .++|++++.|.+|++|++. ...++..| .|..-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~-----------~~~CL~~F-~Hndf 411 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPG-----------RKECLKVF-SHNDF 411 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCC-----------CcceeeEE-ecCCe
Confidence 12233568999999999996 4589999999999999994 34556655 49999
Q ss_pred eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
|+|++|+|..+ ++|++|+-||.|+||++...+...-.....-|+++++.|+|+..++|+.+|.+++|+...........
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999876 89999999999999999988887777788999999999999999999999999999998864321110
Q ss_pred CceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC--CeeEEEEEecCceeeeccCCCc
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
....-..-..|. .|+.+.|.| ...+++.+.|..|||+|.++..++..|+++.. .-....|+.||++|+++++|..
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 000000011133 899999999 44577778899999999999999999997653 4467789999999999999999
Q ss_pred eeeccCCCC
Q 014475 334 HTSSRRHGS 342 (424)
Q Consensus 334 i~iw~~~~~ 342 (424)
|++|+....
T Consensus 570 VYiW~~~~~ 578 (712)
T KOG0283|consen 570 VYIWKNDSF 578 (712)
T ss_pred EEEEeCCCC
Confidence 999998543
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-33 Score=244.23 Aligned_cols=270 Identities=19% Similarity=0.257 Sum_probs=230.3
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccC
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYR 123 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~ 123 (424)
|+ ..+.++++.. ..|++|+..++..... ..+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |..
T Consensus 185 Ws-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 185 WS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred cc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence 66 3445666654 5899999998885544 33489999999999999999999999999999999999999988 999
Q ss_pred CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
.|-+++|. +..+.+|+.|+.|..+|++.... ....+.+|...|..+.|++++ .++++|+.|+.+.|
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~----------~~~~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH----------VVSTLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFI 327 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchh----------hhhhhhcccceeeeeEECCCC--CeeccCCCccceEe
Confidence 99999998 66899999999999999976321 122478899999999999999 99999999999999
Q ss_pred EecCCCceeeeee-cCcceeEEEECC-CCCEEEEE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 204 WSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
||....+++..+. |...|.+++|+| ...+||+| +.|+.|++||..++. .+... .-...|+.+.|++
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~v-dtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSV-DTGSQVCSLIWSK 397 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eeccc-ccCCceeeEEEcC
Confidence 9997777777666 999999999999 66788885 479999999999874 33333 3457899999999
Q ss_pred -CCEEEE-eC-CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 280 -GDLLIS-GS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 280 -~~~l~t-~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
.+-|++ -+ .++.|.||+..+.+++..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 544444 33 5778999999999999999999999999999999999999999999999998865
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=234.24 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=240.9
Q ss_pred CCCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc
Q 014475 32 CASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~ 109 (424)
..+|.++|.|++ =+|.. ..+++|+.| |.|++||+...+.... ..|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 62 L~gHrdGV~~la--khp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 62 LDGHRDGVSCLA--KHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccccccchhh--cCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 357889999999 88877 678888887 9999999998776544 56889999999986 66888899999999997
Q ss_pred cCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
+- ..+.++.+ ...+..+.-+..+..++|++. .|.|||.+ ...++..+......|.++.|+|...
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-----------R~~Pv~smswG~Dti~svkfNpvET- 200 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-----------RDNPVSSMSWGADSISSVKFNPVET- 200 (433)
T ss_pred cC-Ccceeeec-cccccccccccccccccccCc--eeeecccc-----------cCCccceeecCCCceeEEecCCCcc-
Confidence 54 45555543 355677777767778999987 49999994 3556777788888999999999875
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
..|+++..|+.|.+||++++.+++.+......+.++|+|.+-.|.+++.|..++.||++.-. .++....+|.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhv 272 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHV 272 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc--------ccchhhcccc
Confidence 78888889999999999999999999999999999999988889999999999999999976 7788899999
Q ss_pred cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475 270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
..|.++.|+| |.-+++||.|.+|+||.++.+.--.... .....|.++.||.|.+|+++||+|+.|++|.....+...
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999 9999999999999999998765433321 122479999999999999999999999999988554433
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.2e-32 Score=225.89 Aligned_cols=268 Identities=21% Similarity=0.323 Sum_probs=221.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----eee
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS 77 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----~~~ 77 (424)
-.+.||+ .||.+++||.. |+..+.+.+|.++...+..+. -.+....+++++.| .++++|.++.++.. ...
T Consensus 116 ~~Iltgs-YDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~--~n~~~~~fvsas~D-qtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 116 KWILTGS-YDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVI--KNSSSCLFVSASMD-QTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred ceEEEee-cCCeeEEEecC-CceEEEEecCCcceeeeEEEe--cCCccceEEEecCC-ceEEEEEecCchhhhhHHhHhc
Confidence 3578999 99999999965 999999999887766666544 34444568899998 99999999877643 224
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-------------------------cceeeeeccccCCeEEEEEcc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-------------------------GRLLKKWHAHYRAVTCLVFSE 132 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-------------------------~~~~~~~~~~~~~i~~~~~~~ 132 (424)
+|...|.+++..++|..+++|+.|.+|.||+.++ +.++..+.+|..+|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 7999999999999999999999999999999321 134556789999999999997
Q ss_pred CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-
Q 014475 133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL- 211 (424)
Q Consensus 133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~- 211 (424)
...+.+++.|.+|+.||++++.. ...+. ....++++..++.. .+|++|+.|..+++||.+++.-
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~-----------~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGL-----------KSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred -CCceEeecccceEEEEEeecccc-----------eeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCc
Confidence 66899999999999999977432 22222 34578899999977 8999999999999999997642
Q ss_pred --eeee-ecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeC
Q 014475 212 --LRNI-VFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287 (424)
Q Consensus 212 --~~~~-~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~ 287 (424)
...+ .|..-|.++.|+|. ...|++|+.|+++++||++... .++..+.+|...|.++.|+.+..+++|+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~~IvSGG 407 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGGLIVSGG 407 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCceEEecc
Confidence 2223 38899999999995 5668889999999999999974 5788999999999999999899999999
Q ss_pred CCCcEEEEeCC
Q 014475 288 EDGMVRVWDPI 298 (424)
Q Consensus 288 ~dg~i~iwd~~ 298 (424)
.|.+|+|+.-.
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999998743
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.9e-34 Score=229.71 Aligned_cols=268 Identities=22% Similarity=0.362 Sum_probs=235.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCC-----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK- 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~- 76 (424)
.+|++|+ .||-|.|||..+|+..+.++-. -.+..+|.|+. |+.|...+|+++.| |.|++|.+.++.+..+
T Consensus 226 qyLvsgS-vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsEMlAsGsqD-GkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 226 QYLVSGS-VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSEMLASGSQD-GKIKVWRIETGQCLRRF 301 (508)
T ss_pred ceEeecc-ccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHHHhhccCcC-CcEEEEEEecchHHHHh
Confidence 5899999 9999999999999988766432 23567899999 99999999999998 9999999999988755
Q ss_pred -ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 77 -SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 77 -~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
..|...|+|+.||.|+..+++++.|.++++.-+.+|++++.+++|.+.|+...|.++|.++++++.||+|++|+..+..
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999997633
Q ss_pred chhcccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECCC
Q 014475 156 EECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA 229 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~ 229 (424)
++.+++ +...+|+++..-|.+. ..++++...+++.+-++ .|+.++.+. ..+..-+.+.+|.
T Consensus 382 -----------C~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 382 -----------CLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred -----------hhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 223332 3566788888888765 78899999999999998 477788876 3456778889999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
|.++++.+.|+.++.|...++ ..-..+..|+..+..++-+| .+.+++-++||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecC---------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999987 55667888999999999999 99999999999999995
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=234.75 Aligned_cols=276 Identities=19% Similarity=0.281 Sum_probs=233.7
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
|...+..+. |.++...|+++|.| ..|++|+....+.... .+..++|+.+.|.++++++++++.|+.+++|++.+
T Consensus 174 h~gev~~v~--~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 174 HEGEVHDVE--FLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred cccccceeE--EccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 445556666 99999999999998 9999999987764332 34567899999999999999999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
.+...++.+|.+.|+++.|......+++|+.|.+|++||+.. ..+.++.. ....+.+|+.+ . ..
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-----------~~C~kt~l-~~S~cnDI~~~--~--~~ 314 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-----------AYCSKTVL-PGSQCNDIVCS--I--SD 314 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-----------hheecccc-ccccccceEec--c--ee
Confidence 999999999999999999987666699999999999999954 22333222 23345556655 2 57
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc----
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD---- 267 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---- 267 (424)
+++|..|++|++||+++..+.......+.|+++..++++..+++.+.|..+.+.|+++.. ....+.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k 385 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFK 385 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccccc---------EEEEeeccccc
Confidence 899999999999999999999999988899999999999999999999999999999964 2233322
Q ss_pred cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC--eeEEEEEecCceeeeccCCCceeecc
Q 014475 268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 268 ~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
.....+.+.|+| +.|+++|+.||.|+||++.++++...+.....+ |++++|+|.|..|++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 123488899999 999999999999999999999999988866554 99999999999999999999999994
No 67
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=245.16 Aligned_cols=313 Identities=16% Similarity=0.180 Sum_probs=248.9
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec------C-----CCccccCCCCceeEEEEECCCCc---eee-
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA------S-----SQLREQPSASSGSILYWSWSKPQ---VEV- 75 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~-----~~~l~~~~~~~g~i~vwd~~~~~---~~~- 75 (424)
.|..+.|||++.-..+......-.|...|..+. -.| . ...+++++.| ++|++|+++... ...
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve--~~p~nv~~~~~aclp~~cF~TCSsD-~TIRlW~l~~ctnn~vyrR 420 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVE--NLPCNVHSPTAACLPRGCFTTCSSD-GTIRLWDLAFCTNNQVYRR 420 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeec--cccccccCcccccCCccceeEecCC-CcEEEeecccccccceeec
Confidence 689999999987554433322233445555444 222 1 1236677776 999999997521 100
Q ss_pred --------e--------------------------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc
Q 014475 76 --------K--------------------------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121 (424)
Q Consensus 76 --------~--------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 121 (424)
+ ......+.+++.+|+|++||+|..-|.++||++.+.+....+..|
T Consensus 421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0 001346899999999999999999999999999999999999999
Q ss_pred cCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 122 YRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 122 ~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
..+|.|+.|+. ..++|++++.|..|.+||+.. ...++.++.+|...|+++.|...+-+..+++++.|
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----------ny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEeccc----------ccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 99999999985 457899999999999999954 45567889999999999999988877889999999
Q ss_pred CcEEEEecCCCceeeeee------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 199 RTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
+.|.+--.+.......+. ....+..++..|..+++++++.|..|+||++..++.. +..+.-.+|++..
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDL 644 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee------eeecccccCCCce
Confidence 887654333211111121 3467899999999999999999999999999998532 2222334577888
Q ss_pred EEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 273 ~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
..+...| +.|+++...|.++.++|..+|+++.++.+|...|+.+.|.+|-+.|++.+.||.|.+|.+...
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 8999999 999999999999999999999999999999999999999999999999999999999998753
No 68
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.5e-32 Score=212.07 Aligned_cols=271 Identities=15% Similarity=0.218 Sum_probs=231.9
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~ 109 (424)
+|...+.+++ |..+|..|++++.+ +++.+|+++...... ...|.+.|-.++|+| +...+++++.|.+|++||.
T Consensus 18 ~~~~~v~Sv~--wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 18 GHVQKVHSVA--WNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhcceEEE--EcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 4556677888 99999999999998 999999998775432 345788999999988 6788999999999999999
Q ss_pred cCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
+++++........+. .-+.|+|+|++++.+..|..|...|.++.. ... -......+..++|+.++
T Consensus 95 r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~-----------~~~-~~~~~~e~ne~~w~~~n-- 159 (313)
T KOG1407|consen 95 RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYK-----------IVN-EEQFKFEVNEISWNNSN-- 159 (313)
T ss_pred ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccc-----------eee-hhcccceeeeeeecCCC--
Confidence 999999888754444 457899999999999999999999996621 121 12234566778888665
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (424)
++++....-|+|.|.....-+++..++ |+....|+.|+|+|++|++|+.|..+.+||++.- -+...+..+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRl 230 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRL 230 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccc
Confidence 666666667999999999999999998 9999999999999999999999999999999885 567788889
Q ss_pred CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
.-+|..+.|+. |++||+|++|..|-|=++++|..+..++ +.++...++|+|...+||-+..|.
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 99999999999 9999999999999999999999999998 789999999999999998877654
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.3e-32 Score=255.71 Aligned_cols=283 Identities=19% Similarity=0.274 Sum_probs=239.4
Q ss_pred CceEEecceeecCCCccccCC--CCceeEEEEECCCC-------------ceeeeecCCCCeeEEEECCCCCEEEEecCC
Q 014475 37 HGLACVGQRFLASSQLREQPS--ASSGSILYWSWSKP-------------QVEVKSLPAEPIKPIAANSHGTYIAGGGQS 101 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~--~~~g~i~vwd~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 101 (424)
..|.+++ .+|+|..++++| .| |.+++|+.+.- .......|.+.|+|+.|+|||++||+|++|
T Consensus 14 ~~IfSId--v~pdg~~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 14 KSIFSID--VHPDGVKFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred eeEEEEE--ecCCceeEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4478888 999999999999 77 88889987521 112334588999999999999999999999
Q ss_pred CcEEEEEccC------------------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 102 GDIYMWEVAS------------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 102 g~v~iwd~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
+.|.||+... .+....+.+|...|..++|+|++.+|++++.|++|.+||..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t---------- 160 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT---------- 160 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc----------
Confidence 9999999872 135667889999999999999999999999999999999965
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-------cCcceeEEEECCCCCEEEEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 236 (424)
...+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+....+.+. .......+.|+|||.+|++.
T Consensus 161 -F~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 161 -FELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred -ceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 46788899999999999999999 999999999999999987766666665 23457889999999999986
Q ss_pred eC----CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC------CC------------EEEEeCCCCcEEE
Q 014475 237 SR----DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST------GD------------LLISGSEDGMVRV 294 (424)
Q Consensus 237 ~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~------------~l~t~~~dg~i~i 294 (424)
.. -..+.|.+-.+ ++.-..+.+|.+++.++.|+| .. .+|+|+.|++|.|
T Consensus 238 nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred hhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 42 23677777755 466778899999999999987 12 6889999999999
Q ss_pred EeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 295 WDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 295 wd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
|.....+++..+. ....+|..++|+|||..|.++|.||+|.+......++
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 9998888877654 3457999999999999999999999999999886554
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=216.75 Aligned_cols=239 Identities=23% Similarity=0.365 Sum_probs=211.6
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc--EEEEeeCCCcEEEEeCCccc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~ 155 (424)
.|.+++++++.+ +.++|+|+.|-+|+|||+++...+..+-.|.+.|+++.|.++-. +|++|+.||.|.+|+.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~---- 114 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV---- 114 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc----
Confidence 478899999995 89999999999999999999999999999999999999998654 8999999999999999
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (424)
.....+..+++|.+.|+.++++|.+ ++.++.+.|+.+++||+-+|+.-.........+.+.|+|.|.++++
T Consensus 115 -------~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 -------GSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred -------CCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 5678899999999999999999999 8999999999999999999998887777777777999999999998
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (424)
+..+ .|-+|.+.+... ...+ .....+.++.|..+..|++|++|+.|++||..+..+...+.+|...|.+
T Consensus 186 ~~~~-~i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASV---------FREI-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD 254 (362)
T ss_pred Eecc-EEEEEecccHhH---------hhhh-hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence 8876 488999988531 2222 2235577888777899999999999999999999999999999999999
Q ss_pred EEEE--ecCceeeeccCCCceeeccCCCC
Q 014475 316 ILVV--RRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 316 l~~s--~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+.+- |++.+|+++|.||.|++||++..
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9854 57889999999999999999866
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-31 Score=210.71 Aligned_cols=278 Identities=18% Similarity=0.243 Sum_probs=233.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.+|.+++ +|.+..||-..+|+.+-++.+|. ..|.|++ ..-+.+.+++++.| .++++||+++++.........+
T Consensus 23 DLlFsca-KD~~~~vw~s~nGerlGty~GHt---GavW~~D--id~~s~~liTGSAD-~t~kLWDv~tGk~la~~k~~~~ 95 (327)
T KOG0643|consen 23 DLLFSCA-KDSTPTVWYSLNGERLGTYDGHT---GAVWCCD--IDWDSKHLITGSAD-QTAKLWDVETGKQLATWKTNSP 95 (327)
T ss_pred cEEEEec-CCCCceEEEecCCceeeeecCCC---ceEEEEE--ecCCcceeeecccc-ceeEEEEcCCCcEEEEeecCCe
Confidence 4788999 99999999999999999998765 6799999 88899999999998 9999999999999999889999
Q ss_pred eeEEEECCCCCEEEEecC-----CCcEEEEEcc-------CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 83 IKPIAANSHGTYIAGGGQ-----SGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
|..+.|+++|++++.... .+.|.++|++ +.++...+..+.+.++.+-|.|-+++|++|..||.|..||
T Consensus 96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d 175 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD 175 (327)
T ss_pred eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence 999999999998887643 4669999998 3456777888889999999999999999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
.+++ ...+.....|...|+++.++++. .++++++.|.+-++||.++-+.++++....++++.+++|..
T Consensus 176 a~~g----------~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 176 ARTG----------KELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred cccC----------ceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 9764 23455667799999999999998 89999999999999999999999999999999999999987
Q ss_pred CEEEEEeCCCcEEEEEcCCCCC--CCCCc---CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 231 HVFYAGSRDGSIYIAALNAESP--STSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~--~~~~~---~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
..++.|+.....-+-....... ....+ -.+.+...++|-++|++++|+| |...++|++||.|++.....
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7777765433222222222111 00000 0134567889999999999999 99999999999999986543
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.7e-32 Score=228.77 Aligned_cols=290 Identities=24% Similarity=0.317 Sum_probs=232.2
Q ss_pred eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---ee----------------ecCCCCeeEEEECC
Q 014475 30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK----------------SLPAEPIKPIAANS 90 (424)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~----------------~~~~~~v~~~~~s~ 90 (424)
..+..|...+.+++ ++|++++.++++.+ |+|.-|++.++... .. ..|...+.+++.|+
T Consensus 136 ~~~~~H~~s~~~va--ls~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVA--LSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eeeccccCcceEEE--eeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 34445668889999 99999999999998 99999998765521 10 14667899999999
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
||+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|+++. ...+.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-----------~s~vet 281 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-----------LSYVET 281 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-----------hHHHHH
Confidence 999999999999999999999999999999999999999998888899999999999999943 456778
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+.+|++.|.++...... ..+-+|+.|.++++|++.....+....+.+.+.|++|-. ...|++|+.+|.|.+|++...
T Consensus 282 lyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeeccc
Confidence 89999999999887775 566666799999999996555444445778899999975 456899999999999999887
Q ss_pred CCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----cEEEEEeccCCCeeEEEEEecC
Q 014475 251 SPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLAKGPVNNILVVRRP 322 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~ 322 (424)
++.......+.+... ..+..+|++++..| .+++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++|
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG 437 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence 654332211211111 12334899999999 999999999999999999887 4555555 56899999999999
Q ss_pred ceeeec-cCCCceeec
Q 014475 323 LYLNLG-SFSNPHTSS 337 (424)
Q Consensus 323 ~~l~~~-~~d~~i~iw 337 (424)
++|++| +....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 976554 444444444
No 73
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=199.70 Aligned_cols=278 Identities=19% Similarity=0.246 Sum_probs=229.3
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCC--------------cee--eeecCCCCeeEEEECCCCCEEEEecC
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--------------QVE--VKSLPAEPIKPIAANSHGTYIAGGGQ 100 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--------------~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~ 100 (424)
..|.+++ |+|.|.+.++++.. +++++-....- .+. ....|.+.|.|.+|+|+|.++++|+.
T Consensus 33 qairav~--fhp~g~lyavgsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 33 QAIRAVA--FHPAGGLYAVGSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred hheeeEE--ecCCCceEEeccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 5678888 99999999999987 99988754310 111 22457899999999999999999999
Q ss_pred CCcEEEEEccCcce-----eeeeccccCCeEEEEEcc----CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEe
Q 014475 101 SGDIYMWEVASGRL-----LKKWHAHYRAVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 101 dg~v~iwd~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
|.+|++.-++...+ -..+..|.+.|..++|.. .+..|++++. |..|++-|. ...+..+.
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc-----------~~g~~~~a 178 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC-----------GRGQGFHA 178 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec-----------CCCCccee
Confidence 99999987754432 245678999999999964 3456666553 666777777 34556778
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---c-----CcceeEEEECCCCCEEEEEeCCCcE
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F-----PSVIDAIALDPAEHVFYAGSRDGSI 242 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l~~~~~dg~i 242 (424)
+.+|.+.|.++ +++++ ..+++|+.|.+|++||++-..++..+. + ...|.+++..|.|++|++|-.|...
T Consensus 179 ~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc 255 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC 255 (350)
T ss_pred ecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce
Confidence 89999999876 45666 799999999999999999888887765 2 2578999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----CcEEEEEeccCCCeeEEE
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRLAKGPVNNIL 317 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~ 317 (424)
.+||++.+ ++++.+..|...|.++.|+| ..++++++.|..|++-|+.- .-++.....|...+..+.
T Consensus 256 ~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r 326 (350)
T KOG0641|consen 256 MLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR 326 (350)
T ss_pred EEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE
Confidence 99999997 77889999999999999999 88999999999999999863 223455567999999999
Q ss_pred EEecCceeeeccCCCceeeccCC
Q 014475 318 VVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 318 ~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|+|+.-.+++.+.|.++.+|.++
T Consensus 327 wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 327 WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999875
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1e-32 Score=215.63 Aligned_cols=269 Identities=20% Similarity=0.329 Sum_probs=234.7
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.+|++++ +||.-.+-+-++|.-+-++.+|. ..|.... ...+...-|+++.| =+-++||.-++.......|..-
T Consensus 30 ~flisa~-kd~~pmlr~g~tgdwigtfeghk---gavw~~~--l~~na~~aasaaad-ftakvw~a~tgdelhsf~hkhi 102 (334)
T KOG0278|consen 30 YFLISAS-KDGKPMLRNGDTGDWIGTFEGHK---GAVWSAT--LNKNATRAASAAAD-FTAKVWDAVTGDELHSFEHKHI 102 (334)
T ss_pred eEEEEec-cCCCchhccCCCCCcEEeeeccC---cceeeee--cCchhhhhhhhccc-chhhhhhhhhhhhhhhhhhhhe
Confidence 5789999 99999999999999999998876 4566555 66666677777776 9999999999888888889999
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
|.+++|+.|.++|++|+.+..++|||++.. .+...+.+|.+.|..+.|....+.+++++.|++|++||.+++.
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt------ 176 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT------ 176 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc------
Confidence 999999999999999999999999999765 4567889999999999999999999999999999999997743
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCc
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
.++.+. .+.+|+++.+++++ .+++....+.|.+||..+..+++.+..+..|.+..++|+...+++|+.|..
T Consensus 177 -----~v~sL~-~~s~VtSlEvs~dG---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 177 -----EVQSLE-FNSPVTSLEVSQDG---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred -----EEEEEe-cCCCCcceeeccCC---CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE
Confidence 233333 45689999999997 455666678899999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 242 IYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
++.||..++. .+.. .++|.++|.|+.|+| |...++|++||+|++|.+..++.
T Consensus 248 ~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 248 VYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEEeccCCc---------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999984 3333 589999999999999 99999999999999999876653
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=5.1e-32 Score=232.06 Aligned_cols=285 Identities=14% Similarity=0.174 Sum_probs=226.0
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee------ecCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd 108 (424)
+...|.+++ +.|.|..+++|+.| .+|++||+.......+ ......|++++|++.|..|++.+.....+|+|
T Consensus 166 gtk~Vsal~--~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALA--VDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEee--ecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 446788888 99999999999998 9999999986553322 22367899999999999999888888999999
Q ss_pred ccCcceee-------------eeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475 109 VASGRLLK-------------KWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 109 ~~~~~~~~-------------~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
-. |..+. ..++|...++|.+|+|. .+.+++++.||++++||+++.....+.. ..+...+.
T Consensus 243 Rd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi-----k~k~~~g~ 316 (641)
T KOG0772|consen 243 RD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI-----KTKPAGGK 316 (641)
T ss_pred cC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE-----eeccCCCc
Confidence 54 43222 22689999999999994 4579999999999999997643211110 01112345
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee--cCc--ceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV--FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~--~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
.-+++.++|++++ +.+++|+.||.|.+|+......- ..+. |.. .|+++.|+++|++|++-+.|+.+++||++
T Consensus 317 Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 5678899999999 89999999999999997644322 2222 544 89999999999999999999999999999
Q ss_pred CCCCCCCCcCceeeeeeccc--CcCeEEEEecC-CCEEEEeC------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 249 AESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLISGS------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~l~t~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
..+ +++....+- ..+-+.++|+| .++|++|. ..|.+.+||..+.+.+..+.-....|..+.|+
T Consensus 395 q~k--------kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFK--------KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ccc--------cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 976 444444432 34567789999 88888886 35789999999999999998888899999999
Q ss_pred ecCceeeeccCCCceeecc
Q 014475 320 RRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 320 ~~~~~l~~~~~d~~i~iw~ 338 (424)
|.-+.|.+|+.||.++++-
T Consensus 467 pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred chhhheeeecCCCceEEEE
Confidence 9999999999999998763
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-31 Score=213.60 Aligned_cols=280 Identities=18% Similarity=0.273 Sum_probs=220.0
Q ss_pred EeeCCCCCCCceEEecceeecCCCccc-cCCCCceeEEEEECCCC-cee--eeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 28 RYKSCASPPHGLACVGQRFLASSQLRE-QPSASSGSILYWSWSKP-QVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~~~g~i~vwd~~~~-~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
.+.-...+.+.|.+++ |+|....++ +++.| |+|++|+++.. ... ....|.++|.+++|+.||..+++|+.|+.
T Consensus 19 d~ev~~pP~DsIS~l~--FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALA--FSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred ceecCCCcccchheeE--eccccCceEEecccC-CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 3444556778899999 999666666 55555 99999999863 332 33457999999999999999999999999
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEccCCc--EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (424)
+++||+.+++ ...+..|.++|.++.|-+... .|+|||.|.+|+.||.+. ..++.++. -..++.++
T Consensus 96 ~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-----------~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 96 AKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-----------SNPVATLQ-LPERVYAA 162 (347)
T ss_pred eEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-----------CCeeeeee-ccceeeeh
Confidence 9999999994 566778999999999987554 899999999999999965 22333333 23344444
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
..- . ..++.+..+..|.+|+++++..... +. ..-.++|++..++....+.|+-+|++.+..++.+.+ ...+.
T Consensus 163 Dv~--~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFt 237 (347)
T KOG0647|consen 163 DVL--Y--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFT 237 (347)
T ss_pred hcc--C--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCcee
Confidence 432 2 6788899999999999976643322 22 456789999999988889999999999999998755 44444
Q ss_pred ceeeeeec---ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 259 MHIIGSLS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 259 ~~~~~~~~---~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
+++.+... +.-..|++++|+| ...|+|++.||++.+||-.....+++.+.|..+|++..|+.+|.++|-+
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 44443311 1234688899999 8899999999999999999999999999999999999999999998754
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-31 Score=235.31 Aligned_cols=267 Identities=19% Similarity=0.299 Sum_probs=232.2
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeec-CC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL-PA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~-~~ 80 (424)
+.||.|. ...|.+|+..+++...-.... ...|+++. |+++|.+|+++..+ |.|.|||....+.. .... |.
T Consensus 189 n~laVal--g~~vylW~~~s~~v~~l~~~~---~~~vtSv~--ws~~G~~LavG~~~-g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 189 NVLAVAL--GQSVYLWSASSGSVTELCSFG---EELVTSVK--WSPDGSHLAVGTSD-GTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred CeEEEEe--cceEEEEecCCCceEEeEecC---CCceEEEE--ECCCCCEEEEeecC-CeEEEEehhhccccccccCCcC
Confidence 4566666 458999999999865544332 57899999 99999999999998 99999998766544 2333 89
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
..|-+++|+ +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|++++++|+.|+.+.|||..
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~------- 331 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL------- 331 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-------
Confidence 999999998 77899999999999999998876655 88999999999999999999999999999999993
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE--
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-- 235 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-- 235 (424)
...+...+..|...|.+++|+|-.. ..||+|+ .|+.|++||..+++.+..+.....|..+.|++..+-+++
T Consensus 332 ----~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 332 ----SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ----CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec
Confidence 3456778899999999999999865 7888875 589999999999999999999999999999998877766
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
|..++.|.||+..+. ..+..+.+|...|..++++| +..+++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 456779999999984 67889999999999999999 999999999999999998765
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=243.86 Aligned_cols=279 Identities=21% Similarity=0.347 Sum_probs=242.9
Q ss_pred CCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 113 (424)
...+.+.. |. ...+++++.+ ++|++|+...+.... ...|.+.|.++++..-+..+++|+.|.++++||..+|+
T Consensus 208 ~~~~~~~q--~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 208 DHVVLCLQ--LH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred cchhhhhe--ee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 44556655 55 5566677776 999999998877654 46799999999998888999999999999999999999
Q ss_pred eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
+...+.+|.+.|.++... ...+++|+.|.+|++|++. ....+..+.+|..+|.++... + ..++
T Consensus 283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-----------n~~~l~l~~~h~~~V~~v~~~--~--~~lv 345 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-----------NGACLNLLRGHTGPVNCVQLD--E--PLLV 345 (537)
T ss_pred EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-----------CcceEEEeccccccEEEEEec--C--CEEE
Confidence 999999999999999886 4578889999999999995 456677888899999999987 3 7999
Q ss_pred EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
+|+.|++|++||+.++++++.+. |...|.++.+.+. ..++.|+.|+.|++||+++.. +++..+.+|...+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLV 416 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCcccc
Confidence 99999999999999999999998 9999999988766 899999999999999999963 5788899999988
Q ss_pred EEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 273 TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 273 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
..+.+. +++|++++.|++|++||..++++++.+.+ |.+.|..+++. ...+++++.|+.+++||++++++...+
T Consensus 417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccc-cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 776654 79999999999999999999999999998 66888888887 467899999999999999988765543
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-31 Score=213.53 Aligned_cols=277 Identities=17% Similarity=0.294 Sum_probs=224.5
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
..+...|..+. |+|.++.|++++.| |++++|++...+......|..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 10 npP~d~IS~v~--f~~~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 10 NPPEDGISSVK--FSPSSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CCChhceeeEE--EcCcCCcEEEEecc-CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 34567899998 99999999999998 999999999998888889999999999997 456889999999999999888
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
... .+..|..+|.|+.+++....+++|+.|++|++||.+.. .....+. ....|.++... + +.|
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----------~~~~~~d-~~kkVy~~~v~--g--~~L 148 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----------VVVGTFD-QGKKVYCMDVS--G--NRL 148 (323)
T ss_pred cce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----------ccccccc-cCceEEEEecc--C--CEE
Confidence 754 44569999999999998889999999999999999641 1112222 22366665553 3 689
Q ss_pred EEEeCCCcEEEEecCCCceeeee---ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC-CCCCCCcCceeeeeecc-
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPSTSSYGMHIIGSLSD- 267 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~- 267 (424)
+.|+.+..+.+||+++....... ...-.++++++-|++.-+++++-||++.+=.++.. ......+.+++......
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~ 228 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD 228 (323)
T ss_pred EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence 99999999999999987654422 25678999999998888999999999998777665 22222233333322221
Q ss_pred --cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475 268 --HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (424)
Q Consensus 268 --~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 330 (424)
--.+|++++|+| ...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 135799999999 999999999999999999999999999888889999999999999999863
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=209.25 Aligned_cols=245 Identities=17% Similarity=0.286 Sum_probs=217.1
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee--eccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 153 (424)
..|..+|.+++|+.+|..|++|+.|+++.+|+++..+.... .++|.+.|..++|+| +...|++++.|.+|++||++.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 45778999999999999999999999999999988765544 478999999999988 677899999999999999965
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
.++..........+ -+.|+|++ ++++.++.|..|.+.|.++.+.....+....++.++|+-++.++
T Consensus 97 -----------~k~~~~i~~~~eni-~i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 97 -----------GKCTARIETKGENI-NITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred -----------CcEEEEeeccCcce-EEEEcCCC--CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 33444444444444 46899998 89999999999999999999999998889999999999888988
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (424)
+.....|+|.|.....- +++..+++|.....|+.|+| |++||+|+.|..+.+||+...-+++.+..+.-|
T Consensus 163 flt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred EEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence 88888899999998864 77889999999999999999 999999999999999999999999999999999
Q ss_pred eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
|..+.|+.||++||+||+|-.|-|=+++++..
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 99999999999999999999998887776653
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=9e-31 Score=219.90 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=234.7
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eeeecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~~~~~~ 81 (424)
..+.||+ .|..+.++|..+++.+..+++|. ..|+.+. |+++...+++++.+ -.|+||....... .....|.+
T Consensus 232 ~~ilTGG-~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~--~~~~~~~v~~aSad-~~i~vws~~~~s~~~~~~~h~~ 304 (506)
T KOG0289|consen 232 SKILTGG-EDKTAVLFDKPSNQILATLKGHT---KKITSVK--FHKDLDTVITASAD-EIIRVWSVPLSSEPTSSRPHEE 304 (506)
T ss_pred CcceecC-CCCceEEEecchhhhhhhccCcc---eEEEEEE--eccchhheeecCCc-ceEEeeccccccCccccccccc
Confidence 3578999 99999999999999998888755 5677777 99999999999998 9999999876543 35567899
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
+|+.+..+|.|.||++++.||+..+.|++++..+..... ..-.+++.+|+|||..|.+|..||.|++||+.+
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks------ 378 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS------ 378 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC------
Confidence 999999999999999999999999999999988776653 234589999999999999999999999999954
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc--ceeEEEECCCCCEEEEEe
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~ 237 (424)
...+..|.+|.++|..++|+.+| .+|++++.|+.|++||+|.-+..+.+..+. .+.+++|.+.|.+|+.++
T Consensus 379 -----~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 379 -----QTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred -----ccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 33577889999999999999999 999999999999999999999888887544 599999999999999998
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
.+=.|++++-.+.. |..+..+..|.+..+.+.|.. ..++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88777777765554 678888889999999999998 899999999999988764
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-31 Score=209.45 Aligned_cols=263 Identities=16% Similarity=0.253 Sum_probs=217.7
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEEC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAAN 89 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s 89 (424)
.|++.|-++..++-+...... .-.+++..++ |+++....+.+...||++++||...+...+ ...|...|.++.|+
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSY-DTEDGLFDVA--WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN 113 (311)
T ss_pred CceEEEEecCCCCCeEEEEee-ecccceeEee--ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccc
Confidence 588999998766666555433 2457788888 998766555444444999999976555443 35689999999999
Q ss_pred C-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475 90 S-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 90 ~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
+ ++..+++++.|++|++|+...++.++++.+|...|....|+| .++.+++++.|+.+++||++. . .+.
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~-gk~ 183 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------P-GKF 183 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------C-Cce
Confidence 8 567788889999999999999999999999999999999999 678999999999999999965 2 222
Q ss_pred EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEE
Q 014475 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYI 244 (424)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i 244 (424)
+ .+..|...|.++.|+.-.. +.++||+.|+.|+.||+++-+ ++..+. |.-.|+.+.|+|. ...|++++.|=++++
T Consensus 184 ~-~i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 184 M-SIEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred e-EEEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence 3 3788999999999998665 899999999999999998754 444444 8889999999995 577889999999999
Q ss_pred EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~ 297 (424)
||...+. ..+.+...|..-+..+.|++ ..++|+++.|+.++||+.
T Consensus 262 w~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 262 WDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9998764 55666777999999999999 889999999999999984
No 83
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.9e-30 Score=234.29 Aligned_cols=254 Identities=14% Similarity=0.196 Sum_probs=197.6
Q ss_pred eecCCCccccCCCCceeEEEEECCCCce--------------eeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEcc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQV--------------EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~--------------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~ 110 (424)
.++++..+++++.+ .....|+...+.. .....|.++|.+++|+| ++++|++|+.|++|++||+.
T Consensus 28 ~~~d~~~~~~~n~~-~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 28 ALWDCSNTIACNDR-FIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred ccCCCCCcEeECCc-eEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 55665656655554 5666666443221 12346889999999999 88999999999999999997
Q ss_pred Cc-------ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 111 SG-------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 111 ~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
++ +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++ ......+.+|...|.+++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-----------g~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----------GKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------CeEEEEEcCCCCceEEEE
Confidence 65 3466788999999999999975 6899999999999999965 234567788999999999
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCc-ceeEEEECCCCCEEEEEe----CCCcEEEEEcCCCCCCCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS-VIDAIALDPAEHVFYAGS----RDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~ 256 (424)
|++++ ..|++++.|+.|++||+++++.+..+. |.. ....+.|.+++..+++++ .|+.|++||++...
T Consensus 176 ~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----- 248 (493)
T PTZ00421 176 WNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----- 248 (493)
T ss_pred EECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----
Confidence 99998 899999999999999999999887776 443 345678899877777654 47899999998754
Q ss_pred cCceeeeeecc-cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEec
Q 014475 257 YGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRR 321 (424)
Q Consensus 257 ~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~ 321 (424)
.+...... +...+....|++ +++|++++ .|+.|++||+.+++++..... +..++..++|.|.
T Consensus 249 ---~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 249 ---SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 22333322 234555667888 88888877 599999999999988776553 4457889999885
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=214.69 Aligned_cols=284 Identities=16% Similarity=0.205 Sum_probs=229.5
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCC------Cc-----------e--eeeecCCCCeeEEEECCCCCEE
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQ-----------V--EVKSLPAEPIKPIAANSHGTYI 95 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------~~-----------~--~~~~~~~~~v~~~~~s~~~~~l 95 (424)
|...+.+-+ |++||.++++|+.| -.|++.|++. .+ + .....|.++|+++.|+|....|
T Consensus 111 HK~~cR~aa--fs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 111 HKSPCRAAA--FSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred cccceeeee--eCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 445566666 99999999999998 9999999871 11 1 1223478999999999999999
Q ss_pred EEecCCCcEEEEEccCcceeeeec--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 96 AGGGQSGDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 96 ~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
++|+.|++|+++|+......+-++ ....+|.++.|+|.|.+|++|.....+++||+++...- .....-.+
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf--------vsanPd~q 259 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF--------VSANPDDQ 259 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe--------eecCcccc
Confidence 999999999999997654333332 24568999999999999999999999999999773221 11112356
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
|.+.|+++.+++.+ +..++++.||.|++||--+++++..+. ....|.+..|..+++++++.+.|..+++|.+.++
T Consensus 260 ht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 260 HTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 99999999999998 899999999999999999999998887 3567999999999999999999999999999997
Q ss_pred CCCCCCcCceeeeeeccc-----CcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecC
Q 014475 251 SPSTSSYGMHIIGSLSDH-----SKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRP 322 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~ 322 (424)
+++....+- ...-+...|+. .++++.-. ..+.+.-||.+++..+..+. +|++++..+.-+|.+
T Consensus 338 ---------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 338 ---------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE 408 (430)
T ss_pred ---------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence 444444432 12223455666 77777765 35779999999987776554 799999999999999
Q ss_pred ceeeeccCCCceeeccCC
Q 014475 323 LYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 323 ~~l~~~~~d~~i~iw~~~ 340 (424)
.-+++++.|-.+++|..+
T Consensus 409 p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred Cceeeecccceeeeeeec
Confidence 999999999999999765
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-29 Score=203.39 Aligned_cols=279 Identities=15% Similarity=0.165 Sum_probs=225.1
Q ss_pred CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecC--CCcEEEEEccCc
Q 014475 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASG 112 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~ 112 (424)
...+.+++ |+++|..+++++.| ..+++||..++....... +.-.+..++|....+.++.++. |.+|+..++.+.
T Consensus 14 ~~~i~sl~--fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 14 NGKINSLD--FSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCceeEEE--ecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 45688888 99999999998876 899999999887765443 4567888888777666776665 889999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+.++.+.+|...|++++.+|-+..+++++.|++|++||++.. + +...+.. ..-..+++.|.| -++
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~---------~--cqg~l~~--~~~pi~AfDp~G--Lif 155 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK---------K--CQGLLNL--SGRPIAAFDPEG--LIF 155 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC---------C--CceEEec--CCCcceeECCCC--cEE
Confidence 999999999999999999998899999999999999999751 1 1111221 222346788888 788
Q ss_pred EEEeCCCcEEEEecCCC--ceeeeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 193 VSASEDRTCKVWSLLKG--RLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
|++...+.|++||++.- .+...+. .....+.+.|+|+|++++.++..+.+++.|.-.+. ....+.
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs 226 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFS 226 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEe
Confidence 88888889999999863 3444444 24678999999999999999999999999998874 344444
Q ss_pred ccCcC---eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 267 DHSKA---VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 267 ~~~~~---i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
.+... -....|.| ++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|.-.+++++ +..+.+|-...
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 44332 25678899 99999999999999999999999999998 68899999999987777765 56788887654
Q ss_pred CC
Q 014475 342 SQ 343 (424)
Q Consensus 342 ~~ 343 (424)
.+
T Consensus 305 ~~ 306 (311)
T KOG1446|consen 305 DA 306 (311)
T ss_pred cc
Confidence 43
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-30 Score=206.32 Aligned_cols=254 Identities=16% Similarity=0.231 Sum_probs=215.4
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFE 156 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~ 156 (424)
....|+++.|+++|.++++++.|.++++||..+++.++++..+.-.+..++|....+.++.++. |.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl----- 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL----- 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence 4678999999999999999999999999999999999999888888999999877777777776 889999999
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (424)
...+.++.+.+|...|++++.+|.+ ..+++++.|++|++||++..++...+... .-..++++|+|-++|++
T Consensus 88 ------~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 88 ------HDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALA 158 (311)
T ss_pred ------ecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEe
Confidence 4577899999999999999999998 89999999999999999988877666533 34457899999999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe--
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-- 313 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 313 (424)
.....|++||++.-.... +.......+.....+.+.|+| |++++.+...+.+++.|.-+|..+.++..+...-
T Consensus 159 ~~~~~IkLyD~Rs~dkgP----F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGP----FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred cCCCeEEEEEecccCCCC----ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 988899999999853211 111111114467789999999 9999999999999999999999999998876533
Q ss_pred -eEEEEEecCceeeeccCCCceeeccCCCCCCCCCccc
Q 014475 314 -NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK 350 (424)
Q Consensus 314 -~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 350 (424)
-...|+||++++++|+.||+|.+|+++++.....++.
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 5778999999999999999999999988765544433
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-31 Score=222.73 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=210.6
Q ss_pred eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcc----------eeeeeccccCCeEEEEEcc-CCcEEEEeeC
Q 014475 75 VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR----------LLKKWHAHYRAVTCLVFSE-DGSFLISGSE 142 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~ 142 (424)
.+..|.+.|+.+++.|. ..++|+++..+.|.|||..+.. +...+.+|.+.-.+++|++ ..-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 34568999999999995 5567777888999999986532 1226788999888999998 4457999999
Q ss_pred CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--Cceeeeee-cCc
Q 014475 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIV-FPS 219 (424)
Q Consensus 143 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~-~~~ 219 (424)
|+.|++||+...... .....+...+.+|...|..++|++... ..|++++.|+.+.|||+|+ .++..... |.+
T Consensus 199 d~~i~lwdi~~~~~~----~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 DHTICLWDINAESKE----DKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred CCcEEEEeccccccC----CccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 999999999764332 122345667899999999999999876 7899999999999999995 44444444 899
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475 220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd 296 (424)
.++|++|+| ++..||+|+.|++|.+||+|+.. .++..+.+|...|.++.|+| ...|++++.|+.+.+||
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 999999999 66788899999999999999986 67889999999999999999 78999999999999999
Q ss_pred CCCC--------------cEEEEEeccCCCeeEEEEEecCce-eeeccCCCceeeccCCC
Q 014475 297 PITH--------------NIVRMFRLAKGPVNNILVVRRPLY-LNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 297 ~~~~--------------~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~d~~i~iw~~~~ 341 (424)
+..- +++..-.+|...|..+.|+|+..+ |+++++|+.+.||....
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8642 234566689999999999998765 57899999999999873
No 88
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=1.6e-30 Score=234.85 Aligned_cols=320 Identities=19% Similarity=0.294 Sum_probs=266.5
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~ 80 (424)
..+|.|. .+|+|.|+|++.++.+.+++.. ...|+.++ |..||..+.+++...|.+-+||++..+... ...|.
T Consensus 215 DVVaiG~-~~G~ViifNlK~dkil~sFk~d---~g~VtslS--FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~ 288 (910)
T KOG1539|consen 215 DVVAIGL-ENGTVIIFNLKFDKILMSFKQD---WGRVTSLS--FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY 288 (910)
T ss_pred eEEEEec-cCceEEEEEcccCcEEEEEEcc---ccceeEEE--eccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc
Confidence 4688999 9999999999999999999743 36788888 999998777666655999999999887653 34588
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEc-cCCcEEEEeeCCCcEEEEeCCccc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
+.|....|-|....+++++.|..+++|=.+++ +.++.-.+|..+..|+.|. .++.++.+++.|++++.+++....
T Consensus 289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 99999999999999999999999888866654 4456667899999999998 588899999999988888763211
Q ss_pred chhcc--------------------------------------------------------------------c------
Q 014475 156 EECES--------------------------------------------------------------------Q------ 161 (424)
Q Consensus 156 ~~~~~--------------------------------------------------------------------~------ 161 (424)
...+. .
T Consensus 369 ~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~ 448 (910)
T KOG1539|consen 369 QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDD 448 (910)
T ss_pred HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccC
Confidence 00000 0
Q ss_pred ----------------------------ccccceEEee---cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475 162 ----------------------------RASHLYLHSF---TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (424)
Q Consensus 162 ----------------------------~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 210 (424)
-........+ ..|..+|++++...-+ +.+++++.+|.+++||..+..
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n--~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN--RLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC--ceEEEccCcceEEEEecCCcc
Confidence 0001111122 3577788888776665 889999999999999999999
Q ss_pred eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
++..+.....+.++..+.....++++..|-.|+++|..+. +.+..+.+|.+.|++++||| |++|++++.|
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~---------kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR---------KVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh---------hhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 9999999999999999999999999999999999999986 67888999999999999999 9999999999
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC-CceeeccCC
Q 014475 290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRH 340 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-~~i~iw~~~ 340 (424)
++|++||+.++.++-.+. -..+.+++.|+|+|.+||++..| .-|++|.-.
T Consensus 598 ~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999886 46899999999999999999998 569999644
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=3e-30 Score=236.83 Aligned_cols=271 Identities=23% Similarity=0.410 Sum_probs=231.7
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEE-eeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLR-YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~ 80 (424)
.++++++ .|++|++||..++..+.. +.+|. .+|.+++ +..-+..+++++.| .++++||..++++... ..|.
T Consensus 219 ~~~~~~s-~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~--~~~~~~~lvsgS~D-~t~rvWd~~sg~C~~~l~gh~ 291 (537)
T KOG0274|consen 219 GFFKSGS-DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLA--FPSGGDKLVSGSTD-KTERVWDCSTGECTHSLQGHT 291 (537)
T ss_pred CeEEecC-CCceeEEeecccceEEEeeccCCC---CCceeEE--EecCCCEEEEEecC-CcEEeEecCCCcEEEEecCCC
Confidence 4678899 999999999999998877 66554 6677777 77767888888887 9999999999987754 4589
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
+.|.++... +..+++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.++++|+.||+|++||+.
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-------- 359 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-------- 359 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh--------
Confidence 999998875 4578889999999999999999999999999999999998 7899999999999999995
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
...+++.+.+|...|.++.+... ..+++|+.|++|++||+++. +++..+. |...+.. +...+++|++++.
T Consensus 360 ---~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 360 ---TGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSA 431 (537)
T ss_pred ---hceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccc
Confidence 46688999999999999987664 68999999999999999999 8888888 4444533 3447889999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (424)
|+.|++||..++ .++..+.+ |...|.++++. ...+++++.||.+++||++++++.+.+-.+.
T Consensus 432 D~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 432 DGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred cccEEEeecccC---------ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 999999999997 56667777 67888888875 5789999999999999999999988774333
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=6.3e-30 Score=214.83 Aligned_cols=282 Identities=16% Similarity=0.172 Sum_probs=240.5
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 113 (424)
...++.++. ..|....++++|.| ..+.++|...++.. ...+|...|+.+.|+|+...+++++.|..|+||......
T Consensus 218 ~~pgi~ald--~~~s~~~ilTGG~d-~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 218 STPGITALD--IIPSSSKILTGGED-KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCCCeeEEe--ecCCCCcceecCCC-CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 445677777 77777888999997 99999999887765 556789999999999999999999999999999998888
Q ss_pred eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
.......|..+|+.+..+|.|.||++++.||+..+.|++++.. .....-....-.+++.+|+|+| ..|.
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---------lt~vs~~~s~v~~ts~~fHpDg--Lifg 363 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---------LTVVSDETSDVEYTSAAFHPDG--LIFG 363 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---------EEEEeeccccceeEEeeEcCCc--eEEe
Confidence 8888899999999999999999999999999999999977432 2222222344568999999999 8999
Q ss_pred EEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcC
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKA 271 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~ 271 (424)
+|..|+.|++||+.++.....|. |.++|..++|+.+|-+|++++.|+.|++||+|... ...++. ....+
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKE 434 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------ccceeecccccc
Confidence 99999999999999999888888 89999999999999999999999999999999864 222222 22347
Q ss_pred eEEEEecC-CCEEEEeCCCCcEEEEeCC--CCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 272 VTCLAYST-GDLLISGSEDGMVRVWDPI--THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+.++.|.+ |.+|+.++.|=.|++++-. +..++..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999 9999999888777776633 56788889999999999999999999999999999887754
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=9.1e-31 Score=230.37 Aligned_cols=289 Identities=14% Similarity=0.204 Sum_probs=243.8
Q ss_pred cCCCccccCCCCceeEEEEECCCCce-------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--ceeeee
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW 118 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~ 118 (424)
|.+++|.++|.| |.|++|+.....- .....|.+.|+.+....+++.|++++.|-+|++|+...+ -+..++
T Consensus 35 ~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 567789999998 9999999874322 122457889999999999999999999999999999887 577888
Q ss_pred ccccCCeEEEEE-ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEe
Q 014475 119 HAHYRAVTCLVF-SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 119 ~~~~~~i~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
..|...|.|++. -++...+++|+-|+.|.+||++++....... ........+. ++..+|.+++.++.+ ..+++|+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGg 190 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGG 190 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccceeeeecCCcc--eEEEecC
Confidence 999999999999 7788899999999999999999864421111 1222233334 899999999999988 8999999
Q ss_pred CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
..+.+++||.++++.+..+. |...|.++..+++|..+++++.||+|++||+... +++.++..|...|.++
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWAL 261 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEEeccCceEEE
Confidence 99999999999998888887 9999999999999999999999999999999987 7888999999999999
Q ss_pred EecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcc
Q 014475 276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD 349 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 349 (424)
..+| -..+++|+.||.|..=|+++......+.....||..+..+.+.+-+-+++.|+.|+-|.....-...+.+
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~ 336 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSG 336 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCC
Confidence 9999 8899999999999999999965555555577899999998766666788899999999987554433333
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=6.5e-31 Score=224.69 Aligned_cols=277 Identities=19% Similarity=0.277 Sum_probs=238.8
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEECCCCCEEEEecCCCcEEEEE
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd 108 (424)
|..-|.++. .+...+.+.++|. |.|+|||+....-.... ....-|+++...|||+.|++|++-.++.|||
T Consensus 418 HGEvVcAvt--IS~~trhVyTgGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 418 HGEVVCAVT--ISNPTRHVYTGGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred cCcEEEEEE--ecCCcceeEecCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 434466666 8889999999998 89999999765322111 1356799999999999999999999999999
Q ss_pred ccCccee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 109 VASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 109 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
+...... ..+....-....++.+||.+..+++..||.|.|||+. ....+..+++|...+.||.++++
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-----------nq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-----------NQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----------cceeeecccCCCCCceeEEecCC
Confidence 9766443 3444444567789999999999999999999999994 46678999999999999999999
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
| ..|.+|+-|++|+.||+++++.+....+...|.++..+|.+.++++|-.++.+.+....... ...+.
T Consensus 563 G--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlh 630 (705)
T KOG0639|consen 563 G--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLH 630 (705)
T ss_pred C--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeec
Confidence 9 89999999999999999999999988899999999999999999999999999998887643 34566
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
-|+.-|.++.|.+ |+++++.+.|+.+..|...-|..+...+ ...+|.++.++.|.++|++|+.|+...+|.+
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 7899999999999 9999999999999999999998888776 5679999999999999999999988877754
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-30 Score=210.51 Aligned_cols=273 Identities=22% Similarity=0.296 Sum_probs=233.8
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEEC------CCCc----
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW------SKPQ---- 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~------~~~~---- 72 (424)
.++.+++ .|.+-+||.+++|+++.++.+|. +.|.+++ |++.+.++++++.| ++-+||.. ..+.
T Consensus 161 pi~gtAS-ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsik--fh~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 161 PICGTAS-ADHTARIWSLESGACLATYTGHT---GSVNSIK--FHNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred cceeecc-cccceeEEeeccccceeeecccc---cceeeEE--eccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCC
Confidence 3678999 99999999999999999998765 5577777 99999999999998 99999972 1100
Q ss_pred -------------------------------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc
Q 014475 73 -------------------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121 (424)
Q Consensus 73 -------------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 121 (424)
......|...|.+..|-..|+.+++++.|.+-.+||+++++.+..+.+|
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH 313 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH 313 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence 0112346778999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
....+.++-+|..+++++++.|.+.++||++. ....+..+++|...|++..|..+ ..+++|+.|.+|
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTv 380 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTV 380 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchh----------hcceeeeecccccceeEEEEecC---CceeecCCCceE
Confidence 99999999999999999999999999999963 34567789999999999999987 589999999999
Q ss_pred EEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475 202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (424)
Q Consensus 202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 279 (424)
++||+++. .++..+....+++.++.+..+..++.-..+..|++||++...... -+...-++|..-|+|++|..
T Consensus 381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeecccc
Confidence 99999975 467788899999999999999999999999999999998865322 12234568999999999975
Q ss_pred --CCEEEEeCCCCcEEEEeCCCC
Q 014475 280 --GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 280 --~~~l~t~~~dg~i~iwd~~~~ 300 (424)
-.-|++++.|..+.=|.+...
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccccccceeeeeEeccc
Confidence 456889999999999998754
No 94
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.7e-29 Score=231.79 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=192.7
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCc----------cee---eeeccccCCeEEEEEcc-CCcEEEEeeCCCcE
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLL---KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV 146 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~---~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i 146 (424)
..|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+| ++++|++|+.|+.|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44555566667655666666665666654333 211 23678999999999999 88999999999999
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (424)
++||+.+.... ......+..+.+|...|.+++|+|.+. ++|++++.|++|++||+++++....+. |...|.+++
T Consensus 101 kIWdi~~~~~~----~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 101 MGWGIPEEGLT----QNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEecCCCccc----cccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999653210 011234667889999999999999753 689999999999999999998888877 788999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC-eEEEEecC-CCEEEEeC----CCCcEEEEeCCC
Q 014475 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYST-GDLLISGS----EDGMVRVWDPIT 299 (424)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~-~~~l~t~~----~dg~i~iwd~~~ 299 (424)
|+|++.+|++++.|+.|++||++++ ..+..+.+|... +..+.|.+ +..+++++ .|+.|++||+++
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 9999999999999999999999986 456667778764 44677888 66676654 479999999987
Q ss_pred Cc-EEEEEeccC-CCeeEEEEEecCceeeecc-CCCceeeccCCCCCC
Q 014475 300 HN-IVRMFRLAK-GPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQL 344 (424)
Q Consensus 300 ~~-~~~~~~~~~-~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~~~~~ 344 (424)
.. ++.....+. ..+....|++++.+|++++ .|+.|++|++..+++
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 54 444444333 3556677899999998887 599999999987664
No 95
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3e-29 Score=231.01 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=186.0
Q ss_pred ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475 98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (424)
Q Consensus 98 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (424)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||.|++||+.+...... ....++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---EIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---ccccceEEeecCCC
Confidence 667889999998887888889999999999999996 78999999999999999975321100 00123456788999
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
.|.+++|+|++. ..+++++.|++|++||+++++....+.+...|.+++|+|+|.+|++++.|+.|++||++++
T Consensus 127 ~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------ 199 (568)
T PTZ00420 127 KISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------ 199 (568)
T ss_pred cEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------
Confidence 999999999873 4567999999999999999988877778889999999999999999999999999999986
Q ss_pred cCceeeeeecccCcCeEEE-----EecC-CCEEEEeCCCC----cEEEEeCCC-CcEEEEEeccC--CCeeEEEEEecCc
Q 014475 257 YGMHIIGSLSDHSKAVTCL-----AYST-GDLLISGSEDG----MVRVWDPIT-HNIVRMFRLAK--GPVNNILVVRRPL 323 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~-----~~~~-~~~l~t~~~dg----~i~iwd~~~-~~~~~~~~~~~--~~v~~l~~s~~~~ 323 (424)
..+..+.+|.+.+.+. .|++ +.+|++++.|+ .|+|||+++ ++++..+..+. +.+......+++.
T Consensus 200 ---~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 200 ---EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred ---cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 4566788888765433 3446 78888877664 799999995 56666654332 3333344445688
Q ss_pred eeeeccCCCceeeccCCCCC
Q 014475 324 YLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 324 ~l~~~~~d~~i~iw~~~~~~ 343 (424)
++++|+.|+.|++|++..+.
T Consensus 277 l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEEEEECCCeEEEEEccCCc
Confidence 99999999999999997653
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-30 Score=203.74 Aligned_cols=252 Identities=18% Similarity=0.208 Sum_probs=209.5
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEE
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIW 149 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iw 149 (424)
+...|.+.|..+...--|+.||+++.|++|+|+..++. +.+.++.+|.++|..++|.. -|.+|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34567788888887778999999999999999999765 46788999999999999965 79999999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeee--ecCcceeEEE
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNI--VFPSVIDAIA 225 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~--~~~~~i~~~~ 225 (424)
.-++ ...........|...|++++|.|.+.+-.|++++.||.|.+.+.+.. -....+ .|+-.+++++
T Consensus 86 ke~~---------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 86 KEEN---------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ecCC---------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 9866 33445566788999999999999988899999999999999998754 122222 3888999999
Q ss_pred ECCC---C-----------CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-----CCEEEEe
Q 014475 226 LDPA---E-----------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----GDLLISG 286 (424)
Q Consensus 226 ~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~t~ 286 (424)
|.|. | +.|++|+.|..|+||+..... +..-..+.+|...|+.++|.| ...|+++
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9985 4 569999999999999999864 455556999999999999999 3589999
Q ss_pred CCCCcEEEEeCCCC-c--EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 287 SEDGMVRVWDPITH-N--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 287 ~~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+.||++.||..+.. + ....+.....++..+.||..|..|++++.|+.+.+|.-+..
T Consensus 230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 99999999987622 1 12223345678999999999999999999999999986643
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=229.66 Aligned_cols=239 Identities=18% Similarity=0.310 Sum_probs=195.4
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCC--------------------------------Cc---------
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--------------------------------PQ--------- 72 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~--------------------------------~~--------- 72 (424)
.|.++|.++. |++||++||+||.| +.|+||.+.. ..
T Consensus 265 ah~gaIw~mK--FS~DGKyLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMK--FSHDGKYLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEE--eCCCCceeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 6778999999 99999999999998 9999998755 00
Q ss_pred --------------------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc
Q 014475 73 --------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE 132 (424)
Q Consensus 73 --------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 132 (424)
+....+|.+.|..+.||.++ +|++++.|.+|++|++...+++..|. |...|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 00011367789999999764 78999999999999999999999997 999999999999
Q ss_pred -CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce
Q 014475 133 -DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL 211 (424)
Q Consensus 133 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 211 (424)
|.++|++|+-||.++||++.. . .+..+..-..-|+++++.|+| +..+.|+.+|.+++|+....+.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d-----------~-~Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISD-----------K-KVVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred cCCCcEeecccccceEEeecCc-----------C-eeEeehhhhhhheeEEeccCC--ceEEEEEeccEEEEEEccCCeE
Confidence 889999999999999999943 2 234455556899999999998 8999999999999999987776
Q ss_pred eeeee---c------CcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecC
Q 014475 212 LRNIV---F------PSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST 279 (424)
Q Consensus 212 ~~~~~---~------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~ 279 (424)
..... + ...|+.+++.|. ...+++.+.|..|+|||.+.. .++..++++.. .-....|+.
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc
Confidence 65543 1 237999999984 446888999999999999876 44555655432 223456777
Q ss_pred -CCEEEEeCCCCcEEEEeCCCC
Q 014475 280 -GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 280 -~~~l~t~~~dg~i~iwd~~~~ 300 (424)
|++|+++++|..|++|+....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCC
Confidence 999999999999999998543
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=198.24 Aligned_cols=267 Identities=18% Similarity=0.265 Sum_probs=213.3
Q ss_pred EEEeecCCCCCceEEEeCCCCc------e---EEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce
Q 014475 3 LLIASSSVADTGIGCWDLESGA------E---QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV 73 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~ 73 (424)
..+++|+ ....|.=+++.-.. + +..+-.+..|...+++++ -++.++|+++.| -+|+|||+.+...
T Consensus 2 m~iIvGt-YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavA----Vs~~~~aSGssD-etI~IYDm~k~~q 75 (362)
T KOG0294|consen 2 MEIIVGT-YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALA----VSGPYVASGSSD-ETIHIYDMRKRKQ 75 (362)
T ss_pred eeEEEee-eeeEEEEEEeccCccccccccceeeeccccccccccceeEEE----ecceeEeccCCC-CcEEEEeccchhh
Confidence 4466777 56666656554222 1 112234566778899877 689999999998 9999999987654
Q ss_pred e-eeecCCCCeeEEEECCCCC--EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 74 E-VKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 74 ~-~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
. ....|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 4 5566899999999998764 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
+-++. ...+..+. + ..+.+.|+|.| .+++.+..+ .|-+|.+.+......+..+..+.++.|. ++
T Consensus 156 LV~Gr---------~a~v~~L~-~--~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~ 219 (362)
T KOG0294|consen 156 LVRGR---------VAFVLNLK-N--KATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG 219 (362)
T ss_pred hhcCc---------cceeeccC-C--cceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence 96632 22222222 1 22338899888 777777765 5999999988888888777777777765 56
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
..+++|..|+.|.+||.+.. .+...+.+|...|..+.+ .| +.+|+|++.||.|++||++..
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 78999999999999999985 567788999999999985 33 789999999999999999865
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=205.21 Aligned_cols=309 Identities=15% Similarity=0.288 Sum_probs=243.7
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeE
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKP 85 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~ 85 (424)
.+-.+.|||...+......+.. ...|.... |+|....+++.... |.+.+|+.+++....+. .....|.|
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk~s---ne~v~~a~--FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~ 251 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVKTS---NEVVFLAT--FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLC 251 (626)
T ss_pred CccccchhhchhhhccCcceec---cceEEEEE--eccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEE
Confidence 5566889999888777655543 34566666 99988777766665 99999999887654332 23578999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc--c-
Q 014475 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ--R- 162 (424)
Q Consensus 86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~- 162 (424)
++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||- ......+.+ .
T Consensus 252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NYRKLRETELPEQ 328 (626)
T ss_pred EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc-cccccccccCchh
Confidence 99999997 78899999999999988777777779999999999998886 556999999999992 211111100 0
Q ss_pred ---------------------------cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 163 ---------------------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 163 ---------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
..........+|......++.+|+. +.+++++.|+.+++|+ ..++....
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEE
Confidence 0111123346788888999999988 8999999999999999 67777777
Q ss_pred ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (424)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i 294 (424)
....+..++.|+|.| .+++|+..|...+.|..+. ..+..... ..++++++|+| |.+||.|+.|+.|+|
T Consensus 405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---------~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---------DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred EecCceeEeeccCcc-eEEEeeccceEEEEecccc---------eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 788999999999999 9999999999999999985 33444434 88999999999 999999999999999
Q ss_pred EeCCCC-cEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 295 WDPITH-NIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 295 wd~~~~-~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
|.+... ....... .+..+|+.+.|++|+++|.+-+-|-.|..|.....+
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 998754 3333332 344799999999999999999999999999554433
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=203.89 Aligned_cols=259 Identities=22% Similarity=0.363 Sum_probs=226.8
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC-----
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL----- 151 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~----- 151 (424)
..|.+.|..++.......+.+++.|.+-+||.++++.++..+.+|.+.|++++|++.+.++++++.|++..||..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 568999999999888889999999999999999999999999999999999999999999999999999999972
Q ss_pred -Ccc--------cchhc-------------ccc--cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475 152 -LTV--------FEECE-------------SQR--ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (424)
Q Consensus 152 -~~~--------~~~~~-------------~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~ 207 (424)
... .++.+ ... .-..++..+.+|...|.+..|...+ +.+++++.|.+..+||++
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVE 302 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeec
Confidence 110 00000 000 1123566788999999999999888 899999999999999999
Q ss_pred CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEe
Q 014475 208 KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISG 286 (424)
Q Consensus 208 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~ 286 (424)
+++++..+. |....+.++-+|..+++++.+.|.+.++||++... +.+..+++|...|+++.|..+..+++|
T Consensus 303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--------~sV~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--------QSVAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc--------ceeeeecccccceeEEEEecCCceeec
Confidence 999999988 88999999999999999999999999999999764 678899999999999999889999999
Q ss_pred CCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475 287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
+.|.+|++||+++. .++.+++ -..+++.++.+..+..|+.--++..|++||+++..+..
T Consensus 375 SDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred CCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 99999999999875 5677777 56899999999988899999999999999999887643
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.9e-28 Score=197.64 Aligned_cols=253 Identities=19% Similarity=0.203 Sum_probs=209.4
Q ss_pred eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.+...+.+.|..+.|+|.++.|++++.||++++||....+....++ |..++.+++|.+ ...+++|+.||.|+.+|+++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 3445567899999999999999999999999999998887666665 899999999986 56799999999999999976
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
+. ...+..|..+|.++...+.. ..+++|+.|++|++||.+.......+..+..|.++.. .++.|
T Consensus 85 ~~------------~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~L 148 (323)
T KOG1036|consen 85 GN------------EDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRL 148 (323)
T ss_pred Cc------------ceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEE
Confidence 32 23467799999999999876 7999999999999999998766677766777777766 67889
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----cEEEEEec
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRL 308 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----~~~~~~~~ 308 (424)
++|+.+..+.+||+++..... ...-..-...+.++++-| +.-++.++-||.|.+=.++.. +....|+.
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred EEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 999999999999999875211 112223456789999999 778888999999988776665 44556777
Q ss_pred cCC---------CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCcccc
Q 014475 309 AKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY 351 (424)
Q Consensus 309 ~~~---------~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 351 (424)
|.. ||++++|+|-...|+||+.||.|.+||....+....+.++
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 753 8999999999999999999999999999988877766666
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=202.44 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=217.6
Q ss_pred EEEeecCCCCCceEEEeCCC------------CceE---EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEE
Q 014475 3 LLIASSSVADTGIGCWDLES------------GAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWS 67 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~------------~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd 67 (424)
.++|||+ .|-.|+|.|++. |... ..++....|.+.|.++. |+|....|++++.| ++|+++|
T Consensus 125 ~lvATGs-aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--FHPre~ILiS~srD-~tvKlFD 200 (430)
T KOG0640|consen 125 SLVATGS-ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--FHPRETILISGSRD-NTVKLFD 200 (430)
T ss_pred cEEEccC-CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--ecchhheEEeccCC-CeEEEEe
Confidence 4789999 999999999872 1111 12344456788899999 99999999999998 9999999
Q ss_pred CCCCcee--ee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEee
Q 014475 68 WSKPQVE--VK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGS 141 (424)
Q Consensus 68 ~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~ 141 (424)
+.+.... .+ .....+|.++.|+|.|.+|++|.....+++||+++.++...- ..|.+.|+++.+++.+++.++++
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS 280 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS 280 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence 9876433 22 335679999999999999999999999999999998876554 46899999999999999999999
Q ss_pred CCCcEEEEeCCcccchhcccccccceEEeec-CC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFT-GH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219 (424)
Q Consensus 142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 219 (424)
.||.|++||--+ ..++.++. .| ...|.+..|..++ +++++.+.|..+++|.+.+++++..+...+
T Consensus 281 kDG~IklwDGVS-----------~rCv~t~~~AH~gsevcSa~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 281 KDGAIKLWDGVS-----------NRCVRTIGNAHGGSEVCSAVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred cCCcEEeecccc-----------HHHHHHHHhhcCCceeeeEEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 999999999733 34444443 34 4568888899988 999999999999999999999998886321
Q ss_pred ------ceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475 220 ------VIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM 291 (424)
Q Consensus 220 ------~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~ 291 (424)
.-+...|+....+++.-. ..+.+.-||.++.. +......+|.+.+..+.-+| +..+++++.|-.
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 223445666666666543 35679999999975 33334458999999999999 999999999999
Q ss_pred EEEEeCC
Q 014475 292 VRVWDPI 298 (424)
Q Consensus 292 i~iwd~~ 298 (424)
+++|--+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999744
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=197.95 Aligned_cols=249 Identities=20% Similarity=0.244 Sum_probs=203.6
Q ss_pred eeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccC-ccee-eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 74 EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-GRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 74 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
.+...+.+.|.+++||| ...++++++.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34445678999999999 566777999999999999986 3333 34467999999999999999999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
+.++ ....+..|..+|..+.|-+......|+||+.|++|+.||.+...++..+..+..+.++.. ..
T Consensus 101 L~S~------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~ 166 (347)
T KOG0647|consen 101 LASG------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LY 166 (347)
T ss_pred ccCC------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cC
Confidence 9662 345678899999999999887556899999999999999999999999999999888766 46
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC--cEEEEEe
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRMFR 307 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~--~~~~~~~ 307 (424)
.+++++..++.|.+|+++++..... .....-.-.++|++..+ .+..+.|+-+|.+.|..+..+ +.-.+|+
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k-------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFK-------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhh-------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 6788999999999999987642111 01111234578888877 666799999999999999887 4455677
Q ss_pred ccCC---------CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 308 LAKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 308 ~~~~---------~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.|.. +|++++|+|....|++++.||+..+||.....
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh
Confidence 7762 58899999999999999999999999987543
No 104
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.8e-28 Score=223.11 Aligned_cols=245 Identities=13% Similarity=0.151 Sum_probs=187.9
Q ss_pred ecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCce---------eee
Q 014475 7 SSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQV---------EVK 76 (424)
Q Consensus 7 t~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~---------~~~ 76 (424)
.|+ .++.|++|+......+..+.+ |...|.+++ |+|+ +.+|++++.| |+|++||+.+... ...
T Consensus 49 gGG-~~gvI~L~~~~r~~~v~~L~g---H~~~V~~la--fsP~~~~lLASgS~D-gtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 49 GGG-LIGAIRLENQMRKPPVIKLKG---HTSSILDLQ--FNPCFSEILASGSED-LTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCC-ceeEEEeeecCCCceEEEEcC---CCCCEEEEE--EcCCCCCEEEEEeCC-CeEEEEECCCCCccccccccceEEe
Confidence 456 789999999887777766765 456789998 9997 7888888887 9999999975421 123
Q ss_pred ecCCCCeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 77 SLPAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
..|...|.+++|+|++.. |++++.|+.|+|||+++++....+. |...|.+++|+|+|++|++++.|+.|++||+++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-- 198 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-- 198 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--
Confidence 458889999999998875 5788999999999999998777775 667899999999999999999999999999965
Q ss_pred chhcccccccceEEeecCCcCceeEEEE-----EEcCceeEEEEEeCCC----cEEEEecCC-CceeeeeecCccee---
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVI-----GYGGVSATIVSASEDR----TCKVWSLLK-GRLLRNIVFPSVID--- 222 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~~~~~i~--- 222 (424)
...+..+.+|.+.+....+ ++++ .++++++.|+ .|++||+++ .+++..+.+.....
T Consensus 199 ---------g~~i~tl~gH~g~~~s~~v~~~~fs~d~--~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 199 ---------QEIASSFHIHDGGKNTKNIWIDGLGGDD--NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred ---------CcEEEEEecccCCceeEEEEeeeEcCCC--CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 3345667888876654443 2454 7888877764 799999995 56666655443333
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG 280 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (424)
.....+++.++++|+.|+.|++|++..+. ...+..+. +..++.+++|.|.
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-------~~~l~~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQHSLGS-------IRKVNEYK-SCSPFRSFGFLPK 317 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEccCCc-------EEeecccc-cCCCccceEEccc
Confidence 23334568899999999999999997753 13333333 6678889999993
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-28 Score=217.85 Aligned_cols=279 Identities=22% Similarity=0.307 Sum_probs=229.9
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---eecCCCCeeE-EEECC-CCCEEEEe
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKP-IAANS-HGTYIAGG 98 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~-~~~s~-~~~~l~~~ 98 (424)
+....+.+|..-+..+ + . -++..+++++.| |++++|+-..++... ...|.+-|.+ +++-+ ++-.+++|
T Consensus 5 ~ls~~l~gH~~DVr~v---~--~-~~~~~i~s~sRd-~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAV---A--V-TDGVCIISGSRD-GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG 77 (745)
T ss_pred eeEEEeccCccchhee---E--e-cCCeEEeecCCC-CceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence 3445666665544333 3 2 234467777777 999999986665443 2335555555 77765 55569999
Q ss_pred cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
+.|..+.+|.+.+..+...+++|...|.|+....++. +++||.|.++++|.... +...+.+|+..|
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-------------l~~~l~gH~asV 143 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-------------LVYSLQGHTASV 143 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-------------hhcccCCcchhe
Confidence 9999999999999999999999999999999887776 99999999999998743 344589999999
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
++++.-|. +.++||+.|++|++|.- ++.++.+. |.+.|+.+++-|++. |++++.||.|++|++..
T Consensus 144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-------- 209 (745)
T KOG0301|consen 144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-------- 209 (745)
T ss_pred eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC--------
Confidence 99999888 48999999999999985 77788887 999999999988765 77889999999999965
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i 336 (424)
..+.++.+|..-|.+++... +..++++++|++++||+.. ++.+.+......|+++.+-++| -|++|+.||.||+
T Consensus 210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrV 284 (745)
T KOG0301|consen 210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRV 284 (745)
T ss_pred --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEE
Confidence 56888999999999999656 9999999999999999976 8888888767799999999888 4678889999999
Q ss_pred ccCCCC
Q 014475 337 SRRHGS 342 (424)
Q Consensus 337 w~~~~~ 342 (424)
|.....
T Consensus 285 fT~~k~ 290 (745)
T KOG0301|consen 285 FTVDKD 290 (745)
T ss_pred EEeccc
Confidence 988744
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=4.5e-27 Score=208.23 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=211.3
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
|.++++++ .|+.|++||+.+++.+..+..+.. +..++ |+|+++.+++++.+++.|++||..+++.........
T Consensus 1 ~~~~~s~~-~d~~v~~~d~~t~~~~~~~~~~~~----~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 1 EKAYVSNE-KDNTISVIDTATLEVTRTFPVGQR----PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred CcEEEEec-CCCEEEEEECCCCceEEEEECCCC----CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 45788999 999999999999999888875432 34566 999999875544344999999998877654333334
Q ss_pred CeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-cEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~ 159 (424)
.+..++|+|+++.++++ ..++.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||.+++.
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---- 148 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---- 148 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe----
Confidence 46788999999977655 5689999999998877776653 34468899999999999988775 46677885421
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceeeeeecC--------cceeEEEECCCC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIVFP--------SVIDAIALDPAE 230 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~ 230 (424)
...... .......+.|++++ ..++ ++..++.|++||+++++.+..+... .....++++|++
T Consensus 149 -------~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 149 -------IVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred -------EEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 111111 22345678899988 5664 5556999999999998877766421 123468899999
Q ss_pred CEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCCCcEEEEEe
Q 014475 231 HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 231 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~~~~~~ 307 (424)
++++++ ..++.+.+||.++.. ..... .+...+.+++|+| +++|+++ +.+|.|++||+++++++..++
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYE---------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCc---------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 986554 456789999998753 23222 2445789999999 8888876 568999999999999999998
Q ss_pred ccCCCeeEEEEEe
Q 014475 308 LAKGPVNNILVVR 320 (424)
Q Consensus 308 ~~~~~v~~l~~s~ 320 (424)
.. ...+.++++|
T Consensus 289 ~~-~~~~~~~~~~ 300 (300)
T TIGR03866 289 VG-RLPWGVVVRP 300 (300)
T ss_pred cc-cccceeEeCC
Confidence 65 4448888765
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=213.75 Aligned_cols=243 Identities=18% Similarity=0.299 Sum_probs=204.9
Q ss_pred CCCCeeEEEECCCCCE-EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 79 PAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
....|.+++|+|...+ +|+++ .-.+.||+..+....+.+......+.++.|..||++|++|...|.|++||+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---- 99 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---- 99 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----
Confidence 3578999999995443 55544 45799999988888888888889999999999999999999999999999633
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC-CCEEEE
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA-EHVFYA 235 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~l~~ 235 (424)
...+..+.+|+.++..+.|+|.+. ..+++|+.|+.+++||+.+......+. |.+.|.+.+|+|. +..+++
T Consensus 100 -------r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 100 -------RVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred -------HHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 445667889999999999999875 788999999999999999888654555 8999999999995 568999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCe
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPV 313 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v 313 (424)
|+.||.|++||++... ..+.++ .|..+|..+.+-| |..+++++ ...|++||+.+|. .+..+..|...|
T Consensus 172 GsYDg~vrl~DtR~~~--------~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLT--------SRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred cCCCceEEEEEeccCC--------ceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE
Confidence 9999999999999863 233333 5999999999999 78999887 5579999999664 455555599999
Q ss_pred eEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+|+.+..++..|++|+-|+.+++|++.+-+.
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEE
Confidence 9999999999999999999999999765443
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.2e-30 Score=215.33 Aligned_cols=247 Identities=22% Similarity=0.295 Sum_probs=217.2
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
..|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.+..++|+.+.|.++++++++++.|+.+++|++.
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-- 249 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-- 249 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc--
Confidence 4578899999999998999999999999999987665 677888889999999999999999999999999999994
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
......++.+|...|+++.|.... ..+++|+.|.++++||+....+.+.+.....+..++.+ ...++
T Consensus 250 ---------~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~ 316 (459)
T KOG0288|consen 250 ---------SLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVI 316 (459)
T ss_pred ---------chhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEec--ceeee
Confidence 455677899999999999998876 55999999999999999999998888877888888876 66788
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC---
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK--- 310 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~--- 310 (424)
+|..|++|++||.+.. .+......+. .|+++..++ +..+.+++.|.++.+.|+++.+....+.+..
T Consensus 317 SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 9999999999999997 4455555554 899999999 8899999999999999999999888877432
Q ss_pred -CCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 311 -GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 311 -~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
..++.+.|||++.|+++||.||.|+||++.++++...+
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 35899999999999999999999999999998875443
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=208.85 Aligned_cols=247 Identities=21% Similarity=0.355 Sum_probs=215.5
Q ss_pred eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----e-------------e-ccccCCeEEEEEccCC
Q 014475 73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----K-------------W-HAHYRAVTCLVFSEDG 134 (424)
Q Consensus 73 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~-------------~-~~~~~~i~~~~~~~~~ 134 (424)
......|.-+|.+++++|++++.++++.+|+|.-|++.+++... . - +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34445688999999999999999999999999999998875331 1 1 2688899999999999
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 214 (424)
++|++|+.|..|.||+.++ ...++.+.+|.+.|.+++|-... ..+++++.|+.+++|++.....+.+
T Consensus 215 kylatgg~d~~v~Iw~~~t-----------~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-----------LEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred cEEEecCCCceEEEecCcc-----------cchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHH
Confidence 9999999999999999966 44567789999999999998877 8899999999999999998877777
Q ss_pred ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEE
Q 014475 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR 293 (424)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~ 293 (424)
+. |+..|..+....-++.+-+|+.|+++++|++... ....+.+|.+.+-|++|-....+++|+.+|.|.
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee----------sqlifrg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE----------SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEecccc----------ceeeeeCCCCCeeeEEEecccceeeccCCceEE
Confidence 66 9999999999999999999999999999999654 244677889999999998889999999999999
Q ss_pred EEeCCCCcEEEEEec-c-----------CCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 294 VWDPITHNIVRMFRL-A-----------KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 294 iwd~~~~~~~~~~~~-~-----------~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+|++...+++.+.+. | +..|++++..|...++++|+.+|.|++|.+..+
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999999887652 2 127899999999999999999999999999876
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=221.07 Aligned_cols=237 Identities=19% Similarity=0.326 Sum_probs=207.6
Q ss_pred EEEEC-CCCCEEEEecCCCcEEEEEccCcc------eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 85 PIAAN-SHGTYIAGGGQSGDIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 85 ~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.+..+ |.+++|++||.||.|++|+..... .+.+++.|...|+.+....+++.|+++|.|-+|++|+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~---- 104 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK---- 104 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc----
Confidence 44444 467889999999999999986442 3667889999999999999999999999999999999965
Q ss_pred hcccccccceEEeecCCcCceeEEEE-EEcCceeEEEEEeCCCcEEEEecCCCc--eeeeee----------cCcceeEE
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVI-GYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV----------FPSVIDAI 224 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~----------~~~~i~~~ 224 (424)
....+..++..|...|.|+++ .++. ..+++|+-|+.|.+||++++. .+..+. +..+|.++
T Consensus 105 -----~~~~c~stir~H~DYVkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 105 -----DNTFCMSTIRTHKDYVKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred -----CcchhHhhhhcccchheeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 223566778899999999999 5555 899999999999999999772 222221 44679999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
+.++.+..++.|+.++.+++||.++. +.+..+++|...|..+..++ |..+++++.||+|++||+...+++
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 99999999999999999999999997 45667889999999999999 999999999999999999999999
Q ss_pred EEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 304 RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 304 ~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
.++..|...|+++..+|+=..+.+|+.||.|..=++++
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999999999999999999999988886
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.3e-28 Score=193.44 Aligned_cols=263 Identities=17% Similarity=0.232 Sum_probs=208.9
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEE
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI 148 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~i 148 (424)
+...|.+-|.++.|.+.|+.+|+++.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 44567888999999999999999999999999997544 45567789999999999965 5889999999999999
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC------ceeeeee------
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG------RLLRNIV------ 216 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~------ 216 (424)
|.-..... +..........++......|+++.|.|..-+-.|++++.||.+|||+.-.. .+...+.
T Consensus 88 WEE~~~~~--~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 88 WEEQEKSE--EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeccccc--ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 97532111 111123445566777889999999999877789999999999999986543 2223332
Q ss_pred --cCcceeEEEECC---CCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--C---C
Q 014475 217 --FPSVIDAIALDP---AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G---D 281 (424)
Q Consensus 217 --~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~---~ 281 (424)
+..+..|+.|+| ...+|++|+.+ +.+.||........ +..+.++.+|..+|+.++|.| | .
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCcee
Confidence 445678999998 45788888876 57888888765321 356778889999999999999 4 4
Q ss_pred EEEEeCCCCcEEEEeCCCC--------------------cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 282 LLISGSEDGMVRVWDPITH--------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+||+++.|| |+||.++.. +.+..+..|+++|+.+.|+-.|..|++.+.||+||+|...-
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999999 999998731 24556778999999999999999999999999999999875
Q ss_pred CCCC
Q 014475 342 SQLP 345 (424)
Q Consensus 342 ~~~~ 345 (424)
....
T Consensus 320 ~n~~ 323 (361)
T KOG2445|consen 320 NNLW 323 (361)
T ss_pred hhhh
Confidence 4443
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-29 Score=207.21 Aligned_cols=269 Identities=20% Similarity=0.281 Sum_probs=211.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
.+|+|+ .||.|+|||+.+.+++.++++|.+.+.++. +.. ..++++|.| .+|+.|.++.+ ..........+
T Consensus 81 ~~aSGs-~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~-----v~~--~~~~tvgdD-KtvK~wk~~~~-p~~tilg~s~~ 150 (433)
T KOG0268|consen 81 TVASGS-CDGEVKIWNLSQRECIRTFKAHEGLVRGIC-----VTQ--TSFFTVGDD-KTVKQWKIDGP-PLHTILGKSVY 150 (433)
T ss_pred hhhccc-cCceEEEEehhhhhhhheeecccCceeeEE-----ecc--cceEEecCC-cceeeeeccCC-cceeeeccccc
Confidence 578999 999999999999999999999887766654 333 667788887 99999998875 33334456677
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
..+.-+..+..++++|. .|.|||.+...++..+.-....|.++.|+|. ...|++|+.|+.|.+||+++..
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~------- 221 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS------- 221 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-------
Confidence 88888888888999886 5999999999999999888889999999994 4567788899999999997632
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
+++... -...-+.++|+|.+ ..++++++|..+..+|++..+. +.... |...+.++.|+|.|+-+++|+.|.
T Consensus 222 ----Pl~KVi-~~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 222 ----PLKKVI-LTMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ----ccceee-eeccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 122111 12344678999965 7899999999999999986543 33333 788999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~ 306 (424)
+|+||..+.+... .+ -...--..|.++.|+- ..++++||.|+.|++|.....+.+..+
T Consensus 295 sIRIf~~~~~~SR-------di-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 295 SIRIFPVNHGHSR-------DI-YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred eEEEeecCCCcch-------hh-hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 9999999886411 00 0111225689999999 999999999999999998765544433
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=210.46 Aligned_cols=269 Identities=17% Similarity=0.259 Sum_probs=209.3
Q ss_pred EEEeecCCCCCceEEEeCCCC----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---
Q 014475 3 LLIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--- 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--- 75 (424)
..|++|+ -|-+|++||+... +..+.+..+.. +.+.++. |++.|..+++.+.. -..+|+|-+..+...
T Consensus 180 aR~~sGs-~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~--ys~Tg~~iLvvsg~-aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 180 ARFVSGS-LDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQ--YSVTGDQILVVSGS-AQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred ceeeecc-ccceEEEEecccccccchhhhccCcccc--cccceee--ecCCCCeEEEEecC-cceeEEccCCceeeeeec
Confidence 4689999 9999999998743 33455555554 4577777 99999988888776 899999987655332
Q ss_pred ----------eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcce-eeee-----ccccCCeEEEEEccCCcEEE
Q 014475 76 ----------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSEDGSFLI 138 (424)
Q Consensus 76 ----------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~~~~i~~~~~~~~~~~l~ 138 (424)
...|...++|.+|+|+ ...+++++.||+++|||+...+. ...+ .+..-+++.++|++++++||
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 2357789999999995 56788999999999999976543 2333 23445789999999999999
Q ss_pred EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeee
Q 014475 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI 215 (424)
Q Consensus 139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~ 215 (424)
+|..||.|.+|+.... ........-..|.. .|+++.|++++ ++|++-+.|+++++||++..+ ++...
T Consensus 334 agc~DGSIQ~W~~~~~--------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSR--------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred hcccCCceeeeecCCc--------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence 9999999999998542 12223344466776 99999999999 999999999999999999754 33333
Q ss_pred e---cCcceeEEEECCCCCEEEEEeC------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475 216 V---FPSVIDAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 216 ~---~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t 285 (424)
. ...+-+.++|+|+.+++++|+. .|.+.+||..+- ..+..+.-....|..+.|+| -+.|..
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhheee
Confidence 2 4456788999999999999863 468999998885 55666665678899999999 777778
Q ss_pred eCCCCcEEEEe
Q 014475 286 GSEDGMVRVWD 296 (424)
Q Consensus 286 ~~~dg~i~iwd 296 (424)
|+.||.+++|-
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 88899998864
No 114
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=7.2e-28 Score=205.88 Aligned_cols=295 Identities=17% Similarity=0.208 Sum_probs=230.0
Q ss_pred CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eee
Q 014475 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKS 77 (424)
Q Consensus 1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~ 77 (424)
||++.+..+ ...++|||+...+....+..+.. ..++..+. |.....+++.....|..+++|.-..+. +. ...
T Consensus 2 qeNl~~aS~--gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~--w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 2 QENLHVAST--GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFN--WQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred Ccceeeecc--CCceEEeecccccCccccccCCC-CCcceeee--ccccceEEEeecCCceeEEEecccCCCCccceeec
Confidence 566555555 35799999988777777755554 44588888 888776444444444899999876552 22 223
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
...+.-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.+...+.+|++++..|.|.|..+.++..
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~- 155 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK- 155 (673)
T ss_pred cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-
Confidence 3344555565555568999999999999999998888888999999999999999999999999999999999966321
Q ss_pred hcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC-CCCEE
Q 014475 158 CESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP-AEHVF 233 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l 233 (424)
...+... ...+.-+.+++... .+|.+++.+|.|.+||+....++..+. |..+...+||+| +..+|
T Consensus 156 ----------tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 156 ----------TTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred ----------ccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 2223322 34456788888764 677889999999999998888777665 889999999999 55677
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCC
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG 311 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~ 311 (424)
++.+.|.+|.+||++... ....+ ....+.+.++|.+ |.+|+.|...|.|..||++. ..++..+..|..
T Consensus 225 vsVG~Dkki~~yD~~s~~---------s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQA---------STDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred EEecccceEEEeeccccc---------cccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 888999999999999753 22222 3457889999999 99999999999999999995 568899999999
Q ss_pred CeeEEEEEecC
Q 014475 312 PVNNILVVRRP 322 (424)
Q Consensus 312 ~v~~l~~s~~~ 322 (424)
.|++++|-|..
T Consensus 295 sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 SVTRVAFQPSP 305 (673)
T ss_pred ceeEEEeeecc
Confidence 99999999875
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=6.2e-28 Score=204.34 Aligned_cols=252 Identities=14% Similarity=0.213 Sum_probs=201.3
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----------eeecCCCCeeEEEECCC-CCEEEEecCCC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSH-GTYIAGGGQSG 102 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 102 (424)
|.+.|.-+. +.|....++++...++.|.|||..+..-. ....|...-..++|++. .-.|++++.|+
T Consensus 123 h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 123 HDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred CCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 444455444 88888888877666699999998743211 33456666788999984 55789999999
Q ss_pred cEEEEEccCcc-------eeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475 103 DIYMWEVASGR-------LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 103 ~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
.|++||+.... ....+.+|...|..++|++ +..+|++++.|+.+.|||.++ ....+.+...+|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---------~~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---------NTSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---------CCCCCccccccc
Confidence 99999996542 3456789999999999999 667899999999999999975 134445667889
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCC
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
...++|++|+|-+. ..||+|+.|++|.+||+|+.. ++..+. |...|.++.|+|. ...|++++.|+.+.+||+..-.
T Consensus 272 ~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999999999875 899999999999999999754 444554 8999999999995 5778889999999999997643
Q ss_pred CCC-----CCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCC
Q 014475 252 PST-----SSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 252 ~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~ 298 (424)
... ......++....||...|..+.|+| .-.+++.++|+.+.||.+.
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 322 1223466778889999999999999 6688889999999999976
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=200.85 Aligned_cols=287 Identities=16% Similarity=0.243 Sum_probs=234.5
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEV 109 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~ 109 (424)
....+|+++. |+|..+.++++|.| |++++|.++...-. -......||.+..|.|+|. .+++++....++.||+
T Consensus 211 ps~~~I~sv~--FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 211 PSHGGITSVQ--FHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCcCCceEEE--ecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 3457899999 99999999999998 99999999865433 2233477999999999999 8999999999999999
Q ss_pred cCcceee--eecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 110 ASGRLLK--KWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 110 ~~~~~~~--~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
.+.+..+ ...++. ..+.....+|++++|+..+..|.|.+....+ ...+..++ -.+.|.+++|+.+
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-----------~eli~s~K-ieG~v~~~~fsSd 355 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-----------KELITSFK-IEGVVSDFTFSSD 355 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-----------hhhhheee-eccEEeeEEEecC
Confidence 8886543 233333 4577888999999999999999999988754 22333333 4678999999988
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeeecCcce--eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
+ +.|++++.+|.|.+||++...+++.+...+.+ +++|.++++.+||+|+..|.|-|||.++...... ++++..
T Consensus 356 s--k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~---PkPik~ 430 (514)
T KOG2055|consen 356 S--KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN---PKPIKT 430 (514)
T ss_pred C--cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC---CCchhh
Confidence 8 88888999999999999999999999866655 5677779999999999999999999776433222 356667
Q ss_pred ecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccC---CCeeEEEEEecCceeeeccCCCceeecc
Q 014475 265 LSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAK---GPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
+..-...|++++|++ ..+|+.++ .+..+++-.+.+......+.... +.|+|++|+|.+-+||.|..+|.+.+|.
T Consensus 431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 777778999999999 88888777 46789999999887777766443 4789999999999999999999999998
Q ss_pred CC
Q 014475 339 RH 340 (424)
Q Consensus 339 ~~ 340 (424)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 75
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-27 Score=208.83 Aligned_cols=260 Identities=16% Similarity=0.274 Sum_probs=212.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEE-ecceeec-CCCccccCCCCceeEEEEECCCCcee-eeecC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC-VGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE-VKSLP 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~ 79 (424)
..+++++ .||++++|+-..++.+.+ ....+|.+-+.+ ++ |.+ ++-.+++++.| ++|.+|...+.++. ....|
T Consensus 26 ~~i~s~s-Rd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~D-~~i~v~~~~~~~P~~~LkgH 100 (745)
T KOG0301|consen 26 VCIISGS-RDGTVKVWAKKGKQYLET-HAFEGPKGFIANSIC--YAESDKGRLVVGGMD-TTIIVFKLSQAEPLYTLKGH 100 (745)
T ss_pred eEEeecC-CCCceeeeeccCcccccc-eecccCcceeeccce--eccccCcceEeeccc-ceEEEEecCCCCchhhhhcc
Confidence 4688899 999999999765554432 122334344444 44 654 44558888887 99999999887765 55789
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|.+++...++. +++|+.|.++++|- .+++...+++|...|+++...|++ .++||+.|.+|++|.-.
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~------- 169 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG------- 169 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------
Confidence 99999999888887 99999999999996 467777899999999999999977 79999999999999763
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
..++++.+|.+-|+.+++-++ ..|++++.||.|++|++ +++.+..+. |..-+.++...+++..+++++.
T Consensus 170 ------~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 170 ------TLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ------chhhhhccchhheeeeEEecC---CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 367889999999999999988 47999999999999999 566666655 9999999998899999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~ 299 (424)
|+++++|+... +.+.+.-....|.++.+-++.-+++|+.||.||||....
T Consensus 240 DrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecCc-----------eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999873 344444344578888887766678888999999998763
No 118
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=8.5e-27 Score=206.93 Aligned_cols=319 Identities=18% Similarity=0.178 Sum_probs=250.0
Q ss_pred eEEEeecCCCCCceEEEeCCCCceE---------------------EEee-------CCCCCCCceEEecceeecCCCcc
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQ---------------------LRYK-------SCASPPHGLACVGQRFLASSQLR 53 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~---------------------~~~~-------~~~~~~~~v~~~~~~~~~~~~~l 53 (424)
+.+||+++ +|..||||.+.-+... .++. -..+|.+-|.++. |+|.+..|
T Consensus 206 ~~~laS~S-QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~--W~p~~~~L 282 (764)
T KOG1063|consen 206 DLLLASSS-QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW--WHPEGLDL 282 (764)
T ss_pred cEEEEecC-CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE--Eccchhhh
Confidence 57999999 9999999997644311 1111 1236788899999 99999999
Q ss_pred ccCCCCceeEEEEECCCCcee----eee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeecccc
Q 014475 54 EQPSASSGSILYWSWSKPQVE----VKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHY 122 (424)
Q Consensus 54 ~~~~~~~g~i~vwd~~~~~~~----~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~ 122 (424)
++++.| .++.+|.-++..-. .+. .........-|+|+++.+++-+..|..++|..+.. .....+.+|.
T Consensus 283 LSASaD-ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSASAD-KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecccC-cceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 999998 99999998765322 111 23456889999999999999999999999983332 2344567899
Q ss_pred CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~ 202 (424)
+.|..+.|+|.|.+|++.+.|-+-|+|-.-. . ......+..-+-|.-.++|+++-+.. ..+++|...+.+|
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~------q~~wHEiaRPQiHGyDl~c~~~vn~~--~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-R------QQEWHEIARPQIHGYDLTCLSFVNED--LQFVSGADEKVLR 432 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecccc-c------ccceeeecccccccccceeeehccCC--ceeeecccceeee
Confidence 9999999999999999999999999987641 1 11233444556788899999998854 7899999999999
Q ss_pred EEecCC----------C----------------------cee--------------------------------------
Q 014475 203 VWSLLK----------G----------------------RLL-------------------------------------- 212 (424)
Q Consensus 203 iwd~~~----------~----------------------~~~-------------------------------------- 212 (424)
+|+... + +..
T Consensus 433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~ 512 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN 512 (764)
T ss_pred eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence 998621 0 000
Q ss_pred -------eeeecCcceeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475 213 -------RNIVFPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (424)
Q Consensus 213 -------~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 279 (424)
+.+.|...|.+++.+|+++++++++... .|++|+..+. ..++.+.+|.-.|+.++|+|
T Consensus 513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCC
Confidence 0001333789999999999999988653 5899999885 55668999999999999999
Q ss_pred CCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 280 GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+++|++.+.|.++.+|....... ....+.|..-|+++.|+|++.+++|+|.|++|++|.....
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999998754321 2336789999999999999999999999999999998866
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=210.75 Aligned_cols=276 Identities=17% Similarity=0.265 Sum_probs=222.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeC----------------------------------CCCCCCceEEecceeec
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKS----------------------------------CASPPHGLACVGQRFLA 48 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~ 48 (424)
-.+.|++ .|++|||||++.+..-..++. .-.+..++.+++ .+|
T Consensus 393 ~cF~TCS-sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp 469 (1080)
T KOG1408|consen 393 GCFTTCS-SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSP 469 (1080)
T ss_pred cceeEec-CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECC
Confidence 3578999 999999999986432222110 012445688898 999
Q ss_pred CCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECC---CCCEEEEecCCCcEEEEEccCc-ceeeeeccccC
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYR 123 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~ 123 (424)
+|++||++..- |+++||++...+.. ....|...|.|+.|+. ..++||+++.|..|.|||+... .+++++.+|..
T Consensus 470 ~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 470 DGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred CcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 99999999887 99999999877655 4456999999999985 4678999999999999999644 67788999999
Q ss_pred CeEEEEEccCC--cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 124 AVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 124 ~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
.|+++.|..+| ..+++++.|..|. |+...... ........+-...+..+.++++.|.. +++++++.|..|
T Consensus 549 sITsvKFa~~gln~~MiscGADksim-Fr~~qk~~-----~g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni 620 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIM-FRVNQKAS-----SGRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI 620 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhh-eehhcccc-----CceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence 99999998876 6789999997664 44322000 00011111122234578889998888 899999999999
Q ss_pred EEEecCCCceeeeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475 202 KVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (424)
Q Consensus 202 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (424)
+|||+.+++..+.|+ +.+..-.+...|.|.++++.+.|.++.++|.-++ +++..+.+|...|+.+.|
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence 999999999999997 5577888999999999999999999999999997 778899999999999999
Q ss_pred cC-CCEEEEeCCCCcEEEEeCCC
Q 014475 278 ST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 278 ~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
.+ -+.|++.+.||.|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99 88999999999999999754
No 120
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.4e-25 Score=198.68 Aligned_cols=271 Identities=12% Similarity=0.124 Sum_probs=200.6
Q ss_pred CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475 51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV 129 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 129 (424)
..+++++.+ +.|++||..+++..........+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d-~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKD-NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCC-CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 345566666 99999999887765554444557889999999876 5667889999999999888777765443 57789
Q ss_pred EccCCcEEEEe-eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecC
Q 014475 130 FSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL 207 (424)
Q Consensus 130 ~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~ 207 (424)
|+|+++.++++ +.++.+++||+++. ..+..+. +...+.+++|+|++ ..+++++.++ .+.+||.+
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-----------~~~~~~~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-----------KVLAEIP-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-----------eEEeEee-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCC
Confidence 99999877554 56899999999652 2233333 22346789999988 7888877765 46778998
Q ss_pred CCceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc-----c--CcCeEEEEecC
Q 014475 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD-----H--SKAVTCLAYST 279 (424)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~--~~~i~~~~~~~ 279 (424)
+++..........+..++|+|+++++++++ .++.+++||+++... +..+.. + ......++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECC
Confidence 887776665556678899999999886554 689999999988632 222211 1 11234688999
Q ss_pred -CCEEEE-eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec-cCCCceeeccCCCCCCCCC
Q 014475 280 -GDLLIS-GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 280 -~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~ 347 (424)
+++++. .+.++.+.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+.+....
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 776444 4557789999999988877664 45678999999999999876 5799999999998765433
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-28 Score=216.11 Aligned_cols=275 Identities=17% Similarity=0.202 Sum_probs=219.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecC--------CCCeeEEEECC-CCCEEEEecCCCcEEEEEccC---cc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR 113 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~--------~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~---~~ 113 (424)
..++-..++.+|. ..++|+.+..........+ .-.+..+.|+. +.++||+++..|.|.+||+.. .+
T Consensus 47 ~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk 124 (839)
T KOG0269|consen 47 VNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK 124 (839)
T ss_pred ecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence 5677778888887 5888888765432221111 12455677775 578999999999999999987 56
Q ss_pred eeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 114 LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
.+..+..|...++++.|++ ...+|++|++||.|++||++. .....++.+....|.++.|+|... +.|
T Consensus 125 ~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------~~S~~t~~~nSESiRDV~fsp~~~-~~F 192 (839)
T KOG0269|consen 125 LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------KKSKSTFRSNSESIRDVKFSPGYG-NKF 192 (839)
T ss_pred hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------ccccccccccchhhhceeeccCCC-ceE
Confidence 6778899999999999998 667899999999999999965 333455667888999999999864 899
Q ss_pred EEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 193 VSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++...|.+++||++... +...+. |.+++.++.|+|++.+||+|+.|+.|+|||+..... ....++ ....
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tI-nTia 264 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTI-NTIA 264 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEE-eecc
Confidence 999999999999998754 333343 999999999999999999999999999999987542 222222 2357
Q ss_pred CeEEEEecC--CCEEEEeC--CCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCCCC
Q 014475 271 AVTCLAYST--GDLLISGS--EDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 271 ~i~~~~~~~--~~~l~t~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+|.+++|-| ...|++++ .|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||++..-..+..
T Consensus 265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 899999999 66788876 5788999999865 45678889999999999976 5568899999999887666544
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.4e-26 Score=183.48 Aligned_cols=289 Identities=15% Similarity=0.189 Sum_probs=217.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceE-------E-----EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQ-------L-----RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK 70 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~-------~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~ 70 (424)
-|+++|+ .||.|.|||++..... + .-+...+|.-+|..+- |-|-..-+++.++-|.+++|||..+
T Consensus 57 rymlSGg-adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~--WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 57 RYMLSGG-ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI--WYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred eEEeecC-CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE--EeeecCceeecccccceEEEeeccc
Confidence 4789999 9999999999864311 1 1122234556677776 8876665666655569999999999
Q ss_pred CceeeeecCCCCeeEEEECCC---CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcE
Q 014475 71 PQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCV 146 (424)
Q Consensus 71 ~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i 146 (424)
.+.......++.|.+-++||- ..++|+|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++|+.||.|
T Consensus 134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 988888888999999999983 557888899999999999999999999999999999999997665 7799999999
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc---ee-eeeecCccee
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR---LL-RNIVFPSVID 222 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~---~~-~~~~~~~~i~ 222 (424)
++||++.. . |..++.|..+++ .+ ....|.+.++
T Consensus 214 rlWDiRra----------s---------------------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 214 RLWDIRRA----------S---------------------------------GCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EEEEeecc----------c---------------------------------ceeEEeecccCccCccccccccccceee
Confidence 99999541 0 112222222211 11 2334788999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcE
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
.++|..++.++++.+.|.++++|+...+.....++....-..-. |. .+. +.-.....++---.++.+.++++-++..
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~-~~~-~~~~~s~vfv~~p~~~~lall~~~sgs~ 327 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SF-AVH-IQSMDSDVFVLFPNDGSLALLNLLEGSF 327 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cc-eEE-EeecccceEEEEecCCeEEEEEccCceE
Confidence 99999999999999999999999999887544443322211111 11 111 2211133444444568999999999999
Q ss_pred EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 303 VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 303 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++.+..|-..|.+.++.|+=+...+|+.|+.+..|...
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 99999998899999999999999999999999999873
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=6.5e-27 Score=205.82 Aligned_cols=321 Identities=17% Similarity=0.270 Sum_probs=225.9
Q ss_pred CeEEEeecCCCCCceEEEeCCCCceE---EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---
Q 014475 1 MELLIASSSVADTGIGCWDLESGAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--- 74 (424)
Q Consensus 1 ~e~~lat~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--- 74 (424)
+|.+||.+. .||.|.++|.++..-. +.|+....|.+.|..+. |.|....|++++.| .++++||+...+..
T Consensus 63 ~eHiLavad-E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wapge~~lVsasGD-sT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 63 KEHILAVAD-EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAPGESLLVSASGD-STIRPWDVKTSRLVGGR 138 (720)
T ss_pred ccceEEEec-CCCceeeecchhhhcchhhhhhcccccccceeEeec--cCCCceeEEEccCC-ceeeeeeeccceeecce
Confidence 578999999 9999999998754322 23555667788899998 99966677777777 99999999987765
Q ss_pred eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcc--------------------e-------eeeeccccCCeE
Q 014475 75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGR--------------------L-------LKKWHAHYRAVT 126 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~--------------------~-------~~~~~~~~~~i~ 126 (424)
....|...|.+++|.| |...|++|+.||.|.|||++-.. . +.....+...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 3467999999999999 56788999999999999996331 0 111123444455
Q ss_pred E---EEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCC---cCceeEEEEEEcCceeEEEEEeCCC
Q 014475 127 C---LVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGH---TLRITDIVIGYGGVSATIVSASEDR 199 (424)
Q Consensus 127 ~---~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~~~d~ 199 (424)
+ +.+..|...|++++. |+.|++||+++.+......... ...+..| ...+.++.....| .+|++.+.|+
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~---~~~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~ 293 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG---SDKYPTHSKRSVGQVNLILDSSG--TYLFASCTDN 293 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc---ccCccCcccceeeeEEEEecCCC--CeEEEEecCC
Confidence 5 555568889999888 9999999998865443322221 2222223 4456666666655 7888888899
Q ss_pred cEEEEecCCCce--eeeeec---CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475 200 TCKVWSLLKGRL--LRNIVF---PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (424)
Q Consensus 200 ~v~iwd~~~~~~--~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (424)
.|.+||+.+-.. +..+.+ ...-..-..+|++.++++|+.|...++|.+.... .....+.+|.-.|++
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTT 365 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEE
Confidence 999999986432 222221 1112233568999999999999999999999875 556678899999999
Q ss_pred EEecC--CCEEEEeCCCCcEEEEeCCCCc--------------EEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 275 LAYST--GDLLISGSEDGMVRVWDPITHN--------------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 275 ~~~~~--~~~l~t~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
++|.| -.-++++++|..+++|++..+- ....+++|.-.+..+.++-.+.+..-- .+..++|.
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence 99998 5567788999999999986542 223445555555555555433222221 34455554
Q ss_pred CC
Q 014475 339 RH 340 (424)
Q Consensus 339 ~~ 340 (424)
..
T Consensus 444 sP 445 (720)
T KOG0321|consen 444 SP 445 (720)
T ss_pred Cc
Confidence 43
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-26 Score=216.55 Aligned_cols=259 Identities=21% Similarity=0.277 Sum_probs=213.5
Q ss_pred ecCCCCeeEEEECCCCCEEEEec--CCCcEEEEEccC------------cceeeeeccccCCeEEEEEccCCcEEEEeeC
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEVAS------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~ 142 (424)
..++..|.+++.+|++..+|+|+ .||.++||+.+. .+.+.....|.+.|+|+.|+|||++||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34566799999999999999999 899999998742 1334556789999999999999999999999
Q ss_pred CCcEEEEeCCcc--cc-----hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 143 DGCVRIWSLLTV--FE-----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 143 dg~i~iwd~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
|+.|.+|..... .. .........+....+.+|...|.+++|+|++ .++++++.|++|.+||.++.+.+..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeee
Confidence 999999998731 00 1122234556778889999999999999988 99999999999999999999988888
Q ss_pred e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEEecC-CCEEEEeC
Q 014475 216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~-~~~l~t~~ 287 (424)
. |...|..+.|+|-|++|++-+.|++|++|++.+- .....+.. -......+.|+| |.+|++..
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw---------~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW---------GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccc---------eeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 8 9999999999999999999999999999997663 22222222 234578899999 99999874
Q ss_pred C----CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-----cCc------------eeeeccCCCceeeccCCCCCCCC
Q 014475 288 E----DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-----RPL------------YLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 288 ~----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-----~~~------------~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
. -.++.|.+-.+.+.-..+-+|.+++.++.|+| ..+ .+|+||.|++|-+|.....++.-
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 2 34689999888888899999999999999997 111 57899999999999997665543
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.8e-25 Score=189.07 Aligned_cols=324 Identities=17% Similarity=0.201 Sum_probs=248.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCC-CceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPP-HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~ 80 (424)
+++++.+ .|.+..|+.+.+...++......+. .-|.|+. |.++|+. +++.++ |.|.||+..+.+... ...|.
T Consensus 214 nliit~G--k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~--F~engdv-iTgDS~-G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 214 NLIITCG--KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT--FLENGDV-ITGDSG-GNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred cEEEEeC--CceEEEEEccCCceEEEeeccccccceEEEEEE--EcCCCCE-EeecCC-ceEEEEeCCCceEEeEeeecC
Confidence 5677777 6899999999988877643333222 5688888 9999984 566665 999999997766542 23799
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-----------------------------------------eeec
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------------------------------------KKWH 119 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------------~~~~ 119 (424)
+.|.+++.-.+|.+|- |+.|..|..||-. -+.+ ....
T Consensus 288 ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 288 GGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred CceEEEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE
Confidence 9999999999998665 9999999999832 1100 0123
Q ss_pred cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (424)
Q Consensus 120 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~ 199 (424)
+|......++.+|+.+++++++.|+.+++|+-. +....+ .-..+..++.|+|.+ .++.|+..|
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-----------k~~wt~---~~~d~~~~~~fhpsg---~va~Gt~~G 428 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-----------KLEWTK---IIEDPAECADFHPSG---VVAVGTATG 428 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEccCC-----------ceeEEE---EecCceeEeeccCcc---eEEEeeccc
Confidence 677888899999999999999999999999931 122221 234678899999985 899999999
Q ss_pred cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 200 ~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
...+.|.++...+.......+++++.++|+|.+||+|+.|+.|++|.+..... +....-+-+..+|+.+.|++
T Consensus 429 ~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC
Confidence 99999999977776666789999999999999999999999999999987642 22222233448999999999
Q ss_pred -CCEEEEeCCCCcEEEEeCCCCcEEEEEe------------------ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 280 -GDLLISGSEDGMVRVWDPITHNIVRMFR------------------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 280 -~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++++.+-+.|-.|..|....-+.+...+ .+...|..++-+.+.+++|+|.+.|.|+++..+
T Consensus 502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999999999999544322221111 344467778888899999999999999999999
Q ss_pred CCCCCCCccccccccccc
Q 014475 341 GSQLPPPLDKYVTSADED 358 (424)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ 358 (424)
-.++..+..++.....-.
T Consensus 582 c~s~rA~~he~~ghs~~v 599 (626)
T KOG2106|consen 582 CSSPRAPSHEYGGHSSHV 599 (626)
T ss_pred cCCCcccceeecccccee
Confidence 777777766665555433
No 126
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=5e-27 Score=206.54 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=109.9
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEe
Q 014475 220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd 296 (424)
.|+.+.|+| |...|++++.||.|++|.+..+...... ..+-..+..|...|+++.|+| .+.|++++.|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~--~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE--MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCccc--CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 577889999 7788999999999999999887543332 245567888999999999999 89999999999999999
Q ss_pred CCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 297 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+.+++....+.+|.+.|..++|||||+.+|+.+.||++++++.+..+.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 999999999999999999999999999999999999999999886643
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.5e-28 Score=217.58 Aligned_cols=246 Identities=20% Similarity=0.350 Sum_probs=220.2
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
-.+++|+.+.. ..|...|.++..-..++.+++|+.|-.+.+|.+..-..+..+.+|..+|.++.|+++..+|++|
T Consensus 14 t~Lr~~~~~~~-----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag 88 (825)
T KOG0267|consen 14 TKLRVWDTREF-----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG 88 (825)
T ss_pred eccccccchhh-----hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc
Confidence 56667775432 3467788888887788999999999999999998888888899999999999999999999999
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCc
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS 219 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~ 219 (424)
+.+|+|++||++. ...++++.+|...+.++.|+|-+ .+++.|+.|+.+++||++...+...+. |..
T Consensus 89 sasgtiK~wDlee-----------Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 89 SASGTIKVWDLEE-----------AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ccCCceeeeehhh-----------hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999954 44567899999999999999998 889999999999999999887888777 888
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
.+..+.|+|+|++++.|+.|..+++||...+ +....+..|.+.+..+.|+| .-++++|+.|+++++||++
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 8999999999999999999999999999987 66788999999999999999 8889999999999999999
Q ss_pred CCcEEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
+.+.+.........|.++.|+|++..+++|-.+..
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999998888899999999999999888865543
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-24 Score=167.91 Aligned_cols=272 Identities=17% Similarity=0.291 Sum_probs=214.7
Q ss_pred EEeecCCCCCceEEEeCCC------Cc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC
Q 014475 4 LIASSSVADTGIGCWDLES------GA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~------~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~ 71 (424)
+.|.|+ ..++.+|..... +. +...++...-|...|.|.+ |+|.|+++++++.| ++|++..++..
T Consensus 46 lyavgs-nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~geliatgsnd-k~ik~l~fn~d 121 (350)
T KOG0641|consen 46 LYAVGS-NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGELIATGSND-KTIKVLPFNAD 121 (350)
T ss_pred eEEecc-CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCeEEecCCC-ceEEEEecccc
Confidence 467788 888888876432 11 1112233344667899999 99999999999998 99999887654
Q ss_pred ce------eeeecCCCCeeEEEECCC----CCEEEEec-CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 72 QV------EVKSLPAEPIKPIAANSH----GTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 72 ~~------~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
.. .....|.+.|..++|-.+ +.+|++++ .|..|++-|..+|+....+.+|.+.|.++- +-++-++++|
T Consensus 122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sg 200 (350)
T KOG0641|consen 122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASG 200 (350)
T ss_pred cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEcc
Confidence 32 233458899999999643 56777765 466788889999999999999999998864 2358899999
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeec----C---CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFT----G---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR 213 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~---~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 213 (424)
+.|.+|++||++-. ..+.++. . ..+.|.++++.|.+ ++|++|-.|....+||++.+++++
T Consensus 201 sqdktirfwdlrv~-----------~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVN-----------SCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred CCCceEEEEeeecc-----------ceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEEEeeCCceee
Confidence 99999999999642 2222221 1 23678999999998 999999999999999999999999
Q ss_pred eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475 214 NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM 291 (424)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~ 291 (424)
.+. |...|.++.|+|...++++++.|..|++-|++...... -++.....|...+..+.|+| .-.+++.+.|.+
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 887 88999999999999999999999999999998743111 23445567999999999999 778899999999
Q ss_pred EEEEeCC
Q 014475 292 VRVWDPI 298 (424)
Q Consensus 292 i~iwd~~ 298 (424)
+.+|-+.
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999764
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7e-26 Score=207.36 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=223.3
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCC-ceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
.|..+.+.++ |.|+|..+.+++.+ |.|++|+.... +...... +...|.+++.. +.+|++|+.+++|.+|.+.+
T Consensus 11 aht~G~t~i~--~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLIC--YDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEE--EcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 3556677888 99999999999998 99999998765 3322222 77788888765 55899999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
++.-..+....-++++++|+.+|++++.||.|-.|++-++.+ ......+.+|..+|.++.++|.+ ++
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-----------~s~~~~lrgh~apVl~l~~~p~~--~f 152 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-----------SSQEKVLRGHDAPVLQLSYDPKG--NF 152 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-----------cchheeecccCCceeeeeEcCCC--CE
Confidence 887777777778999999999999999999999999999955 33456789999999999999999 99
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
|++.+.||.|++||+.++.+...+. ....+..++|+|++..+++...|+.|.+|+..... ..
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we---------~~ 223 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE---------LQ 223 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---------eh
Confidence 9999999999999999988776664 13456788999999999999999999999998864 33
Q ss_pred eeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 263 GSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 263 ~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
..+. .+...+..++|+| |.|||+++.||.|.|||..+-.. ......|.+++|.|+..-|-.-...|...+|
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 3332 3445599999999 99999999999999999998222 2234689999999998877655555554444
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=180.45 Aligned_cols=232 Identities=18% Similarity=0.268 Sum_probs=185.9
Q ss_pred EEEeecCCCCCceEEEeCCCCce---EEEeeCCCCCCCceEEecceeec--CCCccccCCCCceeEEEEECCCCcee---
Q 014475 3 LLIASSSVADTGIGCWDLESGAE---QLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE--- 74 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~~~~--- 74 (424)
.+|||++ .|++|+|+.++.... +.++.+|. .+|.-++ |.. .|..||+++.| |.|.||.-++++..
T Consensus 24 krlATcs-SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~--wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 24 KRLATCS-SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVA--WAHPKFGTILASCSYD-GKVIIWKEENGRWTKAY 96 (299)
T ss_pred ceeeeec-CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEe--ecccccCcEeeEeecC-ceEEEEecCCCchhhhh
Confidence 5799999 999999999987654 55566555 5566666 665 79999999998 99999998887543
Q ss_pred eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccC---C-----------c
Q 014475 75 VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSED---G-----------S 135 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~---~-----------~ 135 (424)
....|...|++++|.|. |-.|++++.||.|.|.+.++. ...+....|.-.|++++|.|- | +
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 33457899999999995 778999999999999998755 223445789999999999984 4 5
Q ss_pred EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC--ceeEEEEEeCCCcEEEEecCCCce--
Q 014475 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRL-- 211 (424)
Q Consensus 136 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~-- 211 (424)
.|++|+.|..|+||+..+ ........+.+|.+.|++++|.|.- ....|++++.||++.||..+....
T Consensus 177 rlvSgGcDn~VkiW~~~~---------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDS---------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred eeeccCCccceeeeecCC---------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 699999999999999976 3344455689999999999999863 226799999999999998763211
Q ss_pred eeee--ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 212 LRNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 212 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
..++ ..+..+..+.|++.|+.|++++.|+.+.+|.-+..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 1111 16788999999999999999999999999976554
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=181.96 Aligned_cols=290 Identities=12% Similarity=0.113 Sum_probs=217.2
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
..|+. |++.|.+||+|+.+ |.|.+||+.+..+. ....|..+|.+++||+||+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~--Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQ--FSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEE--eccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 56666 99999999999998 99999999987754 4467899999999999999999999999999999999999888
Q ss_pred eccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--CcCceeEEEEEEcCceeEEEE
Q 014475 118 WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~ 194 (424)
++ ..++|+...|+|. .+.+++.-.+..-.+-++.... ...+..-.. -.....+..|.+.| +++++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---------h~~Lp~d~d~dln~sas~~~fdr~g--~yIit 170 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---------HSVLPKDDDGDLNSSASHGVFDRRG--KYIIT 170 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---------eeeccCCCccccccccccccccCCC--CEEEE
Confidence 87 6789999999993 3334433334445555553311 111110000 11111222466666 99999
Q ss_pred EeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCc
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSK 270 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~ 270 (424)
|...|.+.++|..+.+++..+.. ...|..+.++..|+.|++-+.|..|+.|+++.-..........+...++. ...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 99999999999999999988873 36899999999999999999999999999875322211111122222221 123
Q ss_pred CeEEEEecC-CCEEEEeCC-CCcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 271 AVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
.=.+++|+. |.+++.++. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|.....+.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 345677888 888888874 4569999999999999999888 467889999998888887 789999999875443
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3.1e-26 Score=196.30 Aligned_cols=264 Identities=16% Similarity=0.242 Sum_probs=217.1
Q ss_pred EEeecCCCCCceEEEeCCCC---ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-
Q 014475 4 LIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP- 79 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~- 79 (424)
.+.||+ .|-|+|||+... ..+..+. +....+.+..+. .+|||+.|+++|.- .++.|||+..+...++...
T Consensus 433 hVyTgG--kgcVKVWdis~pg~k~PvsqLd-cl~rdnyiRSck--L~pdgrtLivGGea-stlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 433 HVYTGG--KGCVKVWDISQPGNKSPVSQLD-CLNRDNYIRSCK--LLPDGRTLIVGGEA-STLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred eeEecC--CCeEEEeeccCCCCCCcccccc-ccCcccceeeeE--ecCCCceEEecccc-ceeeeeeccCCCcchhhhcC
Confidence 456777 688999998643 2233332 333556677777 99999999999996 9999999998876655432
Q ss_pred --CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 80 --AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 80 --~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.-.+.+++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.||..+++|..|-+|+-|.+|+.||++++.+.
T Consensus 507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 346889999999999999999999999999999999999999999999999999999999999999999999774321
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
.+ ....+.|.++-.+|.+ .+++.|-+++.+.+......+......|...|.++.|.+.|+++++.+
T Consensus 587 qq------------hdF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 587 QQ------------HDFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hh------------hhhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence 11 1235688899999998 899999999999999877666555555899999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
.|+.+-.|....+. .+...+ ....|.++.++. +++++||+.|....+|.+
T Consensus 653 kDnlLnawrtPyGa---------siFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGA---------SIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCcccc---------ceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999998874 222222 456789999888 999999999988888864
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-24 Score=192.39 Aligned_cols=278 Identities=19% Similarity=0.243 Sum_probs=218.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~ 81 (424)
..||.+. .||.|.+||+..+-..... -+....+.+..++ |.+ +..|.+.+.+ |.|.-||+.+.+...... ..+
T Consensus 38 ~~lAvsR-t~g~IEiwN~~~~w~~~~v-i~g~~drsIE~L~--W~e-~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg 111 (691)
T KOG2048|consen 38 NQLAVSR-TDGNIEIWNLSNNWFLEPV-IHGPEDRSIESLA--WAE-GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGG 111 (691)
T ss_pred Cceeeec-cCCcEEEEccCCCceeeEE-EecCCCCceeeEE--Ecc-CCeEEeecCC-ceEEEEecccCceeEEecCCCc
Confidence 4588899 9999999999976544332 2335668899999 985 4556666666 999999999988776654 578
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.|++++.+|.+..++.|+.||.+..++...++... .+....+.|.++.|+|++..+++|+.||.|++||..++.....
T Consensus 112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence 99999999999999999999988888877765543 3445568999999999999999999999999999976432110
Q ss_pred ccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475 160 SQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (424)
. ...+-.+. ....-|+++.+-.+ ..+++|..-|+|.+||...+.+++.+. |...|.+++..+++..+++++
T Consensus 192 ~----~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 192 I----TMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred e----eecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 0 00011111 13445777777766 589999999999999999999998888 899999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~ 299 (424)
.|+.|..|...+.... +........|...|.+++..+ ..+++|+.|..+.+-..+.
T Consensus 265 vd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~-~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIE-NALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCCceEEEEecCCccc-----eeeeccccCCcccceeeeeec-ceEEecceeeEEEEccccc
Confidence 9999999998876531 334445567888999999875 5999999999998876554
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7e-25 Score=194.47 Aligned_cols=280 Identities=18% Similarity=0.225 Sum_probs=230.6
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
-+..|.+++ |+...+.||++-.+ |.|.+|++...-..... .....|.+++|++. ..|++.+.+|.|.-||+.+
T Consensus 24 ~Ps~I~slA--~s~kS~~lAvsRt~-g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 24 KPSEIVSLA--YSHKSNQLAVSRTD-GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eccceEEEE--EeccCCceeeeccC-CcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEeccc
Confidence 357799999 99999999998887 99999999876544333 34678999999955 4577778899999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
++....+....+.|++++.+|.+..++.|+.||.+..++... ........+...++++.++.|++++ ..
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I~~~r~l~rq~sRvLslsw~~~~--~~ 168 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKITYKRSLMRQKSRVLSLSWNPTG--TK 168 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceEEEEeecccccceEEEEEecCCc--cE
Confidence 999999999999999999999999999999999877777754 2333344455567999999999998 78
Q ss_pred EEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
+++|+.||.|++||..++..+.... .+.-|.++.+- ....+++|...|.|.+||...+ ..+
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g---------TLi 238 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG---------TLI 238 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc---------chh
Confidence 9999999999999999988776332 12235566666 4456899999999999999997 667
Q ss_pred eeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 263 ~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
+.+..|.+.|.+++..+ ++.+++++.|+.|.-+...+.+. ......|...|.+++..++ .|++|+.|..+.+=
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 78889999999999999 89999999999999988776543 2334578889999999987 89999999998877
Q ss_pred cCCC
Q 014475 338 RRHG 341 (424)
Q Consensus 338 ~~~~ 341 (424)
....
T Consensus 317 ~s~~ 320 (691)
T KOG2048|consen 317 SSRE 320 (691)
T ss_pred cccc
Confidence 6654
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=190.12 Aligned_cols=268 Identities=15% Similarity=0.223 Sum_probs=210.5
Q ss_pred CCceeEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCC
Q 014475 58 ASSGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG 134 (424)
Q Consensus 58 ~~~g~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 134 (424)
.+...+.+||+.++............ .++..- .+.+++++.. ...|.+|.+...........-.++|.++.-+|+|
T Consensus 15 ~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred CCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence 34377999999998876554433111 111111 2356666643 4569999987665555444456889999999999
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-------
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL------- 207 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~------- 207 (424)
.+++.|+..|.|++|.+.+ ...+..+.+|-..|+++.|+.++ .+|++|+.||.|.+|++.
T Consensus 94 ~~l~ag~i~g~lYlWelss-----------G~LL~v~~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSS-----------GILLNVLSAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred eEEEeecccCcEEEEEecc-----------ccHHHHHHhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEeeccccc
Confidence 9999998999999999965 44566778999999999999998 999999999999999863
Q ss_pred --CCceeeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475 208 --KGRLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (424)
Q Consensus 208 --~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 281 (424)
+.+++..+. |.-+|+.+...+. ..++++++.|.++++||+..+. .+..+ .....+.+++.+| +.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---------LLlti-~fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---------LLLTI-TFPSSIKAVALDPAER 230 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---------eeEEE-ecCCcceeEEEccccc
Confidence 335566665 7889999988775 5689999999999999999973 33333 3567899999999 99
Q ss_pred EEEEeCCCCcEEEEeCCC----------------CcEEEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 282 LLISGSEDGMVRVWDPIT----------------HNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.+..|+++|.|.+.++.. +..+..+.+|.+ +|++++.+-||..|++|+.||.+++||+...+
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 999999999999987653 234566779988 99999999999999999999999999999877
Q ss_pred CCCCcc
Q 014475 344 LPPPLD 349 (424)
Q Consensus 344 ~~~~~~ 349 (424)
+...+.
T Consensus 311 ~iRtl~ 316 (476)
T KOG0646|consen 311 CIRTLQ 316 (476)
T ss_pred HHHHHh
Confidence 755443
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.3e-27 Score=208.31 Aligned_cols=246 Identities=22% Similarity=0.442 Sum_probs=213.7
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEEC
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAAN 89 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s 89 (424)
.+-.+++||.+... .|...+.++. .-..++.+++||.+ ..+-+|.......... ..|..+|.++.|+
T Consensus 12 ~~t~Lr~~~~~~~~---------~hsaav~~lk--~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 12 RATKLRVWDTREFV---------AHSAAVGCLK--IRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred eeeccccccchhhh---------hhhhhhceee--eeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeecC
Confidence 35567788865321 2334455555 55677888888887 8899999987766554 7899999999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.++++|+.|+.+++||++ +..+.+
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-----------k~Gc~~ 148 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-----------KKGCSH 148 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh-----------ccCcee
Confidence 999999999999999999999999999999999999999999999999999999999999995 345678
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
.+.+|...+..+.|+|+| .+++.+++|.++++||...|+....|. |...+..+.++|..-+++.|+.|+++++||++
T Consensus 149 ~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 149 TYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 889999999999999999 999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
+. ..+.........|.+.+|+| +..+++|..+.
T Consensus 227 tf---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 227 TF---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ee---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 84 56666666788999999999 88877776554
No 137
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.2e-25 Score=177.12 Aligned_cols=285 Identities=14% Similarity=0.153 Sum_probs=210.0
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-----eeecCCCCeeEEEECCCCCEEEEec-CCCcEEE
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYM 106 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~i 106 (424)
.+|...|++++ |+.||++|++++.| +.|++|+++.-+.. .....-+..+.+.|+||-+-++... ...++++
T Consensus 83 KgH~~~vt~~~--FsSdGK~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 83 KGHKKEVTDVA--FSSDGKKLATISGD-RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hccCCceeeeE--EcCCCceeEEEeCC-ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 45678899999 99999999999998 99999999864321 1122345678999999977665544 4457999
Q ss_pred EEccCcc---eee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475 107 WEVASGR---LLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 107 wd~~~~~---~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
|.+...+ ... .-+.|.-.+..+-...+++++++++.|..|.+|++. .+.+..+...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk------------Gq~L~~idtn 227 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK------------GQLLQSIDTN 227 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC------------Cceeeeeccc
Confidence 9874321 111 113466677777788889999999999999999994 3455666666
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEEEecC---CCc---eee--eee-cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KGR---LLR--NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~---~~~---~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
...-...+.+|+| +++++++-.--|++|.+- .|. ..+ .+. |...|..++|+++...+++.+.||++++|
T Consensus 228 q~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred cccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 6677788899999 899999999999999863 221 222 233 88899999999999999999999999999
Q ss_pred EcCCCCCCCCCcCceeee----eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEE
Q 014475 246 ALNAESPSTSSYGMHIIG----SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVV 319 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s 319 (424)
|++-.-..... ...+. .+..-.+....+..+| ++.|+.+. ...++++..++|+....+. .|.+.|.+++|+
T Consensus 306 dtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 306 DTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYS 382 (420)
T ss_pred eccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence 98653211100 01111 1222234445899999 77766654 5679999999998877765 588999999999
Q ss_pred ecCceeeeccCCCceeecc
Q 014475 320 RRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 320 ~~~~~l~~~~~d~~i~iw~ 338 (424)
++|+++++++ |..+++..
T Consensus 383 ~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 383 SDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCcEEeeec-ceeeeeec
Confidence 9999999986 45555554
No 138
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-25 Score=195.39 Aligned_cols=279 Identities=17% Similarity=0.188 Sum_probs=223.0
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCC--EEEEecCCCcEEEEEccC
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iwd~~~ 111 (424)
+|.+.|.++. ..|.|.+|++|+.| |+|++|.+.++.+.......+.|.|++|+|.+. .||++-.. .+.|-+..-
T Consensus 398 GHtg~Vr~iS--vdp~G~wlasGsdD-GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~ 473 (733)
T KOG0650|consen 398 GHTGLVRSIS--VDPSGEWLASGSDD-GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIF 473 (733)
T ss_pred ccCCeEEEEE--ecCCcceeeecCCC-CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccc
Confidence 4556788888 89999999999998 999999999999998888899999999999654 44544333 344443321
Q ss_pred c---------------------------------c----eeeeeccccCCeEEEEEccCCcEEEEeeCC---CcEEEEeC
Q 014475 112 G---------------------------------R----LLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSL 151 (424)
Q Consensus 112 ~---------------------------------~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g~i~iwd~ 151 (424)
| . -+...-.|...|..+.|+..|.+|++...+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0 011223478899999999999999987654 46899998
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE 230 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~ 230 (424)
.. ......+....+.+.++.|+|.. .+|++++. ..|++||+..++.++.+. ....|..++.+|.|
T Consensus 554 SK-----------~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 554 SK-----------RKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cc-----------ccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 54 22223445567788999999987 66666664 679999999888777766 55679999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC------CC---
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI------TH--- 300 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~------~~--- 300 (424)
..|++|+.|+.+..+|++... ++.+.+..|...+++++|++ -.++++|+.||++.|+.-. ..
T Consensus 620 Dnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred CeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 999999999999999999875 77888999999999999999 8999999999999998632 11
Q ss_pred cEEEEEeccCCC----eeEEEEEecCceeeeccCCCceeecc
Q 014475 301 NIVRMFRLAKGP----VNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 301 ~~~~~~~~~~~~----v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
-+++.+++|... |..+.|+|...+|.+++.||+|++|.
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 245677888764 88999999999999999999999983
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-26 Score=207.05 Aligned_cols=235 Identities=18% Similarity=0.250 Sum_probs=197.4
Q ss_pred ee-cCCCccccCCCCceeEEEEECCCC--c--eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475 46 FL-ASSQLREQPSASSGSILYWSWSKP--Q--VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (424)
Q Consensus 46 ~~-~~~~~l~~~~~~~g~i~vwd~~~~--~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 119 (424)
|. -+.++||+++.. |.|.+||+... + ......|...++++.|++ ...+|++|+.||.|++||++..+...++.
T Consensus 95 W~~~~~NlIAT~s~n-G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTN-GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred cccchhhhheeecCC-CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 55 356788888888 99999999862 2 223456899999999998 57889999999999999999999999999
Q ss_pred cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 120 ~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
+....|..+.|+| .+..|+++...|.+++||++. ..++...+..|.++|.++.|+|+. .+|+||+.|
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq----------p~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGRD 241 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ----------PDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGRD 241 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccC----------chhHHHHhhcccCceEEEeecCCC--ceeeecCCC
Confidence 9999999999999 678899999999999999975 345667788999999999999977 999999999
Q ss_pred CcEEEEecCCCc--eeeeeecCcceeEEEECCCCCE-EEEEe--CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475 199 RTCKVWSLLKGR--LLRNIVFPSVIDAIALDPAEHV-FYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (424)
Q Consensus 199 ~~v~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (424)
+.|+|||..+.+ ....+....++.++.|-|...+ |++++ .|-.|++||++..- -+...+..|...++
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVT 313 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc--------ccceeeeccCcccc
Confidence 999999998654 4555667889999999997655 55544 46789999999863 56678889999999
Q ss_pred EEEecC--CCEEEEeCCCCcEEEEeCCCCc
Q 014475 274 CLAYST--GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 274 ~~~~~~--~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
.++|.. ...+.+++.||+|..-..+++.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 999977 6688999999998776655543
No 140
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-26 Score=215.73 Aligned_cols=265 Identities=20% Similarity=0.265 Sum_probs=213.0
Q ss_pred eeEEEEECC--CCce----eeeecCCCCeeEEEECCCCCE----EEEecCCCcEEEEEccCc------ceeeeeccccCC
Q 014475 61 GSILYWSWS--KPQV----EVKSLPAEPIKPIAANSHGTY----IAGGGQSGDIYMWEVASG------RLLKKWHAHYRA 124 (424)
Q Consensus 61 g~i~vwd~~--~~~~----~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~ 124 (424)
.++.+|.++ ..+. ..........+.++|.+.+.. ||.|.+||.|.+||...- ..+.+...|.+.
T Consensus 39 ~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~ 118 (1049)
T KOG0307|consen 39 ASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP 118 (1049)
T ss_pred cccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc
Confidence 556666554 2221 122234668899999987665 899999999999998652 345667889999
Q ss_pred eEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 125 VTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 125 i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
|..+.|++ .+++|++|+.||.|.|||+.+...... ..-......|.+++|+..-. ..|++++.+|.+.|
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~---------~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT---------PGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVI 188 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC---------CCCCCCcccceEeccchhhh-HHhhccCCCCCcee
Confidence 99999999 455999999999999999976322111 11223567899999987654 67889999999999
Q ss_pred EecCCCceeeeeecC---cceeEEEECCCC-CEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475 204 WSLLKGRLLRNIVFP---SVIDAIALDPAE-HVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (424)
Q Consensus 204 wd~~~~~~~~~~~~~---~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (424)
||++..+++..+... ..+..++|+|+. ..+++++.|. .|.+||+|... .+++.+++|...|.++.
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLS 260 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------Cchhhhcccccceeeec
Confidence 999999888877733 347899999965 4566666544 69999999875 67888899999999999
Q ss_pred ecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeeeccCCCceeeccCCCCC
Q 014475 277 YST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 277 ~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~d~~i~iw~~~~~~ 343 (424)
|++ .+++++++.|+.|.+|+.++++.+..+......+..+.|.|... .+++++.||.|-|+.+.+..
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999 48999999999999999999999999998888999999999765 88899999999999998765
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.3e-25 Score=178.72 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=178.0
Q ss_pred ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhccc-ccccce---EEeecCCcCceeEEEEEEcCceeEEE
Q 014475 119 HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQ-RASHLY---LHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 119 ~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
+.|.+.|+++...+ .|+++++|+.||.|.+||+++........ ..+..+ ...-.+|+-.|.++.|-|-.. ..+.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-ceee
Confidence 46889999999988 78999999999999999997744211110 011111 122356888999999999765 6888
Q ss_pred EEeCCCcEEEEecCCCceeeeeecCcceeEEEECC---CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+++-|.++++||.++.+....+..++.|.+-+++| ..-++++|..+-.|++-|+..+ .....+.+|..
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr~ 189 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHRD 189 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeeccccC
Confidence 99999999999999999999999999999999999 3557888999999999999998 56788999999
Q ss_pred CeEEEEecC--CCEEEEeCCCCcEEEEeCCCC-cEEEEEe--------------ccCCCeeEEEEEecCceeeeccCCCc
Q 014475 271 AVTCLAYST--GDLLISGSEDGMVRVWDPITH-NIVRMFR--------------LAKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 271 ~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
.|.++.|+| .-.|++|+.||.|++||++.. .+...+. .|.+.|..++|+.++.++++.+.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999999 567889999999999999864 3333332 56678999999999999999999999
Q ss_pred eeeccCCCCC
Q 014475 334 HTSSRRHGSQ 343 (424)
Q Consensus 334 i~iw~~~~~~ 343 (424)
+++|+...+.
T Consensus 270 ~r~wn~~~G~ 279 (397)
T KOG4283|consen 270 IRVWNMESGR 279 (397)
T ss_pred eEEeecccCc
Confidence 9999987654
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-24 Score=172.92 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=195.8
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----ecCCCCeeEEEECC--CCCEEEEecCCCcEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAANS--HGTYIAGGGQSGDIYM 106 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~i 106 (424)
+|.+-|.++. |.+.|+++|+++.| ++|+|||.++..-... ..|.+.|..+.|.+ -|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs--~D~~GRRmAtCSsD-q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVS--FDFYGRRMATCSSD-QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeee--ecccCceeeeccCC-CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4557788988 99999999999998 9999999765543322 35899999999965 4999999999999999
Q ss_pred EEccCc---------ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE------
Q 014475 107 WEVASG---------RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH------ 169 (424)
Q Consensus 107 wd~~~~---------~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 169 (424)
|.-... ....++......|+.++|.| -|-.+++++.||.++||+.-+.... .......
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-----s~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-----SQWTLQHEIQNVI 162 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-----ccchhhhhhhhcc
Confidence 985211 23445666788999999998 5778999999999999987542211 1111111
Q ss_pred -eecCCcCceeEEEEEEcCce-eEEEEEeCC-----CcEEEEecCCCc----eeeeee-cCcceeEEEECCC----CCEE
Q 014475 170 -SFTGHTLRITDIVIGYGGVS-ATIVSASED-----RTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA----EHVF 233 (424)
Q Consensus 170 -~~~~~~~~i~~~~~~~~~~~-~~l~~~~~d-----~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~----~~~l 233 (424)
....+..+..|+.|++..-. ..|+.|+.+ +.++||...... .+..+. +..+|+.++|.|+ -..+
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 22346778889999875422 456666655 478899765432 222333 8899999999994 3578
Q ss_pred EEEeCCCcEEEEEcCCCC-----------CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--
Q 014475 234 YAGSRDGSIYIAALNAES-----------PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-- 299 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-- 299 (424)
++++.|| |+||.+.... ........+.+..+.+|.+.|..+.|+- |..|++.|.||.||+|...-
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999999 9999998421 1222334566778899999999999998 99999999999999998542
Q ss_pred -CcEEEEEe
Q 014475 300 -HNIVRMFR 307 (424)
Q Consensus 300 -~~~~~~~~ 307 (424)
.++...++
T Consensus 322 ~~kC~sv~~ 330 (361)
T KOG2445|consen 322 LWKCTSVLK 330 (361)
T ss_pred hheeeeEEe
Confidence 34444444
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.6e-24 Score=192.69 Aligned_cols=326 Identities=15% Similarity=0.212 Sum_probs=246.8
Q ss_pred EEeecCCCCCceEEEeCCCC--ceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eee
Q 014475 4 LIASSSVADTGIGCWDLESG--AEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEV 75 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~ 75 (424)
.|.+++ .|+++.+|...+. --+...+- ..+...+....- |+|++..+++-+.. |..++|...... ...
T Consensus 281 ~LLSAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l--w~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 281 DLLSAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL--WSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hheecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEE--EcCCCCEEEEeccc-CcEEEEeccCccceeeccc
Confidence 477888 9999999997654 33333322 222233444444 99999999988888 999999943322 234
Q ss_pred eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
...|.+.|..++|+|.|.+|++.+.|.+-+++-.-.. -.+..-+-|.-..+|++|-+....+++|.....+|+|+.
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 4568999999999999999999999999999865411 233444668889999999986677999999999999986
Q ss_pred Ccccch--------------------------------hcccc---------------------------------cccc
Q 014475 152 LTVFEE--------------------------------CESQR---------------------------------ASHL 166 (424)
Q Consensus 152 ~~~~~~--------------------------------~~~~~---------------------------------~~~~ 166 (424)
...... ..... .-..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 321000 00000 0011
Q ss_pred eEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475 167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
.++.+.+|...|.+++.+|++ +++++++... .|++|+..+......+. |.-.|+.++|+|++++|++.+.|.
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhHHhccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 234457899999999999999 8999998654 59999999888877676 889999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC--cEEEE--EeccCCCeeE
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRM--FRLAKGPVNN 315 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~ 315 (424)
++.+|........... ....+.|..-|.++.|+| +.+++|+|.|.+|++|..... +.+.. ...+..+|+.
T Consensus 595 t~sl~~~~~~~~~e~~-----fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFR-----FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred eEEeeeeecccchhhh-----hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 9999999665422211 233778999999999999 888999999999999998877 44443 2347789999
Q ss_pred EEEEec-----CceeeeccCCCceeeccCC
Q 014475 316 ILVVRR-----PLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 316 l~~s~~-----~~~l~~~~~d~~i~iw~~~ 340 (424)
+++.|- +..+++|-..|.|.+|+..
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 999862 2367889999999999966
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.1e-25 Score=186.12 Aligned_cols=278 Identities=18% Similarity=0.223 Sum_probs=207.7
Q ss_pred eecCCCccccCCCCc--eeEEEEECCCCceeeeecC----CCCeeEEEECC-------CCCEEEEecCCCcEEEEEccCc
Q 014475 46 FLASSQLREQPSASS--GSILYWSWSKPQVEVKSLP----AEPIKPIAANS-------HGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~----~~~v~~~~~s~-------~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
.-|+..+++++-.++ ..+.+|=.+.....+-..| .....|+.|.. -|+++|.|+.|..|.|||+.-.
T Consensus 133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~ 212 (463)
T KOG0270|consen 133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV 212 (463)
T ss_pred eccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc
Confidence 346556666554332 3444554443332222222 44556777742 3789999999999999998522
Q ss_pred c---eee------------------eeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 113 R---LLK------------------KWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 113 ~---~~~------------------~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
. +.. ...+|...|..+.|+.+ .+.|++||.|.+|++||+.+ ..+...
T Consensus 213 d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-----------g~p~~s 281 (463)
T KOG0270|consen 213 DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-----------GKPKSS 281 (463)
T ss_pred cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-----------CCccee
Confidence 1 001 12368888889999863 45789999999999999965 445667
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcC
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 248 (424)
+..|...|.++.|+|... ..|++|+.|++|.+.|.|. ...-..+...+.|..++|.|. ...+++++.||+++-+|+|
T Consensus 282 ~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 282 ITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred hhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 778999999999999876 8999999999999999994 344556668899999999994 5678888999999999999
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcE--EEEEeccCCCeeEEEEEecCc-
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPL- 323 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~- 323 (424)
... +++.++++|..+|.++++++ ..+++|++.|+.|++|++..-.+ +..-..--+...|.++.|+-.
T Consensus 361 ~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 361 NPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred CCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence 975 77889999999999999998 78999999999999999874433 222111223466677777654
Q ss_pred eeeeccCCCceeeccCCCCC
Q 014475 324 YLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 324 ~l~~~~~d~~i~iw~~~~~~ 343 (424)
.|+.|+..+.+++||+.+..
T Consensus 433 ~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred EEEecCccceEEEeecccCh
Confidence 56778888889999998664
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=6.6e-25 Score=186.10 Aligned_cols=290 Identities=14% Similarity=0.164 Sum_probs=215.2
Q ss_pred CCCceEEecceeecCCC--ccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEE
Q 014475 35 PPHGLACVGQRFLASSQ--LREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYM 106 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~--~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 106 (424)
+.+.|++++ |+|... ++|+|... |.|-+||+.+.+ ......|..+|.++.|+| +...+++.+.||+|++
T Consensus 185 ~~~Rit~l~--fHPt~~~~lva~GdK~-G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 185 TDRRITSLA--FHPTENRKLVAVGDKG-GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred cccceEEEE--ecccCcceEEEEccCC-CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 446789999 999876 44555554 999999995322 334456889999999999 5677888899999999
Q ss_pred EEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 107 WEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 107 wd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
-|++.+... ..+......+..+.|+.+...++.+..=|...+||+++.. .....+.-|...|++++++
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~----------s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG----------SEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC----------ccchhhhhhhcccceeecC
Confidence 999887443 3333355667888898888888888888899999998732 2233456688899999999
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCc-----eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGR-----LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (424)
|-.+ .+|+|++.|++++|||++.-. .+..+.|...|.+..|+|.+..|++.+.|..|+|||..--.....+ .
T Consensus 332 P~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p--~ 408 (498)
T KOG4328|consen 332 PVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP--L 408 (498)
T ss_pred CCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc--c
Confidence 9876 889999999999999998532 2455669999999999998888999999999999998411000000 0
Q ss_pred eeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEE-EEEecCc-eeeeccCCCc
Q 014475 260 HIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNI-LVVRRPL-YLNLGSFSNP 333 (424)
Q Consensus 260 ~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l-~~s~~~~-~l~~~~~d~~ 333 (424)
..+..-..+.. ......|.| ..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+. .++.++..|.
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gk 488 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGK 488 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccce
Confidence 11111111212 234568999 89999999999999999998888888765443 55554 7999887 4555667788
Q ss_pred eeeccCC
Q 014475 334 HTSSRRH 340 (424)
Q Consensus 334 i~iw~~~ 340 (424)
|.+|.-+
T Consensus 489 i~vft~k 495 (498)
T KOG4328|consen 489 IYVFTNK 495 (498)
T ss_pred EEEEecC
Confidence 9888654
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=197.77 Aligned_cols=254 Identities=17% Similarity=0.214 Sum_probs=205.2
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.+..|....+.++|.|+|.+|.+++.||.|++|+..+. +....+..+...|.+++.. +.+|++|+.+++|.+|.+..
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 44578888999999999999999999999999998766 4444444477788888775 55899999999999999965
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 232 (424)
+. .-..+....-++++++++.+| ++++.|+.|-.|++-+..+......+. |.++|.++.++|.+++
T Consensus 86 ~~-----------~~~iL~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 86 GE-----------EDTILARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred CC-----------ccceeeeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 32 112234456789999999988 899999999999999999887777776 9999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--c
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--A 309 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~ 309 (424)
||+.+.||.+++||++++..............+. ....++.++|+| +..++..+.|+.|++|+...++....+.. +
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 9999999999999999875432211111111111 145677899999 78888888999999999999998887764 3
Q ss_pred CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
...+..+.|+|+|+|||+++.||.|.+||..+.+.
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 34599999999999999999999999999996443
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=175.68 Aligned_cols=272 Identities=17% Similarity=0.236 Sum_probs=203.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEE--Eee--CCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce---e-
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQL--RYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---E- 74 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~--~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~- 74 (424)
..|||++ .|++|+||+++.-.... .++ -...|+ +.+. |.||.+.++++.....++++|.+.+.+- .
T Consensus 99 K~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~--FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~ 172 (420)
T KOG2096|consen 99 KKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVV--FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH 172 (420)
T ss_pred ceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCc---eEEE--ECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence 4689999 99999999988633221 111 111233 3444 9999999888877768999998764331 1
Q ss_pred ---------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc
Q 014475 75 ---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145 (424)
Q Consensus 75 ---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 145 (424)
+...|.-++..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..--
T Consensus 173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD 251 (420)
T KOG2096|consen 173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD 251 (420)
T ss_pred ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence 122345577778888889999999999999999998 9888888777777788999999999999999889
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------Cceeeeee--
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIV-- 216 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~-- 216 (424)
|++|.+--... .....-..+..+++|+..|..++|+++. ..+++.+.||++++||.+- .+.++...
T Consensus 252 VkVwE~~f~kd---G~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 252 VKVWEPIFTKD---GTFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred ceEEEEEeccC---cchhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 99998732111 0112233456789999999999999998 8999999999999999752 22222221
Q ss_pred ---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475 217 ---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (424)
Q Consensus 217 ---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i 292 (424)
..+....+.++|+|+.|+++. ...+.++..++++ ..-..-..|...|.+++|++ |+++++++ |..+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~--------~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK--------DYPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc--------cchhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 123345889999999888765 4579999998875 22223346999999999999 99999997 6778
Q ss_pred EEEe
Q 014475 293 RVWD 296 (424)
Q Consensus 293 ~iwd 296 (424)
+++.
T Consensus 397 rv~~ 400 (420)
T KOG2096|consen 397 RVIR 400 (420)
T ss_pred eeec
Confidence 8876
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=176.74 Aligned_cols=272 Identities=18% Similarity=0.239 Sum_probs=214.6
Q ss_pred eeecCCCccccCCCCceeEEEEECCCCc--------------eeeeecCCCCeeEEEEC-------CCCCEEEEecCCCc
Q 014475 45 RFLASSQLREQPSASSGSILYWSWSKPQ--------------VEVKSLPAEPIKPIAAN-------SHGTYIAGGGQSGD 103 (424)
Q Consensus 45 ~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------------~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~dg~ 103 (424)
+|+|||..+++.+.| ..+.+|++...- ...+......|...+|- |+..++|+.+.+.-
T Consensus 56 kWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 56 KWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred eeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 399999999999998 999999985311 22333446677777774 67889999999999
Q ss_pred EEEEEccCcceeeeecc--ccC---CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 104 IYMWEVASGRLLKKWHA--HYR---AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
|++||.-+|+...++++ |.. ...+++|+|||.+|++|.. ..|++||+......+... ....+...+..+-|
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy---~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVY---TTVTKGKFGQKGII 210 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcch---hhhhccccccccee
Confidence 99999999998888754 333 4568999999999998764 589999994422211111 11111123457788
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCC
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSS 256 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~ 256 (424)
.+++|+|... ..++.++...++-|+.-..+.++..+. |.+.|+.++|.++|+.|++|.. +..|..||++...
T Consensus 211 sc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----- 284 (406)
T KOG2919|consen 211 SCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----- 284 (406)
T ss_pred eeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence 9999999864 689999999999999988888888776 8999999999999999999875 6789999999875
Q ss_pred cCceeeeeecccCc-CeEEEEe--cC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475 257 YGMHIIGSLSDHSK-AVTCLAY--ST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (424)
Q Consensus 257 ~~~~~~~~~~~~~~-~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 330 (424)
.++..+..|.. .-..|.| .| +++|++|+.||.|++||++. +..+..+..|...++.++++|--.++++++.
T Consensus 285 ---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 285 ---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 56667777765 3344555 45 99999999999999999998 7778888889999999999999888887754
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=9.4e-25 Score=180.82 Aligned_cols=241 Identities=18% Similarity=0.276 Sum_probs=189.1
Q ss_pred cCCCCeeEEEECCCC--CEEEEecCCCcEEEEEccC----------------cceeeeeccccCCeEEEEEcc-CCcEEE
Q 014475 78 LPAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVAS----------------GRLLKKWHAHYRAVTCLVFSE-DGSFLI 138 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 138 (424)
.|.+.++.+.-++-+ .+.++=+..|.|.||++.. .+++.++.+|...=..++|+| ....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 356677777777644 4556667889999999853 255677889999999999999 333488
Q ss_pred EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---ceeeee
Q 014475 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNI 215 (424)
Q Consensus 139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~ 215 (424)
+|.--+.|++|...++.=. .-...+.+|+..|-.++|+|... ..|++|+.||+|+|||++.+ .++..-
T Consensus 229 sGDc~~~I~lw~~~~g~W~--------vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK--------VDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cCccccceEeeeeccCcee--------ecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEee
Confidence 8888889999998663211 11234567999999999999876 89999999999999999988 344444
Q ss_pred ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEE
Q 014475 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR 293 (424)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~ 293 (424)
.|++.|+.+.|+....+|++|+.||.++|||++.-+.. +++..++-|..+|+++.|+| ...|++++.|..|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 48999999999998889999999999999999986543 67889999999999999999 78899999999999
Q ss_pred EEeCCCCc----------------EEEEEeccC--CCeeEEEEEecC-ceeeeccCCCc
Q 014475 294 VWDPITHN----------------IVRMFRLAK--GPVNNILVVRRP-LYLNLGSFSNP 333 (424)
Q Consensus 294 iwd~~~~~----------------~~~~~~~~~--~~v~~l~~s~~~-~~l~~~~~d~~ 333 (424)
+||+..-. +.+-+-.|. ..+..+.|+++- -+|++.+.||.
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 99985311 111222354 478999999864 46777777774
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=192.01 Aligned_cols=285 Identities=16% Similarity=0.166 Sum_probs=208.6
Q ss_pred CCCccccCCCCceeEEEEECCCCcee-------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee--ec
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WH 119 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~ 119 (424)
..+.++..+.++|.|.++|....... ....|...|..+.|-|....|++++.|.++++||+++.+++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 33444444444599999998754433 2245889999999999778899999999999999999988776 88
Q ss_pred cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc----------------ccccccceEEeecCCcCceeE--
Q 014475 120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE----------------SQRASHLYLHSFTGHTLRITD-- 180 (424)
Q Consensus 120 ~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~-- 180 (424)
+|...|.+++|.| |...|++|+.||.|.|||++-...... ........+.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 9999999999999 566789999999999999975331100 000111122333445555555
Q ss_pred -EEEEEcCceeEEEEEeC-CCcEEEEecCCCceeeeee---------c---CcceeEEEECCCCCEEEEEeCCCcEEEEE
Q 014475 181 -IVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIV---------F---PSVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (424)
Q Consensus 181 -~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~---------~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (424)
+.+..|. ..|++++. |+.|++||+++........ + ...+.++..+..|.+|++.+.|+.|++|+
T Consensus 222 Tvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 222 TVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 4455555 78888887 9999999998754433221 1 24578888888999999999999999999
Q ss_pred cCCCCCCCCCcCceeeeeecccCcCeEE--EEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCCeeEEEEEecC
Q 014475 247 LNAESPSTSSYGMHIIGSLSDHSKAVTC--LAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRP 322 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~ 322 (424)
+..... .++..+.++...-.. -..+| +.++++|+.|....+|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus 300 m~s~s~-------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 300 MRSLSI-------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred ccccCc-------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 988652 334444444322111 23456 9999999999999999998765 455677899999999999743
Q ss_pred -ceeeeccCCCceeeccCCCC
Q 014475 323 -LYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 323 -~~l~~~~~d~~i~iw~~~~~ 342 (424)
.-++++++|..+++|++..+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCceeeccCcceEEEeccCc
Confidence 34666799999999999644
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-24 Score=185.10 Aligned_cols=256 Identities=17% Similarity=0.278 Sum_probs=206.8
Q ss_pred EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeec
Q 014475 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL 78 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~ 78 (424)
+.+|+.+ .|+.|++|.-. |+ ... .... ..+.-.|++ ......+++++|.. +.|+|||++...+. ....
T Consensus 48 lvvas~~-gdk~~~~~~K~-g~~~~Vp~-~~k~--~gd~~~Cv~--~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkd 119 (673)
T KOG4378|consen 48 LVVASMA-GDKVMRIKEKD-GKTPEVPR-VRKL--TGDNAFCVA--CASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKD 119 (673)
T ss_pred EEEeecC-CceeEEEeccc-CCCCccce-eecc--ccchHHHHh--hhhcceeeeccCcC-ceeeehhhHHHHHhhhccC
Confidence 4566667 89999999843 43 111 1111 112445555 55566889999988 99999999855443 3456
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~ 156 (424)
|...|+++.++....|||+++..|.|.|..+.++.....+... ...|.-+.|+|..++ |.+++.+|.|.+||+..
T Consensus 120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g--- 196 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG--- 196 (673)
T ss_pred CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---
Confidence 8899999999999999999999999999999999887777644 455678999996654 66889999999999954
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (424)
......-...|..+...++|+|..+ .+|++.+.|..|.+||.+..+....+....+...++|.++|.+|++|
T Consensus 197 -------~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 197 -------MSPIFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred -------CCcccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEee
Confidence 2223444567999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS 285 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t 285 (424)
+..|.|..||++... .++.....|...|++++|-|...+++
T Consensus 269 ~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred cCCceEEEEecccCC--------CCceEeeecccceeEEEeeecceeee
Confidence 999999999999975 77889999999999999988434443
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=175.98 Aligned_cols=280 Identities=21% Similarity=0.273 Sum_probs=203.9
Q ss_pred CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee----
Q 014475 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---- 76 (424)
Q Consensus 1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---- 76 (424)
+|..+|++- ..|.|++||..+|+.+..++++..+.+.+..+. -+ ....+.+++.| |+|++||++......+
T Consensus 39 ~e~~vav~l-Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~--~d-s~h~v~s~ssD-G~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 39 FETAVAVSL-SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFIS--CD-SPHGVISCSSD-GTVRLWDIRSQAESARISWT 113 (376)
T ss_pred cceeEEEEe-cCCeEEEEeccchhhhheecCCCCcccceEEec--CC-CCCeeEEeccC-CeEEEEEeecchhhhheecc
Confidence 367889998 999999999999999999999988888777544 11 45566777776 9999999986543322
Q ss_pred ecCCCCeeEEEECCCCCEEEEecC----CCcEEEEEccCcce-eeee-ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEE
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASGRL-LKKW-HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW 149 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iw 149 (424)
.....+..|++.+..++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+| +.++|++||.||.|.+|
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 223468888888888889998854 56799999998766 5554 57999999999999 67899999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc---------
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------- 220 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------- 220 (424)
|+.... ....+...-.|...|..+.|..++. +.+.+-+...+..+|+++.+.....+..+..
T Consensus 194 D~~~d~--------EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~ 264 (376)
T KOG1188|consen 194 DTKKDN--------EEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED 264 (376)
T ss_pred ecCCCc--------chhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence 996531 1222333445778899999998865 5789999999999999998876655543210
Q ss_pred --eeEE-EECC-CCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475 221 --IDAI-ALDP-AEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVR 293 (424)
Q Consensus 221 --i~~~-~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~ 293 (424)
-.-+ +.+| +...+++++. -+...++-+....... ..+.+..+.+ |..-|+++.|.. +.++.||++||.+.
T Consensus 265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 0011 1224 3444444443 5666666554321111 0133445555 777888888877 99999999999999
Q ss_pred EEeC
Q 014475 294 VWDP 297 (424)
Q Consensus 294 iwd~ 297 (424)
+|..
T Consensus 342 ~Wk~ 345 (376)
T KOG1188|consen 342 AWKV 345 (376)
T ss_pred EEec
Confidence 9985
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=5.2e-24 Score=186.38 Aligned_cols=272 Identities=16% Similarity=0.243 Sum_probs=210.6
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccc--cCCCC---------------------
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE--QPSAS--------------------- 59 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~~--------------------- 59 (424)
..||+|+ .||+|+||.+.+|.+++++.-. ..|.|++ |.|.+..-+ ++-..
T Consensus 413 ~wlasGs-dDGtvriWEi~TgRcvr~~~~d----~~I~~va--w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 413 EWLASGS-DDGTVRIWEIATGRCVRTVQFD----SEIRSVA--WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred ceeeecC-CCCcEEEEEeecceEEEEEeec----ceeEEEE--ecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 3699999 9999999999999999988643 4578888 888765422 22221
Q ss_pred ----------ceeEEEEECCCC-----ceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccc
Q 014475 60 ----------SGSILYWSWSKP-----QVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAH 121 (424)
Q Consensus 60 ----------~g~i~vwd~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~ 121 (424)
++.+..|.-... .+.....|..+|..+.|+..|.||++...+ ..|.|+++.......-|+..
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks 565 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS 565 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence 122233432211 022445578899999999999999997553 46999999888777777777
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
.+.|.++.|+|...+|++++.. .|++||+. +...++.+......|..++++|.| ..|+.++.|+.+
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-----------kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~k~ 631 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-----------KQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDKKM 631 (733)
T ss_pred CCceeEEEecCCCceEEEEecc-ceEEEehh-----------HHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCCee
Confidence 8889999999998899988864 89999994 344556666677889999999998 789999999999
Q ss_pred EEEecCCC-ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC----eEEE
Q 014475 202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VTCL 275 (424)
Q Consensus 202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~ 275 (424)
..+|+.-. ++.+.+. |...++++++++.-.+|++|+.||.+.++.-.--.-.......-++..+++|... |..+
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 99999754 4555555 8899999999999999999999999998864332222222223567788888766 8999
Q ss_pred EecC-CCEEEEeCCCCcEEEE
Q 014475 276 AYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iw 295 (424)
.|+| ..+|++++.||+|++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 9999 9999999999999998
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.7e-24 Score=180.35 Aligned_cols=236 Identities=17% Similarity=0.253 Sum_probs=185.7
Q ss_pred CCCccccCCCCceeEEEEECCCCce-----ee-----------------eecCCCCeeEEEECCC-CCEEEEecCCCcEE
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQV-----EV-----------------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIY 105 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~-----~~-----------------~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~ 105 (424)
.|+++|+|..+ ..|.|||++-... .+ ...|.+.|.+++|+.. .+.||+|+.|.+|+
T Consensus 191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 47899999998 8999999863210 00 1246778889999874 56899999999999
Q ss_pred EEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 106 MWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+||+.++++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.+.... .... -...+.|-.++|.
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--------s~~~---wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--------SGKE---WKFDGEVEKVAWD 338 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--------cCce---EEeccceEEEEec
Confidence 999999999999999999999999999 678899999999999999975111 1111 1235678889999
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (424)
+... ..+++++.||+|+-+|+|+. +++..+. |.++|.++++++. ..++++++.|+.+.+|++....+..
T Consensus 339 ~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~------- 410 (463)
T KOG0270|consen 339 PHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS------- 410 (463)
T ss_pred CCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-------
Confidence 8876 78888999999999999975 7888887 9999999999984 5678899999999999998765321
Q ss_pred eeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEE
Q 014475 262 IGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR 304 (424)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~ 304 (424)
+....-.-+...|.++.| ...++.|+..+.++|||+.+...+.
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 111111113366777777 6788999999999999998876543
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=7e-24 Score=175.68 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=174.5
Q ss_pred ccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchh-----cccccccceEEeecCCcCceeEEEEEEcCceeE
Q 014475 119 HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEEC-----ESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (424)
Q Consensus 119 ~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 191 (424)
.+|.+.++.+...+ +..+.++-+..|.|.||++....... ........++.++.+|...=..++|+|... ..
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GR 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-cc
Confidence 35778888888776 44566777889999999996533211 122355667889999999999999999654 56
Q ss_pred EEEEeCCCcEEEEecCCCceee----eeecCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 192 IVSASEDRTCKVWSLLKGRLLR----NIVFPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
|++|..-+.|++|...++.-.. ...|...|..++|+|. ...|++++.||.|+|||++.+.. +.....+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~~~~k 299 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAAVSTK 299 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cceeEee
Confidence 8899889999999988765322 2228889999999994 56788999999999999999742 2233348
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC---CcEEEEEeccCCCeeEEEEEec-CceeeeccCCCceeeccCCC
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~d~~i~iw~~~~ 341 (424)
.|...|+.+.|+. ..+||+|+.||+++|||+++ ++++.+|+-|..+|+++.|+|. ...|++++.|..|.+||+..
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 8999999999998 66999999999999999985 6788999999999999999985 46788899999999999974
Q ss_pred C
Q 014475 342 S 342 (424)
Q Consensus 342 ~ 342 (424)
.
T Consensus 380 E 380 (440)
T KOG0302|consen 380 E 380 (440)
T ss_pred c
Confidence 4
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.6e-23 Score=176.61 Aligned_cols=248 Identities=14% Similarity=0.209 Sum_probs=203.8
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 156 (424)
.++|+++.|+|....+++++.||.++||.+.. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~--- 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET--- 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc---
Confidence 57899999999999999999999999998853 345667766778999999999998 899999999999999977
Q ss_pred hhcccccccceEEeecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475 157 ECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (424)
.+...+....++. ..+....+++++ ++|+..+..|.|.+....+++.+..+..++.+..++|+.+++.|++
T Consensus 290 ------ak~~k~~~~~g~e~~~~e~FeVShd~--~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 290 ------AKVTKLKPPYGVEEKSMERFEVSHDS--NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA 361 (514)
T ss_pred ------cccccccCCCCcccchhheeEecCCC--CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence 3333344444443 456667788888 8999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc-CeEEEEecC-CCEEEEeCCCCcEEEEeCCC------CcEEEEEe
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK-AVTCLAYST-GDLLISGSEDGMVRVWDPIT------HNIVRMFR 307 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~------~~~~~~~~ 307 (424)
.+.+|.|++||++.. .++..+....+ .-++++.++ +.+||+|+..|.|.|||.++ .+++..+.
T Consensus 362 ~~~~GeV~v~nl~~~---------~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQN---------SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EcCCceEEEEecCCc---------ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 999999999999997 44555443221 235567677 99999999999999999653 46777777
Q ss_pred ccCCCeeEEEEEecCceeeecc--CCCceeeccCCCCCCCCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~ 347 (424)
.-...|+++.|+||.+.||.+| .+..+++-.+.+...+..
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence 7778999999999999998877 455688877776554433
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=170.02 Aligned_cols=243 Identities=17% Similarity=0.214 Sum_probs=184.3
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|+++|+.|++++.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g-------- 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG-------- 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC--------
Confidence 789999999999999999999999999999988899999999999999999999999999999999999663
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------cCcceeEEEECCCCCEEEEE
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~ 236 (424)
.+++.+. ..++|+...|+|...+..+++ -.+..-.+-++..++ ...+. ......+..|.+.|+++++|
T Consensus 98 ---s~l~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 98 ---SPLKRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred ---CceeEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEe
Confidence 2333333 567899999999876444444 334445555554422 11121 11223344688999999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC-------c--EEEE
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------N--IVRM 305 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~-------~--~~~~ 305 (424)
...|.+.+++..+. +++..++-.. ..|..+.++. +++|+.-+.|..||.|+++.- + +.+.
T Consensus 172 tsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 172 TSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred cCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 99999999999986 5566655544 6788899988 999999999999999998631 1 1111
Q ss_pred Ee--ccCCCeeEEEEEecCceeeeccC-CCceeeccCCCCCCCCCc
Q 014475 306 FR--LAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 306 ~~--~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~ 348 (424)
++ .....-.+++|+.+|.|+++++. -..++||....+.+...+
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 11 11235578899999999987763 345999999877765443
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=7.4e-23 Score=171.27 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=213.1
Q ss_pred CceEEecceeecCCC-ccccCCCCceeEEEEECCCCce-------e---eeecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475 37 HGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQV-------E---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~-------~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 105 (424)
..+..+. |.+++. .++++|.| ..|++|.+...+. . ....|...|+++.|+|+|..||+|+.+|.|.
T Consensus 14 ~pv~s~d--fq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVD--FQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CceEEEE--eccCcccceecccCc-cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4577777 888777 89999998 9999999864321 1 2245899999999999999999999999999
Q ss_pred EEEcc--------C--------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475 106 MWEVA--------S--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 106 iwd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
+|... + ....+.+.+|...|..++|+|++.++++++-|..+++||+.. .....
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-----------G~l~~ 159 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-----------GQLLA 159 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-----------ceeEe
Confidence 99865 2 123455678999999999999999999999999999999944 56678
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------------------c----CcceeEEE
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------------------F----PSVIDAIA 225 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------------------~----~~~i~~~~ 225 (424)
.+..|...+..++|.|-+ +++++-+.|...+.+.+...+.+.... | +.-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 889999999999999988 899999988877777765443332221 1 12245678
Q ss_pred ECCCCCEEEEEeC----CC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-----------------
Q 014475 226 LDPAEHVFYAGSR----DG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST----------------- 279 (424)
Q Consensus 226 ~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------- 279 (424)
|+|+|.++++... .+ ..++|+-.... ++...+.....+...+.++|
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence 9999999987542 22 33455544322 33444444444444444443
Q ss_pred --CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 280 --GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 280 --~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
+-.++.++ ...|.+||.++..++.... -|-.+++.++|++||.+|+..|.||-.-+-..++.++.
T Consensus 310 pyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 310 PYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 23455554 5579999999988887654 47889999999999999999999998887777766654
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=6.5e-23 Score=174.10 Aligned_cols=274 Identities=15% Similarity=0.203 Sum_probs=202.4
Q ss_pred EEEeecCCCCCceEEEeCCCCc-eEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEECCCCceeeeec--
Q 014475 3 LLIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSL-- 78 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~~-- 78 (424)
.++|+|+ +-|+|-+||+.+.+ ....+.....|...|.++. |+|... .+.+++.| |+|++-|+++........
T Consensus 201 ~lva~Gd-K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyD-GtiR~~D~~~~i~e~v~s~~ 276 (498)
T KOG4328|consen 201 KLVAVGD-KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYD-GTIRLQDFEGNISEEVLSLD 276 (498)
T ss_pred eEEEEcc-CCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccC-ceeeeeeecchhhHHHhhcC
Confidence 6899999 99999999994221 1111222233445566666 888765 45555665 999999998775442222
Q ss_pred -CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCccc
Q 014475 79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 79 -~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
....+..+.|+.+...++.+..=|...+||++++.. ...+..|...|..++++| ...+|+|++.|++.+|||++...
T Consensus 277 ~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 277 TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR 356 (498)
T ss_pred ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc
Confidence 345677888998888888887778999999988754 666777989999999999 56789999999999999998743
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec----CCCceeeeeecCc------ceeEEE
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL----LKGRLLRNIVFPS------VIDAIA 225 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~----~~~~~~~~~~~~~------~i~~~~ 225 (424)
.. ..+......|...|.+..|+|.+ ..|++.+.|..|+|||. ..-.+...+.|+. ......
T Consensus 357 ~K-------~sp~lst~~HrrsV~sAyFSPs~--gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~ 427 (498)
T KOG4328|consen 357 GK-------ASPFLSTLPHRRSVNSAYFSPSG--GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAA 427 (498)
T ss_pred CC-------CCcceecccccceeeeeEEcCCC--CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhhe
Confidence 21 11244456799999999999998 56999999999999998 4455666666553 234668
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEE-EEecC-CCEEEEe-CCCCcEEEEeCC
Q 014475 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTC-LAYST-GDLLISG-SEDGMVRVWDPI 298 (424)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~-~~~l~t~-~~dg~i~iwd~~ 298 (424)
|.|+..++++|..-..|-++|-..+ +.+..+.... ..|.+ ..|+| +..+++| +..|.|.||--+
T Consensus 428 W~P~~~li~vg~~~r~IDv~~~~~~---------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 428 WDPDYNLIVVGRYPRPIDVFDGNGG---------QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eCCCccEEEEeccCcceeEEcCCCC---------EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 9999999999999999999998886 4444543333 25555 47899 6645554 567889888644
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=8.8e-23 Score=163.51 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=202.9
Q ss_pred ceeEEEEECCCCcee----eeecCCCCeeEEEECC-CCCEEEEecCC-------CcEEEEEccCc---------ceeeee
Q 014475 60 SGSILYWSWSKPQVE----VKSLPAEPIKPIAANS-HGTYIAGGGQS-------GDIYMWEVASG---------RLLKKW 118 (424)
Q Consensus 60 ~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~-~~~~l~~~~~d-------g~v~iwd~~~~---------~~~~~~ 118 (424)
++.|.+.+++.+.-. ....+.+.|..++-+| +.+.|+++..+ -...||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 478888887755432 2345688999999999 55566665331 23789988543 333444
Q ss_pred c-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475 119 H-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (424)
Q Consensus 119 ~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 197 (424)
. .+-+.|.|+.|.|++..+++-. |..|.+|++......... .....-..+....++-+|+|..+++.+++.+
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vae-----v~ss~s~e~~~~ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE-----VLSSESAEMRHSFTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhee-----ecccccccccceecccccCCCCccceEEEeC-
Confidence 3 4567899999999999888876 779999999774432110 1111122366778888999976657766654
Q ss_pred CCcEEEEecCCCceeeeee--cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475 198 DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (424)
Q Consensus 198 d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (424)
|+++..||+++.+....+. |...+..+.|+|+.+ +|++++.||.|++||.+..+ .++..+.+|...|.+
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWA 263 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEE
Confidence 8899999999988888877 788899999999765 57788999999999999986 788999999999999
Q ss_pred EEecC--CCEEEEeCCCCcEEEEeCCCC-----------------------------cEEEEEeccCCCeeEEEEEecCc
Q 014475 275 LAYST--GDLLISGSEDGMVRVWDPITH-----------------------------NIVRMFRLAKGPVNNILVVRRPL 323 (424)
Q Consensus 275 ~~~~~--~~~l~t~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~s~~~~ 323 (424)
+.|+| ..++++|+.|..|.+|...+- ..+.++..|...|.+++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 889999999999999965321 12446778999999999997555
Q ss_pred -eeeeccCCCceeeccCC
Q 014475 324 -YLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 324 -~l~~~~~d~~i~iw~~~ 340 (424)
.+|+-++||.+.|=+++
T Consensus 344 WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeEEEeccCceEEeecCC
Confidence 55888999999987765
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=8.2e-23 Score=166.51 Aligned_cols=288 Identities=17% Similarity=0.242 Sum_probs=210.2
Q ss_pred CCCCceEEecceeec-----CCCccccCCCCceeEEEEECCCCc--eeee----ecCCCCeeEEEECCC----CCEEEEe
Q 014475 34 SPPHGLACVGQRFLA-----SSQLREQPSASSGSILYWSWSKPQ--VEVK----SLPAEPIKPIAANSH----GTYIAGG 98 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~-----~~~~l~~~~~~~g~i~vwd~~~~~--~~~~----~~~~~~v~~~~~s~~----~~~l~~~ 98 (424)
.|...+..++ |.+ .-+.++++|. ..+.+|...... ..+. ..+.+....++|+-+ ..++|+|
T Consensus 36 d~~~~I~gv~--fN~~~~~~e~~vfatvG~--~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 36 DHNKPIFGVA--FNSFLGCDEPQVFATVGG--NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred cCCCccceee--eehhcCCCCCceEEEeCC--cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3445566665 542 3345666666 689999876543 2221 125677888888653 4588999
Q ss_pred cCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe---ecCC
Q 014475 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS---FTGH 174 (424)
Q Consensus 99 ~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~ 174 (424)
+.-|.|+|.|+.++++...+.+|...|+.+.++| +.++++++|.|..|++|++++ ..++.. ..+|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-----------~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-----------DVCVAVFGGVEGH 180 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-----------CeEEEEecccccc
Confidence 9999999999999999999999999999999999 557899999999999999965 334443 4679
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------------------------cCcceeEEE
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIA 225 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~ 225 (424)
...|.++.|+.++ .++++++.|.++++|++...+....+. |...|.|+.
T Consensus 181 rdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 181 RDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 9999999999999 799999999999999997433221111 222233333
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCC-CCC----CCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeC
Q 014475 226 LDPAEHVFYAGSRDGSIYIAALNA-ESP----STSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~----~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~ 297 (424)
| -|+++++-+-++.|..|.... ++. .........+..+.-....|.-+.| .| ++.||.|...|.|.+||+
T Consensus 259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 3 257888888899999998832 211 0111122334455555566666654 56 899999999999999999
Q ss_pred CCCcEEE--EEec--cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 298 ITHNIVR--MFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 298 ~~~~~~~--~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+..++.. ++.. ....|...+|+.|+..|+...+|++|.-||.-
T Consensus 337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9876632 2222 23489999999999999999999999999864
No 162
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=6.6e-22 Score=180.61 Aligned_cols=273 Identities=16% Similarity=0.184 Sum_probs=206.0
Q ss_pred eeEEEEECCCC-ceeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcce--eeee----ccccCCeEEEEEcc
Q 014475 61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRL--LKKW----HAHYRAVTCLVFSE 132 (424)
Q Consensus 61 g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~--~~~~----~~~~~~i~~~~~~~ 132 (424)
+.+.+|++..+ ..........+|.|+.|+| +..+++.|..+|+|.+||++.+.. ...+ ..|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 58999999887 4445566788999999999 678889999999999999987755 2222 45889999999976
Q ss_pred CC--cEEEEeeCCCcEEEEeCCcccchhcccccccce-EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec---
Q 014475 133 DG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLY-LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL--- 206 (424)
Q Consensus 133 ~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~--- 206 (424)
+. .-+++++.||.|+.|+++....+.+........ ...-......++++.|.+... ..++.|+++|.|.--+-
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCC
Confidence 44 349999999999999987654432222111111 011112345788899988765 78999999999887332
Q ss_pred CCCc-----ee-eeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-
Q 014475 207 LKGR-----LL-RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (424)
Q Consensus 207 ~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 279 (424)
+... .+ ....|.++|.++.++|-+..++..+.|.+++||...... .++..+..+...+++++|||
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--------~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--------SPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--------CcchhhhhccceeeeeEEcCc
Confidence 2222 11 222378999999999976655555559999999988432 55667777888899999999
Q ss_pred -CCEEEEeCCCCcEEEEeCCCC--cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 280 -GDLLISGSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 280 -~~~l~t~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
...|+++..||.|.+||+... .++.+.+.+....+.+.|+++|+.|++|...|.+.++++...
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 679999999999999998753 556666666667788899999999999999999999998633
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=3.5e-22 Score=162.88 Aligned_cols=281 Identities=15% Similarity=0.181 Sum_probs=201.8
Q ss_pred EEEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceee
Q 014475 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~ 75 (424)
..+||.+ ...+.+++..... .++.+... .+......++ |.-+ ..++|++|.- |.|+|.|+.+++..-
T Consensus 56 ~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcs--w~yd~~~~~p~la~~G~~-GvIrVid~~~~~~~~ 129 (385)
T KOG1034|consen 56 QVFATVG--GNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCS--WSYDSNTGNPFLAAGGYL-GVIRVIDVVSGQCSK 129 (385)
T ss_pred ceEEEeC--CcEEEEEEECCccceeeeeeccCC-CCCcceEEEE--EEecCCCCCeeEEeecce-eEEEEEecchhhhcc
Confidence 4567777 4678899876543 33333222 3455566666 5543 4578888877 999999999888764
Q ss_pred -eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 76 -KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 76 -~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
...|+..|+.+.|.|+ .+++++++.|..|++|++++..++..+ .+|.+.|.++.|++++.++++++.|..+++|+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 4579999999999995 578999999999999999999998887 67999999999999999999999999999999
Q ss_pred CCcccchhcccc--------------cccc--eE-EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCcee
Q 014475 151 LLTVFEECESQR--------------ASHL--YL-HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLL 212 (424)
Q Consensus 151 ~~~~~~~~~~~~--------------~~~~--~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~ 212 (424)
+....-....+. .... +. .+-.-|...|.|+.|-- +++++=+.++.|..|... -.+.+
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~ 285 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESI 285 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhh
Confidence 974221111000 0000 11 12345777888887753 688888889999999872 11211
Q ss_pred -------------eeee-cCccee--EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475 213 -------------RNIV-FPSVID--AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (424)
Q Consensus 213 -------------~~~~-~~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (424)
..+. ....|. ..+|+|-++.|+.|...|.+++||++...+.. ............|...+
T Consensus 286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~-----~ttl~~s~~~~tVRQ~s 360 (385)
T KOG1034|consen 286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK-----CTTLTHSKSGSTVRQTS 360 (385)
T ss_pred hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-----CceEEeccccceeeeee
Confidence 1111 112233 34567788999999999999999999876431 11111122346789999
Q ss_pred ecC-CCEEEEeCCCCcEEEEeCC
Q 014475 277 YST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 277 ~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|+. +.+|+...+|++|.-||..
T Consensus 361 fS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 361 FSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ecccCcEEEEEeCCCcEEEEEee
Confidence 999 9999999999999999854
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.2e-19 Score=168.79 Aligned_cols=315 Identities=26% Similarity=0.446 Sum_probs=239.3
Q ss_pred EEeecCCCCCceEEEeCCCCc-eEEEeeCCCCCCCceEEeccee-ecCCC-ccccCCCCceeEEEEECCC--Cceeeeec
Q 014475 4 LIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRF-LASSQ-LREQPSASSGSILYWSWSK--PQVEVKSL 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~l~~~~~~~g~i~vwd~~~--~~~~~~~~ 78 (424)
.++.++ .|+.+.+|+...+. ....+..... ..+..+. + .+++. .++..+..++.+.+|+... ........
T Consensus 79 ~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 153 (466)
T COG2319 79 LLLSGS-SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLA--LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153 (466)
T ss_pred EEEEec-CCCcEEEEEcCCCceeEEEEeccCC--CceeeEE--EECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence 456666 79999999999887 6666655332 3455555 4 67777 5555455349999999987 44455677
Q ss_pred CCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 156 (424)
|...|..++|+|++..+++++. ++.+++|+...+..+..+.+|...|.++.|+|++. .+++++.|+.+++||...
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~--- 230 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--- 230 (466)
T ss_pred CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---
Confidence 8999999999999999998885 99999999999888899999999999999999987 555559999999998742
Q ss_pred hhcccccccceEE-eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeee-ecCcceeEEEECCCCCEE
Q 014475 157 ECESQRASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-VFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l 233 (424)
..... .+..|.... ...|++++ ..+++++.|+.+++||.+.... ...+ .+...+.++.+.|++..+
T Consensus 231 --------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 231 --------GKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred --------CcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 22333 567777765 33788887 7888999999999999986664 3333 367899999999988888
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeee--cccCcCeEEEEecCC-CEEEEe-CCCCcEEEEeCCCCcEEEEEecc
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVTCLAYSTG-DLLISG-SEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
++++.|+.+.+|+..... ..... ..|...+..+.+.+. ..++.+ ..|+.+.+|+.............
T Consensus 300 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 300 ASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred EEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 889888889999887763 22222 467778999999323 566666 68899999999988733333322
Q ss_pred CCCeeEEEEEecCceeee-ccCCCceeeccCCCCCCCCCc
Q 014475 310 KGPVNNILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~ 348 (424)
..+..+.+.+ ...... +..++.+.+|+..........
T Consensus 371 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 371 -SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred -ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 2388999988 544444 689999999999877654443
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.1e-23 Score=177.67 Aligned_cols=261 Identities=16% Similarity=0.204 Sum_probs=191.8
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
.|.+.|+.+.|.|....|++++.||.+.+|+++. -+.+.++++|.++|.|++..++++++.+|+-||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 4678899999999999999999999999999932 15678899999999999999999999999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL 226 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~ 226 (424)
++........ ..........+.+|...++.++++... ..|++++.||++++|+.....+ ..+. ..+....+.+
T Consensus 372 ~~p~n~dp~d-s~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 372 NLPPNQDPDD-SYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred ccCCCCCccc-ccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 8752111111 112223456788999999999999988 7899999999999999876665 3332 2233445555
Q ss_pred CCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE
Q 014475 227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR 304 (424)
Q Consensus 227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~ 304 (424)
-... ...++...-+.-.++++.......... ........-...+..+.++| ..+.+++..|+.|+++|..+++++.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~--s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE--SSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeecc--ccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 4332 222222222222333333321100000 00000011124577788889 8999999999999999999999999
Q ss_pred EEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 305 ~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
....|...++++++.|+|.+|++++.|+.+++|++....+
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999999999999999999999875543
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=8.8e-22 Score=174.81 Aligned_cols=270 Identities=16% Similarity=0.182 Sum_probs=215.3
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 116 (424)
.|.-++ |-|||..|+.+.. ..+.+||...+... ....|.+.|+|++|+.||+.+|+|+.|..|.+|..+-.. +.
T Consensus 14 ci~d~a--fkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L 88 (1081)
T KOG1538|consen 14 CINDIA--FKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL 88 (1081)
T ss_pred chheeE--ECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee
Confidence 567777 9999999888876 58999999877654 557899999999999999999999999999999854322 22
Q ss_pred eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC--cCceeEEEEEEcCceeEEEE
Q 014475 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~ 194 (424)
.+ .|.+.|.|+.|+|-...|++++-. ..-+|..... ....| ...+.+.+|..+| .+++.
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK---------------~V~K~kss~R~~~CsWtnDG--qylal 149 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK---------------SVSKHKSSSRIICCSWTNDG--QYLAL 149 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhh---------------hHHhhhhheeEEEeeecCCC--cEEEE
Confidence 22 499999999999998999999875 5778987431 11223 3456667777777 99999
Q ss_pred EeCCCcEEEEecCCCceeeeee----cCcceeEEEECCCC-----CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
|-.+|+|.+-+- +++....+. ...+|.+++|+|.. ..+++.....++.+|.+... .+..-
T Consensus 150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----------~Igk~ 218 (1081)
T KOG1538|consen 150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----------QIGKD 218 (1081)
T ss_pred eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----------eeccc
Confidence 999999999874 455555554 45789999999953 56888888888888888763 33333
Q ss_pred cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 266 ~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+.-.-...|+.+.+ |.+++.|+.|+.+.+|. +.|-.+.++-.....|+.++..|++++.+.|..||+|-.+++-...
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 33444567888888 99999999999999997 6788888888788899999999999999999999999999876443
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=173.98 Aligned_cols=263 Identities=16% Similarity=0.244 Sum_probs=211.2
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
|++||+++ .+.|||...|..+.++++|. +.|.|++ |+.+|+++|+|+.| +.|.+|+-.- +-..+..|.+
T Consensus 26 qL~lAAg~----rlliyD~ndG~llqtLKgHK---DtVycVA--ys~dGkrFASG~aD-K~VI~W~~kl-EG~LkYSH~D 94 (1081)
T KOG1538|consen 26 QLILAAGS----RLLVYDTSDGTLLQPLKGHK---DTVYCVA--YAKDGKRFASGSAD-KSVIIWTSKL-EGILKYSHND 94 (1081)
T ss_pred eEEEecCC----EEEEEeCCCccccccccccc---ceEEEEE--EccCCceeccCCCc-eeEEEecccc-cceeeeccCC
Confidence 35555555 89999999999999988754 7899999 99999999999998 9999998543 3456788999
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.|.|+.|+|-...|++++-+ ..-+|..+.....+ . .....+.+++|..||++++.|-.+|+|.+-+-..
T Consensus 95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-------- 163 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-------- 163 (1081)
T ss_pred eeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC--------
Confidence 99999999999999998764 57788865443322 1 1345688999999999999999999999986532
Q ss_pred ccccceEEeecCCcCceeEEEEEEcC---ceeEEEEEeCCCcEEEEecCCCceee-eeecCcceeEEEECCCCCEEEEEe
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGG---VSATIVSASEDRTCKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
.....+..-.+.+.+|.+++|+|.. ....+++.....++.++.+. |+.+. .-...-...|+.+.|+|.+++.|+
T Consensus 164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred -CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 2233344456688999999999863 23678888889999999885 44443 334566678999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
.|+.+.+|..+. -.+.++.....+|..++..| +++++.|+.||+|..|++.
T Consensus 242 sdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 242 SDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCceEEEeecC----------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999998766 44666666788999999999 9999999999999999864
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-22 Score=164.38 Aligned_cols=231 Identities=15% Similarity=0.235 Sum_probs=175.7
Q ss_pred CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 93 TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
..+|++...|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++.. .......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~---------~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ---------AESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc---------hhhhhee
Confidence 5688888999999999999999999999999999999976 4667999999999999999872 3333444
Q ss_pred ecCCc-CceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCce-eeeee--cCcceeEEEECC-CCCEEEEEeCCCc
Q 014475 171 FTGHT-LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRL-LRNIV--FPSVIDAIALDP-AEHVFYAGSRDGS 241 (424)
Q Consensus 171 ~~~~~-~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~-~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~ 241 (424)
+..+. .+..+++....+ +.+++|++ +-.|.+||+|..+. +..+. |...|++++|+| +.++|++|+.||.
T Consensus 112 ~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 55555 344555554344 67777764 66799999998776 55554 889999999999 6789999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEE-------------
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMF------------- 306 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~------------- 306 (424)
+.+||+...... ..+.....|...|.++.|.. -+.|.+-+...+..+|+++.+.+...+
T Consensus 190 vnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 190 VNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred EEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 999999775321 22334445777788888876 346777777888888887654322111
Q ss_pred ------------------------------------------------e-ccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 307 ------------------------------------------------R-LAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 307 ------------------------------------------------~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
. +|..-|+++.|...+.++.+|+.||.+.+|
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 1 244467778888888899999999999999
Q ss_pred cCC
Q 014475 338 RRH 340 (424)
Q Consensus 338 ~~~ 340 (424)
..+
T Consensus 344 k~~ 346 (376)
T KOG1188|consen 344 KVE 346 (376)
T ss_pred ecC
Confidence 963
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.7e-22 Score=189.82 Aligned_cols=268 Identities=15% Similarity=0.273 Sum_probs=200.1
Q ss_pred CCCceEEEeCCCCceEE--EeeCCCCCCCceEEecceeecCCCc---cccCCCCceeEEEEECCCC---c----eeeeec
Q 014475 11 ADTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFLASSQL---REQPSASSGSILYWSWSKP---Q----VEVKSL 78 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~---l~~~~~~~g~i~vwd~~~~---~----~~~~~~ 78 (424)
.+.++.||.+.-..... ...+......+...++ |.+.|.. +++||.+||.|.+||...- . +.....
T Consensus 37 t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~--W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 37 TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLA--WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred cccccceeeecccCccccccccccccccccceeee--ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 45666666654322221 1112222345566777 8888887 4666666699999998752 1 123456
Q ss_pred CCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee--ccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcc
Q 014475 79 PAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 79 ~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 154 (424)
|.++|..+.|++. +++||+|+.||.|.|||+.+-+.-..+ ....+.|.+++|+.. ...|++++.+|++.|||++.
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~- 193 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK- 193 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC-
Confidence 8999999999996 559999999999999999876555444 224678999999874 45688899999999999965
Q ss_pred cchhcccccccceEEeecCCc--CceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCC-ceeeeee-cCcceeEEEEC
Q 014475 155 FEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKG-RLLRNIV-FPSVIDAIALD 227 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~ 227 (424)
...+..+..+. ..+..+.|+|+.. ..+++++.|. .|.+||+|.. .+++.+. |...|.++.|+
T Consensus 194 ----------~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 194 ----------KKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ----------CCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccC
Confidence 22333333333 4577899999987 5566666554 5999999854 4555554 89999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc
Q 014475 228 PAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 228 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+.+ .++++++.|++|.+|+.+++ +.+..+.....++..+.|+| ...+++++.||.|.|+.+....
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCc---------eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 955 88999999999999999997 67778888889999999999 5589999999999999987653
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=3.3e-19 Score=165.95 Aligned_cols=286 Identities=28% Similarity=0.499 Sum_probs=226.3
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--eeeeecCC-CCeeEEEE-CCCCC-EEEEecC-CCcEEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPA-EPIKPIAA-NSHGT-YIAGGGQ-SGDIYMW 107 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~v~iw 107 (424)
.+...+..+. +.+.+..++.++.+ +.+.+|+..... ........ ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 63 ~~~~~i~~~~--~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 63 GHEDSITSIA--FSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eccceEEEEE--ECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 4556677777 99999999998876 999999998875 22222222 37777777 88887 5555444 8999999
Q ss_pred EccC-cceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475 108 EVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (424)
Q Consensus 108 d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 185 (424)
+... ......+..|...|..++|+|+++.+++++. |+.+++|++.. ...+..+.+|...+.+++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----------GKPLSTLAGHTDPVSSLAFSP 208 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----------CceEEeeccCCCceEEEEEcC
Confidence 9988 7788888999999999999999998888886 99999999954 345666777999999999997
Q ss_pred cCceeEEEEEeCCCcEEEEecCCCceee-eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 186 GGVSATIVSASEDRTCKVWSLLKGRLLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 186 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
++. ..+++++.|+.+++||...+.... .+. +.... ...|+|++..+++++.|+.+++|+.+.... ...
T Consensus 209 ~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~ 278 (466)
T COG2319 209 DGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLR 278 (466)
T ss_pred Ccc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEE
Confidence 762 255555999999999988777776 344 44443 338999998899999999999999998652 223
Q ss_pred eecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe--ccCCCeeEEEEEecCceeeec-cCCCceeeccC
Q 014475 264 SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRR 339 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~ 339 (424)
....|...+.++.|.| +..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+.
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 3367889999999999 8888888888999999999888777776 788889999994332455555 68899999999
Q ss_pred CCCC
Q 014475 340 HGSQ 343 (424)
Q Consensus 340 ~~~~ 343 (424)
....
T Consensus 359 ~~~~ 362 (466)
T COG2319 359 RTGK 362 (466)
T ss_pred CCCc
Confidence 8765
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=156.86 Aligned_cols=287 Identities=10% Similarity=0.065 Sum_probs=217.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCC------Cceee--eecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 105 (424)
+|...|.++. |+.++++|+++|.| -.+++|+++. ++... ...|...|.|++|...++.+.+|+.+++|.
T Consensus 54 ~H~GCiNAlq--FS~N~~~L~SGGDD-~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQ--FSHNDRFLASGGDD-MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhccccceee--eccCCeEEeecCCc-ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4556777888 99999999999988 9999999863 22222 233568999999999999999999999999
Q ss_pred EEEccCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 106 MWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 106 iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
..|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+.... ................+.|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~--------~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN--------PISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC--------CCceeeecCCCccceeeee
Confidence 999999988877642 346899999999999999999999999999976221 1112222334456677888
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCce-eeeee----cCc---ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV----FPS---VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS 255 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~----~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (424)
+|..+ .+|++.+..+-+-+||.+..+. +.... .+. .-..+.|+|+|..|++--....-.+||+-...
T Consensus 203 ~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R---- 277 (609)
T KOG4227|consen 203 HPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR---- 277 (609)
T ss_pred cCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc----
Confidence 88765 7889999999999999986532 11111 122 22567899999999887777777788887753
Q ss_pred CcCceeeeeec-c-----cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC----------C-------------cEEEEE
Q 014475 256 SYGMHIIGSLS-D-----HSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT----------H-------------NIVRMF 306 (424)
Q Consensus 256 ~~~~~~~~~~~-~-----~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~----------~-------------~~~~~~ 306 (424)
.++..+. . ....+.+++|....-+++|+.+-.|++|.+.. | +.+..+
T Consensus 278 ----~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 278 ----CFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred ----ceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 1122221 0 12356677787666799999999999998742 1 234577
Q ss_pred eccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++|..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecccccccceeecCCcceEeccchhhheeccccc
Confidence 8999999999999999999999999999999765
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=7.1e-21 Score=168.17 Aligned_cols=156 Identities=18% Similarity=0.222 Sum_probs=122.1
Q ss_pred eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-------eeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcC
Q 014475 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 248 (424)
|+++.|.|-.. ..|++++.||.|++|.+..+. +...+. |...|+.+.|+| ....|++++.|-+|++||++
T Consensus 630 vtDl~WdPFD~-~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDD-ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCCh-HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 34444554333 689999999999999987543 233333 788999999999 56789999999999999999
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccC-CCeeEEEEEecCcee
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAK-GPVNNILVVRRPLYL 325 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~s~~~~~l 325 (424)
+. .....+.+|.+.|..++|+| |+.+++.+.||+|++|+.++++ +++.-++.. ..--.+.|..||+++
T Consensus 709 ~~---------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 709 NA---------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV 779 (1012)
T ss_pred hh---------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence 97 45667889999999999999 9999999999999999998764 344333222 234578899999999
Q ss_pred eeccCCCc----eeeccCCCCC
Q 014475 326 NLGSFSNP----HTSSRRHGSQ 343 (424)
Q Consensus 326 ~~~~~d~~----i~iw~~~~~~ 343 (424)
++.+.|.. |.+|+..+-.
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred EEecccccchhhhhhhhhhhcc
Confidence 98887764 7788776543
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=9.5e-21 Score=150.05 Aligned_cols=297 Identities=12% Similarity=0.139 Sum_probs=202.0
Q ss_pred eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSG 102 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg 102 (424)
+...+++| ...++++. |-.+++ |.++... |.|++|++++.... +...+...|+.+.--|++ .+.+-+.|+
T Consensus 6 P~fvLRp~---~~~v~s~~--fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~ 77 (323)
T KOG0322|consen 6 PFFVLRPH---SSSVTSVL--FQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDP 77 (323)
T ss_pred CeeEeccc---cchheehh--hccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCc
Confidence 44455544 45677777 877776 6666666 99999999987654 334578899999999984 577778999
Q ss_pred cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-cEEEEeCCcccchhcccccccceEEee----cCCcCc
Q 014475 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECESQRASHLYLHSF----TGHTLR 177 (424)
Q Consensus 103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (424)
.+.+|++..+..+.. |.-.++++.|.+-. +...+... .+..++-+........+......+... .+..+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 999999977554432 44556666665421 22222221 222222222111000001111111111 223455
Q ss_pred eeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeee-----------ecCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 178 ITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI-----------VFPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 178 i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
+.+..+... +..-++++|.++|.+.+||+.++..+..+ .|..++.++.+.+.-..=+.|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 666654332 22256778889999999999987333222 267889999998866666778888899999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY 324 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 324 (424)
+++...... +.-.+..-....|..+..-| ++.+||++.|+.||+|+.++..++..++-|.+.|++++|+|+...
T Consensus 233 Sl~~s~gsl-----q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 233 SLNHSTGSL-----QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eeccccCcc-----cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCch
Confidence 987653221 11122222345677888888 999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCceeeccC
Q 014475 325 LNLGSFSNPHTSSRR 339 (424)
Q Consensus 325 l~~~~~d~~i~iw~~ 339 (424)
+|+++.|+.|-+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.6e-20 Score=173.48 Aligned_cols=284 Identities=19% Similarity=0.262 Sum_probs=209.9
Q ss_pred CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec--CCCccccCCCCceeEEEEECCCC-----ce
Q 014475 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKP-----QV 73 (424)
Q Consensus 1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~-----~~ 73 (424)
+|-.+++++ ..-.|+|||.+.++.+..|..+..+...|+.+. +.. |..++++++.| |.|+||+-... +.
T Consensus 1075 f~p~i~~ad-~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~--liNe~D~aLlLtas~d-GvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1075 FEPQIAAAD-DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE--LINEQDDALLLTASSD-GVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred CCceeEEcC-CcceEEEEecccCceeccccCCCCCCCccceee--eecccchhheeeeccC-ceEEEecccccccCCcee
Confidence 356788888 788999999999999999998888888898888 653 45677788887 99999985322 11
Q ss_pred eeeec--------CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEcc-CCcEEEEeeCC
Q 014475 74 EVKSL--------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSE-DGSFLISGSED 143 (424)
Q Consensus 74 ~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~s~~~d 143 (424)
..... ..+.=.-++|.....+|+++|.-..|+|||.........+.. ....|+++.-+. .|+.+++|..|
T Consensus 1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC
Confidence 11110 111114556777666677767678999999988877776643 445677766543 57999999999
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCc--eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---c-
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F- 217 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~- 217 (424)
|.|++||.+... ....+.....|+.. |..+.+.+.|. ..|++|+.+|.|++||++.......+. +
T Consensus 1231 GsvRvyD~R~a~--------~ds~v~~~R~h~~~~~Iv~~slq~~G~-~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1231 GSVRVYDRRMAP--------PDSLVCVYREHNDVEPIVHLSLQRQGL-GELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred CceEEeecccCC--------ccccceeecccCCcccceeEEeecCCC-cceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999997632 22456677788877 99999999886 379999999999999999743222222 1
Q ss_pred --CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475 218 --PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (424)
Q Consensus 218 --~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i 294 (424)
.+..+++..+++...+++|+. +.|.||++.........+.... +....+.+.|++|+| .-++|+|+.|..|.|
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 335999999999999999998 9999999987654322211111 112335679999999 888999999999999
Q ss_pred EeCCCCc
Q 014475 295 WDPITHN 301 (424)
Q Consensus 295 wd~~~~~ 301 (424)
|.....+
T Consensus 1378 Ys~~k~~ 1384 (1387)
T KOG1517|consen 1378 YSCEKPR 1384 (1387)
T ss_pred eecCCcC
Confidence 9876543
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=165.43 Aligned_cols=318 Identities=14% Similarity=0.156 Sum_probs=225.8
Q ss_pred CCceEEEeCCCCceEE-EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-----CceeeeecCCCCeeE
Q 014475 12 DTGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSLPAEPIKP 85 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-----~~~~~~~~~~~~v~~ 85 (424)
+..+.+|+.+++.... ....+..|...++|.+ ++|.++++|++..+ |.|.+|.--. .......=|..+|++
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVA--LSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEE--eccccceEEEeccC-CcEEEEeccccccccccceEEEecccccce
Confidence 3568899988765211 1112223434478888 99999999999998 9999997433 122333447889999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
++|+++|.+|.+|+..|.+.+|.+++++ .+-++.-.++|..+.++||+.+.+....|..|.+....+............
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 9999999999999999999999999998 555666789999999999999999999999999998865433222211111
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------c------CcceeEEEECCCCCEE
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------F------PSVIDAIALDPAEHVF 233 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~------~~~i~~~~~~~~~~~l 233 (424)
..-..-....+-.+.++++|.. +.++-.+..|.|.+||+.+.+.+..+. + ...++.++.+..|.++
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~--~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRT--NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred CCccccccccccceeEEEcCCC--CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 1001112234556677888855 778888999999999999887776664 1 1246777777789988
Q ss_pred EEEe--------CCC--cEEEEEcCCCCCCCCCcCcee-eeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCCC
Q 014475 234 YAGS--------RDG--SIYIAALNAESPSTSSYGMHI-IGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 234 ~~~~--------~dg--~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~~ 299 (424)
++.- .|| .+++|-........ .+ ......|...+...++.+ ....++++.||.++||-+..
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 8853 233 57788876654221 22 223345777666665544 34899999999999998833
Q ss_pred Cc----------EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 300 HN----------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 300 ~~----------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
.+ +...-.-|..++++++|+.||. +++.+.|+.|.+||..+
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 21 2222223788999999999995 55566899999999987
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=3.1e-20 Score=149.17 Aligned_cols=272 Identities=13% Similarity=0.165 Sum_probs=199.1
Q ss_pred CceEEecceee--cC-CCccccCCCC---ceeEEEEECC--CCceeee--ecCCCCeeEEEECCCC-----CEEEEecCC
Q 014475 37 HGLACVGQRFL--AS-SQLREQPSAS---SGSILYWSWS--KPQVEVK--SLPAEPIKPIAANSHG-----TYIAGGGQS 101 (424)
Q Consensus 37 ~~v~~~~~~~~--~~-~~~l~~~~~~---~g~i~vwd~~--~~~~~~~--~~~~~~v~~~~~s~~~-----~~l~~~~~d 101 (424)
-.+.+++ |+ ++ ..++|.++-. .+.|.+-.++ +++.... ..|.-+++.+.|.|+. .+||+.+
T Consensus 45 ~~lya~~--Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMN--WSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred Cceeeec--cccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--
Confidence 3466666 66 33 3345555422 2566666554 3343333 4678899999999976 3566543
Q ss_pred CcEEEEEccCcce----eeee-----ccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee
Q 014475 102 GDIYMWEVASGRL----LKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF 171 (424)
Q Consensus 102 g~v~iwd~~~~~~----~~~~-----~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 171 (424)
..+++|.+...+. ...+ ..+..++++..|+. +.+++.+++-|-+..|||++++ ........+
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------~~~~vkTQL 192 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------VSGTVKTQL 192 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------cccceeeEE
Confidence 3799999874221 1111 24667999999987 7889999999999999999773 122234556
Q ss_pred cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECC-CCCEEEEEeC-CCcEEEE
Q 014475 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSR-DGSIYIA 245 (424)
Q Consensus 172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~ 245 (424)
-.|...|.+++|...+. +.|++.+.||.+|+||++..+-...+. ...+...++|++ +.+++++-.. ...|.+.
T Consensus 193 IAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 78999999999998654 899999999999999999766444333 245678899998 4566776544 4579999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCc------EEEEEeccCCCeeEEE
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN------IVRMFRLAKGPVNNIL 317 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~ 317 (424)
|++... .++..+++|.+.|+.++|.| ...|++++.|..+.+||+.+.- ++..+. ..++|+.+.
T Consensus 272 DiR~P~--------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~ 342 (364)
T KOG0290|consen 272 DIRVPC--------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQ 342 (364)
T ss_pred EecCCC--------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeee
Confidence 999985 78899999999999999999 8899999999999999997532 222233 457999999
Q ss_pred EEe-cCceeeeccC
Q 014475 318 VVR-RPLYLNLGSF 330 (424)
Q Consensus 318 ~s~-~~~~l~~~~~ 330 (424)
|++ .+.+++.+..
T Consensus 343 Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 343 WSSSQPDWIAICFG 356 (364)
T ss_pred ecccCCCEEEEEec
Confidence 995 5667776643
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=6.9e-21 Score=155.11 Aligned_cols=222 Identities=20% Similarity=0.243 Sum_probs=175.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCC--CCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Ccee---e-
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVE---V- 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~---~- 75 (424)
.++|+.+ .|.-|++||.-+|+....++.- .....+..+++ |+|||..|.++-. ..|+++|+.. +... .
T Consensus 124 ~l~a~ss-r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~--Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 124 NLFAVSS-RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ--FSPDGEQLFAGYK--RCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ceeeecc-ccCceeeeeccccccccchhhhhhHHhhhhheeEE--ecCCCCeEeeccc--ceEEEeeccCCCCCCcchhh
Confidence 5678888 9999999999999998887643 33445567888 9999999988876 7999999943 2211 1
Q ss_pred ----eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEE
Q 014475 76 ----KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIW 149 (424)
Q Consensus 76 ----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iw 149 (424)
+....+-+.|++|+| +.+.++.|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 122366789999999 5669999999999999998889999999999999999999999999999986 6689999
Q ss_pred eCCcccchhcccccccceEEeecCCcC-ceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEE
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIAL 226 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~ 226 (424)
|++. ...++..+..|.. .-..|.|.-+..+++|++|+.||.|++||+++ +..+..+. +...++.+++
T Consensus 279 DiR~----------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 279 DIRY----------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred eehh----------ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 9975 2334445555654 33455666555559999999999999999987 66454444 7889999999
Q ss_pred CCCCCEEEEEeCC
Q 014475 227 DPAEHVFYAGSRD 239 (424)
Q Consensus 227 ~~~~~~l~~~~~d 239 (424)
+|.=.++++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9997777776643
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=4.2e-20 Score=154.36 Aligned_cols=213 Identities=14% Similarity=0.196 Sum_probs=169.0
Q ss_pred eeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 117 KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 117 ~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
.+.+|.++|..+.|+| +.+.+++||.|.+|.||++....... ....++..+.+|...|.-++|+|... +.|+++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~----~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsa 150 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR----DLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSA 150 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc----CcccceEEEeecceeEEEEeecccch-hhHhhc
Confidence 3478999999999999 77889999999999999996543221 22356788999999999999999876 899999
Q ss_pred eCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeE
Q 014475 196 SEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT 273 (424)
Q Consensus 196 ~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 273 (424)
+.|.+|.+||+.+++.+..+.|+..|.+++|+.+|.++++.+.|.+|++||.+.+ +.+..-.+|.+ +..
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---------~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---------TVVSEGVAHEGAKPAR 221 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC---------cEeeecccccCCCcce
Confidence 9999999999999999999999999999999999999999999999999999998 45555566764 333
Q ss_pred EEEecCCCEEEEeC---CCCcEEEEeCCCCcE---EEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCCCCC
Q 014475 274 CLAYSTGDLLISGS---EDGMVRVWDPITHNI---VRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 274 ~~~~~~~~~l~t~~---~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~ 344 (424)
.+-...+.++-||- .+..+.+||..+-+. ..++. ..+.|.---|.+|...+ ++|-.|+.||.+.+....+
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 44333366444442 477899999876432 33343 23445555677887777 6677999999999987654
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=4.9e-20 Score=147.89 Aligned_cols=274 Identities=16% Similarity=0.214 Sum_probs=196.5
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----c---eeEEEEECCCCcee-----e---
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----S---GSILYWSWSKPQVE-----V--- 75 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~---g~i~vwd~~~~~~~-----~--- 75 (424)
.|..|.+-+++.+.....-+....+.+.|..++ -+|..+.+++.... . ..+.||.+..+... .
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 356777777765543322233444567788877 77776665544321 1 35789998754322 1
Q ss_pred ---eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeee-----ccccCCeEEEEEcc--CCcEEEEeeCCC
Q 014475 76 ---KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSE--DGSFLISGSEDG 144 (424)
Q Consensus 76 ---~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~-----~~~~~~i~~~~~~~--~~~~l~s~~~dg 144 (424)
...+-+.|.|+.|.|++..+++-. |..|.+|+++++.. ...+ ..|....++-+|+| +++.+++. .|+
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~ 193 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS 193 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence 112345899999999999998865 78899999988765 3333 23566788889998 77777776 478
Q ss_pred cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ceeeeee-cCccee
Q 014475 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVID 222 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i~ 222 (424)
++..||+++..+ ....-..|...+.++.|+|+.. .+|++++.||.|++||.+.. .++..+. |...+.
T Consensus 194 tl~~~D~RT~~~----------~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 194 TLQFWDLRTMKK----------NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred cEEEEEccchhh----------hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 999999987432 2223356888999999999875 78999999999999999864 4555555 888999
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEEcCCCCC--------------------CCCCcCceeeeeecccCcCeEEEEecC--
Q 014475 223 AIALDP-AEHVFYAGSRDGSIYIAALNAESP--------------------STSSYGMHIIGSLSDHSKAVTCLAYST-- 279 (424)
Q Consensus 223 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 279 (424)
++.|+| ..+++++|+.|..+.+|....-.. ...+..-..+.++..|+..|.+++|+.
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 999999 567888999999999997654321 001112234557788999999999998
Q ss_pred CCEEEEeCCCCcEEEEeCCC
Q 014475 280 GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~ 299 (424)
.-.+|+-+.||.+.|=.+..
T Consensus 343 PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred CeeEEEeccCceEEeecCCh
Confidence 55778889999998876553
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=1e-18 Score=156.23 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=175.5
Q ss_pred ceeEEEEECCC-Ccee--eeecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEccC-cce--eeeeccccCCeEEEEEcc
Q 014475 60 SGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRL--LKKWHAHYRAVTCLVFSE 132 (424)
Q Consensus 60 ~g~i~vwd~~~-~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~ 132 (424)
++.|.+|++.+ ++.. ......+....++++|++++|++++ .++.|.+|++.. ++. +.... ..+....+.|+|
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 49999999963 3322 2223456778899999999987764 478899999963 332 22222 234567899999
Q ss_pred CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCc
Q 014475 133 DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGR 210 (424)
Q Consensus 133 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~ 210 (424)
+++++++++. ++.|.+|++++.... ........ +......++++|++ +++ ++...++.|.+||+.+..
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~-------~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIP-------VAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCC-------CCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCC
Confidence 9998887764 789999999531100 01112222 22345667889887 555 455567999999997633
Q ss_pred eee-------eeecCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEE
Q 014475 211 LLR-------NIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLA 276 (424)
Q Consensus 211 ~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~ 276 (424)
.+. ..........+.|+|+++++++... ++.|.+|+++..... .+.+..+.. +......+.
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEE
Confidence 221 1223455678999999999988876 899999999743110 122222211 122334688
Q ss_pred ecC-CCEEEEeC-CCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475 277 YST-GDLLISGS-EDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH 340 (424)
Q Consensus 277 ~~~-~~~l~t~~-~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~ 340 (424)
++| +++++++. .++.|.+|++.... .+..+... .....+.++|+|++|+++.. ++.|.+|+++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999 88888885 47899999986543 22332221 24568999999999987764 8899999875
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.9e-19 Score=138.83 Aligned_cols=251 Identities=19% Similarity=0.211 Sum_probs=182.7
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCc----------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
.|.+-+++|.+++|++|..+|.|.+..+.+. ..+...++|.++|..++|. ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4556689999999999999999999988542 2344558999999999998 45777776 599999988
Q ss_pred Ccccchhcc--cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECC
Q 014475 152 LTVFEECES--QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP 228 (424)
Q Consensus 152 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~ 228 (424)
+...+.... ......+.+.-...--.|+++-..|.. +-+++++.|+.++-||+++|+..+.+. |.+.+.++.-..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 654331110 000011111111123467888888877 666777789999999999999999998 899999999877
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
....+++|+.||++++||.++.+........+....++.| ...|.+++.+ .+++++|+ ...+.+|++++.++...|.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEe
Confidence 7778999999999999999998543222211222223333 3457777765 67888776 4569999999999988887
Q ss_pred ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
-.+++..+.|..| .+++++....+.-|.+.+.
T Consensus 245 -ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 245 -IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -cccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 4578888899765 6777888888888887743
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=4.3e-19 Score=162.32 Aligned_cols=270 Identities=20% Similarity=0.243 Sum_probs=197.7
Q ss_pred CCceEEEeCCCC-ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-------eeecCCCCe
Q 014475 12 DTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPI 83 (424)
Q Consensus 12 dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~~~~~~v 83 (424)
++.+.|||+... .+...+. ....|.|+. |+|....++++|..+|.|.+||+...... ....|..++
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~----~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE----SPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred CceEEEEecCCCCCceEEEe----cCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 457999999876 3444443 346688888 99988888888777799999999876542 223478899
Q ss_pred eEEEECCCC--CEEEEecCCCcEEEEEccCcceee------eec------cccCCeEEEEEcc-CCcEEEEeeCCCcEEE
Q 014475 84 KPIAANSHG--TYIAGGGQSGDIYMWEVASGRLLK------KWH------AHYRAVTCLVFSE-DGSFLISGSEDGCVRI 148 (424)
Q Consensus 84 ~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~------~~~------~~~~~i~~~~~~~-~~~~l~s~~~dg~i~i 148 (424)
+.+.|-.+. .-+++++.||.|..|+++.-.... ... .....+++++|.+ +...+++|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 999997654 449999999999999886442211 111 1234688999988 6678999999999877
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeEEEE
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIAL 226 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~ 226 (424)
-+......... ........+..|.++|.++.++|-.. ..+++++ |.+++||... ...++..+. ....+++++|
T Consensus 375 ~~r~g~~~~~~---~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 375 GCRKGYTPAPE---VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EeccCCccccc---ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 44332111110 11123445677999999999999874 4445555 9999999987 555555555 5667999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
||. ...|+++..+|.|.+||+..... .++....-+....+.+.|++ +..|++|...|.+.+|++..
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 995 56788888999999999987652 34445544567778889999 99999999999999999864
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.9e-18 Score=152.56 Aligned_cols=268 Identities=12% Similarity=0.141 Sum_probs=174.0
Q ss_pred CCCceEEEeCCC-Cc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Cceeee--ecCCCCee
Q 014475 11 ADTGIGCWDLES-GA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVK--SLPAEPIK 84 (424)
Q Consensus 11 ~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~~~--~~~~~~v~ 84 (424)
.++.|.+||+.+ |+ .++++... .....+. ++|++++|++++..++.|.+|+++. +..... ........
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecC----CCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 589999999974 33 33444321 2344556 9999999887766559999999973 333222 22344667
Q ss_pred EEEECCCCCEEEEecC-CCcEEEEEccCc-c---eeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchh
Q 014475 85 PIAANSHGTYIAGGGQ-SGDIYMWEVASG-R---LLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 85 ~~~~s~~~~~l~~~~~-dg~v~iwd~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 158 (424)
.++|+|+++++++++. ++.|.+|++++. . .+..+. +.....+++++|+++++++++ .++.|.+||+.+.....
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998888764 788999999643 2 222222 334567889999998886554 56899999996521100
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCC--Cc--eeeeee-cC------cceeEEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLK--GR--LLRNIV-FP------SVIDAIAL 226 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~-~~------~~i~~~~~ 226 (424)
. ......... .......+.|+|++ ++++++.. ++.|.+||++. ++ .+..+. .+ .....+.+
T Consensus 163 ~----~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 163 A----QEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred c----cCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 0 000001111 12345678999998 77777765 89999999973 32 222222 11 12336889
Q ss_pred CCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-CCcEEEEeCC
Q 014475 227 DPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDPI 298 (424)
Q Consensus 227 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~ 298 (424)
+|++++++++.. ++.|.+|+++..... ...+..... ......+.++| +++|+++.. +++|.+|++.
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999999864 689999999654211 122222221 13455789999 888887764 8999999874
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.8e-20 Score=162.33 Aligned_cols=255 Identities=21% Similarity=0.240 Sum_probs=190.6
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---------eeeeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
..|..++..++ |.|....+++++.+ |++.+|++++.. ......|.++|.|+++.+++..+.+|+.||+
T Consensus 291 ~s~~d~ir~l~--~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 291 RSHDDCIRALA--FHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred ecchhhhhhhh--cCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 34667888888 99999999999998 999999994311 1133468999999999999999999999999
Q ss_pred EEEEEccCc----------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 104 IYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 104 v~iwd~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
|+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+...... +......
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----------~~f~~~~ 437 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----------CTFGEPK 437 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----------cccCCcc
Confidence 999965421 23456789999999999999888999999999999999854211 1111111
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
..+.-.++.+..... ...++...-+.-.+.++.....+..+. ....+..+.++|...+.+++..|+.|+++
T Consensus 438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 112223333332211 233333333444445554444444433 12457888999999999999999999999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (424)
|..++ .++.....|...++++++.| +.+|++++.|+.+++|.+....++.....|.
T Consensus 517 dn~~~---------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 517 DNKTG---------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred ccccc---------ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99997 66778888999999999999 9999999999999999998888877766664
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=157.53 Aligned_cols=262 Identities=15% Similarity=0.172 Sum_probs=192.0
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEE-C-------CCCCEEEEecCCCcEEE
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA-N-------SHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~-s-------~~~~~l~~~~~dg~v~i 106 (424)
+...+.|+. |+.+...+.++..+ ..+.-|++..........+...+....+ - .....++.++.||.+.|
T Consensus 13 ~~e~vc~v~--w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVD--WSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cceeEEeec--ccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 345566777 88887776666554 6666666665544433333222222111 1 12346888899999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
.+ +.++.......|.+.+.+-.|+|+|.-|++++.||.|++|.-.. ....++.....+|.|++|.|+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG------------MLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG------------MLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc------------hHHHHHhhcCceeEEEEECCC
Confidence 87 67888888899999999999999999999999999999998633 222334456779999999999
Q ss_pred CceeEEEEEeCCCcEEEEecCCC-ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 187 GVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
.+ +.+++.+ +.+.|=.+... ++++--.|++-|.++.|+|..+.+++|+.|-+.++||-... .+...
T Consensus 157 S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------~Lf~S 223 (737)
T KOG1524|consen 157 SN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------NLFTS 223 (737)
T ss_pred CC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------ccccC
Confidence 84 4444433 45666665544 34444449999999999999999999999999999998873 46667
Q ss_pred cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 266 ~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
..|+.+|++++|+|...++.++.+ ++|+ -+...+.|..++||+||..+++|...|.+.+=
T Consensus 224 ~~~ey~ITSva~npd~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPEKDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred Chhccceeeeeeccccceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 789999999999997666666542 3441 12345789999999999999999999987643
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.4e-19 Score=164.37 Aligned_cols=276 Identities=16% Similarity=0.253 Sum_probs=196.7
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeec----CCCCeeEEEECC--CCCEEEEecCCCcEEEEEccCc-----ce
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL----PAEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASG-----RL 114 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~----~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~-----~~ 114 (424)
|+|-...++++... -.|+|||++.++...... ....|+.+.+-. |..++++|+.||.|+||+--.. +.
T Consensus 1072 ~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred ecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence 88888888888866 799999999887653332 356788888854 5678999999999999975322 22
Q ss_pred eeeec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEc
Q 014475 115 LKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYG 186 (424)
Q Consensus 115 ~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 186 (424)
+..+. +..+.=.-+.|..+..+|++++.-..|+|||... ......+ .+....++++.-+..
T Consensus 1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----------E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-----------EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-----------ceeEeecccCCCccceeeccccc
Confidence 22221 1112224466777666677776678999999955 2222222 234556666665544
Q ss_pred CceeEEEEEeCCCcEEEEecCCCce---eeeee-cCcc--eeEEEECCCCCE-EEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRL---LRNIV-FPSV--IDAIALDPAEHV-FYAGSRDGSIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~-~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (424)
. ++.+++|..||.|++||.+.... +.... |... |..+.+.+.|-- +++|+.+|.|++||++.....
T Consensus 1220 ~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------ 1292 (1387)
T KOG1517|consen 1220 H-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------ 1292 (1387)
T ss_pred C-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------
Confidence 3 38999999999999999886543 22222 5544 999999886654 999999999999999985211
Q ss_pred eeeeeeccc---CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------CCCeeEEEEEecCceeeec
Q 014475 260 HIIGSLSDH---SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-------KGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 260 ~~~~~~~~~---~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~ 328 (424)
.......| .+..+++..++ ...+|+|+. +.|+||++. |+.+..++.+ .+.+.+++|+|....||+|
T Consensus 1293 -~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1293 -TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred -ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 11122222 23599999999 889999998 999999976 6666555432 3478999999999999999
Q ss_pred cCCCceeeccCCCCC
Q 014475 329 SFSNPHTSSRRHGSQ 343 (424)
Q Consensus 329 ~~d~~i~iw~~~~~~ 343 (424)
+.|..|.+|......
T Consensus 1370 ~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCceEEEeecCCcC
Confidence 999999999876543
No 187
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=6.3e-19 Score=144.18 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=206.6
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.+|.... .|+.|.+|++...+-...+... ..++.+.. |+|+|+.++..+.-+-.|.||.+.+............
T Consensus 62 ~ilC~~y-k~~~vqvwsl~Qpew~ckIdeg---~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~ 135 (447)
T KOG4497|consen 62 HILCVAY-KDPKVQVWSLVQPEWYCKIDEG---QAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN 135 (447)
T ss_pred eeeeeee-ccceEEEEEeecceeEEEeccC---CCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEecccccC
Confidence 5677777 9999999999988877777643 35677777 9999988887777669999999999888777777888
Q ss_pred eeEEEECCCCCEEEEecCCCc---EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccch
Q 014475 83 IKPIAANSHGTYIAGGGQSGD---IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEE 157 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~ 157 (424)
+..++|+|||++.+..+.-.. +.|.....-..++.+....-..+.+.|+|||+.|++-.. +-.|..|.
T Consensus 136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe------- 208 (447)
T KOG4497|consen 136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------- 208 (447)
T ss_pred ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-------
Confidence 899999999999988765322 333222333455556656667788999999887765322 11111111
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------------------
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------------------- 216 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------------------- 216 (424)
..-.+..+.|+|.+ ++++.|+.|+.+++.+--+.++..++-
T Consensus 209 ----------------~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 209 ----------------RGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred ----------------eccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 22467778899987 899999999998886542222111110
Q ss_pred ----------------------------------------------cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcC
Q 014475 217 ----------------------------------------------FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALN 248 (424)
Q Consensus 217 ----------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~ 248 (424)
....+..++|++|..++++-.+. +.+.+||++
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence 01146678999999988886543 578999999
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 327 (424)
..+ +...-....+|.+..|+| ...|+.+.....+++|...-...+.. ....-.|..+.|.-+|..++.
T Consensus 351 ~l~----------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l 419 (447)
T KOG4497|consen 351 NLK----------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVL 419 (447)
T ss_pred hhh----------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEE
Confidence 853 333334567899999999 56666666677799999775444443 333468999999999999998
Q ss_pred ccCCCc
Q 014475 328 GSFSNP 333 (424)
Q Consensus 328 ~~~d~~ 333 (424)
.+.|--
T Consensus 420 ~~kDaf 425 (447)
T KOG4497|consen 420 CGKDAF 425 (447)
T ss_pred EcCCce
Confidence 887764
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=159.67 Aligned_cols=339 Identities=14% Similarity=0.106 Sum_probs=228.9
Q ss_pred eEEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475 2 ELLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA 80 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~ 80 (424)
|.++|+|. .||.|.+|.--. ...-.+.....=|.+.|.+++ |+++|.+|++||.. |.+.+|.+.+++..+.....
T Consensus 217 ~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLg 292 (792)
T KOG1963|consen 217 ERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLG 292 (792)
T ss_pred cceEEEec-cCCcEEEEeccccccccccceEEEecccccceeE--EecCCceEeecccc-eEEEEEeecCCCcccccccC
Confidence 57899999 999999998432 111112222233667899999 99999999999998 99999999999987888889
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-----------ccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
++|..+.+|||+.+.+....|..|.+....+.+...++.+ ..+-.+.++++|..+.++-.+..|.|.+|
T Consensus 293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY 372 (792)
T ss_pred CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence 9999999999999999999999999998766554444332 24456788999977778888899999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------C--CcEEEEecCCCce----eeee
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------D--RTCKVWSLLKGRL----LRNI 215 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--------d--~~v~iwd~~~~~~----~~~~ 215 (424)
|+.+.....+..............+...++.++.+..+ .+++|.-. | -.+++|-...... ...+
T Consensus 373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g--s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG--SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred eccccceeeeEEEEeecccCCcceeEEeeeeehhhccc--eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99764332211110000000001233456666666665 78877642 3 3577887654332 2223
Q ss_pred e--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCC-CCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475 216 V--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPS-TSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 216 ~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
. |...+...++.+ ....+++++.||.+++|-+...... .....+.+...-.-|..++++++|+.+.-+++.+.|+
T Consensus 451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 2 555555555443 3337899999999999999554332 2222344444444589999999999944566667899
Q ss_pred cEEEEeCCC-CcEEEEEeccCCCeeEEEEEecC--ceeeeccCCCceeeccCCCCCCCC
Q 014475 291 MVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 291 ~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
+|.+||..+ ............++..+.+..+. ...+.....+.+.+|++....+.-
T Consensus 531 ~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 531 TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 999999998 44444444444566666555432 123444566788899987665543
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=146.34 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=193.9
Q ss_pred EEEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC-------
Q 014475 3 LLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS------- 69 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~------- 69 (424)
+.||||+ .|..|+||-+..+. .+.-+.....|...|.++. |+|+|..||+++.+ |.|.+|...
T Consensus 27 ~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR--f~p~gelLASg~D~-g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 27 NKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR--FSPDGELLASGGDG-GEVFLWKQGDVRIFDA 102 (434)
T ss_pred cceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE--EcCCcCeeeecCCC-ceEEEEEecCcCCccc
Confidence 4799999 99999999987543 2333344556778888888 99999999999998 999999876
Q ss_pred -C-----C-cee---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475 70 -K-----P-QVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (424)
Q Consensus 70 -~-----~-~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 139 (424)
+ + ... ....|...|..++|+|+++++++++.|..+++||+..|.....+..|...+..++|.|-++++++
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence 2 1 111 22347899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEEeCCcccchhccc----------ccccceEEee--cCCcCceeEEEEEEcCceeEEEEEeC----CCc---
Q 014475 140 GSEDGCVRIWSLLTVFEECESQ----------RASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE----DRT--- 200 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~----d~~--- 200 (424)
-+.|...+.+++.......... .......+.+ ..-..-...++|+|+| ..+++... ++.
T Consensus 183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG--~llvtPag~~~~g~~~~~ 260 (434)
T KOG1009|consen 183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG--SLLVTPAGLFKVGGGVFR 260 (434)
T ss_pred hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC--cEEEcccceeeeCCceee
Confidence 9999877777664321110000 0000000100 0111223446778887 67765432 222
Q ss_pred --EEEEecCC-Cceeeeee-cCcceeEEEEC------------------CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 201 --CKVWSLLK-GRLLRNIV-FPSVIDAIALD------------------PAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 201 --v~iwd~~~-~~~~~~~~-~~~~i~~~~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
.++++-.. .++...+. ...+...+.++ |.+-.+++++. ..+++||.+...
T Consensus 261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~------- 332 (434)
T KOG1009|consen 261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE------- 332 (434)
T ss_pred ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccccc-------
Confidence 23333221 12222222 12223333333 23344555654 579999999864
Q ss_pred ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475 259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
.....-.-|-..|+.++|++ |..++..+.||...+-.++..++-
T Consensus 333 -P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 333 -PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 22223334889999999999 999999999999888776655443
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=6.1e-18 Score=140.54 Aligned_cols=234 Identities=15% Similarity=0.190 Sum_probs=176.4
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC--CcEEEEeCCcccchh
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--GCVRIWSLLTVFEEC 158 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~ 158 (424)
..+..+.|+.+...|..|+.|| .++|..+.-............|..+-|+. .+++..+.+ +.+++.+...
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk----- 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKK----- 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEccc-----
Confidence 4567777999999999999998 78888765544333333344566677763 455555443 3488888854
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCcceeEEEECCCCCEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~ 234 (424)
...+..+. ...+|.++.++.. +|+++-++. |.|||+++.+++.++. ++..+.++..++.+.+++
T Consensus 78 ------~~~ICe~~-fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 78 ------KTTICEIF-FPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA 145 (391)
T ss_pred ------CceEEEEe-cCCceEEEEEccc----eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence 22222222 4567888888664 455555444 9999999999999887 233455555555666887
Q ss_pred EE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc-EEEEeCCCCcEEEEEeccC
Q 014475 235 AG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 235 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~-i~iwd~~~~~~~~~~~~~~ 310 (424)
.- ...|.|.+||..+- +++..+..|.+++.+++|++ |.+|||+++.|+ ||++.+.+|+.+.+|+...
T Consensus 146 yp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred ecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 63 35789999999985 67888889999999999999 999999999997 7999999999999998543
Q ss_pred --CCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 311 --GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 311 --~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
..|.+++|+|++++|++.|+.++|.++++....
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 378899999999999999999999999998665
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.8e-19 Score=154.18 Aligned_cols=214 Identities=12% Similarity=0.211 Sum_probs=158.3
Q ss_pred CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECC--CCCEEEEecCCCcEEEEE
Q 014475 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd 108 (424)
.+|.+.|.|++ |..+|.+|++|+.| -.+.|||.-..+.. +...|...|.++.|-| +.+++++|..|..|+++|
T Consensus 47 ~GH~GCVN~Le--Wn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLE--WNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceeccee--ecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 45667899999 99999999999987 99999998755544 5567899999999998 577899999999999999
Q ss_pred ccCc----------ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475 109 VASG----------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (424)
Q Consensus 109 ~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (424)
+... +....+..|...|..++-.|++ +.+.+++.||+++-+|++........... ...+..+...--.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~-~~~l~ny~~~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC-PSILVNYNPQLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc-cHHHHHhchhhhe
Confidence 9742 3445567899999999999987 78999999999999999763321111100 1111122222345
Q ss_pred eeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--------c----------eeeeee--c-----------CcceeEEEE
Q 014475 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------R----------LLRNIV--F-----------PSVIDAIAL 226 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~----------~~~~~~--~-----------~~~i~~~~~ 226 (424)
..++.++|..+ .+|++|+.|-..++||.+.. . ++..+. | ...++-++|
T Consensus 203 lk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 203 LKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 67888888765 89999999999999995321 1 112121 0 012567789
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 227 DPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
+|+|.-|++.-..-.|+++|+...+
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCC
Confidence 9999988888777789999886543
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-18 Score=164.27 Aligned_cols=304 Identities=16% Similarity=0.189 Sum_probs=206.0
Q ss_pred EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-------eee-cCCCCeeEEEEC
Q 014475 18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKS-LPAEPIKPIAAN 89 (424)
Q Consensus 18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-------~~~-~~~~~v~~~~~s 89 (424)
|+.+ |..+..+..|...+..+.. -++.+.++++++.| |+|++|+..+-... ... ....++.++.+.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~----s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAV----SSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCcc-ceEeehhhhccccccceee----cCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 7754 8888888887766654443 33566888888887 99999998743221 111 257799999999
Q ss_pred CCCCEEEEecCCCcEEEEEccCcc-------eeeeeccc-cC-CeEEEEEcc-CCc-EEEEeeCCCcEEEEeCCcccchh
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGR-------LLKKWHAH-YR-AVTCLVFSE-DGS-FLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~-~~-~i~~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
+.++.+|+++.||.|.+.+++... ..+....+ .+ .+..-+|.. ... .++.+...+.|..||+++..
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--- 1184 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--- 1184 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh---
Confidence 999999999999999999987521 11111212 22 233344433 233 68888889999999997732
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--cceeEEEECCCC---CEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAE---HVF 233 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~---~~l 233 (424)
...........+.|++++.+|.+ ++++.|+..|.+.+||++-+.++....++ .+++.++.+|-. ...
T Consensus 1185 ------~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1185 ------DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred ------hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence 22233345567899999999998 89999999999999999999988888744 677888877732 344
Q ss_pred EE-Ee-CCCcEEEEEcCCCCCCCCCcCc---eeee-eec------ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 234 YA-GS-RDGSIYIAALNAESPSTSSYGM---HIIG-SLS------DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 234 ~~-~~-~dg~i~i~d~~~~~~~~~~~~~---~~~~-~~~------~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
++ ++ ..+.+.+|++.++......... ..+. ... .+.-......+.. +.++++|+.|..|+.||....
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 44 44 5778999999887532111100 0000 000 1111222233333 889999999999999997543
Q ss_pred cEE-----------------------------EE-------------------E--------eccCCCeeEEEEEecC-c
Q 014475 301 NIV-----------------------------RM-------------------F--------RLAKGPVNNILVVRRP-L 323 (424)
Q Consensus 301 ~~~-----------------------------~~-------------------~--------~~~~~~v~~l~~s~~~-~ 323 (424)
+.. .. . ..|..+|+++++.... .
T Consensus 1337 ~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~ 1416 (1431)
T KOG1240|consen 1337 EISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQP 1416 (1431)
T ss_pred ccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCcc
Confidence 221 00 0 0466788888887544 5
Q ss_pred eeeeccCCCceeecc
Q 014475 324 YLNLGSFSNPHTSSR 338 (424)
Q Consensus 324 ~l~~~~~d~~i~iw~ 338 (424)
+|++++.||.|++|.
T Consensus 1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred EEEEecCCCeeeecC
Confidence 789999999999995
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=2.8e-17 Score=146.51 Aligned_cols=323 Identities=12% Similarity=0.104 Sum_probs=204.0
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
++++++-. .+|.|.|.|.++.+.+.++...... -..+. |+|||+++.+++.+ |.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~--~s~Dgr~~yv~~rd-g~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVER-GSGSVAVIDGATNKVVARIPTGGAP---HAGLK--FSPDGRYLYVANRD-GTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTE---EEEEE---TT-SSEEEEEETT-SEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCc---eeEEE--ecCCCCEEEEEcCC-CeEEEEECCcccEEEEEecCC
Confidence 35566666 7999999999999999999764321 12234 89999999999876 999999999999877777777
Q ss_pred CeeEEEECCCCCEEEEec-CCCcEEEEEccCcceeeeeccc-------cCCeEEEEEccCCcEEEEeeC-CCcEEEEeCC
Q 014475 82 PIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL 152 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 152 (424)
....+++|+||++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....++..-. .+.|.+-|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 889999999999999875 5789999999999988877532 345778888887776665555 4788888875
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCceeeeee-----cCcceeEEEE
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIAL 226 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~~~~~ 226 (424)
+. .......+ .......+..|+|++ +++ ++...++.|-++|..+++....+. ++.+...+ .
T Consensus 159 d~---------~~~~~~~i-~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-p 225 (369)
T PF02239_consen 159 DP---------KNLKVTTI-KVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-P 225 (369)
T ss_dssp TS---------SCEEEEEE-E--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-E
T ss_pred cc---------cccceeee-cccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccc-c
Confidence 52 22222222 234455678899887 555 445667889999999988877664 33333333 2
Q ss_pred CCCCCEEEEEeCCCcE--EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe----CCCCcEEEEeCCC
Q 014475 227 DPAEHVFYAGSRDGSI--YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG----SEDGMVRVWDPIT 299 (424)
Q Consensus 227 ~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~----~~dg~i~iwd~~~ 299 (424)
+|....+...+..+.. -........ ......++.+..+.....+ ..+..+| ++++.+. ...+.|.++|.++
T Consensus 226 hp~~g~vw~~~~~~~~~~~~ig~~~v~-v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFAIPLIGTDPVS-VHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEE--TTT--STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred CCCcceEEeeccccceecccccCCccc-cchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 4433223222222222 222222111 1222335778888776666 7788899 8888887 4568999999999
Q ss_pred CcEEEEEeccC-CCeeEEEEEecCceeeeccCCC--ceeeccCCCCCCCC
Q 014475 300 HNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQLPP 346 (424)
Q Consensus 300 ~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~ 346 (424)
.+.+.++.... ..+..+.|+++|+++..+..++ .|.++|..+.+...
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 98888876433 3699999999999775544333 69999998776543
No 194
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=3.7e-19 Score=148.76 Aligned_cols=245 Identities=16% Similarity=0.219 Sum_probs=179.7
Q ss_pred eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCc
Q 014475 75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGC 145 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~ 145 (424)
....|.++|..++|+| +.+.||+|++|.+|.||.+..+ +.+..+.+|...|--++|+| -.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4457899999999999 6788999999999999999654 45677889999999999999 4567899999999
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC-cceeE
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-SVIDA 223 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~-~~i~~ 223 (424)
|.+||+.++. .+.++. |...|.++.|+.+| .+|++++.|+.|++||.++++.+..-. |. .....
T Consensus 156 v~iWnv~tge-----------ali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 156 VSIWNVGTGE-----------ALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred EEEEeccCCc-----------eeeecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 9999997632 334445 99999999999999 899999999999999999999888774 33 34556
Q ss_pred EEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCC
Q 014475 224 IALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI 298 (424)
Q Consensus 224 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~ 298 (424)
+.|-.++..+-+|. .+..+-+||..+-... -...++ .....|.-=.|.+ .+ ..++|-.|+.||-|.+.
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCc------ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 67777888555553 4678999998775421 112222 2334555555667 44 44556689999999988
Q ss_pred CCcE-EEEEec--cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 299 THNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 299 ~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
...+ ++.+.. ...+-..+.|.|.. -+-.+..-..+++++...
T Consensus 295 ~d~P~~hyln~f~S~epQRG~g~mPKR--Gl~Vs~cEI~rfyKl~~~ 339 (472)
T KOG0303|consen 295 NEPPFVHYLNTFSSKEPQRGMGFMPKR--GLDVSKCEIARFYKLHER 339 (472)
T ss_pred CCCceeEEecccccCCccccccccccc--cccchHHHHHHHHHhhcc
Confidence 7653 333322 34567778887753 223333445566666655
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1e-17 Score=131.46 Aligned_cols=267 Identities=15% Similarity=0.224 Sum_probs=183.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceE-------EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQ-------LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE- 74 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~- 74 (424)
.+|++|+ .+|+|.+..+.+-..- ..+-..++|...+..++ |. ...|++++. |.|+=|.+......
T Consensus 23 ~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~--f~--d~~Lls~gd--G~V~gw~W~E~~es~ 95 (325)
T KOG0649|consen 23 QYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLA--FH--DDFLLSGGD--GLVYGWEWNEEEESL 95 (325)
T ss_pred eEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeee--ee--hhheeeccC--ceEEEeeehhhhhhc
Confidence 4688999 9999999997642100 11112245666777777 76 445666654 99999998743320
Q ss_pred -----ee---e-----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee
Q 014475 75 -----VK---S-----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141 (424)
Q Consensus 75 -----~~---~-----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 141 (424)
+. . ..--.|+++-..|..+-++.++.|+.++.||+++|+..+++++|.+.|.++.--.....+++|+
T Consensus 96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence 10 0 1234689999999777777777899999999999999999999999999999865556799999
Q ss_pred CCCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc
Q 014475 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV 220 (424)
Q Consensus 142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 220 (424)
.||++++||.++.......+..+.. ..+..| ...|.+++.+. .++++|+ ...+.+|.++..++...+..+.+
T Consensus 176 EDGtvRvWd~kt~k~v~~ie~yk~~--~~lRp~~g~wigala~~e----dWlvCGg-Gp~lslwhLrsse~t~vfpipa~ 248 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIEPYKNP--NLLRPDWGKWIGALAVNE----DWLVCGG-GPKLSLWHLRSSESTCVFPIPAR 248 (325)
T ss_pred CCccEEEEeccccceeEEeccccCh--hhcCcccCceeEEEeccC----ceEEecC-CCceeEEeccCCCceEEEecccc
Confidence 9999999999875432222111111 112222 23455555433 5777766 45799999999999999999999
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEE
Q 014475 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVW 295 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iw 295 (424)
+..+.|. ...+++++..+.+.-|.+... ............++..|+. -++|-.++....+.|+
T Consensus 249 v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 249 VHLVDFV--DDCVLIGGEGNHVQSYTLNGV----------LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeEeeee--cceEEEeccccceeeeeeccE----------EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9999994 556888888888999988763 2223333334445555543 4556566666666665
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=155.36 Aligned_cols=299 Identities=15% Similarity=0.164 Sum_probs=223.9
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEECC--CCCEEEEecCCCcEEEEEc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~ 109 (424)
.|.+.|..+. |...|..+++++.| ..|.+||+....... ...|...|..-.|-| +.+-+++.+.||+|++=.+
T Consensus 140 ~H~GcVntV~--FN~~Gd~l~SgSDD-~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 140 KHKGCVNTVH--FNQRGDVLASGSDD-LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CCCCccceee--ecccCceeeccCcc-ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 4555666666 99999999999987 999999998776654 456778888888888 4567899999999998776
Q ss_pred cCc-ce--eeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC---ceeEEE
Q 014475 110 ASG-RL--LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIV 182 (424)
Q Consensus 110 ~~~-~~--~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~ 182 (424)
... .+ ...+..|.++|..++.-|+ ..-|.+++.|+.+.-+|++....... ...-..+.. ....++
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~--------~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK--------FVCREADEKERVGLYTIA 288 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce--------eeeeccCCccceeeeeEe
Confidence 433 22 3455679999999999884 45689999999999999977432111 111222233 567788
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCce------eeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRL------LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
..|... ..+++++.|..+++||.+.-.. +..+. .+..|++++++.++.-+++...|-.|+++.-..
T Consensus 289 ~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 289 VDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred cCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 888764 6899999999999999874221 12221 345799999998888888888899999995544
Q ss_pred CCCCCCCc---Cceeee-eecccCc--CeEEEEe-cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 250 ESPSTSSY---GMHIIG-SLSDHSK--AVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 250 ~~~~~~~~---~~~~~~-~~~~~~~--~i~~~~~-~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
+....... ....+. .+++|.. .|..+-| .| ..++++|+.=|.|.||+-.+++.++-+.+...-|+||.-+|.
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence 33211000 011222 2677754 4666655 56 899999999999999999999999999988889999999999
Q ss_pred CceeeeccCCCceeeccCCCCCC
Q 014475 322 PLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 322 ~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
-..||+.+-|..|+||...+.+.
T Consensus 448 ~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred CchhhccCCccceeeecCCcccc
Confidence 99999999999999999865544
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=2.2e-18 Score=140.53 Aligned_cols=244 Identities=16% Similarity=0.143 Sum_probs=191.4
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
..++|+|.+|++|+..+|++.....|.||..... +...+++.|...|+++.|.|..+.|++|+.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~- 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG- 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence 4679999999999999999999999999998665 467788999999999999999999999999999999998432
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-----eeeecCcceeEEEECCCC
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-----RNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~ 230 (424)
....+...+..++...+++.|+|.+ +.|++|+....|.+|-++...-- ....+...|.++.|+|++
T Consensus 88 -------~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 88 -------GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred -------CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 4556666777899999999999998 89999999999999988654422 122356789999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCC----CCCCcC-----ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 231 HVFYAGSRDGSIYIAALNAESP----STSSYG-----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~----~~~~~~-----~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
-++++|+.|+..+++..--... ...+.+ ..++.++....+.+..+.|+| |+.|+-.+.|+.+.+=|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999999987532211 111111 122334445678899999999 999999999999999997766
Q ss_pred c-EEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475 301 N-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 301 ~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
. .+.......-|..++.|-.+. .++.++.|..
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~ 271 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISEN-SVVAAGYDCG 271 (361)
T ss_pred chhccchhhccCCceeeEeecCC-ceeecCCCCC
Confidence 4 445554444788888887654 4445555533
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.4e-16 Score=132.49 Aligned_cols=281 Identities=15% Similarity=0.199 Sum_probs=197.4
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc-eeEEEEECCCCceeeeecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~-g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.|..|+ .|| -++++.+.-.... + ....++..+. -.-...++|..+.++ ..+++.++.+...........+
T Consensus 19 ~lsvGs-~~G-yk~~~~~~~~k~~----~-~~~~~~~IvE--mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~ 89 (391)
T KOG2110|consen 19 LLSVGS-KDG-YKIFSCSPFEKCF----S-KDTEGVSIVE--MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS 89 (391)
T ss_pred EEEccC-CCc-eeEEecCchHHhh----c-ccCCCeEEEE--eecccceeEEEecCCCceEEEEEcccCceEEEEecCCc
Confidence 466677 666 5788876544411 1 1223455555 444455665555432 5699999998888888888899
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc---ccCCeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccch
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~ 157 (424)
|.++.++. +.|++.-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+++.= ...|.|.+||..+
T Consensus 90 IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n---- 162 (391)
T KOG2110|consen 90 ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN---- 162 (391)
T ss_pred eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc----
Confidence 99999975 456665554 599999999999887743 44556666666666788743 3468999999954
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCCCCEE
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVF 233 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 233 (424)
.+.+..+..|++++.+++|+++| .+|+|+++.|+ ||++.+.+|+.+..+. ....|.+++|+|++.+|
T Consensus 163 -------l~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 163 -------LQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred -------ceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 55677888999999999999999 99999999997 7899999999999987 45679999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcC------------------cee----------eeeecccCc---CeEEEEecC-CC
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYG------------------MHI----------IGSLSDHSK---AVTCLAYST-GD 281 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~----------~~~~~~~~~---~i~~~~~~~-~~ 281 (424)
++.+..++|++|.+........... ... ....+.... .+..+.-.+ ..
T Consensus 234 ~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~ 313 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIP 313 (391)
T ss_pred EEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCC
Confidence 9999999999999876432111100 000 001111111 223332223 67
Q ss_pred EEEEeCCCCcEEEEeCCC--CcEEEEEecc
Q 014475 282 LLISGSEDGMVRVWDPIT--HNIVRMFRLA 309 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~--~~~~~~~~~~ 309 (424)
.+..++.||.++.|.+.. |.....++.|
T Consensus 314 ~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 314 RVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred EEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 888899999999998753 5555555544
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=6.8e-18 Score=135.84 Aligned_cols=237 Identities=14% Similarity=0.195 Sum_probs=172.4
Q ss_pred CCCCceEEecceeecCCC-----ccccCCCCceeEEEEECCCCc--eee--------eecCCCCeeEEEECC-CCCEEEE
Q 014475 34 SPPHGLACVGQRFLASSQ-----LREQPSASSGSILYWSWSKPQ--VEV--------KSLPAEPIKPIAANS-HGTYIAG 97 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~-----~l~~~~~~~g~i~vwd~~~~~--~~~--------~~~~~~~v~~~~~s~-~~~~l~~ 97 (424)
.|+-.++-+- |.|+.. +||+++ ..+++|.+...+ ... ...+..++++..|+. +.+++.+
T Consensus 94 d~~YP~tK~~--wiPd~~g~~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHPYPVTKLM--WIPDSKGVYPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCccceE--ecCCccccCcchhhccc---CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 4555566666 888763 455544 589999987432 211 123467999999997 7889999
Q ss_pred ecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 98 GGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 98 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
.+-|-+..|||++++. ....+-.|.++|..++|...+ +.|++.+.||.+++||++... ....+..-..
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--------HSTIIYE~p~ 240 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--------HSTIIYEDPS 240 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--------cceEEecCCC
Confidence 9999999999999873 356678899999999999743 578999999999999997632 2222222223
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCC-ceeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCC
Q 014475 174 HTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 249 (424)
...+...++|++... +++++-..| ..|.+.|++.. .++..+. |.+.|+.++|.| ....+++++.|..+.+||+..
T Consensus 241 ~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 356777888887654 777776654 56999999864 3455555 999999999999 567899999999999999987
Q ss_pred CCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCC
Q 014475 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSE 288 (424)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~ 288 (424)
...... ..++.... -.+.|+.+.|++ ++.++.+..
T Consensus 320 ~~~~~~---~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 320 MPRENG---EDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccCC---CCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 532110 12222232 467899999998 888888764
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.5e-19 Score=164.48 Aligned_cols=280 Identities=17% Similarity=0.204 Sum_probs=216.2
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
+|-++|.|.. |...|.++++++.| ..++||..++..+.. ..+|.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus 188 gH~naVyca~--fDrtg~~Iitgsdd-~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 188 GHRNAVYCAI--FDRTGRYIITGSDD-RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhhheeeee--eccccceEeecCcc-ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 5667899999 99999999999987 999999998887653 4679999999999999999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.... ....+. . ......+.++.+...+ ..+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~-----y~prp~-~-~~~~~~~~s~~~~~~~--~~f 331 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI-----YVPRPL-K-FTEKDLVDSILFENNG--DRF 331 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc-----cCCCCC-C-cccccceeeeeccccc--ccc
Confidence 9999999999999999999843 7788999999998611000 000000 0 1122455666676666 788
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (424)
+|++.|+.-..|.+..-.. +...+.-+..+. ...+.+++-.+-.+.+|++-++ .....+.+|...
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDE 397 (1113)
T ss_pred ccccCCcccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccccc
Confidence 9999999988887642211 111111111111 1245566667778899999887 556778899999
Q ss_pred eEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 272 VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 272 i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+..+.++| .....+++.||...|||+-.|.+++......+.+....||+||..++....-|.++|....-++
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999 5566788999999999999998888765445778888999999999999889999988775443
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=138.02 Aligned_cols=273 Identities=14% Similarity=0.190 Sum_probs=186.8
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
+|.+|. .-|.|++|++.+.+....++.+. ...|+.+. ..|+ ..+.+-+.| +.+.+|++...... ..|.-.+
T Consensus 27 rL~sg~-~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq--~~p~-d~l~tqgRd-~~L~lw~ia~s~~i--~i~Si~~ 97 (323)
T KOG0322|consen 27 RLMSGL-SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQ--SIPN-DSLDTQGRD-PLLILWTIAYSAFI--SIHSIVV 97 (323)
T ss_pred hhhccc-ccceEEEEEeecCccchhhhhhc--cceeecee--ecCC-cchhhcCCC-ceEEEEEccCcceE--EEeeeec
Confidence 578888 99999999999988887777442 24566555 5566 567788887 99999999764432 2222344
Q ss_pred eEEEECCC-----C----CEEEEecCCC-cEEEEEccCcceeeee----ccccCCeEEEEEcc-CCc--EEEEeeCCCcE
Q 014475 84 KPIAANSH-----G----TYIAGGGQSG-DIYMWEVASGRLLKKW----HAHYRAVTCLVFSE-DGS--FLISGSEDGCV 146 (424)
Q Consensus 84 ~~~~~s~~-----~----~~l~~~~~dg-~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~-~~~--~l~s~~~dg~i 146 (424)
+++.|.+. + ..++.-++.. .+.+-|......+... .+..+.+.|..+.. ++. ++++|.++|.+
T Consensus 98 nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghv 177 (323)
T KOG0322|consen 98 NSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHV 177 (323)
T ss_pred cccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeE
Confidence 44444331 1 1122211111 0222222111111111 12345677777543 333 46788889999
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--cee--eeee-cCcce
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLL--RNIV-FPSVI 221 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~--~~~~-~~~~i 221 (424)
.+||+.++....+.. ...+.......|..++.++.+.+.. ..=++|+.+..+..|++... .+. ..+. ....+
T Consensus 178 v~wd~S~~~~~~~~~-~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv 254 (323)
T KOG0322|consen 178 VIWDLSTGDKIIQLP-QSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV 254 (323)
T ss_pred EEEEccCCceeeccc-cccccccchhhccCcceeeeechhh--cCCcCCCccccceeeeeccccCcccccceEEecCCCc
Confidence 999998753333222 2223345567799999999998765 55678888889999988643 221 1222 34568
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 222 DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 222 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
..+.+.||++.+++++.|++|++|+.++. .++..++-|.+.|++++|+| .+.+|+++.|+.|.+|++
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 89999999999999999999999999997 67888999999999999999 699999999999999986
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.7e-18 Score=140.35 Aligned_cols=255 Identities=12% Similarity=0.104 Sum_probs=188.1
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc------ceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG------RLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
.|.+.|+++.|+.++++|++|+.|..+++|+++.. +++.... .|...|.|++|.....++.+|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 47899999999999999999999999999998643 4444443 3668999999999889999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-ee---eeeecCcceeEEEE
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LL---RNIVFPSVIDAIAL 226 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~---~~~~~~~~i~~~~~ 226 (424)
+++ .....+..-....+.|..+..+|.. +.|++.+.++.|.+||.+..+ .. ..-..+.....+.|
T Consensus 134 iEt---------~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 134 IET---------KQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ccc---------ceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 976 3333333334445689999999986 899999999999999998765 22 22235677889999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE-E
Q 014475 227 DP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI-V 303 (424)
Q Consensus 227 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~-~ 303 (424)
+| ...+|++.+..+-+-+||.+........+.. ...+......-..+.|+| |+.|.+--....=.+||+-+.++ +
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~--~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSM--FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhc--cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 99 4567888888899999999987532211111 111222222335678999 88888877766677889887543 3
Q ss_pred EEEeccC-------CCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 304 RMFRLAK-------GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 304 ~~~~~~~-------~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
..+. |. ..+.+++|..|- .+++|+.+-.|.+|.+....-...
T Consensus 281 ~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 281 LKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred Eecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccC
Confidence 3443 22 257778887664 499999999999999975544333
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=9.1e-18 Score=154.70 Aligned_cols=230 Identities=15% Similarity=0.121 Sum_probs=164.6
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcce--eeeeccccCCeEEEEEccCCc
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRL--LKKWHAHYRAVTCLVFSEDGS 135 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~ 135 (424)
..|.+||.+.........+...+...+|||||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC
Confidence 79999999877665555677889999999999999887643 3699999988754 3333333 34689999999
Q ss_pred EEEEee-CCCcEEEE--eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCC-c
Q 014475 136 FLISGS-EDGCVRIW--SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKG-R 210 (424)
Q Consensus 136 ~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~-~ 210 (424)
.|+.++ .+|.+.|| |+.++ ....+..+...+....|+|++ +.|+ ++..++...+|++... .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~------------~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGG------------TPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASGG 326 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCC------------CeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCCC
Confidence 888764 68876666 54331 123445566678889999998 5555 4456788888887532 2
Q ss_pred eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
....+.+.. ....|+|+|+.++..+.++ +.+||+.++.. ..+ ...+ ......|+| +++|+.++.+
T Consensus 327 ~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-------~~l--t~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 327 GASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-------EVL--SSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-------EEe--cCCC--CCCCceECCCCCEEEEEEcC
Confidence 222233332 4578999999998887754 66699987641 111 1111 234577999 9999999999
Q ss_pred CcEEEEeC--CCCcEEEEEeccCCCeeEEEEEec
Q 014475 290 GMVRVWDP--ITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 290 g~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
+.+.+|++ .+|+.++.+..|.+.+...+|+|-
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 98888875 368888999888888999999984
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1.6e-17 Score=135.47 Aligned_cols=233 Identities=12% Similarity=0.177 Sum_probs=176.3
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
..|+|.+ |++|+..+|++-.. ..|.||...+.+. .....|...|++++|+|..+.|++++.|..-++|...++
T Consensus 11 ~pitchA--wn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 11 EPITCHA--WNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred Cceeeee--ecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 5689999 99999999999887 9999999887662 233568899999999999999999999999999998443
Q ss_pred ---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 113 ---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 113 ---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
+....+..++...+++.|+|+++.|++|+.-..|.||-++... .=....+.-+.+.+.|+++.|+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-------dWWVsKhikkPirStv~sldWhpnn-- 158 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-------DWWVSKHIKKPIRSTVTSLDWHPNN-- 158 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-------ceehhhhhCCccccceeeeeccCCc--
Confidence 3445566788999999999999999999999999999875411 1111112234577889999999998
Q ss_pred eEEEEEeCCCcEEEEecC-----C-------------Cceeeee-ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 190 ATIVSASEDRTCKVWSLL-----K-------------GRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~-----~-------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
-++++|+.|+.++++..- . |++..++ ...+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 899999999999999642 1 2233333 35678999999999999999999999999998776
Q ss_pred CCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d 289 (424)
.+ .+.......-+..++.|-..+.++.++.|
T Consensus 239 ~~--------~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 239 SE--------RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred ch--------hccchhhccCCceeeEeecCCceeecCCC
Confidence 41 22222222355556665444444444444
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-17 Score=156.54 Aligned_cols=267 Identities=12% Similarity=0.122 Sum_probs=186.3
Q ss_pred EECCCCceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEccCCcEE
Q 014475 66 WSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 66 wd~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
|+.++..+.....|...+..++.++. +.++++|+.||+|++|+.+.- +...++......+.++...++++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 44444434444557778888888875 499999999999999998643 2223344456789999999999999
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEE-EEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
|+++.||.|++.+++...... ........... ..+.+.++ ++........++.+..-+.+..||++.......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 999999999999996521100 00111111111 22333333 3333322237888888999999999988776666
Q ss_pred e---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--C--CEEEEeC-
Q 014475 216 V---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G--DLLISGS- 287 (424)
Q Consensus 216 ~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~l~t~~- 287 (424)
+ ..+.|++++.+|.+.++++|+..|.+.+||++-+.+ ....-..+..+|+.+..+| + ...++++
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~--------i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP--------ILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce--------eecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 5 457899999999999999999999999999998742 2222234567888888887 3 5566555
Q ss_pred -CCCcEEEEeCCCCcEEEEEeccC-----------------C--CeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 288 -EDGMVRVWDPITHNIVRMFRLAK-----------------G--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 288 -~dg~i~iwd~~~~~~~~~~~~~~-----------------~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
..+.|.+|++.+|.+...+.... . +.....+...+.++.+|+.|+.|+.||......
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 46789999999998777665331 1 122333444557899999999999999875543
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.5e-19 Score=152.80 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=195.5
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.-....+.++.+|++++.|+..|.|.-+|..++.+...+.. ...|.++.|..+.+++|++- ...++|||-.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~------- 199 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN------- 199 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC-------
Confidence 34567899999999999999999999999999999888864 45689999998888888775 4589999963
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
...++.+..| ..+..+.|-|.. .+|++++..|.++.-|+.+|+.+..+. ..+.+..++-+|-+..+-+|..
T Consensus 200 -----GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 200 -----GTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred -----CcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 3344555543 578889999987 789999999999999999999999887 5678889999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL 317 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 317 (424)
+|+|.+|..... .++..+..|.++|.++++.+ |.+++|.+.|..++|||++....+.++.. ..+...++
T Consensus 272 nGtVSlWSP~sk---------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls 341 (545)
T KOG1272|consen 272 NGTVSLWSPNSK---------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLS 341 (545)
T ss_pred CceEEecCCCCc---------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccc
Confidence 999999999886 55667778999999999999 99999999999999999999887777765 56788999
Q ss_pred EEecCceeeeccCCCceeeccC
Q 014475 318 VVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 318 ~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+|..| +++.+....+.+|.=
T Consensus 342 ~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 342 LSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred ccccc--ceeeecCCeeeeehh
Confidence 99776 444455667889953
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=9.3e-18 Score=154.64 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=163.4
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s 89 (424)
+..|.+||..... .+.+..+ ...+.... |+|+|+.++.++.++ ..|.+||+.+++........+....++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~---~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRS---SQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-ceEeccC---CCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 5789999986444 4445443 34566666 999999999876432 47999999887654333334455678999
Q ss_pred CCCCEEEEec-CCCcEEEE--EccCcceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccccccc
Q 014475 90 SHGTYIAGGG-QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 90 ~~~~~l~~~~-~dg~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
|||+.|+.+. .+|.+.|| |+.+++ ...+..+...+....|+|||+.|+.++ .+|...+|++.... .
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~---------~ 326 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG---------G 326 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC---------C
Confidence 9999888764 57765555 655554 445556777788999999999877555 57888888874311 1
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
. ...+ .+.. ....|+|++ +.++..+.++ +.+||+.+++...... ......+.|+|++++++.++.++...+|
T Consensus 327 ~-~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 327 G-ASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred C-eEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 1 1111 2322 356789998 7787777665 5669998887543222 2234567899999999999999988888
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
++.... ......+..|.+.+...+|+|
T Consensus 399 ~~~~~~-------G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 399 QLVSAD-------GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEEECC-------CCceEEccCCCCCCCCcccCC
Confidence 764321 144566777888888899988
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.6e-19 Score=164.37 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=194.8
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.|...|.|+.|...|.++++|+.|..++||..+++.++...++|.+.|+.++.+.+..++++++.|..|++|.+.+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~---- 263 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD---- 263 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC----
Confidence 4788899999999999999999999999999999999999999999999999999989999999999999999954
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee------eecCcceeEEEECCCCC
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN------IVFPSVIDAIALDPAEH 231 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~------~~~~~~i~~~~~~~~~~ 231 (424)
..++..+.+|++.|++++|+|-. +.+.||++++||.+ ..+... +.....+.++.+...+.
T Consensus 264 -------~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 264 -------GAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred -------CchHHHHhccccceeeeccCccc------cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc
Confidence 55677889999999999999863 67889999999987 111111 12345567778888888
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
.+++++.|+.-..|.+.... .+...+.-+..+. ..+.+++-.+-.+++|++.+|.+++.+.+|
T Consensus 330 ~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh 394 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH 394 (1113)
T ss_pred ccccccCCcccccchhhHhh---------------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc
Confidence 89999999988887765432 2223333333332 467777888889999999999999999999
Q ss_pred CCCeeEEEEEecCcee-eeccCCCceeeccCCCCCCCCC
Q 014475 310 KGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 310 ~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
..++..+.++|-...+ .+++.||...|||+-.+.+...
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 9999999999966555 6899999999999986655443
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=8.5e-18 Score=146.11 Aligned_cols=208 Identities=18% Similarity=0.228 Sum_probs=162.2
Q ss_pred CCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475 50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV 129 (424)
Q Consensus 50 ~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 129 (424)
...++.++.| |.+.+-+-...-......|.+.+.+-.|+|||.-|+++++||.|++|. ++|-+..++-....+|.|++
T Consensus 75 ~d~~~i~s~D-Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSND-GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCC-ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 3456677776 888888755544445567899999999999999999999999999998 67777777767788999999
Q ss_pred EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC
Q 014475 130 FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209 (424)
Q Consensus 130 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~ 209 (424)
|.|+.+-++-+.. +.+.|=.+. ....+..++.|.+-|.++.|++.. +.+++|++|-..++||-...
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~-----------~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLA-----------ANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGA 218 (737)
T ss_pred ECCCCCceEEecC-CeEEEeecc-----------cccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCc
Confidence 9998776665543 456665552 233456788999999999999988 89999999999999997655
Q ss_pred ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC
Q 014475 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE 288 (424)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~ 288 (424)
.+...-.|..+|++++|.|+ ..+++++.+ ++++ -....+.|..++|++ |..++.|..
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~--------------------~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF--------------------SSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee-eeee--------------------cCCCccceEEEEEcCCCceeecccc
Confidence 54455558999999999999 666666532 3331 112347799999999 999999998
Q ss_pred CCcEEEE
Q 014475 289 DGMVRVW 295 (424)
Q Consensus 289 dg~i~iw 295 (424)
.|.+.+=
T Consensus 277 ~G~v~~A 283 (737)
T KOG1524|consen 277 TGQLIVA 283 (737)
T ss_pred CceEEEe
Confidence 8887653
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.3e-18 Score=144.63 Aligned_cols=198 Identities=21% Similarity=0.308 Sum_probs=156.3
Q ss_pred EEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe
Q 014475 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (424)
Q Consensus 126 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd 205 (424)
.+++|+++|..+++++.||++|+|+..+ ...+.....|...|.++.|+|++ +.|++.+.| ..++|+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----------~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----------MLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----------chhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEE
Confidence 7899999999999999999999999733 33455667899999999999999 899999999 899999
Q ss_pred cCCCceeeeee---cCcceeEEEECCCC---CE--EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475 206 LLKGRLLRNIV---FPSVIDAIALDPAE---HV--FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (424)
Q Consensus 206 ~~~~~~~~~~~---~~~~i~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (424)
.+++..+.... .+.....+.|+.++ .+ ++.....+.|+.|++....... .-...........|++++.
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEE
Confidence 99996666554 34456677787766 22 3333455677777776543210 0112222233467999999
Q ss_pred cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 278 ~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
++ |++++.|+.||.|.|++..+-+.++.++ .|...|+.+.|+||.+++++.+.|....+-.+..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99 9999999999999999999988877654 6889999999999999999999999988888764
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-17 Score=141.43 Aligned_cols=198 Identities=23% Similarity=0.242 Sum_probs=149.3
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
.+++|+++|..+++|+.||++|||+..+...+.....|.+.|.++.|+||+++|++-+.| ..+||+.+++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 789999999999999999999999988888888888899999999999999999999999 899999988632211110
Q ss_pred ccceEEeecCCcCceeEEEEEEcCce--eEEEE-EeCCCcEEEEecCCCc------eeeeeecCcceeEEEECCCCCEEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVS--ATIVS-ASEDRTCKVWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~-~~~d~~v~iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
....-....+.|+.++.+ -++++ ....+.|+.||+.... ..+.+.....|.+++++++|++++
T Consensus 226 --------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 226 --------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred --------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 112223444556554311 12332 2334567776664322 122222456899999999999999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
.|+.||.|.+++...-+ .....-+.|...|+.+.|+| .+++++.+.|....+..+.-
T Consensus 298 lGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999998853 33344457999999999999 88999999898888877653
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.1e-16 Score=129.08 Aligned_cols=236 Identities=15% Similarity=0.253 Sum_probs=168.4
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC--CeEEEEEccCCcEEE-EeeCC------CcEEEEeCC
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--AVTCLVFSEDGSFLI-SGSED------GCVRIWSLL 152 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~-s~~~d------g~i~iwd~~ 152 (424)
...+++|+.|...+++|..+| .+||+.+.-+.....+.+.+ .+..+-|- .++|+ +|+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD- 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD- 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence 445699999999999998877 89999876443332222222 23333333 33443 34332 46999994
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeee---cCcceeEEEECC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV---FPSVIDAIALDP 228 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~---~~~~i~~~~~~~ 228 (424)
.+..++.++. ...+|.++.+.++ .+++.- .+.|.+|... +.+.++.+. .+....+++-..
T Consensus 83 ----------~k~~~i~el~-f~~~I~~V~l~r~----riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 83 ----------LKERCIIELS-FNSEIKAVKLRRD----RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ----------ccCcEEEEEE-eccceeeEEEcCC----eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 3344444443 5678999999875 344443 5789999987 556666665 233433333333
Q ss_pred CCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCc-EEEEeCCCCcEEEE
Q 014475 229 AEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRM 305 (424)
Q Consensus 229 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~-i~iwd~~~~~~~~~ 305 (424)
+..+|+. |..-|.|.+-|+..... .......+|...|.|++.+. |..+||+|..|+ |||||..+|+++..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 4444544 45678999999988642 13467789999999999998 999999999998 89999999999999
Q ss_pred Eecc--CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 306 FRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 306 ~~~~--~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
++.- ...|.+++|||+..+|+++|+-|++.|+.++....
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 8843 35899999999999999999999999999986543
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=6.7e-17 Score=132.45 Aligned_cols=282 Identities=13% Similarity=0.111 Sum_probs=193.3
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeeeeccccCC
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRA 124 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 124 (424)
|+|+|+++|++.. -.+.+=|..+-+.......-+.|.-+.|..|..+++++ ..++.|.+|++...+-...+.....+
T Consensus 16 fSp~g~yiAs~~~--yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 16 FSPCGNYIASLSR--YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred ECCCCCeeeeeee--eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 9999999999887 58888888877766555556788889999887776655 66889999999998888888888899
Q ss_pred eEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------
Q 014475 125 VTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------ 197 (424)
Q Consensus 125 i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------ 197 (424)
+..++|+|+|+.++ +...+-+|.+|.+.+.. . ..++-.+..+..++|++++ ++.+..+.
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~---------~---~~~~~pK~~~kg~~f~~dg--~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQK---------G---YLLPHPKTNVKGYAFHPDG--QFCAILSRRDCKDY 159 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEeccce---------e---EEecccccCceeEEECCCC--ceeeeeecccHHHH
Confidence 99999999996655 55668899999997621 1 1112222334556666666 44444332
Q ss_pred ------------------------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475 198 ------------------------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 198 ------------------------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (424)
+..+.+||---.-.+......-.+..++|+|.++++++|+.|+.+++.+-
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 22344555322222223334467889999999999999999999887653
Q ss_pred CCCCC-----------------------------------------------CCCCc----------CceeeeeecccCc
Q 014475 248 NAESP-----------------------------------------------STSSY----------GMHIIGSLSDHSK 270 (424)
Q Consensus 248 ~~~~~-----------------------------------------------~~~~~----------~~~~~~~~~~~~~ 270 (424)
-+-++ ....+ ..++.........
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 22111 00000 0001111222334
Q ss_pred CeEEEEecC-CCEEEEeCC--CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 271 AVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
.+..++|++ ..+++|-.+ -+.+-+||++..+.-..+. ...+|....|+|....|+.+.....+++|...+...
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 567799999 555555432 3569999999766555443 568999999999998898888888899999887544
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1e-16 Score=140.65 Aligned_cols=299 Identities=11% Similarity=0.109 Sum_probs=212.9
Q ss_pred CceEEEeCCCCceEEEeeC---------------------CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC
Q 014475 13 TGIGCWDLESGAEQLRYKS---------------------CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~ 71 (424)
..|+||++..|+.+..+-. --.++..-+.+. .+|||+++.+.|.---.|++||+...
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik--~s~DGqY~lAtG~YKP~ikvydlanL 84 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIK--VSPDGQYLLATGTYKPQIKVYDLANL 84 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeE--ecCCCcEEEEecccCCceEEEEcccc
Confidence 4689999887766543321 012333344555 99999998888766589999999887
Q ss_pred ceeeeecCC-CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEE
Q 014475 72 QVEVKSLPA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW 149 (424)
Q Consensus 72 ~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iw 149 (424)
.+.+..... +.|.-.-.+.|-..++.-..|.+|.+..- -|.. ..++ -...-..++++. +..+++.| ....|+-+
T Consensus 85 SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~h-y~~R-IP~~GRDm~y~~~scDly~~g-sg~evYRl 160 (703)
T KOG2321|consen 85 SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRH-YRTR-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRL 160 (703)
T ss_pred eeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCee-eeee-cCcCCccccccCCCccEEEee-cCcceEEE
Confidence 776655544 45555555555555555556777766432 2221 1111 112234566653 33444444 44578888
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc----------
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS---------- 219 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------- 219 (424)
+++. ...+..+....+.++++.+++.. .+|++|+.+|.|..||.+....+..+....
T Consensus 161 NLEq-----------GrfL~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 161 NLEQ-----------GRFLNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred Eccc-----------cccccccccccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 8854 55666677777899999999887 899999999999999999887777665322
Q ss_pred --ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEE
Q 014475 220 --VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRV 294 (424)
Q Consensus 220 --~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~i 294 (424)
.|+++.|+.+|-.+++|+.+|.+.|||++... ..+..-.+..-+|..+.|.+ .+.+++. ....++|
T Consensus 228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~ki 298 (703)
T KOG2321|consen 228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKI 298 (703)
T ss_pred cCcceEEEecCCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccceeeecccccCCCceEEec-chHHhhh
Confidence 39999999999999999999999999999975 33333444566889999977 3455555 4678999
Q ss_pred EeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
||-.+|+....+.. ...++.+++-|++-+++++-.++.+..+-++
T Consensus 299 Wd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 299 WDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 99999999998874 4569999999999999999888887776665
No 215
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.2e-15 Score=133.69 Aligned_cols=319 Identities=11% Similarity=0.124 Sum_probs=204.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
.++.-+ .-.+.+|+...-....+...+..........+ ++++|++++.+.. +.+.|++.......+..... .+
T Consensus 4 ~~aVRs--Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~--~S~~G~lfA~~~~--~~v~i~~~~~~~~~lt~~~~-~~ 76 (566)
T KOG2315|consen 4 VYAVRS--SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFA--YSNNGRLFAYSDN--QVVKVFEIATLKVVLCVELK-KT 76 (566)
T ss_pred eEEEEc--cceeEEeccCCccccccccccCCCCCcceeEE--EcCCCcEEEEEcC--CeEEEEEccCCcEEEEeccc-ee
Confidence 344444 34588999765333333323321222333444 8999999988876 69999999888755555555 89
Q ss_pred eEEEECCCCCEEEEe-----cC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 84 KPIAANSHGTYIAGG-----GQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~-----~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.++.|+|-+.+|.+= .. .-.+.+|+++++.....+......-++..|++|..+.+-- ..+.+.+|++.+
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~ 155 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS 155 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCC
Confidence 999999999998762 11 2348899999966655554433333689999887654322 245788888755
Q ss_pred ccchhccc------------ccccceE--------------Eeec----C-C---------cCceeEEEEEEcCceeEEE
Q 014475 154 VFEECESQ------------RASHLYL--------------HSFT----G-H---------TLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 154 ~~~~~~~~------------~~~~~~~--------------~~~~----~-~---------~~~i~~~~~~~~~~~~~l~ 193 (424)
........ ......+ +.+. + | ...-..+.|++.+.+-+++
T Consensus 156 f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvL 235 (566)
T KOG2315|consen 156 FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVL 235 (566)
T ss_pred ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEE
Confidence 21110000 0000000 0000 0 0 0001123444444322222
Q ss_pred EEe-C---------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE--EeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475 194 SAS-E---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--GSRDGSIYIAALNAESPSTSSYGMHI 261 (424)
Q Consensus 194 ~~~-~---------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (424)
+.+ - ..++++.++........+...++|.+++|+|+++-+++ |-+-.++.+||++.. +
T Consensus 236 astdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~ 305 (566)
T KOG2315|consen 236 ASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------P 305 (566)
T ss_pred EEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----------E
Confidence 221 1 23566677664455555556789999999999987765 557789999999873 3
Q ss_pred eeeecccCcCeEEEEecC-CCEEEEeCC---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc------CC
Q 014475 262 IGSLSDHSKAVTCLAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS------FS 331 (424)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~-~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~------~d 331 (424)
+..+ ..++=+++-|+| |++++.+|. -|.|-|||+.+.+++..+..... +-+.|+|||+++++++ -|
T Consensus 306 v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvd 381 (566)
T KOG2315|consen 306 VFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVD 381 (566)
T ss_pred eEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEec
Confidence 4444 457778899999 999998875 47899999999999998876443 6679999999998876 46
Q ss_pred CceeeccCCCCCC
Q 014475 332 NPHTSSRRHGSQL 344 (424)
Q Consensus 332 ~~i~iw~~~~~~~ 344 (424)
+.++||+..+..+
T Consensus 382 Ng~KiwhytG~~l 394 (566)
T KOG2315|consen 382 NGIKIWHYTGSLL 394 (566)
T ss_pred CCeEEEEecCcee
Confidence 7899999987765
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=144.35 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=165.0
Q ss_pred eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE-EeecCCcCceeEEEEEEcCceeEE
Q 014475 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL-HSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
..+.+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-. .+++ ..-.+|...|.++.|-|......+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-----------~KllhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-----------YKLLHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchh-----------cceeeeeecccccceeEEeeeccCCCeEE
Confidence 4467889999999999999999999999999999999842 3333 344689999999999998877999
Q ss_pred EEEeCCCcEEEEecCCC----------ceeeeee-cCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCc-Cc
Q 014475 193 VSASEDRTCKVWSLLKG----------RLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSY-GM 259 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~ 259 (424)
++|..|..|+++|+... +....+. |...|..++..|++ ..+.+++.||+|+.+|++......... ..
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 99999999999999742 1222222 67788899999987 889999999999999999854322211 01
Q ss_pred eeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC--------Cc----------EEEEEe-ccC----C---
Q 014475 260 HIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT--------HN----------IVRMFR-LAK----G--- 311 (424)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~----~--- 311 (424)
..+..+...--...++.++| ..+|+.|+.|-..++||.+. +. ++..+. +|. +
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 11111112224467888999 78999999999999999431 11 222222 222 1
Q ss_pred ----CeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 312 ----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 312 ----~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
.++-+.|+|+|.-|++.-....|+++++...+.+.+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 256788999998888777777899999987765433
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=2e-17 Score=141.38 Aligned_cols=267 Identities=14% Similarity=0.166 Sum_probs=207.9
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCee
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK 84 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~ 84 (424)
|+.|+ ..|.|-.+|..++++..++..- ..|..+. |..+.+++|++-. ..+.|||-..-+...... ..+|.
T Consensus 144 lllgG-rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~--~LHneq~~AVAQK--~y~yvYD~~GtElHClk~-~~~v~ 213 (545)
T KOG1272|consen 144 LLLGG-RKGHLAAFDWVTKKLHFEINVM----ETVRDVT--FLHNEQFFAVAQK--KYVYVYDNNGTELHCLKR-HIRVA 213 (545)
T ss_pred EEecC-Cccceeeeecccceeeeeeehh----hhhhhhh--hhcchHHHHhhhh--ceEEEecCCCcEEeehhh-cCchh
Confidence 55566 6899999999999999888643 3455666 9999999999987 699999977666544433 46889
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccc
Q 014475 85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 164 (424)
.+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|....
T Consensus 214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s----------- 282 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS----------- 282 (545)
T ss_pred hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-----------
Confidence 999999999999999999999999999999999998889999999999888899999999999999844
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
..++..+..|.++|.++++.+.| .+++|++.|..++|||++....+..+..+.+...+++|..| +++.+....+.+
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeee
Confidence 44566678899999999999999 99999999999999999998877777777888888888666 344445557888
Q ss_pred EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
|.=........ ..........++|..+.|.| .+.|-.|...|.-.|.=.-.|
T Consensus 359 w~d~~~~s~~~----~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 359 WKDALKGSGHG----ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred ehhhhcCCCCC----CcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 85332211000 00001111235899999999 887777776665444433333
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.3e-15 Score=124.12 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=187.4
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc----
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG---- 112 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~---- 112 (424)
+..++ |++--..+++++.| ..|++|+-...... .+......|+|++|-|. ++-|++|+..| |.+|.....
T Consensus 101 lr~~a--WhqH~~~fava~nd-dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVA--WHQHIIAFAVATND-DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred eeeEe--echhhhhhhhhccC-cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 44556 88877778888887 99999998764433 33445779999999994 56788888765 999987432
Q ss_pred ce----------eeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475 113 RL----------LKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (424)
Q Consensus 113 ~~----------~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (424)
.. +...++| .+|++++|.+||..+++++. |..|.|||..++. ..++. ....+.++-+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~---------~~pL~--~~glgg~slL 244 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ---------KIPLI--PKGLGGFSLL 244 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC---------ccccc--ccCCCceeeE
Confidence 11 1122344 78999999999999999876 5679999997732 22222 2345678889
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC--CCCCC-Cc
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE--SPSTS-SY 257 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~-~~ 257 (424)
.|+|++ .+|++++-|+..++|+... ....+-....+.|...+|+|.|++|+..+. |.-++|.+.-. ..... ..
T Consensus 245 kwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 245 KWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred EEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 999999 8999999999999996543 333344446679999999999998766543 23344444322 21111 00
Q ss_pred ---Cceeeeeec------c---cCcCeEEEEecC-CCEEEEeCCCC--------cEEEEeCCCCcEEEEEe-cc--CCCe
Q 014475 258 ---GMHIIGSLS------D---HSKAVTCLAYST-GDLLISGSEDG--------MVRVWDPITHNIVRMFR-LA--KGPV 313 (424)
Q Consensus 258 ---~~~~~~~~~------~---~~~~i~~~~~~~-~~~l~t~~~dg--------~i~iwd~~~~~~~~~~~-~~--~~~v 313 (424)
...++..+. + -.+++.+++|.| |.+|++.-..+ .|.+||.+..-.+.-.. +. ...-
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P 401 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP 401 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC
Confidence 111111111 1 246789999999 99999875433 47778877544333221 11 1123
Q ss_pred eEEEEEe---cCceeeeccCCCceeeccCC
Q 014475 314 NNILVVR---RPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 314 ~~l~~s~---~~~~l~~~~~d~~i~iw~~~ 340 (424)
.-++|+| ++.+|..+-..|.+.-+.+.
T Consensus 402 ~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 402 AYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 5566765 56777777777877766543
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=1.3e-15 Score=132.73 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=175.6
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceee----eeccccCCeEEEEE-----ccCCcEEEEeeCCCcEEEEeCCc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVF-----SEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~~~~-----~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
+....++-.|.+|+-.-. ..+++|+.+.+.... ...-......|-.| .|.+--++.|-.-|.+++.|...
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 444455556777766433 368999887542211 11011122334444 34566688888899999999855
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--------------C----------
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--------------G---------- 209 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--------------~---------- 209 (424)
. +... ..-......+..++++.|-+.++ ..++.+-.+|.+.+||... +
T Consensus 205 ~-~~sk------lfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 205 F-EVSK------LFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred h-HHHH------hhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 1 1000 00111112347899999999876 6778888899999997531 1
Q ss_pred ----ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE
Q 014475 210 ----RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL 283 (424)
Q Consensus 210 ----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l 283 (424)
.++.... ..+.|+..+|+|||++||+.+.||.++|||..+. +++..++.--+...|++|+| +++|
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccEE
Confidence 1111111 2357899999999999999999999999999986 55566666778899999999 9999
Q ss_pred EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-------------------------------------------
Q 014475 284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR------------------------------------------- 320 (424)
Q Consensus 284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~------------------------------------------- 320 (424)
++|++|-.|.||.+..++.+..-++|...|..++|.|
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~ 427 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF 427 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence 9999999999999999999999999999999999982
Q ss_pred -----cCceeeeccCCCceeeccCCCCCCCC
Q 014475 321 -----RPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 321 -----~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
..-.+.+.+.|-.+.+||+....+.+
T Consensus 428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 428 NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccceEEEeecccccceEEEEecchhhccc
Confidence 01246778889999999998665544
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=137.72 Aligned_cols=258 Identities=17% Similarity=0.204 Sum_probs=195.0
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
.|.+.|+.+.|+..|..|++|+.|..|.+||..+++....+ .+|...|....|.| +.+.+++++.||.+++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 47899999999999999999999999999999998877666 57988999989988 4567999999999998877431
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----cCc---ceeEEEEC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPS---VIDAIALD 227 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~---~i~~~~~~ 227 (424)
......+.+..|.++|.-++.-|... ..|.+++.|+.+.-+|++...+...+. ... ....++..
T Consensus 220 --------~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 220 --------GYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred --------cceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 11222455678999999999999876 789999999999999999876554443 222 57788999
Q ss_pred CCC-CEEEEEeCCCcEEEEEcCCCCCCCCCc---CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--C
Q 014475 228 PAE-HVFYAGSRDGSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--H 300 (424)
Q Consensus 228 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--~ 300 (424)
|.. ..+++|+.|-.+++||.+.-....... .+.+-.........|++++++. +.-|+++-.|-.|+++.-.. |
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 955 489999999999999998754321110 0111111223456799999996 44445555677799995432 2
Q ss_pred ----------cEEEE-EeccCC--CeeEEEEE-ecCceeeeccCCCceeeccCCCCCC
Q 014475 301 ----------NIVRM-FRLAKG--PVNNILVV-RRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 301 ----------~~~~~-~~~~~~--~v~~l~~s-~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
..++. +++|.. .|..+-|- |...|+++||+=|.|.||+.+++++
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 22333 778865 57777654 8889999999999999999998876
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.7e-15 Score=138.05 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=159.4
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec---CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG---QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.+||.+.........+...+...+|||||+.|+..+ .+..|.+|++.+++.... ....+.+....|+|||+.|
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 589999998776655556677899999999999998754 245799999988754322 2223334568999999988
Q ss_pred EEe-eCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEE--EecCCCce
Q 014475 138 ISG-SEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKV--WSLLKGRL 211 (424)
Q Consensus 138 ~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~i--wd~~~~~~ 211 (424)
+.. +.+| .|.+||+.++. ...+..+...+....|+|++ +.|+..+. ++...+ +|+.+++.
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~------------~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQ------------IRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCC------------EEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe
Confidence 754 4455 48889986521 22333344567788999998 66666554 444444 46666654
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
..............|+|+|++++..+.+ ..|++||+.++.. . .+... .......|+| ++.|+.++
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~---~Lt~~-~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------Q---VLTDT-FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------E---EeCCC-CCCCCceECCCCCEEEEEE
Confidence 3332244456678999999998876543 3588889877631 1 12111 1234567999 88888888
Q ss_pred CCCc---EEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 288 EDGM---VRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 288 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
.++. +.++++ +|+....+..|.+.+...+|+|
T Consensus 393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 7664 677776 5777777888888899999987
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.8e-16 Score=129.83 Aligned_cols=247 Identities=10% Similarity=0.127 Sum_probs=187.9
Q ss_pred CCCeeEEEECCCC--CEEEEecCCCcEEEEEccCcceeeee------ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 80 AEPIKPIAANSHG--TYIAGGGQSGDIYMWEVASGRLLKKW------HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 80 ~~~v~~~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
...+..++|..++ ..+...+.+-.+..+.+........+ ....++|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4567888887654 34444446667777777666554443 3445677777765 346888899999999998
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--CcEEEEecCCCceeeeee----------cCc
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--RTCKVWSLLKGRLLRNIV----------FPS 219 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~----------~~~ 219 (424)
..+... ...+..+..+ .++..+.-++... ..+++|+.. ..+.+||+...+.+..-. .+-
T Consensus 133 k~~d~h-------ss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 133 KSGDLH-------SSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred cCCccc-------cccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 643211 1112222222 3444444444432 677789988 889999999876554433 233
Q ss_pred ceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 220 VIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 220 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
.++.+.|-+. ...|++++.-+.+++||.+.+. +++..+.--+.+++++...| ++++++|..-|.+..||
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence 5678889887 8899999999999999999876 77888887889999999999 99999999999999999
Q ss_pred CCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 297 PITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 297 ~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
++.++.+.. +.+..+.|+++..+|.+++|++++-|..+||+|+.+.++.
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 999998887 8899999999999999999999999999999999987653
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.8e-15 Score=136.52 Aligned_cols=236 Identities=17% Similarity=0.173 Sum_probs=155.9
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.++|.+.........+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 56888887665554445667889999999999999877543 359999998886543 33334556789999999887
Q ss_pred E-EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEec--CCCceee
Q 014475 138 I-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSL--LKGRLLR 213 (424)
Q Consensus 138 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~--~~~~~~~ 213 (424)
+ +.+.+|...+|.++.. .. ....+..+........|+|++ +.++..+ .++...+|.+ .+++...
T Consensus 255 a~~~~~~g~~~Iy~~d~~---------~~-~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 255 AVALSRDGNSQIYTVNAD---------GS-GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred EEEEccCCCceEEEEECC---------CC-CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEE
Confidence 6 5677887777765321 11 123344455555677899998 6665544 4566667655 4444322
Q ss_pred eeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 214 NIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
............|+|+|++++..+.++ .|++||+.++.. . .+..+ .......|+| ++.|+.++.+
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~---~lt~~-~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------T---ALTDT-TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------E---EccCC-CCccCceECCCCCEEEEEEec
Confidence 222333345678999999998777654 599999987641 1 12111 2335678999 8877776644
Q ss_pred C---cEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 290 G---MVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 290 g---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
+ .+.+.++ +++....+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 3 3556666 46667777767788888888874
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.1e-15 Score=121.87 Aligned_cols=269 Identities=16% Similarity=0.227 Sum_probs=173.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---------
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--------- 74 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--------- 74 (424)
.+|++. .|-+|++||-.+ +....++.. ..+.|+|++ |-|.+...++.+.. +.|.+|..+..-..
T Consensus 112 ~fava~-nddvVriy~kss-t~pt~Lks~--sQrnvtcla--wRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~ 184 (445)
T KOG2139|consen 112 AFAVAT-NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLA--WRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMST 184 (445)
T ss_pred hhhhhc-cCcEEEEeccCC-CCCceecch--hhcceeEEE--eccCCcceeeeeec-ceeEEEEcCcccccccccccccc
Confidence 467788 899999999665 555555432 346799999 99987665555555 89999987632211
Q ss_pred -----eeecCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEE
Q 014475 75 -----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148 (424)
Q Consensus 75 -----~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i 148 (424)
.+.....+|++++|++||..+++++. |..|.|||..++..+.......+.++-+.|+||+.+|+.+.-|+..++
T Consensus 185 ~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl 264 (445)
T KOG2139|consen 185 HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL 264 (445)
T ss_pred cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence 11112368999999999999999875 567999999999877666556678999999999999999999999999
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--c-----------eeeee
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--R-----------LLRNI 215 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~-----------~~~~~ 215 (424)
|+.... .. ........+.|...+|+|.|. ..|++.+..-.+.-...... . ++..+
T Consensus 265 w~e~q~----------wt-~erw~lgsgrvqtacWspcGs-fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 265 WQENQS----------WT-KERWILGSGRVQTACWSPCGS-FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred ehhccc----------ce-ecceeccCCceeeeeecCCCC-EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 976331 11 112233445899999999994 45555554443332222111 0 00111
Q ss_pred e----------cCcceeEEEECCCCCEEEEEeCCC--------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475 216 V----------FPSVIDAIALDPAEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (424)
Q Consensus 216 ~----------~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (424)
. ..+.+.+++|+|.|.++++....+ .|.+||.+...... ........+ .....+.|
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve----ls~cg~i~g--e~P~~IsF 406 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE----LSYCGMIGG--EYPAYISF 406 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE----EEecccccC--CCCceEEe
Confidence 0 135789999999999999976554 36677776642110 011111111 12445666
Q ss_pred cC----CCEEEEeCCCCcEEEEeC
Q 014475 278 ST----GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 278 ~~----~~~l~t~~~dg~i~iwd~ 297 (424)
+| +.+|..+=.-|.+.-|++
T Consensus 407 ~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 407 GPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eecccCCcEEEEEeccCceEeeee
Confidence 65 445555545555555543
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.5e-14 Score=117.06 Aligned_cols=227 Identities=19% Similarity=0.238 Sum_probs=156.8
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC------ceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~~~~ 77 (424)
.++.|. |.-.+||+.+.-+...+.+. ...++..+. ..--.++++..|.. -..|.|||-.........
T Consensus 19 cFava~--~~Gfriyn~~P~ke~~~r~~---~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el 91 (346)
T KOG2111|consen 19 CFAVAT--DTGFRIYNCDPFKESASRQF---IDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL 91 (346)
T ss_pred eEEEEe--cCceEEEecCchhhhhhhcc---ccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE
Confidence 456666 45589999875333222222 222232222 22333444433322 157999996666666666
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeeeccc--cCCeEEEEEccCCcEEEE-eeCCCcEEEEeCCc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH--YRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLT 153 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~ 153 (424)
....+|.++.+.++ .|++.- .+.|+||... +.+.+..+... ....-+++-..+...|+. |-.-|.|+|-|+..
T Consensus 92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 77899999999865 455544 4689999987 44555555322 222323332223334443 44568999999965
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCC
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPA 229 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~ 229 (424)
. .......+..|.+.|.|++.+.+| ..++|+|..|+ |||||..+|+.+.++. ....|.+++|+|+
T Consensus 169 ~---------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 169 T---------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred c---------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 2 221345678999999999999999 89999999997 7899999999999987 5678999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 014475 230 EHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
..+|+++++.|+++++.++...
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999998754
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=8e-16 Score=134.05 Aligned_cols=220 Identities=10% Similarity=0.156 Sum_probs=157.6
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceee-----eecCCCCeeEEEE-----CCCCCEEEEecCCCcEEEEEccCccee
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAA-----NSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-----~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
++..|.+|+..-. ..+.+|+........ +........|-+| .|.+--++.|-..|.|.+.|....+..
T Consensus 131 ~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s 208 (636)
T KOG2394|consen 131 QSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS 208 (636)
T ss_pred ccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence 4455666665544 478888887432211 1122333444455 346667888888899999998763322
Q ss_pred eeec----cccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc-----cc------------ccccceEEeecC
Q 014475 116 KKWH----AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE-----SQ------------RASHLYLHSFTG 173 (424)
Q Consensus 116 ~~~~----~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~------------~~~~~~~~~~~~ 173 (424)
+.+. -....++|+.|-| +...++++-.+|.+.+||.+-...... .. .....++..+.-
T Consensus 209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~ 288 (636)
T KOG2394|consen 209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI 288 (636)
T ss_pred HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe
Confidence 2221 1347899999998 455677778899999998743111100 00 011123334444
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
.++.|...+|++++ ++|++.+.||.++|+|..+.+++..++ .-+...|++|+|||+++++|+.|..|.+|.+...
T Consensus 289 ~~g~in~f~FS~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-- 364 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-- 364 (636)
T ss_pred ccccccceeEcCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--
Confidence 55688999999988 999999999999999999988877766 5678999999999999999999999999999986
Q ss_pred CCCCcCceeeeeecccCcCeEEEEec
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYS 278 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (424)
+.+..-++|..+|+.++|.
T Consensus 365 -------RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 -------RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -------eEEEeccccccceeeEeec
Confidence 7788889999999999998
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=8.2e-15 Score=134.81 Aligned_cols=235 Identities=13% Similarity=0.138 Sum_probs=157.8
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC--CceeEEEEECCCCceeeeecCCCCeeEEEECC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQVEVKSLPAEPIKPIAANS 90 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~ 90 (424)
..|.+||...+.. +.+..+ ...+.... |+|||+.++..+. .+..|.+|++.+++........+.+...+|+|
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~---~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRS---PQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC-EEeecC---CCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 3699999875443 334322 24566667 9999999986532 12579999998877554444455567889999
Q ss_pred CCCEEEEe-cCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC-CcEEEE--eCCcccchhcccccc
Q 014475 91 HGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-GCVRIW--SLLTVFEECESQRAS 164 (424)
Q Consensus 91 ~~~~l~~~-~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-g~i~iw--d~~~~~~~~~~~~~~ 164 (424)
||+.|+.. +.+| .|++||+++++... +..+...+....|+|||+.|+..+.+ +...+| |+.++ .
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---------~ 322 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---------A 322 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---------C
Confidence 99988865 3344 59999998876544 33344567889999999988776654 444555 55431 1
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCc
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...+..+........|+|++ +.++..+.+ ..|.+||+.+++.. .+..........|+|+|+.++.++.++.
T Consensus 323 ---~~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 323 ---PQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ---eEEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 12222233345568899998 676665543 35888999887643 3333333456789999999999887764
Q ss_pred ---EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 242 ---IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 242 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
+.+++++.. ....+.+|.+.+...+|+|
T Consensus 397 ~~~l~~~~~~G~----------~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 GSVLNLVSTDGR----------FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ceEEEEEECCCC----------CeEECccCCCCcCCcccCC
Confidence 677777553 2445666778888888886
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1e-14 Score=134.83 Aligned_cols=233 Identities=17% Similarity=0.107 Sum_probs=158.0
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.+||.+.........+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+...+..|+|+|+.+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 57999998876665555667789999999999999987643 469999998876533 33334455678999999877
Q ss_pred E-EeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCc--EEEEecCCCce
Q 014475 138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT--CKVWSLLKGRL 211 (424)
Q Consensus 138 ~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~--v~iwd~~~~~~ 211 (424)
+ +.+.+| .|++||+.++. ...+..+.......+|+|++ +.++.++ .+|. |.++|+.+++.
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~------------~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQ------------LTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred EEEEeCCCCceEEEEECCCCC------------eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence 5 445555 58999986521 22334444455678999998 6666555 4454 66667766654
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
.............+|+|+|++++..+.++ .|.+||+.++.. . .+. +........|+| +++++..+
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~---~Lt-~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------R---TLT-PGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------E---ECC-CCCCCCCceECCCCCEEEEEE
Confidence 33322334455789999999998765443 589999877531 1 222 222344568999 88777665
Q ss_pred C---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 288 E---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 288 ~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
. .+.|.++++. +.....+..+.+.+...+|+|
T Consensus 398 ~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 398 REGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 4 3458888874 555666666667788888876
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=1.4e-14 Score=129.30 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=175.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-----
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL----- 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~----- 78 (424)
++++++ .||.|.++|+.+++.+++++... ....++ +++||++++++....+.+.++|.++.+......
T Consensus 50 ~~yv~~-rdg~vsviD~~~~~~v~~i~~G~----~~~~i~--~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 50 YLYVAN-RDGTVSVIDLATGKVVATIKVGG----NPRGIA--VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEEEEE-TTSEEEEEETTSSSEEEEEE-SS----EEEEEE--E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred EEEEEc-CCCeEEEEECCcccEEEEEecCC----CcceEE--EcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence 355566 78999999999999999997653 345566 999999999998767999999998877654322
Q ss_pred ---CCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEe-eCCCcEEEEeCC
Q 014475 79 ---PAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLL 152 (424)
Q Consensus 79 ---~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~i~iwd~~ 152 (424)
....+.++..+|....++.. -+.+.|.+.|....+.+. .............|+|++++++++ ..+..|-++|..
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 23467888889988855544 445888888887654332 222244567789999999987765 446689999987
Q ss_pred cccchhcccccccceEEeecCCcCceeE-------EEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEE
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITD-------IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIA 225 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~ 225 (424)
+........... ..|..+... ..|...+.+...++.-....+.+||..+.+.++.+...+.-.-+.
T Consensus 203 ~~k~v~~i~~g~-------~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~ 275 (369)
T PF02239_consen 203 TGKLVALIDTGK-------KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK 275 (369)
T ss_dssp TTEEEEEEE-SS-------SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE
T ss_pred cceEEEEeeccc-------cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceee
Confidence 643221111100 112222221 223333222333333334467789999999999999665558888
Q ss_pred ECCCCCEEEEE----eCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeC--CCCcEEEEeC
Q 014475 226 LDPAEHVFYAG----SRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS--EDGMVRVWDP 297 (424)
Q Consensus 226 ~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~ 297 (424)
.+|+++++++. ...+.|.++|.++. +.+..+.. ....+..+.|++ |+.+..+. .++.|.+||.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999998 45579999999996 44444432 223588999999 77665554 3347999999
Q ss_pred CCCcEEEEEe
Q 014475 298 ITHNIVRMFR 307 (424)
Q Consensus 298 ~~~~~~~~~~ 307 (424)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999999987
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3e-14 Score=131.94 Aligned_cols=232 Identities=13% Similarity=0.015 Sum_probs=158.4
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.+||.+.........+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 5899999887776666677889999999999999888753 467999999887653 344456677889999999887
Q ss_pred E-EeeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475 138 I-SGSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL 211 (424)
Q Consensus 138 ~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~ 211 (424)
+ +.+.++. |.+||+.++ ....+..+........|+|++ +.++..+ .+| .|.++|+..++.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~------------~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSG------------TTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred EEEEecCCCceEEEEECCCC------------ceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCe
Confidence 5 5555655 677787542 123344455556778999998 6666555 333 588888876655
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
.........+....|+|+|+.++....+ ..|.+||+..+. ...+. ....+....|+| ++.|+..+
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------~~~lt-~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------ERILT-SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------eEecc-CCCCCCCCeECCCCCEEEEEE
Confidence 4433345566778999999999877643 357888875542 11121 122466788999 88776654
Q ss_pred CC------CcEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 288 ED------GMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 288 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
.+ ..+.++|+..+.. ..+. ..+.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 32 3578888765543 4444 344566677776
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.7e-14 Score=132.94 Aligned_cols=238 Identities=15% Similarity=0.100 Sum_probs=152.3
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s 89 (424)
...|.++|.. |...+.+..+ ...+...+ |+|+|+.++.++..+ ..|.+||+.+++........+.+.+.+|+
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~~---~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALSS---PEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS 248 (427)
T ss_pred ccEEEEECCC-CCCceEeccC---CCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence 4568888864 5544444333 24466666 999999998776432 46999999988765444445667789999
Q ss_pred CCCCEEEE-ecCCCcEEEEEc--cCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhccccccc
Q 014475 90 SHGTYIAG-GGQSGDIYMWEV--ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 90 ~~~~~l~~-~~~dg~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
|||+.|+. .+.+|...||.+ ..+. ...+..+........|+|||+.|+..+. +|...+|.+.... ..
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~-------g~- 319 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG-------GA- 319 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-------Cc-
Confidence 99998874 567777666654 4443 4455555556677899999998876654 4666777653210 11
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG-- 240 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-- 240 (424)
...+..+........|+|++ +.++..+.++ .|.+||+.+++... +..........|+|+++.|+..+.++
T Consensus 320 --~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 320 --AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred --eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence 11111122233456899998 7777666554 59999998876543 33333456789999999988877544
Q ss_pred -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
.+++.+... .....+..+.+.+...+|+|
T Consensus 395 ~~l~~~~~~g----------~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 395 SVLAAVSSDG----------RIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEEEECCC----------CceEEeecCCCCCCCCccCC
Confidence 355555533 22333444556667777776
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.3e-14 Score=134.06 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=154.5
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANS 90 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~ 90 (424)
..|.+||.. +...+.+..+. ..+.... |+|+|+.++..+..+ ..|.+||+.+++........+...+.+|+|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~---~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSA---EPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCC-CCCceEeecCC---Ccccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 469999986 44444454332 3466666 999999999876432 479999998877654444455566889999
Q ss_pred CCCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCc--EEEEeCCcccchhcccccc
Q 014475 91 HGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 91 ~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~ 164 (424)
||+.++. .+.+| .|++||+.+++.. .+..+.......+|+||++.|+..+. +|. |.++|+.++.
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--------- 327 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--------- 327 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------
Confidence 9997764 34444 5999999887643 45455555678899999998887664 444 6666664421
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC--
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-- 239 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 239 (424)
...+..+.......+|+|++ +.++..+.++ .|.+||+.+++.. .+..........|+|+|+.++..+.+
T Consensus 328 ---~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 328 ---AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred ---eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCC
Confidence 11112222334467899998 6776654433 5999999887654 44443345667999999988876653
Q ss_pred -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
+.|++++.... ....+..+.+.+...+|+|
T Consensus 402 ~~~L~~~~~~g~----------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 402 RGVLAAVSTDGR----------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEEEEECCCC----------ceEEcccCCCCCCCCccCC
Confidence 35777777553 2333444455566667765
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.1e-14 Score=120.62 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=164.1
Q ss_pred EEeecCCCCCceEEEeCCCCc----eEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGA----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~ 77 (424)
.|.++- .+|.+.+|..+.+. .+..+..+ .++..+. -.+....+++.|... ..+.+||++..+..+..
T Consensus 117 ~Litc~-~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r--~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 117 TLITCV-SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVR--QTDTDPYIVATGGKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred EEEEEe-cCCcEEEEeccCCccccccceeeecC----Cceeeec--cCCCCCceEecCchhcccceeeeecccceeeeec
Confidence 467777 88999999998543 22333332 4456666 777777777755544 67999999887555443
Q ss_pred c--C--------CCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475 78 L--P--------AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG 144 (424)
Q Consensus 78 ~--~--------~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 144 (424)
. . +-.++.+.|-+. ...||+++.-+.|++||.+.+ +++..+.-...+++++...|+++++++|..-|
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g 269 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG 269 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc
Confidence 2 1 224678889887 889999999999999999866 56777777788999999999999999999999
Q ss_pred cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEE
Q 014475 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI 224 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~ 224 (424)
.+..||++.+ ......+.+-.+.|+++..+|.. .++++++-|..|||+|+.+.+++........++++
T Consensus 270 ~l~~FD~r~~----------kl~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 270 QLAKFDLRGG----------KLLGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred hhheecccCc----------eeeccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 9999999652 22334478889999999999998 89999999999999999998888888788888888
Q ss_pred EECCCC
Q 014475 225 ALDPAE 230 (424)
Q Consensus 225 ~~~~~~ 230 (424)
.+.++-
T Consensus 338 l~~~~~ 343 (412)
T KOG3881|consen 338 LLRDDV 343 (412)
T ss_pred EecCCc
Confidence 886643
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.8e-13 Score=125.50 Aligned_cols=214 Identities=14% Similarity=0.046 Sum_probs=145.6
Q ss_pred CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
..|.++|.. +...+.+..|...+.+..|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------------~~~l~~~~g~~ 248 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------------RELVGNFPGMT 248 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc------------EEEeecCCCcc
Confidence 368899974 4445566678889999999999999887764 4679999996632 12234455567
Q ss_pred eEEEEEEcCceeEE-EEEeCCCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCC
Q 014475 179 TDIVIGYGGVSATI-VSASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESP 252 (424)
Q Consensus 179 ~~~~~~~~~~~~~l-~~~~~d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~ 252 (424)
....|+|++ +.| ++.+.++. |.+||+.+++......+........|+|+|+.++..+. +| .|+++|+..+.
T Consensus 249 ~~~~~SPDG--~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~- 325 (435)
T PRK05137 249 FAPRFSPDG--RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN- 325 (435)
T ss_pred cCcEECCCC--CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence 788999998 554 56666665 77779888776544335556678899999998887764 33 57888876643
Q ss_pred CCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
...+..+...+....|+| ++.|+..+.+ ..|.+||+..+. ...+. ....+....|+|||++|+..
T Consensus 326 ---------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 326 ---------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ---------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEE
Confidence 222222344566788999 8888776543 368889976554 33343 23357788999999998765
Q ss_pred cCCC------ceeeccCCCC
Q 014475 329 SFSN------PHTSSRRHGS 342 (424)
Q Consensus 329 ~~d~------~i~iw~~~~~ 342 (424)
+.++ .+.+.++.+.
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EccCCCCCcceEEEEECCCC
Confidence 5432 4566666544
No 235
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.61 E-value=1.2e-12 Score=119.37 Aligned_cols=303 Identities=15% Similarity=0.103 Sum_probs=187.8
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
.+++++ .+|.|.-+|..+|+.+-+.+........ ...++..+++++.+ |.+..+|.++++..+.....+.+
T Consensus 67 ~v~v~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~-------p~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 67 KVYAAD-ADGTVVALDAETGKRLWRVDLDERLSGG-------VGADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred EEEEEC-CCCeEEEEEccCCcEeeeecCCCCcccc-------eEEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCcee
Confidence 466777 7899999999999988766543321111 22345666676666 99999999999888766554443
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE-----EEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-----CLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
.+.-.. .+..++.++.+|.|+.+|.++|+.+..++....... +.... +..++.+..+|.+..+|.+++....
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 321111 345677778899999999999998777654322111 11121 2467778888999999997754321
Q ss_pred cccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475 159 ESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
........-..... +...+. ...+ .+ ..++.++.+|.+..+|..+++.+........ ... ...+..+++++
T Consensus 215 ~~~~~~~~g~~~~~-~~~~~~~~p~~--~~--~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p--~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTELE-RLVDVDGDPVV--DG--GQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGP--AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCchh-hhhccCCccEE--EC--CEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCc--eEeCCEEEEEC
Confidence 11000000000000 000000 0111 12 5777888899999999999988776653221 111 12567888889
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCc-CeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK-AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
.+|.++.+|..+++.. -....... ........ ++.+++++.+|.|.++|..+++.+.+++.+..++..-
T Consensus 287 ~~G~l~~~d~~tG~~~---------W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s 356 (377)
T TIGR03300 287 ADGVVVALDRRSGSEL---------WKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP 356 (377)
T ss_pred CCCeEEEEECCCCcEE---------EccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence 9999999999887421 11111111 11111111 7789999999999999999999999988766544333
Q ss_pred EEEecCceeeeccCCCceeec
Q 014475 317 LVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 317 ~~s~~~~~l~~~~~d~~i~iw 337 (424)
-...++ .|..++.||.|..+
T Consensus 357 p~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 357 PVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEECC-EEEEEeCCceEEEe
Confidence 333344 47788889988765
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=8e-14 Score=113.13 Aligned_cols=131 Identities=16% Similarity=0.215 Sum_probs=99.5
Q ss_pred cEEEEecCC-Cceeeeee--cCcceeEEEECCCCCEEEEE--eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475 200 TCKVWSLLK-GRLLRNIV--FPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (424)
Q Consensus 200 ~v~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (424)
...+|.++. ......+. ..++|.+++|+|+++.|++. ..++.+.+||++. ..+..+ +...++.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~~~--~~~~~n~ 105 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIFSF--GTQPRNT 105 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeEee--cCCCceE
Confidence 355555532 23344444 44579999999999987654 4667999999973 344454 3467789
Q ss_pred EEecC-CCEEEEeCC---CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC------CCceeeccCCCCCC
Q 014475 275 LAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL 344 (424)
Q Consensus 275 ~~~~~-~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d~~i~iw~~~~~~~ 344 (424)
+.|+| |++|++++. .|.|.+||+++.+.+.... | ..++.++|+|||++|++++. |..++||+..+..+
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99999 999999874 4679999999999888876 3 34789999999999998764 78899999987654
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.5e-13 Score=111.59 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=110.3
Q ss_pred eEEEECCCCCEEEEecC----------CCcEEEEEccC-cceeeeecc-ccCCeEEEEEccCCcEEEEe--eCCCcEEEE
Q 014475 84 KPIAANSHGTYIAGGGQ----------SGDIYMWEVAS-GRLLKKWHA-HYRAVTCLVFSEDGSFLISG--SEDGCVRIW 149 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~--~~dg~i~iw 149 (424)
..+.|+|+|++|++-.. -|...+|.++. +.....+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776433 13355665532 233444433 34579999999999987654 456799999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEE
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIAL 226 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~ 226 (424)
|++ ...+..+ +...++.+.|+|+| +++++++.+ |.|.+||.++.+.+....+.. +..++|
T Consensus 89 d~~------------~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~W 151 (194)
T PF08662_consen 89 DVK------------GKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEW 151 (194)
T ss_pred cCc------------ccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEE
Confidence 994 2233333 35677889999999 888887743 669999999988888877665 689999
Q ss_pred CCCCCEEEEEeC------CCcEEEEEcCCC
Q 014475 227 DPAEHVFYAGSR------DGSIYIAALNAE 250 (424)
Q Consensus 227 ~~~~~~l~~~~~------dg~i~i~d~~~~ 250 (424)
+|+|++++++.. |+.++||+....
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999999999874 678999998753
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=1.5e-12 Score=113.34 Aligned_cols=297 Identities=14% Similarity=0.181 Sum_probs=188.2
Q ss_pred EEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE
Q 014475 16 GCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI 95 (424)
Q Consensus 16 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 95 (424)
..|+..+...-..+.. ..-.+..+. ++|.|.+|++... ..|.+|.-....... ......|.-+.|+|+++||
T Consensus 15 ~f~~~~s~~~~~~~~~---~~~p~~~~~--~SP~G~~l~~~~~--~~V~~~~g~~~~~l~-~~~~~~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFES---ENWPVAYVS--ESPLGTYLFSEHA--AGVECWGGPSKAKLV-RFRHPDVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccc---cCcchhhee--ecCcchheehhhc--cceEEccccchhhee-eeecCCceecccCccccee
Confidence 4566555444443432 223355555 9999999999887 589999987776433 3444678999999999999
Q ss_pred EEecCCC---------------cEEEEEccCcceeeeeccccCC--eE-EEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 96 AGGGQSG---------------DIYMWEVASGRLLKKWHAHYRA--VT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 96 ~~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.+=...+ .+.+||+.+|..+..+.....+ .. -+.|+-++++++-... ..++++++.....
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~- 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIE- 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccc-
Confidence 9865433 4999999999999988776655 55 6888888887765533 3689998622111
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEE-----EeCCCcEEEEecCCCcee--------------------
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-----ASEDRTCKVWSLLKGRLL-------------------- 212 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-----~~~d~~v~iwd~~~~~~~-------------------- 212 (424)
..+.+.+ ....|....++|.+++..|+. .+.++.+++|.+..+..+
T Consensus 165 -------~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~ 235 (561)
T COG5354 165 -------EHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK 235 (561)
T ss_pred -------cCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc
Confidence 0001111 123344444444433233322 223344444444322221
Q ss_pred ---------------------------------eeeecCcceeEEEECCCCCEEEEE--eCCCcEEEEEcCCCCCCCCCc
Q 014475 213 ---------------------------------RNIVFPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 213 ---------------------------------~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~ 257 (424)
......++|...+|.|.++.+++. -.+-.+.++|++.+-
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------ 309 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------ 309 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce------
Confidence 111234567777787776665553 356677777777641
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEE-EEeccCCCeeEEEEEecCceeeecc---
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS--- 329 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~--- 329 (424)
.+......=+.+.|+| +++++.++-| |.+-+||......+. .+.+. ..+-+.|+||++++.+..
T Consensus 310 ------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 310 ------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred ------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCc
Confidence 2222344456678999 9999988765 679999987654444 55543 346678999999987653
Q ss_pred ---CCCceeeccCCCCCCC
Q 014475 330 ---FSNPHTSSRRHGSQLP 345 (424)
Q Consensus 330 ---~d~~i~iw~~~~~~~~ 345 (424)
.|..+.+|++.+.+.+
T Consensus 382 k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccccCcceEEEEecCchhh
Confidence 5778999999988775
No 239
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.59 E-value=2.9e-11 Score=105.56 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=173.3
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecCCC--
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLPAE-- 81 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~~~-- 81 (424)
++|.+.|..+++.+.++.....+. .+ ++||++.+.++.. ++..|.+||..+.+.........
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~------~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV------VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee------ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 899999999999999987665433 22 6799999998888 77999999999988765544322
Q ss_pred ------CeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 82 ------PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 82 ------~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
....++++|||++|++... +..|.+.|+.+++.+.++.... ...-...+++.. + +-+.||......+.+
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~ 176 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGT 176 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecC
Confidence 3348899999999997763 6889999999999988876422 222222322222 2 223455555544433
Q ss_pred ccchhcccccccceEEeecC-----CcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCC-----ceeeeee------
Q 014475 154 VFEECESQRASHLYLHSFTG-----HTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG-----RLLRNIV------ 216 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~------ 216 (424)
..... ......+.. ...+ .+.+ ++ .+++...+ |.|.+.|+... +....+.
T Consensus 177 ~g~~~------~~~~~vf~~~~~~v~~rP----~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 177 KGNPK------IKPTEVFHPEDEYLINHP----AYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred CCceE------EeeeeeecCCccccccCC----ceEcCCC--cEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 11100 000001111 0112 3445 44 56666665 99999996432 2222221
Q ss_pred --cCcceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-E
Q 014475 217 --FPSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-L 282 (424)
Q Consensus 217 --~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 282 (424)
.+....-++++|+++.+++... .+.|.++|..+. +.+..+.. ...+..++++| ++ +
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPL 313 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeE
Confidence 2344556999999999888531 247999999886 44544442 45788999999 77 7
Q ss_pred EEEeC-CCCcEEEEeCCCCcEEEEEe
Q 014475 283 LISGS-EDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 283 l~t~~-~dg~i~iwd~~~~~~~~~~~ 307 (424)
|++.. .++.|.+.|..+++.++++.
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeeec
Confidence 76665 67889999999999999983
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=3.6e-11 Score=107.76 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=181.2
Q ss_pred CceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---CceeEEEEECCCC--ceeee---ecCCCC
Q 014475 13 TGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---SSGSILYWSWSKP--QVEVK---SLPAEP 82 (424)
Q Consensus 13 g~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---~~g~i~vwd~~~~--~~~~~---~~~~~~ 82 (424)
+.|.+|++ ++++... ... .........++ ++|++++|.++.. ++|.|..|++... ++... ......
T Consensus 13 ~gI~~~~~d~~~g~l~~-~~~-~~~~~~Ps~l~--~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTL-VQT-VAEGENPSWLA--VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp TEEEEEEEETTTTEEEE-EEE-EEESSSECCEE--E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred CcEEEEEEcCCCCCceE-eee-ecCCCCCceEE--EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 78999998 5555432 221 11223345556 8999999988866 3589999998764 33221 124566
Q ss_pred eeEEEECCCCCEEEEec-CCCcEEEEEccC-cceeee---ec----------cccCCeEEEEEccCCcEEEEeeC-CCcE
Q 014475 83 IKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRLLKK---WH----------AHYRAVTCLVFSEDGSFLISGSE-DGCV 146 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~l~s~~~-dg~i 146 (424)
...++++|++++|+++. .+|.|.++++.. +..... +. .......++.|+|+++++++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 77899999999999886 478999999976 333222 11 12356789999999998887643 3479
Q ss_pred EEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecC--CCce--eeeee-c--
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLL--KGRL--LRNIV-F-- 217 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~--~~~~--~~~~~-~-- 217 (424)
.+|++...... ......+ .........+.|+|++ +++ ++.-.++.|.++++. ++.. +..+. .
T Consensus 169 ~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg--~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 169 YVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDG--KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCc--CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 99998653211 1111111 2344566889999998 555 455567889999988 4322 22222 1
Q ss_pred ----CcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCC
Q 014475 218 ----PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDG 290 (424)
Q Consensus 218 ----~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg 290 (424)
......+.++|+|++|+++. ..+.|.+|+++..... ...+............++++| +++|+++. .++
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 12577899999999998876 4568999999543211 244444544455689999999 88888776 567
Q ss_pred cEEEEeC--CCCcEEEEEe-ccCCCeeEEEE
Q 014475 291 MVRVWDP--ITHNIVRMFR-LAKGPVNNILV 318 (424)
Q Consensus 291 ~i~iwd~--~~~~~~~~~~-~~~~~v~~l~~ 318 (424)
.|.+|++ .+|.+...-. ..-....|+.|
T Consensus 315 ~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred eEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 8999866 5666554432 22334455554
No 241
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-13 Score=112.20 Aligned_cols=259 Identities=18% Similarity=0.268 Sum_probs=177.1
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----eeeeecccc------------CCeEEEEEccCC--cEEEE
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS 139 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~--~~l~s 139 (424)
..+-|.++.|...|.+||+|..+|.|.++.-+... ....++.|. ..|+.+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999999754322 223344443 468899998854 46777
Q ss_pred eeCCCcEEEEeCCcccchhcc-------cc-----------------cccceEEe-ecCCcCceeEEEEEEcCceeEEEE
Q 014475 140 GSEDGCVRIWSLLTVFEECES-------QR-----------------ASHLYLHS-FTGHTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~-------~~-----------------~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~ 194 (424)
.+.|.+|++|.+......... .. ....+.+. -..|.--|+++.++.+. ..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEee
Confidence 889999999998653221100 00 00001111 14577889999998887 56665
Q ss_pred EeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCC-------Cc
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTS-------SY 257 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~ 257 (424)
+ .|=.|.+|++.-......+. ....|++..|+|. .+.++-.+..|+|++-|++....... +.
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5 47789999987443322221 2346889999994 56777788999999999995432111 00
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC-CCCcEEEEEeccCC---------------CeeEEEEEe
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-ITHNIVRMFRLAKG---------------PVNNILVVR 320 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~-~~~~~~~~~~~~~~---------------~v~~l~~s~ 320 (424)
......-+..--..|..+.|++ |+++++-+. -+|++||+ ...+++.+++.|.. .-..++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1111112223346688899999 899988754 57999999 46778888876653 124578999
Q ss_pred cCceeeeccCCCceeeccCCC
Q 014475 321 RPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 321 ~~~~l~~~~~d~~i~iw~~~~ 341 (424)
++.++++|+.....++++...
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred CcceEecccccceEEEecCCC
Confidence 999999999999999999543
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.9e-12 Score=120.66 Aligned_cols=187 Identities=20% Similarity=0.226 Sum_probs=146.7
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~ 81 (424)
..++... .+..+-+||...+.....+.... ...-..++-.-++++.-++++++.. +.|.+|+....+... ...|.+
T Consensus 100 k~i~l~~-~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 100 KKIALVT-SRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVF-GEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred ceEEEEE-cCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEecccc-ccEEEEeccccCCcceecccCC
Confidence 4566666 77899999998877776654322 1111112222366777788888887 999999987544444 678999
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.|..+.++.||.++++.++|.++++|++++.+... ..-+|...|..++|.|+ .+++++.|.+.++|+.+.
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~------- 247 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG------- 247 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-------
Confidence 99999999999999999999999999999988776 66789999999999988 899999999999997633
Q ss_pred cccccceEEeecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475 161 QRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 208 (424)
..+..+.+|. ..|..++..+.. ...+|++.|+.+++||+..
T Consensus 248 -----~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 -----TQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -----ceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence 2233566664 468888888777 8899999999999999753
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.1e-13 Score=116.89 Aligned_cols=277 Identities=11% Similarity=0.151 Sum_probs=185.7
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
+.+||||. ---.|++||+..-.+. +..|... ..|...- .+.|-..++.-..| .+|.+..........+ -+.
T Consensus 64 qY~lAtG~-YKP~ikvydlanLSLK--FERhlDa-e~V~fei--LsDD~SK~v~L~~D-R~IefHak~G~hy~~R--IP~ 134 (703)
T KOG2321|consen 64 QYLLATGT-YKPQIKVYDLANLSLK--FERHLDA-EVVDFEI--LSDDYSKSVFLQND-RTIEFHAKYGRHYRTR--IPK 134 (703)
T ss_pred cEEEEecc-cCCceEEEEcccceee--eeecccc-cceeEEE--eccchhhheEeecC-ceeeehhhcCeeeeee--cCc
Confidence 36789999 8889999999865443 3333221 2344333 44454444444444 6666554322222111 223
Q ss_pred CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.-..++++. +..++++ +....|+-++++.|..+..+....+.++++..++...+|++|+.+|.|-.||.++.......
T Consensus 135 ~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred CCccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 345566654 3344444 44457999999999999999888899999999998889999999999999999774332222
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCC-CEEEEEe
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYAGS 237 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~ 237 (424)
.................|+++.|..+| -.+++|+.+|.+.|||+++.+++..-.| .-+|..+.|.+.+ .--++..
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 111111001111122349999999887 8999999999999999999988877665 4678899997752 3334445
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
....++|||-.++.+ ..... ....++.+++-| +.+++++-.++.+..|=+..-
T Consensus 292 Dk~~~kiWd~~~Gk~---------~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 292 DKRILKIWDECTGKP---------MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred chHHhhhcccccCCc---------eeecc-ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 567899999999852 22332 334588899989 889999988888877766543
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.6e-12 Score=120.52 Aligned_cols=231 Identities=18% Similarity=0.161 Sum_probs=151.3
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.++|.+.........+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+...+.++.|+|+++.|
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 57888888766555555566789999999999999887643 479999998876543 33355567789999999877
Q ss_pred EE-eeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCce
Q 014475 138 IS-GSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRL 211 (424)
Q Consensus 138 ~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~ 211 (424)
+. .+.++ .|++||+.++. ...+..+........|++++ +.|+..+. ++ .|.++|+.+++.
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~------------~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQ------------LTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred EEEECCCCCccEEEEECCCCC------------EEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 64 44444 58888886521 12233344444566888887 66655543 33 577888877765
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
..............|+|++++++.++.++ .|.+||+.++.. . .+... .......|+| ++.|+..+
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~---~l~~~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------R---VLTDT-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence 43333556677889999999999888775 788888877431 1 11111 1234457899 87777766
Q ss_pred CCC---cEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475 288 EDG---MVRVWDPITHNIVRMFRLAKGPVNNILV 318 (424)
Q Consensus 288 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (424)
.++ .+.+.+. +++....+..+.+.+..+.|
T Consensus 384 ~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 384 TRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred eCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 543 3555553 45555656544555555444
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=6.9e-13 Score=107.58 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=180.0
Q ss_pred CCceEEEeCCCCceEE--EeeCCCCCCCceEEecceee---cCCC-ccccCCCCceeEEEEECCCCceeeee--c-----
Q 014475 12 DTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFL---ASSQ-LREQPSASSGSILYWSWSKPQVEVKS--L----- 78 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~--~----- 78 (424)
-|.+.++++...+... +++.. ....+..+. |. .+|. .++-+... |.|.++.....+..... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~--dts~~~dm~--w~~~~~~g~~~l~~a~a~-G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCT--DTSTEFDML--WRIRETDGDFNLLDAHAR-GQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred ccceEEEeecccccCccceeeee--cccccceee--eeeccCCccceeeecccc-ceEEEEeeccceeeeeecccchhhh
Confidence 3678888887665543 11110 001122222 22 2333 34445555 99999987644322111 1
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
......++.|++.+..++++..+|.+.+-+...... .+.++.|.-+++-..|+. +.+.+.+|+.|+.+..||++-
T Consensus 120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~-- 197 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI-- 197 (339)
T ss_pred hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC--
Confidence 112356888999999999999999999666555544 347899999999999976 567889999999999999973
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeeecCcceeEEEECCCC-CEE
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAE-HVF 233 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l 233 (424)
++...-+..+.|...|.++.-+|..+ .++++|+.|..|++||.+ -++++..-...+.|..+.++|.- ..+
T Consensus 198 -------p~~~i~~n~kvH~~GV~SI~ss~~~~-~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 198 -------PKTFIWHNSKVHTSGVVSIYSSPPKP-TYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred -------CcceeeecceeeecceEEEecCCCCC-ceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHH
Confidence 22222233567899999998887643 899999999999999999 57777777788999999999943 334
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcEE-EEeCCCC
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR-VWDPITH 300 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i~-iwd~~~~ 300 (424)
++++.-+-.++-+........ .......+.|..-...-.|.. ..+|+|++ .|..++ +|-.-++
T Consensus 270 L~~CMh~G~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLEF----QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHhcCceEEEecccccch----heeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 444444457777776654220 013344556777777777765 67788876 466644 6655444
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.56 E-value=1.2e-12 Score=106.30 Aligned_cols=262 Identities=10% Similarity=0.077 Sum_probs=181.0
Q ss_pred eeEEEEECCCCceee----eecCCCCeeEEEECC---CCC-EEEEecCCCcEEEEEccCcceeeeecccc------CCeE
Q 014475 61 GSILYWSWSKPQVEV----KSLPAEPIKPIAANS---HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHY------RAVT 126 (424)
Q Consensus 61 g~i~vwd~~~~~~~~----~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~i~ 126 (424)
|.+.++++...+... .......+..+.|.- +|. .++-+..+|.|.++..........+++-. ....
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 889999987655332 223355667777753 454 56667788999999876554444443211 1345
Q ss_pred EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~ 206 (424)
++.|++.+..++++..+|.+.+-+... .....++.++.|+..++...|+...+ +.+.+|+.|+.+..||+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~---------~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETE---------MVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDI 195 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecce---------eeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEe
Confidence 778888888899999999998555432 22334457889999999999987765 89999999999999999
Q ss_pred CC-Cceeee--eecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---
Q 014475 207 LK-GRLLRN--IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--- 279 (424)
Q Consensus 207 ~~-~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 279 (424)
+. ++.+.. ..|...|.++.-+| .+.++++|+.|-.|++||.++.. +++..-. -.+.|..+.++|
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--------KPLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--------CccccCc-cccceEEEEecchhh
Confidence 93 333333 22778888988887 68899999999999999999754 3332222 338899999999
Q ss_pred CCEEEEeCCCCcEEEEeCCCC--c---EEEEEeccCCCeeEEEEEecCceeeecc-CCCcee-eccCCCC
Q 014475 280 GDLLISGSEDGMVRVWDPITH--N---IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHT-SSRRHGS 342 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~-iw~~~~~ 342 (424)
+..|+++-.+| .+|-+.+.+ + .....+.|.+-+..-.|.....+||+++ .|+.++ +|-.-++
T Consensus 267 ~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 267 HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 44566665555 677776544 2 3345556777677777755556788755 666644 7754433
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=7.3e-11 Score=99.16 Aligned_cols=286 Identities=14% Similarity=0.200 Sum_probs=189.1
Q ss_pred CeEEEeecCCC---CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--ceeEEEEECCC--Cce
Q 014475 1 MELLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSK--PQV 73 (424)
Q Consensus 1 ~e~~lat~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--~g~i~vwd~~~--~~~ 73 (424)
|...+..|++. ++.|.+|++.+..-.......-......+.++ ++|+++.|.++..+ .|.|..|.++. ++.
T Consensus 1 m~~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L 78 (346)
T COG2706 1 MKQTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL 78 (346)
T ss_pred CceEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence 33344455434 67899999984433333333334456677778 99999999888665 58898888875 454
Q ss_pred eeee---cCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccC-cceeee--eccccCC----------eEEEEEccCCcE
Q 014475 74 EVKS---LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLKK--WHAHYRA----------VTCLVFSEDGSF 136 (424)
Q Consensus 74 ~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~-~~~~~~--~~~~~~~----------i~~~~~~~~~~~ 136 (424)
.... ....+...++++++|++++++.. .|.|.++-++. |..... .-.|.+. +....+.|++++
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 4332 23456689999999999998865 47899999865 433221 2224444 888999999999
Q ss_pred EEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCC-cee
Q 014475 137 LISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKG-RLL 212 (424)
Q Consensus 137 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~ 212 (424)
|++... | +|.+|++..+..... ....+ .....-+.|.|+|++ ++....+ -+++|.+|..... ..+
T Consensus 159 l~v~DLG~D-ri~~y~~~dg~L~~~-------~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 159 LVVPDLGTD-RIFLYDLDDGKLTPA-------DPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred EEEeecCCc-eEEEEEcccCccccc-------ccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceE
Confidence 988753 4 799999975332111 11111 334556789999998 5655444 5889999998763 222
Q ss_pred eeee----------cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475 213 RNIV----------FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (424)
Q Consensus 213 ~~~~----------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 280 (424)
..++ .......+.++|+|++|+++.. ...|.+|.+...... ...+.....+....+...+++ +
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC
Confidence 2221 2456788999999999998764 337888888765321 133344444555678889999 9
Q ss_pred CEEEEeCCC-CcEEEEeCC--CCcEEE
Q 014475 281 DLLISGSED-GMVRVWDPI--THNIVR 304 (424)
Q Consensus 281 ~~l~t~~~d-g~i~iwd~~--~~~~~~ 304 (424)
++|+++..+ ..|.+|... +|++-.
T Consensus 303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 303 RFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 999888865 458887654 555433
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=4.3e-13 Score=111.06 Aligned_cols=229 Identities=15% Similarity=0.198 Sum_probs=164.7
Q ss_pred EEEeecCCCCCceEEEeC-CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC----ce-eee
Q 014475 3 LLIASSSVADTGIGCWDL-ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QV-EVK 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~----~~-~~~ 76 (424)
.-+.+.+ .|.++|||-- .+|+.-..+. ..-+.+++++. +.+....|+++-.. |++.-+.+... .. ...
T Consensus 37 ~gv~~~s-~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~--y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~ 110 (404)
T KOG1409|consen 37 EGVISVS-EDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAME--YVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDY 110 (404)
T ss_pred CCeEEcc-ccceeeeEEeccccccCchhh--hhCCCCceEee--eeccceEEEEEEec-ceEEEEEhhhhhhhcchhhhh
Confidence 4577888 9999999963 3444444332 22346678888 99999998888877 99988876532 11 122
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 156 (424)
..|..++..+-|+....++++.+.|..+.---.+.+..+..+.- ....+++.+.-. +...|...|.|.+-.+..
T Consensus 111 ~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~--- 184 (404)
T KOG1409|consen 111 LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQ--- 184 (404)
T ss_pred hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEee---
Confidence 45889999999999999999999997766544455544433211 111122222211 555666677777666643
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeeecCcceeEEEECCCCCEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
.....+.++.+|.+.+.+++|.+.. ..+++|..|..+.+||+.-++-. ....|...+..++..+.-+.+.
T Consensus 185 ------~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~ 256 (404)
T KOG1409|consen 185 ------NGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLI 256 (404)
T ss_pred ------cCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeee
Confidence 4556788899999999999999988 89999999999999998654433 3333788899999888889999
Q ss_pred EEeCCCcEEEEEcCCCC
Q 014475 235 AGSRDGSIYIAALNAES 251 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~ 251 (424)
+++.||.|.+|+++...
T Consensus 257 S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccCCCeEEEEecccee
Confidence 99999999999987653
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=2.9e-13 Score=112.06 Aligned_cols=249 Identities=15% Similarity=0.178 Sum_probs=170.0
Q ss_pred CCceEEecceeecCCCccccCCCCceeEEEEECCCCce---ee---eecC------------CCCeeEEEECCCC--CEE
Q 014475 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EV---KSLP------------AEPIKPIAANSHG--TYI 95 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~---~~~~------------~~~v~~~~~s~~~--~~l 95 (424)
..-+.++. |...|.+|++|..+ |.|.++.-+.... .. ...| .+.|+.+.|.+++ ..+
T Consensus 25 adiis~ve--f~~~Ge~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVE--FDHYGERLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEE--eecccceEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 35577788 99999999999998 9999997653221 11 1111 3579999999864 456
Q ss_pred EEecCCCcEEEEEccCcceee-----------------------------------ee-ccccCCeEEEEEccCCcEEEE
Q 014475 96 AGGGQSGDIYMWEVASGRLLK-----------------------------------KW-HAHYRAVTCLVFSEDGSFLIS 139 (424)
Q Consensus 96 ~~~~~dg~v~iwd~~~~~~~~-----------------------------------~~-~~~~~~i~~~~~~~~~~~l~s 139 (424)
+..+.|.+|++|.+....... .+ ..|.-.|+++.++.|...+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 677889999999885431110 01 357788999999999998888
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee----e
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----I 215 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~ 215 (424)
+. |=+|-+|+++-..+.......++ ..+..-..-|++..|+|... +.++-++..|+|++.|++...+.-. +
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP---~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKP---ANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccc---cCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 74 66899999965322111111110 01112234678888998766 7888888999999999985432111 1
Q ss_pred e-------------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------------c
Q 014475 216 V-------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------------K 270 (424)
Q Consensus 216 ~-------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------------~ 270 (424)
. .-..|..+.|+++|+++++-.. -+|.+||++... +++.+.+-|. .
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--------~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--------KPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--------CcceEEeehHhHHHHHHHHhhcc
Confidence 1 1146889999999999987543 479999997765 4444444442 2
Q ss_pred Ce---EEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 271 AV---TCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 271 ~i---~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
.| ..++|+. +.+++||+....+++++...|.
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 22 3467877 7899999999999999966543
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=3.8e-12 Score=118.21 Aligned_cols=234 Identities=18% Similarity=0.127 Sum_probs=150.5
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.++|.+.........+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 36888888877665555677789999999999999876543 369999998886543 22233445578999999987
Q ss_pred E-EeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475 138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL 211 (424)
Q Consensus 138 ~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~ 211 (424)
+ +...+| .|.+||+.++. ...+..+........|+|++ +.++..+ .++ .|.++|+.+++.
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~------------~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQ------------LSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EEEEccCCCceEEEEECCCCC------------eEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 7 444455 57888886521 12233444455667899988 5555444 344 577778877764
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeCC-C--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD-G--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
..............|+|+++.++....+ + .|.++|+.++.. ..+.. ........|+| ++.++..+
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~lt~----~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RILTD----TSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEccC----CCCCCCceECCCCCEEEEEE
Confidence 3332223334457899999998877653 3 578888877531 11111 11122457999 88777665
Q ss_pred CC---CcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 288 ED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 288 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
.+ ..|.++++. +.....+..+.+.+...+|+|-
T Consensus 393 ~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 393 RQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 43 346777764 4445556555667777777763
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=3.8e-13 Score=126.53 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=154.8
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC----CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 156 (424)
+.+....+..+...++.++.+..+.+||...+.....+..... ...-+.++++.-++++|+--+.|.+|+...
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--- 164 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--- 164 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence 3444456666778888888899999999988877666653322 122233466777899999999999999852
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--eeecCcceeEEEECCCCCEEE
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~ 234 (424)
...+ ..+.+|++.|.++.++.++ .++++.+.|.++++|++.+++... .+.|...+..+++.|+ .++
T Consensus 165 -------dn~p-~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 165 -------DNKP-IRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred -------cCCc-ceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 1111 1678999999999999999 999999999999999999988765 4459999999999998 899
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
+++.|-+.++|+.+.. .+..+..|. ..|..++..+ ...++|++.||.+++||+..
T Consensus 233 t~gedctcrvW~~~~~----------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGT----------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccc----------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999977764 344666665 4688999988 78899999999999999764
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.5e-12 Score=117.27 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=148.0
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
..|.++|.+.............+....|+|||+.|+..+.+ ..|++||+.+++... +....+......|+|||+.|
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 47888888776655555667789999999999999876432 358999998876432 22222334578999999987
Q ss_pred EE-eeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCce
Q 014475 138 IS-GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL 211 (424)
Q Consensus 138 ~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~~ 211 (424)
+. .+.+|. |.++|+.++. ...+..+........|+|++ +.++..+ .++ .|.++|+.+++.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~------------~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKA------------LTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCC------------eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 65 556665 7777875421 22333444455678899998 5555444 344 466667777764
Q ss_pred eeeeecCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 212 LRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
.............+|+|+|++++..+. ++ .|.++|+.++.. . .+... .......|+| ++.|+..+
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~---~lt~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------Q---VLTST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence 433222333445789999999887654 34 455667766531 1 11111 1112347899 77766554
Q ss_pred -CCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 288 -EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 288 -~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
.+| .+.+++. +|+....+..+.+.+...+|+|
T Consensus 412 ~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 412 TYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 334 3777786 5777777776667778888887
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=4.1e-12 Score=117.82 Aligned_cols=216 Identities=14% Similarity=0.075 Sum_probs=143.1
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEEC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s 89 (424)
...|.++|...+ ..+.+..+. ..+.... |+|+|+.++.+...+ ..|.+||+.+++......+...+.+++|+
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSR---EPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFS 242 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCC---Cceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence 346888887643 344443322 3456666 999999998775432 57999999887665555556677789999
Q ss_pred CCCCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhccccc
Q 014475 90 SHGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 90 ~~~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~ 163 (424)
|||+.|+. .+.++ .|++||+.++... .+..+........|+|+++.|+..+. ++ .|.++|+.++
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--------- 312 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--------- 312 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------
Confidence 99987764 34443 5889998877543 33344455567799999998876654 33 5777777542
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
. ...+..+........|+|++ +.++.++.++ .|.+||+.++.. ..+..........|+|+++.|+..+.++
T Consensus 313 ~---~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 313 E---VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred C---EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence 1 12233344556678899988 7777777665 788999887553 3333233345668999999888877654
Q ss_pred ---cEEEEEcCC
Q 014475 241 ---SIYIAALNA 249 (424)
Q Consensus 241 ---~i~i~d~~~ 249 (424)
.+++.+...
T Consensus 387 ~~~~l~~~~~~g 398 (417)
T TIGR02800 387 GRGVLGLVSTDG 398 (417)
T ss_pred CcEEEEEEECCC
Confidence 345555433
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=135.48 Aligned_cols=190 Identities=19% Similarity=0.296 Sum_probs=157.3
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
++..|.++. -+|...+.++++.| |.|++|.+..++.... ......|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2207 ~v~~v~r~~--sHp~~~~Yltgs~d-gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPYYLTGSQD-GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeec--CCCCCceEEecCCC-ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 456678877 88999999999998 9999999987775533 3345889999999999999999999999999975 6
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
+.....+.|....+.+.|-. ..+++++. ++.+.+||..-. ....++. ..|.+.++++++.|..
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~--------~~~s~v~--~~H~~gaT~l~~~P~~-- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP--------PMNSLVH--TCHDGGATVLAYAPKH-- 2348 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC--------cccceee--eecCCCceEEEEcCcc--
Confidence 66777889999999999984 56777654 688999997431 2222333 7899999999999998
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
..|++|+.+|.|++||++..++.+.++. ++ ...++++|+..|.++||++....
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc
Confidence 8999999999999999998888777653 44 67789999999999999998863
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.8e-11 Score=112.45 Aligned_cols=241 Identities=13% Similarity=0.031 Sum_probs=145.0
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCcccc--CCCC--ceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQ--PSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~~--~g~i~vwd~~~~~~~~~~~~~~~v~~~~~ 88 (424)
+.|.+.|...+.. +.+.... .....-. |+|||+.++. .+.. ...|.+.++.+++........+.....+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE
Confidence 4677788764443 3343322 2233334 9999986332 2222 14688888888776555555566677899
Q ss_pred CCCCCEEEEecC-CC----cEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhc
Q 014475 89 NSHGTYIAGGGQ-SG----DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 89 s~~~~~l~~~~~-dg----~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 159 (424)
||||+.|+..+. +| .+.+|++..+ +.......+.......+|+|||+.|+..+ .+|...+|.+.-.
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----- 313 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----- 313 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc-----
Confidence 999998886542 22 2444676653 32333333333456789999999877665 4665555543210
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (424)
........+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..........+....|+|+|+.|+..
T Consensus 314 ---~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 314 ---PEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ---ccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence 0011123334444566788999998 666655433 36899999888765443344567789999999988754
Q ss_pred eC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 237 SR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 237 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
.. ...|+++|+..+. ...+....+.+...+|+|
T Consensus 389 ~~~~g~~~L~~vdl~~g~----------~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 389 AGNSNESELYLISLITKK----------TRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ECCCCCceEEEEECCCCC----------EEEeecCCCcccCceecC
Confidence 43 3468888887753 122222334456667776
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1e-11 Score=115.30 Aligned_cols=234 Identities=16% Similarity=0.134 Sum_probs=147.0
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~ 91 (424)
.|.++|...+. .+.+..+ ...+.... |+|+|+.|+..+.++ ..|.+|++.+++........+.+...+|+||
T Consensus 180 ~l~~~d~~g~~-~~~l~~~---~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQS---REPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCC-ceEEecC---CCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence 48888877544 3444333 23466666 999999998765442 4689999988776544444455667999999
Q ss_pred CCEEEE-ecCCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhccccccc
Q 014475 92 GTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 92 ~~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 165 (424)
|+.|+. ...+| .|++||+.+++.. .+..+........|+||++.++..+. +| .|+++|+.++. .
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---------~ 323 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---------A 323 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence 998874 44444 5888899887644 34445555677899999998776554 33 47777775421 1
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC-C-
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G- 240 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g- 240 (424)
..+ ...+ .......|+|++ +.++..+. ++ .|.++|+.+++. ..+..........|+|+|+.++..+.+ +
T Consensus 324 ~~l-t~~~--~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~ 397 (430)
T PRK00178 324 ERV-TFVG--NYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGR 397 (430)
T ss_pred EEe-ecCC--CCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCc
Confidence 111 1111 223346788988 66665554 33 478899988764 333333233456899999998876644 3
Q ss_pred -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
.+++++++... ...+..+.+.+...+|+|
T Consensus 398 ~~l~~~~~~g~~----------~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGRV----------RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCCc----------eEECcCCCCCcCCCccCC
Confidence 46667765432 223333445566666765
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.7e-12 Score=112.37 Aligned_cols=189 Identities=19% Similarity=0.270 Sum_probs=147.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEec----ceeec--------------CCCccccCCCCceeEE
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG----QRFLA--------------SSQLREQPSASSGSIL 64 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~--------------~~~~l~~~~~~~g~i~ 64 (424)
.++|... .||.+|+||..+++....+.....-...-.+.. ...+| +...++-+... |.|.
T Consensus 6 ~~~A~~~-~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~-g~v~ 83 (541)
T KOG4547|consen 6 DYFALST-GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ-GSVL 83 (541)
T ss_pred heEeecC-CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC-ccEE
Confidence 4788888 999999999999999888764332222222222 01111 23334444444 9999
Q ss_pred EEECCCCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee
Q 014475 65 YWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141 (424)
Q Consensus 65 vwd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 141 (424)
+|+...+++..+. .|.++|+++.++.+-..|.+++.|+.+..|+..+...++..++....+.+++.+||++.+++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 9999999987664 4889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc-----CceeEEE-EEeCCCcEEEEecCC
Q 014475 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG-----GVSATIV-SASEDRTCKVWSLLK 208 (424)
Q Consensus 142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~-~~~~d~~v~iwd~~~ 208 (424)
. +|++||+++ ...+..+.+|.++|+++.|... | .+++ +...+..+.+|-++.
T Consensus 164 ~--~ik~~~~~~-----------kevv~~ftgh~s~v~t~~f~~~~~g~~G--~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 R--QIKVLDIET-----------KEVVITFTGHGSPVRTLSFTTLIDGIIG--KYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--eEEEEEccC-----------ceEEEEecCCCcceEEEEEEEecccccc--ceeeeccccccceeEEEEEc
Confidence 5 799999955 5578899999999999999876 3 4444 444556677887654
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=1.5e-10 Score=103.71 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=172.3
Q ss_pred eeEEEEEC--CCCceeeee--cCCCCeeEEEECCCCCEEEEecC----CCcEEEEEccCc--c--eeeeeccccCCeEEE
Q 014475 61 GSILYWSW--SKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASG--R--LLKKWHAHYRAVTCL 128 (424)
Q Consensus 61 g~i~vwd~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~----dg~v~iwd~~~~--~--~~~~~~~~~~~i~~~ 128 (424)
+.|.+|++ +++++.... ........++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 78888888 344443222 24567788999999999988866 568999998764 2 333333344566789
Q ss_pred EEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEee--------cCCcCceeEEEEEEcCceeEEEEEe-CC
Q 014475 129 VFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSF--------TGHTLRITDIVIGYGGVSATIVSAS-ED 198 (424)
Q Consensus 129 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~~~~-~d 198 (424)
+++|++++|+++. .+|.|.++++.......... ..... ........++.++|++ +++++.. ..
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~-----~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~ 165 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV-----QTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGA 165 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE-----EEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTT
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceee-----eecccCCCCCcccccccccceeEEECCCC--CEEEEEecCC
Confidence 9999999998886 48899999997621110000 00000 1123456778999998 6665544 45
Q ss_pred CcEEEEecCCCc--eee--e--eecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc----
Q 014475 199 RTCKVWSLLKGR--LLR--N--IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD---- 267 (424)
Q Consensus 199 ~~v~iwd~~~~~--~~~--~--~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---- 267 (424)
..|.+|++.... ... . +......+.+.|+|+++++++.. .++.|.++++...... ...+.....
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-----~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-----LTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----eeEEEEeeecccc
Confidence 579999997654 322 2 23557789999999999887765 5678999999832211 122222211
Q ss_pred --cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCC--CCc--EEEEEeccCCCeeEEEEEecCceeeecc-CCCceeecc
Q 014475 268 --HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSR 338 (424)
Q Consensus 268 --~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~ 338 (424)
.......++++| +++|+++. ..+.|.+|++. +++ .+..+......-+.++++|+|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 122578899999 88766654 57789999983 333 3444444344578999999999998765 667899997
Q ss_pred CC
Q 014475 339 RH 340 (424)
Q Consensus 339 ~~ 340 (424)
+.
T Consensus 321 ~d 322 (345)
T PF10282_consen 321 ID 322 (345)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=2.1e-12 Score=107.10 Aligned_cols=250 Identities=17% Similarity=0.261 Sum_probs=191.7
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeee-ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
.++.+.++....-|-..-+++.+.|.+++||--+ .++.-..+ .....+++++.+.++...|++|-..|++.-+.+...
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 3456677877777877779999999999999643 33332222 234578999999999999999999999999887543
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
. ++....+....|...+..+.|+... .++++.+.|..+.---.+.+..+.........+++.+.-. +..
T Consensus 101 f-------nkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 101 F-------NKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF 169 (404)
T ss_pred h-------hhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence 2 3344556678899999999998877 8999999998876555555555544443333333333222 666
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-EEEEEeccCCC
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGP 312 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 312 (424)
+|...|.+.+-.+.... ..++..+.+|.+.+.+++|.+ ...|.+|..|..+.+||+.-++ ....+.+|.+.
T Consensus 170 vGd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred ecccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 77778888777765544 367889999999999999999 8999999999999999997544 34567789999
Q ss_pred eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
|..+..-+.-+.|.+++.||.|.+|+.+....
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 99999999999999999999999999985543
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.50 E-value=1.9e-10 Score=114.05 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=191.7
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEE----ECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYW----SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vw----d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~ 110 (424)
....|..+. |.++...++.+..+ |.|.+. +...........-...|.+++||||+..|+..+.++++.+-.-.
T Consensus 74 ~~~~ivs~~--yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQ--YLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEE--eccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 446678888 99999988888887 999999 76777777777778999999999999999999999888775321
Q ss_pred ---------------C--------cceeeeecc------------------------ccCCeEEEEEccCCcEEEEeeC-
Q 014475 111 ---------------S--------GRLLKKWHA------------------------HYRAVTCLVFSEDGSFLISGSE- 142 (424)
Q Consensus 111 ---------------~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~s~~~- 142 (424)
. |+....|+| +...-..++|-.||+++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 011111110 2234567889999999998764
Q ss_pred --C---CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCceeee
Q 014475 143 --D---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 143 --d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~ 214 (424)
. ..++||+-+. ....+...-.+--.+++|.|.| +++++.-. ...|.+|. ++|-....
T Consensus 231 ~~~~~~R~iRVy~ReG------------~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhge 295 (928)
T PF04762_consen 231 PETGSRRVIRVYSREG------------ELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGE 295 (928)
T ss_pred cCCCceeEEEEECCCc------------eEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeee
Confidence 2 4789998642 1111112222233467899998 78887765 34566776 45655555
Q ss_pred eec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC--CCEEEEe
Q 014475 215 IVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLISG 286 (424)
Q Consensus 215 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~t~ 286 (424)
+.. ...+..+.|++++..|++...|. |.+|...+-. |-..+.+.- ....+..+.|+| ...|...
T Consensus 296 F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 552 46799999999999999977655 9999988753 333333332 223455589999 5566666
Q ss_pred CCCCcEEEEeC----CCC--------cEEEEEe-----------------------ccCCCeeEEEEEecCceeeeccCC
Q 014475 287 SEDGMVRVWDP----ITH--------NIVRMFR-----------------------LAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 287 ~~dg~i~iwd~----~~~--------~~~~~~~-----------------------~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
..+|.+..++. ..+ ..+..+. .-..+|.+++|++++..+++-..|
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d 447 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSD 447 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECC
Confidence 66666655442 211 0111111 234689999999999889999999
Q ss_pred CceeeccCCCC
Q 014475 332 NPHTSSRRHGS 342 (424)
Q Consensus 332 ~~i~iw~~~~~ 342 (424)
|.+.+|.....
T Consensus 448 ~~l~~~~~~~~ 458 (928)
T PF04762_consen 448 GSLSIYEWDLK 458 (928)
T ss_pred CCEEEEEecCC
Confidence 99999986544
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=7.3e-12 Score=114.46 Aligned_cols=326 Identities=13% Similarity=0.045 Sum_probs=209.6
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc-cccCCCCceeEEEEECCCCceeeeecC-
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEVKSLP- 79 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~~~~~~- 79 (424)
..+||+++ -.|.|.|||...+..+..+..+..++..+..+- +-++.+. |++-... .++.+|+.++++..++..-
T Consensus 79 ~lliAsaD-~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~--~rd~Srd~LlaIh~s-s~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 79 QLLIASAD-ISGRIILVDFVLASVINWLSHSNDSVQDLCWVP--ARDDSRDVLLAIHGS-STLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ceeEEecc-ccCcEEEEEehhhhhhhhhcCCCcchhheeeee--ccCcchheeEEecCC-cEEEEEEccCCceeeccccC
Confidence 36899999 999999999999998888887776666666555 5556633 3333443 8999999999999888664
Q ss_pred CCCeeEEEECC-CCCEEEEecCCCcEEEEEccC-------cceeeeeccccC----------------C---------eE
Q 014475 80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-------GRLLKKWHAHYR----------------A---------VT 126 (424)
Q Consensus 80 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~----------------~---------i~ 126 (424)
.....|+.+.| |.+.+..-+..|.|.+-+.-. ++..+.-..|.. . .-
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 45566799999 677777667777777766521 122221112211 0 12
Q ss_pred EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~ 206 (424)
.++|+|.-+.++-......+.++|++- ..++....-..+.+.-+.+-|++....|++...||.+.+|--
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~-----------~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEY-----------ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchh-----------hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 345677555555555667899999943 334444444555666778888888789999999999999975
Q ss_pred CCC----------------ceeeeee--cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCC----------c
Q 014475 207 LKG----------------RLLRNIV--FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSS----------Y 257 (424)
Q Consensus 207 ~~~----------------~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~ 257 (424)
+.. ++...+. ....+......|. ...++.--.+|...+|.+.++...... +
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf 383 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF 383 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence 531 1111111 1111222233443 444555556788888888754331100 0
Q ss_pred ------------CceeeeeecccCcCeEEEEecC-C------------------CEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475 258 ------------GMHIIGSLSDHSKAVTCLAYST-G------------------DLLISGSEDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 258 ------------~~~~~~~~~~~~~~i~~~~~~~-~------------------~~l~t~~~dg~i~iwd~~~~~~~~~~ 306 (424)
....+....+|....++....| . .+++.|...|+|.++|+.++..-+.+
T Consensus 384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f 463 (1062)
T KOG1912|consen 384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF 463 (1062)
T ss_pred cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh
Confidence 0011112224555555554443 1 37888999999999999999999999
Q ss_pred eccCCCeeEEEEEecCceee---------eccCCCceeeccCCCC
Q 014475 307 RLAKGPVNNILVVRRPLYLN---------LGSFSNPHTSSRRHGS 342 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~---------~~~~d~~i~iw~~~~~ 342 (424)
..|...|.++.|.-..+++- +++.-+.+.+=+++++
T Consensus 464 svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG 508 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG 508 (1062)
T ss_pred cccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence 99999999999987765542 2333344667777766
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.2e-11 Score=112.74 Aligned_cols=234 Identities=15% Similarity=0.111 Sum_probs=141.4
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~ 91 (424)
.|.++|..... .+.+... ...+.... |+|||+.++..+.++ ..|.+||+.+++........+.....+|+||
T Consensus 199 ~l~i~d~dG~~-~~~l~~~---~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRS---PEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCC-ceEeecC---CCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 57777865433 3333322 23455555 999999998775432 3688899887765433333444567899999
Q ss_pred CCEEEE-ecCCCc--EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCc--EEEEeCCcccchhccccccc
Q 014475 92 GTYIAG-GGQSGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 92 ~~~l~~-~~~dg~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~ 165 (424)
|+.|+. ...+|. |+++|+.+++.. .+..+........|+||++.++..+. ++. |.++|+.++. .
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---------~ 342 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---------V 342 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence 998875 455554 888888777643 44445556678899999998876553 344 5566664421 1
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC-C-
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G- 240 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g- 240 (424)
..+ +..+ .......|+|++ +.++..+. ++ .|.++|+.+++.. .+..........|+|+|+.++..+.+ +
T Consensus 343 ~~L-t~~g--~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 343 SRL-TFEG--EQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred EEE-ecCC--CCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCc
Confidence 111 1122 223346899998 56555443 44 3555787777643 23222222345799999988776543 3
Q ss_pred -cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
.+++++.+.. ....+..+.+.+...+|+|
T Consensus 417 ~~l~~~~~~G~----------~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 417 QVLAAVSIDGR----------FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eEEEEEECCCC----------ceEECcCCCCCcCCCccCC
Confidence 3667776442 2333444555566677776
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.5e-11 Score=108.30 Aligned_cols=240 Identities=13% Similarity=0.012 Sum_probs=147.2
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEE---EecCC--CcEEEEEccCcceeeeeccccCCeEEEEEccCCc
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA---GGGQS--GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 135 (424)
+.|.+.|.+................-+|||||+.++ +...+ ..|.+.++.+++.... ....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence 478888887776554444566677889999997532 33333 3588889887754332 22344455689999999
Q ss_pred EEEEeeC-CC----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEe--cC
Q 014475 136 FLISGSE-DG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWS--LL 207 (424)
Q Consensus 136 ~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd--~~ 207 (424)
.|+..+. +| .+..|++..+. ..........+.......+|+|++ +.|+..+ .+|...+|. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~--------~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGA--------IGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCC--------CCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECc
Confidence 8886553 23 34446664321 011111122222334567899998 6666554 566555554 43
Q ss_pred C-Cceeeeee-cCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475 208 K-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (424)
Q Consensus 208 ~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 281 (424)
. +.....+. ....+....|+|+|+.|+..+.+ ..|++||+.++. ...+......+....|+| ++
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----------~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----------DYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----------eEEccCCCCCccceEECCCCC
Confidence 2 22233333 34566788999999988876543 368999998764 122222234567789999 77
Q ss_pred EEEEe-CC--CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC
Q 014475 282 LLISG-SE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP 322 (424)
Q Consensus 282 ~l~t~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (424)
.|+.. .. ...|.++|+..++..... ...+.+...+|+|-.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 77643 32 356889998877654443 345667778888753
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=3.9e-10 Score=98.60 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=162.0
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC----------CCcEEEEEccCcceeeeeccc-------cC
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAH-------YR 123 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~-------~~ 123 (424)
+.|.+.|.++.+..-...-...-..+ +|||++.|+++.. +..|.+||..+.+.+..+... ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 78999999988876444433333445 9999998887755 678999999999999887642 22
Q ss_pred CeEEEEEccCCcEEEEee-C-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 124 AVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
....++++|||+++++.. . +..|.+.|+.+. +.+..+.-.. ...-... .+ .....-+.||..
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-----------kvv~ei~vp~-~~~vy~t-~e---~~~~~~~~Dg~~ 169 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-----------AFVRMMDVPD-CYHIFPT-AN---DTFFMHCRDGSL 169 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCC-----------cEEEEEeCCC-CcEEEEe-cC---CccEEEeecCce
Confidence 344789999999988765 3 688999999663 2233332211 1000111 11 111122334443
Q ss_pred EEEecCC-Ccee-eeee--cC--cce-eEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccC
Q 014475 202 KVWSLLK-GRLL-RNIV--FP--SVI-DAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHS 269 (424)
Q Consensus 202 ~iwd~~~-~~~~-~~~~--~~--~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~ 269 (424)
....+.+ ++.. .... +. .++ ..-.+.+ +++++++... |.|++.|+......... .+..+..- .-..
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-AIEAFTEAEKADGWRP 247 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-eeeeccccccccccCC
Confidence 3322221 1111 1100 11 000 0003455 8888887776 99999997654322110 01111100 0123
Q ss_pred cCeEEEEecC-CCEEEEeC----------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeeecc-CCCceee
Q 014475 270 KAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGS-FSNPHTS 336 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~-~d~~i~i 336 (424)
+.+.-+++++ ++.++... ..+.|.++|..+++.+..+.. ...+..++++||++ .|.+.. .++.|.+
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 4445599998 66666532 225799999999999999884 46889999999999 776555 6788999
Q ss_pred ccCCCCCCCC
Q 014475 337 SRRHGSQLPP 346 (424)
Q Consensus 337 w~~~~~~~~~ 346 (424)
.|..+.+...
T Consensus 327 iD~~t~k~i~ 336 (352)
T TIGR02658 327 FDAETGKELS 336 (352)
T ss_pred EECcCCeEEe
Confidence 9998776543
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.4e-11 Score=107.02 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=196.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----------ceeEEEEECCCCc
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----------SGSILYWSWSKPQ 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----------~g~i~vwd~~~~~ 72 (424)
.||+|-. ..| |.+|-=++-..++.+. | ..|..+. |||..++|++-+.. ...+.|||+.++.
T Consensus 223 TYL~t~H-k~G-I~lWGG~~f~r~~RF~-H----p~Vq~id--fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 223 TYLVTFH-KQG-IALWGGESFDRIQRFY-H----PGVQFID--FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL 293 (698)
T ss_pred eEEEEEe-ccc-eeeecCccHHHHHhcc-C----CCceeee--cCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence 4666666 443 7788766555555542 2 4588888 99999999987632 2679999999987
Q ss_pred eeeeecC---CC-CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC-----
Q 014475 73 VEVKSLP---AE-PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED----- 143 (424)
Q Consensus 73 ~~~~~~~---~~-~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d----- 143 (424)
....... .. .-.-..||.|++++|--..+ .|.||+..+-.++..-.-.-..|....|+|.++.||--...
T Consensus 294 lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~p 372 (698)
T KOG2314|consen 294 LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIP 372 (698)
T ss_pred hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCc
Confidence 6533221 12 22356799999999987764 69999977644433223344678899999987776643221
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE----------eCCCcEEEEecCCCc-ee
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA----------SEDRTCKVWSLLKGR-LL 212 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~----------~~d~~v~iwd~~~~~-~~ 212 (424)
.++.+-.+. ....+++..-++-.=..+.|-.+| .+|+.- +.-..+.|+.++... ++
T Consensus 373 arvtL~evP-----------s~~~iRt~nlfnVsDckLhWQk~g--dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 373 ARVTLMEVP-----------SKREIRTKNLFNVSDCKLHWQKSG--DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred ceEEEEecC-----------ccceeeeccceeeeccEEEeccCC--cEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 223444442 222233222222222223343444 565532 122245666666544 34
Q ss_pred eeeecCcceeEEEECCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-
Q 014475 213 RNIVFPSVIDAIALDPAEHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS- 287 (424)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~- 287 (424)
........+...+|-|.|..+++-+. ..++.+|.+.+... .+..+..+.. ...+.+.|+| |++++.+.
T Consensus 440 e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 440 EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCCcEEEEEEe
Confidence 45557889999999999998877553 35788898875321 1233444432 5567899999 99888764
Q ss_pred --CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC------CCceeeccCCCCCC
Q 014475 288 --EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL 344 (424)
Q Consensus 288 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d~~i~iw~~~~~~~ 344 (424)
..|.+.++|+.-..+..+-.......+.+.|.|.|+|+++++. |.--++|+..+..+
T Consensus 513 ~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 513 VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 5789999998853333322222235688999999999999874 44466777776543
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=110.05 Aligned_cols=191 Identities=16% Similarity=0.160 Sum_probs=150.2
Q ss_pred cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE------------------cCceeEEE
Q 014475 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------------------GGVSATIV 193 (424)
Q Consensus 132 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~~~l~ 193 (424)
|...++|....||.+++||..++....+.. +. ..-.+..++..|.- .++...++
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~-----p~---~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFA-----PI---ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeec-----cc---hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 456789999999999999997643211110 01 11122333333321 12226788
Q ss_pred EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
-|...|.|.+|+...++....+. |.+.++++.++.+-..|.+++.|+.+..|+.... ..+........
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~ 145 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKP 145 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---------eeeeeeccCCC
Confidence 89999999999999999988887 8899999999999999999999999999999986 56777778888
Q ss_pred CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec-----Cceee-eccCCCceeeccCCC
Q 014475 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PLYLN-LGSFSNPHTSSRRHG 341 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~-~~~~d~~i~iw~~~~ 341 (424)
.+.+++.+| +..+++++ +.|++||+++++.+.+|.+|.++|++++|..+ |.+++ +...+..+.+|-+..
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999999 89999886 57999999999999999999999999999987 55554 455666788887764
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=4.1e-11 Score=108.80 Aligned_cols=280 Identities=15% Similarity=0.141 Sum_probs=187.7
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEe------------eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRY------------KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS 69 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~ 69 (424)
+.++|.|+ .||.++|-.+.+...-... +...+|...|..+. |..+.+.|-++..+ |.|.||-+-
T Consensus 26 ~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT--WNe~~QKLTtSDt~-GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT--WNENNQKLTTSDTS-GLIIVWMLY 101 (1189)
T ss_pred CCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE--eccccccccccCCC-ceEEEEeee
Confidence 36899999 9999999988764322111 22345667777777 99888888877776 999999998
Q ss_pred CCcee---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee-eeeccccCCeEEEEEccCCcEEEEeeCCCc
Q 014475 70 KPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145 (424)
Q Consensus 70 ~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~ 145 (424)
++... ........|.+++|+.||..++..-.||.|.+=.++..+.- +.+++ .....+.|++|.+.++.+-.+|.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange 179 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGE 179 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCc
Confidence 77643 33445778999999999999999999999988766433221 12222 22347899999999888889999
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc------CceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 219 (424)
+.++|.+......-.....-.....+......|..+.|... .+...|+.+...|.+.|-.-.+......+..+.
T Consensus 180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 99999865432111100000001112222334556666421 112689999999999887665555555566678
Q ss_pred ceeEEEECCCCCEEEEEeCCC---------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 220 VIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
.+....|+++|..|++++.+. .|.+|..-. +.+.+++.....|++++|-. |-.++.+ .|
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~A-vd 328 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIA-VD 328 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEE-ec
Confidence 899999999999999988653 344444332 45667777788899999976 4333333 35
Q ss_pred CcEEEEeCC
Q 014475 290 GMVRVWDPI 298 (424)
Q Consensus 290 g~i~iwd~~ 298 (424)
+.|.+=+++
T Consensus 329 sfiyfanIR 337 (1189)
T KOG2041|consen 329 SFIYFANIR 337 (1189)
T ss_pred ceEEEEeec
Confidence 555554443
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=128.66 Aligned_cols=221 Identities=17% Similarity=0.298 Sum_probs=168.9
Q ss_pred CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-cccCCeEEEE
Q 014475 51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLV 129 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~ 129 (424)
+....+..+ +...-|..+.... ....+-..|.++.=+|...+.++|+.||.|++|....++.+..++ .....|+.+.
T Consensus 2181 ~~~~~~n~~-~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLP-WLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCC-ccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 333333333 5555555444333 334456788999999999999999999999999998888777664 2347899999
Q ss_pred EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEec
Q 014475 130 FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSL 206 (424)
Q Consensus 130 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~ 206 (424)
|+.+|+.+..+..||.+.+|... .++....+.|.....+..|-.. .+++++ .++.+.+||.
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~------------pk~~~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS------------PKPYTSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred hcccCCceeeeccCCceeecccC------------CcceeccccCCccccceeeeeh----hhhccccCCCCCcccchhc
Confidence 99999999999999999999983 4456677889998888888653 455543 5778999996
Q ss_pred CCC--ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEE
Q 014475 207 LKG--RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284 (424)
Q Consensus 207 ~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 284 (424)
.-. .......|.+.++++++.|..+.|++|+.+|.+++||++.. +....++. +....+++
T Consensus 2323 l~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~~~~~f~ 2384 (2439)
T KOG1064|consen 2323 LLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LDTREYFV 2384 (2439)
T ss_pred ccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hhhhheee
Confidence 532 22222449999999999999999999999999999999986 33333332 33478999
Q ss_pred EeCCCCcEEEEeCCCCcEEEEEe
Q 014475 285 SGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 285 t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
+|+..|.++||++.....++++.
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ccCcccceEEEEccccchhhcCc
Confidence 99999999999999888877766
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.46 E-value=1.5e-10 Score=101.17 Aligned_cols=283 Identities=15% Similarity=0.184 Sum_probs=193.0
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCCCCeeEEEEC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPAEPIKPIAAN 89 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~~~v~~~~~s 89 (424)
..+.+||+.+|..+..+.....+-.+-..+. |+.+.+++|-... ..++++++ ++... ........|....|+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k--~s~~D~y~ARvv~--~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLK--FSIDDKYVARVVG--SSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceee--eeecchhhhhhcc--CeEEEEec-CCccccCchhhccccceeeEEec
Confidence 4699999999999998876654422222455 9999999887755 68999997 33332 222235678899999
Q ss_pred CCC--CEEEE-----ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-----------CCCcEEEEeC
Q 014475 90 SHG--TYIAG-----GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-----------EDGCVRIWSL 151 (424)
Q Consensus 90 ~~~--~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-----------~dg~i~iwd~ 151 (424)
|.+ ..||. .+..+++++|.+..+..+.+-.-..-.=..+.|.+.|++|+.-- ....++++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 963 33443 35678899999987766655433333335688899888766421 1245778877
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
.. . -+.......++|.+.+|.|.+.+--+++|..+-.+.++|++.. +.....+..=+.+.|+|.++
T Consensus 263 ~e----------~--~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r 328 (561)
T COG5354 263 TE----------R--SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHER 328 (561)
T ss_pred cc----------c--ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCccc
Confidence 42 1 1122225678999999999986455566678899999999866 44444566677889999999
Q ss_pred EEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC------CCCcEEEEeCCCCc
Q 014475 232 VFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------EDGMVRVWDPITHN 301 (424)
Q Consensus 232 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~------~dg~i~iwd~~~~~ 301 (424)
++++++-+ |.+.+||..... .++..+.+. ..+-+.|+| +.++.+.. .|..|.|||+....
T Consensus 329 ~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEEEecCCccccceEEeccCCce--------EEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 99987654 689999988763 444455432 334567999 88777664 37889999986432
Q ss_pred EEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
+. ..+.+.|.|.+++..+.+.+.
T Consensus 399 -~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 399 -VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -hh-------hhhhccccCCcccceeeccCC
Confidence 22 456677777777766655554
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.2e-09 Score=91.89 Aligned_cols=268 Identities=13% Similarity=0.106 Sum_probs=176.0
Q ss_pred eeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccC--ccee--eeeccccCCeEEEE
Q 014475 61 GSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS--GRLL--KKWHAHYRAVTCLV 129 (424)
Q Consensus 61 g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~--~~~~--~~~~~~~~~i~~~~ 129 (424)
+-|++|++++..- .......+.++-++|+|+++.|.++.. +|.|.-|.++. |++. ........+...++
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs 95 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS 95 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence 7899999984432 233446778899999999999988754 46677777764 4432 22222334448899
Q ss_pred EccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCc----------eeEEEEEEcCceeEEEEEeC-
Q 014475 130 FSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----------ITDIVIGYGGVSATIVSASE- 197 (424)
Q Consensus 130 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~~~~~- 197 (424)
+++++++++++.. .|.|.++-+++... .........|.++ +....+.|++ +++++..-
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~--------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG 165 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGS--------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLG 165 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCc--------cccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecC
Confidence 9999999988865 57899998865211 1111111122222 6677888998 77777653
Q ss_pred CCcEEEEecCCCceeeee----ecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeec---ccC
Q 014475 198 DRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHS 269 (424)
Q Consensus 198 d~~v~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~ 269 (424)
-..|.+|++..+++...- ......+.+.|+|++++.++.+ -+++|.+|..+...... ...+.+..+. ...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EEeeeeccCccccCCC
Confidence 346999999977654332 3567789999999999988766 57899999998852111 0111122221 123
Q ss_pred cCeEEEEecC-CCEEEEeCC-CCcEEEEeCCCC-cEEEE---EeccCCCeeEEEEEecCceeeeccCCC-ceeeccCC
Q 014475 270 KAVTCLAYST-GDLLISGSE-DGMVRVWDPITH-NIVRM---FRLAKGPVNNILVVRRPLYLNLGSFSN-PHTSSRRH 340 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~-~~~~~---~~~~~~~v~~l~~s~~~~~l~~~~~d~-~i~iw~~~ 340 (424)
....++..++ |++|.++.. ...|.+|.+... ..+.. ...+...-+...|++.+++|+++..++ .|.++...
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 4567788899 998888763 347888877643 22222 222333468899999999998877555 57777665
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.39 E-value=1.6e-10 Score=92.90 Aligned_cols=235 Identities=10% Similarity=0.019 Sum_probs=158.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~ 81 (424)
.+||.|+ +-|...+|...+.+.... .+..+.+.|.-+. ++......+..++.| .++++.+++.+....... ..-
T Consensus 85 ~~la~gG-~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~-r~cd~~~~~~i~snd-ht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGG-ASGQFDLFACNTNDGHLY--QCDVSNNDVTLVK-RYCDLKFPLNIASND-HTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cEEEecc-ccceeeeecccCccccee--eecccccchhhhh-hhcccccceeeccCC-cceeEEEEecCcccceeecccc
Confidence 5899999 999999999987665533 3444556555443 122223344455555 888888877554332221 113
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCc-cee-e-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLL-K-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~-~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
.+.++++++|++++++.+....|..|.+... +.+ . ......+.-.+..|+.....+|++..||++.|||++....+-
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 4899999999999999999999999998654 222 2 223344556788999999999999999999999998743221
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---------cceeEEEECCC
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPA 229 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~ 229 (424)
.. ...+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++++..+.+..+ ..|...+|+.+
T Consensus 240 ~~------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 240 AE------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred hh------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 11 1122345899999999998776677777777889999999998776665422 22555666666
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 014475 230 EHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~ 249 (424)
+..+.+.+.+ .+.-|++..
T Consensus 314 n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 314 NESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred Ccccccccch-hhheeeccc
Confidence 5555544432 234444443
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3e-10 Score=100.44 Aligned_cols=275 Identities=9% Similarity=0.171 Sum_probs=183.1
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG 92 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~ 92 (424)
-.+.+|+++++.....+..... .+ .+.. |++|..+.+--.. +.+++|+..+.+......|...|+.+.+||.+
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q--~~-W~~q--fs~dEsl~arlv~--nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQ--NG-WVPQ--FSIDESLAARLVS--NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP 177 (566)
T ss_pred Cceeeeeeccceehhheehhhh--cC-cccc--cccchhhhhhhhc--ceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence 3477999999766655543321 11 4666 9998887665555 79999999987777777889999999999963
Q ss_pred --CEEEE-----ecCCCcEEEEEccCcceeeee--cc-ccCCeEEEEEccCCcE-EEEeeC--C---------CcEEEEe
Q 014475 93 --TYIAG-----GGQSGDIYMWEVASGRLLKKW--HA-HYRAVTCLVFSEDGSF-LISGSE--D---------GCVRIWS 150 (424)
Q Consensus 93 --~~l~~-----~~~dg~v~iwd~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~-l~s~~~--d---------g~i~iwd 150 (424)
..+|+ .+.-+.|+||..........+ +. ....=..+.|++-|.- |+.++. | .++++.+
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 34443 355567999987633221111 10 1222345778775543 332222 2 3466776
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
++. .. ...--...++|.++.|++++..--++.|-.-..+.|+|++ +.++..+ ..++-+++-|+|.|
T Consensus 258 t~g-----------~s-~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 258 TQG-----------ES-VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNPHG 323 (566)
T ss_pred ecC-----------ce-EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECCCC
Confidence 641 11 1112235789999999999954445566678899999986 4555444 45677889999999
Q ss_pred CEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC------CCcEEEEeCCCC
Q 014475 231 HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------DGMVRVWDPITH 300 (424)
Q Consensus 231 ~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~------dg~i~iwd~~~~ 300 (424)
++++.++- .|.+.+||..+. +.+..+.. ..-+-+.|+| |++|+|+.. |+.++||+.. |
T Consensus 324 ~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G 391 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-G 391 (566)
T ss_pred CEEEEeecCCCCCceEEEeccch---------hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-C
Confidence 99988765 478999999985 44555543 3345578999 999999874 7889999964 7
Q ss_pred cEEEEEeccCCCeeEEEEEec
Q 014475 301 NIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~ 321 (424)
..+..-.-.. +...+.|-|-
T Consensus 392 ~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 392 SLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ceeehhhhhH-hHhheeeeec
Confidence 7665443221 5777788763
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.7e-10 Score=100.59 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=165.7
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH 91 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~ 91 (424)
..++|||+.+|...+.+.....+-..-... +||.|++++|--.. ..|.|++..+-.+. .+...-..|....|+|.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCC
Confidence 469999999999999887654332222333 49999999998877 58999998774433 23445678999999999
Q ss_pred CCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee----------CCCcEEEEeCCcccc
Q 014475 92 GTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS----------EDGCVRIWSLLTVFE 156 (424)
Q Consensus 92 ~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~ 156 (424)
++.||.=.. -..+.+-.+.+++.+++-+-|+-.=..+.|-.+|.+|+.-- .-..+-|+.++.
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--- 434 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--- 434 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec---
Confidence 998886432 23477778888877777665554444567777888876431 112345555533
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCC-Cc---eeeeeecCcceeEEEECCC
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLK-GR---LLRNIVFPSVIDAIALDPA 229 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~-~~---~~~~~~~~~~i~~~~~~~~ 229 (424)
+..++... .-...|...+|-|.|+ .+++-+. ..++.+|-+++ .. .+..+ .....+.+.|+|.
T Consensus 435 -------KdIpve~v-elke~vi~FaWEP~gd--kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-dk~~~N~vfwsPk 503 (698)
T KOG2314|consen 435 -------KDIPVEVV-ELKESVIAFAWEPHGD--KFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-DKKFANTVFWSPK 503 (698)
T ss_pred -------cCCCceee-ecchheeeeeeccCCC--eEEEEEccccccceeEEEeecCCCchhhhhhh-cccccceEEEcCC
Confidence 22222222 2345777888999884 4443332 35688888873 22 22222 2356789999999
Q ss_pred CCEEEEE---eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 230 EHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 230 ~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
|++++++ +..|.+..+|+..... + ......| ...+.+.|.| |+|++|++.-.
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~-------k-~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADL-------K-DTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhh-------h-hccCccc-cccccceECCCCCEEEEeeehh
Confidence 9998875 4578999999986321 1 1111223 3457789999 99999998644
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.37 E-value=1.4e-09 Score=94.40 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=147.0
Q ss_pred CCceEEEeCCCCceEEEeeCC----CCCCCceE--Eec--ceee-cCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLA--CVG--QRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~--~~~--~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.|.|.++|.++....+ +.-. ........ .+. ..|+ .+|.+++..+. |...+.+...+ ..+...+.+.
T Consensus 286 ~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--GkaFi~~~~~~-~~iqv~~~~~ 361 (668)
T COG4946 286 AGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--GKAFIMRPWDG-YSIQVGKKGG 361 (668)
T ss_pred CCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--CcEEEECCCCC-eeEEcCCCCc
Confidence 4789999987655432 3211 01111111 111 0122 35777777776 77777765433 3355567777
Q ss_pred eeEEEECCCCCEEEEecCCC-cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 83 IKPIAANSHGTYIAGGGQSG-DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
|.-..+.-+++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+++|++++++-....+.+.|++++..
T Consensus 362 VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv----- 435 (668)
T COG4946 362 VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV----- 435 (668)
T ss_pred eEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-----
Confidence 99999988888999999999 899999877764 45556778899999999999999998888899999977421
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
...-+...+-|+...|+|++ .+++-+--+| .|+++|+..++........+.-.+-+|.|++++|+--+
T Consensus 436 ------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 436 ------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ------eEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 22224456789999999998 8998776655 68999999888766655555566778999999877544
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.5e-10 Score=105.28 Aligned_cols=276 Identities=13% Similarity=0.160 Sum_probs=199.8
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCcee----------------eeecCCCCeeEEEECCCCCEEEEecC
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----------------VKSLPAEPIKPIAANSHGTYIAGGGQ 100 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----------------~~~~~~~~v~~~~~s~~~~~l~~~~~ 100 (424)
..+.|++ |.....+++++|.+ |.++|-.+.+.... ...+|.+.|.-+.|+.+.+.|-+...
T Consensus 15 vkL~c~~--WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAE--WNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEE--EcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4578888 99999999999998 99999988653311 12357889999999999999999999
Q ss_pred CCcEEEEEccCcceeeee--ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 101 SGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 101 dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
+|.|.+|-+-.|.-...+ ....+.|.+++|..+|..+.....||.|.+=.++. ....-+.+++ ...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----------NRIwgKeLkg--~~l 159 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----------NRIWGKELKG--QLL 159 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----------ceecchhcch--hec
Confidence 999999999888655443 23456789999999999999999999998877743 1112222222 123
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeee-----cCcceeEEEEC--------CCCCEEEEEeC
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIV-----FPSVIDAIALD--------PAEHVFYAGSR 238 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~-----~~~~i~~~~~~--------~~~~~l~~~~~ 238 (424)
..+.|+++. ..++.+-..|.+.++|.... .+..... .+..+..++|. |+...|+++..
T Consensus 160 ~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 160 AHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred cceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 367889887 77788888899999996532 1111111 23446666664 57788999999
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---------CcEEEEeCCCCcEEEEEec
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---------GMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---------g~i~iwd~~~~~~~~~~~~ 308 (424)
+|.+.+..-.+.. .++.. ...-.+..+.|++ |..|+.++.+ +.|.+|. .-|+.+.+++.
T Consensus 238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred CceehhhhhcCCC--------CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 9998887655432 22222 2236688899999 9999998753 2566666 44888999998
Q ss_pred cCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
....|++++|-..|-.+|.+ .|+.|.+=+++.
T Consensus 307 pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 307 PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 88999999998887776654 456666555553
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.35 E-value=1.6e-09 Score=99.37 Aligned_cols=310 Identities=12% Similarity=0.053 Sum_probs=182.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCC-------CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK 76 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~ 76 (424)
.+++++ .+|.+.-+|.++|+.+-+.+..... ...+.. . ...++..+++++.+ |.+..+|.++++..++
T Consensus 71 ~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 71 KVYAAD-RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-G--VTVAGGKVYIGSEK-GQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEEEEC-CCCeEEEEECCCCcEeeEEcCCCccccccccccccccc-c--cEEECCEEEEEcCC-CEEEEEECCCCCCccc
Confidence 456667 7899999999999988665432210 000000 0 11234455556565 9999999999988877
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE-EEEcc--CCcEEEEeeCCCcEEEEeCCc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSE--DGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~-~~~~~--~~~~l~s~~~dg~i~iwd~~~ 153 (424)
......+.+--.- .+..++++..+|.+..+|.++|+.+..+......... ..-+| .+..++.++.+|.+..+|..+
T Consensus 146 ~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred ccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 6554443321111 2445667778899999999999988776532111000 00111 133566777889999999877
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
+....+...........+ .....+..+| .+ ..++.++.+|.+..+|..+++.+........ ..+. ..+.
T Consensus 225 G~~~W~~~~~~~~~~~~~----~~~~~~~~sP~v~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~ 295 (394)
T PRK11138 225 GQLIWQQRISQPTGATEI----DRLVDVDTTPVVVG--GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGG 295 (394)
T ss_pred ChhhheeccccCCCccch----hcccccCCCcEEEC--CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECC
Confidence 654322111000000000 0000011111 12 4677777899999999999988766543221 1111 2567
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (424)
.+++++.+|.+..+|..++...... ... .+ ....+.... +..++.++.||.|...|..+|+.+...+....
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~------~~~-~~-~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQ------SDL-LH-RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcc------ccc-CC-CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 7888889999999999887421110 000 01 111111111 67888899999999999999999888775443
Q ss_pred CeeE-EEEEecCceeeeccCCCceeeccC
Q 014475 312 PVNN-ILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 312 ~v~~-l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
.+.+ ..+ .+..|..++.||.+..++.
T Consensus 367 ~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3332 222 2447888899999887764
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=1.8e-09 Score=107.24 Aligned_cols=311 Identities=13% Similarity=0.131 Sum_probs=192.6
Q ss_pred CCCceEEE----eCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-------------Cc-
Q 014475 11 ADTGIGCW----DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-------------PQ- 72 (424)
Q Consensus 11 ~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-------------~~- 72 (424)
.+|.|.+. |..+...- . -..-..+|.+++ |+||+..++.+..+ +++.+...+- ++
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E--~--VG~vd~GI~a~~--WSPD~Ella~vT~~-~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIE--I--VGSVDSGILAAS--WSPDEELLALVTGE-GNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred CCceEEEEEccCCCCCceeE--E--EEEEcCcEEEEE--ECCCcCEEEEEeCC-CEEEEEeccceEEEEeecCccccCCC
Confidence 45888888 54433222 1 112346799999 99999999999887 7777754320 00
Q ss_pred ---------eeeee-------------c------------CCCCeeEEEECCCCCEEEEecC---C---CcEEEEEccCc
Q 014475 73 ---------VEVKS-------------L------------PAEPIKPIAANSHGTYIAGGGQ---S---GDIYMWEVASG 112 (424)
Q Consensus 73 ---------~~~~~-------------~------------~~~~v~~~~~s~~~~~l~~~~~---d---g~v~iwd~~~~ 112 (424)
..... . ..+.-..++|-.||.++|+.+. . ..++||+- +|
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG 246 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EG 246 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-Cc
Confidence 00000 0 1224467889999999998764 2 46999994 57
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
....+-..-.+--.+++|.|.|+++++... ...|.+|.-+.. ........+......|..+.|+.++
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds-- 316 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDS-- 316 (928)
T ss_pred eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc--------EeeeEecCCCCCCceeeEEEECCCC--
Confidence 766555544555567999999999988765 345667764321 1111222223456788999999998
Q ss_pred eEEEEEeCCCcEEEEecCCCce--eeeee--cCcceeEEEECCC-CCEEEEEeCCCcEEEEEc----CCCCCCC------
Q 014475 190 ATIVSASEDRTCKVWSLLKGRL--LRNIV--FPSVIDAIALDPA-EHVFYAGSRDGSIYIAAL----NAESPST------ 254 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~--~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~----~~~~~~~------ 254 (424)
..|+....|. |.+|-..+..- .+.+. ....+..+.|+|. ...|.+.+.+|.+..+++ .......
T Consensus 317 ~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~ 395 (928)
T PF04762_consen 317 EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT 395 (928)
T ss_pred CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceE
Confidence 7888877555 99999877542 22232 3344566999994 556777777777765544 2111000
Q ss_pred ---------------CCcCceee-eeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE--------EEEEe--
Q 014475 255 ---------------SSYGMHII-GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--------VRMFR-- 307 (424)
Q Consensus 255 ---------------~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~--------~~~~~-- 307 (424)
....+.+. ...-.-..+|.+++|++ +..+++-..||.|.+|....... ...+.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD 475 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc
Confidence 00000111 01112357899999999 66688888999999998543221 11121
Q ss_pred --------ccCCCeeEEEEEecCceeeeccCC---CceeeccCC
Q 014475 308 --------LAKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRH 340 (424)
Q Consensus 308 --------~~~~~v~~l~~s~~~~~l~~~~~d---~~i~iw~~~ 340 (424)
.....+..++|..+...++....+ ..+.+++..
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 476 SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 123467889998888777665554 567777774
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=1.4e-11 Score=112.03 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=189.0
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C--CCCeeEEEECCC--CCEEEEecCCCcEEEEEccCc
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P--AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~--~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~ 112 (424)
++.++. .+|.|+-+|.++.- -+.+-|++.+-...+.. | .-.|-...|+|. ..+-++......-.+|++...
T Consensus 26 ~~~a~s--i~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 26 GFNAVS--INPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ccccee--eccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 344555 88999999999885 56666776554333322 2 345777888874 334455455566788988543
Q ss_pred ---ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475 113 ---RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (424)
Q Consensus 113 ---~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (424)
.....+.+|...|+.+.|+| ....+++++-|-.+..||+++ ...++..+..-......++|+...
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS----------p~~p~ys~~~w~s~asqVkwnyk~- 170 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS----------PHRPFYSTSSWRSAASQVKWNYKD- 170 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC----------CCcceeeeecccccCceeeecccC-
Confidence 34456688999999999998 456789999999999999976 233444455555566778898776
Q ss_pred eeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 189 SATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 189 ~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
..+++.+..+.|.+||.+.+. ++..++ +-..++.+.|.. ....+++.+.|++++.||....... -...
T Consensus 171 -p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--------~~~~ 241 (1081)
T KOG0309|consen 171 -PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--------SKRT 241 (1081)
T ss_pred -cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--------ccee
Confidence 456666778889999999765 444444 666777777766 4456888999999999999775421 1111
Q ss_pred cccCcCeEEEEecC-CCEEE-----------EeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecC----------
Q 014475 266 SDHSKAVTCLAYST-GDLLI-----------SGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRP---------- 322 (424)
Q Consensus 266 ~~~~~~i~~~~~~~-~~~l~-----------t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~---------- 322 (424)
.....+|..-.+-| ++-.. --..+.....|+..+ .+++++|.+|...|....|-..+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rd 321 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRD 321 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccc
Confidence 22234454445555 22111 111223334455444 46899999999988887775433
Q ss_pred ceeeeccCCCceeeccCCC
Q 014475 323 LYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 323 ~~l~~~~~d~~i~iw~~~~ 341 (424)
-.|++-+.|..+++|-+..
T Consensus 322 fQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 322 FQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeEEEeecCCceEeeeccH
Confidence 3689999999999998863
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=3.4e-09 Score=96.79 Aligned_cols=267 Identities=15% Similarity=0.113 Sum_probs=164.6
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecCCCCee-EEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC 127 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~ 127 (424)
.+..+++++.+ |.|..+|..+++..+.......+. ... .++..+++++.+|.+..+|.++|+.+....... .+.+
T Consensus 64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS 139 (377)
T ss_pred ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence 35566677666 999999999988877655444332 222 246778888899999999999999887654322 2221
Q ss_pred EEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475 128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (424)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~ 207 (424)
.-.. .+..++.++.+|.+..||.+++....+....... ........+ .. .+ ..++.+..++.+..+|.+
T Consensus 140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--~~~~~~~sp----~~-~~---~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--LTLRGSASP----VI-AD---GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc--eeecCCCCC----EE-EC---CEEEEECCCCEEEEEEcc
Confidence 1111 2446777788999999999775432221110000 000001111 11 12 356778888999999999
Q ss_pred CCceeeeeecCcc--------eeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475 208 KGRLLRNIVFPSV--------IDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (424)
Q Consensus 208 ~~~~~~~~~~~~~--------i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (424)
+++.+.......+ ...+.-+| .+..+++++.+|.++.+|..+++. +-... .. .......
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~---------~W~~~-~~-~~~~p~~ 277 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV---------LWKRD-AS-SYQGPAV 277 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE---------EEeec-cC-CccCceE
Confidence 9987665432110 00111122 356788888999999999988742 11111 11 1111111
Q ss_pred cCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 278 STGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 278 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
. ++.++.++.||.+..+|..+++.+.......+ ....... .+..|++++.+|.+.+++..+++.
T Consensus 278 ~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 278 D-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred e-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 1 67888888999999999999988866532222 2222222 466888999999999999887754
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.6e-11 Score=108.32 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=159.9
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
..|.+.|..++--.+.+-+++++.|.+|++|.++.. .+..+++.|..+|.++.|..+.++++++ ||-|.+|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 357778888877777888999999999999998642 4667889999999999999888877765 8899999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE-eCCCcEEEEecCCCceeeeee------cCccee
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIV------FPSVID 222 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~------~~~~i~ 222 (424)
|.--+....+.. .....+.+..+..-++-....++.+ +...+|+++|.+..+-...+. ....+.
T Consensus 810 DPFigr~Laq~~---------dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 810 DPFIGRLLAQME---------DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cccccchhHhhh---------cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 984432211111 1112233333333333221344444 778899999999887666654 235688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEE-EeCCCCc
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRV-WDPITHN 301 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~i-wd~~~~~ 301 (424)
+++..|.|++++++-.+|.|.+.|.+++. .+..++..+.....++-..+..++....|.++.+ |..-++.
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence 99999999999999999999999999984 3444433333333443322677777778888888 8877776
Q ss_pred EEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
...+.+....+..- .-.-|..|+++.....+.+|
T Consensus 952 mh~q~kpppepahf--lqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 952 MHLQDKPPPEPAHF--LQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred eeeccCCCCcchhh--hhccCceeEEeccCcEEEEE
Confidence 66655543332211 11123445555444445554
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=8.4e-09 Score=104.54 Aligned_cols=255 Identities=9% Similarity=0.015 Sum_probs=155.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeec--------------CCCCeeEEEECCCCCEEEEec-CCCcEEEEEcc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------------PAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVA 110 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~ 110 (424)
+++.+..+.++...++.|+++|........... .-.....++++++++.|+++. ..+.|+++|+.
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence 666544444444444899999987543322211 012358899999888665554 45679999987
Q ss_pred Ccceeeeeccc-----------------cCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceE---E
Q 014475 111 SGRLLKKWHAH-----------------YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---H 169 (424)
Q Consensus 111 ~~~~~~~~~~~-----------------~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~ 169 (424)
++.. .++.+. -.....++++| ++..+++.+.++.|++||..++....-......... .
T Consensus 655 ~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~ 733 (1057)
T PLN02919 655 NETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS 733 (1057)
T ss_pred CCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc
Confidence 6543 222110 12346899999 566677777888999999866422100000000000 0
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----------------------cCcceeEEEEC
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----------------------FPSVIDAIALD 227 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----------------------~~~~i~~~~~~ 227 (424)
.....-.....+++++++. ..+++-+.++.|++||+.++....... .-.....++++
T Consensus 734 ~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 734 GTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred cccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 0001113456789999873 356666778999999998765321110 00124688999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC----ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
++|..+++-..+++|++||..++........ ..--....+.-.....+++++ ++++++-+.++.|++||+.+++.
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999888888999999999987531100000 000000112223577899999 88888888999999999998865
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=7.3e-09 Score=90.13 Aligned_cols=214 Identities=15% Similarity=0.140 Sum_probs=152.6
Q ss_pred EECCCCCEEEEecCCCcEEEEEccCcceeeee---cc-----ccCCeE---EEE-Ecc-CCcEEEEeeCCCcEEEEeCCc
Q 014475 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HA-----HYRAVT---CLV-FSE-DGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~-----~~~~i~---~~~-~~~-~~~~l~s~~~dg~i~iwd~~~ 153 (424)
..+.||+.++- ...|.|++||.++.+....- .. ....+. -+. |++ +|.+++..|. |...+.+...
T Consensus 273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 34668888776 45688999999876432211 00 011111 111 333 6888888875 6777777643
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (424)
+. ...-+|...|.-..+..++ +-++.|..|| .+-++|.++++..+....-+.|.++..+|+|++
T Consensus 351 ~~-------------~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 351 GY-------------SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred Ce-------------eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcE
Confidence 21 1123566778888887777 6788889888 899999999887777667789999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC----cEEEEeCCCCcEEEEEe
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----MVRVWDPITHNIVRMFR 307 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg----~i~iwd~~~~~~~~~~~ 307 (424)
++++.....|.+.|+.++. ....-+...+-|+...|+| ++++|-+--+| .|+++|+..++....-.
T Consensus 416 ~vvaNdr~el~vididngn---------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 416 VVVANDRFELWVIDIDNGN---------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEEcCceEEEEEEecCCC---------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 9999999999999999985 2223344567899999999 99999887665 58999999877655433
Q ss_pred ccCCCeeEEEEEecCceeee
Q 014475 308 LAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~ 327 (424)
..+-=.+-+|.||+++|--
T Consensus 487 -~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred -CcccccCcccCCCCcEEEE
Confidence 3333355688899987743
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.26 E-value=1.3e-10 Score=98.68 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=116.6
Q ss_pred eEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce-eEEEEEeCCCcEEE
Q 014475 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKV 203 (424)
Q Consensus 125 i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~d~~v~i 203 (424)
...+..++.+++++++..+....+++.....+ ..++..... -...-+++.+..+... ......+....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-------cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeee
Confidence 34456677888888888888877887755221 111222221 1222233444433310 22223344455666
Q ss_pred EecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475 204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (424)
Q Consensus 204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 283 (424)
|....+.+...+.|-..+..++++||+++++++..|..|++-...... ..-.-.-||..-|..++.-++..|
T Consensus 137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDNYLL 208 (390)
T ss_pred ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccCcee
Confidence 666667777777789999999999999999999999999998887652 222234579999999999988889
Q ss_pred EEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 284 ISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 284 ~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
++||.|++|++||+.+|+++.++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999887765
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=7.3e-09 Score=104.97 Aligned_cols=240 Identities=15% Similarity=0.085 Sum_probs=151.5
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCC--C---------CCCceEEecceeecCCCccccCCCCceeEEEEECCCCce
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCA--S---------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV 73 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~ 73 (424)
.++-. .++.|++||.. |..+..+.... + .-..-..++ +.++++.+.++....+.|+++|..++..
T Consensus 583 yVaDs-~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~Ir~id~~~~~V 658 (1057)
T PLN02919 583 FISDS-NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHALREIDFVNETV 658 (1057)
T ss_pred EEEEC-CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCceEEEEecCCCEE
Confidence 34444 67889999975 55554443211 0 011234455 8888887666655448899999877655
Q ss_pred eeeecC-----------------CCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeecc---------------
Q 014475 74 EVKSLP-----------------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA--------------- 120 (424)
Q Consensus 74 ~~~~~~-----------------~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------- 120 (424)
...... -.....++|+| ++.++++...++.|++||..++.... +.+
T Consensus 659 ~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 659 RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTST 737 (1057)
T ss_pred EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccc
Confidence 332110 12346899999 56666777778899999987764321 111
Q ss_pred ccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhccccc--ccceEEeecC--------CcCceeEEEEEEcCce
Q 014475 121 HYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRA--SHLYLHSFTG--------HTLRITDIVIGYGGVS 189 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~i~~~~~~~~~~~ 189 (424)
.......++++|+++. +++-+.++.|++||+.++......... .......+.. .-.....+++++++
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-- 815 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-- 815 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC--
Confidence 1134567999999884 555566789999999764211000000 0000000000 11123578888887
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeec--------------CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--------------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
..+++-+.++.|++||..++........ -.....++++++|+.+++-+.++.|++||+++..
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 7888888899999999987765433221 1246789999999988888899999999998864
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.23 E-value=5.6e-09 Score=84.19 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=158.4
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECC-----CCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEcc-C
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSE-D 133 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~-~ 133 (424)
..+-+|+..+........- ..+.|-| .-.+||.|+..|...+|.+.+.+.... ...|...|+-+.=.. .
T Consensus 52 ~sv~i~~~y~N~~~iv~~y----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~ 127 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL 127 (344)
T ss_pred eeeEeccccCCchhhEEee----ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc
Confidence 5677787654431111111 3344444 345899999999999999986654333 233443332221111 1
Q ss_pred CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c
Q 014475 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R 210 (424)
Q Consensus 134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~ 210 (424)
.-.+..++.|.++++.+++-.. .. ...|.. .+.++++++++ .++++.+....|..|.+... +
T Consensus 128 ~~~~~i~sndht~k~~~~~~~s---------~~----~~~h~~~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~se 192 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGDS---------NK----FAVHNQNLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESE 192 (344)
T ss_pred ccceeeccCCcceeEEEEecCc---------cc----ceeeccccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccc
Confidence 2236677888899999885421 11 112222 37788899888 89999999999999988743 2
Q ss_pred eeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEE
Q 014475 211 LLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLI 284 (424)
Q Consensus 211 ~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~ 284 (424)
-+..+. ..+.-.+..|+.....+|+++.||.+.|||++....... ....+-..|.+.+..+.|++ -++|.
T Consensus 193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEE
Confidence 222222 445667889999999999999999999999998653221 12223345899999999997 34566
Q ss_pred EeCCCCcEEEEeCCCCcEEEEEeccCC--------CeeEEEEEecCceeeec
Q 014475 285 SGSEDGMVRVWDPITHNIVRMFRLAKG--------PVNNILVVRRPLYLNLG 328 (424)
Q Consensus 285 t~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~l~~~ 328 (424)
..-.-+.+.+-|+++++..+.+..... .|..-.|+.++..+.+.
T Consensus 269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 665667899999999987766553322 25555565555544443
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.22 E-value=6.5e-08 Score=82.68 Aligned_cols=223 Identities=18% Similarity=0.172 Sum_probs=146.9
Q ss_pred EEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc-cCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 85 ~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
++.|.+ ++.++++-...+.|..|+..+++... +... ....+.+. +++. ++.+... .+.++|+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g-------- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGR-LYVADSG-GIAVVDPDTG-------- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSE-EEEEETT-CEEEEETTTT--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCE-EEEEEcC-ceEEEecCCC--------
Confidence 567887 77777777778999999988775533 2222 26778887 5655 5555554 4566688663
Q ss_pred cccceEEee--cC-CcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475 163 ASHLYLHSF--TG-HTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 163 ~~~~~~~~~--~~-~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
+...+... .. .....+++++.+++ ++.++.... |.|..++.. ++.......-...+.++|+|+++
T Consensus 71 -~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 71 -KVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp -EEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred -cEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence 22222222 22 45678899999988 666665543 557778876 55555555556678999999998
Q ss_pred EEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 232 VFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 232 ~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
.|++ -+..+.|..+++........ ..+....+....+..-.+++.. |++.++.-..+.|.++|.+ |+.+..+...
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred heeecccccceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 7764 56778899999975432100 0112222333333478899988 8888887788999999977 9999998877
Q ss_pred CCCeeEEEEE-ecCceeee
Q 014475 310 KGPVNNILVV-RRPLYLNL 327 (424)
Q Consensus 310 ~~~v~~l~~s-~~~~~l~~ 327 (424)
...+++++|. ++...|..
T Consensus 224 ~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSEEEEEEESTTSSEEEE
T ss_pred CCCEEEEEEECCCCCEEEE
Confidence 6789999995 56555543
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.3e-09 Score=97.58 Aligned_cols=247 Identities=15% Similarity=0.133 Sum_probs=178.3
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCC------------cEEEEeeCCCcE
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG------------SFLISGSEDGCV 146 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~s~~~dg~i 146 (424)
+...-.++.|+|.| ++|.|+. ..|.+.|..+.+.++.+..|...|+.+.|.|.. -.|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34456788999877 5777765 479999999999999999999999999998621 246777788999
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce--eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeE
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDA 223 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~ 223 (424)
.+||... ...+..+..|..++.+++|-+..+. ..|++-....++.+|+..+|+...... ......|
T Consensus 92 il~d~~~-----------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 92 ILVDFVL-----------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred EEEEehh-----------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 9999955 2234456778899999999875432 567777888899999999999988877 4455667
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc----------------C---------eEEEEe
Q 014475 224 IALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK----------------A---------VTCLAY 277 (424)
Q Consensus 224 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------i~~~~~ 277 (424)
+.+.| +.+.+..-+..|.+.+-+.-.......+ .+..+.-..|.. . ...++|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p--gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP--GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCC--ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 99999 6777877777887777665433221111 111111112211 0 122566
Q ss_pred cC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC--ceeeeccCCCceeeccCCC
Q 014475 278 ST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 278 ~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~d~~i~iw~~~~ 341 (424)
+| .+.++. .....+.++|++-..++.......+.+.-+.+-|++ ..|.+.-.||.+.+|..+.
T Consensus 239 ~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 239 SPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 78 333333 346679999999999999888777777778887766 4788999999999998764
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=4.7e-10 Score=89.86 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=122.1
Q ss_pred CeEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecc--------eeecCCCccccCCCCceeEEEEECCCCc
Q 014475 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ--------RFLASSQLREQPSASSGSILYWSWSKPQ 72 (424)
Q Consensus 1 ~e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~l~~~~~~~g~i~vwd~~~~~ 72 (424)
||..|+++. .++.+......++.+....+. ....+...+.+. ..+..+..+++++.| |.+.+.+.+...
T Consensus 46 ~~~~lf~~e-~~~~~ss~g~~r~~~~~~~~r-t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d-g~~~v~s~~~~~ 122 (319)
T KOG4714|consen 46 AEYILFTGE-TSSQIISLGKGRGRCISLWER-DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD-GSLAVFSTDKDL 122 (319)
T ss_pred hhheeeccc-chhheeeeccceEEEechhhc-ccCcCceeeeeccCCCCCcccccccCCceEecCCC-ceEEEEechHHH
Confidence 567888888 888888777665554432211 112222222220 033456678888887 999999987622
Q ss_pred eeeee---cCCCCeeEEEECCCCCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCC
Q 014475 73 VEVKS---LPAEPIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSED 143 (424)
Q Consensus 73 ~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~d 143 (424)
..... .|.+ -.+.++...++.+.++.. -+..+.|+++..+....-......|.+++-+|. .+.+++|+.|
T Consensus 123 ~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~d 201 (319)
T KOG4714|consen 123 ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDD 201 (319)
T ss_pred hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCC
Confidence 11111 1111 112223334555554422 234667776544433322233445999999994 4567788899
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 208 (424)
|.+-+||.+.. ..+...+..|+.+|+.+.|+|... ..|+++++||.+..||..+
T Consensus 202 g~~~l~d~rn~----------~~p~S~l~ahk~~i~eV~FHpk~p-~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 202 GIVGLWDARNV----------AMPVSLLKAHKAEIWEVHFHPKNP-EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CeEEEEEcccc----------cchHHHHHHhhhhhhheeccCCCc-hheeEecCCCcEEEEcCCC
Confidence 99999999762 334566788999999999999876 8899999999999999765
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.21 E-value=5e-10 Score=89.69 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=119.7
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCccee------------eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
++.+.++.+ -.|+++..++.+......++.+. ..+..|.++-.+-..+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 34666666666655554433222 22223333222222233456799999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-----CCCcEEEEecCCCceeee-eecCcceeEE
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-----EDRTCKVWSLLKGRLLRN-IVFPSVIDAI 224 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-----~d~~v~iwd~~~~~~~~~-~~~~~~i~~~ 224 (424)
.+..... ..........-.+.+....+ +.+.++. .-+..+.|+++..+.+.. ......+.++
T Consensus 118 ~~~~~~~----------~~~i~~~~~~~as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 118 TDKDLAL----------MSRIPSIHSGSASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL 185 (319)
T ss_pred chHHHhh----------hhhcccccccccccceeecc--cEEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence 8652110 01111111111122222332 3333322 123456666654332222 1233459999
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCC
Q 014475 225 ALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 225 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~ 299 (424)
+-+| ....+++|+.||.+-+||.++.. .+...+..|+.+|..+-|+| +..|+++++||.+..||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999 45677889999999999999974 56778889999999999999 88999999999999999763
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.20 E-value=5.3e-08 Score=79.81 Aligned_cols=235 Identities=13% Similarity=0.075 Sum_probs=136.9
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEccCc--ceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 85 PIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.++.+++|+.||+. .|..|.|-..+.. ..+... +.....=..++|+||+..||.+...|+|++||+..... ..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EE
Confidence 35677899988875 5677877665443 222222 22223456799999999999999999999999964111 00
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCc----eeEEEEEeCCCcEEEEecCC-----Cceeeeee----cCcceeEEEE
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK-----GRLLRNIV----FPSVIDAIAL 226 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~----~~~~i~~~~~ 226 (424)
..... .....-...|..+.|.+... ...|++-..+|.++-|-+.. .+....+. .+..|.++.+
T Consensus 80 I~p~~----~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 80 IPPAM----SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred cCccc----ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 00000 00112245666666654320 14577777788888776532 22333333 4678999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe---cCCCEEEEeCCCCc------EEEEeC
Q 014475 227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY---STGDLLISGSEDGM------VRVWDP 297 (424)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~l~t~~~dg~------i~iwd~ 297 (424)
+|..++|++|+.... +.+. ..+....+++=.. .|--..++...|+. ..+|.+
T Consensus 156 ~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred cCCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 999999888875432 1100 0011122222111 11111122222221 234443
Q ss_pred CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
-+.+...........|..+..||||+.||+...+|.|.+|+++.-.+
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 33322222223456899999999999999999999999999986544
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=4.2e-11 Score=105.65 Aligned_cols=215 Identities=15% Similarity=0.219 Sum_probs=154.4
Q ss_pred eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 115 ~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 194 (424)
+..+.+|...|..+.--.+.+-+++++.|++|++|.++.... ......+..+++.|+.+|.++.|-.+. +.++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~- 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----EIGTSACQFTYQAHKKPIHDIGFLADL--RSIA- 800 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----ccccceeeeEhhhccCcccceeeeecc--ceee-
Confidence 456778999999988877888899999999999999965322 112334667888999999999998875 4554
Q ss_pred EeCCCcEEEEecCCCceeeeee---cCcceeEEEECC--CCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (424)
+.||.+.+||.--++++.... ..+.+..+..-| +...+++| +...+++++|.+...-... -.+....+.
T Consensus 801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E----~kVcna~~P 875 (1034)
T KOG4190|consen 801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE----LKVCNAPGP 875 (1034)
T ss_pred -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee----EEeccCCCC
Confidence 457899999998887776443 223333333333 44455555 6788999999988642111 112222345
Q ss_pred CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee-ccCCCC
Q 014475 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS-SRRHGS 342 (424)
Q Consensus 269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i-w~~~~~ 342 (424)
...+.+++..+ |+.++.+-.+|.|.+.|.++|+.+..++.-.-....++- |..+.|+....|.++.+ |....+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence 57789999999 999999999999999999999998887755444444433 55678888888888887 865543
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=8.7e-10 Score=90.62 Aligned_cols=258 Identities=18% Similarity=0.295 Sum_probs=169.8
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----eeeeecccc------------CCeEEEEEccCC--cEEEE
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS 139 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~i~~~~~~~~~--~~l~s 139 (424)
..+.|+++.|...|.|+++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999865432 223355553 357888887643 45777
Q ss_pred eeCCCcEEEEeCCcccchhc------------------------ccc--cccc-----eEEe-ecCCcCceeEEEEEEcC
Q 014475 140 GSEDGCVRIWSLLTVFEECE------------------------SQR--ASHL-----YLHS-FTGHTLRITDIVIGYGG 187 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~------------------------~~~--~~~~-----~~~~-~~~~~~~i~~~~~~~~~ 187 (424)
.+.|.+|++|.+........ ..+ .... +.+. ...|.-.|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999999865311000 000 0000 0111 14577788889888875
Q ss_pred ceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
..+++ ..|-.|.+|++.-......+. ....|++..|+|. ...+.-.+..|.|++-|++.........
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 45554 457789999987433222221 1246888999995 4566777889999999998543211110
Q ss_pred C-------ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC-cEEEEEeccCC------------Ce---
Q 014475 258 G-------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-NIVRMFRLAKG------------PV--- 313 (424)
Q Consensus 258 ~-------~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~------------~v--- 313 (424)
. .--..-+.+-...|..+.|++ |+++++-+. -+|+|||++.. .+++++..|.. .|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0 000111223346788899999 888877654 57999999864 57788765532 22
Q ss_pred eEEEEEecCceeeeccCCCceeeccCC
Q 014475 314 NNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
..+.|+-|.+.+++|+.....-++-..
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEEecCCcccccccccccceeeeccc
Confidence 357888899999999998887777643
No 293
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.13 E-value=6.5e-08 Score=82.38 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=136.5
Q ss_pred ceeEEEEECCCCceeeeecCCCCeeEEE--ECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 60 SGSILYWSWSKPQVEVKSLPAEPIKPIA--ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
+|.|..||..+++............... ..+++..+++++.++.|..||..+|+.+..... ...+..... ..+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccccc
Confidence 4899999999998887765432233333 333566777778899999999999998877754 222211122 235566
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 216 (424)
++++.++.+..+|..++...... ...... ............+ ..++.+..++.|..+|+++|+.+....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSI--------YLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEE--------EE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred ccccceeeeEecccCCcceeeee--------ccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEee
Confidence 77778889999998775432110 000000 0111122222234 678888889999999999999988776
Q ss_pred cCc-c----------eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475 217 FPS-V----------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS 285 (424)
Q Consensus 217 ~~~-~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t 285 (424)
... . +..-....++ .++++..++.+..+|+.++. .+-... ...+..+....+..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~---------~~w~~~--~~~~~~~~~~~~~~l~~ 217 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE---------KLWSKP--ISGIYSLPSVDGGTLYV 217 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---------EEEEEC--SS-ECECEECCCTEEEE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---------EEEEec--CCCccCCceeeCCEEEE
Confidence 322 1 1122222344 77777778864444998874 221111 22233322222777787
Q ss_pred eCCCCcEEEEeCCCCcEEEE
Q 014475 286 GSEDGMVRVWDPITHNIVRM 305 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~ 305 (424)
++.++.|..||+++|+.+.+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999987653
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.1e-07 Score=86.96 Aligned_cols=225 Identities=13% Similarity=0.035 Sum_probs=133.2
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCE-EEEecC---CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTY-IAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF 136 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 136 (424)
..|.+-|.+.......... +......|+|||+. ++..+. +..|+++|+.+++...... ..+......|+|||+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 5677777766554433333 37889999999985 554333 3569999998886554433 4455667889999987
Q ss_pred EEE-eeCC--CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCC--cEEEEecCCCc
Q 014475 137 LIS-GSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGR 210 (424)
Q Consensus 137 l~s-~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~~~ 210 (424)
++. .+.+ ..|.++|+.++. ...+..+........|+|++ +.|+..+ ..+ .|.+.|+.+++
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~------------~~~LT~~~~~d~~p~~SPDG--~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKT------------LTQITNYPGIDVNGNFVEDD--KRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCc------------EEEcccCCCccCccEECCCC--CEEEEEECCCCCceEEEEECCCCC
Confidence 664 3333 457777875421 12233333323345799998 5554444 334 57778888776
Q ss_pred eeeeeecCcceeEEEECCCCCEEEEEeCC---------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (424)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 280 (424)
..+....... ...|+|+|+.++..... ..|.+.|+..+.. + .+... .......|+| |
T Consensus 313 ~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~---~LT~~-~~~~~p~~SPDG 379 (419)
T PRK04043 313 VEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------R---RLTAN-GVNQFPRFSSDG 379 (419)
T ss_pred eEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------E---ECCCC-CCcCCeEECCCC
Confidence 5443322222 24899999988876643 2678888877541 1 22221 1223578999 7
Q ss_pred CEEEEeCCC-C--cEEEEeCCCCcEEEEEeccCCCeeE
Q 014475 281 DLLISGSED-G--MVRVWDPITHNIVRMFRLAKGPVNN 315 (424)
Q Consensus 281 ~~l~t~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (424)
+.++....+ + .+.+.++. |.....+....+.+..
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~ 416 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQS 416 (419)
T ss_pred CEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCC
Confidence 766655432 2 36666664 4444445444444443
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=1.2e-09 Score=99.74 Aligned_cols=226 Identities=18% Similarity=0.244 Sum_probs=163.5
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeec-cccCCeEEEEEccCC---cEEEEeeCCCcEEEEeCC
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWH-AHYRAVTCLVFSEDG---SFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~~~---~~l~s~~~dg~i~iwd~~ 152 (424)
.-.+++.++..+|.|+-+|.++.-| +.+.|+... ...+-+. ...-.|-.+.|+|.. ..+++.+ ...-.+|++.
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA 99 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA 99 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence 3467889999999999999998876 666777543 3222221 112346678888743 3444444 4466789986
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECCCC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAE 230 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~ 230 (424)
.. ........+.+|...|+++.|.+... ..+++++.|-.+..||+++... +.... -......+.|+-..
T Consensus 100 ~s--------s~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 100 KS--------SSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred cC--------CccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 52 23334556788999999999998876 8999999999999999987643 33333 45667889999876
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEE-EEEe
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIV-RMFR 307 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~-~~~~ 307 (424)
..+.+.+..+.|++||.+.+. .++..+++|...|+.+.|.. ...+.+.+.||+|++||......- ....
T Consensus 171 p~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred cchhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 677777888899999999986 77888899999999999988 778899999999999998754221 1122
Q ss_pred ccCCCeeEEEEEecC
Q 014475 308 LAKGPVNNILVVRRP 322 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~ 322 (424)
....+|+.-.+.|-|
T Consensus 243 tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFG 257 (1081)
T ss_pred cccCcceeccccccC
Confidence 234466666666643
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.09 E-value=9.2e-10 Score=93.61 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=110.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEec---CCCcEEEEEccCcceeeee
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGG---QSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~ 118 (424)
.++.++++|++..+ ....++++...... -...-...-+++.|..+......+. ....+.+|...++.. ..+
T Consensus 70 ~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~ 147 (390)
T KOG3914|consen 70 TSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPI 147 (390)
T ss_pred cCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chh
Confidence 77888998888776 67666666543321 1112233445555555555555443 444555665554433 344
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASE 197 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~ 197 (424)
-+|-+.++.++|+||+++++++..|..|++-.... ...+.. ..+|+.-|..++.-++ ..|++++.
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-----------~f~IesfclGH~eFVS~isl~~~---~~LlS~sG 213 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----------TFVIESFCLGHKEFVSTISLTDN---YLLLSGSG 213 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-----------ccchhhhccccHhheeeeeeccC---ceeeecCC
Confidence 57999999999999999999999999999987733 222222 3579999999999877 57999999
Q ss_pred CCcEEEEecCCCceeeeee
Q 014475 198 DRTCKVWSLLKGRLLRNIV 216 (424)
Q Consensus 198 d~~v~iwd~~~~~~~~~~~ 216 (424)
|+++++||+.+++.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999887665
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=2.9e-09 Score=87.65 Aligned_cols=210 Identities=16% Similarity=0.265 Sum_probs=144.9
Q ss_pred ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc------------CceeEEEEEEcCc
Q 014475 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT------------LRITDIVIGYGGV 188 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~ 188 (424)
....|+++.|...|.++++|...|+|.+|.-+.... + ..+....+++|. ..|..+.|..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-c-----eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-C-----EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccc-c-----chhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 345799999999999999999999999998755321 1 112222334443 4678888888776
Q ss_pred eeEEEEEeCCCcEEEEecCCCcee------------------------------------------eee--ecCcceeEE
Q 014475 189 SATIVSASEDRTCKVWSLLKGRLL------------------------------------------RNI--VFPSVIDAI 224 (424)
Q Consensus 189 ~~~l~~~~~d~~v~iwd~~~~~~~------------------------------------------~~~--~~~~~i~~~ 224 (424)
...++..+.|.+|++|.+...... +.. .|+..++++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 688889999999999987543100 000 144567888
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-----CcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST--GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~ 297 (424)
.+..+...++++ .|-+|.+|++.-..... .+...+.| ...|++..|+| .+.+.-.+..|.|++-|+
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sF------nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSF------NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCce------EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 888888777654 46689999987654321 12233333 34688999999 677777888999999999
Q ss_pred CCCcEE------E--E--------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 298 ITHNIV------R--M--------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 298 ~~~~~~------~--~--------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+...+. . + +..-...|..+.|+++|+++++-+. -++++||++..+.
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 843211 1 1 1122247889999999999988643 5799999986553
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=6.5e-10 Score=92.61 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=121.0
Q ss_pred ccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-----ceeeeeccccCCeEEE
Q 014475 54 EQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWHAHYRAVTCL 128 (424)
Q Consensus 54 ~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~i~~~ 128 (424)
++.|.+ ..|-+-|++++..... ...+.|.++.|...++++..|+.+|.|..+|++.+ .+...+ -|...|+++
T Consensus 228 fs~G~s-qqv~L~nvetg~~qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLS-QQVLLTNVETGHQQSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred eccccc-ceeEEEEeeccccccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 344444 6788888877654332 26788999999999999999999999999999865 233333 388999999
Q ss_pred EEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475 129 VFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (424)
Q Consensus 129 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~ 207 (424)
.... ++++|++.+.+|+|++||++... ...-+..+.+|...-.-+-+.-+.+...+++++.|-..+||.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K--------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATK--------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhh--------cccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 8876 78899999999999999997521 12236778888776666666555555889999999999999999
Q ss_pred CCceeeeeecCcc
Q 014475 208 KGRLLRNIVFPSV 220 (424)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (424)
.+.++.+++.+..
T Consensus 377 ~ghLl~tipf~~s 389 (425)
T KOG2695|consen 377 SGHLLCTIPFPYS 389 (425)
T ss_pred cCceeeccCCCCc
Confidence 9999998885543
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.4e-07 Score=84.84 Aligned_cols=214 Identities=14% Similarity=0.008 Sum_probs=129.7
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc-cccCCCC--ceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~~--~g~i~vwd~~~~~~~~~~~~~~~v~~~~~ 88 (424)
...|.+=|.. |...+.+... ....... |+|+|+. ++..+.. ...|.++|+.+++........+......|
T Consensus 168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~ 240 (419)
T PRK04043 168 KSNIVLADYT-LTYQKVIVKG----GLNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV 240 (419)
T ss_pred cceEEEECCC-CCceeEEccC----CCeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE
Confidence 3456665554 3334433321 1334445 9999985 5543322 36799999988877665556666778899
Q ss_pred CCCCCEEEEe-cC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC--cEEEEeCCcccchhcccc
Q 014475 89 NSHGTYIAGG-GQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQR 162 (424)
Q Consensus 89 s~~~~~l~~~-~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~ 162 (424)
+|||+.++.. +. +..|.++|+.+++.. .+..+........|+|||+.|+..+. .+ .|.+.|+.++..
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------ 313 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------ 313 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------
Confidence 9999877654 22 356888898777643 34333333345689999987776653 33 577777755321
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC---------CcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
..+ ...+. . ...|+|++ +.++..+.. ..|.+.|+.+++. ..+..........|+|+|+.+
T Consensus 314 ---~rl-t~~g~--~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I 382 (419)
T PRK04043 314 ---EQV-VFHGK--N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSI 382 (419)
T ss_pred ---EeC-ccCCC--c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEE
Confidence 011 11111 1 23799998 566555433 3678888887764 334333344468899999988
Q ss_pred EEEeCCC---cEEEEEcCCC
Q 014475 234 YAGSRDG---SIYIAALNAE 250 (424)
Q Consensus 234 ~~~~~dg---~i~i~d~~~~ 250 (424)
+.....+ .+.+.+++..
T Consensus 383 ~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEccCCcEEEEEEecCCC
Confidence 7665432 3566666553
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.06 E-value=1.3e-07 Score=77.59 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=133.9
Q ss_pred eecCCCccccCCCCceeEEEEECCCCc------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 119 (424)
.+.+|+.||+.-. ..|.+=..+..- ........-.=+.++||||+..||.+...|+|++||+.. ..+..+.
T Consensus 5 ~~~~Gk~lAi~qd--~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 5 LSSDGKLLAILQD--QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred ecCCCcEEEEEec--cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 4567777776654 466665544321 112222334567899999999999999999999999864 3333332
Q ss_pred c-------ccCCeEEEEEccC------CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEE
Q 014475 120 A-------HYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGY 185 (424)
Q Consensus 120 ~-------~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 185 (424)
. -...|..+.|.+. ...|++-..+|.++-|-+..+... .........+.. +...|.++.++|
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----GYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----cceeeEEEEecccCCCceeEEEEcC
Confidence 2 2356777777542 124666667788877765321100 011112223333 477899999999
Q ss_pred cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCE-E-EEEeCCC------cEEEEEcCCCCCCCCCc
Q 014475 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV-F-YAGSRDG------SIYIAALNAESPSTSSY 257 (424)
Q Consensus 186 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-l-~~~~~dg------~i~i~d~~~~~~~~~~~ 257 (424)
.. ++|+.|+.... +++. .......+++-..-.+..+ . ++...|+ +..+|.+-+.
T Consensus 158 ~h--~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------- 219 (282)
T PF15492_consen 158 KH--RLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------- 219 (282)
T ss_pred CC--CEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-------
Confidence 87 67666664322 0000 0001111221111111111 0 1111111 1122222211
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (424)
............|..|..+| +..||+...+|.|.+|++.+-++.+.+..++.
T Consensus 220 --~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 220 --KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred --eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 11111223467899999999 99999999999999999999888887765443
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3e-09 Score=91.83 Aligned_cols=221 Identities=17% Similarity=0.187 Sum_probs=163.1
Q ss_pred ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC
Q 014475 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR 199 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~ 199 (424)
|...|+.+.-. -.+++++++.||.++.|.-.. ......+..+..|...|.+++.+.++ ..+.+.+. |.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------ISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDH 76 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------ccceeehhhhHHHHHHHHhhhccccc--eeEeeccCccc
Confidence 77777776654 567999999999999997632 02233556677899999999999998 78888777 99
Q ss_pred cEEEEecCCCceeeeeecCcceeEEEECCC-C---CEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPA-E---HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (424)
Q Consensus 200 ~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~---~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (424)
.++++|+.+-..+.-+........++|... | ..++++ -.++.+.++|-..... +....-.-|..+|..
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKK 149 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEE
Confidence 999999988776655553333333344322 2 134443 4678999999877642 233344458999999
Q ss_pred EEecC-CCEEEEeCCCCcEEEEeCCC------CcEE---------EEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 275 LAYST-GDLLISGSEDGMVRVWDPIT------HNIV---------RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 275 ~~~~~-~~~l~t~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
+.+.+ ++.+++....|.|.-|.... .+.. ..+.......+++.|+|++..+.+-+.|..|+++.
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 99999 99999999999999999772 1111 12223445788999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccccc
Q 014475 339 RHGSQLPPPLDKYVTSADEDV 359 (424)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~ 359 (424)
..++++.+.+++.........
T Consensus 230 ~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 230 FKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred eccchhhhhhhccchhhhhcc
Confidence 999999888877766555443
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.3e-09 Score=91.59 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=170.4
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--c-ceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLT 153 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~ 153 (424)
.|.+.|+.+... -.+++.+++.||.++.|.-.. + +.+..+..|...|.+++.+-++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 466667666554 457899999999999998543 1 345566789999999999999999999777 99999999966
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCcee-eeee--cCcceeEEEECCC
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPA 229 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~ 229 (424)
..-. ....+.--.+.+..+ .++. .....-++.-.++.+.++|-....+. ..+. |..+|.++.+.|.
T Consensus 86 ~Dmi---------nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 86 FDMI---------NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred cchh---------hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 2211 011111111221111 1111 10022233345788999997654422 2222 8899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCC---CcC---ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTS---SYG---MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~---~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
+..+++....|.|.-|.....-+... ... -..+..+........++.|+| +..+.+-+.|..|++++.++|+.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 99999999999999999874111000 000 111222333456788999999 99999999999999999999887
Q ss_pred EEEEe--------------------------------ccC-CCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 303 VRMFR--------------------------------LAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 303 ~~~~~--------------------------------~~~-~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
++.+. .|. ..-+.+.|...|++|+-|+-=| |++.++.++..
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 66543 121 1446778888999998876554 66666666554
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=1e-06 Score=74.64 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=154.8
Q ss_pred CCeeEEEECC-CCCEEEEecCCCc-EEEEEccCcceeeeeccccCCe--EEEEEccCCcEEEEeeC-----CCcEEEEeC
Q 014475 81 EPIKPIAANS-HGTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSE-----DGCVRIWSL 151 (424)
Q Consensus 81 ~~v~~~~~s~-~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~-----dg~i~iwd~ 151 (424)
.....++.+| .+..++.+-.-|. ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4456788899 5667777777665 8899999998887765433221 24789999999998644 578999999
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe------------------CCCcEEEEecCCCceee
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------EDRTCKVWSLLKGRLLR 213 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------------------~d~~v~iwd~~~~~~~~ 213 (424)
.. ....+..+..|.-.-..+.+.|++ ..|+.+. .+-.+...|..+|+.+.
T Consensus 85 ~~----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 85 AR----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred cC----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 63 344566677777777778888887 4555432 23457777888888887
Q ss_pred eee-----cCcceeEEEECCCCCEEEEEeCCC-------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C
Q 014475 214 NIV-----FPSVIDAIALDPAEHVFYAGSRDG-------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (424)
Q Consensus 214 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 280 (424)
... +...+..+++.++|..++..-..| .+.+++......... -.......-...+-+|++++ +
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~----~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP----APEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc----CChHHHHhhCCceEEEEEeCCC
Confidence 744 445799999999988776654433 233333332110000 00011223457789999999 6
Q ss_pred CEEEEe-CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475 281 DLLISG-SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (424)
Q Consensus 281 ~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 330 (424)
.++++. -..+.+.+||..+++.+...... .+..++..+++ ++++.+.
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC
Confidence 666544 47889999999999998887643 45677777776 6666544
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.02 E-value=6.9e-08 Score=82.21 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=135.6
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~ 91 (424)
+|+|..||..+|+.+-+...... .....+. ..+++..++++..+ +.|..||..+++........+++...... +
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~---~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVAT---AVPDGGRVYVASGD-GNLYALDAKTGKVLWRFDLPGPISGAPVV-D 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEET---EEEETTEEEEEETT-SEEEEEETTTSEEEEEEECSSCGGSGEEE-E
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccce---EEEeCCEEEEEcCC-CEEEEEECCCCCEEEEeeccccccceeee-c
Confidence 78999999999999988754221 2222221 23355666666555 99999999999888776655544333222 3
Q ss_pred CCEEEEecCCCcEEEEEccCcceeeee-cccc---CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475 92 GTYIAGGGQSGDIYMWEVASGRLLKKW-HAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 92 ~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
+..+++++.++.++.+|..+|+.+... .... ...........++.++.+..++.|..+|++++.............
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 455666667889999999999988874 3221 112223333347788888889999999998754322111100000
Q ss_pred EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (424)
...+. ....+..-....+ ..++.++.++.+.-+|+.+++.+.... ...+... ..+.+..+++++.++.+..||+
T Consensus 156 ~~~~~-~~~~~~~~~~~~~---~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPIS-SFSDINGSPVISD---GRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EE-EETTEEEEEECCT---TEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred Cccee-eecccccceEEEC---CEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 00000 0001111111112 356666666754444999998665333 3333331 3457778888889999999999
Q ss_pred CCCC
Q 014475 248 NAES 251 (424)
Q Consensus 248 ~~~~ 251 (424)
.+++
T Consensus 230 ~tG~ 233 (238)
T PF13360_consen 230 KTGK 233 (238)
T ss_dssp TTTE
T ss_pred CCCC
Confidence 9974
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=2e-09 Score=89.75 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=118.0
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-----cee
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-----RLL 212 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~ 212 (424)
++.+.+-.+-+-|++++.. +.+. .++.|.++.|...+ +.++.|+..|.|..+|++.+ .+.
T Consensus 228 fs~G~sqqv~L~nvetg~~------------qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ------------QSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred ecccccceeEEEEeecccc------------cccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcce
Confidence 4455566788888876421 1222 56678888888766 89999999999999999864 567
Q ss_pred eeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE--ecC-CCEEEEeCC
Q 014475 213 RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA--YST-GDLLISGSE 288 (424)
Q Consensus 213 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~-~~~l~t~~~ 288 (424)
..+.|+..|+++..-. ++.+|++.+.+|+|.+||++..+.. .-+....+|...-.-+- ..+ ...+++++.
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc------cceeeeecccccccccccccccccceEEEccC
Confidence 7788999999999887 8999999999999999999986421 23677778865444433 345 778899999
Q ss_pred CCcEEEEeCCCCcEEEEEecc
Q 014475 289 DGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~ 309 (424)
|...|||.+++|.++.+++..
T Consensus 367 DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeEEEEEecccCceeeccCCC
Confidence 999999999999999988743
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.8e-07 Score=86.35 Aligned_cols=221 Identities=18% Similarity=0.202 Sum_probs=147.2
Q ss_pred EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC-eEEEEEccCCcEEEEeeCCCc-----EEEEeCCcccchhcc
Q 014475 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA-VTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECES 160 (424)
Q Consensus 87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~ 160 (424)
+|++.+..++.|+.+|.|.+.+ ++-+.++.++.+... |..+....+.++|++.+.|+. +++|+++.....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n--- 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN--- 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC---
Confidence 4678889999999999999987 344555778777776 444444444467888777654 899999764321
Q ss_pred cccccceE--Eeec-----CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC---CC--ceeeeeecCcceeEEEECC
Q 014475 161 QRASHLYL--HSFT-----GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KG--RLLRNIVFPSVIDAIALDP 228 (424)
Q Consensus 161 ~~~~~~~~--~~~~-----~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~---~~--~~~~~~~~~~~i~~~~~~~ 228 (424)
..+.++ .... ....++.+++++.+- +.+++|-.+|.|..+.-+ .. +.........+|+.+++..
T Consensus 106 --~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 106 --NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred --CCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 112222 1222 245678889999886 899999999999988522 11 1122223568999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
++..++-......|.+|.+.... .....+..|...+.|..+++ ...+++++. .-+.+|+.....+...+.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 88773333334578999998542 23455777889999999999 443666654 459999988777767776
Q ss_pred -ccCCCeeEEEEEecCceeee
Q 014475 308 -LAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 308 -~~~~~v~~l~~s~~~~~l~~ 327 (424)
+|.. -+.|...|..|+.
T Consensus 253 ~g~kk---~~~~~~~g~~L~v 270 (933)
T KOG2114|consen 253 VGEKK---EMLVFSFGLLLCV 270 (933)
T ss_pred CCCeE---EEEEEecCEEEEE
Confidence 5543 2333333444443
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2e-06 Score=73.45 Aligned_cols=211 Identities=16% Similarity=0.129 Sum_probs=135.3
Q ss_pred eec-CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEEC-CCCCEEEEecCCCcEEEEEccCcceeeeecc---
Q 014475 46 FLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAAN-SHGTYIAGGGQSGDIYMWEVASGRLLKKWHA--- 120 (424)
Q Consensus 46 ~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--- 120 (424)
|.+ ++.++++-... +.|..|+..+++........ ...+++. +++.++++ ... .+.++|+.+++.......
T Consensus 7 ~d~~~g~l~~~D~~~-~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPG-GRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EETTTTEEEEEETTT-TEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETT
T ss_pred EECCCCEEEEEEcCC-CEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCC
Confidence 776 55555554444 99999999887765543333 7777777 67655555 444 466669988855433332
Q ss_pred --ccCCeEEEEEccCCcEEEEeeCC--------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 121 --HYRAVTCLVFSEDGSFLISGSED--------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 121 --~~~~i~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
.....+.+++.|+|++.++.... |.|..++... .+......-...+.++|++++ +
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-------------~~~~~~~~~~~pNGi~~s~dg--~ 146 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-------------KVTVVADGLGFPNGIAFSPDG--K 146 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-------------EEEEEEEEESSEEEEEEETTS--S
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-------------eEEEEecCcccccceEECCcc--h
Confidence 34568899999999977776543 4566666631 122222234456889999998 5
Q ss_pred EE-EEEeCCCcEEEEecCCCce----eeee-e--cC-cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475 191 TI-VSASEDRTCKVWSLLKGRL----LRNI-V--FP-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (424)
Q Consensus 191 ~l-~~~~~d~~v~iwd~~~~~~----~~~~-~--~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (424)
.| ++-+..+.|..+++..... ...+ . .. +..-.+++..+|++.++....+.|.+++.+. +.
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G----------~~ 216 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG----------KL 216 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS----------CE
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc----------cE
Confidence 54 5667788899999863222 1122 1 11 2478899999999888888899999999884 34
Q ss_pred eeeecccCcCeEEEEec-C--CCEEEEe
Q 014475 262 IGSLSDHSKAVTCLAYS-T--GDLLISG 286 (424)
Q Consensus 262 ~~~~~~~~~~i~~~~~~-~--~~~l~t~ 286 (424)
+..+......+++++|. + +.+++|.
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 44444444588999994 3 4455544
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=5.4e-07 Score=82.74 Aligned_cols=254 Identities=12% Similarity=0.076 Sum_probs=152.2
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
.++.++ .+|.+.-+|.++|+.+-+.+... .+.+-. ...++. ++++..+ |.+..+|.++++..+......+.
T Consensus 122 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~~----~~~ssP--~v~~~~-v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 122 KVYIGS-EKGQVYALNAEDGEVAWQTKVAG----EALSRP--VVSDGL-VLVHTSN-GMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred EEEEEc-CCCEEEEEECCCCCCcccccCCC----ceecCC--EEECCE-EEEECCC-CEEEEEEccCCCEeeeecCCCCc
Confidence 345566 78999999999999887665332 122211 222444 4445555 89999999999887765433221
Q ss_pred eEE--EECC--CCCEEEEecCCCcEEEEEccCcceeeeeccccC-------CeEEEEEcc--CCcEEEEeeCCCcEEEEe
Q 014475 84 KPI--AANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSE--DGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 84 ~~~--~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~l~s~~~dg~i~iwd 150 (424)
..+ .-+| .+..++.++.+|.+..+|.++|+.+...+.... ....+.-+| .+..++.++.+|.+..+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 111 0122 233566677889999999999987655431110 011111222 245677777899999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-C-cceeEEEECC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVIDAIALDP 228 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~i~~~~~~~ 228 (424)
..++....+ ..+. ....+. ..+ ..++.++.+|.+..+|..+++.+..... . ....+...
T Consensus 273 ~~tG~~~W~---------~~~~----~~~~~~--~~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-- 333 (394)
T PRK11138 273 LRSGQIVWK---------REYG----SVNDFA--VDG--GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-- 333 (394)
T ss_pred CCCCCEEEe---------ecCC----CccCcE--EEC--CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence 977532211 1111 111122 223 5777788899999999999987654431 1 11111111
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeC
Q 014475 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~ 297 (424)
.+..+++++.+|.++..|..+++ .+....-....+.+ +| ++.|+.++.||.|..++.
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s---~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLS---EPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCccee---CCEEECCEEEEEeCCceEEEEeC
Confidence 36678889999999999998874 23333222222221 23 678888999999988764
No 309
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.89 E-value=5e-06 Score=78.30 Aligned_cols=287 Identities=16% Similarity=0.185 Sum_probs=159.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCC---CceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeecC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP---HGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP 79 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~ 79 (424)
.+..++ .++.|.-.|.++|+.+-+++...... ..+..-. ... ++..++.+..+ |.|.-+|.++++...+...
T Consensus 63 ~vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g--~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 63 DMYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG--VAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EEEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCC--cEEccCCeEEEecCC-CeEEEEECCCCCEeeeecC
Confidence 455666 78999999999999887665432200 0011000 111 22556666665 9999999999998877654
Q ss_pred CCCe---eEEEECC--CCCEEEEec---------CCCcEEEEEccCcceeeeeccccCC--------------------e
Q 014475 80 AEPI---KPIAANS--HGTYIAGGG---------QSGDIYMWEVASGRLLKKWHAHYRA--------------------V 125 (424)
Q Consensus 80 ~~~v---~~~~~s~--~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~--------------------i 125 (424)
...+ ..+.-+| .+..++.++ .+|.+..+|..+|+.+..++..... +
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 3331 1111122 124455553 3678999999999888766432110 1
Q ss_pred -EEEEEccCCcEEEEeeCCC------------------cEEEEeCCcccchhcccccccceEEeecCCcCce-eEEEEEE
Q 014475 126 -TCLVFSEDGSFLISGSEDG------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGY 185 (424)
Q Consensus 126 -~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 185 (424)
....+.+.+..++.++.++ .|.-+|..++...-....... ....+.....++ ..+. .-
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~~~~s~p~~~~~~-~~ 296 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-DLWDYDGPNQPSLADIK-PK 296 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-CCcccccCCCCeEEecc-cc
Confidence 1234444456777776665 688888877543222110000 000001111111 0110 01
Q ss_pred cCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE------------------eCCCcEEEEE
Q 014475 186 GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG------------------SRDGSIYIAA 246 (424)
Q Consensus 186 ~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d 246 (424)
++. ...++.++.+|.+...|.++|+.+...... ...+..+| ..++++ ..+|.+.-.|
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 121 136788889999999999999988876532 11233344 333332 2356777788
Q ss_pred cCCCCCCCCCcCceeeeeecccC------cCe--EEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 247 LNAESPSTSSYGMHIIGSLSDHS------KAV--TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~------~~i--~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
..+++...... ...+. .+. ..+... ++.++.++.||.|+.+|.++|+.+.+++.
T Consensus 373 ~~tG~~~W~~~-------~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 373 PKTGKVVWEKR-------EGTIRDSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCcEeeEee-------CCccccccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 87775322110 10000 111 112222 67888999999999999999999998875
No 310
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=8.3e-08 Score=89.54 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=84.8
Q ss_pred eecCCCccccCCC---CceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475 46 FLASSQLREQPSA---SSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (424)
Q Consensus 46 ~~~~~~~l~~~~~---~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 122 (424)
|+|...++++++- ..|.|.|+- +++++.....-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.......|.
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~ 101 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP 101 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC
Confidence 7788777776642 238888885 344433222234456789999999999999999999999988777766677899
Q ss_pred CCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
.+|..+.|+++|..++++..-|.+.+|...
T Consensus 102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999999875
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=7.2e-08 Score=90.62 Aligned_cols=184 Identities=20% Similarity=0.307 Sum_probs=140.9
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
++..++.|+....+..+|+++.+..+......+.|.-++. +++.+.+|...|+|.+-|.+ ....+++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~-----------s~~~iht 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPN-----------SFETIHT 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCC-----------cCceeee
Confidence 3456777777778999999998888777655555666665 58899999999999999994 4667899
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeC---------CCcEEEEecCCCceeeeeecCcceeEEEECCC-CCEEEEEeCCC
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASE---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-EHVFYAGSRDG 240 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 240 (424)
+..|.+.|.++.. .| +.|++++. |..|++||++..+.+..+..+....-+.|+|. ...+++.+..|
T Consensus 213 ~~aHs~siSDfDv--~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 213 FDAHSGSISDFDV--QG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred eeccccceeeeec--cC--CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc
Confidence 9999999987655 34 67888775 56789999999888888876666677888884 56788899999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
...+-|..+-.... .-+.........+..+.+++ ++.++.|..+|.|.+|.
T Consensus 289 q~q~vd~~~lsNP~-----~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPP-----AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCc-----cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99999843322100 11222223345589999999 99999999999999998
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.86 E-value=1.4e-06 Score=84.85 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=150.1
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc----cC-
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----AS- 111 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~----~~- 111 (424)
..|.++. |..+...++.+... |.|.+-|.++........-...|.+++||||+..++..+..+++.+-.- -.
T Consensus 69 ~~i~s~~--fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQ--FLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEE--EecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 5677777 99999888888887 9999999888888777778899999999999999999888777766432 00
Q ss_pred ------------------cceeeeeccc---------------------cCCeEEEEEccCCcEEEEe-----eCCCcEE
Q 014475 112 ------------------GRLLKKWHAH---------------------YRAVTCLVFSEDGSFLISG-----SEDGCVR 147 (424)
Q Consensus 112 ------------------~~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~s~-----~~dg~i~ 147 (424)
|+....+++. .+.=+.++|--||+++++. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 0111112110 1112358999999999873 2237899
Q ss_pred EEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCceeeee----ecC-c
Q 014475 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNI----VFP-S 219 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~----~~~-~ 219 (424)
+||-+. .-. ..-....+.-.+++|-|.| ..+++-. .|+.|.++.- +|-....+ ..+ .
T Consensus 226 V~drEg-~Ln-----------s~se~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 226 VYDREG-ALN-----------STSEPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred Eecccc-hhh-----------cccCcccccccceeecCCC--CeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence 999852 110 0111122233467888877 6776543 4557888874 34333333 222 3
Q ss_pred ceeEEEECCCCCEEEE---EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEE
Q 014475 220 VIDAIALDPAEHVFYA---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRV 294 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~i 294 (424)
.+..++|+.++..|++ ......|++|-+.+-. |-..+.+.-..... +.|+| ...+..-..+|...+
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-------WYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-------WYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE-------EEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 3899999999999988 4444559999998754 33333333322222 77888 333333335666555
Q ss_pred EeC
Q 014475 295 WDP 297 (424)
Q Consensus 295 wd~ 297 (424)
+|.
T Consensus 362 ~~~ 364 (1265)
T KOG1920|consen 362 RDF 364 (1265)
T ss_pred EEE
Confidence 553
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=5.8e-09 Score=60.46 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=37.1
Q ss_pred CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=9e-06 Score=69.08 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=138.9
Q ss_pred eec-CCCccccCCCCceeEEEEECCCCceeeeecCCC---CeeEEEECCCCCEEEEec-----CCCcEEEEEcc-Cccee
Q 014475 46 FLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYIAGGG-----QSGDIYMWEVA-SGRLL 115 (424)
Q Consensus 46 ~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~-----~dg~v~iwd~~-~~~~~ 115 (424)
.+| ....++.+-.-.....+||..+++......... ---.-.||+||++|++.- ..|.|-|||.. +.+.+
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri 91 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI 91 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence 666 344444554444578899998887664433221 122567999999999863 35789999998 66778
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeC-------CCcEEEEeCCcccchhccc-ccccceEE--ee--cCCcCceeEEEE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECESQ-RASHLYLH--SF--TGHTLRITDIVI 183 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~-~~~~~~~~--~~--~~~~~~i~~~~~ 183 (424)
.++..|.-....+.+.||++.|+++-. .|..++ |+.++....... ......+. .+ .-|...|..+++
T Consensus 92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 888888877888999999988877621 122222 333322211111 12222222 23 347788999999
Q ss_pred EEcCceeEEEEEeCCC-------cEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEEEe-CCCcEEEEEc
Q 014475 184 GYGGVSATIVSASEDR-------TCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGS-RDGSIYIAAL 247 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~ 247 (424)
..++ ..++..-..| .|-+++. ++.+..+. ....+-+|++++++..+++.+ ..+.+.+||.
T Consensus 171 ~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 171 DGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred cCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 8886 3433332222 1333332 33233222 346789999999998887665 5678999999
Q ss_pred CCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d 289 (424)
.++. .+... .-..+..++..++.++++.+..
T Consensus 247 ~tg~---------~~~~~--~l~D~cGva~~~~~f~~ssG~G 277 (305)
T PF07433_consen 247 ATGR---------LLGSV--PLPDACGVAPTDDGFLVSSGQG 277 (305)
T ss_pred CCCC---------Eeecc--ccCceeeeeecCCceEEeCCCc
Confidence 9874 22222 2234566666665566666543
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.8e-09 Score=99.44 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=148.4
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFE 156 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~ 156 (424)
+....+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.+.-+.+|..+++.+.-. -..+|++...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-- 1177 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-- 1177 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc--
Confidence 567889999999999999999999999999999999999999999999999999998887765543 3678998541
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----cCcceeEEEECCCCC
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEH 231 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~ 231 (424)
....+.+. .-.++.|+... ..-+.|+......+||+.++.++.++- ....-++..|+|+..
T Consensus 1178 --------~~~~Hsf~----ed~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1178 --------GGPRHSFD----EDKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred --------cCcccccc----ccceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 12223332 23456676654 344555555679999999998777632 223347888999988
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (424)
+++ +|| .+||.+... .+..+......+ .=.|+| |..++.-++ |||+++.+.++....-.
T Consensus 1244 LIl---ndG--vLWDvR~~~---------aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1244 LIL---NDG--VLWDVRIPE---------AIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred eEe---eCc--eeeeeccHH---------HHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 776 344 579998863 233332222111 124788 887777664 89999988887765322
Q ss_pred CCeeEEEEEecCceee
Q 014475 311 GPVNNILVVRRPLYLN 326 (424)
Q Consensus 311 ~~v~~l~~s~~~~~l~ 326 (424)
-..+.|+..|..+.
T Consensus 1304 --qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1304 --QCAVTFNSTGDVMY 1317 (1516)
T ss_pred --ceEEEeccCccchh
Confidence 25566776665543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.8e-07 Score=78.08 Aligned_cols=243 Identities=11% Similarity=0.083 Sum_probs=141.7
Q ss_pred eecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCc
Q 014475 76 KSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~ 153 (424)
...+...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. +++..|..+|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 344567899999999766 7888899999999999999999888877 789999998755 4567778899999999987
Q ss_pred ccchhcccccccceEEeecCCcCceeEE------EEEEcCceeEEEEEeCCCcEEEEecCC----CceeeeeecCcceeE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDI------VIGYGGVSATIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDA 223 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~i~~ 223 (424)
.......... .-...+|..+ ...+.+ .+++....+ +..|++.- ..++..+..++...+
T Consensus 268 ~~~~~~e~~a--------~~t~~pv~~i~~~~~n~~f~~g--glLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cis 335 (463)
T KOG1645|consen 268 PEGPLMELVA--------NVTINPVHKIAPVQPNKIFTSG--GLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICIS 335 (463)
T ss_pred CCchHhhhhh--------hhccCcceeecccCcccccccc--ceEEeeehh--hhhhhhhccccCCCcccccCCCcceee
Confidence 4332211110 0011122222 222333 344444433 55666532 223334445667777
Q ss_pred EEECCCCCEEEEEeCCC----cEE---E-EEcCCCCCCCCCcCceeeeeeccc-CcC---e--EEEEec-C-CCEE-EEe
Q 014475 224 IALDPAEHVFYAGSRDG----SIY---I-AALNAESPSTSSYGMHIIGSLSDH-SKA---V--TCLAYS-T-GDLL-ISG 286 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg----~i~---i-~d~~~~~~~~~~~~~~~~~~~~~~-~~~---i--~~~~~~-~-~~~l-~t~ 286 (424)
++.++..+.++...... .++ . -|...+. .....-..+ ..+ + +..-+. + .+++ .++
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--------pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--------PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccCc--------eeeeecccccCCcccccccccceeccccccEEEEec
Confidence 77777555554443221 011 1 0111111 111111111 000 0 011122 2 3444 445
Q ss_pred CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCC
Q 014475 287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~ 340 (424)
+.-+.+.+||+.+++.++++.. ..+|..++... ++.-++..-.|..++|++.+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEecC
Confidence 5667899999999999999974 47888887664 34433344456667777644
No 317
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.82 E-value=7.5e-06 Score=73.86 Aligned_cols=259 Identities=13% Similarity=0.115 Sum_probs=140.9
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-cc---------------c-cC
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HA---------------H-YR 123 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~---------------~-~~ 123 (424)
+.+.++|+++++..........+....|||+|+.+|... ++.|.+++..++...+.- .+ - -+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 789999999977655444467899999999999999875 578999998777443322 11 0 12
Q ss_pred CeEEEEEccCCcEEEEeeCC-CcEEEEeCCcccch------hcc-------c-------------ccccceEEee---cC
Q 014475 124 AVTCLVFSEDGSFLISGSED-GCVRIWSLLTVFEE------CES-------Q-------------RASHLYLHSF---TG 173 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~------~~~-------~-------------~~~~~~~~~~---~~ 173 (424)
.-..+-|+||+++|+....| ..|..+.+...... ... . ..+...+... ..
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence 33568899999998876543 33333332111000 000 0 0000011111 22
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeee--cCcc---eeEEEEC-CCC-CEEEEEeCCCcEE
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIV--FPSV---IDAIALD-PAE-HVFYAGSRDGSIY 243 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~--~~~~---i~~~~~~-~~~-~~l~~~~~dg~i~ 243 (424)
...-+..+.|.+++..-.+.....+. .+.++|..+++...... .+.. .....+. +++ .++.....+|--+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 34457778888887211223333333 36677887765543333 2222 2355554 544 5555566777555
Q ss_pred EEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecC--CCEEEEeCCCC----cEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST--GDLLISGSEDG----MVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~--~~~l~t~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
+|-++... .....+....-.|+. +.+++ +.++.++..++ .|..-++..+..+..+....+.-..+
T Consensus 262 ly~~~~~~--------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 262 LYLYDLDG--------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp EEEEETTS--------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEE
T ss_pred EEEEcccc--------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEE
Confidence 54444332 223345445566755 56677 44555665432 45555666345566666544444699
Q ss_pred EEEecCceeeec
Q 014475 317 LVVRRPLYLNLG 328 (424)
Q Consensus 317 ~~s~~~~~l~~~ 328 (424)
.|||++++++..
T Consensus 334 ~~Spdg~y~v~~ 345 (353)
T PF00930_consen 334 SFSPDGKYYVDT 345 (353)
T ss_dssp EE-TTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 999999988754
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.81 E-value=1.5e-08 Score=58.65 Aligned_cols=39 Identities=36% Similarity=0.888 Sum_probs=36.6
Q ss_pred cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
++++.++++|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999999999999999997
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.80 E-value=1.3e-05 Score=74.53 Aligned_cols=304 Identities=10% Similarity=0.004 Sum_probs=169.5
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCC----------CceE---------------Eecc---eeecCCCcccc
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP----------HGLA---------------CVGQ---RFLASSQLREQ 55 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~v~---------------~~~~---~~~~~~~~l~~ 55 (424)
.+.||+ ..|.|+|+-+.+++.++.+.-..... ..+. .... .=..||+++..
T Consensus 68 ~f~SgG-~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fi 146 (635)
T PRK02888 68 GFWSGG-HSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFI 146 (635)
T ss_pred EEeeCC-ccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEE
Confidence 467788 99999999999999998775322100 0010 0000 00124455554
Q ss_pred CCCCceeEEEEECCCCcee--eeecCCCCeeEEE-------------------ECCCCCEEEEe-cCCCcEEEEEccCcc
Q 014475 56 PSASSGSILYWSWSKPQVE--VKSLPAEPIKPIA-------------------ANSHGTYIAGG-GQSGDIYMWEVASGR 113 (424)
Q Consensus 56 ~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~-------------------~s~~~~~l~~~-~~dg~v~iwd~~~~~ 113 (424)
-......|-.-+++..+.. ........+..++ ++|||+.+... -..+.+.+.|.++.+
T Consensus 147 ndk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etme 226 (635)
T PRK02888 147 NDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETME 226 (635)
T ss_pred ecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccce
Confidence 4433344444444432211 1111122233333 34455444222 223557777877766
Q ss_pred eeeeeccccCCeEEEEEccCCcEEEEeeCCC----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
...++.... ....+.++|+++++++.+.+. .+..-+..+ ...+..+.... +. .+.+++
T Consensus 227 V~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-----------~d~~vvfni~~--ie--a~vkdG-- 288 (635)
T PRK02888 227 VAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-----------RDWVVVFNIAR--IE--EAVKAG-- 288 (635)
T ss_pred EEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc-----------CceEEEEchHH--HH--HhhhCC--
Confidence 666654332 446788899999888776321 222222211 11111111100 00 223344
Q ss_pred eEEEEEeCCCcEEEEecCC-----CceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCC---CcCce
Q 014475 190 ATIVSASEDRTCKVWSLLK-----GRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTS---SYGMH 260 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---~~~~~ 260 (424)
++... .++.|.+.|.++ .+.+..+..+.....+.++|||+++++++ .+.++.++|+........ .....
T Consensus 289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 44333 367899999998 56777788888999999999999988766 488999999988542110 00111
Q ss_pred eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----------CcEEEEEeccCCCeeEE-----EEEecCce
Q 014475 261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFRLAKGPVNNI-----LVVRRPLY 324 (424)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l-----~~s~~~~~ 324 (424)
.+.+..- .......+|.+ |+.+.|-.-|..|..||+.+ ...+..+..|-.+-... .-.|||++
T Consensus 367 vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~ 445 (635)
T PRK02888 367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW 445 (635)
T ss_pred EEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence 2233332 23334567888 88888888999999999886 34555555554432222 23588999
Q ss_pred eeecc
Q 014475 325 LNLGS 329 (424)
Q Consensus 325 l~~~~ 329 (424)
|++..
T Consensus 446 l~~~n 450 (635)
T PRK02888 446 LVSLN 450 (635)
T ss_pred EEEcc
Confidence 88864
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7.4e-08 Score=89.40 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=136.3
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
...++|++++ +++|+-|+.+|.|++++... . + .....|... +..|.++++|+.||+|
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-----------~-~-~~~~~~s~~--------~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-----------N-P-KTNFDHSSS--------ILEGEYVASCSDDGKV 95 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-----------c-c-ccccccccc--------ccCCceEEEecCCCcE
Confidence 3567778887 77999999999999999843 1 1 222334333 3334999999999999
Q ss_pred EEEecCCCceeeeeecCcceeEEEECCC-----CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475 202 KVWSLLKGRLLRNIVFPSVIDAIALDPA-----EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (424)
Q Consensus 202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (424)
.|-.+.+.+....+....++.+++++|+ .+.+++|+..| +.++.-+--.. +....+....++|.++.
T Consensus 96 ~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIK 167 (846)
T ss_pred EEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEE
Confidence 9999999999999999999999999997 57799999888 77776543221 11124556779999999
Q ss_pred ecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe------eEEEEEecCceeeeccCCCceeeccCC
Q 014475 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV------NNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 277 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|. |+++|-++.+| |++||+.+++.+..++.....+ ..+.|.++. .|+.| ...+|++..++
T Consensus 168 W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 WR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred ec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 97 89999998887 8999999999888877544332 457777665 44444 34456666665
No 321
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=1.8e-05 Score=64.26 Aligned_cols=305 Identities=13% Similarity=0.069 Sum_probs=167.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.+++.|+ -.+.+.--|..+|+..-+-.. . .++.+-+ .. -|+.++.+... |.+++-+..+++..+.....+.
T Consensus 24 T~v~igS-Hs~~~~avd~~sG~~~We~il-g---~RiE~sa--~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 24 TLVVIGS-HSGIVIAVDPQSGNLIWEAIL-G---VRIECSA--IV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred eEEEEec-CCceEEEecCCCCcEEeehhh-C---ceeeeee--EE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhh
Confidence 4567777 788888889888887744211 1 2233322 22 45668888887 9999999999987777665555
Q ss_pred eeEE-EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 83 IKPI-AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 83 v~~~-~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
|.+- ...+++..+..|+.|++.+..|.++..++...+...+...+-+..|-...|..+...|.+.--+.++...
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~----- 169 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS----- 169 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc-----
Confidence 5433 3567899999999999999999999998888765555444455556333455555566665555533110
Q ss_pred ccccceEEeecCCcCceeE--EEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeE-EEEC-CCCCEEEEEe
Q 014475 162 RASHLYLHSFTGHTLRITD--IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDA-IALD-PAEHVFYAGS 237 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~-~~~~-~~~~~l~~~~ 237 (424)
..+. .....++|.+ ++.. ..+..++-||.+.-+| ..|+.+......++|.. -+.+ |..+.+..+.
T Consensus 170 ----~~~w-~~~~~~PiF~splcv~-----~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~ 238 (354)
T KOG4649|consen 170 ----TEFW-AATRFGPIFASPLCVG-----SSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLEN 238 (354)
T ss_pred ----ceeh-hhhcCCccccCceecc-----ceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEec
Confidence 0000 0111222221 1111 3344455566666666 45555555544444321 1111 3333333333
Q ss_pred CC--------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 238 RD--------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 238 ~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
.+ ..-.+|..+.+....... .+...+.-|+..+. ...++..++.||.+.|.-.+ +.+..+..|
T Consensus 239 ~~Cf~~~~p~~ghL~w~~~~g~t~~vy~--~p~l~F~~h~~~~S-----~~~ll~~~s~dgkv~il~~~--~sl~~~~s~ 309 (354)
T KOG4649|consen 239 ENCFCAPLPIAGHLLWATQSGTTLHVYL--SPKLRFDLHSPGIS-----YPKLLRRSSGDGKVMILMTS--KSLAEISSN 309 (354)
T ss_pred CCeEEEeccccceEEEEecCCcEEEEEe--CcccceeccCCCCc-----chhhhhhhcCCCcEEEEEec--ccccccccC
Confidence 22 223455555542100000 00001111211111 13567778889988877433 224444444
Q ss_pred CCCeeEEE--------EE-e---cCceeeeccCCCceeeccCCCC
Q 014475 310 KGPVNNIL--------VV-R---RPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 310 ~~~v~~l~--------~s-~---~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
.+.+..+. |+ | +| +|+.|+.|..++-||+.+.
T Consensus 310 ~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 310 GGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred CCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 44433333 22 2 33 5788899999999998753
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.8e-06 Score=80.58 Aligned_cols=175 Identities=14% Similarity=0.168 Sum_probs=124.6
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEE
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~ 128 (424)
.++.++.+..+ |.|++.+.+... .....|... .-+|.++++|+.||+|.|-.+-+.+...++. ...++.++
T Consensus 48 ~~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 48 HDKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred hcceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 45677788777 999999976553 333333332 5689999999999999999998888777665 45789999
Q ss_pred EEccC-----CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 129 VFSED-----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 129 ~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
+++|+ .+++++|+.-| +.++.-+-. .......+....++|.++.|.. ++++-++.+| |++
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wl---------gnk~~v~l~~~eG~I~~i~W~g----~lIAWand~G-v~v 183 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWL---------GNKDSVVLSEGEGPIHSIKWRG----NLIAWANDDG-VKV 183 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhh---------cCccceeeecCccceEEEEecC----cEEEEecCCC-cEE
Confidence 99997 56899999988 777754321 1111114556788999998853 6777777666 999
Q ss_pred EecCCCceeeeeecCc-------ceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 204 WSLLKGRLLRNIVFPS-------VIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 204 wd~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
||..+++.+..++.+. -...+.|.++.+ |+.|-. .+|++..++.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWG-DSVKICSIKK 234 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecC-CeEEEEEEec
Confidence 9999998887776332 234567766554 444443 4688888873
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=9.2e-06 Score=79.41 Aligned_cols=210 Identities=15% Similarity=0.133 Sum_probs=132.1
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC----cccc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL----TVFE 156 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~ 156 (424)
+.|.++.|..+...++.+...|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+-. ....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 58999999999999999999999999988766432 222345789999999999999988888777664431 1000
Q ss_pred hhcccccccce--------EEeecC---------------------CcCceeEEEEEEcCceeEEEEEe-----CCCcEE
Q 014475 157 ECESQRASHLY--------LHSFTG---------------------HTLRITDIVIGYGGVSATIVSAS-----EDRTCK 202 (424)
Q Consensus 157 ~~~~~~~~~~~--------~~~~~~---------------------~~~~i~~~~~~~~~~~~~l~~~~-----~d~~v~ 202 (424)
........... ...+.+ -.+.=+.+.|-.+| .++++.. ....++
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEE
Confidence 00000000000 000110 11112346676666 7888732 237899
Q ss_pred EEecCCCceeeee-ecCcceeEEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec
Q 014475 203 VWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (424)
Q Consensus 203 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (424)
+||-+ |.+-..- ...+.-.+++|-|.|..+++-. +|+.|.+|.-+.-... .....+.....++..++|+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeec
Confidence 99976 4332221 1344567899999999988753 4567888887654311 1122233334558999999
Q ss_pred C-CCEEEE---eCCCCcEEEEeCCCC
Q 014475 279 T-GDLLIS---GSEDGMVRVWDPITH 300 (424)
Q Consensus 279 ~-~~~l~t---~~~dg~i~iwd~~~~ 300 (424)
. +..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 9 888877 455556999988764
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=1.3e-06 Score=82.54 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=131.2
Q ss_pred CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR 213 (424)
Q Consensus 134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 213 (424)
+..++.|+....+..+|+++.. ..+...-..+.++- +..++ +.+.+|...|+|.+-|.++.+.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-----------e~r~~~v~a~~v~i--mR~Nn--r~lf~G~t~G~V~LrD~~s~~~ih 211 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-----------ETRTTNVSASGVTI--MRYNN--RNLFCGDTRGTVFLRDPNSFETIH 211 (1118)
T ss_pred Ccceeecchhhheeeeecccce-----------eeeeeeccCCceEE--EEecC--cEEEeecccceEEeecCCcCceee
Confidence 4457777777778888886622 11212212223333 33444 789999999999999999999999
Q ss_pred eee-cCcceeEEEECCCCCEEEEEeC---------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CC
Q 014475 214 NIV-FPSVIDAIALDPAEHVFYAGSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GD 281 (424)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~ 281 (424)
++. |.+.+..+.. .|+.|++++. |.-|.+||++.-. .+..+.-+.++ .-+.|+| ..
T Consensus 212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl~t 279 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSLTT 279 (1118)
T ss_pred eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh---------ccCCcccccCc-hhhhhcccccc
Confidence 998 8888877655 7888888764 4468899999853 23333323333 5678888 78
Q ss_pred EEEEeCCCCcEEEEeC---CCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCCc
Q 014475 282 LLISGSEDGMVRVWDP---ITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~---~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
.+++++..|...+-|. .+. .-+..+......+..+.++++++.|+.|..+|.|.+|.-.....+...
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~ 350 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEY 350 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCC
Confidence 8889999999999993 332 223334433445999999999999999999999999985544443333
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.6e-08 Score=94.61 Aligned_cols=201 Identities=16% Similarity=0.197 Sum_probs=140.2
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+..++++.|....+|++|+.+.++|+.|+..|.|+++++.++. ......+|.++|+-+.-+.++ ..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----------~e~s~ncH~SavT~vePs~dg--s~~ 1158 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----------MEESVNCHQSAVTLVEPSVDG--STQ 1158 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-----------ccccccccccccccccccCCc--cee
Confidence 3445667888999999999999999999999999999996643 345567899999999888887 454
Q ss_pred EEEeC-CC-cEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 193 VSASE-DR-TCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 193 ~~~~~-d~-~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
++.+. .. -..+|++.. +...+.+ ..-.++.|+..-..-+.|+......+||+++..+.... +....+..
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty-----lt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY-----LTDTVTSS 1230 (1516)
T ss_pred eeeccccCchHHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHh-----cCcchhhh
Confidence 44443 33 577999864 3333333 33456778776655666777778999999998532210 11111222
Q ss_pred cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
..-++..|+| +.+++ .|| .+||++..+.++.|...+. -..-.|+|+|..++.-+ -|||+++.++.
T Consensus 1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 3336788999 66655 455 4899999888888765442 22347999999888765 48998877663
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=3.2e-08 Score=89.47 Aligned_cols=265 Identities=16% Similarity=0.222 Sum_probs=155.5
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCce---eeeecCCCCeeEEEECC-CCCEEEEec----CCCcEEEEE
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS-HGTYIAGGG----QSGDIYMWE 108 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~v~iwd 108 (424)
..+.|++..+..+...+++|..+ |.|-+-.+....- .....+..++++++|++ |.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~at-G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSAT-GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhcccc-CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34667773344444456666666 9999988875543 34455678999999998 677788773 356799999
Q ss_pred ccCc--ceee--eecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 109 VASG--RLLK--KWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 109 ~~~~--~~~~--~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
+.++ .+.. .+.+ ......+++|..+.+++++|.....+.++|++.... ....-....+..+.+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~------------~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD------------SVSSVNTKYVQGITV 203 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh------------hhhhhhhhhccccee
Confidence 9877 2211 1222 334566899998899999999999999999964211 111112234555667
Q ss_pred EE-cCceeEEEEEeCCCcEEEEe-cCCC-ceeeeee-----cCcceeEEEECCCC-CEEEEE-eCCCcEEEEEcCCCCCC
Q 014475 184 GY-GGVSATIVSASEDRTCKVWS-LLKG-RLLRNIV-----FPSVIDAIALDPAE-HVFYAG-SRDGSIYIAALNAESPS 253 (424)
Q Consensus 184 ~~-~~~~~~l~~~~~d~~v~iwd-~~~~-~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~-~~dg~i~i~d~~~~~~~ 253 (424)
.| .+ +++++.. ||.|.+|| .++- .++..+. .+..+..++|+|.. ..+++. -..++|+++|+......
T Consensus 204 dp~~~--nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 204 DPFSP--NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred cCCCC--Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 77 33 5666555 99999999 4332 2222222 23458999999943 334444 45578999998654322
Q ss_pred CCCcCceeee--e---ecc--cCcCeEEEEecC-C--CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 254 TSSYGMHIIG--S---LSD--HSKAVTCLAYST-G--DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 254 ~~~~~~~~~~--~---~~~--~~~~i~~~~~~~-~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
........+. . ++. .-..|.+..|++ . +..+++-..-++.-+++.. ..+..|..|.+.+-|+-.
T Consensus 281 ~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~~ 354 (783)
T KOG1008|consen 281 GSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSFK 354 (783)
T ss_pred ccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhhc
Confidence 1111101111 0 111 124677777776 2 2334444444444444331 122334446777776643
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=0.00016 Score=62.45 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=159.1
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeee--cC-
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKS--LP- 79 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~--~~- 79 (424)
.+++.|.|..+++.+-.+..... .-+. .+|+++.+.++.. ....|.+||..+....... ..
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g~~-----~~~~--~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTGFL-----GNVA--LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK 88 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEESS-----EEEE--E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred cceEEEEECCCCcEEEEeecccC-----Ccee--ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence 35899999999998877765332 2233 7788888876532 1357999999987654321 11
Q ss_pred -----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 -----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
......++++.|++++++... ...|.|.|+..++.+.++... + +..+-=.++ +.|.+-+.||.+.-..+.
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGN-RGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEET-TEEEEEETTSCEEEEEET
T ss_pred chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCC-CceEEEecCCceEEEEEC
Confidence 123356688999998887643 456999999999888777532 2 222222223 457788889999999887
Q ss_pred cccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--eee-----------cC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-----------FP 218 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~-----------~~ 218 (424)
...+.. ......+..-..++. .-++...+ ..++..+.+|.|+--|+....... .+. .+
T Consensus 166 ~~Gk~~------~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 166 ADGKEA------QKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp STSSEE------EEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred CCCCEe------EeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 432211 111122222233332 22233333 455557788999988887554221 111 13
Q ss_pred cceeEEEECCCCCEEEEEeC--------CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEE-
Q 014475 219 SVIDAIALDPAEHVFYAGSR--------DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLIS- 285 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t- 285 (424)
+.-.-+++++..+.|++--. ++ .|.++|+.+. +.+..+.. ..++.+|+.+. ..+|++
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence 44566788876655555321 11 4777777776 45555542 34577898888 446654
Q ss_pred eCCCCcEEEEeCCCCcEEEEEec
Q 014475 286 GSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
...++.+.+||..+|+.++++..
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 45689999999999999999874
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.3e-05 Score=75.47 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=128.8
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC-eeEEEECCCCCEEEEecCCCc-----EEEEEccC
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGD-----IYMWEVAS 111 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~-----v~iwd~~~ 111 (424)
.+.| +++.+..++.+..+ |.|.+.+-.-....-...+... |..+....+..+|++.+.|+. |+||+++.
T Consensus 27 ~isc----~~s~~~~vvigt~~-G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC----CSSSTGSVVIGTAD-GRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE----EcCCCceEEEeecc-ccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 5666 67999999999988 8888887543332222233333 555544445578887776654 99999964
Q ss_pred c------ceee--eecc-----ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 112 G------RLLK--KWHA-----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 112 ~------~~~~--~~~~-----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
- .++. .+.. ...++.+++.+.+-+.+|+|-.+|.|..+.-+-.. ..............+|
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-------Drgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-------DRGSRQDYSHRGKEPI 174 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-------ccccceeeeccCCCCc
Confidence 3 2221 1111 35678999999999999999999999988532110 1111222233457899
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+.+.+..++... ++++ ....|.+|.+....+... +. ++...+|..+++....+++++. ..+.+|+....
T Consensus 175 TgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 175 TGLALRSDGKSV-LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred eeeEEecCCcee-EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 999999988422 3333 345799999874442222 33 6778889899886665665554 46999998875
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.58 E-value=1.9e-05 Score=73.48 Aligned_cols=189 Identities=7% Similarity=0.037 Sum_probs=121.6
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC-------------------------
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ------------------------- 100 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------------- 100 (424)
+.|||+.+...+...+.+.+.|.++.+......-.+....++++|+|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 6678887766666668999999998777666555556677888888888877751
Q ss_pred ---------------CCcEEEEEccC----c-ceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhc
Q 014475 101 ---------------SGDIYMWEVAS----G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECE 159 (424)
Q Consensus 101 ---------------dg~v~iwd~~~----~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 159 (424)
++.|.+.|..+ + +.+..+. -......+.++|||+++++++. +.++.+.|+.+......
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 23477777776 2 3344443 3455788999999998876654 88999999987543221
Q ss_pred ccc-cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC----------CceeeeeecCcceeEEE---
Q 014475 160 SQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVIDAIA--- 225 (424)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~i~~~~--- 225 (424)
... ..........-..++ ...+|..++ +...+...|..|..||+.+ ...+..+.....+-.+.
T Consensus 359 ~~~~~~~~vvaevevGlGP-LHTaFDg~G--~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~ 435 (635)
T PRK02888 359 GKIKPRDAVVAEPELGLGP-LHTAFDGRG--NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM 435 (635)
T ss_pred ccCCccceEEEeeccCCCc-ceEEECCCC--CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence 111 111122223322333 345676665 7888888999999999876 23444444222222222
Q ss_pred ---ECCCCCEEEEEeC
Q 014475 226 ---LDPAEHVFYAGSR 238 (424)
Q Consensus 226 ---~~~~~~~l~~~~~ 238 (424)
-.|+|++|++...
T Consensus 436 g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 436 GETKEADGKWLVSLNK 451 (635)
T ss_pred CCcCCCCCCEEEEccc
Confidence 3678999988653
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.7e-05 Score=73.25 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=91.7
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK----- 76 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~----- 76 (424)
+.+++.|+ .-|.+.+++-..++..+ ++... ....+.... .+++..++|+++.. |.|.++-+........
T Consensus 45 ~~~l~~Gs-S~G~lyl~~R~~~~~~~-~~~~~-~~~~~~~~~--vs~~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 45 EEYLAMGS-SAGSVYLYNRHTGEMRK-LKNEG-ATGITCVRS--VSSVEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred CceEEEec-ccceEEEEecCchhhhc-ccccC-ccceEEEEE--ecchhHhhhhhcCC-ceEEeehhhccCCCcceeecc
Confidence 35788899 89999999977665543 32211 222233333 56666666666665 9999998876432211
Q ss_pred --ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 77 --SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 77 --~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
..|...|+|++|++++..+.+|...|+|..-.+.+. ...+.+-.-.++|..+... ++.+|++... .-.+++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~~Lc~ 195 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RCILCQ 195 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hhheee
Confidence 235789999999999999999999999999888772 1122233345677777776 3333443332 234555
Q ss_pred CCc
Q 014475 151 LLT 153 (424)
Q Consensus 151 ~~~ 153 (424)
.+.
T Consensus 196 tE~ 198 (726)
T KOG3621|consen 196 TEA 198 (726)
T ss_pred cch
Confidence 543
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=0.00021 Score=65.21 Aligned_cols=117 Identities=16% Similarity=0.053 Sum_probs=82.0
Q ss_pred cCcceeEEEECC-CCCEEEEE----eCCCc----EEEEEcCCCCCCCCCcCceeee-eecccCcCeEEEEecC-CCEEEE
Q 014475 217 FPSVIDAIALDP-AEHVFYAG----SRDGS----IYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 217 ~~~~i~~~~~~~-~~~~l~~~----~~dg~----i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~l~t 285 (424)
.+....++.|+. ++..+.+. +.+|. -.+|+....+. +.+. +.......|.+++++| .+.++.
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-------qrvsvtsipL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-------QRVSVTSIPLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-------eEEEEEEEecCCcceEEecCcccceEEE
Confidence 444556667766 34444442 23443 34566654321 2221 2224678899999999 999999
Q ss_pred eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
|+.||+|.+||...+... +....-..+.++|+|+|..+++|+..|.+.+||....
T Consensus 277 GC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 277 GCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999999999998776333 2234456789999999999999999999999999744
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00029 Score=57.52 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=79.0
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC 127 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~ 127 (424)
++.+.++..++..+.+.--|..++...+.......+.+-+.- -|++++.|+..|.+++.+.++|+....+..-..-=..
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 444444444433499999999999998888877777665554 4678999999999999999999888777543221122
Q ss_pred EEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 128 LVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
....+++..+..++.|+..+..|.++
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccc
Confidence 34556899999999999999999965
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=0.00038 Score=60.18 Aligned_cols=270 Identities=15% Similarity=0.135 Sum_probs=153.7
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccccC-------
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAHYR------- 123 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~------- 123 (424)
+.+.+.|.++++..-. ...+-.-.+..+|+++.+++++ ..-.|.+||..+......+.-..+
T Consensus 17 ~rv~viD~d~~k~lGm-i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM-IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEE-EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEE-eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 6899999888775432 2233344467899999988753 233599999999877665432211
Q ss_pred CeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 124 AVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
....+.++.|++++++.- -.-.|.|-|+.. .+.+..+... . |...-|.++ ..+.+-|.||.+
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-----------~kvv~ei~~P--G--C~~iyP~~~-~~F~~lC~DGsl 159 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-----------KKVVGEIDTP--G--CWLIYPSGN-RGFSMLCGDGSL 159 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-----------TEEEEEEEGT--S--EEEEEEEET-TEEEEEETTSCE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCC-----------CceeeeecCC--C--EEEEEecCC-CceEEEecCCce
Confidence 123356666777665542 234566777743 3333333211 1 222334443 457888999999
Q ss_pred EEEecC-CCceeeeee---c--Cc-ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc----cCc
Q 014475 202 KVWSLL-KGRLLRNIV---F--PS-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----HSK 270 (424)
Q Consensus 202 ~iwd~~-~~~~~~~~~---~--~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~ 270 (424)
.-..+. .|+...... + .. ....-++...+..++--+.+|.|+-.|+........ ..+.....-.. -.+
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~-~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG-KPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE-EEEESS-HHHHHTTEEE-
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc-CcccccCccccccCcCCc
Confidence 999887 555543321 1 11 222334444555566678899999999887642111 00111000000 112
Q ss_pred CeEEEEecC-CCEEEEeC---C-----CC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc-eeee-ccCCCceeec
Q 014475 271 AVTCLAYST-GDLLISGS---E-----DG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNL-GSFSNPHTSS 337 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~---~-----dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~-~~~d~~i~iw 337 (424)
.-.-+++++ .+.|.+-. . |+ .|.++|+.+++.+.++.. ..++.++..+.+.+ +|.+ ...++.+.+|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 334467776 44444321 1 22 488889999999999985 35788999998765 5544 4568999999
Q ss_pred cCCCCCCCCCcc
Q 014475 338 RRHGSQLPPPLD 349 (424)
Q Consensus 338 ~~~~~~~~~~~~ 349 (424)
|..++++....+
T Consensus 318 D~~tGk~~~~~~ 329 (342)
T PF06433_consen 318 DAATGKLVRSIE 329 (342)
T ss_dssp ETTT--EEEEE-
T ss_pred eCcCCcEEeehh
Confidence 999886644433
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.51 E-value=4.7e-08 Score=88.40 Aligned_cols=201 Identities=19% Similarity=0.261 Sum_probs=132.7
Q ss_pred CCCeeEEEECC--CCCEEEEecCCCcEEEEEccCcce--eeeeccccCCeEEEEEcc-CCcEEEEeeC----CCcEEEEe
Q 014475 80 AEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSE----DGCVRIWS 150 (424)
Q Consensus 80 ~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~s~~~----dg~i~iwd 150 (424)
...+.|++++- +...+++|..+|.|.+-.++...- ....+++....++++|++ |.++||.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566777654 345788999999999988765422 334567888999999998 6667777632 56799999
Q ss_pred CCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-
Q 014475 151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP- 228 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~- 228 (424)
+.+.... +... ..+. +......+++|..+. +.+++|.....+.++|++.............+..+.++|
T Consensus 136 i~s~ltv-----Pke~--~~fs~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTV-----PKES--PLFSSSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPF 206 (783)
T ss_pred cccccCC-----Cccc--cccccccccCccccccccCc--chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCC
Confidence 9875320 0111 1111 133444577887655 888999999999999998433222222334677788899
Q ss_pred CCCEEEEEeCCCcEEEEEc-CCCCCCCCCcCceeeeeecccC----cCeEEEEecC--CCEEEEeCC-CCcEEEEeCC
Q 014475 229 AEHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHS----KAVTCLAYST--GDLLISGSE-DGMVRVWDPI 298 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~--~~~l~t~~~-dg~i~iwd~~ 298 (424)
.+.+++.-. ||.|.+||. ++-+ .++..+.... ..+..++|+| ...+++... .++|+++|+.
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 677776655 999999994 3322 2222222222 3489999999 556666664 5789999975
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.50 E-value=0.00011 Score=69.30 Aligned_cols=278 Identities=11% Similarity=0.041 Sum_probs=153.8
Q ss_pred ccccCCCCceeEEEEECCCCceeeeecCCCC-------ee--EEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475 52 LREQPSASSGSILYWSWSKPQVEVKSLPAEP-------IK--PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (424)
Q Consensus 52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~-------v~--~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 122 (424)
.+.++..+ +.|.-.|..+++.......... +. .+... ++..++.++.+|.|+-+|.++|+.+..+....
T Consensus 63 ~vy~~~~~-g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSH-SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCC-CcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 34445555 8999999998887766543221 00 11111 22577788889999999999999887765432
Q ss_pred CC--eEEEEEcc--CCcEEEEee---------CCCcEEEEeCCcccchhcccccccce--EEee------cCCc-Cce-e
Q 014475 123 RA--VTCLVFSE--DGSFLISGS---------EDGCVRIWSLLTVFEECESQRASHLY--LHSF------TGHT-LRI-T 179 (424)
Q Consensus 123 ~~--i~~~~~~~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~------~~~~-~~i-~ 179 (424)
.. -..+.-+| .+..++.++ .+|.+..+|..++...-......... .... ..+. ..+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 01111112 123455543 36788889988765433221110000 0000 0000 011 1
Q ss_pred EEEEEEcCceeEEEEEeCCC------------------cEEEEecCCCceeeeeecCc-ce------eEEEEC----CCC
Q 014475 180 DIVIGYGGVSATIVSASEDR------------------TCKVWSLLKGRLLRNIVFPS-VI------DAIALD----PAE 230 (424)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~~~~~~~~~~~-~i------~~~~~~----~~~ 230 (424)
..++.+.+ ..++.++.++ .|.-+|..+++....+.... .. ....+. -++
T Consensus 221 ~pa~d~~~--g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 221 SPTYDPKT--NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred CeeEeCCC--CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 22333333 5667776554 79999999999988875221 11 011111 123
Q ss_pred C---EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE-----------------eCCCC
Q 014475 231 H---VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS-----------------GSEDG 290 (424)
Q Consensus 231 ~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t-----------------~~~dg 290 (424)
. .+++++.+|.++..|.++++.... .... ...++.+|+..++. ...+|
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~---------~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISA---------RPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeE---------eEee---ccccccCCceEEEccccccccCcccccCCCCCCCce
Confidence 2 678888999999999999863221 1000 01122223222221 22467
Q ss_pred cEEEEeCCCCcEEEEEeccC--------CCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 291 MVRVWDPITHNIVRMFRLAK--------GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
.+.-.|+.+|+.+-+..... .+...-...-.+..|..++.||.++.+|..+++..
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 88899999999887766431 11111112235568888899999999999888764
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.49 E-value=5e-05 Score=63.67 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=103.8
Q ss_pred CCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 80 AEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 80 ~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
...+..++|+|+ +.++++....+.|..++. +|+.++.+.-. .+....|++..++.++++--.++.+.++++......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 346999999997 556677777888888886 57777776433 356889999988887777667899999988442211
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
..........+.....++..+-.++|.+.+ +.|+.+-+..-..++.++...
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~--------------------------- 150 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFP--------------------------- 150 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT---------------------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEcccc---------------------------
Confidence 110000000000111233445666666655 333333333222222221100
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC----
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---- 311 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---- 311 (424)
....+.+.+... ..........+.+++++| +++++....+..|..+| .+|+.+..+....+
T Consensus 151 ~~~~~~~~~~~~------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 151 GGFDLFVSDDQD------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp -SS--EEEE-HH------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred Cccceeeccccc------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence 011111111111 000112334578899999 78888888999999999 77888877764432
Q ss_pred -----CeeEEEEEecCceeeec
Q 014475 312 -----PVNNILVVRRPLYLNLG 328 (424)
Q Consensus 312 -----~v~~l~~s~~~~~l~~~ 328 (424)
.--.++|.++|...++.
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc
Confidence 45789999998665553
No 337
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.46 E-value=6.5e-05 Score=67.90 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=125.2
Q ss_pred CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh------cc-----------------------c---ccccceEEee
Q 014475 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC------ES-----------------------Q---RASHLYLHSF 171 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~-----------------------~---~~~~~~~~~~ 171 (424)
.|+.+.|.++...|++|...|.|.+|......... .. . .....+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999988889999999999998765432111 00 0 0112233444
Q ss_pred cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---------cceeEEEECC-----CC---CEEE
Q 014475 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDP-----AE---HVFY 234 (424)
Q Consensus 172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------~~i~~~~~~~-----~~---~~l~ 234 (424)
....++|++++.+.-| +++.|..+|.+.+.|+|....+..-... ..++++.|.. |+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 5568899999998664 9999999999999999988877764422 3567777752 33 5788
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE-ecC----------------------CCEEEEeCCCCc
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YST----------------------GDLLISGSEDGM 291 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----------------------~~~l~t~~~dg~ 291 (424)
+|+..|.+.+|.+..... ..+..........+.++|..+. ++. ..+++++ .+..
T Consensus 160 vGTn~G~v~~fkIlp~~~--g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ 236 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSN--GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESD 236 (395)
T ss_dssp EEETTSEEEEEEEEE-GG--G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred EEeCCCCEEEEEEecCCC--CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccc
Confidence 999999999998853111 1111122222234556655554 211 1244444 4667
Q ss_pred EEEEeCCCCcEEEEEeccCCCeeEEEEE-----ecCceeeeccCCCceeeccCCCCCC
Q 014475 292 VRVWDPITHNIVRMFRLAKGPVNNILVV-----RRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s-----~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
++++...+.+..+......-....+.+- ..+..|++-..+|.++++.++.-+.
T Consensus 237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 9999999888766554222233445553 4677888889999999999986543
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=1e-05 Score=73.45 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=69.4
Q ss_pred EEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475 64 LYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (424)
Q Consensus 64 ~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 139 (424)
.+|+....+.. .....+..|.+++++|+...++.|+.||+|.+||...+... +....-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEE
Confidence 34555444332 22346789999999999999999999999999998766333 2234566889999999999999
Q ss_pred eeCCCcEEEEeCCc
Q 014475 140 GSEDGCVRIWSLLT 153 (424)
Q Consensus 140 ~~~dg~i~iwd~~~ 153 (424)
|+..|.+.+||+.-
T Consensus 317 ~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQGELQCFDMAL 330 (545)
T ss_pred EcCCceEEEEEeec
Confidence 99999999999854
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=7.9e-06 Score=76.85 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=84.1
Q ss_pred eEEEECCCCCEEEEec----CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 84 KPIAANSHGTYIAGGG----QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~----~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
+-..|+|...++|+++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|=.-|.+.+|...+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~------ 90 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT------ 90 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC------
Confidence 4456888888888875 357899985 6776554332 112356799999888888888889999998744
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~ 207 (424)
.........|..+|..+.|+++| ..++++..-|.|.+|...
T Consensus 91 -----~e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 -----TETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -----ceeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEee
Confidence 23334456799999999999999 899999999999999875
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-05 Score=69.15 Aligned_cols=224 Identities=14% Similarity=0.059 Sum_probs=131.6
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
+++.+..+.+....+..|...|..++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-----------~~~vssy~a~-~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-----------SCVVSSYIAY-NQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-----------ceeeeheecc-CCceeee
Confidence 66666655566666778889999999999665 788899999999999965 3445556666 7899999
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCceee-eee---cCcceeEEE------ECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLR-NIV---FPSVIDAIA------LDPAEHVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~---~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
|.-+.. +++..|-..|.|.+||++..+-.. .+. ...+|..++ ..+.+.+++....+ +..|.+.....
T Consensus 243 wDlde~-h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 243 WDLDER-HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eccCCc-ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc
Confidence 998874 889999999999999998654321 111 122333332 23345555544443 44565544321
Q ss_pred CCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCc------EEE-EeCCCCcEEEEEe-ccCC-C------eeE
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGM------VRV-WDPITHNIVRMFR-LAKG-P------VNN 315 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~------i~i-wd~~~~~~~~~~~-~~~~-~------v~~ 315 (424)
. +.++..+ +..+...+++.++ +..|++.-.+.+ +-. -|-.+|.++...+ .+.+ . -..
T Consensus 320 ~-----~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a 393 (463)
T KOG1645|consen 320 C-----LPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA 393 (463)
T ss_pred C-----CCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence 1 1122222 2355667777777 445555443211 111 1223344333222 1111 1 111
Q ss_pred EEEEecCceee-eccCCCceeeccCCCCCCCCCc
Q 014475 316 ILVVRRPLYLN-LGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 316 l~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
+.-.++..+|+ .+...+.+.+||..+.+..+.+
T Consensus 394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTL 427 (463)
T ss_pred eeccccccEEEEecCCcceeEEeccchhheeeec
Confidence 22234555554 4666778999999977665443
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.41 E-value=0.00038 Score=60.65 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=133.9
Q ss_pred CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc---cccc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR---ASHL 166 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~ 166 (424)
..++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.++++++........... .+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999888 9999983332222222 233499999999777766664 59999999976443221110 0000
Q ss_pred eEEeecCCcCceeEEE-EEEcCceeEEEEEeCCCcEEEEecCCC-----ceeeeeecCcceeEEEECCCCCEEEEEeCCC
Q 014475 167 YLHSFTGHTLRITDIV-IGYGGVSATIVSASEDRTCKVWSLLKG-----RLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 167 ~~~~~~~~~~~i~~~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
...........+...+ -..... ...+.......|.+|..... +..+.+..+..+..++|. ++.+++|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence 0000111222333333 111222 33444444558888877653 566777789999999998 6667777754
Q ss_pred cEEEEEcCCCCCCCCCcCcee---eeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEE--EEeccCCCeeE
Q 014475 241 SIYIAALNAESPSTSSYGMHI---IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR--MFRLAKGPVNN 315 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~ 315 (424)
...+.|+.++....-...... .........++..+....+.+|++- |..-.+-| ..|++.+ .+.-. ....+
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~-~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWS-SAPQS 233 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEEcC-CchhE
Confidence 488889986542110000000 0001112234444555446666654 33233334 4565544 33332 34556
Q ss_pred EEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475 316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 316 l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
+++. ..||++.+.++ |.+|++.++++.+
T Consensus 234 ~~~~--~pyli~~~~~~-iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSNS-IEVRSLETGELVQ 261 (275)
T ss_pred EEEE--CCEEEEECCCE-EEEEECcCCcEEE
Confidence 6663 34777766644 9999999886643
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00017 Score=60.51 Aligned_cols=203 Identities=12% Similarity=0.136 Sum_probs=115.1
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR- 113 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~- 113 (424)
..+..++ |.|+.+.|++.....+.|...+.+ +++..+. ...+..-.|++..++.++++--.++.+.++++....
T Consensus 22 ~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 22 DELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred CCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 4477777 999877666665555999888875 4443332 224678899999888888877678999999884321
Q ss_pred -----eeeee-----ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 114 -----LLKKW-----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 114 -----~~~~~-----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
....+ ..++..+..++|.|.++.|+.+-...-..+|.+..........................+.++.+
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11112 13556789999999877777777776677777643110000000000000001223445788889
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc----------ceeEEEECCCCCEEEEEeCCCcEEEE
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------VIDAIALDPAEHVFYAGSRDGSIYIA 245 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (424)
+|... .+++.+..+..|..+| .+|+++..+.... ....+++.++|+++++ +.-+..++|
T Consensus 179 ~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 88754 7778888889999999 6788877776332 5789999999865554 455544443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=0.00017 Score=66.13 Aligned_cols=229 Identities=13% Similarity=0.165 Sum_probs=117.9
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE-eCCcccchh
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEEC 158 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~ 158 (424)
.-....+.++|+|+++++ +.+|...||.....+... .+.-....|.+.+ .+|+-...+.|.++ ++..
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~----- 99 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN----- 99 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-----
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCcc-----
Confidence 445789999999999998 457888888733322221 2334568898855 46777778889996 3321
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
.. ...+.. ...+..+-. | ..|...+.+ .|.+||..+++.+..+.... |..+.|++++.+++..+.
T Consensus 100 -----~~--~k~i~~-~~~~~~If~---G--~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 100 -----EV--VKSIKL-PFSVEKIFG---G--NLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp ------T--T------SS-EEEEE----S--SSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred -----cc--ceEEcC-CcccceEEc---C--cEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 00 011111 112222222 4 566666544 89999999999999998664 899999999999999875
Q ss_pred CCcEEEEEcCCCCCCC-CCcCce-eeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 239 DGSIYIAALNAESPST-SSYGMH-IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
+ .+++++.+...... ...+.. .......-...|.+..|..+ .++-.... .++.+ ..|+ ...+..-..++.=+
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkYl--~~Ge-~~~i~~ld~~~yll 238 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKYL--VNGE-TGIIAHLDKPLYLL 238 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEEE--ETTE-EEEEEE-SS--EEE
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEEE--EcCC-cceEEEcCCceEEE
Confidence 5 67777765530000 000000 12222222467888888744 44433333 56552 3232 23333234577777
Q ss_pred EEEecCceeeeccCCCceeeccCCC
Q 014475 317 LVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 317 ~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
...|+...+.....|+.+..+.++.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEccCCEEEEEECCCCEEEEEECH
Confidence 7888777788888888888777653
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.36 E-value=0.0012 Score=60.66 Aligned_cols=180 Identities=9% Similarity=0.042 Sum_probs=94.9
Q ss_pred eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-------ccccCCeEEEEEccCC
Q 014475 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDG 134 (424)
Q Consensus 62 ~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~ 134 (424)
.|++|+..........-..+.+.++.|+.+..++ +...||.+++||+. |+....+ ......+....+..+|
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 5999998776554333344899999999876655 45689999999985 3331111 1112223333444455
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 214 (424)
-.+++ .++.+.+.+-......................+........+..+. ...+....++.+.+.+-...+.
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~--~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR--VVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc--ceEEEEecCCEEEEEEcccccc---
Confidence 33333 4445544432211100000000000000011111110001233333 4444445556666444332211
Q ss_pred eecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+...+++..+++||+++++|.-..+|.+.+.+.+-.
T Consensus 213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 334568999999999999999999999999887654
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.34 E-value=0.00062 Score=61.67 Aligned_cols=236 Identities=15% Similarity=0.151 Sum_probs=128.8
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCccee-------------------------------------------eee
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-------------------------------------------KKW 118 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-------------------------------------------~~~ 118 (424)
.|+.+.|.++..-|++|...|.|.||.....+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5788999999888999999999999876432110 011
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE---cCc---eeEE
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGV---SATI 192 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~---~~~l 192 (424)
+...++|++++.+ |-.+++.|..+|.+.|.|++............ ...-......++++.|.. .++ .-.+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 2346789999997 55689999999999999997632211110000 001112345677887762 222 2578
Q ss_pred EEEeCCCcEEEEecCC---Ccee----eee-ecCcceeEEE-ECCC-C-------------------CEEEEEeCCCcEE
Q 014475 193 VSASEDRTCKVWSLLK---GRLL----RNI-VFPSVIDAIA-LDPA-E-------------------HVFYAGSRDGSIY 243 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~---~~~~----~~~-~~~~~i~~~~-~~~~-~-------------------~~l~~~~~dg~i~ 243 (424)
++|+..|.+.+|.+.- +... ... .+.+++..+. ++.+ | .-+++...+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 8999999999998741 1111 111 2344444443 3211 1 1244555577899
Q ss_pred EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-----C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC----CCe
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-----T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK----GPV 313 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~----~~v 313 (424)
++...+.+ ...+.+ ........+.+- . +..|++-..+|.|+++.+..-+.+..++.+. ..+
T Consensus 239 v~~~~~~k--------~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 239 VFKPPKSK--------GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp EE-TT-----------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred EEeCCCCc--------ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 99988764 222222 222222333342 2 6678888899999999999999998887643 245
Q ss_pred eEEEEEecCceeeeccC
Q 014475 314 NNILVVRRPLYLNLGSF 330 (424)
Q Consensus 314 ~~l~~s~~~~~l~~~~~ 330 (424)
....++++|..+.-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 67788999987765543
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.31 E-value=0.0035 Score=59.59 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=64.8
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCC-CCCceEEec---ceeecCCCccccCCCCceeEEEEECCCCceeeeecC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS-PPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP 79 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~ 79 (424)
.|..++ .++.|.-.|.++|+.+-++..... ......+.. ....-.+..++.+..+ +.+.-.|..+++.......
T Consensus 71 ~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-ARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-CEEEEEECCCCCEEeeccc
Confidence 456666 688999999999998877653211 011110100 0001123345555565 8999999999988766542
Q ss_pred CCC--eeEEEECC---CCCEEEEec------CCCcEEEEEccCcceeeee
Q 014475 80 AEP--IKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 80 ~~~--v~~~~~s~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~ 118 (424)
... -..+.-+| ++ .++++. .+|.|.-+|.++|+.+-.+
T Consensus 149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 211 01111122 34 444443 2688999999999887654
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.25 E-value=0.0016 Score=56.73 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=133.8
Q ss_pred ecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee--------
Q 014475 47 LASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-------- 118 (424)
Q Consensus 47 ~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------- 118 (424)
...++.|+.|..+ | +.+++..............+|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3567788888665 7 8999984444444444555699999999877776654 599999999765443311
Q ss_pred ------ccccCCeEEEE--EccCCcEEEEeeCCCcEEEEeCCcccchhccccccc-ceEEeecCCcCceeEEEEEEcCce
Q 014475 119 ------HAHYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 119 ------~~~~~~i~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
......+...+ -...+...+.......|.+|...... ... ...+.+. -...+.+++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-------~~f~~~~ke~~-lp~~~~~i~~~~---- 148 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-------NSFSKLLKEIS-LPDPPSSIAFLG---- 148 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-------ccccceeEEEE-cCCCcEEEEEeC----
Confidence 11223444444 11233333334445589999885521 111 2333333 346778888883
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecC-------------cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
+.++.|..+ ...+.|+.++.....+... .++..+.. +++.+|++. +..-.+.|..... .
T Consensus 149 ~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~-~--- 220 (275)
T PF00780_consen 149 NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEP-S--- 220 (275)
T ss_pred CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCc-C---
Confidence 566666644 4888999877654443211 12333333 345555543 3333344443321 1
Q ss_pred cCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
+ ...+. -...+.++++. ..+|+..+.+ .|.||++.++++++++...
T Consensus 221 ---r-~~~i~-W~~~p~~~~~~-~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 221 ---R-KSTIQ-WSSAPQSVAYS-SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ---c-ccEEE-cCCchhEEEEE-CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 0 11111 12345566664 4577776654 4999999999999998754
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00023 Score=66.08 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=86.7
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-----ee
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-----KW 118 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-----~~ 118 (424)
+...+++++.|++. |.+.+++-..++...... ..+.+..+..|++..++|+|+..|.|.++-+..+.... ..
T Consensus 41 ~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 41 VDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred eecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 66899999999998 999999988776654433 45566777789999999999999999999887642211 11
Q ss_pred -ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 119 -HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 119 -~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
+.|...|++++|++++..+.+|...|+|.+-.+..
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23778999999999999999999999999988855
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.00065 Score=60.60 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=126.5
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecc-eeecC----CCccccCCC-----C----ceeEEEEECCCC-----ce
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLAS----SQLREQPSA-----S----SGSILYWSWSKP-----QV 73 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~----~~~l~~~~~-----~----~g~i~vwd~~~~-----~~ 73 (424)
+.|+|.|..+.+.+.++.-.. ...+.++.. .+..+ ..++++|.. + .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888888887776654332 233444431 13332 456665532 1 199999999884 22
Q ss_pred e--eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 74 E--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 74 ~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
. ......++|++++-- ++. |+++. .+.|.+|++...+ ....-. .....+.++... +++++.|.....+.++
T Consensus 80 ~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 2 223357899999876 444 44443 4689999998877 333222 122356666665 5689999888888888
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------Cc----eeeeeecC
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GR----LLRNIVFP 218 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~----~~~~~~~~ 218 (424)
..+.. ........-......++++.+-.++ +.++.+..+|.+.++.... +. ....+..+
T Consensus 155 ~~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg 224 (321)
T PF03178_consen 155 RYDEE--------NNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG 224 (321)
T ss_dssp EEETT--------TE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S
T ss_pred EEEcc--------CCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC
Confidence 55320 1111112223345668888888776 5899999999999988752 11 23444467
Q ss_pred cceeEE---EECCC--CC------EEEEEeCCCcEEEE
Q 014475 219 SVIDAI---ALDPA--EH------VFYAGSRDGSIYIA 245 (424)
Q Consensus 219 ~~i~~~---~~~~~--~~------~l~~~~~dg~i~i~ 245 (424)
..|+++ ++.|. +. .++.++.+|.|...
T Consensus 225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 788888 55552 22 47888899988843
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.00077 Score=60.92 Aligned_cols=249 Identities=12% Similarity=0.079 Sum_probs=130.7
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC------------
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------------ 79 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~------------ 79 (424)
.+.+.|+|+++++....... ...+.... |+|+|+.++.... +.|.+++..++........
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~----~~~~~~~~--~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP----PPKLQDAK--WSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E----ETTBSEEE--E-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC----ccccccce--eecCCCeeEEEec--CceEEEECCCCCeEEeccccceeEEcCccce
Confidence 46788999998765543322 23455555 9999999998875 7899999876643322211
Q ss_pred ------CCCeeEEEECCCCCEEEEecCC-Cc-----------------------------------EEEEEccCcceee-
Q 014475 80 ------AEPIKPIAANSHGTYIAGGGQS-GD-----------------------------------IYMWEVASGRLLK- 116 (424)
Q Consensus 80 ------~~~v~~~~~s~~~~~l~~~~~d-g~-----------------------------------v~iwd~~~~~~~~- 116 (424)
-+.-..+.||||+++||....| .. +.|+|+.+++...
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence 1234688899999998865322 11 3445555554321
Q ss_pred ee----ccccCCeEEEEEccCCcEEEEe--eCCC---cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE-Ec
Q 014475 117 KW----HAHYRAVTCLVFSEDGSFLISG--SEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG-YG 186 (424)
Q Consensus 117 ~~----~~~~~~i~~~~~~~~~~~l~s~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 186 (424)
.. ..-...+..+.|.++++.|+.. ..+. .+.++|..++...... .....+.-..-....+. ++
T Consensus 174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-------~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-------EETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-------EEESSSSSSSSSEEEE-TTT
T ss_pred eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE-------EecCCcceeeecccccccCC
Confidence 11 1234457888999988844433 2222 3556666542211110 11111111222234444 44
Q ss_pred CceeEEEEEeCCCcEEE--EecCCCceeeeeecCccee-EEEECCCCCEEE-EEeCCC----cEEEEEcC-CCCCCCCCc
Q 014475 187 GVSATIVSASEDRTCKV--WSLLKGRLLRNIVFPSVID-AIALDPAEHVFY-AGSRDG----SIYIAALN-AESPSTSSY 257 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~i--wd~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~dg----~i~i~d~~-~~~~~~~~~ 257 (424)
+. .++.....+|.-+| ++...+.........-.|. -+.++++++.++ ++..++ .++..++. .+
T Consensus 247 ~~-~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~------- 318 (353)
T PF00930_consen 247 GN-EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG------- 318 (353)
T ss_dssp SS-EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-------
T ss_pred CC-EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-------
Confidence 43 66666667876554 5555555332222455564 467788766554 454422 45555555 32
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~ 286 (424)
....+......-..+.|+| +++++-.
T Consensus 319 ---~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 319 ---EPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ---EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ---CeEeccCCCCCceEEEECCCCCEEEEE
Confidence 2233332222226889999 7766643
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.19 E-value=0.0002 Score=69.39 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=96.8
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCC-------CccccCCCCceeEEEEECCCCc--e
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-------QLREQPSASSGSILYWSWSKPQ--V 73 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~~~g~i~vwd~~~~~--~ 73 (424)
.+|.... ....|+--|++.|+.+..++.+...+ |.. +.|+. ...+.|-.+ +.+..||.+-.. +
T Consensus 495 mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~--v~~----~~p~~K~aqlt~e~tflGls~-n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 495 MILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIP--VVD----IAPDSKFAQLTNEQTFLGLSD-NSLFRIDPRLSGNKL 566 (794)
T ss_pred eEeecCC-CCCceEEEecCCCcEEEEeecCCCcc--eeE----ecccccccccCCCceEEEECC-CceEEeccCCCCCce
Confidence 3455555 66889999999999999998765322 444 33432 222334343 889999987532 2
Q ss_pred eeee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 74 EVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 74 ~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
.... .......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+.||+++++.+. ..|.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 2111 234577888888777 6999999999999994333334455677899999999999999887665 477787
Q ss_pred eC
Q 014475 150 SL 151 (424)
Q Consensus 150 d~ 151 (424)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 75
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.00035 Score=64.17 Aligned_cols=215 Identities=12% Similarity=0.061 Sum_probs=108.5
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
...+. ++|+|+.+++++. |.-.++.....+. ...+.-....|.+.++ +|+-...+.|.|+.--+.+....+
T Consensus 35 p~~ls--~npngr~v~V~g~--geY~iyt~~~~r~----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 35 PQSLS--HNPNGRFVLVCGD--GEYEIYTALAWRN----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp -SEEE--E-TTSSEEEEEET--TEEEEEETTTTEE----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred CeeEE--ECCCCCEEEEEcC--CEEEEEEccCCcc----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEE
Confidence 44555 9999999999554 7888887333222 1234556778888555 566566788999743333333344
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
+.. ..+..+-. |..|+..+.+ .|.+||+++ ...+..+... +|..+.|++++ .+++..+.+
T Consensus 106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~-----------~~~i~~i~v~--~vk~V~Ws~~g--~~val~t~~ 165 (443)
T PF04053_consen 106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWET-----------GKLIRRIDVS--AVKYVIWSDDG--ELVALVTKD 165 (443)
T ss_dssp --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------------EEEEESS---E-EEEEE-TTS--SEEEEE-S-
T ss_pred cCC-cccceEEc---CcEEEEECCC-CEEEEEhhH-----------cceeeEEecC--CCcEEEEECCC--CEEEEEeCC
Confidence 322 22444433 7777776654 899999965 3445555533 48899999998 777777754
Q ss_pred CcEEEEecCCC-----------ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 199 RTCKVWSLLKG-----------RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 199 ~~v~iwd~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
.+.+++.+.. .....+. ....|.+.+|..+ .++-.+.. .+.. +-.+. ...+.
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge----------~~~i~ 229 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE----------TGIIA 229 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE----------EEEEE
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC----------cceEE
Confidence 6777775433 0233333 3678888899765 33333333 5554 33332 12222
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
.-..++.-+.+.+ .+.+.....|+.|..+.+.
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 2234555556666 5667777777777777654
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.18 E-value=0.00083 Score=59.91 Aligned_cols=220 Identities=17% Similarity=0.229 Sum_probs=124.8
Q ss_pred CcEEEEEccCcceeeeeccc-cCCeEEEE---EccC----CcEEEEeeC----------CCcEEEEeCCcccchhccccc
Q 014475 102 GDIYMWEVASGRLLKKWHAH-YRAVTCLV---FSED----GSFLISGSE----------DGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 102 g~v~iwd~~~~~~~~~~~~~-~~~i~~~~---~~~~----~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~ 163 (424)
..|++.|..+.+.+..+.-. ...+.+++ +..+ ..++++|+. .|.|.++++.+.. ....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~----~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP----ENNF 77 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc----ccce
Confidence 35888888888777655322 23344444 3322 467777653 2899999996630 0001
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (424)
+...+. .....++|++++-. .+ . ++.+. ++.|.+|++...+ ....-....++...+....++++++|.....+
T Consensus 78 ~l~~i~-~~~~~g~V~ai~~~-~~--~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 78 KLKLIH-STEVKGPVTAICSF-NG--R-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEE-EEEESS-EEEEEEE-TT--E-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEE-EEeecCcceEhhhh-CC--E-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCE
Confidence 111222 23357888888766 32 4 44444 4789999998887 55544444444444444557799999998889
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------C--cEEEEEecc-CC
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------H--NIVRMFRLA-KG 311 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-------~--~~~~~~~~~-~~ 311 (424)
.++..+.... ....+.. ......++++.+-+ ++.++.++.+|.+.++.... + +......-| ..
T Consensus 152 ~~~~~~~~~~-----~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~ 225 (321)
T PF03178_consen 152 SLLRYDEENN-----KLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD 225 (321)
T ss_dssp EEEEEETTTE------EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred EEEEEEccCC-----EEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence 9886655320 0122221 12345688888874 56999999999999998762 2 222222223 34
Q ss_pred CeeEE---EEEec--C------ceeeeccCCCceeec
Q 014475 312 PVNNI---LVVRR--P------LYLNLGSFSNPHTSS 337 (424)
Q Consensus 312 ~v~~l---~~s~~--~------~~l~~~~~d~~i~iw 337 (424)
.|+++ .+.|. + ..++.++.+|.|..-
T Consensus 226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 66766 44441 2 237777788887733
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.17 E-value=0.0029 Score=58.14 Aligned_cols=197 Identities=19% Similarity=0.208 Sum_probs=104.8
Q ss_pred cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
.|.||+. .|+.+.++.-..+.+.++.|..+. .|++-..||.++++|+.... ... -...+....-....+....
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fs----l~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFS----LGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eec----hhhhccccCcccccccccc
Confidence 4888884 677777665444899999999755 46666789999999985321 000 0001111111112222222
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCccee---------E-EEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVID---------A-IALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~---------~-~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+...| ++.-..++.+.+.+-.... ..+.+. .+.... . ..++.+....+....++.+.+.+-...
T Consensus 135 ~~~~G----ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKNG----IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCCC----EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 22222 2222334444433221111 111111 111000 0 223334444444445555554443321
Q ss_pred CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCc
Q 014475 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPL 323 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~ 323 (424)
. .+ ...+++..|+.|| ++++|.-..+|.+.+.+..-.+.+..+... ..+...+.|.-+..
T Consensus 211 ~------------~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 K------------QI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c------------cc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 1 01 1246899999999 999999999999999987766666666644 34566777776543
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.16 E-value=0.0044 Score=54.87 Aligned_cols=296 Identities=9% Similarity=0.005 Sum_probs=132.6
Q ss_pred EeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCC-CCeeEEEECCCCCE
Q 014475 18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTY 94 (424)
Q Consensus 18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~ 94 (424)
-|..||..+..+.....+......-...|.++|+.|+.++..+ ..+.+.|+.+++........ ........+|+.+.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 3667888888776555433333333344889998877766533 46677778888776554432 33445677888888
Q ss_pred EEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCC----------------------CcEEEEe
Q 014475 95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSED----------------------GCVRIWS 150 (424)
Q Consensus 95 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~d----------------------g~i~iwd 150 (424)
++.......|.-.|+++.+....+......+-...|.. ++..++-.-.. ..|.--|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 77655556899999999877666665555555566642 45444322111 1122222
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCc-EEEEecCC-Cceeeeee---cCccee
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRT-CKVWSLLK-GRLLRNIV---FPSVID 222 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~-v~iwd~~~-~~~~~~~~---~~~~i~ 222 (424)
+.++ ....+..-...+..+.++|..+ ..|+.|-+ +.. -+||-+++ +...+.+. ....+.
T Consensus 175 l~tG------------~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 175 LKTG------------ERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp TTT--------------EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred CCCC------------ceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 2221 1122222344566777888763 45555443 221 36665543 22222222 234455
Q ss_pred EEEECCCCCEEEEEe--C---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC-------
Q 014475 223 AIALDPAEHVFYAGS--R---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED------- 289 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~--~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d------- 289 (424)
.=-|.|+|..+.--+ . +..|.-+|..+... ..+... .+......++ +.+++-=+.|
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-------~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~ 310 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-------RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVAD 310 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-------EEEEEE-----SEEEEEE-TTSSEEEEEE---------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-------eEEEeC----CceeeeEEcCCCCEEEecCCCCCccccc
Confidence 556899988765422 2 23455666666431 111111 1223334445 5555433332
Q ss_pred ---------CcEEEEeCCCCcEEEEEeccC----------C-CeeEEEEEecCceeee-ccCCCceeecc
Q 014475 290 ---------GMVRVWDPITHNIVRMFRLAK----------G-PVNNILVVRRPLYLNL-GSFSNPHTSSR 338 (424)
Q Consensus 290 ---------g~i~iwd~~~~~~~~~~~~~~----------~-~v~~l~~s~~~~~l~~-~~~d~~i~iw~ 338 (424)
-.|+++++..++... +..|. . .=....|+||+++++- +...|...++-
T Consensus 311 ~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 311 AGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp ----------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 156678887765432 22121 1 1256799999998765 44566555543
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00027 Score=64.60 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=111.9
Q ss_pred eecCCCccccCCCCc---eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCc--EEEEEccCcceeeeec
Q 014475 46 FLASSQLREQPSASS---GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGD--IYMWEVASGRLLKKWH 119 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~---g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~--v~iwd~~~~~~~~~~~ 119 (424)
|+|+++.++...... ..+.++++++++........+.-..-+|+|||+.|+.. ..||. |+++|+..+...+ +.
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt 278 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT 278 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cc
Confidence 999999877653222 35999999988776665566677788999999988765 44554 7777877766333 44
Q ss_pred cccCCeEEEEEccCCcEEEEee-CCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475 120 AHYRAVTCLVFSEDGSFLISGS-EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 120 ~~~~~i~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
...+.-..=.|+|||+.++-.+ ..|. |.+.+.+.. .. ..+......-..-.|+|++ ++++..+
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----------~~--~riT~~~~~~~~p~~SpdG--~~i~~~~ 344 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----------QV--TRLTFSGGGNSNPVWSPDG--DKIVFES 344 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----------ce--eEeeccCCCCcCccCCCCC--CEEEEEe
Confidence 3333334677999999887554 4454 455555431 11 1222222222256788998 5655555
Q ss_pred C-CCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475 197 E-DRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 197 ~-d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
. +|. |.+.|+.++...+.+........-.+.|+++.++..+.
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 3 344 66677766665555556666666778888887765543
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0067 Score=55.35 Aligned_cols=278 Identities=15% Similarity=0.151 Sum_probs=174.6
Q ss_pred eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-CCeeEEEECCCCC
Q 014475 15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGT 93 (424)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~ 93 (424)
+.+++..+......+.... .+.++. +.+++..+.++......+..-+............. ..-..++.++.++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~-----~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVA-----VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeE-----EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC
Confidence 7788877777666665443 223333 67777554444332134444444422222211111 3456778888887
Q ss_pred EE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEE
Q 014475 94 YI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 94 ~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
.+ +....++.|.+.|..+.+......... ....+.++|+++.+.++.. ++.+.+.|-.+ .....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-----------~~~~~ 154 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-----------NKVTA 154 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-----------CeEEE
Confidence 44 444456889999987777776664333 5678999999977766655 57788888754 22233
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee-----eeecCcceeEEEECCCCCEEEEEeCC---Cc
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHVFYAGSRD---GS 241 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~ 241 (424)
....-..+ ..+++.|++. ...++-..++.+.+.|........ ..........+.++|++..+++.... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 33322234 7889999983 344455578999999977665553 23344556788999999977776544 58
Q ss_pred EEEEEcCCCCCCCCCcCceeeee-ec-ccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCCCcEEEEEeccCC---Cee
Q 014475 242 IYIAALNAESPSTSSYGMHIIGS-LS-DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFRLAKG---PVN 314 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~~~~~~~~~~---~v~ 314 (424)
+...|...+. .... .. +.. ....+..+| +..+.+. +..+.+.+-|..+......+..... .+.
T Consensus 233 v~~id~~~~~---------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 233 VLKIDTATGN---------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EEEEeCCCce---------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence 8888888863 1221 11 111 455678889 7777776 4558899999998888877664433 456
Q ss_pred EEEEEecC
Q 014475 315 NILVVRRP 322 (424)
Q Consensus 315 ~l~~s~~~ 322 (424)
.+++.+..
T Consensus 303 ~~~~~~~~ 310 (381)
T COG3391 303 SIAISPLY 310 (381)
T ss_pred eccceeec
Confidence 66666644
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0038 Score=56.93 Aligned_cols=196 Identities=11% Similarity=0.075 Sum_probs=134.1
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcceeeeecccc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHY 122 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~ 122 (424)
..+.+..+.+...+++.|.+.|..................++++|+++.+.++.. ++.+.+.|..+++.+.......
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 6777775555554458999999777666555555557889999999987777655 6889999999988888765444
Q ss_pred CCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--C
Q 014475 123 RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--R 199 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--~ 199 (424)
.+ ..+++.|+++.+..+. .++.|.+.|........ ........ -...-..+.+.+++. ...++...+ +
T Consensus 161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~------~~~~~~~~-~~~~P~~i~v~~~g~-~~yV~~~~~~~~ 231 (381)
T COG3391 161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR------GSVGSLVG-VGTGPAGIAVDPDGN-RVYVANDGSGSN 231 (381)
T ss_pred Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec------cccccccc-cCCCCceEEECCCCC-EEEEEeccCCCc
Confidence 44 8999999999666554 68899999975521100 00000111 122334678888884 233333333 6
Q ss_pred cEEEEecCCCceeee-eecCc-ceeEEEECCCCCEEEEEeCC-CcEEEEEcCCC
Q 014475 200 TCKVWSLLKGRLLRN-IVFPS-VIDAIALDPAEHVFYAGSRD-GSIYIAALNAE 250 (424)
Q Consensus 200 ~v~iwd~~~~~~~~~-~~~~~-~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~ 250 (424)
.+...|..++..... ..... ....+..+|+|..+.+.... +.+.+.|..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 899999988877665 22222 56778999999999988544 78888888875
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.0034 Score=54.76 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eeeec-----CCCCee
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL-----PAEPIK 84 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~~~-----~~~~v~ 84 (424)
..+.|.-||.++|+.. .+... ..+.+.. ....+..|+++. ..+.+++.+.+.. ..... .....+
T Consensus 45 ~~~~i~r~~~~~g~~~-~~~~p----~~~~~~~--~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKKR-VFPSP----GGFSSGA--LIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCceE-EEECC----CCcccce--eecCCCeEEEEc---cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 4567777776655433 22221 1222222 223333444433 3466666654444 21111 234667
Q ss_pred EEEECCCCCEEEEecC-----------CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCC
Q 014475 85 PIAANSHGTYIAGGGQ-----------SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL 152 (424)
Q Consensus 85 ~~~~s~~~~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~ 152 (424)
.+...|+|.+.++... -|.|+.++. .+..++.+..+-..-+.|+|+||++.|..+.. .+.|.-|++.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 8889999987776443 133444443 56666666666677789999999987776655 4778888775
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecCCCceeeeeecC-cceeEEEEC-CC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFP-SVIDAIALD-PA 229 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~ 229 (424)
.. .................+..-.++...++ .+-+++..+| .|..|+.+ ++++..+..+ ..+++++|- |+
T Consensus 194 ~~----~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~ 266 (307)
T COG3386 194 PA----TGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD 266 (307)
T ss_pred cc----cCccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence 30 00011111122233345666677777776 5554444443 89999988 9999999876 778888884 34
Q ss_pred CCEEEEEe
Q 014475 230 EHVFYAGS 237 (424)
Q Consensus 230 ~~~l~~~~ 237 (424)
.+.|++.+
T Consensus 267 ~~~L~iTs 274 (307)
T COG3386 267 LNTLYITS 274 (307)
T ss_pred cCEEEEEe
Confidence 45554444
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.03 E-value=0.01 Score=56.49 Aligned_cols=289 Identities=11% Similarity=0.034 Sum_probs=155.1
Q ss_pred CccccCCCCceeEEEEECCCCceeeeecCCCC--ee---E-------EEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEP--IK---P-------IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~--v~---~-------~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
..+.+++.+ +.|.-.|..+++...+.....+ +. + +++ .+..++.++.|+.|.-.|.++|+.+...
T Consensus 70 g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 70 GVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 344445554 7898899999888776543221 11 1 122 2345777788999999999999988765
Q ss_pred ccccCC-eEEEEEcc---CCcEEEEeeC------CCcEEEEeCCcccchhcccccccce---------------EEee--
Q 014475 119 HAHYRA-VTCLVFSE---DGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLY---------------LHSF-- 171 (424)
Q Consensus 119 ~~~~~~-i~~~~~~~---~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~-- 171 (424)
...... -..+.-+| ++ .++++.. +|.|.-+|.+++...-......... ..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 421100 01111122 34 4444432 6889999988866543322111000 0000
Q ss_pred ---cCCcCcee-EEEEEEcCceeEEEEEeCC-----C-----------cEEEEecCCCceeeeeec---C-------cce
Q 014475 172 ---TGHTLRIT-DIVIGYGGVSATIVSASED-----R-----------TCKVWSLLKGRLLRNIVF---P-------SVI 221 (424)
Q Consensus 172 ---~~~~~~i~-~~~~~~~~~~~~l~~~~~d-----~-----------~v~iwd~~~~~~~~~~~~---~-------~~i 221 (424)
..-...+. .+.+.+.. .++..+... + .|.-.|+++|+....++. + ...
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00011121 22344433 444444311 2 677789999998887762 1 122
Q ss_pred eEEEECCCCC---EEEEEeCCCcEEEEEcCCCCCCCCCc-----Cc---------eeee----------------eeccc
Q 014475 222 DAIALDPAEH---VFYAGSRDGSIYIAALNAESPSTSSY-----GM---------HIIG----------------SLSDH 268 (424)
Q Consensus 222 ~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~---------~~~~----------------~~~~~ 268 (424)
.-+.+..+|+ .++.+..+|.+++.|.++++...... .+ .++. ...+.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~ 383 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF 383 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence 2233334665 77889999999999999886531100 00 0000 00000
Q ss_pred CcCe--EEEEecC-CCEEEEeCC---------------------------------CCcEEEEeCCCCcEEEEEeccCCC
Q 014475 269 SKAV--TCLAYST-GDLLISGSE---------------------------------DGMVRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 269 ~~~i--~~~~~~~-~~~l~t~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~ 312 (424)
.+.+ ..++++| ..+++.... -|.|.-+|+.+++.+-+.+.....
T Consensus 384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~ 463 (527)
T TIGR03075 384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL 463 (527)
T ss_pred cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence 0000 1134444 333322211 256888899999888776632222
Q ss_pred eeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475 313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 313 v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
..+. ..-.+..++.++.||.++.+|.++++..-
T Consensus 464 ~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 464 WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 2222 23355567778889999999999997644
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.0006 Score=62.42 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=119.8
Q ss_pred cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee---CC-CcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS---ED-GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
.+.+-|.. +.....+......+..-.|+|+++.++..+ .. ..+.+++++++ ....+..+.++..
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---------~~~~i~~~~g~~~-- 241 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---------KRPVILNFNGNNG-- 241 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---------ccceeeccCCccC--
Confidence 34444443 544555555556777788999888765442 22 35899999773 3333334444443
Q ss_pred eEEEEEEcCceeEEEEEeCCCc--EEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeC-CC--cEEEEEcCCCCC
Q 014475 179 TDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESP 252 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~--v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~ 252 (424)
.-.|+|++. ..+++...||. |.+.|+..+...+ +. ..+.-..-.|+|+|+.++-.+. .| .|.+++.+...
T Consensus 242 -~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~- 317 (425)
T COG0823 242 -APAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ- 317 (425)
T ss_pred -CccCCCCCC-EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-
Confidence 347999984 66667777776 5556777666433 44 3334446689999998876654 44 46666666543
Q ss_pred CCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-CCc--EEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
...+......-..-.|+| |++|+..+. +|. |.+.|+.++..++.+. .......-.|.+++..+...
T Consensus 318 ---------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 318 ---------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ---------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 122222222222567888 887777664 344 7777777666544443 33344556777888777654
Q ss_pred c
Q 014475 329 S 329 (424)
Q Consensus 329 ~ 329 (424)
+
T Consensus 388 s 388 (425)
T COG0823 388 S 388 (425)
T ss_pred c
Confidence 4
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00027 Score=63.52 Aligned_cols=141 Identities=11% Similarity=0.203 Sum_probs=101.3
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC-------EEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
-.+.++.....++-.|+..|+.+........|+-+.+.|+.+ .-++|-.+..|.-||.+-... ..+
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~kl 419 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NKL 419 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------cee
Confidence 445566677789999999999999999777788888988653 235677889999999986542 122
Q ss_pred eeecccC----cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE-EEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 263 GSLSDHS----KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 263 ~~~~~~~----~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
...++|. ....|.+-....++++||.+|.||+||- .+..- .-+++-..+|..+..+.+|++|++.+. ..+.+-
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi 497 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLI 497 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEE
Confidence 2333332 3345555444789999999999999996 45443 446677789999999999999877654 444444
Q ss_pred cC
Q 014475 338 RR 339 (424)
Q Consensus 338 ~~ 339 (424)
++
T Consensus 498 ~t 499 (644)
T KOG2395|consen 498 DT 499 (644)
T ss_pred EE
Confidence 43
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00017 Score=69.95 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=96.1
Q ss_pred EeCCCcEEEEecCCCceeeeeecCcceeEEEECCC-------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475 195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (424)
......|+-.|+..|+.+........+.-..+.|+ ....++|-.+..+..||.|-...... ......+ .
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v---~~~~k~Y-~ 575 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV---DSQSKQY-S 575 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee---ecccccc-c
Confidence 34567899999999999999985544434455553 33467788899999999997531100 0001111 2
Q ss_pred cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEE-EEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 268 HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 268 ~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
.....+|++-+...+||.|+.+|.||+||- .|+.- ..+.+-..||.+|..+.||++|++.+ +..+.+.+.
T Consensus 576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 345677777776889999999999999994 44333 34556678999999999999988765 444555554
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.96 E-value=0.016 Score=53.83 Aligned_cols=237 Identities=10% Similarity=0.044 Sum_probs=125.4
Q ss_pred eecCCCccccC----CCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC-----------cEEEEEcc
Q 014475 46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVA 110 (424)
Q Consensus 46 ~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------~v~iwd~~ 110 (424)
++|+|+++|.+ |.+...+++.|+++++.............+.|.++++.|+....+. .|+.|.+.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 89999999855 4444679999999987654333322233499999988877664332 37888877
Q ss_pred Cccee--eeeccccCC--eEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 111 SGRLL--KKWHAHYRA--VTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 111 ~~~~~--~~~~~~~~~--i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
+.... ..+...... ...+..++++++++..+.. ..+.+.++.... ........+..+...+....
T Consensus 211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-------~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-------SPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT-------TSS-SEEEEEESSSS-EEEE
T ss_pred CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC-------CCcCCcEEEeCCCCceEEEE
Confidence 66432 344443332 5678899999987754332 347777875521 00111222222333333322
Q ss_pred EEEcCceeEEEEEe---CCCcEEEEecCCCce---e-eeeecCc--ceeEEEECCCCCEEEEE-eCCC--cEEEEEcC-C
Q 014475 183 IGYGGVSATIVSAS---EDRTCKVWSLLKGRL---L-RNIVFPS--VIDAIALDPAEHVFYAG-SRDG--SIYIAALN-A 249 (424)
Q Consensus 183 ~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~---~-~~~~~~~--~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~-~ 249 (424)
-...+ .+++... ..+.|.-.++.+... . ..+.+.. .+..+.. .+.+|+.. ..++ .|+++++. .
T Consensus 284 ~~~~~--~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 284 DHHGD--RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEETT--EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EccCC--EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC
Confidence 22332 3444332 235677777776653 2 2222444 3444443 44445444 4444 68888888 3
Q ss_pred CCCCCCCcCceeeeeecc-cCcCeEEEEecC--CCEEEEeC---CCCcEEEEeCCCCcEE
Q 014475 250 ESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLISGS---EDGMVRVWDPITHNIV 303 (424)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~~l~t~~---~dg~i~iwd~~~~~~~ 303 (424)
. ....... -.+.|..+...+ ..+.++.+ .-+++.-||+.+++..
T Consensus 360 ~----------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 K----------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp E----------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred c----------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2 2222221 233355555444 33333333 2457888888887643
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.011 Score=51.60 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=127.1
Q ss_pred EECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475 87 AANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 87 ~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++.. -+.+++.+++...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-------- 98 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-------- 98 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee--------
Confidence 3566655 4455556678888988766432 222 2233455554444555665543 3666776432110
Q ss_pred ceEEe-ecC-CcCceeEEEEEEcCceeEEEEEeC-----------CCcEEEEecCCCceeeeeec-CcceeEEEECCCCC
Q 014475 166 LYLHS-FTG-HTLRITDIVIGYGGVSATIVSASE-----------DRTCKVWSLLKGRLLRNIVF-PSVIDAIALDPAEH 231 (424)
Q Consensus 166 ~~~~~-~~~-~~~~i~~~~~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~ 231 (424)
..+.. ..+ .....+++.+.+++ .+-++... -|.+..+|. .+...+.+.. -...+.++|||+++
T Consensus 99 t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 99 TLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred EEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCC
Confidence 11111 111 12455667777776 33332222 133444443 4554444443 56678999999998
Q ss_pred EEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC-cEEEEeCCCCcEEEEEec
Q 014475 232 VFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 232 ~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~ 308 (424)
.|+.... .+.|+-|++......... ...........+..-.++... |.+.+++..+| .|.+|+.. |+++..+..
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~--~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGG--RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCC--cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 8887765 478888888741111111 111222223445566677777 66665555444 89999988 999999998
Q ss_pred cCCCeeEEEEE-ecCceeeec
Q 014475 309 AKGPVNNILVV-RRPLYLNLG 328 (424)
Q Consensus 309 ~~~~v~~l~~s-~~~~~l~~~ 328 (424)
+...+++++|- |+.+.|...
T Consensus 253 P~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCCCccceEeCCCcCEEEEE
Confidence 87888888887 445555433
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.89 E-value=0.0022 Score=45.61 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=72.7
Q ss_pred eeEEEEEE---cCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475 178 ITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254 (424)
Q Consensus 178 i~~~~~~~---~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (424)
|+++++.. ++. +.|++|+.|..|++|+- .+.+..+.....+.+++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 55666654 333 78999999999999984 577888888888999888776 568889999999999875432
Q ss_pred CCcCceeeeeecccCcCeEEEEecC-C----CEEEEeCCCCcEE
Q 014475 255 SSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISGSEDGMVR 293 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t~~~dg~i~ 293 (424)
-..+ ....++++.+.. . .-|++|-.+|.|-
T Consensus 75 --------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 --------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1122 223367776655 3 3788888888774
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.88 E-value=0.0047 Score=59.18 Aligned_cols=230 Identities=14% Similarity=0.202 Sum_probs=125.0
Q ss_pred CCCCCEEEEecCCC------cEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCC-C-----cEEEEeCCcc
Q 014475 89 NSHGTYIAGGGQSG------DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-G-----CVRIWSLLTV 154 (424)
Q Consensus 89 s~~~~~l~~~~~dg------~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-g-----~i~iwd~~~~ 154 (424)
+..+.+++.||.++ .+..||..++.-.. .+. ....-.+++.. ++...++|+.| | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~- 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT- 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC-
Confidence 34466778888774 58889988774332 222 22223445554 46788999988 3 466777755
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-----EEEEecCCCceeeeeecCcceeEEEEC-C
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-----CKVWSLLKGRLLRNIVFPSVIDAIALD-P 228 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~~~~i~~~~~~-~ 228 (424)
.....+..+....... ++ ..-++ ...++|+.||. +..||..+.+-...-............ -
T Consensus 359 --------~~W~~~a~M~~~R~~~-~v-~~l~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 359 --------NQWTPVAPMNTKRSDF-GV-AVLDG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred --------CceeccCCccCccccc-ee-EEECC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence 2222222222211111 11 12233 78888888864 777887765543333222222222222 2
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc-----EEEEeC
Q 014475 229 AEHVFYAGSRDG------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDP 297 (424)
Q Consensus 229 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~-----i~iwd~ 297 (424)
+|.+.++|+.++ .+..||..++. |..+..+..-..... ++.-.+.+++.||.|+. |..||.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcC
Confidence 677788887554 57788887765 344444333222222 33334788888887763 777888
Q ss_pred CCCcEEEEEeccCCCeeEEEE-EecCceeeeccCCCc-----eeeccCCCC
Q 014475 298 ITHNIVRMFRLAKGPVNNILV-VRRPLYLNLGSFSNP-----HTSSRRHGS 342 (424)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~~~d~~-----i~iw~~~~~ 342 (424)
.+.+-... ..-..+...+.. .-+++..++|+.||. |..||..+.
T Consensus 499 ~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 499 ETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CCCceeEc-ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 76553332 111222222222 235566688888875 555555544
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.0058 Score=50.95 Aligned_cols=252 Identities=13% Similarity=0.179 Sum_probs=146.5
Q ss_pred CCceeeeecCCCCeeEEEECCC-CCEEEEecCCCc-EEEEEccCcceeeeeccccC--CeEEEEEccCCcEEEEeeCC--
Q 014475 70 KPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYR--AVTCLVFSEDGSFLISGSED-- 143 (424)
Q Consensus 70 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~d-- 143 (424)
.+++............++|+|. ..-++.+-.-|+ ..++|....+....+....+ ..-.-.|+|||.+|...-.|
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 3445555555667778889985 455666666666 67889888776665532211 12235699999988876443
Q ss_pred ---CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------------------CCcEE
Q 014475 144 ---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------------------DRTCK 202 (424)
Q Consensus 144 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------------------d~~v~ 202 (424)
|.|-+||.+. ....+-.+..|.-.-..+.+.+++ ..++.+.. .-.+.
T Consensus 137 ~~rGViGvYd~r~----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 137 PNRGVIGVYDARE----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred CCCceEEEEeccc----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCccEE
Confidence 6799999864 334556677787777888999998 66655432 12355
Q ss_pred EEecCCCceeeeeecC-----cceeEEEECCCCCEEEEEeCCCc-----EEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 203 VWSLLKGRLLRNIVFP-----SVIDAIALDPAEHVFYAGSRDGS-----IYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 203 iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
+.|..+++++.+...+ -.+..++..++|..++.+-..|. ..+=-...+.+. ...... ..........|
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l-~~~~~p-ee~~~~~anYi 282 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL-EFLDLP-EEQTAAFANYI 282 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC-cccCCC-HHHHHHHHhhh
Confidence 5666667666655433 46778888888876554432221 000001111000 000000 00111223557
Q ss_pred EEEEecC-CCEEE-EeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 273 TCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 273 ~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
-+++.+. ..+++ |.-..+...+||..+|..+..-.... ...++ +...-+++.+.+|.+.++..
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEEeccc
Confidence 7788876 44444 44456678899999998877544221 12223 33344566677888887743
No 369
>PHA02713 hypothetical protein; Provisional
Probab=97.86 E-value=0.0018 Score=62.11 Aligned_cols=217 Identities=9% Similarity=0.106 Sum_probs=110.2
Q ss_pred eEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecCC------CcEEEEEccCccee--eeeccccCCeEEEEEc
Q 014475 62 SILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFS 131 (424)
Q Consensus 62 ~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~ 131 (424)
.+..||..+.+.........+. .+++. -++...+.||.+ ..+..||+.+..-. ..+........ ++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~~- 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LAV- 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EEE-
Confidence 5677887766543222211111 12222 366777777753 34788898776432 22221112222 222
Q ss_pred cCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-------
Q 014475 132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR------- 199 (424)
Q Consensus 132 ~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~------- 199 (424)
-+++..+.||.++ .+..||..+. ....+..+....... +++ .-++ ...+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~---------~W~~~~~mp~~r~~~-~~~-~~~g--~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDD---------KWKMLPDMPIALSSY-GMC-VLDQ--YIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCC---------eEEECCCCCcccccc-cEE-EECC--EEEEEeCCCcccccccc
Confidence 2577888888764 3778888652 122111111111111 111 2234 6777776542
Q ss_pred ----------------cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCC------cEEEEEcCC-CCCCC
Q 014475 200 ----------------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG------SIYIAALNA-ESPST 254 (424)
Q Consensus 200 ----------------~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~ 254 (424)
.+..||..+.+-...-. .+..-.+++ .-++++.++|+.++ .+..||..+ ..
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--- 492 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--- 492 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence 47778877654322211 111111122 22566777776542 367788876 43
Q ss_pred CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC--cEEEEeCCCCcEE
Q 014475 255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG--MVRVWDPITHNIV 303 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~ 303 (424)
|..+..+.........+. ..+.+.++|+.+| .+..||+.+.+=.
T Consensus 493 ----W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 493 ----WELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ----eeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccccccc
Confidence 454554443333333333 3488889999888 6777887766533
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.85 E-value=0.0069 Score=54.89 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=59.0
Q ss_pred eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEec-----------------
Q 014475 261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRR----------------- 321 (424)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~----------------- 321 (424)
....+.+....+.+++.+| +++.++.+.=|.|.++|+.++..++.+++..+. +.-+.....
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 3445556667799999999 888888888899999999999999988876542 111111111
Q ss_pred Ccee-eeccCCCceeeccCCCCCC
Q 014475 322 PLYL-NLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 322 ~~~l-~~~~~d~~i~iw~~~~~~~ 344 (424)
..+| +-+-.-|.|-+|.++.+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCE
Confidence 1233 3466788899999986643
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0001 Score=67.38 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE-EEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
....+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 35578899999999999999999999999987 777888887777777 9999999999999999999999999764
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=5e-05 Score=60.72 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=99.4
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (424)
..+...+.+|.|+-++++..+....-. +... .....-+..+++|+.+|.|++|...... ........
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g--------~~~d~~~s 99 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG--------AHSDRVCS 99 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccc--------hHHHhhhc
Confidence 345566778899888887544322111 1111 2222356779999999999999988432 11111111
Q ss_pred cCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeec--cCCCceeeccCCCC
Q 014475 268 HSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG--SFSNPHTSSRRHGS 342 (424)
Q Consensus 268 ~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~--~~d~~i~iw~~~~~ 342 (424)
-...|-++.-.- +.+..+++.||.|+.|++..++.+.....|. .++..+..+..+++|+.+ |.|..++.|++...
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 223333322222 4588899999999999999999999888888 688888888888899888 99999999998855
Q ss_pred CCCCC
Q 014475 343 QLPPP 347 (424)
Q Consensus 343 ~~~~~ 347 (424)
.-..+
T Consensus 180 ~d~~~ 184 (238)
T KOG2444|consen 180 KDESP 184 (238)
T ss_pred hccCc
Confidence 44333
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.79 E-value=0.0025 Score=45.36 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=69.3
Q ss_pred eEEEEEcc---C-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 125 VTCLVFSE---D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 125 i~~~~~~~---~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
|+++++.. + .+.|++|+.|..|++|+-+. .+..+. -...|++++-... ..++.+..+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEIT-ETDKVTSLCSLGG---GRFAYALANGT 64 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEe-cccceEEEEEcCC---CEEEEEecCCE
Confidence 66777764 2 25799999999999998643 333333 3456666666555 57899999999
Q ss_pred EEEEecCCCceeeeeecCcceeEEEECC-C--C-CEEEEEeCCCcEE
Q 014475 201 CKVWSLLKGRLLRNIVFPSVIDAIALDP-A--E-HVFYAGSRDGSIY 243 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~dg~i~ 243 (424)
|-+|+- .+.+..++....+.++++.. + | .-|++|-.+|.|-
T Consensus 65 VGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999985 34455555555577766644 2 2 3688898898774
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=6.5e-05 Score=42.55 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777788999999999999999999999999999996
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.74 E-value=0.012 Score=56.65 Aligned_cols=215 Identities=7% Similarity=0.080 Sum_probs=106.0
Q ss_pred cEEEEEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCC
Q 014475 103 DIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 103 ~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
.+..||..+++-. ..+...... .+++. -++..++.|+.+ ..+..||+.+. ....+..+...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n---------~W~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK---------IHVELPPMIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC---------eEeeCCCCcch
Confidence 5778888776432 222211111 22232 256777787754 23667887552 11111111111
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeeecCcce--eEEEECCCCCEEEEEeCCC-------
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDG------- 240 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg------- 240 (424)
.... ++ ..-++ ...+.|+.++ .+..||..+.+-...-..+.+. .+++ .-++...+.|+.++
T Consensus 342 R~~~-~~-~~~~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 342 RCRF-SL-AVIDD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hhce-eE-EEECC--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccc
Confidence 1111 12 22344 6777777654 4788998765433221111111 1111 12677777777542
Q ss_pred ----------------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC------CcEEEEeCC
Q 014475 241 ----------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED------GMVRVWDPI 298 (424)
Q Consensus 241 ----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d------g~i~iwd~~ 298 (424)
.+..||..+.. |..+..+....... +++...+.+.+.|+.+ ..+..||..
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccceEEEECCCCCe-------EeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 46677776653 33333332211111 2333336777777754 246789988
Q ss_pred C-C--cEEEEEeccCCCeeEEEEEecCceeeeccCCC--ceeeccCCCCC
Q 014475 299 T-H--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQ 343 (424)
Q Consensus 299 ~-~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~--~i~iw~~~~~~ 343 (424)
+ . ..+..+........ ...-+++..++|+.|+ .+-.+|..+.+
T Consensus 489 ~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 489 TYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence 6 3 33333332222222 2223778889999888 56666665554
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.71 E-value=0.02 Score=48.03 Aligned_cols=181 Identities=15% Similarity=0.090 Sum_probs=111.5
Q ss_pred CeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 124 AVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
....+.|..++.++-+.+.-| .|+.+|+.++... ....+.. .----.++...+ ....-.-.++..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~---------~~~~l~~-~~FgEGit~~~d---~l~qLTWk~~~~ 112 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL---------QSVPLPP-RYFGEGITILGD---KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE---------EEEE-TT-T--EEEEEEETT---EEEEEESSSSEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE---------EEEECCc-cccceeEEEECC---EEEEEEecCCeE
Confidence 345688877888888888777 6889999774321 1111111 111122333322 455556678999
Q ss_pred EEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec--cc---CcCeEEEE
Q 014475 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DH---SKAVTCLA 276 (424)
Q Consensus 202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~---~~~i~~~~ 276 (424)
.+||..+.+.+..+..+..-..++ .++..|+.+.....++.+|..+.. ....+. .. -..++-+.
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~---------~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK---------EVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S---------EEEEEE-EETTEE---EEEEE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc---------eEEEEEEEECCEECCCcEeEE
Confidence 999999999999998777777777 467778888778889999987643 222221 12 23455566
Q ss_pred ecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec---------------cCCCeeEEEEEecCcee-eec
Q 014475 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---------------AKGPVNNILVVRRPLYL-NLG 328 (424)
Q Consensus 277 ~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~l~~s~~~~~l-~~~ 328 (424)
+-.|...|=.=....|...|..+|+.+..+.. ...-.+.+++.|....| +||
T Consensus 182 ~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 YINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66565555555667788889999998887641 12457899999876555 555
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=0.00011 Score=41.58 Aligned_cols=38 Identities=42% Similarity=0.820 Sum_probs=33.5
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
+....+..|...|.++.|.++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.71 E-value=0.042 Score=51.06 Aligned_cols=244 Identities=14% Similarity=0.137 Sum_probs=122.4
Q ss_pred eeEEEECCCCCEEEEe-cCCC----cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC-----------cE
Q 014475 83 IKPIAANSHGTYIAGG-GQSG----DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-----------CV 146 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----------~i 146 (424)
+....+||+|+++|.+ +..| .++++|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999999865 2333 49999999997665321111 123499999988776654332 37
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE-EeCC---CcEEEEecCCC-----ceeeeeec
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASED---RTCKVWSLLKG-----RLLRNIVF 217 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~d---~~v~iwd~~~~-----~~~~~~~~ 217 (424)
+.|.+.+... ....+............+..+.++ ++++. .... ..+.+.|+..+ +.......
T Consensus 205 ~~~~~gt~~~-------~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 205 YRHKLGTPQS-------EDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp EEEETTS-GG-------G-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred EEEECCCChH-------hCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 8888866321 111222222222224566777777 55553 3332 34777888764 22232333
Q ss_pred Cccee-EEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecCCCEEEEeCCCC-
Q 014475 218 PSVID-AIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYSTGDLLISGSEDG- 290 (424)
Q Consensus 218 ~~~i~-~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~l~t~~~dg- 290 (424)
...+. .+... .+.+++... ..+.|...++...... .....+..+.. .+..+....+.+++..-.++
T Consensus 276 ~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 276 EDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS 348 (414)
T ss_dssp SSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE
T ss_pred CCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEEECCEEEEEEEECCc
Confidence 33333 33333 444444332 2346666676665310 11113444444 45555544344555544454
Q ss_pred -cEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceee--ecc--CCCceeeccCCCCC
Q 014475 291 -MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLN--LGS--FSNPHTSSRRHGSQ 343 (424)
Q Consensus 291 -~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~--~~~--~d~~i~iw~~~~~~ 343 (424)
.|+++++..+.....+.. ..+.|..+...+++..+. ..| .-+++.-+|+.+++
T Consensus 349 ~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 349 SRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 488999884455555443 334455555555544332 222 22345555555443
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.69 E-value=0.064 Score=52.65 Aligned_cols=311 Identities=15% Similarity=0.128 Sum_probs=172.9
Q ss_pred EEeecCCCCCc-eEEEeCCCCceEEEe-eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----
Q 014475 4 LIASSSVADTG-IGCWDLESGAEQLRY-KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK----- 76 (424)
Q Consensus 4 ~lat~~~~dg~-i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~----- 76 (424)
++|.|. .+.. ++|--......+... .....-++.+.... +-.+..+|.++..| |.+.-+-++.......
T Consensus 550 ~~aVG~-Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~--~e~d~~yLlvalgd-G~l~~fv~d~~tg~lsd~Kk~ 625 (1096)
T KOG1897|consen 550 LLAVGL-WSDISMILTFLPDLILITHEQLSGEIIPRSILLTT--FEGDIHYLLVALGD-GALLYFVLDINTGQLSDRKKV 625 (1096)
T ss_pred EEEEEe-ecceEEEEEECCCcceeeeeccCCCccchheeeEE--eeccceEEEEEcCC-ceEEEEEEEcccceEcccccc
Confidence 455555 3333 233333333333222 23334556677666 77778899999887 9988777664433221
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEE-EEcc--CCcEEEEeeCCCcEEEEeCC
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCL-VFSE--DGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~-~~~~--~~~~l~s~~~dg~i~iwd~~ 152 (424)
..-..|+.--.|+..++.-+-+..|.-..+|.. +++...+ +. -..+..+ .|+. -...++++.. +.+++..++
T Consensus 626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls--~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid 701 (1096)
T KOG1897|consen 626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS--LKEVNHMCPFNSDAYPDSLASANG-GALTIGTID 701 (1096)
T ss_pred ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc--hHHhhhhcccccccCCceEEEecC-CceEEEEec
Confidence 223556666677664443333445666667763 3433322 21 1112222 2322 1234555544 467777765
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-----------C---CcEEEEecCCCceeeeeecC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----------D---RTCKVWSLLKGRLLRNIVFP 218 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----------d---~~v~iwd~~~~~~~~~~~~~ 218 (424)
.. ....+++..-+. ....+++.+.. ..+.+.+. . ..++++|-++.+.+...+..
T Consensus 702 ~i---------qkl~irtvpl~~-~prrI~~q~~s--l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~ 769 (1096)
T KOG1897|consen 702 EI---------QKLHIRTVPLGE-SPRRICYQESS--LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE 769 (1096)
T ss_pred ch---------hhcceeeecCCC-ChhheEecccc--eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc
Confidence 42 222223322222 22334444322 22222211 1 24777887777666555422
Q ss_pred -----cceeEEEECCC-CCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCE
Q 014475 219 -----SVIDAIALDPA-EHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL 282 (424)
Q Consensus 219 -----~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 282 (424)
..+.++.|..+ +.++++|+. .|+|.++....... .+.+.... -.+.+.++..-.|++
T Consensus 770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~-v~Gav~aL~~fngkl 842 (1096)
T KOG1897|consen 770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETV-VKGAVYALVEFNGKL 842 (1096)
T ss_pred ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeee-eccceeehhhhCCeE
Confidence 24555557776 677777762 47788888776211 12222221 234455554333555
Q ss_pred EEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 283 l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+|. -+..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+.+.+-..+..+
T Consensus 843 lA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 843 LAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred EEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 554 45689999999998888888888999999999999999999888877766555443
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.63 E-value=0.0088 Score=57.39 Aligned_cols=226 Identities=16% Similarity=0.178 Sum_probs=121.8
Q ss_pred CCCccccCCCCc-----eeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCC-C-----cEEEEEccCccee
Q 014475 49 SSQLREQPSASS-----GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQS-G-----DIYMWEVASGRLL 115 (424)
Q Consensus 49 ~~~~l~~~~~~~-----g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d-g-----~v~iwd~~~~~~~ 115 (424)
.+.++++||... ..+..+|..+++...... ....-.++++. ++...++||.| | ++..||..+++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 344555665552 578888887764332211 22233344443 46788888888 3 4788888777533
Q ss_pred e--eeccccCCeEEEEEccCCcEEEEeeCCCc-----EEEEeCCcccchhcccccccceEEeecCCcCceeEEE-EEEcC
Q 014475 116 K--KWHAHYRAVTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV-IGYGG 187 (424)
Q Consensus 116 ~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 187 (424)
. .+............ +|...++|+.||. +-.||..+ .+...+..... ...... ..-++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~---------~~W~~va~m~~---~r~~~gv~~~~g 428 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVT---------NKWTPVAPMLT---RRSGHGVAVLGG 428 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCC---------CcccccCCCCc---ceeeeEEEEECC
Confidence 2 22222222222222 6888999999875 55677654 33332222222 122222 22334
Q ss_pred ceeEEEEEeCCC------cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCC
Q 014475 188 VSATIVSASEDR------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPST 254 (424)
Q Consensus 188 ~~~~l~~~~~d~------~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~ 254 (424)
...++|+.++ ++..||..+.+-...-. ....-..++. -++.++++|+.|+ ++..||..+..
T Consensus 429 --~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~--- 502 (571)
T KOG4441|consen 429 --KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ--- 502 (571)
T ss_pred --EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc---
Confidence 6777777554 57788887765433322 2211222222 2677788888776 36778887765
Q ss_pred CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc-----EEEEeCCCC
Q 014475 255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDPITH 300 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~-----i~iwd~~~~ 300 (424)
|..+..+......+..... .+...++|+.||. |..||..+.
T Consensus 503 ----W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 503 ----WTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ----eeEcccCccccccccEEEE-CCEEEEEecccCccccceeEEcCCCCC
Confidence 4444334333333333333 3778888887763 566665544
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00036 Score=64.02 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=78.5
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEeCCCc
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~d~~ 200 (424)
...+..+.|+|.-..+|.+..+|.|.+..++ .+.+.++..|...++ +++|.|+| +.++.|-.||+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------~qRlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~ 85 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------------WQRLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGT 85 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec------------cceeEeccCCCCccceeeeecCCC--CEEEEEecCCe
Confidence 3467889999999999999999999998872 445666776777777 99999998 99999999999
Q ss_pred EEEEecCCCceeee--eecCcceeEEEECC
Q 014475 201 CKVWSLLKGRLLRN--IVFPSVIDAIALDP 228 (424)
Q Consensus 201 v~iwd~~~~~~~~~--~~~~~~i~~~~~~~ 228 (424)
|++.|+.++..+.. +.....|.++-|+|
T Consensus 86 I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEEccCCCceeccccccccchheeeccc
Confidence 99999999988887 44677888888874
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.011 Score=56.74 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=102.8
Q ss_pred CceEEecceeecCCCccccCCC-----Cce--eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--------
Q 014475 37 HGLACVGQRFLASSQLREQPSA-----SSG--SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS-------- 101 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~-----~~g--~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 101 (424)
..+...+ .+|+|+.++.... +|+ .|.+++........ ........-.|+|||..+++....
T Consensus 350 ~~vsspa--iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAA--LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccce--ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3455556 9999998877651 123 55555653332222 223358889999998877776422
Q ss_pred ----CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcC
Q 014475 102 ----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTL 176 (424)
Q Consensus 102 ----g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~ 176 (424)
+.+.+.+++.++... ...+.|..+.|+|||..++... +|.|.+=-+....... . .......+ ..-..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~---~l~~~~~l~~~l~~ 497 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-Y---ALTNPREVGPGLGD 497 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-e---eecccEEeecccCC
Confidence 233333444433322 2346799999999999988765 4777773332210000 0 00001112 22333
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
.+.++.|..++ . |+.+..++...+|.+.- |.....+. ...++..++-+++ .+++...++.+.+
T Consensus 498 ~~~~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 498 TAVSLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccccceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 45778898887 5 44555555444554431 22222212 2455666666653 4666666664433
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.00013 Score=58.43 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=57.0
Q ss_pred eEEEEEeCCCcEEEEecCCC-ceeeeee-cCcce-eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 190 ATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVI-DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
..+++|+.+|.|.+|..... ....... ....| ..+..-.++.+.++++.+|.|+.|++.... .+....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---------~~g~~g 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---------VLGYVG 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc---------eeeeec
Confidence 67899999999999987621 1111111 11222 222333356688999999999999998863 333344
Q ss_pred ccC-cCeEEEEecC-CCEEEEe--CCCCcEEEEeCC
Q 014475 267 DHS-KAVTCLAYST-GDLLISG--SEDGMVRVWDPI 298 (424)
Q Consensus 267 ~~~-~~i~~~~~~~-~~~l~t~--~~dg~i~iwd~~ 298 (424)
.|. .++.....+. +++++.+ |.|..++.|++.
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 444 3333333333 4444444 445555555544
No 384
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.48 E-value=0.026 Score=45.84 Aligned_cols=220 Identities=12% Similarity=0.121 Sum_probs=118.6
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC--CEEEEe-cCCCcEEEEEccC--cceeeee--
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG--TYIAGG-GQSGDIYMWEVAS--GRLLKKW-- 118 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~-~~dg~v~iwd~~~--~~~~~~~-- 118 (424)
|.-..+.|.-..-..|.|+-||+...+.........++..+.+--.+ +.++++ +..-.|.-||... -...+++
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e 101 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE 101 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence 33333333333333377777888876655444444444444443222 233333 3222344566322 2222332
Q ss_pred -c--cccCCeEEEEEccCCcEEEEeeCC---------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 119 -H--AHYRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 119 -~--~~~~~i~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
+ ......+.-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.+
T Consensus 102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------------~v~~i~~~v~IsNgl~Wd~d 168 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------------QVELIWNCVGISNGLAWDSD 168 (310)
T ss_pred cCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-------------CceeeehhccCCcccccccc
Confidence 1 123455667788999985432222 3444444311 11111122223356778766
Q ss_pred CceeEEEEEeCCCcEEEEe--cCCCce-----eeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475 187 GVSATIVSASEDRTCKVWS--LLKGRL-----LRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd--~~~~~~-----~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (424)
.. .+.++-+.+-.|.-|| ..+|.. +..+.. +...-.+++..+|.+.++.-+.++|...|..++
T Consensus 169 ~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---- 243 (310)
T KOG4499|consen 169 AK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---- 243 (310)
T ss_pred Cc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC----
Confidence 53 4455566677787777 444432 222221 112335566778999999999999999999998
Q ss_pred CCcCceeeeeecccCcCeEEEEecC---CCEEEEeCC
Q 014475 255 SSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSE 288 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~ 288 (424)
+.+.++.-....|++++|-- +-+.+|+..
T Consensus 244 -----K~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 244 -----KILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred -----cEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 56777777788999999965 334444443
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0007 Score=66.07 Aligned_cols=100 Identities=20% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 126 (424)
.+..++.+++. |.+...|+...-. .......++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 34456666665 8888888776422 22233478999999999999999999999999999999999988877776666
Q ss_pred EEEE---ccCCcEEEEeeCCCcEEEEeC
Q 014475 127 CLVF---SEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 127 ~~~~---~~~~~~l~s~~~dg~i~iwd~ 151 (424)
.+-+ ..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5544 345556888877776 5654
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00095 Score=65.18 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=81.3
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
+...-.+..++.|+..|.+...|+...- .+...-..-.++|++++|+. |..++.|-.+|.|.+||+..+++
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 3333356678999999999999988752 22223333468999999999 99999999999999999999999
Q ss_pred EEEEeccCCCeeEEEEE---ecCceeeeccCCCceeeccCC
Q 014475 303 VRMFRLAKGPVNNILVV---RRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 303 ~~~~~~~~~~v~~l~~s---~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++.+..|..|.+.+-+. .++..++++..-|. +|+..
T Consensus 165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 99999888877766554 46667788777775 56543
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0052 Score=55.64 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=95.9
Q ss_pred CCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-------EEEEeeCCCcEEEEeCCcccchhccc
Q 014475 90 SHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-------FLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 90 ~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.+.++|+ .+.....++-.|++.|+.+...+-+.. |+-+.+.|+.+ .-+.|-.|..|+-||++-.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~------- 414 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ------- 414 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc-------
Confidence 3444444 444556688899999999999987766 88888888543 2345667888999999631
Q ss_pred ccccceEEeecCC----cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-eeee-cCcceeEEEECCCCCEEEE
Q 014475 162 RASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-RNIV-FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 162 ~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~ 235 (424)
....+...++| .....|.+-..+ .++++|+.+|.|++||- .+..- ..++ ...+|..+..+.+|+++++
T Consensus 415 --~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 415 --GKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred --CcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 11112122222 223344444444 58999999999999996 44333 3333 6789999999999999887
Q ss_pred EeCCCcEEEEEcC
Q 014475 236 GSRDGSIYIAALN 248 (424)
Q Consensus 236 ~~~dg~i~i~d~~ 248 (424)
.+ +..+.+.++.
T Consensus 489 Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 489 TC-KTYLLLIDTL 500 (644)
T ss_pred ec-ccEEEEEEEe
Confidence 66 4456666653
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.28 E-value=0.034 Score=53.48 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=100.8
Q ss_pred CCeEEEEEccCCcEEEEee------CCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEE
Q 014475 123 RAVTCLVFSEDGSFLISGS------EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~------~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 194 (424)
..+...+++|+|+.++... .|+. |.+++... ....+ ..+. ..+.-.|+|++ ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------~~~~l--t~g~--~~t~PsWspDG--~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------VAVQV--LEGH--SLTRPSWSLDA--DAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------cceee--ecCC--CCCCceECCCC--CceEE
Confidence 4678899999999887655 2443 44444421 11111 1221 25666788886 55555
Q ss_pred EeC------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE---EEcCCCCCCCCCcCc
Q 014475 195 ASE------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI---AALNAESPSTSSYGM 259 (424)
Q Consensus 195 ~~~------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~ 259 (424)
... .+.+.+.+++.++... ..+..|..+.|+|||..++... ++.|++ -....+. ... .
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l--~ 486 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YAL--T 486 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eee--c
Confidence 432 2334444555444333 3456799999999999988766 477777 3322321 000 0
Q ss_pred eeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC-CcEEEEEec--cCCCeeEEEEEecCceeeeccCCCcee
Q 014475 260 HIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~ 335 (424)
.+.....+-...+..+.|.++..|+.+..++.-.+|.+.- |.....+.. ...++..++-++. .|..+..++.+.
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 1111112233446789999844455666555555565442 222222222 2456777777763 344445555443
No 389
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.21 E-value=0.17 Score=46.29 Aligned_cols=273 Identities=14% Similarity=0.075 Sum_probs=142.6
Q ss_pred EEEeecCCCCCceEEEeCCCCc-----eEEEeeCCCCCCCceEEec-ceeecC--CCccccCCCCceeEEEEECCCCc--
Q 014475 3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-QRFLAS--SQLREQPSASSGSILYWSWSKPQ-- 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~-- 72 (424)
..+++|+ ..|.++|++...+. .+.+.+ .. .+|..++ .+|.+. ...||+-.. ..+.+|.+....
T Consensus 38 d~IivGS-~~G~LrIy~P~~~~~~~~~lllE~~-l~---~PILqv~~G~F~s~~~~~~LaVLhP--~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 38 DKIIVGS-YSGILRIYDPSGNEFQPEDLLLETQ-LK---DPILQVECGKFVSGSEDLQLAVLHP--RKLSVYSVSLVDGT 110 (418)
T ss_pred cEEEEec-cccEEEEEccCCCCCCCccEEEEEe-cC---CcEEEEEeccccCCCCcceEEEecC--CEEEEEEEEecCCC
Confidence 4688899 99999999985443 222221 11 3344444 235443 334555444 688888873211
Q ss_pred ------e--eeeecC--CCCeeEEEECC----C-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 73 ------V--EVKSLP--AEPIKPIAANS----H-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 73 ------~--~~~~~~--~~~v~~~~~s~----~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
. .....| ......+..-| . ..++++=+.||.+.+|+-+.-.....+.. .--...+.+.+....|
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 1 111112 22333333322 2 36788889999999999665544444443 3334568888888889
Q ss_pred EEeeCCCcEEEEeCCcccchhccc------------ccccceEEeecCCcCceeEEEEEEc--CceeEEEEEeCCCcEEE
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQ------------RASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSASEDRTCKV 203 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~i 203 (424)
++++.+..+..|............ ..+..+-.++. -...+.++..... .. ..++.-+ ..++.+
T Consensus 190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~-~~IvvLg-er~Lf~ 266 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSE-SDIVVLG-ERSLFC 266 (418)
T ss_pred EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCC-ceEEEEe-cceEEE
Confidence 999999899999764422211100 00111111111 1223334433332 11 2333333 345666
Q ss_pred EecCCCceeeeeecCcceeEEEE-------CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 204 WSLLKGRLLRNIVFPSVIDAIAL-------DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 204 wd~~~~~~~~~~~~~~~i~~~~~-------~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
.+- +|+.......+....+++. .|+ ...+++++.++.+.+|.=.+- +-..+....+| ++
T Consensus 267 l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L-----------~WsA~l~~~PV-al 333 (418)
T PF14727_consen 267 LKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL-----------VWSAQLPHVPV-AL 333 (418)
T ss_pred EcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE-----------EEecCCCCCCE-EE
Confidence 664 4555444444444444331 112 125888999999998864432 11111111222 33
Q ss_pred Ee---cC-CCEEEEeCCCCcEEEEeCCC
Q 014475 276 AY---ST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 276 ~~---~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
.. .. ...|++-+.+|.+.+--+-|
T Consensus 334 ~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 334 SVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 32 23 66777777888777765554
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.028 Score=47.01 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=121.5
Q ss_pred eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeee--ecCCCCeeEEEE
Q 014475 15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVK--SLPAEPIKPIAA 88 (424)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~ 88 (424)
..++|...++...++....... ---. ..|+|||.+|...-.| -|.|-|||.+.+-...- ..|.-....+.+
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RH-fyGH--Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l 169 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRH-FYGH--GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL 169 (366)
T ss_pred EEEECCCCCcCcEEEecccCce-eecc--cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE
Confidence 4578877777666654332210 0000 1299999998876433 28899999885433222 234555678899
Q ss_pred CCCCCEEEEecC------------------CCcEEEEEccCcceeee--ec--cccCCeEEEEEccCCcEEEEeeCCCcE
Q 014475 89 NSHGTYIAGGGQ------------------SGDIYMWEVASGRLLKK--WH--AHYRAVTCLVFSEDGSFLISGSEDGCV 146 (424)
Q Consensus 89 s~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i 146 (424)
.+||+.++.+.. .-++.+.|..+|+.+.. +. .+.-.|..+...+||...+-+-..|.-
T Consensus 170 m~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 170 MADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred ecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 999999988643 12244555556655433 22 345567888888777655544332210
Q ss_pred EEEeCCcccchhcccccccceEE-------eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc
Q 014475 147 RIWSLLTVFEECESQRASHLYLH-------SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 219 (424)
. |. ........+...+. ........|-+++.+.+.. -..+|+-..+...+||..++..+..-....
T Consensus 250 ~--d~----ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g-lV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 250 N--DL----PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG-LVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred c--cC----CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC-eEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 0 00 00000000000011 0111234566677765541 344455556678899999999876654322
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
+.-.-+...-+++.+.+|.+.++.-..
T Consensus 323 ---aaGva~~~~gf~vssg~G~~~~~s~~~ 349 (366)
T COG3490 323 ---AAGVAAAKGGFAVSSGQGRIIFYSRAA 349 (366)
T ss_pred ---cccceeccCceEEecCCceEEeccccc
Confidence 112233455577788888888874433
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.083 Score=44.68 Aligned_cols=168 Identities=7% Similarity=0.111 Sum_probs=111.7
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
...+.++.|+|+.+.|++......-.|+=..+|+.+.++.- .-.....+.+..++++.++--.++.+.++.+.......
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 44599999999999998888888877877788998887743 12345678898888888888889999998876532222
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------cCcceeEEEEC
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------FPSVIDAIALD 227 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~i~~~~~~ 227 (424)
..... ...+......+...-.++|.+.. ..|+.+=+-.-+.||............ .-..+.++.++
T Consensus 165 ~~~~~-~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 165 SAKVQ-KIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred eccce-EEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11111 11122222235667789999987 777777777778887765332111111 11346777888
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCC
Q 014475 228 P-AEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 228 ~-~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+ .+.+++.+..++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 7 4556666667777777777664
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.11 E-value=0.14 Score=43.69 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=92.2
Q ss_pred ceEEecceeecCCCccccCC--CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEE-ccCcce
Q 014475 38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE-VASGRL 114 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~--~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd-~~~~~~ 114 (424)
.+...+ .+++++.++... .+...+.++.......... ....+..-.|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~A--vS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPA--VSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceE--ECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 566667 999999888766 3335666666544333222 445888889999988777776666666664 333322
Q ss_pred e-eeec--cccCCeEEEEEccCCcEEEEee---CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475 115 L-KKWH--AHYRAVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (424)
Q Consensus 115 ~-~~~~--~~~~~i~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (424)
. .... .-...|..+.++|||..++... .++.|.+=-+........ ..-.............++++.|.++.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~~~~~~~~~~~v~~v~W~~~~- 177 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGPRRVAPPLLSDVTDVAWSDDS- 177 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccceEecccccCcceeeeecCCC-
Confidence 2 1121 1112899999999999887665 357777776543211100 00111122222345688999999987
Q ss_pred eeEEEEEeCCC
Q 014475 189 SATIVSASEDR 199 (424)
Q Consensus 189 ~~~l~~~~~d~ 199 (424)
.+++.+...+
T Consensus 178 -~L~V~~~~~~ 187 (253)
T PF10647_consen 178 -TLVVLGRSAG 187 (253)
T ss_pred -EEEEEeCCCC
Confidence 5555554433
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.14 Score=43.30 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=105.9
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCceeEEEEEe
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
.+-...+.++.|+|+.+.|++......-.++=-.+ ...+.++ .+ -...-.+.+..++ .+.++--
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-----------GdlirtiPL~g-~~DpE~Ieyig~n--~fvi~dE 147 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-----------GDLIRTIPLTG-FSDPETIEYIGGN--QFVIVDE 147 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecC-----------CceEEEecccc-cCChhHeEEecCC--EEEEEeh
Confidence 44455699999999999888887766655553322 2222222 22 1222345666555 6777767
Q ss_pred CCCcEEEEecCCCceee-----eee-----c-CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC-cCceeeee
Q 014475 197 EDRTCKVWSLLKGRLLR-----NIV-----F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGS 264 (424)
Q Consensus 197 ~d~~v~iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~ 264 (424)
.++.+.++.+....... .+. + ......++|+|.+..|+.+-...-+.||.+......... ....+...
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 78888887766442211 111 2 456789999999999999888887888777643211000 00000000
Q ss_pred ecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 265 LSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
..-.-..|.++.|++ +.+++-+.+++.+.-.|.. |..+..+..+
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~ 273 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLT 273 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEec
Confidence 001124577888887 7788888888888888854 6666665543
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.06 E-value=0.0027 Score=37.68 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 114 (424)
...+|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999999999999999999998 5543
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.0092 Score=59.03 Aligned_cols=155 Identities=12% Similarity=0.016 Sum_probs=94.0
Q ss_pred CeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 124 AVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
+|..+...+|+...++. +.+-.|..||+++..........................++.|+|.-. ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 45555556676554433 334478999997754433222111111112222334456677887654 455667778888
Q ss_pred EEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC
Q 014475 202 KVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST 279 (424)
Q Consensus 202 ~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 279 (424)
++..+.... ....+......++++|+|.|+.+++|-..|++..|......... +..... ....|.++.|-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-------ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-------IPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-------ccCCCcCCCcceeEEEEec
Confidence 888765332 33344567789999999999999999999999998876542111 111111 147789999977
Q ss_pred -CCEEEEe
Q 014475 280 -GDLLISG 286 (424)
Q Consensus 280 -~~~l~t~ 286 (424)
..++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 5555543
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.04 E-value=0.13 Score=41.93 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=83.8
Q ss_pred cCceeEEEEEEcCceeEEEEEeC----------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE-EeCCCcEE
Q 014475 175 TLRITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIY 243 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~ 243 (424)
+.+.++-..+|+| ++ ..|.. .|.++.|-.. ++.......-.--+.++|+.+.+.++. -+.+-.|.
T Consensus 108 knR~NDgkvdP~G--ry-y~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDG--RY-YGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCC--ce-eeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 3445556677777 55 33332 2334444321 222222223344567889887766654 45666786
Q ss_pred EEE--cCCCCCCCCCcCceeeeeecc----cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 244 IAA--LNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 244 i~d--~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
-|| ..++...... .+..++. .....-.++... |++.++.-..++|...|..+|+.+.+++.....|+++
T Consensus 184 a~dyd~~tG~~snr~----~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRK----VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcc----eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 677 5554433321 1222211 111223345555 8888888889999999999999999999999999999
Q ss_pred EEEec
Q 014475 317 LVVRR 321 (424)
Q Consensus 317 ~~s~~ 321 (424)
+|--.
T Consensus 260 cFgGk 264 (310)
T KOG4499|consen 260 CFGGK 264 (310)
T ss_pred EecCC
Confidence 99743
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.01 E-value=0.17 Score=46.17 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=54.3
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC----eE-------------EEEecC--
Q 014475 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VT-------------CLAYST-- 279 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----i~-------------~~~~~~-- 279 (424)
..+.+++.+|.+++.++...-|+|.++|+..... +..+++-.+. +. ...-.+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---------vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---------VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---------hhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 4588999999999999988889999999988743 2222221110 00 000000
Q ss_pred CC-EEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 280 GD-LLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 280 ~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
.. +++-+-.-|.|.||.+++|..+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 11 3344567899999999999998888753
No 398
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.98 E-value=0.25 Score=44.15 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=108.0
Q ss_pred EECCCCCEEEEec-CCC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 87 AANSHGTYIAGGG-QSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 87 ~~s~~~~~l~~~~-~dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
+|.+||+.|+.++ .+| .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-------- 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-------- 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc--------
Confidence 4677886665544 344 57778888887665544322223346677888877665555688888987732
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEe----------------------CCCcEEEEecCCCceeeeeecCcce
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS----------------------EDRTCKVWSLLKGRLLRNIVFPSVI 221 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~----------------------~d~~v~iwd~~~~~~~~~~~~~~~i 221 (424)
...+. ......+-...|..+.+...++-.- -...|.-.|+.+|+....+.....+
T Consensus 114 -~~~vy--~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 114 -ERVVY--EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp -EEEEE--E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred -EEEEE--ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence 22222 2233333334454333323332211 1234666788888877777778888
Q ss_pred eEEEECCCCCEEEEEeCCC-----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE-----eCCCC
Q 014475 222 DAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS-----GSEDG 290 (424)
Q Consensus 222 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t-----~~~dg 290 (424)
..+.++|....+++-+.+| .-+||-++...... +++.... ....+..=-|.| |..|.- ++.+.
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-----~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-----KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-----eeeecCC-CCcccccccccCCCCEEEEEeecCCCCce
Confidence 9999999766666655443 23666665543211 1111111 112233334666 554332 23355
Q ss_pred cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
.|.-+|+.+++....... .+...+.-++||++++-=+.|
T Consensus 265 ~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 677788888765433222 245566667888887654443
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=96.85 E-value=0.19 Score=47.66 Aligned_cols=183 Identities=11% Similarity=0.057 Sum_probs=88.9
Q ss_pred CCCEEEEecCCC-----cEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhccc
Q 014475 91 HGTYIAGGGQSG-----DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQ 161 (424)
Q Consensus 91 ~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 161 (424)
++..+++||.++ .+..||..+++-.. .+.........+. -++...+.|+.++ .+..||..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~-------- 340 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGD-------- 340 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCC--------
Confidence 456667777543 47778887764322 2222222222222 3677778887643 467777643
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCCCceeeeeec--CcceeEEEECCCCCEEEEE
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~ 236 (424)
.....+..+..... ......-++ ...+.|+.++ .+..||.++.+-...-.. +..-.+++ .-+++..+.|
T Consensus 341 -n~W~~~~~l~~~r~--~~~~~~~~g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G 414 (480)
T PHA02790 341 -AAWVNMPSLLKPRC--NPAVASINN--VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG 414 (480)
T ss_pred -CeEEECCCCCCCCc--ccEEEEECC--EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC
Confidence 11111111211111 111122344 6777777543 477888876543322111 11111221 2356666666
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH 300 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~ 300 (424)
|...+||..+.. |..+..+....... +++...+.+.+.||.+ ..+..||..++
T Consensus 415 ---G~~e~ydp~~~~-------W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 ---RNAEFYCESSNT-------WTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ---CceEEecCCCCc-------EeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 356788886653 34443332222222 2333347788888764 34566666544
No 400
>PHA03098 kelch-like protein; Provisional
Probab=96.82 E-value=0.14 Score=49.41 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=88.6
Q ss_pred CCCCEEEEecCCC------cEEEEEccCcceeee--eccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccc
Q 014475 90 SHGTYIAGGGQSG------DIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFE 156 (424)
Q Consensus 90 ~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 156 (424)
.++..++.||.++ .+..||..+.+-... +.........+. -+++.++.||.++ .+..||..+.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 3566677776543 477888877654221 111112222222 2577778887653 4667777542
Q ss_pred hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC------CcEEEEecCCCceeeeeecC--cceeEEEECC
Q 014475 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP--SVIDAIALDP 228 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~ 228 (424)
.......+...... .+++ ..++ ...+.|+.+ ..+..||+.+.+-...-..+ ..-.+++ ..
T Consensus 369 -------~W~~~~~lp~~r~~-~~~~-~~~~--~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~ 436 (534)
T PHA03098 369 -------KWREEPPLIFPRYN-PCVV-NVNN--LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YH 436 (534)
T ss_pred -------ceeeCCCcCcCCcc-ceEE-EECC--EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EE
Confidence 11111111111111 1112 2233 666777632 35788998765433221111 1111222 23
Q ss_pred CCCEEEEEeCCC--------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEE
Q 014475 229 AEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVW 295 (424)
Q Consensus 229 ~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iw 295 (424)
++..++.|+.++ .+.+||..+.. |..+..+.........+.+ .+.+++.|+.+ ..+.+|
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEE
Confidence 566666665432 37888887754 2222222111111122222 36677777654 357777
Q ss_pred eCCCC
Q 014475 296 DPITH 300 (424)
Q Consensus 296 d~~~~ 300 (424)
|..+.
T Consensus 509 d~~~~ 513 (534)
T PHA03098 509 DDKTN 513 (534)
T ss_pred eCCCC
Confidence 76654
No 401
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.80 E-value=0.63 Score=46.17 Aligned_cols=301 Identities=12% Similarity=0.085 Sum_probs=144.6
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee--ecCCCCeeEEEECCC
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSH 91 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~--~~~~~~v~~~~~s~~ 91 (424)
.||+.+-. .....+.. +.+.++.. .+.+...++.++.+ +.+...++........ ......|.|+.++|-
T Consensus 471 ~iRl~ss~--~~~~~W~~----p~~~ti~~--~~~n~sqVvvA~~~-~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~ 541 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRP----PGKITIGV--VSANASQVVVAGGG-LALFYLEIEDGGLREVSHKEFEYEVACLDISPL 541 (1096)
T ss_pred cEEEEcch--hhhhcccC----CCceEEEE--EeecceEEEEecCc-cEEEEEEeeccceeeeeeheecceeEEEecccC
Confidence 46666633 23333432 23344333 44444556666654 6666666665553322 234678999999974
Q ss_pred ---C---CEEEEecCCCcEEEEEc-cCcceeee--ecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 92 ---G---TYIAGGGQSGDIYMWEV-ASGRLLKK--WHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 92 ---~---~~l~~~~~dg~v~iwd~-~~~~~~~~--~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
. +.+++|..+..+.+.-. .+...+.. +.+ -...|.-.+|-.|..+|.++..||.+.-|.+.........
T Consensus 542 ~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd 621 (1096)
T KOG1897|consen 542 GDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD 621 (1096)
T ss_pred CCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence 2 27888887766554433 22222211 111 1234555556556889999999999887765432111000
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-C-CCEEEEEeC
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-A-EHVFYAGSR 238 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~-~~~l~~~~~ 238 (424)
.+...-...|+.--.|+..+. ..+++ ..|.-..+|..+..-....+..+..-..+.|+. . +..++. ..
T Consensus 622 -------~Kk~~lGt~P~~Lr~f~sk~~-t~vfa-~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~-~~ 691 (1096)
T KOG1897|consen 622 -------RKKVTLGTQPISLRTFSSKSR-TAVFA-LSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS-AN 691 (1096)
T ss_pred -------ccccccCCCCcEEEEEeeCCc-eEEEE-eCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE-ec
Confidence 011111233444344555442 33333 335555556543322222222222112222322 2 223333 34
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-----------CC---CcEEEEeCCCCcEE
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-----------ED---GMVRVWDPITHNIV 303 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-----------~d---g~i~iwd~~~~~~~ 303 (424)
.+.+.+..++.-... .+++.. -......+++.+ ...+.+.+ .. ..++++|-++.+.+
T Consensus 692 ~~~l~i~tid~iqkl-------~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 692 GGALTIGTIDEIQKL-------HIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred CCceEEEEecchhhc-------ceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 556777666553211 111221 123334455544 33333222 11 24777887776655
Q ss_pred EEEeccC----CCeeEEEEEec-Cceeeecc----------CCCceeeccCCC
Q 014475 304 RMFRLAK----GPVNNILVVRR-PLYLNLGS----------FSNPHTSSRRHG 341 (424)
Q Consensus 304 ~~~~~~~----~~v~~l~~s~~-~~~l~~~~----------~d~~i~iw~~~~ 341 (424)
...+... -.+.++.|..| +.++++|+ ..|.|.++....
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 5433211 14556668877 67777765 345566666554
No 402
>PRK10115 protease 2; Provisional
Probab=96.80 E-value=0.64 Score=46.14 Aligned_cols=240 Identities=9% Similarity=-0.041 Sum_probs=113.9
Q ss_pred CeeEEEECCCCCEEEEecC-----CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC------CcEEEEe
Q 014475 82 PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWS 150 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd 150 (424)
.+..+.++||+++|+.+.. .-.|++.|+.++..+...-.... ..++|.+|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677889999999887632 23489999988864322211212 459999998877665442 3577788
Q ss_pred CCcccchhcccccccceEEeecCCcCcee-EEEEEEcCceeEEEEEe---CCCcEEEEecC--CCceeeeeecCcceeEE
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSAS---EDRTCKVWSLL--KGRLLRNIVFPSVIDAI 224 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~---~d~~v~iwd~~--~~~~~~~~~~~~~i~~~ 224 (424)
+.++.. ....+. ........ ....+.++ .+++..+ .++.+.+++.. +++....+.....+..-
T Consensus 206 lgt~~~-------~d~lv~--~e~~~~~~~~~~~s~d~--~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (686)
T PRK10115 206 IGTPAS-------QDELVY--EEKDDTFYVSLHKTTSK--HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYS 274 (686)
T ss_pred CCCChh-------HCeEEE--eeCCCCEEEEEEEcCCC--CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEE
Confidence 866321 111222 22122222 22222244 4433333 23568888843 34333333333222221
Q ss_pred EECCCCCEEEEEeCC--CcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEecCCCEEEEeCCCCcEEEEeCCC-
Q 014475 225 ALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT- 299 (424)
Q Consensus 225 ~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~- 299 (424)
..+.. ..++.-+.. ..-++..+.-... ..++ .+..+ ...|..+.+..+.++++...+|.-+++-+..
T Consensus 275 ~~~~~-~~ly~~tn~~~~~~~l~~~~~~~~----~~~~---~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 275 LDHYQ-HRFYLRSNRHGKNFGLYRTRVRDE----QQWE---ELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK 346 (686)
T ss_pred EEeCC-CEEEEEEcCCCCCceEEEecCCCc----ccCe---EEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC
Confidence 22323 334433332 2333433322110 0112 22233 2367777777566666666777655544332
Q ss_pred CcEEEEEe-ccCCCeeEEEEE--ecCc-eeee-cc--CCCceeeccCCCC
Q 014475 300 HNIVRMFR-LAKGPVNNILVV--RRPL-YLNL-GS--FSNPHTSSRRHGS 342 (424)
Q Consensus 300 ~~~~~~~~-~~~~~v~~l~~s--~~~~-~l~~-~~--~d~~i~iw~~~~~ 342 (424)
+..+..+. .....+..+.++ +++. ++++ .+ .-+.+..+|..+.
T Consensus 347 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 347 TREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 23344443 222223333344 3333 3332 22 3344666666544
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.76 E-value=0.38 Score=43.05 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=119.4
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcce---eeee----ccccCCeEEEEEccC----CcEEEEeeCC-------
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKW----HAHYRAVTCLVFSED----GSFLISGSED------- 143 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~----~~~l~s~~~d------- 143 (424)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4588999999987776 5589999999 44433 2222 224457899999994 4444433321
Q ss_pred -CcEEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeCCCc-------------EEEEec
Q 014475 144 -GCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASEDRT-------------CKVWSL 206 (424)
Q Consensus 144 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d~~-------------v~iwd~ 206 (424)
..|.-|....... ... .....+.... .....-..|.|.|++ .+.++.+..+. |.-.+.
T Consensus 81 ~~~v~r~~~~~~~~--~~~-~~~~l~~~~p~~~~~~H~g~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 81 DNRVVRFTLSDGDG--DLS-SEEVLVTGLPDTSSGNHNGGGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEETTSC--EEE-EEEEEEEEEES-CSSSS-EEEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred ceeeEEEeccCCcc--ccc-cceEEEEEeCCCCCCCCCCccccCCCCC--cEEEEeCCCCCcccccccccccceEEEecc
Confidence 1333344322100 000 1111111222 233445568999988 66665554332 222222
Q ss_pred CCCce-------------eeeee-cCcceeEEEECCC-CCEEEEE-eCCCcEEEEEcCCCCCC----------C------
Q 014475 207 LKGRL-------------LRNIV-FPSVIDAIALDPA-EHVFYAG-SRDGSIYIAALNAESPS----------T------ 254 (424)
Q Consensus 207 ~~~~~-------------~~~~~-~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~~----------~------ 254 (424)
. ++. ...+. .-.....++|+|. +.++++= +.++.=.|.-+..+..- .
T Consensus 156 d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 156 D-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp T-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred c-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 1 110 00111 1124567899998 6555432 22332233333222110 0
Q ss_pred ----CCcCceeeeeecccCcCeEEEEecC--------CCEEEEeCCCCcEEEEeCCCCcEEEE---E-eccCCCeeEEEE
Q 014475 255 ----SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRM---F-RLAKGPVNNILV 318 (424)
Q Consensus 255 ----~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~l~t~~~dg~i~iwd~~~~~~~~~---~-~~~~~~v~~l~~ 318 (424)
......+...+..| ..+..+.|.. +.++++.-..+.|....+..+..+.. + ......+..+++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 00001233334434 5566676653 44666666677888888765533322 2 223347999999
Q ss_pred EecCceeeeccCCCcee
Q 014475 319 VRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 319 s~~~~~l~~~~~d~~i~ 335 (424)
.|||.+.++...+|.|.
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999988888888764
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.74 E-value=0.28 Score=41.36 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=105.1
Q ss_pred eecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCe--eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc
Q 014475 46 FLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (424)
Q Consensus 46 ~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 122 (424)
|..+|.++-++|.. ...|+.+|+.+++........... ..++.. +++.....-.++...+||..+.+.+.++.- .
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~ 129 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-P 129 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--S
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-C
Confidence 76788887777655 248999999998876444332222 233333 334444456789999999999888888753 3
Q ss_pred CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~ 202 (424)
+.=+.++. +++.|+.......+..+|..+...... ..+..-...-..++.+.+. ++ ...+=.-....|.
T Consensus 130 ~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~------i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~ 198 (264)
T PF05096_consen 130 GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRT------IQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIV 198 (264)
T ss_dssp SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEE------EE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEE
T ss_pred CcceEEEc--CCCEEEEECCccceEEECCcccceEEE------EEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEE
Confidence 45577773 566676666666899999866322110 0111001112234555554 33 5555555667788
Q ss_pred EEecCCCceeeeeec----------------CcceeEEEECCCCCEEEEEeC
Q 014475 203 VWSLLKGRLLRNIVF----------------PSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 203 iwd~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~ 238 (424)
..|..+|+....+.. ..-.+.++++|....|++.+.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 888888887776631 245889999997766665553
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.34 Score=43.65 Aligned_cols=151 Identities=10% Similarity=0.087 Sum_probs=91.6
Q ss_pred eecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----e
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----K 117 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~ 117 (424)
|-.|.+..+.+... |.+.=|-+..... .......++|.++.||+|.+.+|+--.+..|.+++....+... +
T Consensus 29 FfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 29 FFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred eeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 44444444434333 6667676654432 2334467899999999999999999999999999985443322 2
Q ss_pred eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 197 (424)
.+.....|....|+.+ .-++.-+..| +-+|.... ....++..+.|+..|+-..|+++..--.++++-.
T Consensus 108 ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p----------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~ 175 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP----------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL 175 (657)
T ss_pred hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch----------hhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence 2334456899999865 4455554444 66666532 2223445567788888888888763122223324
Q ss_pred CCcEEEEecCCC
Q 014475 198 DRTCKVWSLLKG 209 (424)
Q Consensus 198 d~~v~iwd~~~~ 209 (424)
.+++.=+-++++
T Consensus 176 ~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 176 ENVLNPFHFRAG 187 (657)
T ss_pred ccccccEEEeec
Confidence 445544545444
No 406
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.3 Score=41.42 Aligned_cols=265 Identities=10% Similarity=0.015 Sum_probs=146.2
Q ss_pred CCccccCCCCceeEEEEECCCCceeeeec--CC-CCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccC
Q 014475 50 SQLREQPSASSGSILYWSWSKPQVEVKSL--PA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYR 123 (424)
Q Consensus 50 ~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~-~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~ 123 (424)
+++...+..+ .-+++.|+.++....... .. +--.++.. .|++..++..|.-+.+.|+.+.+ ....+.....
T Consensus 96 e~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCC-CceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 3444444444 678999998776544332 22 33444444 48888888766668888886543 3344444445
Q ss_pred CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
.-..++.+ |++-..+..|+-+.+-|+.+.. ....+.... ....+.++..+++. .+ ++.. +.-+.+
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~--------sPvli~~~n-~g~g~~sv~vsdnr--~y-~vvy-~egvli 237 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH--------SPVLIGSYN-TGPGTYSVSVSDNR--AY-LVVY-DEGVLI 237 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCCC--------CCeEEEEEe-cCCceEEEEecCCe--eE-EEEc-ccceEE
Confidence 55677777 6777777889999999997621 222222221 22255666655542 33 3333 334777
Q ss_pred EecCCCceeeeee--cCcceeEE-EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC
Q 014475 204 WSLLKGRLLRNIV--FPSVIDAI-ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG 280 (424)
Q Consensus 204 wd~~~~~~~~~~~--~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 280 (424)
-|..+.+....+. ....+.++ .+.-.+++.+....+.-+.+-|+.+.... .....+......-..+... +
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay-~ 310 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAY-G 310 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEe-c
Confidence 7877666444443 22222222 23335677777777777778887765311 1111111111122233322 4
Q ss_pred CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 281 DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 281 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
.++..+..+ ...+-+....+......+....+.+.+.+-+.+.+-+...++.+.+|+..
T Consensus 311 ~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 311 NYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 555555444 44455554443333333333345555666666788888899999999854
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.66 E-value=0.41 Score=47.66 Aligned_cols=240 Identities=9% Similarity=-0.015 Sum_probs=121.4
Q ss_pred CCEEEEecCCCcEEEEEccCcceeeeeccccCC--------eEEEEEcc----------------CCcEEEEeeCCCcEE
Q 014475 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--------VTCLVFSE----------------DGSFLISGSEDGCVR 147 (424)
Q Consensus 92 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------i~~~~~~~----------------~~~~l~s~~~dg~i~ 147 (424)
+..+..++.++.|.-.|.++|+.+-++...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777778889999999999988776532211 12233321 234788888899999
Q ss_pred EEeCCcccchhcccccccceEE-eecCCcC---ceeEEEEEEcCceeEEEEEeC----------CCcEEEEecCCCceee
Q 014475 148 IWSLLTVFEECESQRASHLYLH-SFTGHTL---RITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLR 213 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~~~~~~ 213 (424)
-.|.+++............... .+..... .+++--.-.+ ..++.|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~---g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG---TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC---CEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999876543221111000000 0000000 0111001112 35555542 6889999999999998
Q ss_pred eeecCcceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeeeeecccCcC-eEEEEecCCCEEEEeCCCCc
Q 014475 214 NIVFPSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYSTGDLLISGSEDGM 291 (424)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~l~t~~~dg~ 291 (424)
.+....+...- .-+.+.....++.+. ...-+|.+.+. +..-.+...+ ...-.-.++ ..-..+.
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~gl----------vy~ptGn~~pd~~g~~r~~~----~n~y~~s 415 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGL----------VYLPMGNQTPDQWGGDRTPA----DEKYSSS 415 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCe----------EEEeCCCccccccCCccccC----cccccce
Confidence 88632221110 011233222222111 23333333321 1111111110 000000011 1123566
Q ss_pred EEEEeCCCCcEEEEEeccCCCe---------eEEEEEe-cCc---eeeeccCCCceeeccCCCCCCCCCcc
Q 014475 292 VRVWDPITHNIVRMFRLAKGPV---------NNILVVR-RPL---YLNLGSFSNPHTSSRRHGSQLPPPLD 349 (424)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v---------~~l~~s~-~~~---~l~~~~~d~~i~iw~~~~~~~~~~~~ 349 (424)
|.-.|.++|+..-.++.....+ .-+.+.. +|+ .++.++.+|.+.+.|..++++.-+.+
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7778888888877766421111 1122322 553 78899999999999999888765543
No 408
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.64 E-value=0.0096 Score=35.33 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=30.3
Q ss_pred ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
..+..|..++|+|...++|.++.+|.|.++.++-
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 3567799999999999999999999999999943
No 409
>PHA03098 kelch-like protein; Provisional
Probab=96.59 E-value=0.24 Score=47.79 Aligned_cols=133 Identities=12% Similarity=0.175 Sum_probs=65.4
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCe-eEEEE
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPI-KPIAA 88 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v-~~~~~ 88 (424)
.+..||..+.+.. .+.....+.....+ ...+++..+.||.++ ..+..||..+.+.........+. .....
T Consensus 312 ~v~~yd~~~~~W~-~~~~~~~~R~~~~~----~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 312 SVVSYDTKTKSWN-KVPELIYPRKNPGV----TVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV 386 (534)
T ss_pred cEEEEeCCCCeee-ECCCCCcccccceE----EEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence 5778888776653 22222111111111 234677777777541 35777887765533221111111 11111
Q ss_pred CCCCCEEEEecCC------CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC--------cEEEEeCC
Q 014475 89 NSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--------CVRIWSLL 152 (424)
Q Consensus 89 s~~~~~l~~~~~d------g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg--------~i~iwd~~ 152 (424)
.-+++..+.||.+ ..+..||+.+++-.. .+....... ++.. .++..++.|+.++ .+.+||..
T Consensus 387 ~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 387 NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCccCCCCCcccceEEEecCC
Confidence 2356777777632 358889987654322 121111111 2222 3566777776432 37788886
Q ss_pred c
Q 014475 153 T 153 (424)
Q Consensus 153 ~ 153 (424)
+
T Consensus 465 ~ 465 (534)
T PHA03098 465 T 465 (534)
T ss_pred C
Confidence 5
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.46 E-value=0.56 Score=42.49 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=99.1
Q ss_pred EEeecCCCCCceEEEeCCC----CceEEEeeCCC-------CCCCceEEecceeecCCCccccCCCC-----ceeEEEEE
Q 014475 4 LIASSSVADTGIGCWDLES----GAEQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWS 67 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~----~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd 67 (424)
+++-+= ..+.|.|.|+.+ .+..+.+.... +.+..+. -.|+|+.++++-.+ -|.+.+.|
T Consensus 90 Li~PgL-~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~H-----clp~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 90 LILPGL-RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVH-----CLPDGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp EEEEBT-TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEE-----E-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred EEeeee-ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceee-----ecCCccEEEEeccCCCCCCCCcEEEEc
Confidence 455555 678999999884 34445554210 1111222 34677666655211 16788888
Q ss_pred CCCCceeeeecC----CCCeeEEEECCCCCEEEEec--------------------CCCcEEEEEccCcceeeeecccc-
Q 014475 68 WSKPQVEVKSLP----AEPIKPIAANSHGTYIAGGG--------------------QSGDIYMWEVASGRLLKKWHAHY- 122 (424)
Q Consensus 68 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~--------------------~dg~v~iwd~~~~~~~~~~~~~~- 122 (424)
-++.++.-.... ..--..+-|.|..+.+++.. ...++.+||+.+.+.++++.-..
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 776665533322 22345666778777777753 23569999999999999886433
Q ss_pred -CCeEEEEEccC--CcE-EEEeeCCCcEEEEeC-Ccccchhcc-cccccc---------eEEeecCCcCceeEEEEEEcC
Q 014475 123 -RAVTCLVFSED--GSF-LISGSEDGCVRIWSL-LTVFEECES-QRASHL---------YLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 123 -~~i~~~~~~~~--~~~-l~s~~~dg~i~iwd~-~~~~~~~~~-~~~~~~---------~~~~~~~~~~~i~~~~~~~~~ 187 (424)
..+..+.|..+ ..+ ++.+...++|..|-- +.+.-..+. ...... .++.+..-..-|++|.++.+.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 34667777643 333 444444445544432 221100000 000000 000111113457899999887
Q ss_pred ceeEEEEE-eCCCcEEEEecCCCc---eeeeeecC-----------------cceeEEEECCCCCEEEEEe
Q 014475 188 VSATIVSA-SEDRTCKVWSLLKGR---LLRNIVFP-----------------SVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 188 ~~~~l~~~-~~d~~v~iwd~~~~~---~~~~~~~~-----------------~~i~~~~~~~~~~~l~~~~ 237 (424)
++|..+ -..|.|+.||+.... +...+... +....+..|.||+.|++.+
T Consensus 324 --rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 --RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred --CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 565544 468999999997643 23222222 2347788888888887764
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.39 E-value=0.16 Score=48.66 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=70.8
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEEC--CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee-
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS- 264 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 264 (424)
+..++-+....+.|||.+.+........ .+.|..+.|. |+++.+++.+-.+.|.+|.-...........+.++..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 4444444456799999998876655554 7899999985 5888888888889999987643222222222233332
Q ss_pred -ecccC-cCeEEEEecCCCEEEEeCCCCcEEEEeCC
Q 014475 265 -LSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 265 -~~~~~-~~i~~~~~~~~~~l~t~~~dg~i~iwd~~ 298 (424)
+..|. .+|.+..|.++..+++|+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 23343 678999999955555554 4568888743
No 412
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.31 E-value=0.6 Score=40.00 Aligned_cols=223 Identities=14% Similarity=0.119 Sum_probs=124.7
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccC------c-ceeeeecc-----ccCCeEEEEEccCCc------------EE
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVAS------G-RLLKKWHA-----HYRAVTCLVFSEDGS------------FL 137 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~------~-~~~~~~~~-----~~~~i~~~~~~~~~~------------~l 137 (424)
.-+.|+++|.+.+-++....+...+||... . .++..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999998888888888999999861 1 22333331 234577788764322 36
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCc-eeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceee-
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLR-ITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLR- 213 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~- 213 (424)
+.+++||+|.-|...-.... -......+. ..... -..+++...+.+.+|. +--..++|.++|-.-.+...
T Consensus 104 if~tEdGTisaW~p~v~~t~------~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~ 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTR------MTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP 177 (336)
T ss_pred EEEeCCceEEeecCcCCccc------ccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC
Confidence 77889999999986321100 000111111 11122 2345555443224444 44467889999854332211
Q ss_pred -eeecC--------cce---------eEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec--ccCcCeE
Q 014475 214 -NIVFP--------SVI---------DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVT 273 (424)
Q Consensus 214 -~~~~~--------~~i---------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 273 (424)
.+..+ -.| +-..-.++.+.=+.|..-|.|-+||.... .++.+. +.-....
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPW 247 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPW 247 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCc
Confidence 11100 011 11111222222233344468888888773 344442 2334455
Q ss_pred EEEecC-------CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------CeeEEEEEe
Q 014475 274 CLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVR 320 (424)
Q Consensus 274 ~~~~~~-------~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~ 320 (424)
.|+..| +.+|+---.||+|..||..+++.+..+....+ .++.|.|-.
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566644 45666666799999999999998888876544 456777754
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.21 E-value=0.29 Score=47.01 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=73.6
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-cccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
...-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |+++.+++.+..+.|.++.-....-..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555555554445579999998886443322 346889999995 588999998999999998653211110
Q ss_pred cccccccceEEe--ecCCc-CceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475 159 ESQRASHLYLHS--FTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 159 ~~~~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~ 206 (424)
..+...++.. +..++ .+|.+..|.++| .+++|+ ++.+.++|-
T Consensus 111 --~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 --KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGS-GNQLFVFDK 155 (631)
T ss_pred --CCcccceeEEEEeecCCCCCccceeEecCC---eEEEEe-CCEEEEECC
Confidence 1112222222 23333 678999999987 444444 456888874
No 414
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.9 Score=43.77 Aligned_cols=177 Identities=10% Similarity=0.106 Sum_probs=90.7
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee----ccccCCeEEEEEccCCcE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSF 136 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~~ 136 (424)
-.|+|++..+.......-...++..+.|+.+..+|+ ...+|++++|++- |+.+... ......|..+.+..+|-.
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence 578888876654432222334889999998776555 4789999999974 3333331 222344555666556643
Q ss_pred EEEeeCCCcEEEEe-CCcccchhcccccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEe-CCCcEEEEecCCC-cee
Q 014475 137 LISGSEDGCVRIWS-LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSAS-EDRTCKVWSLLKG-RLL 212 (424)
Q Consensus 137 l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~-~d~~v~iwd~~~~-~~~ 212 (424)
++ ..+|++.+-+ .+... ..+ .........+-+|-...+++. ...++-.. ..+ ..++-.... ...
T Consensus 142 vl--t~~g~v~~i~~~~~~~-~~~--------~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 142 VL--TVSGQVILINGVEEPK-LRK--------MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EE--ecCCcEEEEcCCCcch-hhh--------CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 33 3455554433 32210 000 000111111111222222211 01111111 011 111111111 112
Q ss_pred eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
..+. ....+..+.++|+.++|+.-...|.|.+-+.+...
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 2222 33678899999999999999999999999887753
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.19 E-value=0.6 Score=45.42 Aligned_cols=156 Identities=8% Similarity=0.070 Sum_probs=98.8
Q ss_pred CcEEEEeeCCCcEEEEeCCcccchhcc-----ccccc-------ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 134 GSFLISGSEDGCVRIWSLLTVFEECES-----QRASH-------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 134 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
.+++++|. .+.|.||++......... ..... ....... ....|+.|....-+....|+.+..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 55666655 568999998654331110 00000 0011111 3345777777666666899999999999
Q ss_pred EEEecCC-------C-------------ceeeeeecCcceeEEEEC--CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475 202 KVWSLLK-------G-------------RLLRNIVFPSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 202 ~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (424)
.+|.+++ . ++...+..+..+..++++ ...+++|++++...|.+|-.........
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~---- 202 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFY---- 202 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccc----
Confidence 9997521 0 122333456788999998 7889999999988888887765321111
Q ss_pred eeeeeecccCcCeEEEEecC-C---C---EEEEeCCCCcEEEEeC
Q 014475 260 HIIGSLSDHSKAVTCLAYST-G---D---LLISGSEDGMVRVWDP 297 (424)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~-~---~---~l~t~~~dg~i~iwd~ 297 (424)
...-..|...|.+++|-+ . . .+++++-.|.+.+|++
T Consensus 203 --~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 203 --HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111112667888999976 1 2 7888899999999887
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=96.06 E-value=0.86 Score=43.24 Aligned_cols=131 Identities=10% Similarity=0.017 Sum_probs=62.9
Q ss_pred eEEEEEeCC--CcEEEEecCCCceeeeeecCcceeE-EEECCCCCEEEEEeCCC---cEEEEEcCCCCCCCCCcCceeee
Q 014475 190 ATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDA-IALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 190 ~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
...+.|+.+ ..+..||..+.+-...-..+.+... ....-+++..+.|+.++ .+..||.++.. |....
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-------W~~~~ 392 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-------WQFGP 392 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-------EEeCC
Confidence 677777753 3578888765543222122211111 11223677777777553 46778876653 23222
Q ss_pred eecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475 264 SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
.+....... +++...+.+.+.|+ .+.+||.++.+=...-.........-+..-+++..+.||.+
T Consensus 393 ~m~~~r~~~-~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 393 STYYPHYKS-CALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred CCCCccccc-eEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 222111111 22222255666664 47789887654222111111111122233467777888765
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.04 E-value=1.3 Score=41.51 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=89.3
Q ss_pred CCCeeEEEECCCCCEEE-Eec--CCCcEEEEEccCcceeeeeccccCCeEEEEEccC----CcEEEEeeCCCcEEEEeCC
Q 014475 80 AEPIKPIAANSHGTYIA-GGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~-~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~s~~~dg~i~iwd~~ 152 (424)
-.++..++|. ||+.++ +.- .+|.+++=| ...+. .-..|..+.|.|- ...+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3588899997 455444 321 233333322 12232 3345889999983 3244555556789999985
Q ss_pred cccchhcccccccceEEeecC---CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--CceeeeeecCcceeEEEEC
Q 014475 153 TVFEECESQRASHLYLHSFTG---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIVFPSVIDAIALD 227 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~i~~~~~~ 227 (424)
-... +..+....++..- ..---..+.|+|.. ..|+.-.....-.+++++. .+....+...+.|.|.||.
T Consensus 91 ~s~~----e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT 164 (671)
T PF15390_consen 91 PSTT----ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT 164 (671)
T ss_pred cCcc----ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEec
Confidence 2111 1111111111111 11122456799987 6666666655555666653 3444556678899999999
Q ss_pred CCCCEEEEEeCC-CcEEEEEcCCC
Q 014475 228 PAEHVFYAGSRD-GSIYIAALNAE 250 (424)
Q Consensus 228 ~~~~~l~~~~~d-g~i~i~d~~~~ 250 (424)
+||+.|+++-.. =.-++||-...
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCchh
Confidence 999988776433 24567776544
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.69 E-value=1.6 Score=39.68 Aligned_cols=193 Identities=10% Similarity=0.101 Sum_probs=89.9
Q ss_pred cCCCccccCCCCceeEEEEECCCCc--eee-eecCC---------CCeeEEEECCCCCEEEEecC------CCcEEEEEc
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQ--VEV-KSLPA---------EPIKPIAANSHGTYIAGGGQ------SGDIYMWEV 109 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~--~~~-~~~~~---------~~v~~~~~s~~~~~l~~~~~------dg~v~iwd~ 109 (424)
...++|++.+-.++.|.|.|+.+.. ..+ +.... .....+..-|+|++++++-. -|-+.+.|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 3567788888767999999997432 111 11110 12334445578988887522 245888888
Q ss_pred cCcceeeeeccc---cCCeEEEEEccCCcEEEEeeC--------------------CCcEEEEeCCcccchhcccccccc
Q 014475 110 ASGRLLKKWHAH---YRAVTCLVFSEDGSFLISGSE--------------------DGCVRIWSLLTVFEECESQRASHL 166 (424)
Q Consensus 110 ~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~ 166 (424)
++.+........ ...-..+-|.|..+.++|... ..++.+||+.+ .+
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-----------r~ 233 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-----------RK 233 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-----------TE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-----------Cc
Confidence 777776666432 233456777887777877632 35799999955 33
Q ss_pred eEEeecCCc--CceeEEEEEEcCceeEEE-EEeCCCcEEEEec-CCCc----eeeeee------------------cCcc
Q 014475 167 YLHSFTGHT--LRITDIVIGYGGVSATIV-SASEDRTCKVWSL-LKGR----LLRNIV------------------FPSV 220 (424)
Q Consensus 167 ~~~~~~~~~--~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~-~~~~----~~~~~~------------------~~~~ 220 (424)
.++++.-.. .....+.|..+....+-+ .+.-..+|..|-- ..++ .+..+. .+.-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 444444322 234456666554333333 3333444544433 3322 111111 1345
Q ss_pred eeEEEECCCCCEEEEEe-CCCcEEEEEcCCCC
Q 014475 221 IDAIALDPAEHVFYAGS-RDGSIYIAALNAES 251 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 251 (424)
|+.+.+|.|.++|++.+ ..|.++.||+....
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 79999999999998876 68999999998864
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.17 Score=50.67 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=91.9
Q ss_pred CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--------e----eecCcceeEEEECCC-CCEEEEEeCCCcE
Q 014475 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--------N----IVFPSVIDAIALDPA-EHVFYAGSRDGSI 242 (424)
Q Consensus 176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~-~~~l~~~~~dg~i 242 (424)
.+|..+...++..-..++..+.+-.|..||+++-.... . +....-..++.|.|. ....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45555666666532334444455578899987533221 1 112344567788884 3446677789999
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc----CCCeeEEE
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA----KGPVNNIL 317 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~ 317 (424)
++..+..... .+.. -.-....++++|+| |..++.|...|++.-|... ++....+... ...|.+++
T Consensus 181 ~V~~~~~~~~--------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 181 RVKSTKQLAQ--------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhhhhhhhh--------hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEE
Confidence 8887766431 1222 12446789999999 9999999999999999754 5544444422 35799999
Q ss_pred EEecCceeee
Q 014475 318 VVRRPLYLNL 327 (424)
Q Consensus 318 ~s~~~~~l~~ 327 (424)
|-....+|++
T Consensus 251 Wl~t~eflvv 260 (1405)
T KOG3630|consen 251 WLSTQEFLVV 260 (1405)
T ss_pred EecceeEEEE
Confidence 9887777765
No 420
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.60 E-value=1.6 Score=39.22 Aligned_cols=208 Identities=17% Similarity=0.213 Sum_probs=114.6
Q ss_pred CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc----cCCcE--EEEeeC-C---CcEEEEeCCcccchhc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS----EDGSF--LISGSE-D---GCVRIWSLLTVFEECE 159 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~s~~~-d---g~i~iwd~~~~~~~~~ 159 (424)
|...+++....++-+.+||+. |+.++.+. .+.++.+..- -+++. |+.++. + ..|++|.+........
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 345677777778889999985 55566654 2344444432 13443 444443 2 3699998743111000
Q ss_pred ccccccceEEeecCCcCceeEEEEEEc--CceeEEEEEeCCCcEEEEecC---CC----ceeeeeecCcceeEEEECCCC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~~~d~~v~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~ 230 (424)
.......+ +......+..+|+-.+ ...-+++....+|.+..|-+. .+ +.++.+.....+..|......
T Consensus 143 ~v~~~~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 143 DVTDPAAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp E-CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred EcCCCCcc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 00000000 1112234667777543 222567778889988888764 22 467888888899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC----CCEEEEe-CCCCcEEEEeCCC-CcE
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST----GDLLISG-SEDGMVRVWDPIT-HNI 302 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~----~~~l~t~-~~dg~i~iwd~~~-~~~ 302 (424)
..|+.+-.+.-|.-|+.+...... ...+....+ ....|..|+.-. ..||+.. -.+++..+|+.+. ...
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~ 295 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAY 295 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--E
T ss_pred CCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcc
Confidence 999999999888888876543221 122322222 345677777642 2345444 4678899999764 344
Q ss_pred EEEEe
Q 014475 303 VRMFR 307 (424)
Q Consensus 303 ~~~~~ 307 (424)
+..|.
T Consensus 296 ~g~f~ 300 (381)
T PF02333_consen 296 VGSFR 300 (381)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 55554
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.59 E-value=0.56 Score=42.71 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=79.9
Q ss_pred CCeeEEEECCCCCEEEEec-----------CCC-cEEEEEccC--cce--eeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475 81 EPIKPIAANSHGTYIAGGG-----------QSG-DIYMWEVAS--GRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDG 144 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 144 (424)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+-........+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 4567889999999877642 223 677776543 222 23333334456889999888 444 4444
Q ss_pred cEEEE-eCCcccchhcccccccceEEeecC----CcCceeEEEEEEcCceeEEEEEeC-------------------CCc
Q 014475 145 CVRIW-SLLTVFEECESQRASHLYLHSFTG----HTLRITDIVIGYGGVSATIVSASE-------------------DRT 200 (424)
Q Consensus 145 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~-------------------d~~ 200 (424)
.|..+ |...... .. ......+..+.. +......++|.|++ .+.++-+. .|.
T Consensus 91 ~i~~~~d~~gdg~-ad--~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 91 DILFLRDKDGDDK-AD--GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred eEEEEeCCCCCCC-CC--CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCce
Confidence 34433 4432100 00 011112222322 23457788899887 55444331 134
Q ss_pred EEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475 201 CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (424)
|.-+|..+++. ..+. .-.....++|+|+|+++++-.
T Consensus 166 i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 166 LFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 55566554443 2232 234467899999998876644
No 422
>PRK10115 protease 2; Provisional
Probab=95.45 E-value=3.1 Score=41.43 Aligned_cols=111 Identities=5% Similarity=-0.057 Sum_probs=67.2
Q ss_pred eEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC------CcEEEEE
Q 014475 39 LACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS------GDIYMWE 108 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~v~iwd 108 (424)
+..+. ++|++++++.+... ...|++-|+.++........... ..++|++|++.|+....+ ..|+.++
T Consensus 129 l~~~~--~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMA--ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEE--ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 44445 89999998866433 25688999987753322222222 569999999877665432 3588888
Q ss_pred ccCc--ceeeeeccccCCeE-EEEEccCCcEEEEeeC---CCcEEEEeCC
Q 014475 109 VASG--RLLKKWHAHYRAVT-CLVFSEDGSFLISGSE---DGCVRIWSLL 152 (424)
Q Consensus 109 ~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~s~~~---dg~i~iwd~~ 152 (424)
+.++ +....+........ .+..+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8877 33334443333333 2333447777665443 3568888853
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.3 Score=44.70 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=92.1
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC-------EEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
-.+..++....+.--|+..|+.+........+ -+.+.|..+ .-++|-.+..|.-.|.+...... .+
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi------~v 553 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI------KV 553 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce------ee
Confidence 34456667778888899999999988866555 677887532 24556667777777776543110 11
Q ss_pred eeecc--cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 263 GSLSD--HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 263 ~~~~~--~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
...+. ......+..-....++|.++..|.|++||--.-+...-+++-...|..+..+.+|.++++.+. ..+.+-+++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 11111 112222332223789999999999999995433334445666678999999999998877654 445555554
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.36 E-value=2.2 Score=39.18 Aligned_cols=267 Identities=14% Similarity=0.097 Sum_probs=142.5
Q ss_pred CCCccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-----CCCEEEEecCCCcEEEEEccCc--c---
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASG--R--- 113 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~v~iwd~~~~--~--- 113 (424)
....+++|+.. |.++|++..... .........||..+..-+ +...||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~-G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYS-GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccc-cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34567777777 999999986543 334445678998887642 3345555 45677888888321 1
Q ss_pred ----eeeeecccc--CCeEEEEEcc----C-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 114 ----LLKKWHAHY--RAVTCLVFSE----D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 114 ----~~~~~~~~~--~~i~~~~~~~----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
.+..+..|. .....++.-| . -.++.+-+.||.+.+|+-+. ......+.. ---...+.
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----------~~f~~~lp~-~llPgPl~ 181 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----------FAFSRFLPD-FLLPGPLC 181 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----------EEEEEEcCC-CCCCcCeE
Confidence 112222332 2233333333 2 35788889999999999754 111222222 22223456
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCC--------------------Cc---eeeeeecCcceeEEEE---CCCCCEEEEE
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLK--------------------GR---LLRNIVFPSVIDAIAL---DPAEHVFYAG 236 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~--------------------~~---~~~~~~~~~~i~~~~~---~~~~~~l~~~ 236 (424)
+.+.. +.|++++.+..+..|.... ++ +-..+.....+..+.. +.....+++-
T Consensus 182 Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL 259 (418)
T PF14727_consen 182 YCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL 259 (418)
T ss_pred EeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE
Confidence 77776 6788888888888886521 00 1122223344444443 2222223322
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe----cC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY----ST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (424)
+ ...+.+.+-... .+....+............ .+ ...++.++.++++.||.= .+++...+...
T Consensus 260 g-er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~ 328 (418)
T PF14727_consen 260 G-ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPH 328 (418)
T ss_pred e-cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCC
Confidence 2 334555544331 1222333221111111111 12 225888889999999863 33444444333
Q ss_pred CCeeEEE---EEecCceeeeccCCCceeeccCCCCC
Q 014475 311 GPVNNIL---VVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 311 ~~v~~l~---~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.|| ++. |..-.-.|++-+.+|.+.+--+.+..
T Consensus 329 ~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 329 VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 443 333 22334578888899999887776553
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.28 E-value=1.9 Score=37.80 Aligned_cols=187 Identities=13% Similarity=0.180 Sum_probs=89.9
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCc-ce-eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
...+....++..++++ ..|.|+ ....+ +. ......-.+.+..+.-+++|+++++++.-..+.-||.-
T Consensus 106 ~~~i~~l~~~~~~l~~-~~G~iy--~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G-------- 174 (302)
T PF14870_consen 106 PFGITALGDGSAELAG-DRGAIY--RTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG-------- 174 (302)
T ss_dssp EEEEEEEETTEEEEEE-TT--EE--EESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--------
T ss_pred eeEEEEcCCCcEEEEc-CCCcEE--EeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCC--------
Confidence 3344443444444443 445443 33333 22 22233445778889999999988887665555678762
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEe-cCCCceeee----ee-cCcceeEEEECCCCCEEE
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS-LLKGRLLRN----IV-FPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~~~----~~-~~~~i~~~~~~~~~~~l~ 234 (424)
..............|..|.|.+++ ...+ ....|.|+.=+ ....+.-.. +. ..-.+..+++.+++...+
T Consensus 175 ---~~~w~~~~r~~~~riq~~gf~~~~--~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 175 ---QTTWQPHNRNSSRRIQSMGFSPDG--NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp ----SS-EEEE--SSS-EEEEEE-TTS---EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred ---CccceEEccCccceehhceecCCC--CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence 222233334456789999999986 4434 44888888877 222222111 11 233478999999888777
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw 295 (424)
+|+. |.+ +...+.++. ++.......-...+..+.|.+ .+-++. +.+|.|.-|
T Consensus 249 ~gg~-G~l-~~S~DgGkt------W~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 249 VGGS-GTL-LVSTDGGKT------WQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EEST-T-E-EEESSTTSS-------EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EeCC-ccE-EEeCCCCcc------ceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6654 433 444444431 233323333455678888876 444444 467876544
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=3.1 Score=40.34 Aligned_cols=219 Identities=16% Similarity=0.167 Sum_probs=107.9
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
+-+.+.++..+|....=+. +.--.|+||+. +|..+..+.-..+.+-.+.|+.+. .|++...+|++++|++.......
T Consensus 42 p~gGpIAV~r~p~~~~~~~-~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLY-SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred ccCCceEEEeccccccccc-ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence 3444455555552211111 23346899985 677776665555588999999655 57777899999999985421110
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-C-cce--eEEEECCCCC---
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVI--DAIALDPAEH--- 231 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~-~~i--~~~~~~~~~~--- 231 (424)
. -.........|..+.+..+| ++.-..+|.+.+-+-.....+..+.. + ... .|-...+++.
T Consensus 119 ~--------svg~e~~~~~I~ec~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~ 186 (829)
T KOG2280|consen 119 N--------SVGFESQMSDIVECRFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQST 186 (829)
T ss_pred c--------ccccccccCceeEEEEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcce
Confidence 0 00112223344444444444 33334445554433222212222221 1 111 2222222211
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
.++--. ..+ ..++-..... .....+......+..+..+| .++|+--...|.|.+-+....++...+...
T Consensus 187 ~ll~v~~~v~-~~~~q~~~~~--------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 187 ILLDVDVAVG-LHICQVEESR--------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred eEEeechhhh-hcccceeccc--------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111111 011 1111111111 01111222235677888998 889999999999999998887777776621
Q ss_pred C-CCeeEEEEEec
Q 014475 310 K-GPVNNILVVRR 321 (424)
Q Consensus 310 ~-~~v~~l~~s~~ 321 (424)
. .+-..++|.-+
T Consensus 258 ~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 258 DHDPPKQMAWCGN 270 (829)
T ss_pred CCCchHhceeecC
Confidence 1 12225555543
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.15 E-value=1.8 Score=36.99 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=84.7
Q ss_pred CeEEEEEccCCcEEEEee---CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 124 AVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
.+.+.+++++++.++... ....+.++..... . ..... ...+..-.|++++ ...+....+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----------~--~~~~~--g~~l~~PS~d~~g--~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----------V--RPVLT--GGSLTRPSWDPDG--WVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----------c--eeecc--CCccccccccCCC--CEEEEEcCCCc
Confidence 688999999999877655 2334555554321 1 11112 2255666787775 45555555555
Q ss_pred EEEEe-cCCCcee-eeee---cCcceeEEEECCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 201 CKVWS-LLKGRLL-RNIV---FPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 201 v~iwd-~~~~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
.+++. ..+++.. .... ....|..+.++|||..++... .++.|.+--+........................+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV 168 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence 66663 2333222 1222 112899999999999888765 35678777664432221111112222222345689
Q ss_pred EEEEecC-CCEEEEeCCC
Q 014475 273 TCLAYST-GDLLISGSED 289 (424)
Q Consensus 273 ~~~~~~~-~~~l~t~~~d 289 (424)
+.+.|.+ +.+++.+...
T Consensus 169 ~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eeeeecCCCEEEEEeCCC
Confidence 9999999 6665555543
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.14 E-value=0.95 Score=33.68 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=68.6
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcc--------eeeeeccccCCeEEEEEcc-----CCcEEEEeeCCCcEEEEe
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGR--------LLKKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~~dg~i~iwd 150 (424)
..-+|......|++++.-|+|.|++..... .+..+. -...|++++-.+ +...|+.|+.. .+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence 344676677789999999999999886432 333343 456677776543 34567777665 799999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCcee
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLL 212 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~ 212 (424)
+.+.. ... ++.-...++++.+..-+. ..-++..+.+..|.-||....+..
T Consensus 80 V~~N~---------d~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 80 VENNS---------DLF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cccCc---------hhh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 97632 222 122345666666643221 133444444566777776544443
No 429
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.13 E-value=2.6 Score=38.60 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=44.7
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeec---CC-CCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCc
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL---PA-EPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASG 112 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~~-~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~ 112 (424)
.+++..+.+|..+..+.++|++.....+... +. .........-++.+.+.|+.. ..+..||..+.
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 3556556555544667788876422112211 11 111111222356677777653 24778888765
Q ss_pred ceeeeeccccCCe--EEEEEccCCcEEEEeeCC
Q 014475 113 RLLKKWHAHYRAV--TCLVFSEDGSFLISGSED 143 (424)
Q Consensus 113 ~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~d 143 (424)
+-...-....... .+....-+++..+.|+.+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 4322111001111 112221367777887754
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=94.94 E-value=2.7 Score=37.75 Aligned_cols=151 Identities=9% Similarity=0.077 Sum_probs=80.3
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
...+..+.+.|++.+++++ ..|.+.. ++- ...........-...++++.+.+++ ..+++ +..|.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-----------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-----------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQ 236 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-----------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCE
Confidence 4568899999988666555 4565543 221 1111112222345678888888876 55444 45676
Q ss_pred EEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 201 CKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
+++=..+.+..-..... ...+..+.+.|++..++++ .+|.+. ...+.+.. ++.+.....-......+
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t------W~~~~~~~~~~~~~~~~ 308 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT------WEKDPVGEEVPSNFYKI 308 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC------CeECCcCCCCCcceEEE
Confidence 65333344443222221 2347788899887755544 566554 33443321 12211111222356777
Q ss_pred EecC-CCEEEEeCCCCcEEEEe
Q 014475 276 AYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iwd 296 (424)
.+.. +..++ .+..|.|.-|+
T Consensus 309 ~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 309 VFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEeCCCceEE-ECCCceEEEec
Confidence 7766 55544 55678887776
No 431
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.83 E-value=4.9 Score=40.34 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=69.0
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCC---ceEEecceee----------------cCCCccccCCCCceeEE
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH---GLACVGQRFL----------------ASSQLREQPSASSGSIL 64 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~----------------~~~~~l~~~~~~~g~i~ 64 (424)
.|..++ .++.|.-.|.++|+.+-++........ ...|-...+. ..+..++.++.| +.+.
T Consensus 196 ~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D-g~Li 273 (764)
T TIGR03074 196 TLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD-ARLI 273 (764)
T ss_pred EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC-CeEE
Confidence 456666 788999999999999877754332111 0011000021 123356666666 8999
Q ss_pred EEECCCCceeeeecCCCCee-------------EEEECC--CCCEEEEecC----------CCcEEEEEccCcceeeeec
Q 014475 65 YWSWSKPQVEVKSLPAEPIK-------------PIAANS--HGTYIAGGGQ----------SGDIYMWEVASGRLLKKWH 119 (424)
Q Consensus 65 vwd~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~ 119 (424)
-.|.++++........+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999888876554333221 111222 2345555532 6889999999999887664
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=3 Score=37.92 Aligned_cols=125 Identities=6% Similarity=0.073 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCc--eeeee--ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 197 EDRTCKVWSLLKGR--LLRNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 197 ~d~~v~iwd~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
..|.+.-|-..... ....+ ...++|.++.|++|.+.+++--.+..|.+++........ ....+.+.....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-----~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-----EYTQECKTKNANI 115 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-----HHHHHhccCccee
Confidence 34455556544222 22222 256799999999999999999999999999985543110 1122233344568
Q ss_pred EEEEecCCCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCCeeEEEEEecCceeee
Q 014475 273 TCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 273 ~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 327 (424)
....|+...-+|.-...| +-+|-... .+.++..+.|...|.--.|.++.+.++-
T Consensus 116 lGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred EEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 888898755566555444 66665543 3345556667778888888888776543
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.81 E-value=0.72 Score=44.88 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=68.9
Q ss_pred cCCCccccCCCCceeEEEEECCC-------C----c---------eeeeecCCCCeeEEEEC--CCCCEEEEecCCCcEE
Q 014475 48 ASSQLREQPSASSGSILYWSWSK-------P----Q---------VEVKSLPAEPIKPIAAN--SHGTYIAGGGQSGDIY 105 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~v~ 105 (424)
-....|+.+..+ |.|.+|..+. . . +.+.......++.++++ ...++||+++....|.
T Consensus 112 g~~EVLl~c~Dd-G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDD-GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecC-CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEE
Confidence 344555555555 9999997631 0 0 11222245688999998 8888999998888888
Q ss_pred EEEccCcceeee---eccccCCeEEEEEccCC---c---EEEEeeCCCcEEEEeC
Q 014475 106 MWEVASGRLLKK---WHAHYRAVTCLVFSEDG---S---FLISGSEDGCVRIWSL 151 (424)
Q Consensus 106 iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~---~---~l~s~~~dg~i~iwd~ 151 (424)
||-......... -..|...|-+|+|.++. . .+++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 887654211111 11366779999997633 2 6788889999999887
No 434
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.80 E-value=0.17 Score=29.12 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=26.3
Q ss_pred CCeeEEEECCCC---CEEEEecCCCcEEEEEccCc
Q 014475 81 EPIKPIAANSHG---TYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 81 ~~v~~~~~s~~~---~~l~~~~~dg~v~iwd~~~~ 112 (424)
+.|.++.|||+. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 435
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.76 E-value=2.6 Score=36.88 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=101.2
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeee--ccc---cCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKW--HAH---YRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~--~~~---~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
....++..|.|..+..-+++|. .+.| +....+ +.=... ... .-...++.|.. ...+++| ..|. .+...
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~ 87 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTT 87 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEES
T ss_pred CCCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEec
Confidence 3466899999996666667665 4543 333333 211111 111 12356777764 3444544 4453 33333
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPA 229 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~ 229 (424)
+.+ .....+..-..-......+....++ ...+. +..|.|.. ..+.++.=..+. ....+..+..+++
T Consensus 88 DgG--------~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 88 DGG--------KTWERVPLSSKLPGSPFGITALGDG--SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp STT--------SS-EE----TT-SS-EEEEEEEETT--EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TT
T ss_pred CCC--------CCcEEeecCCCCCCCeeEEEEcCCC--cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCC
Confidence 221 1111111111112223334444443 33333 33443322 222333222222 4567888889999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe-CCCCcEEEE--
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD-PITHNIVRM-- 305 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd-~~~~~~~~~-- 305 (424)
|++++++.......-||-.... +.+. .+.-...|..|.|.| +.+.+.+ ..|.|++=+ ....+....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~-------w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTT-------WQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS--------EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B
T ss_pred CcEEEEECcccEEEEecCCCcc-------ceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc
Confidence 9999888766556677765432 2222 222457899999999 5554544 888888877 222222222
Q ss_pred Ee--ccCCCeeEEEEEecCceeeeccCC
Q 014475 306 FR--LAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 306 ~~--~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
.. ...-.+..++|.+++...++|+..
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 11 111247889999988777776544
No 436
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.62 E-value=3.3 Score=37.39 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=44.2
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeec---C-CCCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCcc
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR 113 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~~ 113 (424)
+++..++++.....+..+|++.....+... + ..........-++++.+.|+.+ ..+..||+.+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 455555566543567777764322222211 1 1111111222357777777753 247788887654
Q ss_pred eeeeeccccCCeE--EEEEccCCcEEEEeeCC
Q 014475 114 LLKKWHAHYRAVT--CLVFSEDGSFLISGSED 143 (424)
Q Consensus 114 ~~~~~~~~~~~i~--~~~~~~~~~~l~s~~~d 143 (424)
-...-........ +....-+++..+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 3222111111111 11112367788888764
No 437
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=2.6 Score=36.07 Aligned_cols=261 Identities=10% Similarity=0.050 Sum_probs=133.6
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee----
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS---- 77 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~---- 77 (424)
|.+...+. .+.-++|.|+.+......+.... -..-..+ +.-.|++..++..+ .-+.+.|+.++......
T Consensus 96 e~yvyvad-~ssGL~IvDIS~P~sP~~~~~ln-t~gyayg----v~vsGn~aYVadld-dgfLivdvsdpssP~lagrya 168 (370)
T COG5276 96 EEYVYVAD-WSSGLRIVDISTPDSPTLIGFLN-TDGYAYG----VYVSGNYAYVADLD-DGFLIVDVSDPSSPQLAGRYA 168 (370)
T ss_pred ccEEEEEc-CCCceEEEeccCCCCcceecccc-CCceEEE----EEecCCEEEEeecc-CcEEEEECCCCCCceeeeeec
Confidence 45566666 67789999988765543332111 1111222 55678888777766 55667788766543322
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce---eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
.....-..++.| |++-..+..|+-+.+-|+..... +.... ....+.++..+++-.+++... --+.+-|..+.
T Consensus 169 ~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ 243 (370)
T COG5276 169 LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGP 243 (370)
T ss_pred cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceEEEecCCC
Confidence 123344566665 66777777888999999865532 22221 223678888887665555543 34667777552
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee---eecCc-ceeEEEECCCC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN---IVFPS-VIDAIALDPAE 230 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~-~i~~~~~~~~~ 230 (424)
+...+.-....+.++..-.+.-.+ ++......+..+.+-|+.+...... +...+ ....+.. .+
T Consensus 244 ---------ssp~~~gsyet~~p~~~s~v~Vs~--~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~ 310 (370)
T COG5276 244 ---------SSPTVFGSYETSNPVSISTVPVSG--EYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YG 310 (370)
T ss_pred ---------CCceEeeccccCCcccccceeccc--ceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ec
Confidence 211222111122222111222233 5666666677777777765432211 11111 2222222 34
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
.++..+..+ ...+.+....+... ...+....+.+.+.+- .+.+.+...++-+.||+.
T Consensus 311 ~y~yiadkn-~g~vV~~s~~s~m~---------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 311 NYNYIADKN-TGAVVDASPPSMMD---------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred CeeEeccCC-ceEEEeCCChhhcc---------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 444444443 44455554432111 1111111122222222 447777788888888874
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.61 E-value=0.82 Score=41.97 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=86.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCcc-------ccCCCCceeEEEEECCC-Ccee
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLR-------EQPSASSGSILYWSWSK-PQVE 74 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------~~~~~~~g~i~vwd~~~-~~~~ 74 (424)
+++..|. ....+.--|++.|+.+.++..+.. + .+. |.|+.+.- ++|-++ ..|.-.|.+- +...
T Consensus 481 li~~dg~-~~~kLykmDIErGkvveeW~~~dd----v-vVq--y~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi 551 (776)
T COG5167 481 LIYLDGG-ERDKLYKMDIERGKVVEEWDLKDD----V-VVQ--YNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKI 551 (776)
T ss_pred eEEecCC-CcccceeeecccceeeeEeecCCc----c-eee--cCCchhHHhcCccceEEeecc-cceEEecccccCCce
Confidence 4555666 667788888999999999886643 2 233 65653321 122222 3333334331 1111
Q ss_pred eeecCCCCeeEEEECC----CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEe
Q 014475 75 VKSLPAEPIKPIAANS----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd 150 (424)
......+-++.-.||. ...++|+|+..|.|++||--.-+....+++-...|..+..+.+|+++++.+.. .+.+-|
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d 630 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTD 630 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEe
Confidence 1111122222222332 35589999999999999965444455667788899999999999998877664 788888
Q ss_pred CC
Q 014475 151 LL 152 (424)
Q Consensus 151 ~~ 152 (424)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 74
No 439
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.56 E-value=0.082 Score=51.45 Aligned_cols=137 Identities=14% Similarity=0.237 Sum_probs=82.2
Q ss_pred CceEEEeCC--CCceEEEe-----eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeE
Q 014475 13 TGIGCWDLE--SGAEQLRY-----KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP 85 (424)
Q Consensus 13 g~i~vwd~~--~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~ 85 (424)
|.+.|||+. .|+....+ ..-...+..|.... |.++..++..+-++ ++|++.+++.....+...|...+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp--~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP--IAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecc--cccccceeeeccCC-CceeEeeechHHHHHHHhcCCCccc
Confidence 567788865 34433222 22233445566666 77777666555555 9999988876554433336554444
Q ss_pred EE-----------ECCCCCEEEEecCCCcEEEEEcc-----Ccceeeeecccc-CCeEEEEEccCC---------cEEEE
Q 014475 86 IA-----------ANSHGTYIAGGGQSGDIYMWEVA-----SGRLLKKWHAHY-RAVTCLVFSEDG---------SFLIS 139 (424)
Q Consensus 86 ~~-----------~s~~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~-~~i~~~~~~~~~---------~~l~s 139 (424)
++ .||||+.+|.+..||.++.|.+. .-.++...+.|+ .+-.|.-++.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 33 59999999999999998888763 234555667776 333333343221 23444
Q ss_pred eeC-CCcEEEEeCC
Q 014475 140 GSE-DGCVRIWSLL 152 (424)
Q Consensus 140 ~~~-dg~i~iwd~~ 152 (424)
++. +..+++|.-.
T Consensus 310 ttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEA 323 (1283)
T ss_pred cccCCcceeEeecc
Confidence 443 4568888763
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.51 E-value=5.7 Score=39.57 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=55.4
Q ss_pred cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc-cchhccccccc-ceEEe--------ecCCcCceeEEEEEEcC-cee
Q 014475 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV-FEECESQRASH-LYLHS--------FTGHTLRITDIVIGYGG-VSA 190 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~-~~~~~--------~~~~~~~i~~~~~~~~~-~~~ 190 (424)
.-.|..+.++|+|.+++..|..| |.|-.+... .........+. ...+. ...+...|..+.|+|.+ .+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 35788999999999999888865 555555321 10000000011 01111 12345688999999975 237
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 014475 191 TIVSASEDRTCKVWSLLKG 209 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~ 209 (424)
.|+.-+.|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8899999999999999753
No 441
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.42 E-value=0.089 Score=51.24 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=83.8
Q ss_pred eeEEEEECCC--Cce----eeee--cCCCCeeEEEEC---CCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE
Q 014475 61 GSILYWSWSK--PQV----EVKS--LPAEPIKPIAAN---SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV 129 (424)
Q Consensus 61 g~i~vwd~~~--~~~----~~~~--~~~~~v~~~~~s---~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 129 (424)
|.+.||+++- +++ .... .....+.-+.|. ++..++..+-.++.+++.+..+... ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 8899999873 222 1111 123344555554 4678888888889988877654432 34455766555444
Q ss_pred -----------EccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc-CceeEEEEEEc-------Ccee
Q 014475 130 -----------FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYG-------GVSA 190 (424)
Q Consensus 130 -----------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-------~~~~ 190 (424)
.+|||+.++.+..||.++.|.+.-.. .....+.+.++.|. .+-.|..+... +.-.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g------~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~ 305 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG------KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV 305 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec------cccHhhhhccCCCCCCCceeeeeccccccCCccceeE
Confidence 57899999999999999988773211 12233444555555 22222222211 1013
Q ss_pred EEEEEe-CCCcEEEEecCCCcee
Q 014475 191 TIVSAS-EDRTCKVWSLLKGRLL 212 (424)
Q Consensus 191 ~l~~~~-~d~~v~iwd~~~~~~~ 212 (424)
++++++ .+..+++|.....+++
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 344444 3556888987766665
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.39 E-value=2.1 Score=42.51 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=53.2
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEcCCC-CCCC----CCcCceeee-------eecccCcCeEEEEecC----CCE
Q 014475 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPST----SSYGMHIIG-------SLSDHSKAVTCLAYST----GDL 282 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~~~-------~~~~~~~~i~~~~~~~----~~~ 282 (424)
-.|..+.++|+|.+++..+..| |.|..+... .... ......+-. ....+...|..+.|+| +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988765 555555331 1000 000001100 0123456799999999 478
Q ss_pred EEEeCCCCcEEEEeCCCC
Q 014475 283 LISGSEDGMVRVWDPITH 300 (424)
Q Consensus 283 l~t~~~dg~i~iwd~~~~ 300 (424)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 443
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=1.1 Score=46.36 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=45.8
Q ss_pred ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 267 DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 267 ~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
-+..++.+..+....-++.+...+.+-+|+.........+..... .+++++..++++-.||.+.+||...+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-----LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-----cCccCCceEEEEEecCCEEeeecCCCce
Confidence 345555665554433334445567777777554443333332211 2288899999999999999999998755
No 444
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.11 E-value=1.6 Score=40.95 Aligned_cols=150 Identities=15% Similarity=0.313 Sum_probs=91.1
Q ss_pred CCeEEEEEccCCcEEE-Eee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce--eEEEEEeC
Q 014475 123 RAVTCLVFSEDGSFLI-SGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASE 197 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~-s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~~~~~ 197 (424)
.++..++|. ||+.++ +.- .+|.+++=|. . .-+.-..|..+.|.|-+.. ..+++.-.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------------~----viGqFEhV~GlsW~P~~~~~~paLLAVQH 80 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------------K----VIGQFEHVHGLSWAPPCTADTPALLAVQH 80 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc--------------c----EeeccceeeeeeecCcccCCCCceEEEec
Confidence 478899997 565544 322 2333333332 1 1233346788899886321 35666677
Q ss_pred CCcEEEEecC-----CCceeee----ee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 198 DRTCKVWSLL-----KGRLLRN----IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 198 d~~v~iwd~~-----~~~~~~~----~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
.+.|.+|.+. +.+.+.. +. .+--...+.|+|....|++-.....-.+++++... ..+..-.
T Consensus 81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi 152 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--------SRVKADI 152 (671)
T ss_pred cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--------ceEEEec
Confidence 8899999875 2222221 11 22234578899999988887766555667766554 2333333
Q ss_pred ccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCC
Q 014475 267 DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT 299 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~ 299 (424)
...+.|.|.+|.+ |+.|+.+ +..=.-++||-..
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5668899999999 7665554 4444578898543
No 445
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.10 E-value=0.28 Score=28.23 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=26.2
Q ss_pred cCeEEEEecC--C--CEEEEeCCCCcEEEEeCCCC
Q 014475 270 KAVTCLAYST--G--DLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 270 ~~i~~~~~~~--~--~~l~t~~~dg~i~iwd~~~~ 300 (424)
+.|.++.|+| + ++|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999997 4 68888888899999999953
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.04 E-value=0.0082 Score=53.93 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=104.6
Q ss_pred EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcC
Q 014475 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
...|-+.+ .-++.++.+..+..|| +.++.......++....++|+.++..+++ +-..+.+++||+.......
T Consensus 39 ~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---- 111 (615)
T KOG2247|consen 39 IHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---- 111 (615)
T ss_pred eeeEecCC--CceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH----
Confidence 34566665 4588888888999999 45666777777888888999988776554 5677899999998864211
Q ss_pred ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeec
Q 014475 259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (424)
Q Consensus 259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw 337 (424)
+..-..|.... +.|++ ...++.+-..|.+.|++..+.+.+...-.|...++++++.+.+. .+.++.|..+.+-
T Consensus 112 ---LE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 112 ---LESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred ---HhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHh
Confidence 11111122222 67888 77888888999999999888777766656889999999998874 4455555555444
Q ss_pred cCC
Q 014475 338 RRH 340 (424)
Q Consensus 338 ~~~ 340 (424)
...
T Consensus 186 ~qe 188 (615)
T KOG2247|consen 186 TQE 188 (615)
T ss_pred hhc
Confidence 433
No 447
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=93.73 E-value=8.9 Score=38.95 Aligned_cols=250 Identities=12% Similarity=0.016 Sum_probs=127.7
Q ss_pred EECCCCCEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 87 AANSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.+-++...+++-+.+|.|+-.+..+... ...++. ...+..+........++..+..|.+...........
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence 3345566777888899888776543221 111222 234444444455666777777888777655432221
Q ss_pred hcccccccceE---EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-------eeeeecCcceeEEEEC
Q 014475 158 CESQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALD 227 (424)
Q Consensus 158 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~i~~~~~~ 227 (424)
.. ......+ ..+...+.-+..+.+..-.+...++..+.+|.++-.++..-.. ...+...+.+..+...
T Consensus 570 ~r--~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~ 647 (800)
T TIGR01063 570 SR--TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT 647 (800)
T ss_pred Cc--CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence 10 0111111 1222233334444433222226789999999999887653221 1122234445444444
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------
Q 014475 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT------- 299 (424)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~------- 299 (424)
.....++..+..|.+..+....-..............+.. ...|.++..-+ +..++..+..|.++...+..
T Consensus 648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~ 726 (800)
T TIGR01063 648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG 726 (800)
T ss_pred CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence 4556677778888877776654322111111111122322 23344444333 55788888889888876432
Q ss_pred CcEEEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 300 HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 300 ~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++-+..++ ...+.+-.+....+...++..+.+|.+..+...
T Consensus 727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 22222332 222444444444444456666677776665544
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=3.1 Score=33.64 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=99.0
Q ss_pred CCcEEEEeeCC--CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc
Q 014475 133 DGSFLISGSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (424)
Q Consensus 133 ~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 210 (424)
++.++.+.+.- ..|++||+.++.......... ..+ ....++. -++ .+-.-.-.+|.-..+|.++-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~--FgEGit~-----~gd-~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTV--FGEGITK-----LGD-YFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----ccc--cccceee-----ccc-eEEEEEeccceeEEEChHHhh
Confidence 45666666653 369999998654322211110 000 1111211 121 233344567888999999999
Q ss_pred eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCC
Q 014475 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~d 289 (424)
.+..+..++.-..++. ++..|+.+.....++.-|..+-.... ....+..+ .-..++-+.|-.|...|-.=.+
T Consensus 123 ~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 123 ELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred hhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeeccEEEEeeeee
Confidence 9988887777666665 45556666555566666655432111 11111211 1123344555545555555555
Q ss_pred CcEEEEeCCCCcEEEEEe------------ccCCCeeEEEEEecC-ceeeec
Q 014475 290 GMVRVWDPITHNIVRMFR------------LAKGPVNNILVVRRP-LYLNLG 328 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~~~-~~l~~~ 328 (424)
..|...|..+|+.+..+. .+....+.+++.|++ +++++|
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 566677777777776654 234467889999987 566666
No 449
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.71 E-value=4.9 Score=35.89 Aligned_cols=106 Identities=14% Similarity=0.242 Sum_probs=51.4
Q ss_pred CCCEEEEecCCC-----cEEEEEccCcce---eeee---ccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcc
Q 014475 91 HGTYIAGGGQSG-----DIYMWEVASGRL---LKKW---HAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTV 154 (424)
Q Consensus 91 ~~~~l~~~~~dg-----~v~iwd~~~~~~---~~~~---~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 154 (424)
++.+++.|+.++ .+..||+.+.+. ...+ ...... .+++.. +++..+.|+.. ..+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~- 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACYK-DGTLYVGGGNRNGKPSNKSYLFNLET- 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEE-CCEEEEEeCcCCCccCceEEEEcCCC-
Confidence 566777777543 477777766543 1122 111111 122222 56677777642 3577788755
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCc
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGR 210 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~ 210 (424)
.....+..+... ......+...++ ++.+.|+.++ .+..||+.+.+
T Consensus 149 --------~~W~~~~~~p~~-~r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 149 --------QEWFELPDFPGE-PRVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred --------CCeeECCCCCCC-CCCcceEEEECC--EEEEEcCCCCccccceEEEecCCCe
Confidence 222222111111 111122223344 6777777654 25678887654
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.53 E-value=0.78 Score=41.47 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=100.1
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-ee-ccccC----CeE-EEEEccCCcEEEEeeCCCcEEEE-e
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KW-HAHYR----AVT-CLVFSEDGSFLISGSEDGCVRIW-S 150 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~----~i~-~~~~~~~~~~l~s~~~dg~i~iw-d 150 (424)
...+|..+-..|||+.+..-+. ..+.++++.+..... .+ ....+ .|+ .+..-..|.-+++++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4567888889999998887665 678999886653221 11 11111 122 12222345668888899988766 5
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
.+.... .....++.++-...++..+ .|+...+-+++-+..|++..+.....+.+..-..-..+..++++|.+
T Consensus 298 vr~~~~------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 298 VRRDGQ------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eecCCC------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc
Confidence 544211 1111222233223333333 34444477888889999988876554444333344477888999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCC
Q 014475 231 HVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
.++++- +.|.++++.+++..+
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee-cCCceEEEEecCCCC
Confidence 988764 457899999988754
No 451
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.46 E-value=5.7 Score=35.87 Aligned_cols=40 Identities=3% Similarity=0.018 Sum_probs=19.3
Q ss_pred CcEEEEecCCCceeeeeecC--cceeEEEECCCCCEEEEEeC
Q 014475 199 RTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~ 238 (424)
..+..||..+.+-...-..+ .........-++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 45788888765433221111 11111122235677777764
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=7.2 Score=40.56 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=82.9
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEec---ceeecCCCccccCCCCceeEEEEECCCCce----eee-----e-
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQV----EVK-----S- 77 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~-----~- 77 (424)
-|+.+.+|+.+++.....+.+....+-.|.-+. .-|.|.=+++++.+.. -.|.++-+...+. ... .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence 578999999999888877766554444443332 2355665666555554 6777776543221 111 1
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEc----cCc---c-e----------------eeeec-cccCCeEEEEEcc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG---R-L----------------LKKWH-AHYRAVTCLVFSE 132 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~----~~~---~-~----------------~~~~~-~~~~~i~~~~~~~ 132 (424)
..+-.|+|+....+|+.+.+| .|| .+|.+ ..+ + + +-.+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 125578899988888877765 556 44443 111 0 0 00112 3455777777766
Q ss_pred CCcEEEEeeCCCcEEEEeCCc
Q 014475 133 DGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 133 ~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.-+.+.+-+..|.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 666666777777777777754
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=3.3 Score=33.48 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=58.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCC--CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC--ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~ 80 (424)
++.-||-+....|++||+.+|+.+..-+-. ..-..+++ .-+.++-.-...+|.-..+|.++-+..-...-.
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-------~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-------KLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCcccccccee-------eccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 344455545567999999999988654322 11112222 222232222233377777777665554444444
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
+.=..++- |+..|+.+....+++.-|.++-....+
T Consensus 131 GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 131 GEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred Ccceeeec--CCcceEeeCCceEEEecCHHHhhhcce
Confidence 44455543 455577766666788888776544433
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.27 E-value=0.013 Score=52.70 Aligned_cols=151 Identities=15% Similarity=0.092 Sum_probs=100.6
Q ss_pred ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
+........|.|++.-++.++.+..+..||-.. . ... -....+...+++|..+++ ..++.+-..+.
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~ag-----------q-~~l-e~n~tg~aldm~wDkegd-vlavlAek~~p 98 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAG-----------Q-VIL-ELNPTGKALDMAWDKEGD-VLAVLAEKTGP 98 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhc-----------c-eec-ccCCchhHhhhhhccccc-hhhhhhhcCCC
Confidence 334445567888777788888888888898632 1 111 112344555677777664 55666777889
Q ss_pred EEEEecCCCceeee-eecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 201 CKVWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 201 v~iwd~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
+.+||+.+...... ......-.-+.|++....++.+...|.+.+++..... .+.....|...++++++.+
T Consensus 99 iylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR---------~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR---------RIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred eeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh---------hhhhhcccccceeEEEecc
Confidence 99999975432211 1122222237899999999999999999999998853 2333434889999999998
Q ss_pred CCEEEEeCCCCcEEE
Q 014475 280 GDLLISGSEDGMVRV 294 (424)
Q Consensus 280 ~~~l~t~~~dg~i~i 294 (424)
.++.+.++.|..+.+
T Consensus 170 Ed~vil~dcd~~L~v 184 (615)
T KOG2247|consen 170 EDYVILCDCDNTLSV 184 (615)
T ss_pred cceeeecCcHHHHHH
Confidence 777777776655433
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.10 E-value=0.96 Score=37.63 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=44.9
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCceeeee---------------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI---------------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (424)
+...+ .++++.+.+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~--~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG--SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCC--CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 33444 78999999999999999988765433 1224567777777776555443 567777777
Q ss_pred CCC
Q 014475 248 NAE 250 (424)
Q Consensus 248 ~~~ 250 (424)
+-.
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 456
>PRK05560 DNA gyrase subunit A; Validated
Probab=93.10 E-value=11 Score=38.29 Aligned_cols=249 Identities=12% Similarity=-0.015 Sum_probs=125.6
Q ss_pred CCCCCEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 89 NSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 89 s~~~~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
-++...++.-+.+|.|+--.+.+... ...++.. ..+..+........++..+..|.+.............
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 45567777888899888776543221 1112222 3344444444556677777788877765543211110
Q ss_pred ccccccceE---EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCC
Q 014475 160 SQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA 229 (424)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~ 229 (424)
......+ ..+...+.-+..+.+....+...++..+.+|.++--++..- .....+...+.+..+.....
T Consensus 574 --~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 574 --TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred --CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 0111111 12232333344444442112267899999999987765432 22222333444545445555
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-------Cc
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------HN 301 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-------~~ 301 (424)
...++..+..|.+..+....-..............+.....-+..+.+.+ +..++..+..|.++-..+.. ++
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 56677788888888777654322211111122223332223333344444 34788888889888776432 11
Q ss_pred EEEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 302 IVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 302 ~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
-+..++ ...+.+-.+........++..+.+|.+..++..
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 222222 222344443333333445666667776666554
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.02 E-value=6.4 Score=35.88 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCeEEEEEccCCcEEEEee-----------CCC-cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 123 RAVTCLVFSEDGSFLISGS-----------EDG-CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
.....|+|.++|+++++-. ..+ .|.+++-.++. ........+.........+++.+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-------G~~d~~~vfa~~l~~p~Gi~~~~~G--- 83 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-------GKYDKSNVFAEELSMVTGLAVAVGG--- 83 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-------CCcceeEEeecCCCCccceeEecCC---
Confidence 4567789999888776642 223 67666543311 1111122232233345677887664
Q ss_pred EEEEEeCCCcEEEEecCCC-----ce--e-eeeec-----CcceeEEEECCCCCEEEEEe
Q 014475 191 TIVSASEDRTCKVWSLLKG-----RL--L-RNIVF-----PSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~-----~~--~-~~~~~-----~~~i~~~~~~~~~~~l~~~~ 237 (424)
|++++.....++.|.... +. + ..+.. ......++|.|+|.+.++-+
T Consensus 84 -lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 84 -VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 444444443334454321 11 1 11211 23477899999998766544
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.96 E-value=0.85 Score=41.23 Aligned_cols=243 Identities=11% Similarity=0.084 Sum_probs=132.6
Q ss_pred CCCCEEEEecCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccC--------CcEEEEeeCCCcEEEEeCCcccch
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSED--------GSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
|...+++.|..+|.+.+....-.. .-..+.... .-++..+. .++.+....+....++|.....+.
T Consensus 125 ~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~---~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~ 201 (733)
T COG4590 125 PGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGL---EPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQI 201 (733)
T ss_pred CCCceEEEeccCCeEEEEeccccccCCCCCccCCCCC---CccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhh
Confidence 356688999999999998753211 111111111 11222222 223444555555556655432222
Q ss_pred hcccc-cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-eec--Cc----cee-EEEECC
Q 014475 158 CESQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IVF--PS----VID-AIALDP 228 (424)
Q Consensus 158 ~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~--~~----~i~-~~~~~~ 228 (424)
...+. .....+..+......+..+-..|++ +.+..-+. ..+.++++.+...... +.. ++ .|+ .+..-.
T Consensus 202 L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg--~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~ 278 (733)
T COG4590 202 LRGDRTTQQEIIRLLSVPFSDVSQLLLTPDG--KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS 278 (733)
T ss_pred hhcccCchhhhhhhcCCCccchHhhEECCCC--CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh
Confidence 11111 1111222344455677788888998 66655554 6788888876543221 111 11 122 122233
Q ss_pred CCCEEEEEeCCCcEEEE-EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475 229 AEHVFYAGSRDGSIYIA-ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~ 306 (424)
.|.-+++++.||-|..| |.+..... ....+..++-...++..+.-.. .+-+++-+..|++.++.....+.+-.-
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p----~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~ 354 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQP----HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE 354 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCC----cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh
Confidence 56678889999988876 44443211 1122333333334454444333 567788888999998875554443322
Q ss_pred eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
. .-.....+++||.+.+|++- +.|.++++.+++..+
T Consensus 355 ~-~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 355 R-AYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred h-hhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 2 22367788999999999875 456788888776544
No 459
>PLN02193 nitrile-specifier protein
Probab=92.94 E-value=8.6 Score=36.47 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=52.1
Q ss_pred eEEEEEeCCC-----cEEEEecCCCceeeeee-----cCcceeEEEECCCCCEEEEEeCC----CcEEEEEcCCCCCCCC
Q 014475 190 ATIVSASEDR-----TCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAESPSTS 255 (424)
Q Consensus 190 ~~l~~~~~d~-----~v~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~ 255 (424)
++.+.|+.++ .+..||+.+.+-...-. ....-..++. -+++.++.++.+ ..+.+||+.+..
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~---- 354 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK---- 354 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE----
Confidence 6677776543 46778877654322111 0011111222 256677777655 468899988764
Q ss_pred CcCceeeeeecc--cCcCeEEEEecCCCEEEEeCCC--------------CcEEEEeCCCCc
Q 014475 256 SYGMHIIGSLSD--HSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN 301 (424)
Q Consensus 256 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~t~~~d--------------g~i~iwd~~~~~ 301 (424)
+..+..... ......+++...+++++.|+.. ..+.++|+.+.+
T Consensus 355 ---W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 355 ---WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ---EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 232222100 0111122222236777788753 247788887654
No 460
>PLN02153 epithiospecifier protein
Probab=92.66 E-value=7.4 Score=35.05 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCCEEEEecCC-------CcEEEEEccCcceeeeecc---ccC---CeEEEEEccCCcEEEEeeCC-----CcEEEEeCC
Q 014475 91 HGTYIAGGGQS-------GDIYMWEVASGRLLKKWHA---HYR---AVTCLVFSEDGSFLISGSED-----GCVRIWSLL 152 (424)
Q Consensus 91 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~---~~~---~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 152 (424)
++.+++.|+.+ ..+.+||+.+.+-...-.. ... ....+.+ +++.++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666652 2578888876543221110 010 1122222 46677777753 246778875
Q ss_pred c
Q 014475 153 T 153 (424)
Q Consensus 153 ~ 153 (424)
+
T Consensus 110 t 110 (341)
T PLN02153 110 K 110 (341)
T ss_pred C
Confidence 4
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.63 E-value=3.3 Score=30.92 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=65.5
Q ss_pred eEEEEEeCCCcEEEEecCC--------CceeeeeecCcceeEEEECC-----CCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 190 ATIVSASEDRTCKVWSLLK--------GRLLRNIVFPSVIDAIALDP-----AEHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
.-|++++..|.|.|++... ...+..+.....|++++-.| ....|+.|+ ...+..||+..+...
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~--- 86 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL--- 86 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence 5678888889999998763 33556677788888887544 345666666 457999999886421
Q ss_pred cCceeeeeecccCcCeEEEEecC-----CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 257 YGMHIIGSLSDHSKAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
..+.-...|+++.+-. ..+++.| .+..|.-||..-.+.
T Consensus 87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEI 129 (136)
T ss_pred -------hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEE
Confidence 2223346677776633 3445554 467788787553333
No 462
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.63 E-value=8.1 Score=35.39 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred EEEeecCCCCCceEEEeCCCC-ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----------eeEEEEECCCC
Q 014475 3 LLIASSSVADTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----------GSILYWSWSKP 71 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----------g~i~vwd~~~~ 71 (424)
++++.|. .+..+.++|+... ..-..+.........-.++ ...+++..+.+|... ..+..||..+.
T Consensus 41 iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~---v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 41 VYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA---AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred EEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceE---EEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 4555555 5666778887532 1122222211111111111 234566777766431 24667787665
Q ss_pred ceeeeec-CCCCee-EEEEC-CCCCEEEEecCC
Q 014475 72 QVEVKSL-PAEPIK-PIAAN-SHGTYIAGGGQS 101 (424)
Q Consensus 72 ~~~~~~~-~~~~v~-~~~~s-~~~~~l~~~~~d 101 (424)
+...... ...... ..+.. -++++.+.|+.+
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 4332221 111111 11222 467778887754
No 463
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.21 E-value=6.6 Score=33.38 Aligned_cols=243 Identities=12% Similarity=0.025 Sum_probs=147.2
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
....-..++-.|||..-.++...+.|--.|..+|+....--+.......|..-||+..-++-+.. -|.-.|.++...
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-- 136 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-- 136 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce--
Confidence 34566788889999999998888889889999998776655566667788888988776664433 444455533210
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~ 236 (424)
.......+.-........|.+.+ ++-+++.. |.---.|..+ ..+..+. .......+|..|+|...++.
T Consensus 137 ------t~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 137 ------TRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred ------EEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEe
Confidence 00111122234556667777776 55555542 2211222211 1223332 34567789999999998888
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE--EeccCCCe
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPV 313 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~v 313 (424)
-.++.|-..|...... +.+..-......-..+-.+| ++.-+|....+.+..+|..+.. -.+ +.+.+..-
T Consensus 207 lagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp 278 (353)
T COG4257 207 LAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP 278 (353)
T ss_pred ccccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence 7788888777766531 11111122122334444456 8888887788889999877544 333 33333455
Q ss_pred eEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 314 NNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 314 ~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
.++.....++.-++--..|.|.-+|.++.
T Consensus 279 ys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 279 YSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ceeeeccCCcEEeeccccCceeecCcccc
Confidence 66667766766665555566666665543
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.03 E-value=0.74 Score=38.29 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=47.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeee---------------cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS---------------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~ 110 (424)
+...++++++...+ |.+++||+.+.+..... .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 45678888888887 99999999987755433 2345778888888887766644 5778888764
Q ss_pred Cc
Q 014475 111 SG 112 (424)
Q Consensus 111 ~~ 112 (424)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 33
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.80 E-value=6.2 Score=32.27 Aligned_cols=101 Identities=6% Similarity=0.090 Sum_probs=60.7
Q ss_pred CccccCCCCceeEEEEECCCCc--eeeeecCCCCeeEEEECCCCCEEEEecCC---C---cEEEE---Ecc--Ccceee-
Q 014475 51 QLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS---G---DIYMW---EVA--SGRLLK- 116 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g---~v~iw---d~~--~~~~~~- 116 (424)
+.|+.+... +.|.+|++.... .......-+.|..+.++..|++|++--.+ . .+++| +.. ....+.
T Consensus 29 d~Lfva~~g-~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASG-CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCC-CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444343333 789999998443 33445566899999999999999986322 2 45665 221 111111
Q ss_pred eecc---------------------ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 117 KWHA---------------------HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 117 ~~~~---------------------~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.+-+ -..++.+++-.|-..-|+.|+. +.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEE
Confidence 1111 1346778888884334555554 4899998854
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=2.9 Score=43.24 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=95.1
Q ss_pred CCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEc--------cCCcEEEEeeCCCcEEEE
Q 014475 79 PAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--------EDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 79 ~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l~s~~~dg~i~iw 149 (424)
+...-..+-+-|. ++.-++ -|+.+.+|+.+++.....+.+-...|..+..- |.=++++.-+.--.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 3333344445554 333333 47789999999988888887777777776642 233444444445567777
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC----CC---c-e----------
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL----KG---R-L---------- 211 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~----~~---~-~---------- 211 (424)
-+.-.........-. ....+......|+++....+| + ++-++.|| .+|.+. .+ + +
T Consensus 155 gV~~~~~~~~~~~f~--~~~~i~~dg~~V~~I~~t~nG--R-IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFN--TSFKISVDGVSVNCITYTENG--R-IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred EEEeccccCcccccc--cceeeecCCceEEEEEeccCC--c-EEEeecCC--CEEEEEEeccCchhhcccccccCchhHH
Confidence 553221111100000 012223345667788755555 4 45555566 444431 10 1 0
Q ss_pred -------eeee-ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 212 -------LRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 212 -------~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
.... .+..+|..+++......+++-+..|.|.+|++...
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 0111 13568999999999999999999999999999874
No 467
>PLN02153 epithiospecifier protein
Probab=91.38 E-value=11 Score=34.07 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=46.6
Q ss_pred ceEEEeCCCCceEEEeeCCC-CCC-C--ceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeec------C
Q 014475 14 GIGCWDLESGAEQLRYKSCA-SPP-H--GLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSL------P 79 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~-~~~-~--~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~------~ 79 (424)
.+.++|..+.+-.. ..... .+. . ...+ ..-+++.++.+|.++ ..+.++|..+.+-..... +
T Consensus 51 ~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~----~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p 125 (341)
T PLN02153 51 DLYVFDFNTHTWSI-APANGDVPRISCLGVRM----VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP 125 (341)
T ss_pred cEEEEECCCCEEEE-cCccCCCCCCccCceEE----EEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC
Confidence 57888888765432 22111 111 1 1111 223566667776532 257788877654332211 1
Q ss_pred CCCeeEEEECCCCCEEEEecCC-----------CcEEEEEccCcc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR 113 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~d-----------g~v~iwd~~~~~ 113 (424)
.......+..-++++.+.|+.+ ..+.+||+++.+
T Consensus 126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 1111212222356677777653 247788887654
No 468
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.31 E-value=13 Score=34.79 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=24.7
Q ss_pred cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
..|.+++..+ .+.+++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 4499999999 889999999999999999853
No 469
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.18 E-value=10 Score=33.49 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=116.5
Q ss_pred CCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcc-----cc
Q 014475 91 HGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECES-----QR 162 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-----~~ 162 (424)
++++|+.|+++| +.+.++.. ++..+.+ +...|+++...+..+.|++-+ ....++.+++......... ..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 336899999998 55555554 2333332 456899999998777665544 3445999999654421100 00
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC----ceeeee-----ecCcceeEEEECCC--CC
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNI-----VFPSVIDAIALDPA--EH 231 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~-----~~~~~i~~~~~~~~--~~ 231 (424)
.... ....-.+.....-..+.... ...++++....+|.++..... ...+.+ ..+.++..+..+++ ..
T Consensus 89 ~~~~-~~~~~~~tkGc~~~~v~~~~-~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T smart00036 89 IRKN-VLTKIPDTKGCHLCAVVNGK-RSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERP 166 (302)
T ss_pred cccc-ceEeCCcCCceEEEEEEcCC-CcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccce
Confidence 0011 11122333333333333322 234455555667777643321 112211 12233444444443 56
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecCCCEEEEeCCCCcEEEEeCCCC-cEEE--EEe
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPITH-NIVR--MFR 307 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~--~~~ 307 (424)
.+.+|+..+...++++.......... ..-....... .++.......+.+|++-. + ...+-|.. | +..+ .+.
T Consensus 167 ~lcvG~~~~~~~~~~~~~~~~~~~d~--sl~~~~~~~~~~p~~i~~l~~~e~Llc~~-~-~~v~Vn~~-G~~~~r~~~l~ 241 (302)
T smart00036 167 GICIGSDKGGGDVVQFHESLVSKEDL--SLPFLSEETSLKPISVVQVPRDEFLLCYD-E-FGVFVNLY-GKRRSRNPILH 241 (302)
T ss_pred EEEEEEcCCCCeEEEEeecccccccc--cccccccccccCceEEEEECCCeEEEEEC-c-EEEEEeCC-CCccccceEEE
Confidence 78888775345555554310000000 0000011111 344444444455555443 2 23444433 3 2211 222
Q ss_pred ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
-.+...++++.. .+|++-+ +..|.++++.++++.+.
T Consensus 242 -w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~ 277 (302)
T smart00036 242 -WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQE 277 (302)
T ss_pred -cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEE
Confidence 234556677663 5666655 45599999998865443
No 470
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.98 E-value=12 Score=34.11 Aligned_cols=200 Identities=17% Similarity=0.158 Sum_probs=103.3
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccc--cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL 168 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 168 (424)
+++ +.++..+|.|.-.|.+++..+.....- ...+..-.+..+|+ ++.++.+|.+..+|.+++.... .
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W---------~ 136 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVW---------S 136 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEE---------E
Confidence 454 444577888888888888765433222 12222222333565 7778888888888886543221 1
Q ss_pred EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc-eeEEEEC--CCCCEEEEEeC--CCcEE
Q 014475 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-IDAIALD--PAEHVFYAGSR--DGSIY 243 (424)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~--dg~i~ 243 (424)
...... ..+..-..-.+ ..+..++.++.+...|..+++.......... -...... .....++.+.. ++.+.
T Consensus 137 ~~~~~~-~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~ 212 (370)
T COG1520 137 RNVGGS-PYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILY 212 (370)
T ss_pred EecCCC-eEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEE
Confidence 111110 11111112222 3444555778888888888888776554321 1111111 13344555554 55666
Q ss_pred EEEcCCCCCCCCCcCceeeeeecccCcC--eEEEEecC---CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
-.|..++....... .....+.... ...+...+ +.-+..++.++.+...|..+++.+-.+...
T Consensus 213 a~~~~~G~~~w~~~----~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 213 ALNAEDGTLKWSQK----VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EEEccCCcEeeeee----eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 66666654221100 0001111100 01111111 344466677888999999999999888754
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.82 E-value=12 Score=33.51 Aligned_cols=62 Identities=6% Similarity=0.109 Sum_probs=33.7
Q ss_pred eEEEEEeC-----CCcEEEEecCCCceeee--eecCcceeEEEECCCCCEEEEEeCCC----cEEEEEcCCCC
Q 014475 190 ATIVSASE-----DRTCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRDG----SIYIAALNAES 251 (424)
Q Consensus 190 ~~l~~~~~-----d~~v~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 251 (424)
...+.|+. ...+..||+.+.+-... +.........+...++++++.|+.++ .+..||..+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 56666664 23588888876543322 11111222222334667777777654 35678877653
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.74 E-value=10 Score=32.85 Aligned_cols=218 Identities=14% Similarity=0.110 Sum_probs=120.2
Q ss_pred CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-----CcCceeEEEEEEcC----------
Q 014475 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-----HTLRITDIVIGYGG---------- 187 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~---------- 187 (424)
..-+.|+++|.+.+-++....+...+||........ .....+..+.. .....+.+.|+...
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g----~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPL----VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccC----CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 345789999988888887778899999986211100 11112222221 23456666665322
Q ss_pred ceeEEEEEeCCCcEEEEecCCCce-----eeeee---cCcceeEEEECC--CCCEEEEE-eCCCcEEEEEcCCCCCCCC-
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRL-----LRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTS- 255 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~- 255 (424)
....++.+++||+|.-|...-... ...+. .......+++.. .+.+|+.+ -..++|.+||-.-......
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 013478889999999998543222 11111 122234455543 35555554 4678999998765432110
Q ss_pred -C--------cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--cCCCeeEEEEEe---
Q 014475 256 -S--------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AKGPVNNILVVR--- 320 (424)
Q Consensus 256 -~--------~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~s~--- 320 (424)
. +..--++.+ +..-.|+-..-.+ .+.=+.|-.-|.|-+||+. |+.++++.. .-..-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CccCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 0 000000111 0111122222222 2233344456789999965 888888852 223446677755
Q ss_pred ---cCceeeeccCCCceeeccCCCCCCCC
Q 014475 321 ---RPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 321 ---~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
.+..|+----||+|..+|..+++..-
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceee
Confidence 45677766679999999988765443
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.41 E-value=13 Score=36.28 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=49.2
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
....++++.-+|.++.++.+..||.|.+|+......-+.. ....+-..+.|...| |+++..|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheeec
Confidence 3456788888999999999999999999998655432211 122344556676444 677777888888864
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.21 E-value=6.9 Score=33.92 Aligned_cols=102 Identities=9% Similarity=0.061 Sum_probs=60.2
Q ss_pred CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee------CCCcEEEEeCCcccchhcccccccceEEe-e-cC
Q 014475 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYLHS-F-TG 173 (424)
Q Consensus 102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~ 173 (424)
..|++||..+.+-...-.+-.+.|+.+.|..+.++++.|. ....+..||..+. ....... . ..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~---------~w~~~~~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ---------TWSSLGGGSSNS 86 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC---------eeeecCCccccc
Confidence 4599999877765555455668899999987777776664 3556888998551 1111111 0 12
Q ss_pred CcCceeEEEEEEcCceeEEEEEe-C--CCcEEEEecCCCcee
Q 014475 174 HTLRITDIVIGYGGVSATIVSAS-E--DRTCKVWSLLKGRLL 212 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~-~--d~~v~iwd~~~~~~~ 212 (424)
-.+++..+.+......+..+.|. . +..|..||=.+...+
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 24677777775444334554444 2 334666765444333
No 475
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.18 E-value=9.2 Score=31.34 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=87.7
Q ss_pred CEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEccCCcEEEEeeCCC------cEEEE-eCCcccchhccccc
Q 014475 93 TYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG------CVRIW-SLLTVFEECESQRA 163 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~~~~~~~~~~~ 163 (424)
..|+.+.....|.+|++.+ .+....+.. -+.|..+.++..|++++|--.+. .+|+| |.+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~--------- 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ--------- 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---------
Confidence 3444435567899999983 344555653 37899999999999999875432 34554 22110
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (424)
.....++.. ... | .-++++..... ...-.+-+++...++.+++..|-..-|++|+ ++.+.
T Consensus 99 --------~~~~~~v~v-Ria--G---~~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~ 158 (215)
T PF14761_consen 99 --------KEENSPVRV-RIA--G---HRVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLV 158 (215)
T ss_pred --------cccCCcEEE-EEc--c---cccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEE
Confidence 011122211 110 0 01111111111 1112234445667889999999555566666 45788
Q ss_pred EEEcCCCCCCCCCcC-ceeeeeecccCc--CeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475 244 IAALNAESPSTSSYG-MHIIGSLSDHSK--AVTCLAYSTGDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 244 i~d~~~~~~~~~~~~-~~~~~~~~~~~~--~i~~~~~~~~~~l~t~~~dg~i~iwd~ 297 (424)
+|.+........... ......+-.|.. .+..+++. ++++|..+ +-.+++..+
T Consensus 159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic-~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC-EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE-eeEEEEec-CCEEEEEEE
Confidence 888876542111000 000011112222 24445554 67777776 445666554
No 476
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.84 E-value=14 Score=33.07 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=110.1
Q ss_pred EEecceeecCCCccccCCCCceeEEEEECCCCc-eeeee------cCCCCeeEEEECCC----CCEEEEecCC-------
Q 014475 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKS------LPAEPIKPIAANSH----GTYIAGGGQS------- 101 (424)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~------~~~~~v~~~~~s~~----~~~l~~~~~d------- 101 (424)
..++ |.|+|+++++- .. |.|.+++.+... ..... ........++++|+ +.+.++.+..
T Consensus 5 ~~~a--~~pdG~l~v~e-~~-G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 5 RSMA--FLPDGRLLVAE-RS-GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEE--EETTSCEEEEE-TT-TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred eEEE--EeCCCcEEEEe-CC-ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4566 99998876654 45 999999933332 11111 23567899999994 3333333321
Q ss_pred -CcEEEEEccCc-------cee-eeecc---ccCCeEEEEEccCCcEEEEeeCCCc-------------EEEEeCCcccc
Q 014475 102 -GDIYMWEVASG-------RLL-KKWHA---HYRAVTCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFE 156 (424)
Q Consensus 102 -g~v~iwd~~~~-------~~~-~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~ 156 (424)
..|.-|....+ +.+ ..+.. ....-..|.|.||+.+.++.+..+. |.-.+......
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 13444444333 111 11121 2234567999999987777665433 22222211000
Q ss_pred hhccc---ccccceEEeecCCcCceeEEEEEEc-CceeEEEE-EeCCCcEEEEecCCCc---------------------
Q 014475 157 ECESQ---RASHLYLHSFTGHTLRITDIVIGYG-GVSATIVS-ASEDRTCKVWSLLKGR--------------------- 210 (424)
Q Consensus 157 ~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~-~~~d~~v~iwd~~~~~--------------------- 210 (424)
..... ......+ --.++. ....++|.|. + .+.++ .+.++.=.|--+..+.
T Consensus 161 ~dnP~~~~~~~~~~i-~A~GlR-N~~~~~~d~~tg--~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEI-YAYGLR-NPFGLAFDPNTG--RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTE-EEE--S-EEEEEEEETTTT--EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEE-EEeCCC-ccccEEEECCCC--cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 0000001 011222 3356788887 4 33332 2222222222222111
Q ss_pred --------eeeeeecCcceeEEEECC-------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 211 --------LLRNIVFPSVIDAIALDP-------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 211 --------~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
+...+.+...+..+.|.+ .+.++++....+.|....++..... ......+......+..+
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EEEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCceEE
Confidence 112222334555666543 3455666666678888877644210 01111223444578999
Q ss_pred EecC-CCEEEEeCCCCcEE
Q 014475 276 AYST-GDLLISGSEDGMVR 293 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~ 293 (424)
++.| |.++++.+.+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999 77777777777763
No 477
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=89.48 E-value=14 Score=32.55 Aligned_cols=238 Identities=8% Similarity=0.008 Sum_probs=114.0
Q ss_pred CCCccccCCCCceeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccCccee-----------
Q 014475 49 SSQLREQPSASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLL----------- 115 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~----------- 115 (424)
++++++.|..+ |...+. .... ....+..+..+|+++...+.-+.|++- +....++.+++..-...
T Consensus 12 ~~~~lL~GTe~-Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEE-GLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCC-ceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 33577777775 655544 5443 344556677899999999877766554 33445999998433210
Q ss_pred ----eeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee----cCCcCceeEEEEEEc
Q 014475 116 ----KKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----TGHTLRITDIVIGYG 186 (424)
Q Consensus 116 ----~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ 186 (424)
...-.|............. ..++++....+|.++........ ....+.+ ..-..++..+..+++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~-------f~~~k~~~~~~~~~~~~~~~~~~~~~ 162 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK-------FKLFKSKFLFPLISPVPVFVELVSSS 162 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh-------hhhhcccccccCCCCccceEeeeccc
Confidence 0111233333333333211 23344444567777655332111 1111110 011223333333333
Q ss_pred CceeEEEEEeCCCcEEEEecCC--Ccee----eeeec--C-cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 187 GVSATIVSASEDRTCKVWSLLK--GRLL----RNIVF--P-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~--~~~~----~~~~~--~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
.....+..|+..+...++++.. .... ..... . .++....+ +++.++++ -.+ .....|......
T Consensus 163 ~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~~~-~~v~Vn~~G~~~----- 234 (302)
T smart00036 163 FERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-YDE-FGVFVNLYGKRR----- 234 (302)
T ss_pred ccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-ECc-EEEEEeCCCCcc-----
Confidence 2225667776643344444432 1100 00011 1 23333333 34444443 333 344455543110
Q ss_pred CceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
.....+ .-...+.++++.. .+++.-+.+ .|.++++.+++.++++..
T Consensus 235 --~r~~~l-~w~~~p~~~~~~~-pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 235 --SRNPIL-HWEFMPESFAYHS-PYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred --ccceEE-EcCCcccEEEEEC-CEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 001111 1234556777764 566666544 499999999999998874
No 478
>PRK13684 Ycf48-like protein; Provisional
Probab=89.32 E-value=16 Score=32.84 Aligned_cols=151 Identities=9% Similarity=0.031 Sum_probs=82.1
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEE-EecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKV-WSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~i-wd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
...+.++.+.+++ .+++++ ..|.+.. +| ..++.-.... ....++.+.+.++++.++++. .|.+++=..+.+.
T Consensus 172 ~g~~~~i~~~~~g--~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG--KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC--eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCC
Confidence 4567888888775 555444 4554432 22 1222222222 456788999999998777654 5655432233322
Q ss_pred CCCCCcCceeeeee-cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceee
Q 014475 252 PSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLN 326 (424)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 326 (424)
. ++.+..- ......+.++.+.+ +..+ .++.+|.+. .....++.-..... -......+.|..+++.++
T Consensus 247 s------W~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 247 S------WSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred c------cccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 1 1111110 11224577888888 5554 455677554 34454544444321 223577888887766655
Q ss_pred eccCCCceeeccC
Q 014475 327 LGSFSNPHTSSRR 339 (424)
Q Consensus 327 ~~~~d~~i~iw~~ 339 (424)
.+..|.|.-|+-
T Consensus 319 -~G~~G~il~~~~ 330 (334)
T PRK13684 319 -LGQRGVLLRYVG 330 (334)
T ss_pred -ECCCceEEEecC
Confidence 456787776653
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.17 E-value=18 Score=33.30 Aligned_cols=148 Identities=8% Similarity=0.039 Sum_probs=78.1
Q ss_pred EEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
.+...+++ .+++.+.....++-||-.... ..........+..+.+.+++..++++ ..|.+.. ....+..-..
T Consensus 243 ~v~~~~dG--~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~--- 315 (398)
T PLN00033 243 TVNRSPDG--DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED--- 315 (398)
T ss_pred eEEEcCCC--CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc---
Confidence 34444554 555555544334445432111 12223355678899999999888766 4555433 3333210000
Q ss_pred ceeeeeec--ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe---ccCCCeeEEEEEecCceeeeccCCCc
Q 014475 259 MHIIGSLS--DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 259 ~~~~~~~~--~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
....... .....+..+.+.+++.++.++..|.+.... ..|+.-.... .-..+...+.|.++++-+++| .+|.
T Consensus 316 -~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 316 -FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV 392 (398)
T ss_pred -cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence 0111111 122458888888844455555678766654 4454433332 234578899998876666554 6676
Q ss_pred eeec
Q 014475 334 HTSS 337 (424)
Q Consensus 334 i~iw 337 (424)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 5543
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=22 Score=37.12 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=35.4
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
+.+...+.+.+|+.........+... ...+.+++..++++..||.+..||...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 213 LIGFNRGLVVIKDRASKYVQSAYLPN----GQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeeeeeeehhcccccchhhcccc----cccCccCCceEEEEEecCCEEeeecCCCce
Confidence 34444555666664433333333211 111278899999999999999999998743
No 481
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.05 E-value=17 Score=32.93 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=105.0
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--cccCCCCc---eeEEEEECCC--Cceeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASS---GSILYWSWSK--PQVEVK 76 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~~~---g~i~vwd~~~--~~~~~~ 76 (424)
+++... +++-+.+||+. |+.++.+.. +..+.|-. ...|.-.|+. |++++..+ .+|++|.++. +.....
T Consensus 70 lIigTd-K~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDv-rygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 70 LIIGTD-KKGGLYVYDLD-GKELQSLPV--GRPNNVDV-RYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp EEEEEE-TTTEEEEEETT-S-EEEEE-S--S-EEEEEE-EEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred eEEEEe-CCCCEEEEcCC-CcEEEeecC--CCcceeee-ecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 456666 78889999987 777777742 22222221 1113334443 44444321 5799998764 322211
Q ss_pred ec-------CCCCeeEEEE--CC-CCC-EEEEecCCCcEEEEEcc---Cc----ceeeeeccccCCeEEEEEccCCcEEE
Q 014475 77 SL-------PAEPIKPIAA--NS-HGT-YIAGGGQSGDIYMWEVA---SG----RLLKKWHAHYRAVTCLVFSEDGSFLI 138 (424)
Q Consensus 77 ~~-------~~~~v~~~~~--s~-~~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~l~ 138 (424)
.. ....+..+++ +| +|. +.++...+|.+..|.+. .+ +.++.+.. ...+..+........|.
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 11 1124566665 44 454 55667788988888774 22 34566654 34688888888778899
Q ss_pred EeeCCCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCC
Q 014475 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLK 208 (424)
Q Consensus 139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~ 208 (424)
.+-++.-|.-|+.+.... .....+.... .....|-.|++-. ++.+.++++.-.+++..+|+.+.
T Consensus 224 vgEE~~GIW~y~Aep~~~------~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGG------NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEETTTEEEEEESSCCC-------S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCccEEEEEecCCCCC------CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 998887676666642110 1122222222 2456777787754 34434555555677899999764
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.96 E-value=14 Score=34.60 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=42.7
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEcc---------Ccceeee---e--------ccccCCeEEEEEccCC---cEEE
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLKK---W--------HAHYRAVTCLVFSEDG---SFLI 138 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~~~~---~--------~~~~~~i~~~~~~~~~---~~l~ 138 (424)
.|..+..++.|..++..|.+|.+.++=.+ .|+.... + ....-.+..++|+|+. .+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999999866554321 2211110 0 0111234556677743 4566
Q ss_pred EeeCCCcEEEEeCCc
Q 014475 139 SGSEDGCVRIWSLLT 153 (424)
Q Consensus 139 s~~~dg~i~iwd~~~ 153 (424)
.-+.|..+++||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 666677777777743
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=88.81 E-value=29 Score=35.21 Aligned_cols=199 Identities=15% Similarity=0.180 Sum_probs=106.8
Q ss_pred EEEecCCCcEEEEEccCcceeee--------eccccCCeEEEEEc--cCCcEEEEeeCC---CcEEEEeCCcccc--hhc
Q 014475 95 IAGGGQSGDIYMWEVASGRLLKK--------WHAHYRAVTCLVFS--EDGSFLISGSED---GCVRIWSLLTVFE--ECE 159 (424)
Q Consensus 95 l~~~~~dg~v~iwd~~~~~~~~~--------~~~~~~~i~~~~~~--~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~ 159 (424)
+++....|.+++|-.+....... +..-...|+..++. .+|+.++.++.+ +.|++|.+.-... ...
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence 44456789999997733221111 11234456655554 567666555554 7888876532111 111
Q ss_pred cccc--ccceEEee-c-----------------CCcCceeEEEEEE-----cCceeEEEEEeC----CCcEEEEecCCCc
Q 014475 160 SQRA--SHLYLHSF-T-----------------GHTLRITDIVIGY-----GGVSATIVSASE----DRTCKVWSLLKGR 210 (424)
Q Consensus 160 ~~~~--~~~~~~~~-~-----------------~~~~~i~~~~~~~-----~~~~~~l~~~~~----d~~v~iwd~~~~~ 210 (424)
.... ....+... . ..-..++.+.+-+ +.....+++.+. ...|.-|.++...
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence 1110 00011100 0 0223566777765 222244444432 3468899886432
Q ss_pred e-ee--------------------------eeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC----cCc
Q 014475 211 L-LR--------------------------NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGM 259 (424)
Q Consensus 211 ~-~~--------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~ 259 (424)
. ++ .+..+..|.+++...-+..++....||+|.++|..+-+..... ...
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~ 304 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP 304 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc
Confidence 1 10 0113456778888788889999999999999998876443322 111
Q ss_pred eeeeeec------ccCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475 260 HIIGSLS------DHSKAVTCLAYST-GDLLISGSEDGMVR 293 (424)
Q Consensus 260 ~~~~~~~------~~~~~i~~~~~~~-~~~l~t~~~dg~i~ 293 (424)
..+..+. .+..++..++||| +..++.-..+|.+.
T Consensus 305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 1111111 1122455688999 88888888888866
No 484
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.78 E-value=1.1 Score=25.56 Aligned_cols=41 Identities=7% Similarity=-0.112 Sum_probs=25.8
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEE
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~ 88 (424)
|+++.+.++...++.|.++|..+.+.............+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 46676776665568999999877765544433333444444
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.35 E-value=15 Score=31.85 Aligned_cols=115 Identities=7% Similarity=0.156 Sum_probs=67.8
Q ss_pred CcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe------CCCcEEEEEcCCCCCCCCCcCceeeee-e-cccC
Q 014475 199 RTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS-L-SDHS 269 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~~ 269 (424)
..|++||..+.+-...-. ..+.|+.+.|..+.++++.|. ....+..||+.+.. +..... . ..-.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------WSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------eeecCCcccccCC
Confidence 458999987665433322 567899999997777777664 34578889988864 111211 1 1234
Q ss_pred cCeEEEEecC---CCEEEEeC-C--CCcEEEEeCCCCcEEEE-EeccCCCeeEEEEEe
Q 014475 270 KAVTCLAYST---GDLLISGS-E--DGMVRVWDPITHNIVRM-FRLAKGPVNNILVVR 320 (424)
Q Consensus 270 ~~i~~~~~~~---~~~l~t~~-~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~ 320 (424)
++|+.+.+.. .++.+.|. . +..|..||=.+...+.. .......|..+.+-|
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 7788887744 44555554 2 33477787555544444 222234555555443
No 486
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.18 E-value=25 Score=33.73 Aligned_cols=242 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEECCCCCEEEEecCCCcEEEEEccC-cceeeeeccc-------cCCeEEEEEcc-----CCcEEEEeeCCCc----EEE
Q 014475 86 IAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-------YRAVTCLVFSE-----DGSFLISGSEDGC----VRI 148 (424)
Q Consensus 86 ~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-------~~~i~~~~~~~-----~~~~l~s~~~dg~----i~i 148 (424)
++..|.++.++.+..+|.+.|+-++. .........+ ...|..++|.. +...++.--.+.. +..
T Consensus 49 l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~ 128 (504)
T PF10433_consen 49 LAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVT 128 (504)
T ss_dssp EEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEE
T ss_pred EEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEE
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC----ceeeeeec----Ccc
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNIVF----PSV 220 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~----~~~ 220 (424)
++.......................+..+ .-+.--|.+ .-.+..+.++.+.+-+.... +....-.. ..-
T Consensus 129 y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~LIPlp~~--~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (504)
T PF10433_consen 129 YEWSLDDGLNHVISKSTLPIRLPNEDELP-SFLIPLPNP--PGGLLVGGENIIIYKNHLIGSGDYSFLSIPSPPSSSSSL 205 (504)
T ss_dssp EE--------EETTTTEEEE--EEEE-TT-EEEEEE-TT--T-SEEEEESSEEEEEE------TTEEEEE--H-HHHTS-
T ss_pred EeeecccccceeeeeccccccccccCCCc-cEEEEcCCC--CcEEEEECCEEEEEecccccccccccccccCCccCCCce
Q ss_pred eeEEEE-------CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCC--EEEEeC--C
Q 014475 221 IDAIAL-------DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGD--LLISGS--E 288 (424)
Q Consensus 221 i~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--~l~t~~--~ 288 (424)
+.+... ..++..++.+..+|.++...+..... ......-+. ....+++.+-... +++.|+ .
T Consensus 206 ~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~g 278 (504)
T PF10433_consen 206 WTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFG 278 (504)
T ss_dssp EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS
T ss_pred EEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecC
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-----------ceeeecc--CCCceeecc
Q 014475 289 DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-----------LYLNLGS--FSNPHTSSR 338 (424)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-----------~~l~~~~--~d~~i~iw~ 338 (424)
|+.+.-|....-+.+.++. .-+||..++..+.. +.+++++ .+|.+++..
T Consensus 279 ds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 279 DSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp -EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred CcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
No 487
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.05 E-value=28 Score=34.10 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=86.5
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee--eecc-ccC------CeEEEEEccCCcEEEEeeC-CC---c
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHA-HYR------AVTCLVFSEDGSFLISGSE-DG---C 145 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~-~~~------~i~~~~~~~~~~~l~s~~~-dg---~ 145 (424)
..+.|..+.|.++++.+++...+|.|.+||...+.... .+.. +.. -|.....-....++++.+. ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 46789999999999999999999999999994332211 2211 111 1222221112344554444 22 3
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCccee---
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--- 222 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~--- 222 (424)
.+++.+.... .....+.....+........|+... ..|.-- .+++|.+|++...+..+.+..+.-+.
T Consensus 208 ykL~~l~~~~-------~~~~El~s~~~e~~~~~~s~f~Y~~--G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~ 277 (670)
T PF10395_consen 208 YKLISLSNES-------SSIFELSSTILENFGLEDSKFCYQF--GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES 277 (670)
T ss_pred EEEEEeccCC-------cceEEeehheeccCCcccceEEEeC--CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence 5666661100 1111111111222223333444332 233333 67899999998888777776442222
Q ss_pred --EEEEC-CCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 223 --AIALD-PAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 223 --~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
.+.+. |..++++.+ .++.|++.|+.-..
T Consensus 278 ~~~vSl~~~s~nRvLLs-~~nkIyLld~~~~s 308 (670)
T PF10395_consen 278 DDLVSLKPPSPNRVLLS-VNNKIYLLDLKFES 308 (670)
T ss_pred ccceEeecCCCCeEEEE-cCCEEEEEeehhhh
Confidence 22332 344444443 35689999987754
No 488
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=87.08 E-value=38 Score=34.60 Aligned_cols=245 Identities=12% Similarity=0.090 Sum_probs=122.2
Q ss_pred eecCCCccccCCCCceeEEEEECCCCce---------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----- 111 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~----- 111 (424)
+.++...+++.+.+ |.|+--+...-.. .......+.+..+........++..+..|.+.......
T Consensus 492 li~~e~~~vllS~~-GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 492 LIARENVVVTLSHN-GYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred ccCcceEEEEEcCC-CEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 44555566666666 8888776543211 01112334555555555566666667778776665422
Q ss_pred ----ccee---eeeccccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 112 ----GRLL---KKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 112 ----~~~~---~~~~~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
|..+ ..+.....-+.++... .+...++..+.+|.++-.++........ .......+.. .+.+..+.
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r----~G~~aiklke-~D~lv~v~ 645 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRS----NGIIAIKLDD-GDELISVR 645 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhcc----CCcccccCCC-CCEEEEEE
Confidence 1222 1122222334445532 2556789999999999988754321110 1111112222 33444444
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCC---------CceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLK---------GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (424)
..... ..++..+..|.+..+.... |.....+.....|.++..-+++..++..+..|.++...+..-...
T Consensus 646 ~~~~~--d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 646 LTSGD--DEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EeCCC--CEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 44333 4566666677766665432 111122223344555544445557888888898888876543221
Q ss_pred CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
...........+......+..+...+ ...++..+.+|.+..++..
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 11000111112222223343433333 4456666667777666654
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.88 E-value=27 Score=32.71 Aligned_cols=115 Identities=8% Similarity=0.023 Sum_probs=60.7
Q ss_pred ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC----ceeEEEEEe
Q 014475 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG----VSATIVSAS 196 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~~ 196 (424)
.-...+.|+|.|++++|++--..|.|++++..+...... .................|+++|+- ...+|....
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~----~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV----FTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee----ecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 445678999999998776654469999997644211000 000000011136778899998873 113444332
Q ss_pred ----------CCCcEEEEecCCC--ce---eeeee-c----CcceeEEEECCCCCEEEEEeCC
Q 014475 197 ----------EDRTCKVWSLLKG--RL---LRNIV-F----PSVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 197 ----------~d~~v~iwd~~~~--~~---~~~~~-~----~~~i~~~~~~~~~~~l~~~~~d 239 (424)
....|.-|.+... .. ...+. . ...-..+.|.|+|.++++.+..
T Consensus 104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233444554321 11 11111 1 1235578899999866655443
No 490
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.86 E-value=33 Score=33.62 Aligned_cols=196 Identities=12% Similarity=0.045 Sum_probs=99.9
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCce----eeeecCCCCeeEEEECCCCCEEEEecC--CC--cEEEEEc
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ--SG--DIYMWEV 109 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg--~v~iwd~ 109 (424)
.+.+.+ .++++..+|....+...+.+..+..+.. .........++.-.|.+++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~a--vS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVA--VSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceE--EcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC
Confidence 455666 8899988887776534666665533322 1112234456777777776 3444422 22 2555542
Q ss_pred cCcceeee-ecccc-CCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 110 ASGRLLKK-WHAHY-RAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 110 ~~~~~~~~-~~~~~-~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+++.... ..... ..|..+..++||-.++.-.. .++|.+=-+....... . .......+......+.++.|.
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~---~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-V---SVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-E---EeeccEEeccCCCccceeEEc
Confidence 4433210 11222 37999999999988765443 3556665543311110 0 000111222223358899998
Q ss_pred EcCceeEEEEEe-CCCcEEEE--ecCCCceee-eeecCcceeEEEECCCCC-EEEEEeCCCcEE
Q 014475 185 YGGVSATIVSAS-EDRTCKVW--SLLKGRLLR-NIVFPSVIDAIALDPAEH-VFYAGSRDGSIY 243 (424)
Q Consensus 185 ~~~~~~~l~~~~-~d~~v~iw--d~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 243 (424)
.+. .+++.+. .++...+| ++....... ....-..+..++...+.. .++++..++.|.
T Consensus 516 ~~~--sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v~ 577 (599)
T PRK13613 516 GDS--QLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGIV 577 (599)
T ss_pred CCC--EEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCeE
Confidence 886 6655443 33233444 443222211 112334566666666655 455435566553
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.56 E-value=3.6 Score=39.90 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCc------Cc---eeeeee--------cccCcCeEEEEecC-----CCEEEE
Q 014475 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSY------GM---HIIGSL--------SDHSKAVTCLAYST-----GDLLIS 285 (424)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~---~~~~~~--------~~~~~~i~~~~~~~-----~~~l~t 285 (424)
++...++++..||.+............... .. ..+..+ .........++++. ..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 577788888899988888876522000000 00 000000 00112333344332 679999
Q ss_pred eCCCCcEEEEeCCCCcEEEEEe
Q 014475 286 GSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
.+.|+.+|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977664
No 492
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.49 E-value=40 Score=34.26 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=50.7
Q ss_pred CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE----e---------------ccCCCeeEEEEEecCceeeec
Q 014475 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF----R---------------LAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 269 ~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~----~---------------~~~~~v~~l~~s~~~~~l~~~ 328 (424)
.+.|.++.... +.+++..-.||+|.++|..+.+.+... . .+..++..++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 45678887777 889999999999999998877555444 1 011134468899999999999
Q ss_pred cCCCcee
Q 014475 329 SFSNPHT 335 (424)
Q Consensus 329 ~~d~~i~ 335 (424)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999855
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.37 E-value=29 Score=34.48 Aligned_cols=31 Identities=6% Similarity=0.037 Sum_probs=24.0
Q ss_pred ccCCeEEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 121 ~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
-...|...+|+.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 4567889999999987776666778887764
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.05 E-value=4.2 Score=22.98 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=25.7
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEE
Q 014475 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~ 226 (424)
.+++...++.|.++|..+++.+..+........+++
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 444455688999999999888888775555555554
No 495
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.05 E-value=2.8 Score=40.70 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=44.8
Q ss_pred cCCcEEEEeeCCCcEEEEeCCccc---chhccc-ccccc---eEE--------eecCCcCceeEEEEEE----cCceeEE
Q 014475 132 EDGSFLISGSEDGCVRIWSLLTVF---EECESQ-RASHL---YLH--------SFTGHTLRITDIVIGY----GGVSATI 192 (424)
Q Consensus 132 ~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~~---~~~--------~~~~~~~~i~~~~~~~----~~~~~~l 192 (424)
++...++.+..||.+......... ...... ..... .+. ...........+++.. +. .++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 233 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD--TFL 233 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT--TEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC--CEE
Confidence 366678888899999888775411 100000 00000 000 0011123344555554 33 799
Q ss_pred EEEeCCCcEEEEecCCCceeeeee
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIV 216 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~ 216 (424)
++.+.|+++|+||+.+++++....
T Consensus 234 ~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 234 FTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEec
Confidence 999999999999999999976654
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.99 E-value=19 Score=32.16 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred cceeEEEECCCCCEEEEEeCCCc------EEEEEcCCCCCCCCCcCceeeeeecccCcCeE--------EEEecC-CCEE
Q 014475 219 SVIDAIALDPAEHVFYAGSRDGS------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVT--------CLAYST-GDLL 283 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~-~~~l 283 (424)
+.+..+.+.|++..+++.+.+|. ++.+++.................+....+... +|++.+ +.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEeCCC------CcEEEEeCCCCcEEEEE---------------eccCCCeeEEEEEecCceeeeccCCC
Q 014475 284 ISGSED------GMVRVWDPITHNIVRMF---------------RLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 284 ~t~~~d------g~i~iwd~~~~~~~~~~---------------~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
++.-.+ ..|+-++.. |+.+..+ ...+...-+|+++|+|+.|.++....
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
No 497
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=85.95 E-value=11 Score=37.76 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=78.5
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEec---ceeecC-CCccccCCCCceeEEEEECC----CCceeeee-----
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLAS-SQLREQPSASSGSILYWSWS----KPQVEVKS----- 77 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~-~~~l~~~~~~~g~i~vwd~~----~~~~~~~~----- 77 (424)
.|+.+.+||..++...+.+......+-.|.-+. ..|.+. ..+|+++.. ..+.++-+. +++.....
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~--~e~~ilgvs~d~~T~Els~fnTgl~v 177 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATE--KEVMILGVSKDTKTGELSLFNTGLVV 177 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhh--heeeEEEEEeccccceeEEEecceEE
Confidence 478999999998877666554433333333332 112222 233344433 566665443 33333222
Q ss_pred -cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--------ce-------------e---eeeccccCCeEEEEEcc
Q 014475 78 -LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--------RL-------------L---KKWHAHYRAVTCLVFSE 132 (424)
Q Consensus 78 -~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--------~~-------------~---~~~~~~~~~i~~~~~~~ 132 (424)
..+-.|.|+.-+.+|+.+++|-.| +.+|.+.-. ++ + ..+.-|...|..++...
T Consensus 178 svqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 178 SVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred eccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence 234578888888899999988776 777766311 00 0 01123556677777766
Q ss_pred CCcEEEEeeCCCcEEEEeCC
Q 014475 133 DGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 133 ~~~~l~s~~~dg~i~iwd~~ 152 (424)
.-..|.+-+....|+-|.+.
T Consensus 256 sRg~ly~Lr~kS~Vray~it 275 (1263)
T COG5308 256 SRGLLYVLRKKSAVRAYSIT 275 (1263)
T ss_pred cccceeeecccceeeeEeee
Confidence 55566666666677777663
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=85.91 E-value=12 Score=37.05 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred EeecCCCCCceEEEeCCCCceEEEe-eCCCCCCCceEEecceeec--------CCCccccCCCCceeEEEEECCCCceee
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRY-KSCASPPHGLACVGQRFLA--------SSQLREQPSASSGSILYWSWSKPQVEV 75 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~--------~~~~l~~~~~~~g~i~vwd~~~~~~~~ 75 (424)
+..|+ .+|.|-|+.-..+...... .........+.++. +++ +|...+.+..-+|. ||.+ +.. .
T Consensus 550 ic~gt-q~ssisissss~~s~ke~~~~~~spe~~~v~~l~--~ss~Slgagl~dgt~a~y~rap~gS---wd~e-p~~-~ 621 (925)
T KOG3522|consen 550 ICLGT-QTSSISISSSSLDSIKEVTSEPPSPEHESVKLLL--FSSGSLGAGLIDGTLAVYGRAPSGS---WDGE-PNI-S 621 (925)
T ss_pred ccccC-ccceeEEeeccCCcccceeccCCCCchhhhhhhh--ccccccccCccCCccccccCCCCCC---CCCC-Ccc-c
Confidence 35567 8889999886633322222 22222223343333 222 22222222222233 5544 111 1
Q ss_pred eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec---cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
......+|...++..| ++.|+.+|.|.++...+......+. .|...|+++....++-+++.++.| .+++++.+
T Consensus 622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 1233568888888644 4455678999999988766555543 356689999998777666655554 56666554
Q ss_pred c
Q 014475 153 T 153 (424)
Q Consensus 153 ~ 153 (424)
+
T Consensus 698 t 698 (925)
T KOG3522|consen 698 T 698 (925)
T ss_pred c
Confidence 4
No 499
>PLN02193 nitrile-specifier protein
Probab=85.64 E-value=33 Score=32.56 Aligned_cols=188 Identities=7% Similarity=0.084 Sum_probs=86.4
Q ss_pred CCCccccCCCCc------eeEEEEECCCCceeeeecC---CC--CeeEEEECCCCCEEEEecCC-----CcEEEEEccCc
Q 014475 49 SSQLREQPSASS------GSILYWSWSKPQVEVKSLP---AE--PIKPIAANSHGTYIAGGGQS-----GDIYMWEVASG 112 (424)
Q Consensus 49 ~~~~l~~~~~~~------g~i~vwd~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~ 112 (424)
++..++.+|.+. ..+.+||..+.+-...... .. ........-++.+.+.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 455566666421 2467778776544322111 11 11111122256667777654 35888998776
Q ss_pred ceee--eec--cccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEe---ecCCcCceeE
Q 014475 113 RLLK--KWH--AHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS---FTGHTLRITD 180 (424)
Q Consensus 113 ~~~~--~~~--~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~ 180 (424)
+-.. ... .....-.++.. -+++.++.|+.++ .+..||+.+.. ...+.. ....... ..
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~---------W~~~~~~~~~~~~R~~-~~ 323 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK---------WFHCSTPGDSFSIRGG-AG 323 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE---------EEeCCCCCCCCCCCCC-cE
Confidence 4322 110 01111112222 2566777777543 35667775421 111000 0000111 11
Q ss_pred EEEEEcCceeEEEEEeCC----CcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCC------------
Q 014475 181 IVIGYGGVSATIVSASED----RTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRD------------ 239 (424)
Q Consensus 181 ~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------ 239 (424)
++. .++ +.++.++.+ ..+.+||+.+.+-...-.. +....+++ .-++++++.|+..
T Consensus 324 ~~~-~~g--kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 324 LEV-VQG--KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred EEE-ECC--cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccc
Confidence 222 233 566666544 4588999887654332111 11111222 2256677777642
Q ss_pred --CcEEEEEcCCCC
Q 014475 240 --GSIYIAALNAES 251 (424)
Q Consensus 240 --g~i~i~d~~~~~ 251 (424)
..+.+||+.+..
T Consensus 400 ~~ndv~~~D~~t~~ 413 (470)
T PLN02193 400 LTDGTFALDTETLQ 413 (470)
T ss_pred eeccEEEEEcCcCE
Confidence 247788887653
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.39 E-value=20 Score=35.21 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=45.2
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
++++. -+|.++.++.+..| |.|.++++.............|-..+.|...| |++++.|..+.-|. +.|...
T Consensus 17 ~~aiq--shp~~~s~v~~~~d-~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq 87 (1636)
T KOG3616|consen 17 TTAIQ--SHPGGQSFVLAHQD-GSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ 87 (1636)
T ss_pred eeeee--ecCCCceEEEEecC-CcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcch
Confidence 45555 77999999999998 99999998765442222223344555565444 55555666777775 344333
Done!