Query 014475
Match_columns 424
No_of_seqs 745 out of 3533
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.3E-49 1.8E-53 362.3 35.6 282 34-340 106-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.3E-48 4.4E-53 347.5 35.5 286 30-340 26-320 (321)
3 1nr0_A Actin interacting prote 100.0 1E-47 3.5E-52 371.6 39.6 318 4-340 162-610 (611)
4 1nr0_A Actin interacting prote 100.0 1.2E-47 4.2E-52 371.1 38.9 327 3-343 72-569 (611)
5 4g56_B MGC81050 protein; prote 100.0 4.7E-48 1.6E-52 349.1 32.2 306 4-342 18-344 (357)
6 4gqb_B Methylosome protein 50; 100.0 5.4E-48 1.8E-52 346.1 31.8 299 15-347 16-337 (344)
7 1got_B GT-beta; complex (GTP-b 100.0 4.7E-47 1.6E-51 340.7 37.6 286 24-338 46-340 (340)
8 2ymu_A WD-40 repeat protein; u 100.0 1.4E-46 4.8E-51 362.3 40.1 300 4-338 276-577 (577)
9 2pbi_B Guanine nucleotide-bind 100.0 3E-46 1E-50 337.1 39.6 289 24-338 55-354 (354)
10 2ynn_A Coatomer subunit beta'; 100.0 1.2E-46 4E-51 332.7 36.0 290 25-341 5-302 (304)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-46 3.8E-51 338.9 35.7 310 24-348 6-342 (345)
12 3iz6_a 40S ribosomal protein R 100.0 1.6E-46 5.4E-51 342.5 32.0 303 13-343 46-377 (380)
13 3frx_A Guanine nucleotide-bind 100.0 8.9E-45 3.1E-49 322.8 36.0 284 33-342 14-318 (319)
14 4ery_A WD repeat-containing pr 100.0 2.3E-44 7.9E-49 319.6 38.5 282 34-340 21-311 (312)
15 2hes_X YDR267CP; beta-propelle 100.0 1E-44 3.5E-49 324.0 36.4 302 22-341 3-328 (330)
16 2ymu_A WD-40 repeat protein; u 100.0 2.5E-44 8.5E-49 346.6 40.1 303 4-341 235-539 (577)
17 3ow8_A WD repeat-containing pr 100.0 1.5E-44 5.3E-49 321.2 35.7 268 4-298 50-320 (321)
18 1vyh_C Platelet-activating fac 100.0 5.3E-45 1.8E-49 335.6 33.7 269 3-298 121-410 (410)
19 1r5m_A SIR4-interacting protei 100.0 7.4E-45 2.5E-49 336.6 34.0 310 4-341 60-425 (425)
20 2pm9_A Protein WEB1, protein t 100.0 1.2E-45 4.2E-50 341.2 28.1 313 4-342 27-415 (416)
21 1erj_A Transcriptional repress 100.0 3E-44 1E-48 328.9 36.2 312 13-342 40-390 (393)
22 4aow_A Guanine nucleotide-bind 100.0 1E-43 3.5E-48 319.2 36.2 297 21-343 26-339 (340)
23 2xzm_R RACK1; ribosome, transl 100.0 2E-44 7E-49 324.1 31.4 292 25-342 13-341 (343)
24 1gxr_A ESG1, transducin-like e 100.0 2.4E-43 8.1E-48 316.3 38.2 304 4-339 23-335 (337)
25 1got_B GT-beta; complex (GTP-b 100.0 1E-43 3.5E-48 319.0 35.4 263 4-296 69-340 (340)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.9E-44 3.1E-48 320.0 33.2 289 4-307 30-343 (345)
27 3vl1_A 26S proteasome regulato 100.0 4.4E-44 1.5E-48 331.2 31.9 309 4-341 70-419 (420)
28 2ynn_A Coatomer subunit beta'; 100.0 1.9E-43 6.4E-48 312.2 33.6 251 75-346 8-264 (304)
29 2pbi_B Guanine nucleotide-bind 100.0 4.1E-42 1.4E-46 310.0 37.1 264 4-296 78-354 (354)
30 3zwl_B Eukaryotic translation 100.0 3.5E-42 1.2E-46 312.5 35.3 294 34-343 30-348 (369)
31 4gqb_B Methylosome protein 50; 100.0 1.6E-42 5.5E-47 310.5 30.7 242 36-301 82-333 (344)
32 3iz6_a 40S ribosomal protein R 100.0 2.3E-42 8E-47 314.9 31.0 270 4-301 80-377 (380)
33 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-41 1.8E-45 312.9 39.8 300 3-342 130-443 (445)
34 2hes_X YDR267CP; beta-propelle 100.0 9.1E-42 3.1E-46 304.9 32.7 274 4-299 26-328 (330)
35 3ei3_B DNA damage-binding prot 100.0 5E-42 1.7E-46 313.6 31.6 298 18-341 58-382 (383)
36 1sq9_A Antiviral protein SKI8; 100.0 8.5E-42 2.9E-46 313.5 33.0 296 30-342 10-396 (397)
37 3i2n_A WD repeat-containing pr 100.0 3E-42 1E-46 311.7 29.5 292 34-343 16-355 (357)
38 2pm9_A Protein WEB1, protein t 100.0 2E-42 6.9E-47 319.6 28.4 296 38-347 14-343 (416)
39 3frx_A Guanine nucleotide-bind 100.0 2.3E-41 7.7E-46 300.9 34.1 275 3-300 31-318 (319)
40 4g56_B MGC81050 protein; prote 100.0 2.4E-42 8.4E-47 311.7 27.2 275 4-303 56-347 (357)
41 1pgu_A Actin interacting prote 100.0 5E-41 1.7E-45 325.9 38.1 317 4-341 175-614 (615)
42 2oaj_A Protein SNI1; WD40 repe 100.0 7.5E-42 2.6E-46 342.3 32.5 328 4-344 71-608 (902)
43 3dm0_A Maltose-binding peripla 100.0 1.9E-41 6.5E-46 333.0 34.3 285 34-340 380-692 (694)
44 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-40 4.7E-45 295.2 34.7 285 24-345 9-300 (313)
45 3vl1_A 26S proteasome regulato 100.0 1.5E-41 5.2E-46 314.2 29.6 281 39-344 59-368 (420)
46 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-42 4.4E-47 326.3 21.6 305 4-342 175-518 (524)
47 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-41 5.9E-46 354.4 31.7 326 3-347 714-1164(1249)
48 1r5m_A SIR4-interacting protei 100.0 1.3E-40 4.4E-45 308.1 34.1 301 12-343 24-363 (425)
49 2xzm_R RACK1; ribosome, transl 100.0 2.3E-40 7.8E-45 297.7 34.6 276 3-301 40-342 (343)
50 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-40 5.2E-45 347.3 38.0 332 4-344 629-1037(1249)
51 3k26_A Polycomb protein EED; W 100.0 4.6E-41 1.6E-45 304.9 28.4 289 34-340 16-365 (366)
52 3gre_A Serine/threonine-protei 100.0 4E-41 1.4E-45 313.1 28.2 302 17-338 47-437 (437)
53 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-40 6.1E-45 301.9 30.8 286 35-342 7-362 (372)
54 3v7d_B Cell division control p 100.0 9.3E-40 3.2E-44 306.2 36.4 299 3-338 133-460 (464)
55 1erj_A Transcriptional repress 100.0 8.2E-40 2.8E-44 299.5 35.2 276 4-300 78-390 (393)
56 2pm7_B Protein transport prote 100.0 4E-40 1.4E-44 289.9 31.8 252 75-340 4-284 (297)
57 4ery_A WD repeat-containing pr 100.0 2.3E-39 7.7E-44 287.4 36.9 267 3-298 36-311 (312)
58 4a11_B DNA excision repair pro 100.0 1.4E-40 4.8E-45 306.3 29.2 314 11-347 21-371 (408)
59 4e54_B DNA damage-binding prot 100.0 9.7E-41 3.3E-45 309.9 27.9 284 35-344 118-433 (435)
60 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-40 4.5E-45 333.3 30.7 317 4-343 31-521 (902)
61 4aez_A CDC20, WD repeat-contai 100.0 1.1E-39 3.8E-44 299.7 34.3 277 46-347 99-386 (401)
62 3dwl_C Actin-related protein 2 100.0 3.5E-41 1.2E-45 307.2 22.1 284 37-339 12-377 (377)
63 4gga_A P55CDC, cell division c 100.0 2.6E-39 8.8E-44 299.0 34.4 278 39-345 108-399 (420)
64 1pgu_A Actin interacting prote 100.0 1.9E-39 6.4E-44 314.8 34.8 300 4-340 32-365 (615)
65 1gxr_A ESG1, transducin-like e 100.0 1.1E-39 3.8E-44 292.4 30.3 282 37-344 10-299 (337)
66 4aez_A CDC20, WD repeat-contai 100.0 3.6E-39 1.2E-43 296.2 34.1 276 5-307 106-388 (401)
67 4ggc_A P55CDC, cell division c 100.0 4.7E-39 1.6E-43 286.0 33.3 276 39-343 28-317 (318)
68 4gga_A P55CDC, cell division c 100.0 7.4E-39 2.5E-43 296.0 35.4 293 3-320 117-416 (420)
69 3v7d_B Cell division control p 100.0 2.9E-38 9.8E-43 296.1 39.7 297 25-345 113-425 (464)
70 1yfq_A Cell cycle arrest prote 100.0 2.9E-39 9.9E-44 290.4 30.6 291 32-339 7-322 (342)
71 4h5i_A Guanine nucleotide-exch 100.0 5.7E-40 2E-44 297.0 24.9 282 37-342 15-344 (365)
72 3bg1_A Protein SEC13 homolog; 100.0 8E-40 2.7E-44 290.5 25.1 250 76-340 9-292 (316)
73 3zwl_B Eukaryotic translation 100.0 2.3E-38 7.7E-43 287.4 34.9 275 3-305 45-352 (369)
74 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-38 4.4E-43 319.0 35.8 292 25-343 5-304 (814)
75 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-38 8E-43 294.1 34.8 282 28-344 125-417 (435)
76 3mkq_A Coatomer beta'-subunit; 100.0 1.9E-38 6.6E-43 317.7 36.8 311 3-341 26-386 (814)
77 3k26_A Polycomb protein EED; W 100.0 8E-39 2.7E-43 290.1 30.3 282 5-299 37-366 (366)
78 1sq9_A Antiviral protein SKI8; 100.0 6.5E-39 2.2E-43 294.3 29.4 268 4-301 28-397 (397)
79 4aow_A Guanine nucleotide-bind 100.0 2.8E-38 9.4E-43 283.8 32.7 278 3-301 52-339 (340)
80 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-38 4.7E-43 289.4 29.5 289 3-301 21-363 (372)
81 3dm0_A Maltose-binding peripla 100.0 7.7E-38 2.6E-42 307.4 35.0 267 3-299 396-693 (694)
82 2pm7_B Protein transport prote 100.0 8.2E-38 2.8E-42 275.1 31.2 249 34-298 7-284 (297)
83 3f3f_A Nucleoporin SEH1; struc 100.0 5.3E-38 1.8E-42 282.5 30.4 263 75-346 6-342 (351)
84 3dw8_B Serine/threonine-protei 100.0 4.1E-38 1.4E-42 293.6 30.3 286 35-339 27-444 (447)
85 3mmy_A MRNA export factor; mRN 100.0 1.4E-37 4.7E-42 282.1 31.7 297 17-342 23-347 (368)
86 3ei3_B DNA damage-binding prot 100.0 1.1E-37 3.9E-42 284.6 30.9 269 3-299 87-382 (383)
87 3odt_A Protein DOA1; ubiquitin 100.0 7.4E-37 2.5E-41 271.1 34.7 266 4-307 31-304 (313)
88 4a11_B DNA excision repair pro 100.0 1.6E-37 5.4E-42 285.9 31.3 320 3-340 57-404 (408)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-37 3.9E-42 286.5 29.8 276 46-343 42-344 (402)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-36 3.5E-41 284.0 35.7 283 25-347 110-397 (445)
91 4ggc_A P55CDC, cell division c 100.0 2.3E-36 7.8E-41 268.6 35.3 275 3-301 37-317 (318)
92 3i2n_A WD repeat-containing pr 100.0 1.3E-37 4.6E-42 281.2 27.7 280 3-302 32-356 (357)
93 4e54_B DNA damage-binding prot 100.0 6.8E-38 2.3E-42 290.8 26.0 275 3-303 133-434 (435)
94 3dwl_C Actin-related protein 2 100.0 2.8E-38 9.5E-43 288.1 22.1 253 76-339 7-280 (377)
95 3jrp_A Fusion protein of prote 100.0 3.7E-37 1.3E-41 280.5 28.8 255 75-343 6-289 (379)
96 3bg1_A Protein SEC13 homolog; 100.0 7E-38 2.4E-42 278.0 23.1 249 34-298 11-292 (316)
97 3gre_A Serine/threonine-protei 100.0 4.9E-37 1.7E-41 285.5 28.1 286 46-349 35-367 (437)
98 1p22_A F-BOX/WD-repeat protein 100.0 3E-36 1E-40 279.8 32.5 286 3-320 144-434 (435)
99 4h5i_A Guanine nucleotide-exch 100.0 6.3E-36 2.2E-40 270.5 33.7 270 3-299 27-343 (365)
100 3jrp_A Fusion protein of prote 100.0 5.1E-36 1.8E-40 273.0 33.1 258 24-302 2-290 (379)
101 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-37 4E-42 292.7 22.4 269 37-342 134-429 (524)
102 1l0q_A Surface layer protein; 100.0 9.2E-35 3.1E-39 266.1 40.8 310 2-343 2-344 (391)
103 2xyi_A Probable histone-bindin 100.0 2.2E-36 7.6E-41 280.1 26.4 254 76-342 124-411 (430)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.9E-35 2.4E-39 271.8 35.0 279 38-340 6-390 (450)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-36 2.2E-40 274.9 27.0 275 3-302 48-345 (402)
106 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-35 1.3E-39 264.0 30.6 269 34-307 9-345 (351)
107 3dw8_B Serine/threonine-protei 100.0 1.2E-35 3.9E-40 277.0 25.8 258 78-344 26-376 (447)
108 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-36 1.9E-40 274.7 22.4 261 37-340 16-296 (588)
109 2w18_A PALB2, fancn, partner a 100.0 4.6E-35 1.6E-39 252.5 26.1 270 2-339 54-355 (356)
110 3bws_A Protein LP49; two-domai 100.0 5.1E-34 1.7E-38 264.8 34.8 302 7-341 94-432 (433)
111 3jro_A Fusion protein of prote 100.0 1.7E-35 6E-40 292.3 26.3 257 75-345 4-289 (753)
112 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-35 3.6E-40 272.8 22.6 278 4-343 29-323 (588)
113 1yfq_A Cell cycle arrest prote 100.0 9.3E-35 3.2E-39 261.0 28.2 260 4-296 25-321 (342)
114 3vu4_A KMHSV2; beta-propeller 100.0 4.1E-34 1.4E-38 257.8 29.8 290 17-343 3-338 (355)
115 3lrv_A PRE-mRNA-splicing facto 100.0 3.4E-34 1.1E-38 257.5 26.3 266 46-340 44-332 (343)
116 3jro_A Fusion protein of prote 100.0 1.5E-34 5E-39 285.7 26.0 250 34-299 7-285 (753)
117 3mmy_A MRNA export factor; mRN 100.0 1.1E-33 3.9E-38 256.3 29.4 268 3-298 55-345 (368)
118 4gq1_A NUP37; propeller, trans 100.0 8.4E-35 2.9E-39 266.1 22.0 280 46-339 26-387 (393)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.6E-33 3.3E-37 257.4 33.5 237 38-298 104-390 (450)
120 2xyi_A Probable histone-bindin 100.0 4.5E-33 1.5E-37 257.9 30.0 254 35-300 127-411 (430)
121 1l0q_A Surface layer protein; 100.0 4.2E-32 1.4E-36 248.5 33.9 266 52-344 4-278 (391)
122 3vu4_A KMHSV2; beta-propeller 100.0 4.4E-31 1.5E-35 238.0 32.6 278 4-300 33-337 (355)
123 3lrv_A PRE-mRNA-splicing facto 100.0 7.8E-33 2.7E-37 248.6 20.0 238 87-342 43-293 (343)
124 1nir_A Nitrite reductase; hemo 100.0 8E-31 2.7E-35 248.2 33.4 320 3-345 150-518 (543)
125 3bws_A Protein LP49; two-domai 100.0 4E-30 1.4E-34 238.5 33.8 269 3-299 135-432 (433)
126 4gq1_A NUP37; propeller, trans 100.0 1.6E-31 5.4E-36 244.4 21.4 239 46-297 97-387 (393)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.2E-30 1.1E-34 237.1 29.3 282 11-324 87-411 (415)
128 1nir_A Nitrite reductase; hemo 100.0 7E-28 2.4E-32 228.1 30.9 276 46-345 145-462 (543)
129 2w18_A PALB2, fancn, partner a 100.0 1.9E-27 6.7E-32 205.1 27.2 234 14-297 78-355 (356)
130 2ecf_A Dipeptidyl peptidase IV 100.0 8.8E-28 3E-32 238.0 28.0 311 4-342 50-460 (741)
131 2z3z_A Dipeptidyl aminopeptida 100.0 5.9E-28 2E-32 237.9 24.7 309 5-343 38-437 (706)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.1E-28 2.1E-32 221.9 22.5 277 38-343 64-389 (415)
133 2ojh_A Uncharacterized protein 100.0 8.4E-27 2.9E-31 204.4 24.1 251 60-332 21-293 (297)
134 3u4y_A Uncharacterized protein 100.0 1.4E-25 4.8E-30 200.2 30.4 281 3-308 11-312 (331)
135 1ri6_A Putative isomerase YBHE 100.0 1.8E-25 6.2E-30 200.4 30.7 297 3-324 6-336 (343)
136 1pby_B Quinohemoprotein amine 100.0 1.3E-25 4.5E-30 200.8 29.6 275 3-311 2-322 (337)
137 1ri6_A Putative isomerase YBHE 100.0 7.4E-26 2.5E-30 202.9 27.8 275 51-340 5-307 (343)
138 1k32_A Tricorn protease; prote 100.0 1.3E-25 4.4E-30 230.0 32.3 317 4-343 26-463 (1045)
139 3vgz_A Uncharacterized protein 99.9 6E-25 2.1E-29 197.9 32.3 268 38-332 42-335 (353)
140 1xfd_A DIP, dipeptidyl aminope 99.9 2.7E-26 9.1E-31 226.8 24.8 299 5-328 31-427 (723)
141 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-26 1.8E-30 225.3 25.0 277 36-341 36-413 (741)
142 3u4y_A Uncharacterized protein 99.9 6.7E-25 2.3E-29 195.8 29.8 277 46-343 5-306 (331)
143 1pby_B Quinohemoprotein amine 99.9 1.3E-25 4.5E-30 200.7 23.7 265 52-344 3-313 (337)
144 1k32_A Tricorn protease; prote 99.9 4.1E-25 1.4E-29 226.2 29.0 312 5-343 259-639 (1045)
145 2ojh_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 193.5 23.3 254 7-290 17-293 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.9 3.6E-25 1.2E-29 218.7 22.3 276 39-341 19-393 (723)
147 3hfq_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 186.0 28.4 264 61-340 16-316 (347)
148 3hfq_A Uncharacterized protein 99.9 5.4E-23 1.9E-27 184.8 28.3 282 1-304 1-324 (347)
149 1jmx_B Amine dehydrogenase; ox 99.9 2.2E-23 7.6E-28 187.3 24.9 273 46-344 7-328 (349)
150 2z3z_A Dipeptidyl aminopeptida 99.9 5.2E-23 1.8E-27 202.6 28.7 276 12-318 100-452 (706)
151 3vgz_A Uncharacterized protein 99.9 2.7E-22 9.1E-27 180.5 30.8 249 12-290 68-335 (353)
152 1z68_A Fibroblast activation p 99.9 1.3E-23 4.5E-28 207.3 22.8 319 6-343 30-445 (719)
153 3o4h_A Acylamino-acid-releasin 99.9 2.7E-23 9.1E-28 200.0 22.7 268 37-341 22-315 (582)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-22 3.7E-27 187.5 22.9 262 61-340 23-332 (434)
155 1jmx_B Amine dehydrogenase; ox 99.9 1.9E-21 6.6E-26 174.6 30.7 267 3-309 12-335 (349)
156 3scy_A Hypothetical bacterial 99.9 5.9E-21 2E-25 172.4 32.2 291 11-319 25-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.9 9.4E-23 3.2E-27 196.2 19.6 236 79-339 20-274 (582)
158 3pe7_A Oligogalacturonate lyas 99.9 6.3E-22 2.1E-26 180.6 24.0 301 16-340 13-381 (388)
159 3scy_A Hypothetical bacterial 99.9 1.8E-20 6.3E-25 169.2 31.5 266 61-340 27-336 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-21 5.1E-26 179.9 24.1 196 38-251 38-280 (434)
161 1z68_A Fibroblast activation p 99.9 2.3E-22 7.9E-27 198.4 18.9 275 46-341 23-391 (719)
162 2oiz_A Aromatic amine dehydrog 99.9 2.9E-20 9.9E-25 167.3 27.8 285 11-323 29-360 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.3E-20 1.1E-24 167.6 26.7 277 2-300 2-342 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.8E-20 6.2E-25 169.4 23.4 270 61-342 14-342 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.9 1.5E-19 5.2E-24 178.5 31.2 312 4-342 30-450 (740)
166 2dg1_A DRP35, lactonase; beta 99.9 7.5E-19 2.6E-23 156.7 29.8 277 38-332 7-301 (333)
167 3c5m_A Oligogalacturonate lyas 99.9 7.4E-20 2.5E-24 167.3 21.6 296 16-340 13-381 (396)
168 3azo_A Aminopeptidase; POP fam 99.8 2.5E-19 8.7E-24 175.0 25.5 313 3-338 36-408 (662)
169 3fvz_A Peptidyl-glycine alpha- 99.8 5.7E-18 2E-22 150.6 30.2 241 80-342 23-323 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 1.6E-17 5.3E-22 144.8 30.9 236 79-342 28-281 (286)
171 2oiz_A Aromatic amine dehydrog 99.8 2.6E-18 8.9E-23 154.5 24.6 258 60-342 30-335 (361)
172 1qks_A Cytochrome CD1 nitrite 99.8 3.2E-17 1.1E-21 154.9 32.5 320 3-344 168-541 (567)
173 3pe7_A Oligogalacturonate lyas 99.8 4.6E-18 1.6E-22 155.0 24.2 236 86-344 41-332 (388)
174 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-18 7.5E-23 170.2 22.5 284 41-340 21-397 (740)
175 3azo_A Aminopeptidase; POP fam 99.8 5E-18 1.7E-22 165.8 24.3 286 36-343 23-371 (662)
176 2gop_A Trilobed protease; beta 99.8 3.3E-17 1.1E-21 146.9 26.0 251 49-340 23-330 (347)
177 2gop_A Trilobed protease; beta 99.8 3.7E-17 1.3E-21 146.6 25.2 251 12-311 42-341 (347)
178 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.4E-21 139.0 27.9 237 35-301 28-282 (286)
179 3dsm_A Uncharacterized protein 99.8 1.7E-16 5.7E-21 140.9 28.0 279 11-319 15-320 (328)
180 2xdw_A Prolyl endopeptidase; a 99.8 4.8E-17 1.6E-21 159.9 27.0 279 47-343 80-416 (710)
181 3fvz_A Peptidyl-glycine alpha- 99.8 1.8E-16 6.1E-21 140.9 26.7 238 36-299 23-322 (329)
182 3e5z_A Putative gluconolactona 99.8 1.7E-16 5.8E-21 138.9 26.1 231 79-332 26-278 (296)
183 2z2n_A Virginiamycin B lyase; 99.8 6.6E-15 2.3E-19 128.8 34.9 274 37-342 15-296 (299)
184 2bkl_A Prolyl endopeptidase; m 99.8 2.5E-17 8.6E-22 161.5 21.3 279 46-343 75-399 (695)
185 2xdw_A Prolyl endopeptidase; a 99.8 5.4E-16 1.8E-20 152.5 29.3 246 38-301 126-416 (710)
186 3dsm_A Uncharacterized protein 99.8 1.3E-15 4.4E-20 135.2 28.2 254 60-340 16-301 (328)
187 3c5m_A Oligogalacturonate lyas 99.8 3.3E-17 1.1E-21 149.6 17.9 236 83-344 38-332 (396)
188 1qks_A Cytochrome CD1 nitrite 99.7 4E-15 1.4E-19 140.6 31.9 271 48-342 165-478 (567)
189 2bkl_A Prolyl endopeptidase; m 99.7 1E-15 3.5E-20 150.0 28.1 239 37-302 121-400 (695)
190 1rwi_B Serine/threonine-protei 99.7 8.4E-16 2.9E-20 132.5 24.4 239 82-343 25-266 (270)
191 3no2_A Uncharacterized protein 99.7 4.4E-15 1.5E-19 127.9 26.7 246 49-316 4-271 (276)
192 3e5z_A Putative gluconolactona 99.7 5.4E-15 1.9E-19 129.3 26.2 232 38-302 29-289 (296)
193 1rwi_B Serine/threonine-protei 99.7 4.1E-15 1.4E-19 128.2 24.8 238 38-301 25-266 (270)
194 2dg1_A DRP35, lactonase; beta 99.7 1.1E-14 3.8E-19 129.6 28.0 247 11-290 25-301 (333)
195 1yr2_A Prolyl oligopeptidase; 99.7 8.8E-16 3E-20 151.6 22.7 279 46-343 114-443 (741)
196 3no2_A Uncharacterized protein 99.7 1.4E-14 4.8E-19 124.8 26.4 210 91-328 4-230 (276)
197 2mad_H Methylamine dehydrogena 99.7 1.6E-13 5.6E-18 123.3 33.4 273 46-345 28-354 (373)
198 3sjl_D Methylamine dehydrogena 99.7 3.1E-14 1E-18 126.4 27.3 280 12-321 58-384 (386)
199 2qc5_A Streptogramin B lactona 99.7 3.8E-13 1.3E-17 117.6 33.7 271 37-339 20-298 (300)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1.1E-13 3.8E-18 121.9 29.3 246 80-341 17-299 (314)
201 2mad_H Methylamine dehydrogena 99.7 1.1E-12 3.8E-17 117.9 35.9 262 14-306 48-357 (373)
202 2z2n_A Virginiamycin B lyase; 99.7 1.2E-12 4.3E-17 114.2 33.9 257 11-301 34-297 (299)
203 3sjl_D Methylamine dehydrogena 99.6 8.4E-14 2.9E-18 123.6 24.0 274 46-345 40-367 (386)
204 1yr2_A Prolyl oligopeptidase; 99.6 8.6E-14 3E-18 137.4 24.7 240 38-301 164-443 (741)
205 3c75_H MADH, methylamine dehyd 99.6 1.1E-13 3.9E-18 125.0 22.8 279 48-345 82-406 (426)
206 3q7m_A Lipoprotein YFGL, BAMB; 99.6 2.8E-12 9.6E-17 116.1 31.6 308 4-338 55-375 (376)
207 3c75_H MADH, methylamine dehyd 99.6 5.2E-13 1.8E-17 120.7 25.5 264 13-306 99-409 (426)
208 3g4e_A Regucalcin; six bladed 99.6 1.6E-12 5.4E-17 113.6 27.9 231 81-330 13-261 (297)
209 3hrp_A Uncharacterized protein 99.6 9.7E-13 3.3E-17 120.0 27.4 235 81-339 131-408 (409)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 9.9E-13 3.4E-17 115.8 26.8 233 38-299 19-299 (314)
211 2qc5_A Streptogramin B lactona 99.6 8E-12 2.7E-16 109.1 29.8 236 80-340 19-259 (300)
212 1yiq_A Quinohemoprotein alcoho 99.6 6.9E-12 2.3E-16 122.0 31.3 298 4-325 72-532 (689)
213 3hrp_A Uncharacterized protein 99.6 9E-12 3.1E-16 113.6 29.8 236 37-297 131-408 (409)
214 3dr2_A Exported gluconolactona 99.6 3.4E-12 1.1E-16 112.0 25.8 235 77-335 41-301 (305)
215 1kb0_A Quinohemoprotein alcoho 99.6 3.5E-12 1.2E-16 123.7 28.1 297 4-326 79-535 (677)
216 2ghs_A AGR_C_1268P; regucalcin 99.5 1.6E-11 5.5E-16 108.6 29.9 227 82-330 50-291 (326)
217 1xip_A Nucleoporin NUP159; bet 99.5 4E-13 1.4E-17 119.7 19.2 174 80-285 37-230 (388)
218 3hxj_A Pyrrolo-quinoline quino 99.5 1.5E-12 5.1E-17 115.6 21.5 292 4-342 32-325 (330)
219 1xip_A Nucleoporin NUP159; bet 99.5 4.4E-13 1.5E-17 119.5 17.7 179 124-327 39-230 (388)
220 3g4e_A Regucalcin; six bladed 99.5 3E-11 1E-15 105.5 26.8 218 46-288 20-262 (297)
221 3iuj_A Prolyl endopeptidase; h 99.5 3.2E-12 1.1E-16 125.1 20.6 242 80-343 128-407 (693)
222 1mda_H Methylamine dehydrogena 99.5 7.1E-12 2.4E-16 111.5 20.4 267 14-319 47-365 (368)
223 3iuj_A Prolyl endopeptidase; h 99.5 2E-11 6.8E-16 119.5 25.4 239 37-302 129-408 (693)
224 2qe8_A Uncharacterized protein 99.5 4.7E-11 1.6E-15 106.4 25.3 245 81-339 17-319 (343)
225 1mda_H Methylamine dehydrogena 99.4 3.3E-12 1.1E-16 113.6 16.1 250 62-345 47-350 (368)
226 1fwx_A Nitrous oxide reductase 99.4 6.3E-11 2.2E-15 109.6 23.8 305 3-344 16-434 (595)
227 3dr2_A Exported gluconolactona 99.4 8.7E-11 3E-15 102.9 23.8 221 40-292 48-300 (305)
228 2ghs_A AGR_C_1268P; regucalcin 99.4 2.3E-10 7.9E-15 101.2 25.4 215 46-289 56-293 (326)
229 1kb0_A Quinohemoprotein alcoho 99.4 2.2E-10 7.5E-15 111.2 26.3 243 4-251 130-509 (677)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.3E-09 4.6E-14 98.4 29.3 268 49-344 52-340 (376)
231 2hz6_A Endoplasmic reticulum t 99.3 1.9E-14 6.3E-19 129.7 -6.2 256 49-340 8-278 (369)
232 1yiq_A Quinohemoprotein alcoho 99.3 7.6E-10 2.6E-14 107.6 25.4 243 4-251 123-507 (689)
233 1kv9_A Type II quinohemoprotei 99.3 1.1E-08 3.6E-13 99.3 33.1 300 5-327 69-518 (668)
234 2ece_A 462AA long hypothetical 99.3 1.1E-08 3.6E-13 91.6 29.8 219 90-329 93-399 (462)
235 2hz6_A Endoplasmic reticulum t 99.3 9.1E-13 3.1E-17 118.6 3.5 202 91-323 8-216 (369)
236 1npe_A Nidogen, entactin; glyc 99.3 1.7E-08 5.6E-13 86.5 29.6 240 61-323 10-263 (267)
237 2ece_A 462AA long hypothetical 99.2 1.4E-08 4.8E-13 90.9 26.7 254 14-287 44-399 (462)
238 2ad6_A Methanol dehydrogenase 99.2 1.8E-08 6.1E-13 95.7 29.3 298 5-326 65-522 (571)
239 3hxj_A Pyrrolo-quinoline quino 99.2 4.5E-10 1.5E-14 99.5 16.9 253 48-340 29-283 (330)
240 2qe8_A Uncharacterized protein 99.2 2.6E-09 8.8E-14 95.2 20.9 247 38-296 18-318 (343)
241 4a2l_A BT_4663, two-component 99.2 3.2E-07 1.1E-11 91.3 36.6 301 11-343 191-528 (795)
242 1fwx_A Nitrous oxide reductase 99.1 1E-08 3.5E-13 95.0 22.7 237 5-250 105-432 (595)
243 1w6s_A Methanol dehydrogenase 99.1 8E-08 2.8E-12 91.2 29.4 298 5-328 65-534 (599)
244 1flg_A Protein (quinoprotein e 99.1 6.4E-08 2.2E-12 92.0 27.9 305 13-337 78-557 (582)
245 2fp8_A Strictosidine synthase; 99.1 8.4E-08 2.9E-12 84.5 26.3 239 81-341 19-313 (322)
246 1npe_A Nidogen, entactin; glyc 99.1 2.2E-07 7.4E-12 79.4 27.1 239 13-279 10-260 (267)
247 1kv9_A Type II quinohemoprotei 99.1 2.2E-08 7.4E-13 97.2 22.1 287 51-345 67-492 (668)
248 4a2l_A BT_4663, two-component 99.1 2.7E-06 9.2E-11 84.7 37.4 298 12-342 234-572 (795)
249 2iwa_A Glutamine cyclotransfer 99.0 1.2E-07 4.2E-12 79.6 22.9 204 113-342 10-238 (266)
250 3nol_A Glutamine cyclotransfer 99.0 2.7E-07 9.1E-12 76.6 22.3 190 114-329 33-243 (262)
251 2iwa_A Glutamine cyclotransfer 99.0 4E-07 1.4E-11 76.5 23.7 193 82-300 22-238 (266)
252 2ad6_A Methanol dehydrogenase 98.9 3.7E-07 1.3E-11 86.7 24.4 242 4-251 117-496 (571)
253 1ijq_A LDL receptor, low-densi 98.9 8.3E-06 2.8E-10 71.4 31.4 229 61-309 10-248 (316)
254 3v64_C Agrin; beta propeller, 98.9 6.2E-06 2.1E-10 73.2 30.4 238 61-319 53-295 (349)
255 3nol_A Glutamine cyclotransfer 98.9 2.6E-07 8.7E-12 76.7 19.5 180 40-239 46-245 (262)
256 3v9f_A Two-component system se 98.9 8.4E-06 2.9E-10 80.9 34.3 302 11-342 181-525 (781)
257 3v9f_A Two-component system se 98.9 6.7E-06 2.3E-10 81.7 33.3 301 14-343 231-570 (781)
258 2fp8_A Strictosidine synthase; 98.9 2.9E-06 9.9E-11 74.6 27.1 227 46-299 26-313 (322)
259 1w6s_A Methanol dehydrogenase 98.9 1E-06 3.5E-11 83.7 25.4 288 52-345 64-507 (599)
260 3nok_A Glutaminyl cyclase; bet 98.9 6.3E-07 2.2E-11 74.3 20.8 189 113-328 44-252 (268)
261 3mbr_X Glutamine cyclotransfer 98.9 3.7E-06 1.3E-10 69.2 25.1 190 114-329 11-222 (243)
262 3v65_B Low-density lipoprotein 98.9 5.1E-06 1.7E-10 74.9 28.4 239 61-320 96-339 (386)
263 3p5b_L Low density lipoprotein 98.9 1.8E-05 6.2E-10 71.6 31.8 241 61-320 92-341 (400)
264 2p4o_A Hypothetical protein; p 98.8 1E-05 3.6E-10 70.4 28.9 234 39-288 34-277 (306)
265 2p4o_A Hypothetical protein; p 98.8 4.1E-06 1.4E-10 73.0 26.0 227 81-331 32-278 (306)
266 1flg_A Protein (quinoprotein e 98.8 2.4E-06 8.3E-11 81.2 26.2 289 49-345 68-520 (582)
267 3nok_A Glutaminyl cyclase; bet 98.8 1.5E-06 5E-11 72.2 20.6 176 40-238 58-254 (268)
268 1k3i_A Galactose oxidase precu 98.8 3.4E-07 1.2E-11 88.9 19.4 253 14-288 220-530 (656)
269 3mbr_X Glutamine cyclotransfer 98.7 7.3E-06 2.5E-10 67.4 22.5 194 24-239 10-224 (243)
270 3sov_A LRP-6, low-density lipo 98.7 3.4E-05 1.2E-09 67.4 27.3 236 61-319 13-258 (318)
271 1ijq_A LDL receptor, low-densi 98.7 0.0001 3.5E-09 64.4 30.1 218 13-250 10-239 (316)
272 3qqz_A Putative uncharacterize 98.6 3E-05 1E-09 64.7 23.9 200 37-247 27-251 (255)
273 1k3i_A Galactose oxidase precu 98.6 2E-06 6.8E-11 83.5 18.9 242 84-343 189-499 (656)
274 3v64_C Agrin; beta propeller, 98.6 0.00021 7.1E-09 63.4 30.5 237 82-343 35-277 (349)
275 3v65_B Low-density lipoprotein 98.6 0.00019 6.6E-09 64.6 30.1 237 83-344 79-321 (386)
276 2xe4_A Oligopeptidase B; hydro 98.6 1.2E-05 4E-10 79.3 23.1 195 38-247 175-398 (751)
277 3tc9_A Hypothetical hydrolase; 98.6 3.3E-05 1.1E-09 70.6 24.4 240 82-339 138-428 (430)
278 3p5b_L Low density lipoprotein 98.5 0.00045 1.5E-08 62.4 31.9 219 13-250 92-321 (400)
279 3qqz_A Putative uncharacterize 98.5 0.00011 3.7E-09 61.4 24.5 203 117-338 21-250 (255)
280 3m0c_C LDL receptor, low-densi 98.5 0.00026 8.7E-09 69.5 30.4 239 61-318 404-651 (791)
281 4hw6_A Hypothetical protein, I 98.5 0.00014 4.7E-09 66.5 26.9 240 82-339 140-431 (433)
282 1n7d_A LDL receptor, low-densi 98.5 1.9E-06 6.5E-11 83.8 14.1 238 61-319 386-634 (699)
283 3amr_A 3-phytase; beta-propell 98.5 0.00015 5.3E-09 62.8 24.3 201 91-308 39-273 (355)
284 3sov_A LRP-6, low-density lipo 98.4 0.00052 1.8E-08 59.8 27.6 220 13-251 13-240 (318)
285 2xbg_A YCF48-like protein; pho 98.4 0.00078 2.7E-08 59.1 29.8 269 37-339 36-320 (327)
286 2xe4_A Oligopeptidase B; hydro 98.4 2.1E-05 7.3E-10 77.4 20.2 194 82-297 175-398 (751)
287 3tc9_A Hypothetical hydrolase; 98.4 0.00017 5.8E-09 65.9 24.5 232 5-248 152-429 (430)
288 4hw6_A Hypothetical protein, I 98.4 0.00013 4.5E-09 66.6 23.4 234 39-298 141-432 (433)
289 4a0p_A LRP6, LRP-6, low-densit 98.3 0.0014 4.7E-08 62.9 30.0 224 61-307 15-245 (628)
290 2xzh_A Clathrin heavy chain 1; 98.3 0.0013 4.5E-08 56.0 32.5 264 61-342 49-333 (365)
291 3s94_A LRP-6, low-density lipo 98.3 0.0034 1.2E-07 60.1 34.6 181 13-209 18-203 (619)
292 3kya_A Putative phosphatase; s 98.2 0.00072 2.5E-08 62.1 24.7 253 82-345 140-479 (496)
293 2xbg_A YCF48-like protein; pho 98.2 0.0024 8.3E-08 55.9 28.9 229 37-297 80-320 (327)
294 3kya_A Putative phosphatase; s 98.2 0.00078 2.7E-08 61.9 23.7 239 5-251 155-477 (496)
295 2vpj_A Kelch-like protein 12; 98.2 0.00081 2.8E-08 58.1 23.0 231 91-342 14-279 (301)
296 3m0c_C LDL receptor, low-densi 98.2 0.0046 1.6E-07 60.7 30.2 219 13-250 404-633 (791)
297 2xzh_A Clathrin heavy chain 1; 98.2 0.0026 8.9E-08 54.2 26.3 214 13-250 49-291 (365)
298 3ei3_A DNA damage-binding prot 98.1 0.013 4.4E-07 60.2 34.9 307 4-340 573-954 (1158)
299 3amr_A 3-phytase; beta-propell 98.1 0.0013 4.4E-08 57.1 21.6 200 5-216 43-272 (355)
300 1n7d_A LDL receptor, low-densi 98.1 4.1E-05 1.4E-09 74.5 13.3 219 13-250 386-615 (699)
301 3ei3_A DNA damage-binding prot 98.0 0.015 5.2E-07 59.7 31.8 300 14-340 493-872 (1158)
302 2xn4_A Kelch-like protein 2; s 98.0 0.0023 7.8E-08 55.3 22.7 227 92-342 16-277 (302)
303 1bpo_A Protein (clathrin); cla 98.0 0.0066 2.2E-07 54.0 27.4 215 13-251 48-291 (494)
304 2ism_A Putative oxidoreductase 98.0 0.0072 2.5E-07 53.5 26.1 239 80-329 30-333 (352)
305 2vpj_A Kelch-like protein 12; 98.0 0.0017 5.9E-08 56.0 20.9 217 61-301 31-280 (301)
306 1bpo_A Protein (clathrin); cla 98.0 0.0086 2.9E-07 53.2 32.4 265 61-343 48-333 (494)
307 3s94_A LRP-6, low-density lipo 98.0 0.015 5E-07 55.7 35.1 281 39-343 173-512 (619)
308 2p9w_A MAL S 1 allergenic prot 97.9 0.00056 1.9E-08 58.8 16.6 156 82-249 14-215 (334)
309 4a0p_A LRP6, LRP-6, low-densit 97.9 0.017 5.9E-07 55.3 39.4 180 12-208 14-197 (628)
310 2p9w_A MAL S 1 allergenic prot 97.9 0.0052 1.8E-07 52.9 21.5 207 119-341 9-265 (334)
311 2xn4_A Kelch-like protein 2; s 97.9 0.0039 1.3E-07 53.8 21.6 217 61-301 30-278 (302)
312 3ii7_A Kelch-like protein 7; p 97.9 0.0057 2E-07 52.9 22.3 227 92-342 12-273 (306)
313 2g8s_A Glucose/sorbosone dehyd 97.8 0.011 3.8E-07 52.2 24.1 239 81-327 18-339 (353)
314 3ii7_A Kelch-like protein 7; p 97.8 0.014 4.7E-07 50.4 24.2 215 61-301 24-274 (306)
315 1zgk_A Kelch-like ECH-associat 97.8 0.0047 1.6E-07 53.5 20.6 219 90-332 23-273 (308)
316 4asc_A Kelch repeat and BTB do 97.7 0.016 5.3E-07 50.3 22.5 225 2-251 5-279 (315)
317 1zgk_A Kelch-like ECH-associat 97.7 0.0055 1.9E-07 53.0 19.5 229 48-301 23-289 (308)
318 3sre_A PON1, serum paraoxonase 97.6 0.031 1.1E-06 49.1 24.8 226 81-325 50-328 (355)
319 4asc_A Kelch repeat and BTB do 97.6 0.028 9.4E-07 48.8 22.6 214 94-331 7-253 (315)
320 2uvk_A YJHT; unknown function, 97.6 0.0076 2.6E-07 53.4 18.8 235 48-306 18-349 (357)
321 1xi4_A Clathrin heavy chain; a 97.5 0.0086 2.9E-07 61.3 20.1 264 61-342 48-332 (1630)
322 3pbp_A Nucleoporin NUP82; beta 97.5 0.0053 1.8E-07 54.5 16.0 151 48-204 30-208 (452)
323 2woz_A Kelch repeat and BTB do 97.5 0.036 1.2E-06 48.1 21.4 216 93-332 17-264 (318)
324 3pbp_A Nucleoporin NUP82; beta 97.4 0.011 3.8E-07 52.5 17.1 138 198-338 40-209 (452)
325 2be1_A Serine/threonine-protei 97.4 0.0082 2.8E-07 52.2 16.1 115 2-120 10-139 (339)
326 3a9g_A Putative uncharacterize 97.4 0.06 2.1E-06 47.5 25.9 241 80-329 28-330 (354)
327 2uvk_A YJHT; unknown function, 97.3 0.054 1.8E-06 47.8 20.9 234 3-251 22-344 (357)
328 2ism_A Putative oxidoreductase 97.3 0.062 2.1E-06 47.4 21.1 218 11-237 49-333 (352)
329 1xi4_A Clathrin heavy chain; a 97.3 0.022 7.5E-07 58.5 19.6 190 46-251 73-291 (1630)
330 3das_A Putative oxidoreductase 97.3 0.085 2.9E-06 46.1 29.8 248 80-329 31-326 (347)
331 3ott_A Two-component system se 97.2 0.2 6.8E-06 49.3 31.7 295 14-340 122-447 (758)
332 2be1_A Serine/threonine-protei 97.2 0.018 6E-07 50.2 15.9 196 93-304 11-236 (339)
333 3sre_A PON1, serum paraoxonase 97.2 0.089 3.1E-06 46.2 20.3 197 124-338 51-295 (355)
334 2woz_A Kelch repeat and BTB do 97.2 0.1 3.6E-06 45.1 22.4 216 62-301 25-289 (318)
335 3a9g_A Putative uncharacterize 96.8 0.23 7.8E-06 43.8 22.0 232 38-287 30-330 (354)
336 3qhy_B Beta-lactamase inhibito 96.7 0.24 8.3E-06 42.0 21.4 225 80-343 23-248 (282)
337 2zwa_A Leucine carboxyl methyl 96.7 0.26 8.9E-06 47.9 20.9 217 13-237 412-673 (695)
338 2zwa_A Leucine carboxyl methyl 96.6 0.2 6.7E-06 48.8 19.7 200 90-302 396-638 (695)
339 3ott_A Two-component system se 96.6 0.65 2.2E-05 45.7 32.9 290 14-343 83-403 (758)
340 3sbq_A Nitrous-oxide reductase 96.3 0.72 2.5E-05 42.6 25.8 296 3-329 71-453 (638)
341 2g8s_A Glucose/sorbosone dehyd 96.0 0.7 2.4E-05 40.6 21.8 101 39-142 20-149 (353)
342 1tl2_A L10, protein (tachylect 95.8 0.15 5E-06 41.0 11.2 144 177-332 42-201 (236)
343 1tl2_A L10, protein (tachylect 95.7 0.041 1.4E-06 44.2 7.9 133 2-147 4-157 (236)
344 1cru_A Protein (soluble quinop 95.7 0.61 2.1E-05 42.6 16.8 109 175-287 26-162 (454)
345 1suu_A DNA gyrase subunit A; t 95.4 1.2 4E-05 38.3 24.6 207 90-299 6-231 (312)
346 3sbq_A Nitrous-oxide reductase 95.1 0.18 6.1E-06 46.5 10.7 123 14-142 299-454 (638)
347 1cru_A Protein (soluble quinop 95.1 2 6.8E-05 39.2 28.6 112 80-196 26-162 (454)
348 3uc1_A DNA gyrase subunit A; D 94.6 2 6.8E-05 37.1 23.3 166 79-250 93-280 (327)
349 3s25_A Hypothetical 7-bladed b 94.4 2.1 7.1E-05 36.6 23.5 234 46-328 21-279 (302)
350 3qhy_B Beta-lactamase inhibito 94.4 2 6.9E-05 36.2 19.4 204 61-300 42-247 (282)
351 2wg3_C Hedgehog-interacting pr 94.0 3.5 0.00012 37.6 22.7 114 81-197 14-158 (463)
352 3uc1_A DNA gyrase subunit A; D 93.8 3 0.0001 36.0 21.8 243 93-340 4-278 (327)
353 1zi0_A DNA gyrase subunit A; b 93.5 3.2 0.00011 35.5 23.9 246 90-340 1-276 (307)
354 3l6v_A GYRA, DNA gyrase subuni 93.3 4 0.00014 35.9 24.5 246 88-338 3-313 (370)
355 1wp5_A Topoisomerase IV; broke 93.0 4 0.00014 35.1 23.5 246 90-340 3-276 (323)
356 3s25_A Hypothetical 7-bladed b 92.8 4.1 0.00014 34.7 23.0 175 46-250 60-256 (302)
357 3b7f_A Glycosyl hydrolase, BNR 92.1 6.1 0.00021 35.0 25.8 225 82-319 116-391 (394)
358 3kci_A Probable E3 ubiquitin-p 91.5 7.1 0.00024 34.6 25.6 213 80-299 104-345 (389)
359 3b7f_A Glycosyl hydrolase, BNR 91.1 7.9 0.00027 34.3 22.6 70 78-149 52-143 (394)
360 1suu_A DNA gyrase subunit A; t 91.0 6.8 0.00023 33.5 25.3 195 47-250 5-232 (312)
361 1zi0_A DNA gyrase subunit A; b 90.5 7.6 0.00026 33.1 25.0 190 51-249 4-226 (307)
362 3no0_A DNA gyrase subunit A; D 89.8 8 0.00027 32.4 21.7 205 123-340 24-245 (276)
363 1wp5_A Topoisomerase IV; broke 89.4 9.6 0.00033 32.8 24.1 193 49-249 4-225 (323)
364 3kci_A Probable E3 ubiquitin-p 89.2 11 0.00039 33.3 28.1 250 82-340 54-344 (389)
365 3l6v_A GYRA, DNA gyrase subuni 89.0 11 0.00039 33.0 25.7 196 46-250 3-266 (370)
366 4gq2_M Nucleoporin NUP120; bet 87.5 26 0.00089 35.4 22.2 37 271-307 237-274 (950)
367 3das_A Putative oxidoreductase 85.9 17 0.00057 31.6 25.5 156 120-286 29-219 (347)
368 4gq2_M Nucleoporin NUP120; bet 85.8 32 0.0011 34.7 18.6 148 197-344 80-269 (950)
369 4hvt_A Ritya.17583.B, post-pro 84.6 31 0.001 33.5 20.2 246 83-340 131-429 (711)
370 2wg3_C Hedgehog-interacting pr 84.5 13 0.00046 33.8 12.2 111 219-332 14-160 (463)
371 3zwu_A Alkaline phosphatase PH 83.3 29 0.00098 32.7 14.0 58 271-328 477-548 (592)
372 3no0_A DNA gyrase subunit A; D 83.2 19 0.00065 30.1 24.7 211 29-250 16-247 (276)
373 4d9s_A UVB-resistance protein 75.2 44 0.0015 29.6 28.5 249 80-340 67-356 (406)
374 4fhn_B Nucleoporin NUP120; pro 75.0 6.7 0.00023 40.6 7.7 36 272-307 240-276 (1139)
375 3f7f_A Nucleoporin NUP120; nuc 70.7 65 0.0022 31.1 12.5 61 190-250 232-306 (729)
376 4a9v_A PHOX; hydrolase, beta-p 70.2 72 0.0024 29.9 14.0 59 270-328 476-548 (592)
377 3mvd_K Regulator of chromosome 70.1 60 0.002 28.9 32.7 246 81-341 75-374 (423)
378 4fhn_B Nucleoporin NUP120; pro 67.2 98 0.0033 32.0 14.2 38 177-216 239-276 (1139)
379 3zwu_A Alkaline phosphatase PH 62.8 23 0.00078 33.4 7.8 59 82-140 477-548 (592)
380 4a9v_A PHOX; hydrolase, beta-p 59.9 40 0.0014 31.5 8.6 61 81-141 476-549 (592)
381 1sqj_A OXG-RCBH, oligoxylogluc 59.5 1.4E+02 0.0047 29.4 19.7 149 122-289 14-190 (789)
382 3f7f_A Nucleoporin NUP120; nuc 56.0 1.5E+02 0.0051 28.7 13.8 37 271-308 223-259 (729)
383 3mvd_K Regulator of chromosome 49.0 1.4E+02 0.0049 26.4 32.6 240 49-299 83-374 (423)
384 4hvt_A Ritya.17583.B, post-pro 47.4 2E+02 0.007 27.8 25.6 232 46-298 137-429 (711)
385 3q6k_A 43.2 kDa salivary prote 44.1 1.7E+02 0.0057 25.8 19.9 170 61-236 123-341 (381)
386 1q47_A Semaphorin 3A; beta pro 43.5 1.5E+02 0.0051 27.2 9.7 68 177-244 405-487 (495)
387 1zvu_A Topoisomerase IV subuni 42.3 2.4E+02 0.0082 27.1 11.3 186 2-203 472-683 (716)
388 3al9_A Plexin-A2; beta-propell 42.1 99 0.0034 28.7 8.4 68 177-244 401-476 (539)
389 3q6k_A 43.2 kDa salivary prote 40.5 1.9E+02 0.0065 25.4 22.0 121 175-299 151-306 (381)
390 1zvt_A Topoisomerase IV subuni 37.0 1.7E+02 0.0059 23.9 18.8 149 94-250 4-164 (256)
391 3ol2_B Plexin-B1; beta-propell 28.7 2.9E+02 0.0098 25.6 9.1 68 177-244 388-461 (528)
392 1vc3_B L-aspartate-alpha-decar 24.6 69 0.0024 21.5 3.1 31 13-43 18-48 (96)
393 1uhe_A Aspartate 1-decarboxyla 23.8 68 0.0023 21.6 2.9 30 13-43 17-46 (97)
394 3oug_A Aspartate 1-decarboxyla 22.2 84 0.0029 21.8 3.2 31 13-43 45-75 (114)
395 4d9s_A UVB-resistance protein 21.8 4E+02 0.014 23.3 31.6 248 80-340 15-304 (406)
396 4gz8_A Semaphorin-3A; multi-do 21.8 5.3E+02 0.018 24.7 9.7 67 178-244 414-495 (667)
397 1q47_A Semaphorin 3A; beta pro 21.1 1.8E+02 0.0062 26.6 6.3 66 271-336 405-487 (495)
398 1sqj_A OXG-RCBH, oligoxylogluc 20.1 6.1E+02 0.021 24.7 26.0 150 80-239 14-190 (789)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-49 Score=362.27 Aligned_cols=282 Identities=19% Similarity=0.346 Sum_probs=260.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
+|...|.+++ |+|+++++++++.| |+|++||+.+++.. ....|.+.|.+++|+|++++|++|+.|++|++||+.++
T Consensus 106 gh~~~V~~~~--~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 106 GHRSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp CCSSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred ccCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 3567899999 99999999999998 99999999987765 34568999999999999999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+++..+.+|...|.+++|+|++++|++|+.|+.|++||+++ ...+..+.+|...|.++.+++++ .++
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~g--~~l 249 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHREWVRMVRPNQDG--TLI 249 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS--SEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEeCCCccEEEEEECCCC--CEE
Confidence 99999999999999999999999999999999999999965 34567788999999999999988 899
Q ss_pred EEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC--------------------CCEEEEEeCCCcEEEEEcCCCC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA--------------------EHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
++++.|+.|++||+++++....+. |...|.+++|+|+ +.++++|+.|+.|++||++++
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~- 328 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG- 328 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-
T ss_pred EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 999999999999999998888776 8889999999996 678999999999999999986
Q ss_pred CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccC
Q 014475 252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (424)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 330 (424)
.++..+.+|...|++++|+| +.+|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.
T Consensus 329 --------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 329 --------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp --------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred --------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 66788889999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCC
Q 014475 331 SNPHTSSRRH 340 (424)
Q Consensus 331 d~~i~iw~~~ 340 (424)
||.|++|+.+
T Consensus 401 D~~i~vW~~r 410 (410)
T 1vyh_C 401 DQTVKVWECR 410 (410)
T ss_dssp TSEEEEEC--
T ss_pred CCcEEEEeCC
Confidence 9999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=347.55 Aligned_cols=286 Identities=19% Similarity=0.252 Sum_probs=259.2
Q ss_pred eCCCCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECCCCCEEEEecCCC
Q 014475 30 KSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANSHGTYIAGGGQSG 102 (424)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg 102 (424)
+...+|...|.+++ |+|+ +.++++++.| ++|++|++..++... ...|...|.+++|+|++.++++++.|+
T Consensus 26 ~~~~~H~~~V~~v~--~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVA--WGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEE--EC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEE--EecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 34456778899999 9875 5689999988 999999998765432 356889999999999999999999999
Q ss_pred cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 103 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
.|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+++ ......+..|...+.+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-----------~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-----------GKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-----------CSEEEEEECSSSCEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-----------CceeEEecCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999965 234556778889999999
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCcee
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (424)
|+|++ ++|++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.|+.|++||++.. ..
T Consensus 172 ~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------~~ 240 (321)
T 3ow8_A 172 YSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------NL 240 (321)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------CE
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------ce
Confidence 99998 899999999999999999999988887 7889999999999999999999999999999876 55
Q ss_pred eeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
...+.+|...|.+++|+| +.+|++++.|+.|++||+++++++.++.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 678889999999999999 9999999999999999999999999999999999999999999999999999999999964
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-47 Score=371.59 Aligned_cols=318 Identities=16% Similarity=0.203 Sum_probs=263.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------ 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------ 77 (424)
+|++++ .|++|++||..+++...++.+| ...|.+++ |+|+++++++++.| ++|++||..+++.....
T Consensus 162 ~l~s~s-~D~~v~lwd~~~~~~~~~l~~H---~~~V~~v~--fspdg~~las~s~D-~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 162 RIISGS-DDNTVAIFEGPPFKFKSTFGEH---TKFVHSVR--YNPDGSLFASTGGD-GTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp EEEEEE-TTSCEEEEETTTBEEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEECBCTTSS
T ss_pred EEEEEe-CCCeEEEEECCCCeEeeeeccc---cCceEEEE--ECCCCCEEEEEECC-CcEEEEECCCCcEeeeecccccc
Confidence 689999 9999999999999888888764 46788999 99999999999998 99999999877654332
Q ss_pred --cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee---------------------------------------
Q 014475 78 --LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--------------------------------------- 116 (424)
Q Consensus 78 --~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------------------------- 116 (424)
.|.+.|.+++|+|++++|++++.|++|++||+++++.+.
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 588999999999999999999999999999998775443
Q ss_pred ----eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc-----------------------------
Q 014475 117 ----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA----------------------------- 163 (424)
Q Consensus 117 ----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------------------- 163 (424)
.+.+|...|.+++|+|++++|++++.|+.|++||+.++.........
T Consensus 315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 394 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence 33578999999999999999999999999999999764321100000
Q ss_pred ---------------------------cc----------------ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 164 ---------------------------SH----------------LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 164 ---------------------------~~----------------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
.. ..+..+ .|...+.+++|+|++ ++|++|+.|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg--~~lasgs~D~~ 471 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK--QFVAVGGQDSK 471 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS--CEEEEEETTSE
T ss_pred cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC--CEEEEeCCCCe
Confidence 00 000111 145567899999998 89999999999
Q ss_pred EEEEecCCCce--eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee--ecccCcCeEEEE
Q 014475 201 CKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLA 276 (424)
Q Consensus 201 v~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~ 276 (424)
|++||+.+++. .....|...|.+++|+|++++|++++.|+.|++|++.+.. +.... ...|...|.+++
T Consensus 472 v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--------~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 472 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--------ELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--------EESCCCCCCCCSSCEEEEE
T ss_pred EEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--------ceeeeeeeeecccceeEEE
Confidence 99999987653 2344588999999999999999999999999999998732 22222 345999999999
Q ss_pred ecC-CCEEEEeCCCCcEEEEeCCCCc-EE-EEEecc-CCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 277 YST-GDLLISGSEDGMVRVWDPITHN-IV-RMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 277 ~~~-~~~l~t~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|+| +++|++|+.|++|++||+.++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++|++|+++
T Consensus 544 fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999 9999999999999999998865 33 567789 89999999999998 9999999999999973
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-47 Score=371.05 Aligned_cols=327 Identities=18% Similarity=0.248 Sum_probs=264.1
Q ss_pred EEEeecCCCCCceEEEeCCCCce--EEEeeCC-----------------------------------------CCCCCce
Q 014475 3 LLIASSSVADTGIGCWDLESGAE--QLRYKSC-----------------------------------------ASPPHGL 39 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~--~~~~~~~-----------------------------------------~~~~~~v 39 (424)
.+||+|+ .||+|+|||+.+++. ..++..| .+|...|
T Consensus 72 ~~lasg~-~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 72 YYCASGD-VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 150 (611)
T ss_dssp SEEEEEE-TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred cEEEEEe-CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCc
Confidence 3799999 999999999875432 2233222 2355567
Q ss_pred EEecceeecCCCc-cccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 40 ACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 40 ~~~~~~~~~~~~~-l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
.+++ |+|+++. +++++.| ++|++||....+.. ....|...|.+++|+|++++|++|+.|++|++||+.+++.+..
T Consensus 151 ~~v~--f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 151 NSVD--FKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEE--ECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEE--ECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 7777 8888874 7777776 99999998776544 3356889999999999999999999999999999999988887
Q ss_pred ec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc----------------------------
Q 014475 118 WH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR---------------------------- 162 (424)
Q Consensus 118 ~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------- 162 (424)
+. +|.+.|.+++|+|++++|++++.|++|++||++++........
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 74 7999999999999999999999999999999987543211100
Q ss_pred ----cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-----------------------
Q 014475 163 ----ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI----------------------- 215 (424)
Q Consensus 163 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------------------- 215 (424)
........+.+|...|++++|+|++ ++|++++.|++|++||+.+++....+
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 0112345667899999999999998 89999999999999998766432211
Q ss_pred ------------------------------------------------------------ecCcceeEEEECCCCCEEEE
Q 014475 216 ------------------------------------------------------------VFPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 216 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~ 235 (424)
.+...+.+++|+|+++++++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence 11234678999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEE--EeccCC
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRM--FRLAKG 311 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~--~~~~~~ 311 (424)
|+.|+.|++||+.... ...... .+|...|++++|+| +++|++++.|++|++||+.+ ++++.. +..|..
T Consensus 466 gs~D~~v~lwd~~~~~-------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~ 537 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGAS-------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537 (611)
T ss_dssp EETTSEEEEEEEETTE-------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred eCCCCeEEEEEccCCc-------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence 9999999999997752 122333 67999999999999 99999999999999999988 655543 345999
Q ss_pred CeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 312 ~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.|.+++|+||+++|++|+.|++|++|++....
T Consensus 538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 99999999999999999999999999998654
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.7e-48 Score=349.15 Aligned_cols=306 Identities=20% Similarity=0.243 Sum_probs=237.0
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-----ceeEEEEECCCCcee----
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVE---- 74 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd~~~~~~~---- 74 (424)
+++.++ .+.....|++....+ ..|...|.+++ |+|||++|++++.+ |+.|++|+..++...
T Consensus 18 ~~~~~~-g~~~~~~w~~p~~~p-------~~H~~~V~~v~--fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~ 87 (357)
T 4g56_B 18 LYFQSN-GSSKGSAWGRPVTAP-------ACMEVQIGAVR--YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC 87 (357)
T ss_dssp ------------------------------CCCSEEEEEE--ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred eEEecC-CCccccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence 344445 567788888764322 24667899999 99999999999873 389999998765432
Q ss_pred -eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee----eeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 75 -VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 75 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
....|...|.+++|+|++.++ +++.||+|+|||+.+++... ...+|...|++++|+|++++|++|+.||.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 234578899999999998755 56789999999998886543 234799999999999999999999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL 226 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~ 226 (424)
|+++ ...+..+.+|...|++++|++++. ..+++++.|+.|++||++++++...+. +...+.+++|
T Consensus 167 d~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 167 DLSQ-----------KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp ETTT-----------TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred ECCC-----------CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 9955 446777889999999999999874 578999999999999999988776654 5677999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCcEE
Q 014475 227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
+|+ +.+|++|+.|+.|++||++++ +.+..+.+|...|++++|+| + ++|++|+.|++|+|||+++++++
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred hhcccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 997 568889999999999999886 55677889999999999999 4 68999999999999999999887
Q ss_pred EEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCCCC
Q 014475 304 RMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 304 ~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
..+ +|.+.|++++|+| ++.+|++++.||.|++|++...
T Consensus 306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 306 RDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 765 6999999999998 7999999999999999998743
No 6
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.4e-48 Score=346.05 Aligned_cols=299 Identities=21% Similarity=0.252 Sum_probs=238.2
Q ss_pred eEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC------------CceeeeecCCCC
Q 014475 15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------------PQVEVKSLPAEP 82 (424)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~------------~~~~~~~~~~~~ 82 (424)
.+.|++....+ ..+...|.+++ |+|||++|++++ + +++++||... ........+...
T Consensus 16 ~r~w~~~~~~~-------~~~~~~v~~~~--fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (344)
T 4gqb_B 16 AREWNLPPNAP-------ACMERQLEAAR--YRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG 84 (344)
T ss_dssp -------CCSC-------SSCCSEEEEEE--ECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSC
T ss_pred ccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeeeeeccCCC
Confidence 45677654332 22446688888 999999988776 3 6777776211 111122335678
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeee----eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
|.+++|+|++ .|++|+.||.|+|||+++++.+.. +.+|.+.|++++|+|++++|++|+.||.|++||+++
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~----- 158 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ----- 158 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Confidence 9999999986 678899999999999999876544 347999999999999999999999999999999955
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECC-CCCEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFY 234 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~ 234 (424)
...+..+.+|...|.+++|++++. ..|++++.|++|++||+++++....+. +...+.+++|+| ++++++
T Consensus 159 ------~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 159 ------QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ------TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred ------CcEEEEEcCcCCceEEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 456778899999999999999874 578999999999999999999887765 455789999999 467889
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (424)
+|+.||.|++||++++ +++..+.+|...|++++|+| + ++|++|+.|++|+|||+++++++ .+.+|.+.
T Consensus 232 sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~ 301 (344)
T 4gqb_B 232 FGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF 301 (344)
T ss_dssp EEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred EeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence 9999999999999986 56778899999999999999 5 68999999999999999988765 56789999
Q ss_pred eeEEEEEecCce-eeeccCCCceeeccCCCCCCCCC
Q 014475 313 VNNILVVRRPLY-LNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 313 v~~l~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
|++++|+|+++. |++++.|+.|++|++.+..++.+
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p 337 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP 337 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence 999999999875 67899999999999987765544
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-47 Score=340.75 Aligned_cols=286 Identities=20% Similarity=0.324 Sum_probs=253.4
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCC
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSG 102 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg 102 (424)
+...++++ |...|.+++ |+|+++++++++.| |+|++||..+++... ...|...|.+++|+|++++|++|+.|+
T Consensus 46 ~~~~~l~g---H~~~v~~~~--~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 46 RTRRTLRG---HLAKIYAMH--WGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred hhheeecC---CCCceEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 34455554 557799999 99999999999998 999999998776553 356888999999999999999999999
Q ss_pred cEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 103 DIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 103 ~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
.|++|++.++ .....+.+|.+.|.++.|++++. +++++.|+.|++||+++ ...+..+.+|...|
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-----------~~~~~~~~~h~~~v 187 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDV 187 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCE
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC-----------CcEEEEEcCCCCce
Confidence 9999999875 34566788999999999998775 89999999999999965 34567788999999
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (424)
.+++|+|++ .++++++.|+.|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||++...
T Consensus 188 ~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------ 259 (340)
T 1got_B 188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ 259 (340)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------
Confidence 999999988 899999999999999999999888887 88899999999999999999999999999998863
Q ss_pred Cceeeeeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCce
Q 014475 258 GMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH 334 (424)
Q Consensus 258 ~~~~~~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i 334 (424)
.+..+. .+...|++++|+| +++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|++.+|++|+.|+.|
T Consensus 260 ---~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 260 ---ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp ---EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred ---EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 333332 3445799999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 014475 335 TSSR 338 (424)
Q Consensus 335 ~iw~ 338 (424)
++|+
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-46 Score=362.28 Aligned_cols=300 Identities=22% Similarity=0.383 Sum_probs=271.0
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
+|++++ .|+.|++||. +++.+..+.+| ...|.+++ |+|+++.+++++.+ |.|++||...........|..+|
T Consensus 276 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~t~~~d-~~i~~w~~~~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 276 TIASAS-DDKTVKLWNR-NGQLLQTLTGH---SSSVWGVA--FSPDGQTIASASDD-KTVKLWNRNGQHLQTLTGHSSSV 347 (577)
T ss_dssp EEEEEE-TTSCEEEEET-TSCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred EEEEEe-CCCEEEEEeC-CCcEEEEEecC---CCCeEEEE--ECCCCCEEEEEeCC-CeEEEEeCCCCeeEEEeCCCCCE
Confidence 578888 9999999996 46777777654 46788888 99999999999987 99999999887777777889999
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
.+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----------- 415 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------- 415 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-----------
Confidence 99999999999999999999999994 678888899999999999999999999999999999999963
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (424)
...+..+.+|...|++++|+|++ .+|++++.|+.|++||.. ++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus 416 -~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 416 -GQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred -CCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 23466778999999999999998 899999999999999974 55555555 88999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
++||... +.+..+.+|...|++++|+| +++|++++.||.|++||. +++++..+.+|.++|++++|+||
T Consensus 492 ~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 492 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 9999643 56778889999999999999 999999999999999995 68999999999999999999999
Q ss_pred CceeeeccCCCceeecc
Q 014475 322 PLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 322 ~~~l~~~~~d~~i~iw~ 338 (424)
+++|++++.|++|++||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999997
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-46 Score=337.06 Aligned_cols=289 Identities=19% Similarity=0.309 Sum_probs=254.9
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSG 102 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg 102 (424)
+...++++ |...|.+++ |+|++++|++++.| |+|++||..+.+.. ....|...|.+++|+|++.++++|+.|+
T Consensus 55 ~~~~~l~g---H~~~V~~~~--~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 55 KTRRTLKG---HGNKVLCMD--WCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred EEEEEecC---CCCeEEEEE--ECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 34556665 456799999 99999999999998 99999998877654 3455788999999999999999999999
Q ss_pred cEEEEEccCc------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475 103 DIYMWEVASG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (424)
Q Consensus 103 ~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (424)
.+++|++... .....+..|...|.++.|+|+++.|++++.|++|++||+++ ...+..+.+|..
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-----------~~~~~~~~~h~~ 197 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-----------GQLLQSFHGHGA 197 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSS
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEEcCCCC
Confidence 9999998643 34556778999999999999999999999999999999955 345677889999
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS 255 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (424)
.|.++.++|+..++.|++++.||.|++||+++++++..+. |...|.+++|+|++.+|++++.|+.|++||++...
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~---- 273 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---- 273 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----
Confidence 9999999986545899999999999999999999988887 88999999999999999999999999999998752
Q ss_pred CcCceeeeeec--ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 256 SYGMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 256 ~~~~~~~~~~~--~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
.+..+. .+...+.+++|+| +.+|++|+.|+.|++||+.+++.+..+.+|.++|++++|+|++++|++|+.|+
T Consensus 274 -----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 274 -----EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp -----EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -----EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 333333 3345789999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ceeecc
Q 014475 333 PHTSSR 338 (424)
Q Consensus 333 ~i~iw~ 338 (424)
.|++|+
T Consensus 349 ~v~vW~ 354 (354)
T 2pbi_B 349 TLRVWA 354 (354)
T ss_dssp EEEEEC
T ss_pred CEEecC
Confidence 999996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-46 Score=332.75 Aligned_cols=290 Identities=18% Similarity=0.267 Sum_probs=253.6
Q ss_pred eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
..+++.+| ...|.+++ |+|+++++++++.| |.|++||+.++.... ...|..+|.+++|+|++++|++|+.|+.
T Consensus 5 ~~~~~~~h---~~~V~~~~--fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 5 IKKTFSNR---SDRVKGID--FHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp CEEEEEEE---CSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred eEEeecCC---CCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence 45566654 46789999 99999999999998 999999999876543 3568889999999999999999999999
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||++++ ......+.+|...|.+++|
T Consensus 79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~----------~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----------WALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT----------TEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC----------cchhhhhcccCCcEEEEEE
Confidence 999999999999999999999999999999999999999999999999542 2345678899999999999
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (424)
+|... ..|++++.|++|++||++++.....+. +...+..++++| ++.+|++++.|+.|++||++++
T Consensus 149 ~p~~~-~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------- 218 (304)
T 2ynn_A 149 NPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (304)
T ss_dssp CTTCT-TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred CCCCC-CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence 98432 799999999999999998887766655 557889999987 7789999999999999999986
Q ss_pred eeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc--eeeeccCCCceee
Q 014475 260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTS 336 (424)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~d~~i~i 336 (424)
.++..+.+|...|.+++|+| +.+|++|+.||.|++||++++++++.+..|...+.+++|+|++. ++++|+.|| +.+
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~ 297 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTV 297 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEE
T ss_pred ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEE
Confidence 67888999999999999999 89999999999999999999999999999999999999999875 466665544 666
Q ss_pred ccCCC
Q 014475 337 SRRHG 341 (424)
Q Consensus 337 w~~~~ 341 (424)
|++..
T Consensus 298 ~~~~~ 302 (304)
T 2ynn_A 298 LSLGN 302 (304)
T ss_dssp EECC-
T ss_pred EEecc
Confidence 66553
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=338.88 Aligned_cols=310 Identities=15% Similarity=0.175 Sum_probs=251.3
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee----eeecCCCCeeEEEECCCCCEEEEec
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGG 99 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~ 99 (424)
+++.++++|.. ..+.+++ |+|+|++|++++.| ++|++||+.++... ....|...|.+++|+|++++|++|+
T Consensus 6 ~~~~~~~~h~~--~~v~~l~--~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 6 VLLGRVPAHPD--SRCWFLA--WNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp EEEEEECCSTT--SCEEEEE--ECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeeeecCCCC--CcEEEEE--ECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence 45556665532 2788899 99999999999998 99999999877532 2246889999999999999999999
Q ss_pred CCCcEEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475 100 QSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (424)
Q Consensus 100 ~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (424)
.|+.+++||+.++ +.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++. .....+..+.+|...
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE--------DEYECVSVLNSHTQD 152 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT--------SCEEEEEEECCCCSC
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC--------CCeEEEEEecCcCCC
Confidence 9999999999876 457788999999999999999999999999999999999652 122345677899999
Q ss_pred eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (424)
|.+++|+|++ .+|++++.|+.|++||.++++.. ..+. |...|.+++|+|++++|++++.|+.|++|+........
T Consensus 153 v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 153 VKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp EEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred eEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence 9999999998 89999999999999999887533 3444 78899999999999999999999999999975432211
Q ss_pred C------CcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEE
Q 014475 255 S------SYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNIL 317 (424)
Q Consensus 255 ~------~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~ 317 (424)
. .....++..+.+ |...|.+++|+| +..|++++.|+.|++|+...+. ......+|.+.|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 310 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence 1 111233444554 889999999999 9999999999999999987542 1223357899999999
Q ss_pred EEecC-ceeeeccCCCceeeccCCCCCCCCCc
Q 014475 318 VVRRP-LYLNLGSFSNPHTSSRRHGSQLPPPL 348 (424)
Q Consensus 318 ~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~ 348 (424)
|+|++ .+|++|+.||.|++|+....+.+.++
T Consensus 311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 311 WNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp ECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 99998 48999999999999999987765544
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-46 Score=342.46 Aligned_cols=303 Identities=19% Similarity=0.282 Sum_probs=258.5
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH 91 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~ 91 (424)
..+..|+.......+++++| ...|.+++ |+|++++|++++.| |+|++||..+++.. ....|...|.+++|+|+
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH---~~~V~~~~--~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGH---SGKVYSLD--WTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCC---SSCEEEEE--ECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTT
T ss_pred ccccccccceeEEeeccccc---ccEEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCC
Confidence 45667888888888888765 46789999 99999999999998 99999999887655 34568889999999999
Q ss_pred CCEEEEecCCCcEEEEEccCcc-------eeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 92 GTYIAGGGQSGDIYMWEVASGR-------LLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 92 ~~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
+++|++|+.|+.+++||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|+.|++||++++.
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-------- 191 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-------- 191 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--------
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--------
Confidence 9999999999999999996532 34567899999999999996 4579999999999999997632
Q ss_pred ccceEEee-----cCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475 164 SHLYLHSF-----TGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 164 ~~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (424)
.+..+ .+|...|.++.+++ ++ +.+++|+.|++|++||++ .++.+..+. |...|.+++|+|++.+|++
T Consensus 192 ---~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 192 ---RISIFGSEFPSGHTADVLSLSINSLNA--NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp ---EEEEECCCSSSSCCSCEEEEEECSSSC--CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred ---EEEEeecccCCCCccCeEEEEeecCCC--CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 22222 57899999999987 44 899999999999999998 446666665 8899999999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-------cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-------HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF- 306 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~- 306 (424)
|+.||.|++||++++. .+..+.. +...|++++|+| +++|++|+.||.|++||+.+++.+..+
T Consensus 267 ~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp ECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence 9999999999999863 3333332 233589999999 999999999999999999999988887
Q ss_pred ---eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 307 ---RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 307 ---~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.+|.+.|++++|+|++++|++|+.|+.|++|++.+.+
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6799999999999999999999999999999988653
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.9e-45 Score=322.84 Aligned_cols=284 Identities=19% Similarity=0.290 Sum_probs=244.8
Q ss_pred CCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCc------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEE
Q 014475 33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (424)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 105 (424)
.+|...|.+++ |+|++ ++|++++.| ++|++|++.... ......|...|.+++|+|++++|++|+.|++|+
T Consensus 14 ~gH~~~V~~l~--~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 14 EGHNGWVTSLA--TSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp CCCSSCEEEEE--ECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccceEEEEE--ccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 34567789998 99976 788888887 999999986432 123356899999999999999999999999999
Q ss_pred EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475 106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (424)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 185 (424)
+||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||++. ..+..+.+|...|.++.+.|
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------------CEEEEECCCSSCEEEEEECC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------CeEEEEeccCCcEEEEEEcc
Confidence 999999999999999999999999999999999999999999999843 24567789999999999988
Q ss_pred cC----ceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCce
Q 014475 186 GG----VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH 260 (424)
Q Consensus 186 ~~----~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 260 (424)
.. ++..+++++.|+.|++||+++.+....+. |...|.+++|+|++++|++++.||.|++||+... +
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---------~ 229 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------K 229 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---------E
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------c
Confidence 54 12589999999999999999988877776 8899999999999999999999999999999986 4
Q ss_pred eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--------cCCCeeEEEEEecCceeeeccCC
Q 014475 261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
.+..+.. ...|.+++|+| +.++++++.+ .+++|++..+..+..+.. |...+.+++|+|+|++|++|+.|
T Consensus 230 ~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 230 AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 5555554 46899999999 8888887754 599999998887777653 45678999999999999999999
Q ss_pred CceeeccCCCC
Q 014475 332 NPHTSSRRHGS 342 (424)
Q Consensus 332 ~~i~iw~~~~~ 342 (424)
|.|++|++.+.
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998753
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-44 Score=319.56 Aligned_cols=282 Identities=22% Similarity=0.370 Sum_probs=251.7
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
+|...|.+++ |+|+++++++++.| |.|++|+..+++... ...|...|.+++|+|++++|++|+.||.|++||++++
T Consensus 21 gh~~~v~~~~--~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 21 GHTKAVSSVK--FSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp CCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ccCCcEEEEE--ECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 4557899999 99999999999988 999999998776553 3568899999999999999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
+.+..+.+|...|.++.|+|++++|++++.||.|++||+++ ...+..+..|..+|.+++|++++ .++
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l 164 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAVHFNRDG--SLI 164 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTS--SEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEEEEcCCC--CEE
Confidence 99999999999999999999999999999999999999965 34566788899999999999988 899
Q ss_pred EEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
++++.|+.|++||+++++.+..+. +...+..++|+|+++++++++.|+.|++||++++ +.+..+.+|..
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~ 235 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKN 235 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCC
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCC
Confidence 999999999999999998877764 5567999999999999999999999999999886 55667777765
Q ss_pred CeEE--EEec-C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc--CCCceeeccCC
Q 014475 271 AVTC--LAYS-T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRH 340 (424)
Q Consensus 271 ~i~~--~~~~-~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~d~~i~iw~~~ 340 (424)
.+.+ ..++ + +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 4332 2343 4 88999999999999999999999999999999999999999999999886 69999999864
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-44 Score=324.01 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=239.1
Q ss_pred CCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--ee-e-ec-CCCCeeEEEECCCCCEEE
Q 014475 22 SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EV-K-SL-PAEPIKPIAANSHGTYIA 96 (424)
Q Consensus 22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~-~-~~-~~~~v~~~~~s~~~~~l~ 96 (424)
+.+.+.++++| ...|.+++ |+|+ +|++++.| ++|++||+..+.. .. . .. |..+|.+++|+|++++|+
T Consensus 3 ~~~~~~~~~~h---~~~v~~~~--~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 74 (330)
T 2hes_X 3 SINLIKSLKLY---KEKIWSFD--FSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA 74 (330)
T ss_dssp CCEEEEEEECC---SSCEEEEE--EETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred ccccceeeccC---CCceeeec--cCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence 45566777765 46788888 9887 88888887 9999999987532 21 1 23 889999999999999999
Q ss_pred EecCCCcEEEEEccC-------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475 97 GGGQSGDIYMWEVAS-------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 97 ~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
+|+.|+.|++||++. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++... .....+.
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-------~~~~~~~ 147 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-------EEYECIS 147 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-------CCCEEEE
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-------CCeEEEE
Confidence 999999999999853 34567788999999999999999999999999999999995311 1234566
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--ceeeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEE
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYI 244 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i 244 (424)
.+.+|...|.+++|+|++ .+|++++.|++|++||..++ +++..+. |...|.+++|+|+ +..|++++.|+.|++
T Consensus 148 ~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp EECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred EeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 788999999999999998 89999999999999998776 4566665 8899999999998 678999999999999
Q ss_pred EEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc--EEEE-EeccCC-CeeEEEEE
Q 014475 245 AALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRM-FRLAKG-PVNNILVV 319 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s 319 (424)
||++...... ...+.....+.. |...|.+++|+++.+|++++.||.|++||..+++ .+.. ..+|.. .|.+++|+
T Consensus 226 w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 226 WKYMGDDEDD-QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp EEEEEECTTS-CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred EEecCCCccc-cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 9997643211 111133444444 8999999999997799999999999999998774 3333 356876 89999999
Q ss_pred e--cCceeeeccCCCceeeccCCC
Q 014475 320 R--RPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 320 ~--~~~~l~~~~~d~~i~iw~~~~ 341 (424)
| ++++|++|+.||.|++|++..
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEEecCCCcEEEEEecc
Confidence 9 789999999999999999864
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-44 Score=346.61 Aligned_cols=303 Identities=23% Similarity=0.396 Sum_probs=270.2
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
+|++++ .|+.|++||. +++.+..+.+| ...|.+++ |+|+++.+++++.+ +.|++|+...........|..+|
T Consensus 235 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~~---~~~v~~v~--~~~d~~~l~~~~~d-~~i~~w~~~~~~~~~~~~h~~~v 306 (577)
T 2ymu_A 235 TIASAS-DDKTVKLWNR-NGQLLQTLTGH---SSSVNGVA--FRPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSV 306 (577)
T ss_dssp CEEEEE-TTSCEEEECT-TSCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred EEEEEe-CCCEEEEEeC-CCCEEEEEecC---CCCEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCcEEEEEecCCCCe
Confidence 578899 9999999995 57777777654 46788888 99999999999987 99999998766665667789999
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
.+++|+|+++++++++.||.|++||.. +..+..+.+|...|.+++|+|+++++++++.||.|++||..
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----------- 374 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------- 374 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-----------
Confidence 999999999999999999999999975 45567788899999999999999999999999999999963
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (424)
...+..+.+|...|.+++|+|++ ++|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus 375 -~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 375 -GQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 23456778899999999999998 89999999999999996 456666665 88999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
++||... +.+..+.+|...|++++|+| +++|++++.|+.|++|| .++++++.+.+|..+|++++|+|+
T Consensus 451 ~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 451 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp EEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC
Confidence 9999754 45677889999999999999 99999999999999999 468999999999999999999999
Q ss_pred CceeeeccCCCceeeccCCC
Q 014475 322 PLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 322 ~~~l~~~~~d~~i~iw~~~~ 341 (424)
+++|++++.||.|++||..+
T Consensus 520 g~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp SSCEEEEETTSEEEEECTTS
T ss_pred CCEEEEEECcCEEEEEeCCC
Confidence 99999999999999999653
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-44 Score=321.24 Aligned_cols=268 Identities=20% Similarity=0.353 Sum_probs=241.4
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~ 82 (424)
+||||+ .|++|+|||+.+++..... ...+|...|.+++ |++++..+++++.| ++|++||+.+++.... ..+...
T Consensus 50 ~l~tgs-~D~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~--~~~~~~~l~s~s~D-~~i~lWd~~~~~~~~~~~~~~~~ 124 (321)
T 3ow8_A 50 TVVTGS-LDDLVKVWKWRDERLDLQW-SLEGHQLGVVSVD--ISHTLPIAASSSLD-AHIRLWDLENGKQIKSIDAGPVD 124 (321)
T ss_dssp EEEEEE-TTSCEEEEEEETTEEEEEE-EECCCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCTTC
T ss_pred EEEEEc-CCCCEEEEECCCCCeeeee-eeccCCCCEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCEEEEEeCCCcc
Confidence 699999 9999999999877643322 2234667899999 99999999999998 9999999998876543 456778
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
+.+++|+|++++|++|+.||.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+++
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--------- 195 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--------- 195 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...+..+.+|..+|.+++|+|++ .+|++++.|+.|++||+++++....+. |...|.+++|+|++.+|++++.|+.
T Consensus 196 --~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 196 --GKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp --TEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred --CcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 34567788999999999999998 899999999999999999998888877 8889999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|++||++++ .++..+.+|...|.+++|+| +.+|++++.||.|++||..
T Consensus 272 v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 272 VKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999886 67888889999999999999 9999999999999999963
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-45 Score=335.60 Aligned_cols=269 Identities=22% Similarity=0.361 Sum_probs=243.2
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~ 81 (424)
.+||+|+ .||+|+|||+++++...++++|. ..|.+++ |+|+++++++++.| |+|++||+.+.+... ...|..
T Consensus 121 ~~l~s~s-~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~--~~~~~~~l~sgs~D-~~i~iwd~~~~~~~~~~~~h~~ 193 (410)
T 1vyh_C 121 SVMVSAS-EDATIKVWDYETGDFERTLKGHT---DSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH 193 (410)
T ss_dssp SEEEEEE-SSSCEEEEETTTCCCCEEECCCS---SCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred CEEEEEe-CCCeEEEEECCCCcEEEEEeccC---CcEEEEE--EcCCCCEEEEEeCC-CeEEEEeCCCCceeEEEcCCCC
Confidence 3689999 99999999999999998887654 6788888 99999999999998 999999998876543 356889
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.++.|+|++++|++|+.||.|++||+.+
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-------- 265 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-------- 265 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCc------------------eeEEEEEeCCCcEEEEecCCCceeeeee-cCccee
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID 222 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~ 222 (424)
......+.+|...|.+++|+|++. +.+|++|+.|+.|++||+++++++..+. |...|.
T Consensus 266 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 266 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ---CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 345567889999999999998631 3689999999999999999999888887 888999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
+++|+|++++|++|+.||.|++||+++. +.+..+.+|...|++++|+| +.+|++|+.||.|++|+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999875 55677889999999999999 9999999999999999964
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-45 Score=336.61 Aligned_cols=310 Identities=14% Similarity=0.182 Sum_probs=269.5
Q ss_pred EEeecCCCCCceEEEeC----CCCc------eEEEeeCCC-------CCCCceEEecceeecCCCccccCCCCceeEEEE
Q 014475 4 LIASSSVADTGIGCWDL----ESGA------EQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSASSGSILYW 66 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~----~~~~------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vw 66 (424)
+||+++ .||.|++||+ .+++ ....+.... .|...|.+++ |+|++++|++++.+ |.|++|
T Consensus 60 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d-g~i~i~ 135 (425)
T 1r5m_A 60 ILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA--WSHDGNSIVTGVEN-GELRLW 135 (425)
T ss_dssp EEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE--ECTTSSEEEEEETT-SCEEEE
T ss_pred EEEEec-CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE--EcCCCCEEEEEeCC-CeEEEE
Confidence 789999 9999999999 8888 455444311 1456899999 99999999999998 999999
Q ss_pred ECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC---------------eEEEEEc
Q 014475 67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------------VTCLVFS 131 (424)
Q Consensus 67 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------i~~~~~~ 131 (424)
|...........|..+|.+++|+|++++|++++.||.|++||+.+++.+..+..+... +.++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (425)
T 1r5m_A 136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV 215 (425)
T ss_dssp ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence 9555555555668999999999999999999999999999999999999888877776 9999999
Q ss_pred cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce
Q 014475 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL 211 (424)
Q Consensus 132 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 211 (424)
|++ .+++++.+|.|++||+++ ......+..|...|.+++|+|++ .+|++++.|+.|++||+++++.
T Consensus 216 ~~~-~~~~~~~~g~i~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 216 DDD-KFVIPGPKGAIFVYQITE-----------KTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ETT-EEEEECGGGCEEEEETTC-----------SSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSBSC
T ss_pred CCC-EEEEEcCCCeEEEEEcCC-----------CceeeeeccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCcc
Confidence 875 588899999999999965 23455677899999999999998 7999999999999999999988
Q ss_pred eeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 212 LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 212 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
...+. +...+.+++|+|++ .+++++.|+.|++||+++. ..+..+..|...|.+++|+| +++|++++.|
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 88887 88999999999999 9999999999999999886 66777888999999999999 9999999999
Q ss_pred CcEEEEeCCCCc--------------------EEEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 290 GMVRVWDPITHN--------------------IVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 290 g~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
|.|++||+++++ ++..+..|.. +|++++|+|++++|++++.||.|++|++++
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 999999999988 8999999976 999999999999999999999999999863
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-45 Score=341.16 Aligned_cols=313 Identities=13% Similarity=0.184 Sum_probs=263.2
Q ss_pred EEeec----------CCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC---
Q 014475 4 LIASS----------SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--- 70 (424)
Q Consensus 4 ~lat~----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~--- 70 (424)
+||++ + .||.|+|||+.+++..+.+.. ..+...|.+++ |+|++++|++++.+ |.|++||+..
T Consensus 27 ~l~~g~~~g~~~~~~~-~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~--~s~~~~~l~~~~~d-g~v~vw~~~~~~~ 101 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFS-TDSSLELWSLLAADSEKPIAS-LQVDSKFNDLD--WSHNNKIIAGALDN-GSLELYSTNEANN 101 (416)
T ss_dssp EEEEBCBSSCCCSSCC-CCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEE--ECSSSSCEEEEESS-SCEEEECCSSTTS
T ss_pred EEEEEecCcccccccC-CCCeEEEEEccCCCCCcEEEE-EecCCceEEEE--ECCCCCeEEEEccC-CeEEEeecccccc
Confidence 68888 8 899999999998864322222 23567899999 99999999999987 9999999987
Q ss_pred -C-ceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcc------eee---eeccccCCeEEEEEccC-CcEE
Q 014475 71 -P-QVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR------LLK---KWHAHYRAVTCLVFSED-GSFL 137 (424)
Q Consensus 71 -~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~------~~~---~~~~~~~~i~~~~~~~~-~~~l 137 (424)
. .......|...|.+++|+|+ +++|++++.||.|++||+.+++ ... .+..|...|.+++|+|+ +.+|
T Consensus 102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 2 23334568899999999998 8999999999999999999886 333 33679999999999998 7899
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeecCC------cCceeEEEEEEcCceeEEEEEeCCC---cEEEEecCC
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH------TLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLK 208 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~~~~~d~---~v~iwd~~~ 208 (424)
++++.||.|++||++++ ..+..+..+ ...|.+++|+|++. .++++++.|+ .|++||+++
T Consensus 182 ~~~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAK-----------KEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEESSSSCEEEEETTTT-----------EEEEEECCCCCSSCCCCCEEEEEECSSCT-TEEEEEECCSSSCCCCEEETTS
T ss_pred EEEcCCCCEEEEECCCC-----------CcceEEeccccccccCCceEEEEECCCCC-CEEEEEECCCCCceEEEEeCCC
Confidence 99999999999999652 234444444 78999999999864 6899999998 999999998
Q ss_pred C-ceeeeee--cCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CE
Q 014475 209 G-RLLRNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DL 282 (424)
Q Consensus 209 ~-~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~ 282 (424)
+ ++...+. |...+.+++|+| ++.+|++++.||.|++||+++. +.+..+..|...|.+++|+| + .+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCE
Confidence 6 5666665 788999999999 9999999999999999999886 56778889999999999999 6 89
Q ss_pred EEEeCCCCcEEEEeCCCCcEEEEEe-----------------------------------ccCCCeeEEEEEecCceeee
Q 014475 283 LISGSEDGMVRVWDPITHNIVRMFR-----------------------------------LAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 283 l~t~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~v~~l~~s~~~~~l~~ 327 (424)
|++++.||.|++||+.++....... .|..++.+++|+|+|++|++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 9999999999999998765432221 15678889999999999999
Q ss_pred ccCCCceeeccCCCC
Q 014475 328 GSFSNPHTSSRRHGS 342 (424)
Q Consensus 328 ~~~d~~i~iw~~~~~ 342 (424)
++.|+.|++|++.+.
T Consensus 401 ~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 401 TPDGKGVSITNPKIS 415 (416)
T ss_dssp CTTSSCBCCBCCCCC
T ss_pred eCCCCeEEEEEeccC
Confidence 999999999998864
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3e-44 Score=328.91 Aligned_cols=312 Identities=18% Similarity=0.239 Sum_probs=253.7
Q ss_pred CceEEEeCCCCceEE-EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C-----------
Q 014475 13 TGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P----------- 79 (424)
Q Consensus 13 g~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~----------- 79 (424)
....+|+....+... .+.....|...|.+++ |+|+|+++++++ + +.+++|++.+++...... +
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 40 DYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp SCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------------
T ss_pred ceEEEECCCCCcccCceeEEecCCCCEEEEEE--ECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCcccccccccccc
Confidence 345577765443221 1111113567788988 999999999876 4 899999998877543322 1
Q ss_pred -------CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 80 -------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 -------~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 1249999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeee--------ecCcceeE
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI--------VFPSVIDA 223 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~~i~~ 223 (424)
++. ....+. +...+.+++++| ++ .++++++.|+.|++||+++++.+..+ .|...|.+
T Consensus 196 ~~~-----------~~~~~~-~~~~v~~~~~~~~~~--~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 196 TGQ-----------CSLTLS-IEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp TTE-----------EEEEEE-CSSCEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred CCe-----------eEEEEE-cCCCcEEEEEECCCC--CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 632 223333 567899999998 66 89999999999999999998877765 26788999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC---CcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
++|+|++++|++|+.|+.|++||++....... .....+...+.+|...|.+++|+| +.+|++|+.|+.|++||+++
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999999999987532111 111234566788999999999999 99999999999999999999
Q ss_pred CcEEEEEeccCCCeeEEEEEe------cCceeeeccCCCceeeccCCCC
Q 014475 300 HNIVRMFRLAKGPVNNILVVR------RPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~------~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
++++..+.+|.+.|.+++|++ ++.+|++|+.||.|++|++...
T Consensus 342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999999986 6889999999999999998643
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-43 Score=319.16 Aligned_cols=297 Identities=17% Similarity=0.297 Sum_probs=254.5
Q ss_pred CCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCcee------eeecCCCCeeEEEECCCCC
Q 014475 21 ESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGT 93 (424)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~ 93 (424)
++.++..+|++ |...|.+++ |+|+ +++|++++.| |+|++||+...+.. ....|...|.+++|+|+++
T Consensus 26 ~~~~l~~tL~G---H~~~V~~v~--~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 26 EQMTLRGTLKG---HNGWVTQIA--TTPQFPDMILSASRD-KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp CEEEEEEEECC---CSSCEEEEE--ECTTCTTEEEEEETT-SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS
T ss_pred CceEEEEEECC---ccCCEEEEE--EeCCCCCEEEEEcCC-CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC
Confidence 33445556665 557799999 9998 5788899887 99999999865421 2345889999999999999
Q ss_pred EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 94 YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 94 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
+|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.. .........+
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~----------~~~~~~~~~~ 169 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----------VCKYTVQDES 169 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------CEEEEECSSS
T ss_pred EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC----------CceEEEEecc
Confidence 999999999999999999988888888999999999999999999999999999999854 2233455678
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCC
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
|...+..++|++++....+++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++|+.||.|++||++..
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-- 247 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-- 247 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--
Confidence 9999999999988766789999999999999999999888877 8899999999999999999999999999999986
Q ss_pred CCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe---------ccCCCeeEEEEEecCc
Q 014475 253 STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---------LAKGPVNNILVVRRPL 323 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~ 323 (424)
..+..+. +...|.++.|+|+..+++++.|+.|++||++++..+..+. .|...|++++|+|+++
T Consensus 248 -------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 319 (340)
T 4aow_A 248 -------KHLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ 319 (340)
T ss_dssp -------EEEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred -------ceeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence 4455554 4568999999996677778889999999999888776654 6788999999999999
Q ss_pred eeeeccCCCceeeccCCCCC
Q 014475 324 YLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 324 ~l~~~~~d~~i~iw~~~~~~ 343 (424)
+|++|+.||.|++|++.++.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999998763
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2e-44 Score=324.07 Aligned_cols=292 Identities=12% Similarity=0.157 Sum_probs=237.9
Q ss_pred eEEEeeCCCCCCCceEEeccee-----ec-CCCccccCCCCceeEEEEECCCCce--------eeeecCCCCeeEEEECC
Q 014475 25 EQLRYKSCASPPHGLACVGQRF-----LA-SSQLREQPSASSGSILYWSWSKPQV--------EVKSLPAEPIKPIAANS 90 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~-----~~-~~~~l~~~~~~~g~i~vwd~~~~~~--------~~~~~~~~~v~~~~~s~ 90 (424)
....+++ |...|.+++ | ++ ++++|++++.| ++|++||+...+. .....|...|.+++|+|
T Consensus 13 ~~~~l~g---H~~~V~~~~--~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 13 KRGILEG---HSDWVTSIV--AGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EEEEEEC---CSSCEEEEE--ECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred eeeeecc---chhhhhhee--eEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence 4455665 456788888 7 66 89999999998 9999999875431 23356889999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
++.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... .......
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~ 157 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE---------CKFSSAE 157 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC---------EEEECCT
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC---------ceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999531 1111112
Q ss_pred ecCCcCceeEEEEEEcCc--------eeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 171 FTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~--------~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...|...|.+++|+|++. +.++++++.|+.|++||. ..+....+. |...|.+++|+|++++|++|+.||.
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 236889999999998752 158999999999999995 455555554 8899999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE--EEe-----------
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MFR----------- 307 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~--~~~----------- 307 (424)
|++||+.... .....+ .+...|.+++|+| +.+++ ++.|+.|++||+.+++... .+.
T Consensus 237 v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 237 LLIWDILNLT--------YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEEEECCCCc--------ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999995532 112222 3456799999999 66665 4568889999998876544 443
Q ss_pred ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+|...|.+++|+|++++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 57788999999999999999999999999998643
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-43 Score=316.26 Aligned_cols=304 Identities=18% Similarity=0.255 Sum_probs=262.4
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee--e--e--
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--K--S-- 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~--~--~-- 77 (424)
+++++. .++.+.+|+............ |...|.+++ |+|+++++++++ + |.|++||+.+++... . .
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~ 94 (337)
T 1gxr_A 23 MQPVPF-PPDALIGPGIPRHARQINTLN---HGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCL 94 (337)
T ss_dssp EEECCC-CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECS
T ss_pred EEEeec-CCCcEeccccCCccccceecc---CCCceEEEE--EecCCcEEEEcC-C-CeEEEEECCCCCceeeeeccccc
Confidence 345555 555566665554433333333 557788888 999999999998 5 999999998764321 1 1
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
.|...|.+++|+|++++|++++.||.|++||+++++ ....+..|...|.+++|+|+++++++++.||.|++||+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-- 172 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-- 172 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--
Confidence 578899999999999999999999999999999887 5667788999999999999999999999999999999955
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEE
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (424)
......+..|...+.+++|+|++ +.+++++.|+.|++||+++++.+..+.+...+.+++|+|+++++++
T Consensus 173 ---------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 173 ---------QTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp ---------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ---------CceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence 34566778899999999999988 8999999999999999999999999989999999999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCee
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (424)
++.++.|++||++... ...+..|...|.+++|+| +++|++++.||.|++||+.+++.+... .|..+|.
T Consensus 242 ~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~ 310 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVL 310 (337)
T ss_dssp EETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEE
T ss_pred EcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEE
Confidence 9999999999998863 345678999999999999 999999999999999999999988655 4889999
Q ss_pred EEEEEecCceeeeccCCCceeeccC
Q 014475 315 NILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 315 ~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+++|+|++++|++++.||.|++|++
T Consensus 311 ~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 311 SCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999999986
No 25
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-43 Score=319.04 Aligned_cols=263 Identities=17% Similarity=0.298 Sum_probs=237.3
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-----eeeec
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSL 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-----~~~~~ 78 (424)
+|++++ .||+|+|||+.+++.+..+..|. ..|.+++ |+|+++++++++.| +.|++|++.+.+. .....
T Consensus 69 ~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~--~s~~~~~l~s~~~d-~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 69 LLLSAS-QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EEEEEE-TTTEEEEEETTTCCEEEEEECSS---SCEEEEE--ECTTSSEEEEEETT-CEEEEEETTTCSBSCEEEEEEEC
T ss_pred EEEEEe-CCCcEEEEECCCCCcceEeecCC---ccEEEEE--ECCCCCEEEEEeCC-CeEEEEECccCCCcceeEEEecC
Confidence 689999 99999999999999998887654 5688888 99999999999998 9999999987542 12346
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
|.+.|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.||.|++||+++
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~----- 215 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE----- 215 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-----
Confidence 889999999998876 88889999999999999999999999999999999999999999999999999999955
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCCEEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYA 235 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~ 235 (424)
......+.+|...|++++|+|++ +.|++++.|++|++||+++++.+..+.+. ..+.+++|+|+++++++
T Consensus 216 ------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 287 (340)
T 1got_B 216 ------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287 (340)
T ss_dssp ------CSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ------CeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE
Confidence 34567788999999999999998 89999999999999999998888777644 47999999999999999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
|+.|+.|++||+... ..+..+.+|...|.+++|+| +.+|++|+.||.|++||
T Consensus 288 g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 288 GYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999876 55678889999999999999 99999999999999997
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-44 Score=319.96 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=232.5
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---eeecCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VKSLPA 80 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~---~~~~~~ 80 (424)
+||+|+ .||+|+|||++++..........+|...|.+++ |+|++++|++++.| ++|++|+....... ....|.
T Consensus 30 ~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~s~D-~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 30 LLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNYLASASFD-ATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp CEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEECCC-EEEEEEECCCS
T ss_pred EEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCEEEEEECC-CcEEEEEccCCCeEEEEEccCCC
Confidence 689999 999999999998875543333345778899999 99999999999998 99999998876532 335688
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
.+|.+++|+|++++|++|+.|+.|++||+.++. .+..+.+|...|.+++|+|++++|++++.|+.|++||.++
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~---- 181 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE---- 181 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET----
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC----
Confidence 999999999999999999999999999998763 4567788999999999999999999999999999999854
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---------------ceeeeee--cCcc
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------------RLLRNIV--FPSV 220 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---------------~~~~~~~--~~~~ 220 (424)
........+.+|...|.+++|+|++ ++|++++.|++|++||.... +++..+. |...
T Consensus 182 -----~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 182 -----DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred -----CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 2233456788999999999999998 89999999999999997432 1222232 6778
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCC
Q 014475 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~ 298 (424)
|.+++|+|++..+++++.|+.|++|+.+..................+|...|++++|+| + .+|++|+.||.|++|++.
T Consensus 255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 99999999999999999999999999976542221111112233468999999999999 5 599999999999999999
Q ss_pred CCcEEEEEe
Q 014475 299 THNIVRMFR 307 (424)
Q Consensus 299 ~~~~~~~~~ 307 (424)
+++......
T Consensus 335 ~~~~~~~~~ 343 (345)
T 3fm0_A 335 RPEGLHHHH 343 (345)
T ss_dssp C--------
T ss_pred CCCCccccc
Confidence 887665543
No 27
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-44 Score=331.22 Aligned_cols=309 Identities=14% Similarity=0.123 Sum_probs=259.3
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~ 82 (424)
+|++++ .||.|++||+.+++....+..+ ..+.... |+++++++++++.+ |.|++||+.+++.... ..|...
T Consensus 70 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~--~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~ 141 (420)
T 3vl1_A 70 HLYKAR-LDGHDFLFNTIIRDGSKMLKRA----DYTAVDT--AKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSE 141 (420)
T ss_dssp TEEEEE-ETTEEEEEECCSEETTTTSCSC----CEEEEEE--ECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSC
T ss_pred eEEEEE-cCCcEEEEEecccceeeEEecC----CceEEEE--EecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCc
Confidence 478899 9999999999988776555433 3344445 88999999999987 9999999998876655 478999
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++.
T Consensus 142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------- 214 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT------- 214 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-------
T ss_pred cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred cccceEEeec---CCc---------------------CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--
Q 014475 163 ASHLYLHSFT---GHT---------------------LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-- 216 (424)
Q Consensus 163 ~~~~~~~~~~---~~~---------------------~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-- 216 (424)
.+..+. .|. ..+.+++|+|++ .++++++.||.|++||+++++....+.
T Consensus 215 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 215 ----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG--KYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT--EEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC--CEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 222232 233 445555556666 899999999999999999998877775
Q ss_pred cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcEEE
Q 014475 217 FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRV 294 (424)
Q Consensus 217 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i~i 294 (424)
+...+.+++|+|++. ++++|+.||.|++||+++.. .++..+.. |...|.++.+.++++|++++.||.|++
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence 678899999999998 99999999999999999864 33455555 677899997766889999999999999
Q ss_pred EeCCCC---------cEEEEEeccCCCeeEEEEEecCc---eeeeccCCCceeeccCCC
Q 014475 295 WDPITH---------NIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 295 wd~~~~---------~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~d~~i~iw~~~~ 341 (424)
||+... .....+..|.+.|.+++|+|+++ .|++++.+|.+.+|++..
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 998873 22334567889999999999999 788888899999999863
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-43 Score=312.20 Aligned_cols=251 Identities=17% Similarity=0.227 Sum_probs=224.8
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcc
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
....|.+.|.+++|+|++++|++|+.||.|++||++++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+++
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~- 86 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT- 86 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-
Confidence 3456889999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeeee-cCcceeEEEECC-CCC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDP-AEH 231 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-~~~~i~~~~~~~-~~~ 231 (424)
...+..+.+|...|.+++|+|++ .+|++++.|++|++||++++.. ...+. |...|.+++|+| ++.
T Consensus 87 ----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 87 ----------GEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp ----------CCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred ----------CcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 34567788999999999999998 8999999999999999988744 34444 888999999999 678
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
.|++|+.|+.|++||++... .......+|...+..+.|+| +.+|++|+.|+.|++||+++++++.++.+
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp EEEEEETTSEEEEEETTCSS--------CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCC--------ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence 99999999999999998764 22233345778899999987 57999999999999999999999999999
Q ss_pred cCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCC
Q 014475 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
|...|.+++|+|++++|++|+.||.|++||..+.++..
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 99999999999999999999999999999998776543
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.1e-42 Score=310.02 Aligned_cols=264 Identities=20% Similarity=0.302 Sum_probs=235.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------eeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVK 76 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~~~~ 76 (424)
+||||+ .||+|+|||..+++....+..+. ..|.+++ |+|++..+++++.| +.+++|++.... ....
T Consensus 78 ~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~--~sp~g~~lasg~~d-~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 78 RIVSSS-QDGKVIVWDSFTTNKEHAVTMPC---TWVMACA--YAPSGCAIACGGLD-NKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEEECSS---SCCCEEE--ECTTSSEEEEESTT-SEEEEEECCCCTTCCSGGGCEEE
T ss_pred EEEEEe-CCCeEEEEECCCCCcceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CCEEEEEEeccccccccccceee
Confidence 689999 99999999999999888887654 4577777 99999999999998 999999986432 2233
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV 154 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~ 154 (424)
..|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.++.|+| ++++|++|+.||.|++||+++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~- 229 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS- 229 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-
Confidence 46899999999999999999999999999999999999999999999999999987 568999999999999999965
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH 231 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~ 231 (424)
...+..+.+|...|++++|+|++ ..|++++.|++|++||+++++.+..+.. ...+.+++|+|++.
T Consensus 230 ----------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 230 ----------GQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp ----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ----------CcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 34567788999999999999998 8999999999999999998887766653 34688999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
++++|+.|+.|++||+.++ ..+..+.+|...|++++|+| +.+|++|+.||.|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999876 45677889999999999999 99999999999999996
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-42 Score=312.53 Aligned_cols=294 Identities=15% Similarity=0.204 Sum_probs=258.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~ 112 (424)
+|...|.+++ |+|+++++++++.+ |.|++||+.+++.... ..|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 30 ~h~~~v~~~~--~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 30 GHERPLTQVK--YNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp CCSSCEEEEE--ECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EeeceEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 3557799999 99999999999987 9999999988876644 458999999999999999999999999999999999
Q ss_pred ceeeeeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccchhcccccccceEEeecCCcC--ceeEEEEEE
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGY 185 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~ 185 (424)
+.+..+. +...|.+++|+|+++++++++.+ |.|++||+...................+..|.. .+.+++|++
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 9988887 88999999999999999999999 999999997754433332233334455566666 999999999
Q ss_pred cCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 186 GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 186 ~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
++ +.+++++.||.|++||+++ ++....+. +...+.+++|+|++.+|++++.|+.|++||+++. ..+.
T Consensus 186 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~ 254 (369)
T 3zwl_B 186 KG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---------QVLK 254 (369)
T ss_dssp GG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEE
T ss_pred CC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---------ceee
Confidence 88 8999999999999999998 67777776 7889999999999999999999999999999886 3344
Q ss_pred eecccCcCeEEEEecC-CCEEEEeCCCC--------------cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 264 SLSDHSKAVTCLAYST-GDLLISGSEDG--------------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~-~~~l~t~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
.+. +...+.+++|+| +.++++++.++ .+++||..+++.+..+.+|.+.|++++|+|++++|+++
T Consensus 255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 444 788999999999 99999999888 89999999999999999999999999999999999999
Q ss_pred cCCCceeeccCCCCC
Q 014475 329 SFSNPHTSSRRHGSQ 343 (424)
Q Consensus 329 ~~d~~i~iw~~~~~~ 343 (424)
+.||.|++|++....
T Consensus 334 ~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSY 348 (369)
T ss_dssp ETTSEEEEEEECHHH
T ss_pred cCCCeEEEEECcccc
Confidence 999999999998654
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=310.52 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=202.0
Q ss_pred CCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-----eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc
Q 014475 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~ 110 (424)
..+|.+++ |+|++ .+++++.| |+|++||+++++... ...|.+.|++++|+|++++|++|+.||+|++||++
T Consensus 82 ~~~v~~~~--~s~d~-~l~~~s~d-g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 82 EAGVADLT--WVGER-GILVASDS-GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp SSCEEEEE--EETTT-EEEEEETT-SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEE--EeCCC-eEEEEECC-CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 35688888 99986 46677776 999999998876432 23689999999999999999999999999999999
Q ss_pred CcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 111 SGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
+++.+..+.+|...|.+++|+|++ .+|++++.||.|++||++++. .........|...+.+++|+|++.
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~- 227 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK---------PASQIGCSAPGYLPTSLAWHPQQS- 227 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS---------CEEECC----CCCEEEEEECSSCT-
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc---------eeeeeecceeeccceeeeecCCCC-
Confidence 999999999999999999999987 478999999999999997632 111122244666789999998653
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (424)
.++++|+.||.|++||+++++++..+. |...|++++|+|++ ++|++|+.|+.|++||++.+. +..+.+
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----------~~~~~~ 297 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----------LFRSQA 297 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----------EEEECC
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----------EEEEcC
Confidence 789999999999999999999998887 88999999999987 578999999999999998752 445789
Q ss_pred cCcCeEEEEecC-C-CEEEEeCCCCcEEEEeCCCCc
Q 014475 268 HSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 268 ~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd~~~~~ 301 (424)
|...|++++|+| + .+|++++.|++|++|++.+..
T Consensus 298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999999999999 5 467899999999999998754
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-42 Score=314.93 Aligned_cols=270 Identities=20% Similarity=0.341 Sum_probs=233.8
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--------eee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEV 75 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--------~~~ 75 (424)
+||||+ .||+|+|||+.+++....++.|.. .|.+++ |+|+++++++++.| +.+++|++.... ...
T Consensus 80 ~l~s~s-~D~~v~iWd~~~~~~~~~~~~h~~---~v~~~~--~s~~g~~las~~~d-~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 80 WIVSAS-QDGRLIVWNALTSQKTHAIKLHCP---WVMECA--FAPNGQSVACGGLD-SACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp CEEEEE-TTSEEEEEETTTTEEEEEEECCCT---TCCCCE--ECTTSSEEEECCSS-SCCEEEECCCCSSCCCSSTTCCB
T ss_pred EEEEEe-CCCeEEEEECCCCccceEEecCCC---CEEEEE--ECCCCCEEEEeeCC-CcEEEEECCCCccccCCccceee
Confidence 689999 999999999999999999887654 566667 99999999999998 999999987532 123
Q ss_pred eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeee-----ccccCCeEEEEEcc-CCcEEEEeeCCCcEEE
Q 014475 76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRI 148 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~i 148 (424)
...|.+.|.++.|+|+ +..|++|+.|++|++||+++++.+..+ .+|...|.++.|++ ++++|++|+.||.|++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 4568889999999996 567999999999999999999888776 67999999999987 8899999999999999
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--------cc
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------SV 220 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~ 220 (424)
||++. ....+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.+..+... ..
T Consensus 233 wd~~~----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 233 WDLRI----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EETTT----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EECCC----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 99964 223456788999999999999998 89999999999999999999888776521 24
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw 295 (424)
+.+++|+|+++++++|+.||.|++||+.... ....+ .+|...|++++|+| +.+|++|+.||.|++|
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 8999999999999999999999999998763 23333 67999999999999 9999999999999999
Q ss_pred eCCCCc
Q 014475 296 DPITHN 301 (424)
Q Consensus 296 d~~~~~ 301 (424)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 988654
No 33
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-41 Score=312.87 Aligned_cols=300 Identities=22% Similarity=0.398 Sum_probs=263.5
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
.+|++|+ .||+|++||+.+++.+..+.+| ...|.+++ |+ ++.+++++.| |.|++||+.+++.... ..|..
T Consensus 130 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~--~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~h~~ 200 (445)
T 2ovr_B 130 NRIVSGS-DDNTLKVWSAVTGKCLRTLVGH---TGGVWSSQ--MR--DNIIISGSTD-RTLKVWNAETGECIHTLYGHTS 200 (445)
T ss_dssp TEEEEEE-TTSCEEEEETTTCCEEEECCCC---SSCEEEEE--EE--TTEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEE-CCCcEEEEECCCCcEEEEEcCC---CCCEEEEE--ec--CCEEEEEeCC-CeEEEEECCcCcEEEEECCCCC
Confidence 3689999 9999999999999999888754 46788887 76 6788888887 9999999998876544 45889
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++.| +++++++++.||.|++||+++
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-------- 268 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-------- 268 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--------
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--------
Confidence 99999995 578999999999999999999999999999999999999 688999999999999999954
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
...+..+.+|...|.++.+ ++ ..+++++.|+.|++||+++++.+..+. +...+.++.+ +++++++++.||
T Consensus 269 ---~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 269 ---ETCLHTLQGHTNRVYSLQF--DG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp ---TEEEEEECCCSSCEEEEEE--CS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred ---CcEeEEecCCCCceEEEEE--CC--CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence 4456778899999999998 55 799999999999999999999888876 6777877776 577999999999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecc---cCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEE-----eccCCC
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSD---HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF-----RLAKGP 312 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-----~~~~~~ 312 (424)
.|++||++++ +.+..+.. |...|++++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.
T Consensus 340 ~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 409 (445)
T 2ovr_B 340 TVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409 (445)
T ss_dssp CEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred eEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCce
Confidence 9999999886 44555554 88999999997 689999999999999999999999988 468889
Q ss_pred eeEEEEEecCceeeeccCCCc----eeeccCCCC
Q 014475 313 VNNILVVRRPLYLNLGSFSNP----HTSSRRHGS 342 (424)
Q Consensus 313 v~~l~~s~~~~~l~~~~~d~~----i~iw~~~~~ 342 (424)
|++++|+|++.+|++|+.||. +.+||....
T Consensus 410 v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 410 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999999999998 999998754
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-42 Score=304.94 Aligned_cols=274 Identities=16% Similarity=0.254 Sum_probs=217.7
Q ss_pred EEeecCCCCCceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------e-
Q 014475 4 LIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------V- 73 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~- 73 (424)
+||+++ .||+|+|||+.++. ....+. ...|...|.+++ |+|++++|++++.| ++|++||..... .
T Consensus 26 ~las~~-~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~--~sp~~~~las~s~D-~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGS-TDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVA--WRPHTSLLAAGSFD-STVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEE-SSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEE--ECTTSSEEEEEETT-SCEEEEEC-------CCCEEE
T ss_pred EEEEEc-CCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEE--ECCCCCEEEEEeCC-CcEEEEEcccCcCccccceeE
Confidence 689999 99999999998763 344442 223667899999 99999999999998 999999985321 1
Q ss_pred eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
.....|..+|.+++|+|++++|++|+.|++|++||++.. +++..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180 (330)
T ss_dssp EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 233468899999999999999999999999999999432 4567788999999999999999999999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC--------ceeeeee--cCc
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------RLLRNIV--FPS 219 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~~~~~~~--~~~ 219 (424)
|..+ ....++..+.+|...|.+++|+|++.+..|++++.|++|++||++.+ .....+. |..
T Consensus 181 ~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 181 KDYD---------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp EEET---------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred ECCC---------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9854 22345678899999999999999854478999999999999999764 2333333 678
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee-eeecccCc-CeEEEEecC---CCEEEEeCCCCcEEE
Q 014475 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSK-AVTCLAYST---GDLLISGSEDGMVRV 294 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~~~~~---~~~l~t~~~dg~i~i 294 (424)
.|.+++|++++ +|++++.||.|++|+...+. +... ....+|.. .|.+++|+| +.+|++|+.||.|++
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTE-------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-------eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 89999999765 79999999999999987642 1222 23457877 899999998 678999999999999
Q ss_pred EeCCC
Q 014475 295 WDPIT 299 (424)
Q Consensus 295 wd~~~ 299 (424)
||+++
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 99864
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5e-42 Score=313.55 Aligned_cols=298 Identities=13% Similarity=0.120 Sum_probs=243.3
Q ss_pred EeCCCCceEEEeeCCCCCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCceeeee---cCCCCeeEEEECC-CC
Q 014475 18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANS-HG 92 (424)
Q Consensus 18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~~~~~---~~~~~v~~~~~s~-~~ 92 (424)
|++.+.+....+.+ |...|.+++ |+|++ +++++++.| |.|++||+.+++..... .|...|.+++|+| ++
T Consensus 58 ~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 58 RSLKSYKLHRTASP---FDRRVTSLE--WHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp HHHTTCEEEEEECC---CSSCEEEEE--ECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred ccccccceEEeccC---CCCCEEEEE--ECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC
Confidence 44455566666654 557799999 99999 889998887 99999999977765443 4889999999999 78
Q ss_pred CEEEEecCCCcEEEEEccCcceeeeecc---ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475 93 TYIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
++|++++.|+.|++||+++ ..+..+.. |...|.+++|+|++++|++++.||.|++||++. ..+.
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------~~~~ 198 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------------HEIF 198 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------------CEEE
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------------CEEE
Confidence 9999999999999999985 44555543 448899999999999999999999999999832 2466
Q ss_pred eecCCcCceeEEEEEEcCcee-EEEEEeCCCcEEEEecCC----CceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEE
Q 014475 170 SFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIY 243 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 243 (424)
.+..|...|.+++|+|++ . ++++++.|+.|++||+++ +..+..+.+...+.+++|+| ++.+|++++.|+.|+
T Consensus 199 ~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EeccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 778899999999999998 5 899999999999999998 66777778999999999999 999999999999999
Q ss_pred EEEcCCCCCCCCCcCceeeeeeccc----------CcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec--cC
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDH----------SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AK 310 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--~~ 310 (424)
+||+++......... .......| ...+..++++| +.+ +++.||.|++||+.+++++..+.+ |.
T Consensus 277 iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 277 VYSSYDWSKPDQIII--HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEETTBTTSCSEEEE--CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEECCCCcccccccc--ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 999988653211000 00001112 23455577777 555 888999999999999999999987 45
Q ss_pred CCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 311 GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 311 ~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+.+..++|+|++++|++++ |+.|++|++++
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7788889999999999997 99999999874
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.5e-42 Score=313.48 Aligned_cols=296 Identities=18% Similarity=0.199 Sum_probs=251.5
Q ss_pred eCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc-------eeeeecCCCCeeEEEECCC----C---CEE
Q 014475 30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVKSLPAEPIKPIAANSH----G---TYI 95 (424)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-------~~~~~~~~~~v~~~~~s~~----~---~~l 95 (424)
+...+|...|.+++ |+| +++++++.| |.|++|++.+.+ ......|..+|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~--~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVS--ACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEE--ECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEE--ecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 33445678899999 988 788898887 999999999877 4445678999999999999 9 999
Q ss_pred EEecCCCcEEEEEccCcce-----eeeeccc-----cCCeEEEEEc----cCCcE-EEEeeCCCcEEEEeCCcccchhcc
Q 014475 96 AGGGQSGDIYMWEVASGRL-----LKKWHAH-----YRAVTCLVFS----EDGSF-LISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 96 ~~~~~dg~v~iwd~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+++.......
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5999999999 99999 999999999999999761110000
Q ss_pred cccccceEEee-------cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------CcceeEEEE
Q 014475 161 QRASHLYLHSF-------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIAL 226 (424)
Q Consensus 161 ~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~i~~~~~ 226 (424)
..........+ ..|...|.+++|+|++ .+++++.|+.|++||+++++.+..+.. ...+.+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 00111111133 5588999999999875 899999999999999999998888875 889999999
Q ss_pred CCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecc-------------cCcCeEEEEecC-CCEEEEeCCC
Q 014475 227 DPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSD-------------HSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 227 ~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
+|++.+|++++.| +.|++||+++. +.+..+.. |...|.+++|+| +++|++++.|
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 9999999999999 99999999886 45666777 999999999999 9999999999
Q ss_pred CcEEEEeCCCCcEEEEEe------cc---------------CCCeeEEEEEecC----------ceeeeccCCCceeecc
Q 014475 290 GMVRVWDPITHNIVRMFR------LA---------------KGPVNNILVVRRP----------LYLNLGSFSNPHTSSR 338 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~~~~~d~~i~iw~ 338 (424)
|.|++||+++++++..+. .| ..+|++++|+|++ ++|++++.||.|++|+
T Consensus 313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999999999 88 9999999999998 7999999999999999
Q ss_pred CCCC
Q 014475 339 RHGS 342 (424)
Q Consensus 339 ~~~~ 342 (424)
+.++
T Consensus 393 ~~~g 396 (397)
T 1sq9_A 393 EAGG 396 (397)
T ss_dssp EEC-
T ss_pred cCCC
Confidence 8765
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=311.70 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=243.4
Q ss_pred CCCCceEEecceeecCCCccccCCCC---ceeEEEEECCCCceee--eecCCCCeeEEEECCC---CCEEEEecCCCcEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH---GTYIAGGGQSGDIY 105 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~---~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~ 105 (424)
+|...|.+++ |+|++..+++++.. ||.|++||+.+++... ...|..+|.+++|+|+ +++|++|+.||.|+
T Consensus 16 ~h~~~v~~~~--~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 16 GFNYTVFDCK--WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp ECSSCEEEEE--ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred CCCCceEEEE--EcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 3667899999 99999766655532 4999999999877643 3468899999999998 69999999999999
Q ss_pred EEEccCcc-eeeeeccccCCeEEEEE------ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc---
Q 014475 106 MWEVASGR-LLKKWHAHYRAVTCLVF------SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--- 175 (424)
Q Consensus 106 iwd~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (424)
+||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||++++. .....+..|.
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD----------DPVANMEPVQGEN 163 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----------SCSEEECCCTTSC
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----------CcceeccccCCCC
Confidence 99999988 88899999999999965 6789999999999999999997632 1233444443
Q ss_pred -CceeEEE----EEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC---CCCEEEEEeCCCcEEEEEc
Q 014475 176 -LRITDIV----IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 176 -~~i~~~~----~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~ 247 (424)
..+.+++ |++++ .++++++.|+.|++||+++++......+...+.+++|+| ++.++++++.||.|++||+
T Consensus 164 ~~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 3788888 56777 899999999999999999999887777999999999999 9999999999999999999
Q ss_pred CCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC-------------------cEEEEE
Q 014475 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------------------NIVRMF 306 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~-------------------~~~~~~ 306 (424)
+....... .....+.+|...|++++|+| +. +|++++.||.|++||++++ +++..+
T Consensus 242 ~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 242 RTQHPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEETTTE----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred cCCCcccc----eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 88642211 11223458999999999999 66 8999999999999998754 467788
Q ss_pred eccCCCeeEEEEEecCceee-eccCCCceeeccCCCCC
Q 014475 307 RLAKGPVNNILVVRRPLYLN-LGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~-~~~~d~~i~iw~~~~~~ 343 (424)
..|.++|++++|+|++++|+ +++.||.|++|++...+
T Consensus 318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 89999999999999999998 89999999999987543
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=319.62 Aligned_cols=296 Identities=15% Similarity=0.217 Sum_probs=251.9
Q ss_pred ceEEecceeecCCC-ccccC----------CCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 38 GLACVGQRFLASSQ-LREQP----------SASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 38 ~v~~~~~~~~~~~~-~l~~~----------~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
.+.+++ |+|+++ +++++ +.+ +.|++||+.+++ ......|...|.+++|+|++++|++|+.||.
T Consensus 14 ~v~~~~--~sp~g~~~l~~g~~~g~~~~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 14 RTATFA--WSHDKIPLLVSGTVSGTVDANFSTD-SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp ESCBCC--BCSSSSCEEEEBCBSSCCCSSCCCC-CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hcceEe--eCCCCCCEEEEEecCcccccccCCC-CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 466777 999987 77777 555 999999998765 3344568889999999999999999999999
Q ss_pred EEEEEccC----cceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 104 IYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 104 v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++....... ...........|...|
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--YTPLTPGQSMSSVDEV 168 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--CCCBCCCCSCCSSCCC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--ccccccccccCCCCCe
Confidence 99999987 3578888999999999999998 899999999999999999764310000 0111123346799999
Q ss_pred eEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-------CcceeEEEECCCC-CEEEEEeCCC---cEEEEEc
Q 014475 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAE-HVFYAGSRDG---SIYIAAL 247 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~ 247 (424)
.+++|++++. ..+++++.|+.|++||+++++.+..+.. ...+.+++|+|++ .++++++.|+ .|++||+
T Consensus 169 ~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 169 ISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 9999999832 7999999999999999999998888873 6789999999987 6899999998 9999999
Q ss_pred CCCCCCCCCcCceeeeeec-ccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecC-c
Q 014475 248 NAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-L 323 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~ 323 (424)
+... .+...+. +|...|.+++|+| +++|++++.||.|++||+++++++..+..|.++|.+++|+|++ .
T Consensus 248 ~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 248 RNAN--------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp TSTT--------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred CCCC--------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 9863 3455666 8999999999998 7899999999999999999999999999999999999999999 8
Q ss_pred eeeeccCCCceeeccCCCCCCCCC
Q 014475 324 YLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 324 ~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
+|++++.|+.|++|++........
T Consensus 320 ~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp EEEECCSSSEEEEEESCCCCCSSC
T ss_pred EEEEEecCCcEEEEEccCCCCCcc
Confidence 999999999999999987765443
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-41 Score=300.89 Aligned_cols=275 Identities=19% Similarity=0.305 Sum_probs=231.0
Q ss_pred EEEeecCCCCCceEEEeCCCC-----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-e
Q 014475 3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-K 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~ 76 (424)
.+|++|+ .|++|++||+... ..+..+++ |...|.+++ |+|+++++++++.| ++|++||+.+++... .
T Consensus 31 ~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~s~dg~~l~s~s~D-~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 31 NLLLSAS-RDKTLISWKLTGDDQKFGVPVRSFKG---HSHIVQDCT--LTADGAYALSASWD-KTLRLWDVATGETYQRF 103 (319)
T ss_dssp TEEEEEE-TTSEEEEEEEEEETTEEEEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred cEEEEec-CCccEEEecCCCCCccccccceEEeC---CcccEEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCeeEEE
Confidence 4789999 9999999998643 34555655 456788888 99999999999998 999999999887654 3
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC------CcEEEEeeCCCcEEEEe
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWS 150 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd 150 (424)
..|..+|.+++|+|++.+|++|+.|+.|++||++ ++.+..+.+|...|.++.|+|+ +..+++++.|+.|++||
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 5689999999999999999999999999999985 5677788899999999999985 44899999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
+++ ......+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+.....+.+++|+|++
T Consensus 183 ~~~-----------~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 183 LNQ-----------FQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp TTT-----------TEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred CCc-----------chhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence 954 34566788999999999999998 89999999999999999999999999888899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC
Q 014475 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~ 300 (424)
.++++++.+ .+++|+++......... .........|...+.+++|+| +++|++|+.||.|++||+.++
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLR-PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEEC-CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccC-ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999988765 59999998752110000 000011234677899999999 999999999999999998764
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-42 Score=311.75 Aligned_cols=275 Identities=16% Similarity=0.200 Sum_probs=218.9
Q ss_pred EEeecCCC------CCceEEEeCCCCceEEEeeC-CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--
Q 014475 4 LIASSSVA------DTGIGCWDLESGAEQLRYKS-CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-- 74 (424)
Q Consensus 4 ~lat~~~~------dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-- 74 (424)
+||+++ . |+.|++|+..++.....+.. ...|...|.+++ |+|++++++ ++.+ |+|++||+.+++..
T Consensus 56 ~las~s-~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~d~~~l~-~s~d-g~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 56 LLLAAS-SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA--WVSEKGILV-ASDS-GAVELWEILEKESLLV 130 (357)
T ss_dssp EEEEEE-CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE--EETTTEEEE-EETT-SCEEEC--------CC
T ss_pred EEEEEc-CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE--EcCCCCEEE-EECC-CEEEEeeccccceeEE
Confidence 688888 7 77899999888765433321 123556799999 999987654 5555 99999999876533
Q ss_pred ---eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEe
Q 014475 75 ---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWS 150 (424)
Q Consensus 75 ---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd 150 (424)
....|...|++++|+|++++|++|+.||.|++||+++++.+..+.+|...|++++|+|++. ++++++.||.|++||
T Consensus 131 ~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 131 NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 2235889999999999999999999999999999999999999999999999999999774 789999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA 229 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~ 229 (424)
++++. .........|...+.+++|+|++. .+|++|+.|+.|++||+++++++..+. +...|.+++|+|+
T Consensus 211 ~~~~~---------~~~~~~~~~~~~~v~~v~~sp~~~-~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 211 TRKPK---------PATRIDFCASDTIPTSVTWHPEKD-DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH 280 (357)
T ss_dssp TTSSS---------CBCBCCCTTCCSCEEEEEECTTST-TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred CCCCc---------eeeeeeeccccccccchhhhhccc-ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence 97632 222233456778899999999754 789999999999999999999888887 7889999999998
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475 230 E-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 230 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
+ ++|++|+.|+.|++||++++ +.+ ...+|...|++++|+| +.+|++++.||+|++||+.+....
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 7 57899999999999999875 333 3447999999999998 789999999999999999765433
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-41 Score=325.92 Aligned_cols=317 Identities=14% Similarity=0.103 Sum_probs=259.9
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC-CCccccCCCCceeEEEEECCCCceeeee-----
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEVKS----- 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~~~~----- 77 (424)
+|++++ .||.|++||+.+++.+..+..|......|.+++ |+|+ ++++++++.+ |.|++||+.+++.....
T Consensus 175 ~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 175 RSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--FSPDSGEFVITVGSD-RKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp EEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE--ECSTTCCEEEEEETT-CCEEEEETTTCCEEEECCBTTB
T ss_pred EEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEE--ECCCCCCEEEEEeCC-CeEEEEECCCCCEeEEeccccc
Confidence 689999 999999999999999999887654333789999 9999 9999999987 99999999988876655
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccc----cCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH----YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.|..+|.+++|+ ++++|++++.||.|++||+++++.+..+..+ ...+.++.|. +++++++++.||.|++||+.+
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 789999999999 9999999999999999999999988888766 4678888886 888999999999999999976
Q ss_pred ccchhccccc----------------------------------------------------------------------
Q 014475 154 VFEECESQRA---------------------------------------------------------------------- 163 (424)
Q Consensus 154 ~~~~~~~~~~---------------------------------------------------------------------- 163 (424)
+.........
T Consensus 329 ~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 408 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQ 408 (615)
T ss_dssp EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence 3321110000
Q ss_pred ---------------------------ccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCcee-ee
Q 014475 164 ---------------------------SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLL-RN 214 (424)
Q Consensus 164 ---------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~-~~ 214 (424)
....+..+ .|...+.+++++ + ..+++++. |+.|++||+.+++.. ..
T Consensus 409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~--~~l~~~~~~d~~i~~~~~~~~~~~~~~ 483 (615)
T 1pgu_A 409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS--Q--NYVAVGLEEGNTIQVFKLSDLEVSFDL 483 (615)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC--S--SEEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc--C--CEEEEeecCCCeEEEEECCCccccccc
Confidence 00000000 123334444444 2 56777777 888888887776553 22
Q ss_pred ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-----------CC
Q 014475 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-----------GD 281 (424)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-----------~~ 281 (424)
+. +...|.+++|+|++++|++++.||.|++||+.++ +.+..+.+ |...|++++|+| ++
T Consensus 484 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 484 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred cCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 22 7789999999999999999999999999999986 55667777 999999999998 67
Q ss_pred EEEEeCCCCcEEEEeCCCC-cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 282 LLISGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+|++++.||.|++||+.++ +++..+.+|..+|++++|+|+++ |++++.||.|++|++..
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999998 78899999999999999999999 99999999999999874
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-42 Score=342.28 Aligned_cols=328 Identities=12% Similarity=0.088 Sum_probs=244.2
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee---------
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--------- 74 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--------- 74 (424)
+||+++ .|++|+|||+++++.+..+. +...|.+++ |+|+++++++++.+ |.|++||+++.+..
T Consensus 71 ~L~S~s-~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~--~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 71 YLVVIN-AKDTVYVLSLYSQKVLTTVF----VPGKITSID--TDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp EEEEEE-TTCEEEEEETTTCSEEEEEE----CSSCEEEEE--CCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHH
T ss_pred EEEEEE-CcCeEEEEECCCCcEEEEEc----CCCCEEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccc
Confidence 689999 99999999999999998885 335789999 99999999999998 99999999987653
Q ss_pred ---eeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccc------------------cCCeEEEEEcc
Q 014475 75 ---VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH------------------YRAVTCLVFSE 132 (424)
Q Consensus 75 ---~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~ 132 (424)
....|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..| ...|.+++|+|
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 11347889999999996 5789999999999 9999999888777655 57799999999
Q ss_pred CCcEEEEeeCCCcEEEEeCCcccchhcccc-----ccc--ceEEeecCCcCceeEEEEEEcC------------------
Q 014475 133 DGSFLISGSEDGCVRIWSLLTVFEECESQR-----ASH--LYLHSFTGHTLRITDIVIGYGG------------------ 187 (424)
Q Consensus 133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~i~~~~~~~~~------------------ 187 (424)
++++|++++.||.|++||++++........ ... ........|..+|.+++|++..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 999999999999999999977432110000 000 0000000012233333332210
Q ss_pred -------------------------------------------------------------ceeEEEEEeCCCcEEEEec
Q 014475 188 -------------------------------------------------------------VSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 188 -------------------------------------------------------------~~~~l~~~~~d~~v~iwd~ 206 (424)
+...+++++.|+.|++||+
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 0124566666777778877
Q ss_pred CCCceeee-------ee-cCc----------------------------------ceeEEEECCCCCEEEEEeCCCcEEE
Q 014475 207 LKGRLLRN-------IV-FPS----------------------------------VIDAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 207 ~~~~~~~~-------~~-~~~----------------------------------~i~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
.++..... +. +.. .+..++|+|++++|++|+.|++|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 65543221 00 112 2334556789999999999999999
Q ss_pred EEcCCCCCCCCCcCceeeeee-----cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC------------------
Q 014475 245 AALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH------------------ 300 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~------------------ 300 (424)
||+..+..... . .....+ .+|...|.+++|+| +++||+|+.||+|+|||+.++
T Consensus 462 Wd~~~g~~~~~-~--~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 462 YDASHGDIQDN-A--SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EESSCCTTTTT-B--CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EECCCccccCC-c--eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 99988742110 0 001112 27899999999999 999999999999999999866
Q ss_pred ---------------------------cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 301 ---------------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 301 ---------------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+++..+.+|.++|++++|+||| +||+|+.|++|++||+.+...
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 2467888999999999999999 999999999999999887543
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-41 Score=333.01 Aligned_cols=285 Identities=19% Similarity=0.303 Sum_probs=240.3
Q ss_pred CCCCceEEecceeecCC-CccccCCCCceeEEEEECCCCce------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475 34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~-~~l~~~~~~~g~i~vwd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 106 (424)
+|...|.+++ |+|++ ++|++++.| |+|++|++..... .....|...|.+++|+|++++|++|+.||.|++
T Consensus 380 ~H~~~V~~v~--~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 380 AHTDMVTAIA--TPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp CCSSCEEEEE--CCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCceeEEEE--ecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899998 99875 677888887 9999999976432 234568999999999999999999999999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
||+.++.....+.+|...|.+++|+|++++|++++.|++|++||..... .........+|...|.+++|+|+
T Consensus 457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC--------KYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE--------EEEECSSTTSCSSCEEEEEECSC
T ss_pred EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc--------ceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999985411 01111123578899999999998
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
+....+++++.|++|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||++++ +.+..+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---------~~~~~~ 599 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------KKLYSL 599 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---------EEEECC
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------ceEEEe
Confidence 755689999999999999999998888777 8899999999999999999999999999999886 344444
Q ss_pred cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-------------------CCeeEEEEEecCcee
Q 014475 266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------------GPVNNILVVRRPLYL 325 (424)
Q Consensus 266 ~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~s~~~~~l 325 (424)
. +...|.+++|+| +.+++++ .++.|++||+++++.+..+..+. ..+++++|+|+|++|
T Consensus 600 ~-~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 600 E-ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp B-CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred c-CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 4 456799999999 6666555 56679999999999888775332 137899999999999
Q ss_pred eeccCCCceeeccCC
Q 014475 326 NLGSFSNPHTSSRRH 340 (424)
Q Consensus 326 ~~~~~d~~i~iw~~~ 340 (424)
++|+.||.|++|++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999975
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=295.18 Aligned_cols=285 Identities=18% Similarity=0.251 Sum_probs=246.8
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCC
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSG 102 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg 102 (424)
+...++.+ |...|.+++ | ++++++++++.| |.|++||+.+.+.. ....|...|.+++|+|++++|++++.||
T Consensus 9 ~~~~~l~~---h~~~v~~~~--~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 9 QLSATLKG---HDQDVRDVV--A-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EEEEEECC---CSSCEEEEE--E-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHhhC---CCCCcEEEE--e-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 55566665 457788888 9 999999999988 99999999877654 4456889999999999999999999999
Q ss_pred cEEEEEccCc---ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCcee
Q 014475 103 DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (424)
Q Consensus 103 ~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (424)
.|++|++... +.+..+.+|...|.++.| +++++++++.||.|++||.. .....+..|...+.
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-------------~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-------------SLVYNLQAHNASVW 146 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-------------EEEEEEECCSSCEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-------------cEEEecccCCCcee
Confidence 9999998765 557778899999999999 47799999999999999942 24566778999999
Q ss_pred EEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 014475 180 DIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (424)
Q Consensus 180 ~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (424)
++.+.+ ++ +.+++++.|+.|++||. .+....+. +...+.+++|+|++. +++++.||.|++||++++
T Consensus 147 ~~~~~~~~~--~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------ 215 (313)
T 3odt_A 147 DAKVVSFSE--NKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------ 215 (313)
T ss_dssp EEEEEETTT--TEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------
T ss_pred EEEEccCCC--CEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------
Confidence 999999 55 89999999999999994 44444444 788999999999998 999999999999999886
Q ss_pred cCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (424)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i 336 (424)
+.+..+.+|...|++++|+|...|++++.||.|++||+++++++..+..|..+|.+++|+|+++ +++++.||.|++
T Consensus 216 ---~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 216 ---DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred ---hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 5677888999999999999933799999999999999999999999999999999999999998 667899999999
Q ss_pred ccCCCCCCC
Q 014475 337 SRRHGSQLP 345 (424)
Q Consensus 337 w~~~~~~~~ 345 (424)
|++++.+..
T Consensus 292 w~~~~~~~~ 300 (313)
T 3odt_A 292 FSQEKSRWA 300 (313)
T ss_dssp EESCGGGCC
T ss_pred EeCCCCcee
Confidence 999876543
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-41 Score=314.19 Aligned_cols=281 Identities=20% Similarity=0.204 Sum_probs=238.6
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
+..++ |+|+++++++++.+ |.|++||..+.+..........+....|+|++++|++|+.||.|++||+.+++....+
T Consensus 59 ~~~~~--~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 59 GKGNT--FEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CTTCE--EEEEETTEEEEEET-TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccee--eeecCCeEEEEEcC-CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 44556 99999999999998 9999999987665433333344555578999999999999999999999999998888
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
.+|...|.+++|+|++++|++++.||.|++||+++ ...+..+.+|...|.+++|+|++ ..|++++.|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d 202 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-----------GSNPRTLIGHRATVTDIAIIDRG--RNVLSASLD 202 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCCCEEEECCSSCEEEEEEETTT--TEEEEEETT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CcCceEEcCCCCcEEEEEEcCCC--CEEEEEcCC
Confidence 99999999999999999999999999999999965 23456678899999999999998 899999999
Q ss_pred CcEEEEecCCCceeeeee----cC---------------------cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475 199 RTCKVWSLLKGRLLRNIV----FP---------------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~----~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (424)
+.|++||+++++.+..+. +. ..+.+++|+|+++++++++.||.|++||+++..
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-- 280 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-- 280 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--
Confidence 999999999999888775 22 345555668999999999999999999998874
Q ss_pred CCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcE-EEEEec-cCCCeeEEEEEecCceeeecc
Q 014475 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNI-VRMFRL-AKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~ 329 (424)
........|...|.+++|+| +. +|++|+.||.|++||+++++. +..+.. |..+|.++ +.+++++|++++
T Consensus 281 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~ 353 (420)
T 3vl1_A 281 ------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSG 353 (420)
T ss_dssp ------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEET
T ss_pred ------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEec
Confidence 33444456889999999999 77 999999999999999998754 777777 56677777 556889999999
Q ss_pred CCCceeeccCCCCCC
Q 014475 330 FSNPHTSSRRHGSQL 344 (424)
Q Consensus 330 ~d~~i~iw~~~~~~~ 344 (424)
.|+.|++|++.....
T Consensus 354 ~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 354 FDTSIKLDIISDPES 368 (420)
T ss_dssp TTEEEEEEEECCTTC
T ss_pred CCccEEEEeccCCCC
Confidence 999999999986433
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-42 Score=326.33 Aligned_cols=305 Identities=11% Similarity=0.042 Sum_probs=225.8
Q ss_pred EEeecCCCCCceEEEeCCCCceE----EEeeCCCCCCCceEEecceeecC------CCccccCCCCceeEEEEECCCCce
Q 014475 4 LIASSSVADTGIGCWDLESGAEQ----LRYKSCASPPHGLACVGQRFLAS------SQLREQPSASSGSILYWSWSKPQV 73 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~~~g~i~vwd~~~~~~ 73 (424)
+||+++ .|++|+|||+.+++.. .++.. +...|..++ |+|+ +.+||+++.| |+|++||+..+..
T Consensus 175 ~laS~s-~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~--wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~ 247 (524)
T 2j04_B 175 MFDKEK-HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLK--WHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNAT 247 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEE--ECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSS
T ss_pred hhccCC-CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEE--ECCCCCCCCCCceEEEEecC-CeEEEEEcCCCcc
Confidence 467788 9999999999887653 23333 335688888 9986 5788888887 9999999986542
Q ss_pred e------------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeeccccCCeEEE--EEccCC-cEE
Q 014475 74 E------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCL--VFSEDG-SFL 137 (424)
Q Consensus 74 ~------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~i~~~--~~~~~~-~~l 137 (424)
. ....|...|++++|+|++ .|++|+.||+|++||++++. ....+.+|...|.++ .|+|++ ++|
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence 1 234578899999999864 89999999999999998774 455688999999999 567887 899
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc--CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
++|+.|++|++||++++. ....+.+|. ..|.+++|+|++ ..+++++.|++|++||++++.++..+
T Consensus 327 aS~S~D~tvklWD~~~~~-----------~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l 393 (524)
T 2j04_B 327 STVAVDGYFYIFNPKDIA-----------TTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPL 393 (524)
T ss_dssp EEEETTSEEEEECGGGHH-----------HHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred EEeccCCeEEEEECCCCC-----------cccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceee
Confidence 999999999999996632 122333443 357899999988 78999999999999999998876666
Q ss_pred e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-----ccCcCeEEEEecC-CCEEEEeCC
Q 014475 216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-----DHSKAVTCLAYST-GDLLISGSE 288 (424)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~l~t~~~ 288 (424)
. |...|.+++|+|++++|++|+.||+|++||..... ..... .+...+.+++|+| ++.+ ....
T Consensus 394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~----------~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~ 462 (524)
T 2j04_B 394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL----------LHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS 462 (524)
T ss_dssp EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST----------TTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh----------ccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence 5 89999999999999999999999999999986532 11111 1223577899999 6644 3322
Q ss_pred CCcEEEEeCC-CCcEEEEEeccCCCeeEEEEEecCc---eeeeccCCCceeeccCCCC
Q 014475 289 DGMVRVWDPI-THNIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 289 dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~d~~i~iw~~~~~ 342 (424)
+ +.+|+.. ++.++..+.+|.++|.+++|+|+++ .||+|+.||.|++|++...
T Consensus 463 ~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 463 S--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp C--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred C--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 2 3344433 5778888999999999999999964 9999999999999998855
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-41 Score=354.41 Aligned_cols=326 Identities=19% Similarity=0.225 Sum_probs=283.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-------
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV------- 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~------- 75 (424)
.++++++ .||.|++||+.+++.+..+.+| ...|.+++ |+|+++.+++++.| |.|++||+.+++...
T Consensus 714 ~~l~sg~-~d~~v~vwd~~~~~~~~~~~~h---~~~v~~~~--~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~ 786 (1249)
T 3sfz_A 714 LLLATGS-NDFFLKLWDLNQKECRNTMFGH---TNSVNHCR--FSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRF 786 (1249)
T ss_dssp CEEEEEE-TTSCEEEEETTSSSEEEEECCC---SSCEEEEE--ECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCC
T ss_pred eEEEEEe-CCCeEEEEECCCcchhheecCC---CCCEEEEE--EecCCCEEEEEECC-CeEEEEeCCCCcccceeccccc
Confidence 4789999 9999999999999999888764 46788888 99999999999998 999999986543211
Q ss_pred -------------------------------------------------eecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475 76 -------------------------------------------------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 76 -------------------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 106 (424)
...|...|.+++|+|+++++++++.||.|++
T Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 1145678999999999999999999999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc---------------------------
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE--------------------------- 159 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------- 159 (424)
||+.++..+..+.+|...|.+++|+|+++++++++.||.|++||+.+......
T Consensus 867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 99999999999999999999999999999999999999999999753210000
Q ss_pred -----------------------------------------ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 160 -----------------------------------------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 160 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
...........+.+|...|++++|+|++ +++++++.|
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d 1024 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSED 1024 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCC
Confidence 0001123345567899999999999998 899999999
Q ss_pred CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec
Q 014475 199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 278 (424)
|.|++||+.+++......+...+.+++++|++ .+++++.||.|++||+.++ +....+.+|...|++++|+
T Consensus 1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITG---------RIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp SBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTT---------CCCEEEECCSSCCCCEEEC
T ss_pred CEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCC---------ceeEEEcccCCcEEEEEEC
Confidence 99999999999888777799999999999965 5788999999999999887 4566788899999999999
Q ss_pred C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 279 ~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
| ++++++++.||.|++||+.+++++..+.+|.++|++++|+|++++|++++.||.|++|++.+++....
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999998776544
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=308.11 Aligned_cols=301 Identities=13% Similarity=0.187 Sum_probs=248.1
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEEC----CCCc------eeeee-c-
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW----SKPQ------VEVKS-L- 78 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~----~~~~------~~~~~-~- 78 (424)
...+.+|+++.......... |...|.+++ |+|+++ ++++++.+ |.|++|++ .+++ ..... .
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIV---KLDNIVSST--WNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHP 97 (425)
T ss_dssp ----------CCCEECEEEE---ECSCCSEEE--ECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred ccccccccchhhhhheeeee---ccCceEEEE--ECCCCCcEEEEecCC-ceEEEEEEecccCCcccccccccccccccc
Confidence 34567888765544433332 346688888 999999 99999887 99999999 7766 22221 2
Q ss_pred ---------CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 79 ---------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 79 ---------~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 466999999999999999999999999999 6788888999999999999999999999999999999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCc---------------eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLR---------------ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 214 (424)
|+.++ ..+..+..+... +.+++|++++ .+++++.++.|++||+++++.+..
T Consensus 177 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~ 242 (425)
T 1r5m_A 177 NVISG-----------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGK 242 (425)
T ss_dssp ETTTT-----------EEEEEECCC---------------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEE
T ss_pred ECCCC-----------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeee
Confidence 99653 334445555555 9999999984 689999999999999999988877
Q ss_pred ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (424)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i 292 (424)
+. +...+.+++|+|++++|++++.|+.|++||++.. .....+..|...|.+++|+| + ++++++.||.|
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i 312 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSV 312 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcE
Confidence 76 7889999999999999999999999999999886 44566778999999999999 6 99999999999
Q ss_pred EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++|++.+.+
T Consensus 313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999998654
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-40 Score=297.67 Aligned_cols=276 Identities=18% Similarity=0.266 Sum_probs=223.1
Q ss_pred EEEeecCCCCCceEEEeCCCC-------ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee
Q 014475 3 LLIASSSVADTGIGCWDLESG-------AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~ 75 (424)
.+||||+ .|++|+|||+.++ .....+.+ |...|.+++ |+|++.++++++.| ++|++||+.+++...
T Consensus 40 ~~l~sgs-~D~~v~iWd~~~~~~~~~~~~~~~~l~~---h~~~V~~~~--~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~ 112 (343)
T 2xzm_R 40 PVLISGS-RDKTVMIWKLYEEEQNGYFGIPHKALTG---HNHFVSDLA--LSQENCFAISSSWD-KTLRLWDLRTGTTYK 112 (343)
T ss_dssp CEEEEEE-TTSCEEEEEECSSCCSSBSEEEEEEECC---CSSCEEEEE--ECSSTTEEEEEETT-SEEEEEETTSSCEEE
T ss_pred CEEEEEc-CCCEEEEEECCcCCcccccccccchhcc---CCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCcEEE
Confidence 3799999 9999999998754 33444544 557789999 99999999999998 999999999877653
Q ss_pred -eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCC----------cEEEEee
Q 014475 76 -KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDG----------SFLISGS 141 (424)
Q Consensus 76 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~----------~~l~s~~ 141 (424)
...|..+|.+++|+|++++|++++.|+.|++||+... ..... ..|...|.+++|+|++ .+|++++
T Consensus 113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 3568999999999999999999999999999999743 33232 3688999999999986 7899999
Q ss_pred CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCceeeeeecCcc
Q 014475 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSV 220 (424)
Q Consensus 142 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~ 220 (424)
.||.|++||.. ......+.+|...|.+++|+|++ ++|++++.|+.|++||+. .......+.+...
T Consensus 192 ~d~~i~iwd~~------------~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 192 WDGRLKVWNTN------------FQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp TTSEEEEEETT------------TEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred CCCEEEEEcCC------------CceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 99999999952 22355678899999999999998 899999999999999994 4455555667778
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC--CC--cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST--SS--YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw 295 (424)
|.+++|+|++.+++++ .|+.+++|++.+..... .. ..........+|...|.+++|+| +++|++|+.||.|++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 9999999999887655 57789999998764321 00 00000111236888999999999 9999999999999999
Q ss_pred eCCCCc
Q 014475 296 DPITHN 301 (424)
Q Consensus 296 d~~~~~ 301 (424)
+++++.
T Consensus 337 ~~~~g~ 342 (343)
T 2xzm_R 337 SFETSA 342 (343)
T ss_dssp EEEEEE
T ss_pred EEEccC
Confidence 987653
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-40 Score=347.25 Aligned_cols=332 Identities=17% Similarity=0.181 Sum_probs=279.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~ 82 (424)
+||+|+ .||+|+|||+.+++.+.++.+| ...|.+++ |+|+++++++++.| |.|++||+.+++.... ..|...
T Consensus 629 ~l~s~~-~d~~i~vw~~~~~~~~~~~~~h---~~~v~~~~--~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~ 701 (1249)
T 3sfz_A 629 RIASCG-ADKTLQVFKAETGEKLLDIKAH---EDEVLCCA--FSSDDSYIATCSAD-KKVKIWDSATGKLVHTYDEHSEQ 701 (1249)
T ss_dssp EEEEEE-TTSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEEe-CCCeEEEEECCCCCEEEEeccC---CCCEEEEE--EecCCCEEEEEeCC-CeEEEEECCCCceEEEEcCCCCc
Confidence 689999 9999999999999999988754 46789999 99999999999987 9999999998876544 568999
Q ss_pred eeEEEECC--CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 83 IKPIAANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 83 v~~~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
|.+++|+| ++.++++|+.||.|++||+.+++.+..+.+|...|++++|+|+++++++++.||.|++||+.++......
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCccccee
Confidence 99999999 5668999999999999999999999999999999999999999999999999999999999765321110
Q ss_pred cc-------------------------------------------cccceE-EeecCCcCceeEEEEEEcCceeEEEEEe
Q 014475 161 QR-------------------------------------------ASHLYL-HSFTGHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 161 ~~-------------------------------------------~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
.. ...... ....+|...+.+++|+|++ ..+++++
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~ 859 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HLAVIAL 859 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TEEEEEC
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CEEEEEe
Confidence 00 000111 1223788999999999998 8999999
Q ss_pred CCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCce---------------
Q 014475 197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH--------------- 260 (424)
Q Consensus 197 ~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------- 260 (424)
.|+.|++||+.+++.+..+. |...|.+++|+|++..+++++.||.+++|++.............
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence 99999999999998888877 88899999999999999999999999999986432111000000
Q ss_pred -------------eeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceee
Q 014475 261 -------------IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLN 326 (424)
Q Consensus 261 -------------~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 326 (424)
.......+...+.+++++| ++++++|+.||.|++||+.+++.+..+.+|.++|++++|+|++++|+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1019 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1019 (1249)
T ss_dssp EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE
T ss_pred ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE
Confidence 0001112356799999999 99999999999999999999999999999999999999999999999
Q ss_pred eccCCCceeeccCCCCCC
Q 014475 327 LGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 327 ~~~~d~~i~iw~~~~~~~ 344 (424)
+++.||.|++|++.+++.
T Consensus 1020 s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EECSSSBEEEEETTTTEE
T ss_pred EEcCCCEEEEEECCCCce
Confidence 999999999999987654
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-41 Score=304.90 Aligned_cols=289 Identities=17% Similarity=0.194 Sum_probs=243.5
Q ss_pred CCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEECCC----CCEEEEec
Q 014475 34 SPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSH----GTYIAGGG 99 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~s~~----~~~l~~~~ 99 (424)
+|...|.+++ |+|+ ...+++++.+ +.|++||+.+++..... .+...|.+++|+|+ +++|++|+
T Consensus 16 ~h~~~v~~i~--~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 16 DHNQPLFGVQ--FNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp TTCSCEEEEE--ECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCceEEEE--EecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 4668899999 9984 4455566665 79999999866543221 25688999999998 67999999
Q ss_pred CCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee---cCCc
Q 014475 100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---TGHT 175 (424)
Q Consensus 100 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~ 175 (424)
.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++ ......+ ..|.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-----------DTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-----------TEEEEEECSTTSCS
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-----------CeEEEEeccccccc
Confidence 999999999999999999999999999999999 999999999999999999965 2334444 6899
Q ss_pred CceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----------------------------cCcceeEEEE
Q 014475 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIAL 226 (424)
Q Consensus 176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~ 226 (424)
..|.+++|+|++ ..|++++.||.|++||+++++....+. +...|.+++|
T Consensus 162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 999999999988 899999999999999999876554332 7788999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCC-----CcCceeeeeecccCcCeEEEEecC---CCEEEEeCCCCcEEEEeCC
Q 014475 227 DPAEHVFYAGSRDGSIYIAALNAESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~---~~~l~t~~~dg~i~iwd~~ 298 (424)
+ ++++++++.|+.|++||++....... ......+..+..|...|++++|+| +++|++|+.||.|++||+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8 77999999999999999988653111 112245677888999999999987 5899999999999999999
Q ss_pred CCc----EEEEEecc--CCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 299 THN----IVRMFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 299 ~~~----~~~~~~~~--~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+++ ....+..| ..+|++++|+|++++|++++.||.|++||+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 875 44577777 7899999999999999999999999999975
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-41 Score=313.09 Aligned_cols=302 Identities=12% Similarity=0.098 Sum_probs=244.7
Q ss_pred EEeCCCCceEEEe-eCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCC---Cc---eeeeecCCCCeeEEEE
Q 014475 17 CWDLESGAEQLRY-KSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSK---PQ---VEVKSLPAEPIKPIAA 88 (424)
Q Consensus 17 vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~---~~---~~~~~~~~~~v~~~~~ 88 (424)
.|+ .+++.+.++ .+ |...|.+++ |+| +++++++++.| |+|++||+.+ +. ......|..+|.+++|
T Consensus 47 ~w~-~~g~~~~~~~~~---h~~~V~~~~--~s~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 119 (437)
T 3gre_A 47 MGN-LRGKLIATLMEN---EPNSITSSA--VSPGETPYLITGSDQ-GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM 119 (437)
T ss_dssp GGG-CCCCEEEEECTT---TTSCEEEEE--EECSSSCEEEEEETT-SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE
T ss_pred ccc-ccceEEeeeccC---CCCceEEEE--ECCCCCCEEEEecCC-ceEEEeECcccccCcccceeeeccCCCCEEEEEE
Confidence 588 557888877 43 557899999 999 99999999988 9999999876 32 2334468999999999
Q ss_pred CCCCCEEEEecCCCcEEEEEcc---Ccceeeeecc------------ccCCeEEEE--EccCCcEEEEeeCCCcEEEEeC
Q 014475 89 NSHGTYIAGGGQSGDIYMWEVA---SGRLLKKWHA------------HYRAVTCLV--FSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 89 s~~~~~l~~~~~dg~v~iwd~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
+|++++|++|+.||.|++||++ +++....+.. +...+.++. +++++++|++++.||.|++||+
T Consensus 120 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 120 IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999999995 5544443322 455677777 5578999999999999999999
Q ss_pred CcccchhcccccccceEEeecC--CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEEC
Q 014475 152 LTVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALD 227 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~ 227 (424)
++ ...+..+.. |...|++++|+|++ .+|++++.||.|++||+++++++..+. +...|.+++|+
T Consensus 200 ~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 200 RT-----------LERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp TT-----------CCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred CC-----------CeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 65 334566666 89999999999998 899999999999999999999988774 67789999666
Q ss_pred C----CCCEEEEEeCCCcEEEEEcCCCCCCCCCc---------Cceee------eeecc--cCcCeEEEEecCCCEEEEe
Q 014475 228 P----AEHVFYAGSRDGSIYIAALNAESPSTSSY---------GMHII------GSLSD--HSKAVTCLAYSTGDLLISG 286 (424)
Q Consensus 228 ~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~------~~~~~--~~~~i~~~~~~~~~~l~t~ 286 (424)
| ++.++++++.||.|++||++++....... .+.+. ..+.+ |...|++++|+++++|++|
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~ 346 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTD 346 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEec
Confidence 4 67899999999999999998764211000 00000 01223 7788999999988899999
Q ss_pred CCCCcEEEEeCCCCcEEEEEec-------------------------------------cCCCeeEEEEEec--Cceeee
Q 014475 287 SEDGMVRVWDPITHNIVRMFRL-------------------------------------AKGPVNNILVVRR--PLYLNL 327 (424)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~l~~s~~--~~~l~~ 327 (424)
+.||.|++||+.+++.+..+.+ |...|++++|+++ +.+|++
T Consensus 347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 9999999999999988777765 7889999999998 889999
Q ss_pred ccCCCceeecc
Q 014475 328 GSFSNPHTSSR 338 (424)
Q Consensus 328 ~~~d~~i~iw~ 338 (424)
|+.||.|++|+
T Consensus 427 ~~~dG~I~iw~ 437 (437)
T 3gre_A 427 CDNSGLIGIFQ 437 (437)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCceEEEeC
Confidence 99999999995
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-40 Score=301.86 Aligned_cols=286 Identities=12% Similarity=0.130 Sum_probs=241.7
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
|...|.+++ |+|+++++++++.+ +.|++||+.+++ ......|...|.+++|+|++++|++++.||.|++||+++
T Consensus 7 ~~~~i~~~~--~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 7 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred cCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 456788888 99999999999887 999999998885 334456899999999999999999999999999999988
Q ss_pred cceeee--eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 112 GRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 112 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
++.... +..|...|.+++|+|++++|++++.||.|++||++.... ..........|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-- 154 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------WWVCKHIKKPIRSTVLSLDWHPNS-- 154 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------EEEEEEECTTCCSCEEEEEECTTS--
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------ceeeeeeecccCCCeeEEEEcCCC--
Confidence 875443 467899999999999999999999999999999965211 011223346789999999999988
Q ss_pred eEEEEEeCCCcEEEEecC------------------CCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
.++++++.|+.|++||++ .++.+..+. +...+.+++|+|++++|++++.|+.|++||+++.
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 899999999999999954 567777775 7889999999999999999999999999999986
Q ss_pred CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC--CcE-------------------------
Q 014475 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNI------------------------- 302 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~--~~~------------------------- 302 (424)
+.+..+..|..+|.+++|+| +.++++| .|+.|++|++.+ ++.
T Consensus 235 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 235 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred ---------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 56777888999999999999 7777777 899999999987 421
Q ss_pred -------E------EEE-eccCCCeeEEEEE-ecC---ceeeeccCCCceeeccCCCC
Q 014475 303 -------V------RMF-RLAKGPVNNILVV-RRP---LYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 303 -------~------~~~-~~~~~~v~~l~~s-~~~---~~l~~~~~d~~i~iw~~~~~ 342 (424)
. ..+ .+|.++|++++|+ ++| .+|++++.||.|++|++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 223 3899999999977 566 89999999999999998753
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.3e-40 Score=306.24 Aligned_cols=299 Identities=17% Similarity=0.250 Sum_probs=254.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
.+|++|+ .||+|++||+.+++.+..+.+| ...|.+++ |++++ .+++++.| |+|++||+++++.... ..|..
T Consensus 133 ~~l~sgs-~dg~i~vwd~~~~~~~~~~~~h---~~~V~~l~--~~~~~-~l~s~s~d-g~i~vwd~~~~~~~~~~~~h~~ 204 (464)
T 3v7d_B 133 NYVITGA-DDKMIRVYDSINKKFLLQLSGH---DGGVWALK--YAHGG-ILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS 204 (464)
T ss_dssp TEEEEEE-TTSCEEEEETTTTEEEEEECCC---SSCEEEEE--ECSTT-EEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEc-CCCcEEEEECCCCcEEEEEeCC---CcCEEEEE--EcCCC-EEEEEeCC-CCEEEEECCCCcEEEEECCCCC
Confidence 3689999 9999999999999999888754 46788888 99888 78888887 9999999998876544 45899
Q ss_pred CeeEEEEC--CCCCEEEEecCCCcEEEEEccCcce-----------------------eeeeccccCCeEEEEEccCCcE
Q 014475 82 PIKPIAAN--SHGTYIAGGGQSGDIYMWEVASGRL-----------------------LKKWHAHYRAVTCLVFSEDGSF 136 (424)
Q Consensus 82 ~v~~~~~s--~~~~~l~~~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~i~~~~~~~~~~~ 136 (424)
+|.+++|+ ++++++++|+.||.|++||+.++.. ...+.+|...+.++ ++++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence 99999998 5789999999999999999987653 44567888888887 467889
Q ss_pred EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (424)
Q Consensus 137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 216 (424)
+++++.||.|++||+++ ...+..+.+|...|.+++|++++ ..+++++.||.|++||+++++++..+.
T Consensus 283 l~~~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 99999999999999954 44567788999999999999998 899999999999999999999998887
Q ss_pred -cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEE
Q 014475 217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (424)
Q Consensus 217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~i 294 (424)
|...+.+++++ +.++++++.||.|++||+++.. ..... .|...+..++|++ +.++++|+ ||.|++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---------RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---------EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---------eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 88999999997 5899999999999999998853 12222 3666788888999 88999988 899999
Q ss_pred EeCCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 295 WDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 295 wd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
||+++++++.. +..|.++|.+++|+ ....+++++.||.+.+|-
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999999986 66788999999997 445566667777666554
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.2e-40 Score=299.49 Aligned_cols=276 Identities=19% Similarity=0.297 Sum_probs=226.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCC---------------CCCceEEecceeecCCCccccCCCCceeEEEEEC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSW 68 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~ 68 (424)
+||+++ +++++||++.+|+.+..+..+.. +...|.+++ |+|+++++++++.| +.|++||+
T Consensus 78 ~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~l~s~~~d-~~i~iwd~ 152 (393)
T 1erj_A 78 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI 152 (393)
T ss_dssp EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred EEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCEEEEEcCC-CeEEEEEC
Confidence 577776 78999999999999888865532 223488888 99999999999988 99999999
Q ss_pred CCCceee-eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcE
Q 014475 69 SKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV 146 (424)
Q Consensus 69 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i 146 (424)
.+++... ...|...|.+++|+|++++|++++.|++|++||+++++....+. +...+.+++|+| ++++|++|+.||.|
T Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 9887653 35689999999999999999999999999999999998877775 567899999999 89999999999999
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc------------eeee
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------------LLRN 214 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------~~~~ 214 (424)
++||++++....... .......+|...|.+++|+|++ .+|++++.|+.|++||+++.. +...
T Consensus 232 ~iwd~~~~~~~~~~~----~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 232 RVWDSETGFLVERLD----SENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp EEEETTTCCEEEEEC----------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred EEEECCCCcEEEeec----ccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 999997632211100 0011225799999999999998 899999999999999997643 2333
Q ss_pred ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-------CCEEEEe
Q 014475 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-------GDLLISG 286 (424)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~l~t~ 286 (424)
+. |...|.+++|+|++.+|++|+.|+.|++||..++ .++..+.+|...|.+++|++ +++|++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 33 7788999999999999999999999999999886 55778889999999999875 5789999
Q ss_pred CCCCcEEEEeCCCC
Q 014475 287 SEDGMVRVWDPITH 300 (424)
Q Consensus 287 ~~dg~i~iwd~~~~ 300 (424)
+.||+|++|++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999997643
No 56
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-40 Score=289.87 Aligned_cols=252 Identities=18% Similarity=0.175 Sum_probs=212.3
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC--cceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEe
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWS 150 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd 150 (424)
....|.+.|.+++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|.++|.+++|+| ++++|++|+.||+|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 3456899999999999999999999999999999974 367788999999999999986 488999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce--eeee-ecCcceeEEEEC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNI-VFPSVIDAIALD 227 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~-~~~~~i~~~~~~ 227 (424)
++++ ....+..+..|...|.+++|+|+..+.+|++++.|+.|++||++++.. ...+ .|...+.+++|+
T Consensus 84 ~~~~---------~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 84 EENG---------RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp BSSS---------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEEC
T ss_pred cCCC---------ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeec
Confidence 9652 223345667899999999999973338999999999999999987642 2223 378899999999
Q ss_pred CC-------------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C---CEEEEeCCCC
Q 014475 228 PA-------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G---DLLISGSEDG 290 (424)
Q Consensus 228 ~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~l~t~~~dg 290 (424)
|+ +++|++|+.|+.|++||++..... ......+.+|...|.+++|+| + .+|++++.|+
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 97 579999999999999999875311 124567889999999999999 4 7999999999
Q ss_pred cEEEEeCCCCc---EEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 291 MVRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 291 ~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+|++||+++.. ....+ ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 230 ~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999998743 22233 4678899999999999999999999999999976
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-39 Score=287.41 Aligned_cols=267 Identities=24% Similarity=0.367 Sum_probs=232.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-eecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~~~~~~ 81 (424)
.+||+++ .||.|+|||+.+++....+..| ...|.+++ |+|+++++++++.| |.|++||+.+++... ...|..
T Consensus 36 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~ 108 (312)
T 4ery_A 36 EWLASSS-ADKLIKIWGAYDGKFEKTISGH---KLGISDVA--WSSDSNLLVSASDD-KTLKIWDVSSGKCLKTLKGHSN 108 (312)
T ss_dssp SEEEEEE-TTSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEee-CCCeEEEEeCCCcccchhhccC---CCceEEEE--EcCCCCEEEEECCC-CEEEEEECCCCcEEEEEcCCCC
Confidence 3689999 9999999999999998888654 46788888 99999999999998 999999999887653 356889
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
.|.+++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||++++
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~------- 181 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG------- 181 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999652
Q ss_pred ccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcc---eeEEEECCCCCEEEEE
Q 014475 162 RASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV---IDAIALDPAEHVFYAG 236 (424)
Q Consensus 162 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~---i~~~~~~~~~~~l~~~ 236 (424)
..+.. ...+...+..++|+|++ +++++++.|+.|++||+++++.+..+. +... +......+++.++++|
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 182 ----QCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ----CEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ----ceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 22233 34567789999999998 899999999999999999999888776 3332 2333345688999999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCC
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPI 298 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~ 298 (424)
+.||.|++||+++. +.+..+.+|...|.+++|+| ++++++++ .|+.|++|+..
T Consensus 256 ~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999886 56778899999999999999 99999886 69999999864
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=306.26 Aligned_cols=314 Identities=11% Similarity=0.118 Sum_probs=253.0
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeee------------
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKS------------ 77 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------------ 77 (424)
.++.+++|+++.++....+.. |...|.+++ |+| +++++++++.+ |.|++||+.+.+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERI---HGGGINTLD--IEPVEGRYMLSGGSD-GVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCC---CSSCEEEEE--ECTTTCCEEEEEETT-SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred ccCcceeeccccCcceeeeec---cCCcEEEEE--EecCCCCEEEEEcCC-CeEEEEECCCCcccceEeccccccccccc
Confidence 356788999988888877765 557899999 999 99999999998 99999999977654332
Q ss_pred --cCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeC
Q 014475 78 --LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 78 --~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~ 151 (424)
.|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+| ++.++++++.||.|++||+
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 3889999999999 78899999999999999999998887776 778899999998 4459999999999999999
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeee---------------
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI--------------- 215 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~--------------- 215 (424)
++ ......+..|...|.+++|+|++. ..+++++.||.|++||++++. ....+
T Consensus 174 ~~-----------~~~~~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 174 KS-----------GSCSHILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp SS-----------SCCCEEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred CC-----------cceeeeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 65 334566788999999999999983 369999999999999998765 22222
Q ss_pred -ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE-EEEecCCCEEEEeCCCCcEE
Q 014475 216 -VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYSTGDLLISGSEDGMVR 293 (424)
Q Consensus 216 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~t~~~dg~i~ 293 (424)
.+...|.+++|+|++++|++++.||.|++||++++......... ........+. .....++..+++++.|+.|+
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEE
Confidence 36778999999999999999999999999999987532211100 0011111222 22222367777788899999
Q ss_pred EEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
+||+.+++++..+.+|.++|++++|+|++++|++++.||.|++|++.+.++...
T Consensus 318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred EEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 999999999999999999999999999999999999999999999998766543
No 59
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.7e-41 Score=309.93 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=222.1
Q ss_pred CCCceEEecceeecC-CCccccCCCCceeEEEEECCCCceee---eecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEc
Q 014475 35 PPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV 109 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~ 109 (424)
+...|++++ |+|. +++||+|+.| |.|+|||+.+++... ...|.++|++++|+| ++++|++|+.||+|++||+
T Consensus 118 ~~~~V~~l~--~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 118 FDRRATSLA--WHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp CSSCEEEEE--ECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456799999 9995 5677788877 999999998765432 245899999999998 7899999999999999999
Q ss_pred cCcceeeeec--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475 110 ASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 110 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (424)
+++....... .+...+.+++|+|++++|++|+.||.|++||++. ..+..+.+|...|.+++|+|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------------~~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------------KELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------------CBCCCSBCCSSCEEEEEECTTC
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------------ceeEEEecccceEEeeeecCCC
Confidence 8765433333 3445678999999999999999999999999853 1345678899999999999987
Q ss_pred ceeEEEEEeCCCcEEEEecCCCceeeee----ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
. .++++++.|+.|++||+++.+....+ .|...|.+++|+|++.+|++++.||.|++||++.... ..
T Consensus 263 ~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~---------~~ 332 (435)
T 4e54_B 263 D-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC---------PL 332 (435)
T ss_dssp S-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS---------EE
T ss_pred c-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc---------ce
Confidence 4 58889999999999999887654433 3788999999999999999999999999999988642 22
Q ss_pred eecccC------cCeEEEEecC-CCEEEEeC------------CCCcEEEEeCCCCcEEEEEe-ccCCCeeEE-EEEecC
Q 014475 264 SLSDHS------KAVTCLAYST-GDLLISGS------------EDGMVRVWDPITHNIVRMFR-LAKGPVNNI-LVVRRP 322 (424)
Q Consensus 264 ~~~~~~------~~i~~~~~~~-~~~l~t~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~~ 322 (424)
.+..|. ..+....|+| +..+++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 333 GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG 412 (435)
T ss_dssp EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence 222221 1122334555 44444442 34679999999999998875 677889887 699999
Q ss_pred ceeeeccCCCceeeccCCCCCC
Q 014475 323 LYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 323 ~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
++|++|+ |+.|++|+++.+++
T Consensus 413 ~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 413 DTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SCEEEEC-SSEEEECCCC----
T ss_pred CEEEEEc-CCcEEEEECCcCee
Confidence 9999876 78999999987654
No 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=333.32 Aligned_cols=317 Identities=13% Similarity=0.134 Sum_probs=241.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
+||+|+ .||+|+|||..+++....+. +...|.+++ |+| +++|++++.| ++|++||+.+++......+...|
T Consensus 31 ~lAsgs-~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~--fsp-g~~L~S~s~D-~~v~lWd~~~~~~~~~~~~~~~V 101 (902)
T 2oaj_A 31 LLAIAT-VTGEVHIYGQQQVEVVIKLE----DRSAIKEMR--FVK-GIYLVVINAK-DTVYVLSLYSQKVLTTVFVPGKI 101 (902)
T ss_dssp EEEEEE-TTSEEEEECSTTCEEEEECS----SCCCEEEEE--EET-TTEEEEEETT-CEEEEEETTTCSEEEEEECSSCE
T ss_pred EEEEEe-CCCEEEEEeCCCcEEEEEcC----CCCCEEEEE--EcC-CCEEEEEECc-CeEEEEECCCCcEEEEEcCCCCE
Confidence 789999 99999999998877665542 346799999 999 8889999887 99999999988876666678899
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCccee-----------eeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeC
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~ 151 (424)
++++|+|++++|++|+.||.|++||+++++.. ..+.+|.+.|.+++|+|+ +..+++|+.||.| +||+
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 99999999999999999999999999988653 334679999999999995 5789999999999 9999
Q ss_pred CcccchhcccccccceEEeec------------------CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee
Q 014475 152 LTVFEECESQRASHLYLHSFT------------------GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR 213 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 213 (424)
+++. ....+. .|...|++++|+|++ .+|++++.||.|++||+++++++.
T Consensus 181 ~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 181 VENE-----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TTTE-----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCc-----------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEEE
Confidence 7632 222333 346789999999998 899999999999999999988765
Q ss_pred e--ee-----------------cCcceeEEEEC----CCC-CEEEEEeCC-----CcEEEEEcC----------------
Q 014475 214 N--IV-----------------FPSVIDAIALD----PAE-HVFYAGSRD-----GSIYIAALN---------------- 248 (424)
Q Consensus 214 ~--~~-----------------~~~~i~~~~~~----~~~-~~l~~~~~d-----g~i~i~d~~---------------- 248 (424)
. +. +...|.+++|+ |++ .++++|+.+ ..+.+|++.
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 3 21 13468899994 443 456666544 256666631
Q ss_pred -------------------------------------------------------CCCCCCCC-----------cC----
Q 014475 249 -------------------------------------------------------AESPSTSS-----------YG---- 258 (424)
Q Consensus 249 -------------------------------------------------------~~~~~~~~-----------~~---- 258 (424)
++...... ..
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 11000000 00
Q ss_pred -----------------ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE----EEE--e-----cc
Q 014475 259 -----------------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV----RMF--R-----LA 309 (424)
Q Consensus 259 -----------------~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~----~~~--~-----~~ 309 (424)
......+.+|...+.+++|+| +++|++|+.|++|++||+.++... ... . +|
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 000001223334444555678 889999999999999999887421 111 1 78
Q ss_pred CCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
...|++++|+||+++||+|+.||+|++|++.+.+
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 8999999999999999999999999999998764
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=299.68 Aligned_cols=277 Identities=15% Similarity=0.211 Sum_probs=235.5
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 123 (424)
+.+++..+++++.+ |.|++||..+++..... .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus 99 ~~~s~~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 99 LDWSNLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp EEECTTSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EeecCCCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence 44455678888877 99999999988765433 3688999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
.|.+++|+ ++.+++++.||.|++||++. .......+.+|...|.+++|+|++ .+|++++.|+.|++
T Consensus 178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~i 243 (401)
T 4aez_A 178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRI----------ANHQIGTLQGHSSEVCGLAWRSDG--LQLASGGNDNVVQI 243 (401)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEE
T ss_pred ceEEEEEC--CCEEEEEcCCCCEEEEeccc----------CcceeeEEcCCCCCeeEEEEcCCC--CEEEEEeCCCeEEE
Confidence 99999995 67999999999999999964 234566788899999999999988 89999999999999
Q ss_pred EecCCCceeeeee-cCcceeEEEECCCCC-EEEEEe--CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 204 WSLLKGRLLRNIV-FPSVIDAIALDPAEH-VFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
||+++++....+. +...|.+++|+|++. ++++++ .|+.|++||++++ ..+..+ .+...|.+++|+|
T Consensus 244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~s~ 313 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIWSP 313 (401)
T ss_dssp EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEECS
T ss_pred ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEECC
Confidence 9999998888776 889999999999764 555554 7999999999986 344444 3678899999999
Q ss_pred -CCEEEE--eCCCCcEEEEeCCCCcEEE--EEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCCCC
Q 014475 280 -GDLLIS--GSEDGMVRVWDPITHNIVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (424)
Q Consensus 280 -~~~l~t--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 347 (424)
+.++++ |+.||.|++||+.+++... .+.+|.+.|.+++|+|++++|++++.||.|++|++.+++....
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 899988 5589999999999866554 4678999999999999999999999999999999987765443
No 62
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-41 Score=307.23 Aligned_cols=284 Identities=11% Similarity=0.051 Sum_probs=225.0
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCC--cee-eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~--~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 113 (424)
..|.+++ |+|+++++++++.+ |.|++||+.++ +.. ....|..+|.+++|+|++++|++++.||.|++||+.+++
T Consensus 12 ~~v~~~~--~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 12 KPSYEHA--FNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp SCCSCCE--ECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred CcEEEEE--ECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 5677888 99999999999887 99999999876 332 334688999999999999999999999999999999887
Q ss_pred ---eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCce
Q 014475 114 ---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVS 189 (424)
Q Consensus 114 ---~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 189 (424)
....+..|...|.+++|+|++++|++++.|+.|++||+++.. .......+.. |...|.+++|+|++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~-- 158 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--------DWWVSKHLKRPLRSTILSLDWHPNN-- 158 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------------CCCCEEECSSCCSCEEEEEECTTS--
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc--------cceeeeEeecccCCCeEEEEEcCCC--
Confidence 667778899999999999999999999999999999997631 1113445666 99999999999988
Q ss_pred eEEEEEeCCCcEEEEecC------------------CCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
.+|++++.|+.|++||++ .++++..+.|...|.+++|+|++++|++++.||.|++||++++.
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 899999999999999985 34455555678889999999999999999999999999999874
Q ss_pred CCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-----------------------------
Q 014475 252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN----------------------------- 301 (424)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~----------------------------- 301 (424)
.. ...+..+.+|...|.+++|+| +.+|++|+.++.+ +|+.....
T Consensus 239 ~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 239 QP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp SC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred Cc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence 21 123667888999999999999 8899888877665 66654211
Q ss_pred -EE------EEEe----------------ccCCCeeEEEEEecCc----eeeeccCCCceeeccC
Q 014475 302 -IV------RMFR----------------LAKGPVNNILVVRRPL----YLNLGSFSNPHTSSRR 339 (424)
Q Consensus 302 -~~------~~~~----------------~~~~~v~~l~~s~~~~----~l~~~~~d~~i~iw~~ 339 (424)
.+ ..+. .|.+.|+++.+.+... .|++++.||.|++|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 1111 2899999999876543 5999999999999985
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.6e-39 Score=299.02 Aligned_cols=278 Identities=19% Similarity=0.277 Sum_probs=234.0
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
+..++ |+++ +.|+++. | ++|+|||..+++.... ..|...|++++|+|+|++|++|+.||.|++||+++++.+
T Consensus 108 ~~~l~--wS~~-n~lAvgl-d-~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 108 LNLVD--WSSG-NVLAVAL-D-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CBCEE--ECTT-SEEEEEE-T-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceeEE--ECCC-CEEEEEe-C-CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 34566 8865 4666654 5 9999999999876533 246778999999999999999999999999999999999
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
..+.+|...+.++.++ +..+++|+.|+.+++||... ....+..+.+|...+..+.+.+++ ..++++
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~s~ 248 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASG 248 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEE
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc----------cceeeEEecccccceeeeeecCCC--Ceeeee
Confidence 9999999999998885 67999999999999999865 334567788999999999999998 899999
Q ss_pred eCCCcEEEEecCCCcee----eee-ecCcceeEEEECCCC-CEEEE--EeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475 196 SEDRTCKVWSLLKGRLL----RNI-VFPSVIDAIALDPAE-HVFYA--GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (424)
Q Consensus 196 ~~d~~v~iwd~~~~~~~----~~~-~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (424)
+.|+.+++||..+++.. ... .+...|.+++|+|.+ ..+++ |+.|+.|++||+.++ .....+.
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~- 318 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVD- 318 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEE-
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---------ccceeec-
Confidence 99999999999876532 222 377899999999965 45554 357999999999986 4455554
Q ss_pred cCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 268 HSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 268 ~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+...+.++.|+| ++.+++++ .|+.|+|||+.+++++.++.+|.++|++++|+|+|++|++|+.|++|++|++....+
T Consensus 319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 446788999999 77777654 799999999999999999999999999999999999999999999999999976544
Q ss_pred C
Q 014475 345 P 345 (424)
Q Consensus 345 ~ 345 (424)
.
T Consensus 399 ~ 399 (420)
T 4gga_A 399 A 399 (420)
T ss_dssp C
T ss_pred c
Confidence 3
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-39 Score=314.84 Aligned_cols=300 Identities=17% Similarity=0.234 Sum_probs=261.8
Q ss_pred EEeecCCCCCceEEEeCCCC----ceEEEeeCCCCCCCc-eEEecceeec--CCCccccCCCCceeEEEEECCCC-----
Q 014475 4 LIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHG-LACVGQRFLA--SSQLREQPSASSGSILYWSWSKP----- 71 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~l~~~~~~~g~i~vwd~~~~----- 71 (424)
+||+++ ++.|+|||++++ +....+.+| ... |.+++ |+| +++++++++.+ |.|++||+.++
T Consensus 32 ~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h---~~~~v~~~~--~sp~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 32 AIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGH---GSSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEEEEE--TTEEEEEECCSSCCSSCSEEEECTT---TTSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTE
T ss_pred EEEEec--CCeEEEEECCCCCCccccceEEecC---CCceEEEEE--ECcCCCCCEEEEecCC-CEEEEEeCCCCccccc
Confidence 566766 789999999999 888888765 466 89999 999 99999999997 99999999644
Q ss_pred ---cee-eeecCCCCeeEEEECCCCCEEEEecCC----CcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeC
Q 014475 72 ---QVE-VKSLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSE 142 (424)
Q Consensus 72 ---~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~ 142 (424)
+.. ....|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|+++ .+++++.
T Consensus 104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 181 (615)
T 1pgu_A 104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 181 (615)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence 222 234578999999999999999999887 6788887 6778888999999999999999998 8999999
Q ss_pred CCcEEEEeCCcccchhcccccccceEEeecCCcC---ceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeee---
Q 014475 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI--- 215 (424)
Q Consensus 143 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--- 215 (424)
||.|++||+.+ ......+..|.. .|.+++|+|+ + +++++++.|+.|++||+++++.+..+
T Consensus 182 d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 182 DGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp TTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 99999999854 445677888998 9999999999 7 89999999999999999999999988
Q ss_pred --ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc----CcCeEEEEecCCCEEEEeCCC
Q 014475 216 --VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 216 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~t~~~d 289 (424)
.+...|.+++|+ ++.++++++.|+.|++||+++. +.+..+..+ ...+.++.|+.++++++++.|
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence 688999999999 9999999999999999999976 445555554 477888888669999999999
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|.|++||+.+++++..+.+|.++|++++| |+ |++++.||.|++|++.
T Consensus 319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 99999999999999999999999999999 77 8888888888888865
No 65
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-39 Score=292.38 Aligned_cols=282 Identities=15% Similarity=0.179 Sum_probs=242.5
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
..+.+++ |+|+|+.++++..+ +.+..|...... ......|..+|.+++|+|+++++++++ ||.|++||+.+++..
T Consensus 10 ~~v~~~~--~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 10 KPAYSFH--VTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EECCEEE--ECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred CceeEEE--ECCCCCEEEeecCC-CcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 4577788 99999999988877 556666544433 334456899999999999999999998 999999999887543
Q ss_pred eee---c--cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 116 KKW---H--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 116 ~~~---~--~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
..+ . .|...|.+++|+|++++|++++.||.|++||+++ ........+..|...+.+++|+|++ +
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~ 154 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------PTPRIKAELTSSAPACYALAISPDS--K 154 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---------C--EEEEEEECSSSCEEEEEECTTS--S
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CCcceeeecccCCCceEEEEECCCC--C
Confidence 333 2 6889999999999999999999999999999976 2233456678899999999999988 8
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
.+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.||.|++||++.. +.+..+ .|.
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~-~~~ 224 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQH-DFT 224 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-ECS
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---------ceEeee-cCC
Confidence 99999999999999999999888887 7889999999999999999999999999999886 333333 477
Q ss_pred cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
..+.+++|+| ++++++++.|+.|++||+++++.. .+..|..+|.+++|+|++++|++++.||.|++|++.+.+.
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 8899999999 999999999999999999988754 5678999999999999999999999999999999987654
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-39 Score=296.24 Aligned_cols=276 Identities=15% Similarity=0.225 Sum_probs=236.1
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCe
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPI 83 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v 83 (424)
+++++ .||.|++||+.+++....+... +...|.+++ |+|+++++++++.+ |.|++||+.+++.... ..|...|
T Consensus 106 l~~~~-~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~--~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v 179 (401)
T 4aez_A 106 VVAVA-LERNVYVWNADSGSVSALAETD--ESTYVASVK--WSHDGSFLSVGLGN-GLVDIYDVESQTKLRTMAGHQARV 179 (401)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEEECC--TTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred EEEEE-CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEE--ECCCCCEEEEECCC-CeEEEEECcCCeEEEEecCCCCce
Confidence 56677 7999999999999988877653 557799999 99999999999987 9999999998776544 4688999
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEcc-CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
.+++| +++++++|+.||.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------- 248 (401)
T 4aez_A 180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------- 248 (401)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---------
T ss_pred EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---------
Confidence 99999 56799999999999999998 5667788889999999999999999999999999999999954
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE--eC
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG--SR 238 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~ 238 (424)
......+..|...|.+++|+|++. ..+++++ .|+.|++||+++++.+..+.+...+.+++|+|+++.++++ +.
T Consensus 249 --~~~~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 249 --SIPKFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp --SSEEEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred --CCccEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 345667788999999999999764 5677765 7999999999999999999999999999999999999994 48
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
||.|++||+.... ......+.+|...|.+++|+| +.+|++++.||.|++||+.+++.+....
T Consensus 326 dg~i~v~~~~~~~-------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 326 DNNLSIWSYSSSG-------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TCEEEEEEEETTE-------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCcEEEEecCCcc-------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999998853 234455778999999999999 9999999999999999999998776543
No 67
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=286.01 Aligned_cols=276 Identities=20% Similarity=0.252 Sum_probs=231.9
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeee---ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
+.+++ |++++ +||++ .| ++|+|||+.+++.... ..|...|++++|+|++++|++|+.||.|++||+++++.+
T Consensus 28 ~~~l~--WS~~~-~lAvg-~D-~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVD--WSSGN-VLAVA-LD-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEE--ECTTS-EEEEE-ET-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEE--ECCCC-EEEEE-eC-CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence 45677 99886 56654 45 9999999998876533 246778999999999999999999999999999999999
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
..+.+|...+.++.+. +..+++++.++.+++|+... ....+..+.+|...+..+.+.+++ ..++++
T Consensus 103 ~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~ 168 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASG 168 (318)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEE
T ss_pred EEecCccceEEEeecC--CCEEEEEecCCceEeeecCC----------CceeEEEEcCccCceEEEEEcCCC--CEEEEE
Confidence 9999999988876664 67899999999999999865 334566788999999999999988 899999
Q ss_pred eCCCcEEEEecCCCceeee-----eecCcceeEEEECCCCCEE---EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc
Q 014475 196 SEDRTCKVWSLLKGRLLRN-----IVFPSVIDAIALDPAEHVF---YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (424)
Q Consensus 196 ~~d~~v~iwd~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (424)
+.|+.|++||+++++.... ..+...+.+++++|.+..+ ++++.++.|++||.+... ......
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~ 238 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVD 238 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------cccccc
Confidence 9999999999988764322 2266789999999976543 356678999999998853 233445
Q ss_pred cCcCeEEEEecC-CCEEEEe--CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 268 HSKAVTCLAYST-GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 268 ~~~~i~~~~~~~-~~~l~t~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+...+..+.|+| ++.++++ +.|+.|++||+++++++.++.+|.++|++++|+|++++|++|+.||+|++||+....
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 778899999999 7766654 479999999999999999999999999999999999999999999999999987543
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.4e-39 Score=295.98 Aligned_cols=293 Identities=18% Similarity=0.282 Sum_probs=239.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
++||+|. |++|+|||..+|+....+..+ .|...|.+++ |+|+|++|++++.| |.|++||+.+++.... ..|..
T Consensus 117 n~lAvgl--d~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~--fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~ 190 (420)
T 4gga_A 117 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA 190 (420)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCcEEEEE--ECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCC
Confidence 4677766 899999999999998877643 4667899999 99999999999998 9999999998876543 55788
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..++.
T Consensus 191 ~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~----- 263 (420)
T 4gga_A 191 RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE----- 263 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS-----
T ss_pred ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc-----
Confidence 88888774 689999999999999998765 4567788999999999999999999999999999999997642
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEE--EeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS--ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS- 237 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 237 (424)
.....+.....|...|.+++|+|.+. ..+++ |+.|++|++||+.++++...+.....+.++.|+|+++.+++++
T Consensus 264 --~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 264 --GGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp --SCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred --ccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 12234556778999999999999875 55554 4579999999999999999999889999999999999988765
Q ss_pred -CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475 238 -RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (424)
Q Consensus 238 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (424)
.|+.|++||+++. +++..+.+|...|++++|+| +.+|+||+.|++|+|||+.+..+.+....+...+..
T Consensus 341 ~~d~~I~iwd~~~~---------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 341 FAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp TTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred cCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 7899999999886 66888999999999999999 999999999999999999887777766666555444
Q ss_pred EEEEe
Q 014475 316 ILVVR 320 (424)
Q Consensus 316 l~~s~ 320 (424)
..+..
T Consensus 412 ~s~~~ 416 (420)
T 4gga_A 412 SSLIH 416 (420)
T ss_dssp -----
T ss_pred cccCC
Confidence 44443
No 69
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-38 Score=296.13 Aligned_cols=297 Identities=17% Similarity=0.264 Sum_probs=252.1
Q ss_pred eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
....+.+|...+ +.++. ++++++++++.| |.|++||+.+++.... ..|.++|.+++|+|++ ++++|+.||.
T Consensus 113 ~~~~l~~h~~~v--~~~~~----~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHMTSV--ITCLQ----FEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCSSSC--EEEEE----EETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCCCCc--EEEEE----ECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 445666654332 45544 467899999988 9999999998876644 4589999999999988 8999999999
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEc--cCCcEEEEeeCCCcEEEEeCCcccchhcc------------cccccceEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECES------------QRASHLYLH 169 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~~~ 169 (424)
|++||+++++.+..+.+|...|.+++|+ ++++++++++.||.|++||+++....... .........
T Consensus 185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred EEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 9999999999999999999999999998 57899999999999999999875432111 011122356
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
.+.+|...+.++ ++++ +.+++++.|+.|++||+++++.+..+. |...+.+++|+|+++++++|+.||.|++||++
T Consensus 265 ~~~~~~~~v~~~--~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 265 VLRGHMASVRTV--SGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EECCCSSCEEEE--EEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EccCccceEEEE--cCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 778899988877 5666 799999999999999999999988887 88999999999999999999999999999998
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
++ +.+..+.+|...|.+++++ +++|++++.||.|++||+++++...... +...+..++|+|++++|+++
T Consensus 341 ~~---------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 341 NG---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSG 409 (464)
T ss_dssp TT---------EEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEE
T ss_pred CC---------cEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEe
Confidence 86 6788889999999999998 6899999999999999999988777665 67788999999999999999
Q ss_pred cCCCceeeccCCCCCCC
Q 014475 329 SFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 329 ~~d~~i~iw~~~~~~~~ 345 (424)
+ ||.|++|++.++++.
T Consensus 410 ~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 410 S-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp E-TTEEEEEETTTCCEE
T ss_pred c-CCeEEEEECCCCcEE
Confidence 8 899999999987654
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.9e-39 Score=290.44 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=239.9
Q ss_pred CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEE
Q 014475 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYM 106 (424)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~i 106 (424)
...|...|.+++ |+|+++++++++.+ |.|++|++.++. ......|...|.+++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~h~~~v~~~~--~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 7 EQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp SSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ccCCCCcEEEEE--EcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 346778899999 99999999999988 999999998877 555667899999999999999 9999999999999
Q ss_pred EEc-cCcceeeeecc--ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 107 WEV-ASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 107 wd~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
||+ .+++. ..+.+ |...|.+++|+| ++++++++.|+.|++||+++....... .....+..+. |...+.+++|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA--VKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE--EEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc--ccCCeeeEEe-eCCceEEEEe
Confidence 999 77754 67778 999999999999 999999999999999998541100000 0012223334 8889999999
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCC-Ccee---eeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLK-GRLL---RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
+++ . +++++.|+.|++||+++ +... ....+...+.+++|+| +++++++++.||.+++|+++.......
T Consensus 159 ~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--- 231 (342)
T 1yfq_A 159 NSS---R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN--- 231 (342)
T ss_dssp CSS---E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT---
T ss_pred cCC---c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc---
Confidence 865 3 99999999999999988 5432 2223778899999999 999999999999999999987610000
Q ss_pred ceeeeeecccC---------cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeee
Q 014475 259 MHIIGSLSDHS---------KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 259 ~~~~~~~~~~~---------~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~ 327 (424)
......+..|. ..|.+++|+| +++|++++.||.|++||+.+++++..+..| .++|.+++ |++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 02334455554 4999999999 999999999999999999999999999998 99999999 99999999
Q ss_pred ccCCCc-eeeccC
Q 014475 328 GSFSNP-HTSSRR 339 (424)
Q Consensus 328 ~~~d~~-i~iw~~ 339 (424)
++.||. .+.+..
T Consensus 310 ~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 310 ATSDDTFKTNAAI 322 (342)
T ss_dssp EEECTHHHHCSSS
T ss_pred EecCCcccccccc
Confidence 999999 777775
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.7e-40 Score=297.03 Aligned_cols=282 Identities=11% Similarity=0.079 Sum_probs=219.7
Q ss_pred CceEEecceeecCCCccccCCCC------ceeEEEEECCCCcee-----------eeecCCCCeeEEEECCCCCEEEEe-
Q 014475 37 HGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSHGTYIAGG- 98 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~~~- 98 (424)
-+|.+++ |+|++++|++||.+ ++.|++|+++..... ....+...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~--fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAK--FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SCEEEEE--EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEE--EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 3589999 99999999998653 146999998755421 112356678887764 4566654
Q ss_pred ----------cCCCcEEEEEccCcceeee---------eccccCCeEEEEEccCCcEEEEe--eCCCcEEEEeCCcccch
Q 014475 99 ----------GQSGDIYMWEVASGRLLKK---------WHAHYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 99 ----------~~dg~v~iwd~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~ 157 (424)
+.|+.+++|++.+...... ...+...+.+++|+|||++++++ +.|++|++||++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--- 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--- 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---
Confidence 4578899999876532211 12344568999999999997654 47899999999652
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEE
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~ 234 (424)
..+..+. |...|.+++|+|++ +++++++.+ .+++|+..+++.+.... +...+.+++|+|++..++
T Consensus 168 --------~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 168 --------TEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp --------EEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred --------cEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 2334443 77889999999998 888888855 56677777776554332 677899999999999999
Q ss_pred EEeCCC----cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE-ec
Q 014475 235 AGSRDG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RL 308 (424)
Q Consensus 235 ~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~ 308 (424)
+++.++ .+++|++...... ......+.+|..+|++++|+| +++||+|+.|++|+|||+++++++..+ .+
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred EEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 998887 5788888765311 122456778999999999999 999999999999999999999999986 68
Q ss_pred cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
|.++|++++|+|||++||+||.|++|++|+++..
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999998643
No 72
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8e-40 Score=290.52 Aligned_cols=250 Identities=18% Similarity=0.166 Sum_probs=208.7
Q ss_pred eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeC
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~ 151 (424)
...|.++|++++|+|+|++||+|+.|++|++||++++. .+..+.+|...|.+++|+| ++++|++|+.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 34689999999999999999999999999999998774 4677899999999999986 4889999999999999999
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee---eeee-cCcceeEEEEC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV-FPSVIDAIALD 227 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~-~~~~i~~~~~~ 227 (424)
+++ .......+.+|...|.+++|+|+..+.+|++++.|+.|++||++.+... ..+. |...+.+++|+
T Consensus 89 ~~~---------~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 89 ENG---------TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp SSS---------CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCC---------cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 652 2234566788999999999999844489999999999999999876422 2222 67789999999
Q ss_pred CC-----------------CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C----CEEEE
Q 014475 228 PA-----------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLIS 285 (424)
Q Consensus 228 ~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t 285 (424)
|+ +.+|++|+.|+.|++||++.... ......+.+|...|.+++|+| + .+|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc------cceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 97 47899999999999999975321 245667889999999999999 5 78999
Q ss_pred eCCCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 286 GSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++.|++|++||+.+.. ....+..|.+.|.+++|+|++++|++++.|+.|++|+..
T Consensus 234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999988631 234456789999999999999999999999999999975
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=287.42 Aligned_cols=275 Identities=19% Similarity=0.242 Sum_probs=245.0
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~ 82 (424)
.+||+++ .||.|+|||+.+++.+..+..| ...|.+++ |+|+++++++++.| |.|++||+.+++......+..+
T Consensus 45 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~ 117 (369)
T 3zwl_B 45 DLLFSCS-KDSSASVWYSLNGERLGTLDGH---TGTIWSID--VDCFTKYCVTGSAD-YSIKLWDVSNGQCVATWKSPVP 117 (369)
T ss_dssp CEEEEEE-SSSCEEEEETTTCCEEEEECCC---SSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEe-CCCEEEEEeCCCchhhhhhhhc---CCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEeecCCC
Confidence 4689999 9999999999999999888765 46688888 99999999999987 9999999999888777779999
Q ss_pred eeEEEECCCCCEEEEecCC-----CcEEEEEccCcc-----------eeeeeccccC--CeEEEEEccCCcEEEEeeCCC
Q 014475 83 IKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR-----------LLKKWHAHYR--AVTCLVFSEDGSFLISGSEDG 144 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~-----------~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg 144 (424)
|.+++|+|+++++++++.+ |.|++||+.++. ....+..|.. .+.+++|+|++++|++++.||
T Consensus 118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 197 (369)
T 3zwl_B 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197 (369)
T ss_dssp EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999998 999999998764 2334445555 899999999999999999999
Q ss_pred cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEE
Q 014475 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI 224 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~ 224 (424)
.|++||+++ .......+..|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+.+...+..+
T Consensus 198 ~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 198 KISKYDVSN----------NYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp EEEEEETTT----------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEEEECCC----------CcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence 999999954 134567788899999999999988 89999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCC--------------cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC
Q 014475 225 ALDPAEHVFYAGSRDG--------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (424)
Q Consensus 225 ~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d 289 (424)
+|+|+++++++++.++ .+++||.... ..+..+.+|...|++++|+| +++|++++.|
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 9999999999999988 8999999886 56778889999999999999 9999999999
Q ss_pred CcEEEEeCCCCcEEEE
Q 014475 290 GMVRVWDPITHNIVRM 305 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~ 305 (424)
|.|++|+++++.....
T Consensus 337 g~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDFK 352 (369)
T ss_dssp SEEEEEEECHHHHTCC
T ss_pred CeEEEEECccccchhH
Confidence 9999999987654433
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-38 Score=319.05 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=258.7
Q ss_pred eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
..+.+.+| ...|.+++ |+|+++++++++.+ |.|++||+.+++.... ..|..+|.+++|+|++++|++|+.||.
T Consensus 5 ~~~~~~~h---~~~v~~i~--~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 5 IKKTFSNR---SDRVKGID--FHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp CEEEEEEE---CSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred cceeeecC---CCceEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 34555554 46789999 99999999999987 9999999988766543 458999999999999999999999999
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++ .......+.+|...|.+++|
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----------TSEEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----------CceEEEEEcCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999954 22456677889999999999
Q ss_pred EE-cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 184 GY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 184 ~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
+| ++ ..+++++.||.|++||+.+++....+. +...+.+++|+| ++.++++++.||.|++||++++
T Consensus 149 ~p~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------- 218 (814)
T 3mkq_A 149 NPKDP--STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-------- 218 (814)
T ss_dssp ETTEE--EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT--------
T ss_pred EcCCC--CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------
Confidence 99 66 899999999999999999888777766 348899999999 9999999999999999999886
Q ss_pred ceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceee
Q 014475 259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTS 336 (424)
Q Consensus 259 ~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~i 336 (424)
..+..+.+|...|.+++|+| ++++++++.||.|++||+.+++.+..+..|...+.+++|+|++..+ ++++.++.+.+
T Consensus 219 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 219 -SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp -EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred -cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 56778888999999999999 9999999999999999999999999999999999999999998743 55556777888
Q ss_pred ccCCCCC
Q 014475 337 SRRHGSQ 343 (424)
Q Consensus 337 w~~~~~~ 343 (424)
|++....
T Consensus 298 ~~~~~~~ 304 (814)
T 3mkq_A 298 LSLGNDE 304 (814)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 8876544
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.3e-38 Score=294.06 Aligned_cols=282 Identities=19% Similarity=0.332 Sum_probs=243.6
Q ss_pred EeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEE
Q 014475 28 RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (424)
Q Consensus 28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 106 (424)
.+..+..+...|.++. ++++++++++.+ |.|++||..+++.... ..|...|.+++| ++++|++|+.||.|++
T Consensus 125 ~~~~~~~~~~~v~~~~----~d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEecccCCCCcEEEEE----ECCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 3455666777888866 489999999988 9999999998876544 468899999999 7889999999999999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||++++. .......+.+|...|.++++ +
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPT--------DITLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSS--------CCEEEEEECCCSSCEEEEEE--E
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCC--------CceeeeEecCCCCcEEEEEe--C
Confidence 9999999999999999999999997 4589999999999999997632 12233567889999999998 4
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
+ +.+++++.||.|++||+++++.+..+. +...+.++++ ++.++++|+.||.|++||++++ ..+..+
T Consensus 266 ~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~ 332 (435)
T 1p22_A 266 D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVL 332 (435)
T ss_dssp T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEE
T ss_pred C--CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEE
Confidence 4 799999999999999999999998887 7889999998 5789999999999999999986 567788
Q ss_pred cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc---------EEEEEeccCCCeeEEEEEecCceeeeccCCCceee
Q 014475 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (424)
Q Consensus 266 ~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i 336 (424)
.+|...|.+++|+ +.+|++|+.||.|++||+.+++ ++..+.+|.++|.+++| ++.+|++++.||.|++
T Consensus 333 ~~h~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 333 EGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp CCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred eCCcCcEEEEEec-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 8999999999994 7899999999999999998776 89999999999999999 7889999999999999
Q ss_pred ccCCCCCC
Q 014475 337 SRRHGSQL 344 (424)
Q Consensus 337 w~~~~~~~ 344 (424)
|++.+...
T Consensus 410 wd~~~~~~ 417 (435)
T 1p22_A 410 WDFLNDPA 417 (435)
T ss_dssp EC------
T ss_pred EECCCCCC
Confidence 99986643
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.9e-38 Score=317.75 Aligned_cols=311 Identities=16% Similarity=0.198 Sum_probs=258.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
.+||+++ .||.|+|||+.+++.+..+..|. ..|.+++ |+|+++++++++.+ |.|++||+.+++.... ..|.+
T Consensus 26 ~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~--~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~ 98 (814)
T 3mkq_A 26 PWVLTTL-YSGRVEIWNYETQVEVRSIQVTE---TPVRAGK--FIARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPD 98 (814)
T ss_dssp SEEEEEE-TTSEEEEEETTTTEEEEEEECCS---SCEEEEE--EEGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEEe-CCCEEEEEECCCCceEEEEecCC---CcEEEEE--EeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCC
Confidence 3688999 99999999999999999888654 6688888 99999999999997 9999999998876544 55899
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.|.+++|+|++++|++++.||.|++||++++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.++.
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---- 174 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---- 174 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----
Confidence 9999999999999999999999999999987 66778889999999999999 88999999999999999996521
Q ss_pred ccccccceEEee-cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475 160 SQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (424)
....+ ..+...+.+++|+|.+++..+++++.||.|++||+++++.+..+. |...+.+++|+|++.++++++
T Consensus 175 -------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 175 -------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp -------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred -------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 12233 344589999999993333899999999999999999999888887 788999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcEEEE----------
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRM---------- 305 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~~~~---------- 305 (424)
.||.|++||+.+. .....+..|...+.+++|+| +. .+++++.++.+.+|++..+.....
T Consensus 248 ~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (814)
T 3mkq_A 248 EDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWS 318 (814)
T ss_dssp TTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEE
T ss_pred CCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEE
Confidence 9999999999886 56677888999999999999 54 234444566788888764322111
Q ss_pred ---------------------------------EeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 306 ---------------------------------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 306 ---------------------------------~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+..+...+.+++|+|+|++|++++ |+.+.+|++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 319 GGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 122344578888888888888877 78888888653
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8e-39 Score=290.14 Aligned_cols=282 Identities=14% Similarity=0.185 Sum_probs=232.2
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCC--CCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeee-e
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--PPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVK-S 77 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~-~ 77 (424)
+++++ .++.|+|||+.+++.+..+..+.. +...+.+++ |+|+ ++++++++.+ |.|++||+.+++.... .
T Consensus 37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYV 112 (366)
T ss_dssp EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEEEETT-CEEEEECTTTCCEEEEEE
T ss_pred EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEEecCC-CEEEEEEchhceEeeeec
Confidence 44444 477999999999988887775543 567799999 9999 6689999887 9999999998876544 4
Q ss_pred cCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeee---ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 78 LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 78 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.|..+|.+++|+| ++++|++|+.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 5899999999999 9999999999999999999999988887 78999999999999999999999999999999987
Q ss_pred ccchhcccc-----------------cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-----
Q 014475 154 VFEECESQR-----------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL----- 211 (424)
Q Consensus 154 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~----- 211 (424)
+........ ...........|...|.+++|+ + +++++++.|+.|++||+++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G--DLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T--TEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C--CEEEEEecCCEEEEEeCCCcccccccc
Confidence 543221110 0111233445699999999998 4 7999999999999999987654
Q ss_pred ---------eeeee-cCcceeEEEECCC--CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEe
Q 014475 212 ---------LRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAY 277 (424)
Q Consensus 212 ---------~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~ 277 (424)
+..+. +...+.+++|+|+ +++|++++.||.|++||++.+.... .....+..| ...|++++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~ 343 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSF 343 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEE
T ss_pred ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEe
Confidence 44444 6778999999999 9999999999999999999864221 234466666 799999999
Q ss_pred cC-CCEEEEeCCCCcEEEEeCCC
Q 014475 278 ST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 278 ~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
+| +++|++++.||.|++||+.+
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCeEEEEeCCCEEEEEEecC
Confidence 99 99999999999999999853
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.5e-39 Score=294.28 Aligned_cols=268 Identities=17% Similarity=0.239 Sum_probs=231.2
Q ss_pred EEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecC----C---CccccCCCCceeEEEEECCC
Q 014475 4 LIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLAS----S---QLREQPSASSGSILYWSWSK 70 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~----~---~~l~~~~~~~g~i~vwd~~~ 70 (424)
+||+++ .||+|+|||+.+++ .+..+..| ...|.+++ |+|+ + +++++++.+ |.|++|++.+
T Consensus 28 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~~g~~~~~l~s~~~d-g~i~iw~~~~ 100 (397)
T 1sq9_A 28 FTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFVH---KSGLHHVD--VLQAIERDAFELCLVATTSFS-GDLLFYRITR 100 (397)
T ss_dssp EEEEEE-TTSEEEEEESBCCTTCCGGGGEEEEECC---TTCEEEEE--EEEEEETTTEEEEEEEEEETT-SCEEEEEEEE
T ss_pred eEEEEc-CCCEEEEEECCCcccccCCCcceEEecC---CCcEEEEE--EecccccCCccccEEEEEcCC-CCEEEEEccC
Confidence 689999 99999999999988 67777754 46688888 9999 9 999999987 9999999987
Q ss_pred Cc------eeeeecC-----CCCeeEEEEC----CCCCE-EEEecCCCcEEEEEccC------cceee-----ee-----
Q 014475 71 PQ------VEVKSLP-----AEPIKPIAAN----SHGTY-IAGGGQSGDIYMWEVAS------GRLLK-----KW----- 118 (424)
Q Consensus 71 ~~------~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~----- 118 (424)
++ ......| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (397)
T 1sq9_A 101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 180 (397)
T ss_dssp CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence 76 3344455 4899999999 99999 99999999999999998 77766 66
Q ss_pred --ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC---C---cCceeEEEEEEcCcee
Q 014475 119 --HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG---H---TLRITDIVIGYGGVSA 190 (424)
Q Consensus 119 --~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~ 190 (424)
..|...|.+++|+|++ ++++++.||.|++||+++ ...+..+.. | ...|.+++|+|++ .
T Consensus 181 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~ 246 (397)
T 1sq9_A 181 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRSVKFSPQG--S 246 (397)
T ss_dssp CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEEEEECSST--T
T ss_pred cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccceEEECCCC--C
Confidence 4488999999999999 999999999999999965 345566677 8 9999999999998 8
Q ss_pred EEEEEeCC---CcEEEEecCCCceeeeee--------------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 014475 191 TIVSASED---RTCKVWSLLKGRLLRNIV--------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (424)
Q Consensus 191 ~l~~~~~d---~~v~iwd~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (424)
+|++++.| +.|++||+++++.+..+. +...|.+++|+|++++|++++.||.|++||++..
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--- 323 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--- 323 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---
Confidence 99999999 999999999998888776 6789999999999999999999999999999886
Q ss_pred CCCcCceeeeeec------cc---------------CcCeEEEEecC-C----------CEEEEeCCCCcEEEEeCCCCc
Q 014475 254 TSSYGMHIIGSLS------DH---------------SKAVTCLAYST-G----------DLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 254 ~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~-~----------~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+.+..+. +| ...|++++|+| + ++|++++.||.|++||+++|+
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 5566666 67 99999999999 6 799999999999999998763
No 79
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-38 Score=283.78 Aligned_cols=278 Identities=22% Similarity=0.317 Sum_probs=228.9
Q ss_pred EEEeecCCCCCceEEEeCCCCc-----eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-
Q 014475 3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK- 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~- 76 (424)
.+||||+ .||+|+|||+.+++ +...++ +|...|.+++ |+|+++++++++.| +.|++|+.........
T Consensus 52 ~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~---~h~~~V~~~~--~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~ 124 (340)
T 4aow_A 52 DMILSAS-RDKTIIMWKLTRDETNYGIPQRALR---GHSHFVSDVV--ISSDGQFALSGSWD-GTLRLWDLTTGTTTRRF 124 (340)
T ss_dssp TEEEEEE-TTSCEEEEEECCSSSCSEEEEEEEC---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred CEEEEEc-CCCeEEEEECCCCCcccceeeEEEe---CCCCCEEEEE--ECCCCCEEEEEccc-ccceEEeecccceeeee
Confidence 3799999 99999999987654 334444 4567899999 99999999999998 9999999988766544
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-eeeeccccCCeEEEEEccCC--cEEEEeeCCCcEEEEeCCc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~~~ 153 (424)
..+...+..+.+++++++|++++.|+.+++||+..... .....+|...+.+++|++++ .++++++.|+.|++||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence 45678899999999999999999999999999876544 34557799999999998754 5788999999999999954
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
......+.+|...|++++|+|++ ++|++++.|+.|++||+++.+.+..+.+...+.+++|+|++.++
T Consensus 205 -----------~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 271 (340)
T 4aow_A 205 -----------CKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL 271 (340)
T ss_dssp -----------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred -----------CceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence 44567788999999999999998 89999999999999999999999999988999999999987655
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+++.|+.|++||++..................+|...|++++|+| +++|++|+.||.|+|||+++|+
T Consensus 272 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 272 -CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred -eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 566799999999987632211111122234457899999999999 9999999999999999999885
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-38 Score=289.41 Aligned_cols=289 Identities=13% Similarity=0.072 Sum_probs=234.4
Q ss_pred EEEeecCCCCCceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee---ee
Q 014475 3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KS 77 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~---~~ 77 (424)
.+||+++ .||.|++||+.+++ .+..+..| ...|.+++ |+|+++++++++.+ |.|++||+.+++... ..
T Consensus 21 ~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~h---~~~v~~~~--~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 21 TQIAICP-NNHEVHIYEKSGNKWVQVHELKEH---NGQVTGVD--WAPDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEEC-SSSEEEEEEEETTEEEEEEEEECC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEe-CCCEEEEEeCCCCcEEeeeeecCC---CCcccEEE--EeCCCCEEEEEcCC-CeEEEEECCCCeeeeeEEee
Confidence 3688998 89999999999887 77777654 46788888 99999999999987 999999998876432 24
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce----eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
.|...|.+++|+|++++|++++.||.|++||++.+.. ......|...|.+++|+|++++|++++.||.|++||++.
T Consensus 94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 5788999999999999999999999999999988763 233367899999999999999999999999999999753
Q ss_pred ccchhc-------ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475 154 VFEECE-------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (424)
Q Consensus 154 ~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (424)
...... ........+..+..|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+. +...+.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 251 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT 251 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence 211000 0012345667778899999999999998 899999999999999999999988887 677999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCC--CCCCC--C---------------------CcCceee------eee-cccCcCeE
Q 014475 226 LDPAEHVFYAGSRDGSIYIAALNA--ESPST--S---------------------SYGMHII------GSL-SDHSKAVT 273 (424)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~---------------------~~~~~~~------~~~-~~~~~~i~ 273 (424)
|+|++.+++++ .|+.|++|+++. +.... . ....... ..+ .+|...|+
T Consensus 252 ~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 252 FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 99999988887 899999999987 31000 0 0000111 223 48999999
Q ss_pred EEEecC--C---CEEEEeCCCCcEEEEeCCCCc
Q 014475 274 CLAYST--G---DLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 274 ~~~~~~--~---~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+++|.+ + .+|++|+.||.|++||+++++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 999775 5 899999999999999987754
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.7e-38 Score=307.39 Aligned_cols=267 Identities=24% Similarity=0.348 Sum_probs=223.4
Q ss_pred EEEeecCCCCCceEEEeCCCC-----ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee-e
Q 014475 3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-K 76 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~-~ 76 (424)
.+|+||+ .||+|+|||+.++ .....+.+ |...|.+++ |+|+++++++++.| |+|++||+.++.... .
T Consensus 396 ~~l~s~s-~D~~i~~W~~~~~~~~~~~~~~~~~~---h~~~v~~v~--~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~ 468 (694)
T 3dm0_A 396 DIIVSAS-RDKSIILWKLTKDDKAYGVAQRRLTG---HSHFVEDVV--LSSDGQFALSGSWD-GELRLWDLAAGVSTRRF 468 (694)
T ss_dssp SEEEEEE-TTSEEEEEECCCSTTCSCEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred CEEEEEe-CCCcEEEEEccCCCcccccccceecC---CCCcEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCcceeEE
Confidence 4799999 9999999999764 33445554 456788888 99999999999998 999999999876553 3
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee---eccccCCeEEEEEccCC--cEEEEeeCCCcEEEEeC
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSL 151 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~l~s~~~dg~i~iwd~ 151 (424)
..|...|.+++|+|++++|++|+.|++|++||......... ..+|...|.+++|+|++ ..+++++.|+.|++||+
T Consensus 469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 56899999999999999999999999999999865433322 24688999999999976 58999999999999999
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
++ ......+.+|...|++++|+|++ .+|++++.||.|++||+++++.+..+.+...+.+++|+|++.
T Consensus 549 ~~-----------~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 549 SN-----------CKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp TT-----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred CC-----------CcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 54 34567788999999999999998 899999999999999999999998888888999999999998
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-------------------ccCcCeEEEEecC-CCEEEEeCCCCc
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------------------DHSKAVTCLAYST-GDLLISGSEDGM 291 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~~i~~~~~~~-~~~l~t~~~dg~ 291 (424)
++++++ ++.|++||+++... +..+. .+...+++++|+| +++|++|+.||.
T Consensus 616 ~l~~~~-~~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 616 WLCAAT-EHGIKIWDLESKSI---------VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEEEE-TTEEEEEETTTTEE---------EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEc-CCCEEEEECCCCCC---------hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 887766 55699999988632 22221 1223478999999 999999999999
Q ss_pred EEEEeCCC
Q 014475 292 VRVWDPIT 299 (424)
Q Consensus 292 i~iwd~~~ 299 (424)
|++||+..
T Consensus 686 i~iW~i~~ 693 (694)
T 3dm0_A 686 IRVWGIGR 693 (694)
T ss_dssp EEEEEC--
T ss_pred EEEEeccC
Confidence 99999853
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.2e-38 Score=275.09 Aligned_cols=249 Identities=15% Similarity=0.192 Sum_probs=205.3
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd 108 (424)
+|...|.+++ |+|+|++|++++.| ++|++||+.... ......|.++|.+++|+|+ +++|++|+.||+|++||
T Consensus 7 ~h~~~V~~~~--~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAV--MDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CCcCceEEEE--ECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4567899999 99999999999998 999999997532 2344578999999999874 89999999999999999
Q ss_pred ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+++++ .+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++.. ......+.+|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~---------~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS---------CBCCEEEECCSSCEEEEEEC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC---------ceeeeeeecccCccceEeec
Confidence 98874 55677889999999999997 8899999999999999996521 11134567899999999999
Q ss_pred EcC-----------ceeEEEEEeCCCcEEEEecCCCc----eeeeee-cCcceeEEEECCCC---CEEEEEeCCCcEEEE
Q 014475 185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPAE---HVFYAGSRDGSIYIA 245 (424)
Q Consensus 185 ~~~-----------~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~ 245 (424)
|+. .+..|++++.|++|++||+++++ ....+. |...|.+++|+|++ .+|++++.|+.|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 863 12689999999999999998765 444554 88899999999984 899999999999999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|++...... .........|...|.+++|+| +++|++++.||.|++|+..
T Consensus 235 d~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 235 TQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 998743110 011111246788999999999 9999999999999999976
No 83
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.3e-38 Score=282.53 Aligned_cols=263 Identities=14% Similarity=0.193 Sum_probs=223.8
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc--CCcEEEEeeCCCcEEE
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI 148 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~s~~~dg~i~i 148 (424)
....|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44578999999999999999999999999999999876 45667788999999999999 6999999999999999
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------------
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------------ 216 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------ 216 (424)
||++++...... ........+..|...|.+++|+|+..+.++++++.||.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 86 WEEDPDQEECSG--RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEECTTSCTTSS--CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EecCCCcccccc--cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 999764321111 112456778899999999999998212899999999999999999887654432
Q ss_pred --cCcceeEEEECCC---CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C----CEEEEe
Q 014475 217 --FPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG 286 (424)
Q Consensus 217 --~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~l~t~ 286 (424)
+...+.+++|+|+ +..+++++.++.+.+|+..... ...+..+.+|...|++++|+| + ++|++|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence 4567899999997 9999999999999888877653 245677888999999999999 6 799999
Q ss_pred CCCCcEEEEeCCCC----------------------------------------------cEEEEEeccCCCeeEEEEEe
Q 014475 287 SEDGMVRVWDPITH----------------------------------------------NIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 287 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~ 320 (424)
+.||.|++||++++ +++..+.+|.++|++++|+|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 99999999999875 67778889999999999999
Q ss_pred cCceeeeccCCCceeeccCCCCCCCC
Q 014475 321 RPLYLNLGSFSNPHTSSRRHGSQLPP 346 (424)
Q Consensus 321 ~~~~l~~~~~d~~i~iw~~~~~~~~~ 346 (424)
++++|++++.||.|++|++...+...
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred CCCEEEEecCCCcEEEEecCcCcchh
Confidence 99999999999999999998765433
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=293.57 Aligned_cols=286 Identities=13% Similarity=0.121 Sum_probs=226.5
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCc------------eeeeecCC------------CCeeEEEECC
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------------VEVKSLPA------------EPIKPIAANS 90 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~------------~~~~~~~~------------~~v~~~~~s~ 90 (424)
+...|.+++ |+|+|++|++++.| |.|++|++.+++ ......|. ++|.+++|+|
T Consensus 27 ~~~~V~~v~--~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 27 EADIISTVE--FNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GGGSEEEEE--ECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 457899999 99999999999998 999999998765 22334576 8899999999
Q ss_pred CC--CEEEEecCCCcEEEEEccCccee---------------------------------------ee-eccccCCeEEE
Q 014475 91 HG--TYIAGGGQSGDIYMWEVASGRLL---------------------------------------KK-WHAHYRAVTCL 128 (424)
Q Consensus 91 ~~--~~l~~~~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~ 128 (424)
++ .+|++++.||.|++||+.++... .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 89999999999999999775432 12 36799999999
Q ss_pred EEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (424)
Q Consensus 129 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 208 (424)
+|+|++++|++| .||.|++||+++.......... ....+.+|...|.+++|+|++. .+|++++.||.|++||+++
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI---KPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC---CCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec---ccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcC
Confidence 999999999998 7999999999742111000000 0013568999999999999863 6899999999999999999
Q ss_pred Cce----eeeee-cCc------------ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475 209 GRL----LRNIV-FPS------------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (424)
Q Consensus 209 ~~~----~~~~~-~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (424)
++. ...+. +.. .|.+++|+|++++|++++. +.|++||++... .++..+.+|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--------~~~~~~~~~~~~ 329 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--------RPVETYQVHEYL 329 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--------SCSCCEESCGGG
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--------cccceeeccccc
Confidence 886 55555 333 8999999999999999999 999999998732 345556666432
Q ss_pred ---------------eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---------------------------
Q 014475 272 ---------------VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------------------------- 308 (424)
Q Consensus 272 ---------------i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~--------------------------- 308 (424)
+..++|+| +.+|++|+.||.|++||+.+++.+. +..
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccc
Confidence 33489999 9999999999999999999988763 222
Q ss_pred ------cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 309 ------~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+...|..++|+|++.+||+++.++ +++|..
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 235788999999999999998876 666654
No 85
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=282.15 Aligned_cols=297 Identities=15% Similarity=0.186 Sum_probs=237.2
Q ss_pred EEeCCCCceEEEeeCCCCCCCceEEecceeecC---CCccccCCCCceeEEEEECCC-Ccee--eeecCCCCeeEEEECC
Q 014475 17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSK-PQVE--VKSLPAEPIKPIAANS 90 (424)
Q Consensus 17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~g~i~vwd~~~-~~~~--~~~~~~~~v~~~~~s~ 90 (424)
.|+....+.+..+ ..|...|.+++ |+|+ |+++++++.| |.|++||+.+ +... ....|..+|.+++|+|
T Consensus 23 ~~~~~~~~~~~~~---~~h~~~v~~~~--~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~ 96 (368)
T 3mmy_A 23 TDNHNPMKDIEVT---SSPDDSIGCLS--FSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD 96 (368)
T ss_dssp CCSSCTTCCEECS---SCCSSCEEEEE--ECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECT
T ss_pred cCCCCCcceeEec---cCCCCceEEEE--EcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECc
Confidence 3454555555444 45667899999 9999 5999999988 9999999987 4332 3456899999999999
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEE--ccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL 168 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 168 (424)
++++|++++.||.|++||+++++.+. +..|...|.+++| +|++++|++++.||.|++||++++ ..+
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~ 164 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NPM 164 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SCS
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cEE
Confidence 99999999999999999999888766 5569999999999 889999999999999999999662 233
Q ss_pred EeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCE----EEEEeCCCc
Q 014475 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHV----FYAGSRDGS 241 (424)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~ 241 (424)
..+..+. .+.++.+. . ..+++++.++.+.+||++......... ......++++.++... +++++.||.
T Consensus 165 ~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 165 MVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp EEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 4444443 44444444 4 578888899999999998765443332 3455666666555444 999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCc------------CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
|++||++..... .....+..|.. +|++++|+| +++|++++.||.|++||+++++++..+..
T Consensus 240 i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 240 VAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp EEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred EEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999886320 23344555554 799999999 99999999999999999999999999999
Q ss_pred cCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
|..+|++++|+|++++|++++.|+..+.|+....
T Consensus 314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred CCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 9999999999999999999999998777776543
No 86
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-37 Score=284.65 Aligned_cols=269 Identities=16% Similarity=0.241 Sum_probs=221.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeecC--
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP-- 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-- 79 (424)
.+||+|+ .||.|+|||+.+++....+.. .+|...|.+++ |+| +++++++++.| +.|++||+.+........+
T Consensus 87 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 87 TTVAVGS-KGGDIILWDYDVQNKTSFIQG-MGPGDAITGMK--FNQFNTNQLFVSSIR-GATTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp TEEEEEE-BTSCEEEEETTSTTCEEEECC-CSTTCBEEEEE--EETTEEEEEEEEETT-TEEEEEETTSCEEEEEECCCC
T ss_pred CEEEEEc-CCCeEEEEeCCCcccceeeec-CCcCCceeEEE--eCCCCCCEEEEEeCC-CEEEEEECCCCceEEEeccCC
Confidence 4799999 999999999999988877643 34668899999 999 78999999887 9999999997655444333
Q ss_pred -CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccch
Q 014475 80 -AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 80 -~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
...|.+++|+|++++|++|+.||.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++...
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD- 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-
Confidence 478999999999999999999999999998 6778888999999999999999998 999999999999999976321
Q ss_pred hcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee-cC-----------------
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP----------------- 218 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~----------------- 218 (424)
....+..+ +|...|.+++|+| ++ .+|++++.|+.|++||+++++....+. +.
T Consensus 240 ------~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 240 ------KNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp ------TTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred ------ccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 12334444 6999999999999 87 899999999999999999887766554 21
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~t~~~dg~i~iw 295 (424)
..+..++++|++++ +++.|+.|++||+.++ +.+..+.+ |...+..++|+| +.+|++|+ ||.|++|
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCC---------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 23344556666665 6678999999999886 45666665 567788889999 99999997 9999999
Q ss_pred eCCC
Q 014475 296 DPIT 299 (424)
Q Consensus 296 d~~~ 299 (424)
|+++
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9874
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=271.11 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=231.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----eeeeecC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLP 79 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~~~~~~ 79 (424)
+||+++ .||.|++||+.+++....+..| ...+.+++ |+|+++++++++.+ |.|++|++.... ......|
T Consensus 31 ~l~s~~-~dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~--~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 31 KVASVS-RDGTVRLWSKDDQWLGTVVYTG---QGFLNSVC--YDSEKELLLFGGKD-TMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp EEEEEE-TTSEEEEEEESSSEEEEEEEEC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEETTCCTTSCC-CEECCC
T ss_pred EEEEEE-cCCcEEEEECCCCEEEEEeecC---CccEEEEE--ECCCCCEEEEecCC-CeEEEEEeeecCCCCcccchhhc
Confidence 689999 9999999999999888888765 46788888 99999999999998 999999987643 2334568
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
..+|.+++| +++++++++.||.|++|| .++....+..|...+.++.|.| +++++++++.||.|++||...
T Consensus 104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----- 174 (313)
T 3odt_A 104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----- 174 (313)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----
T ss_pred ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----
Confidence 899999999 678999999999999999 6777888889999999999998 899999999999999999532
Q ss_pred cccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEE
Q 014475 159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (424)
....+.. |...+.+++|++++ . +++++.|+.|++||+++++.+..+. |...+.+++|+|++ .++++
T Consensus 175 --------~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 175 --------VIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp --------EEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred --------eEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence 3444555 89999999999997 5 9999999999999999999998887 88999999999999 58999
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
+.||.|++||++++ +....+..|...|.+++|+| +. +++++.||.|++||+++++.+....
T Consensus 243 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 243 GEDRTVRIWSKENG---------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ETTSEEEEECTTTC---------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ecCCEEEEEECCCC---------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 99999999999886 56777888999999999999 65 7779999999999999887665544
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=285.86 Aligned_cols=320 Identities=15% Similarity=0.136 Sum_probs=230.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCC----------CCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC----------ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKP 71 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~ 71 (424)
.+||+++ .||.|+|||+.+++....+... ..|...|.+++ |+| +++++++++.+ |.|++||+.++
T Consensus 57 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~ 132 (408)
T 4a11_B 57 RYMLSGG-SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ--WYPHDTGMFTSSSFD-KTLKVWDTNTL 132 (408)
T ss_dssp CEEEEEE-TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE--ECTTCTTCEEEEETT-SEEEEEETTTT
T ss_pred CEEEEEc-CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE--EccCCCcEEEEEeCC-CeEEEeeCCCC
Confidence 4789999 9999999999988766554311 24678899999 999 77788888887 99999999998
Q ss_pred ceeeeecCCCCeeEEEECCC---CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEE
Q 014475 72 QVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVR 147 (424)
Q Consensus 72 ~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~ 147 (424)
+......+...+.++.|+|. +.++++++.+|.|++||+++++.+..+..|...|.+++|+|+++ .+++++.||.|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 133 QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 88777778899999999984 45999999999999999999999999999999999999999988 589999999999
Q ss_pred EEeCCcccchhccc-----ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-----
Q 014475 148 IWSLLTVFEECESQ-----RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF----- 217 (424)
Q Consensus 148 iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----- 217 (424)
+||+++........ ............|...|.+++|+|++ .+|++++.||.|++||+++++.......
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCccceecccccccc
Confidence 99997643211110 01111122336789999999999988 8999999999999999998876554431
Q ss_pred -CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEE
Q 014475 218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iw 295 (424)
...+........+..+++++.++.|++||+.++ ..+..+.+|...|++++|+| +.+|++++.||.|++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 122223333345666777888999999999886 56778889999999999999 9999999999999999
Q ss_pred eCCCCcEEEEEeccCCCeeEEEEEe-cCceeeeccCCCceeeccCC
Q 014475 296 DPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d~~i~iw~~~ 340 (424)
|+++++++.....+... ..+.+ ....+.+.+.|+.+++|+.+
T Consensus 362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 362 VPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EECC------------------------------------------
T ss_pred eCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 99999887766543322 23333 33445677789999999865
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-37 Score=286.47 Aligned_cols=276 Identities=14% Similarity=0.175 Sum_probs=229.3
Q ss_pred eecCCCccccCCCCceeEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccCc-------
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG------- 112 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~------- 112 (424)
++|+...+++.+..+|.|++|++.... ......|.++|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~ 121 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence 777776666544434999999997542 223456899999999999 9999999999999999999988
Q ss_pred ceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCce
Q 014475 113 RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 189 (424)
+.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++ ...+..+ ..|...|.+++|+|++
T Consensus 122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDG-- 188 (402)
T ss_dssp SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTS--
T ss_pred CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCC--
Confidence 5678889999999999999998 6999999999999999965 3345666 7899999999999988
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeee-e-cCcc-eeEEEECCCCCEEEEE---eCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSV-IDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~-~-~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
..|++++.|+.|++||+++++.+..+ . +... +.+++|+|++.++++| +.|+.|++||++..... ...
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-------~~~ 261 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-------LSL 261 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-------SEE
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-------ceE
Confidence 89999999999999999999988887 3 5444 8999999999999999 78999999999886421 111
Q ss_pred eecccCcCeEEEEecC-CCEEE-EeCCCCcEEEEeCCCCcE-EEEEec--cCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 264 SLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
....|...+.+++|+| +++|+ +|+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .++.+++|+
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 2235778899999999 88775 566899999999999884 555544 4589999999999998876 466999999
Q ss_pred CCCCC
Q 014475 339 RHGSQ 343 (424)
Q Consensus 339 ~~~~~ 343 (424)
+.++.
T Consensus 340 l~~~~ 344 (402)
T 2aq5_A 340 LHERK 344 (402)
T ss_dssp EETTE
T ss_pred cCCCc
Confidence 98754
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-36 Score=283.98 Aligned_cols=283 Identities=17% Similarity=0.275 Sum_probs=245.9
Q ss_pred eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCc
Q 014475 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (424)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 103 (424)
....+.+|...+ +.+ +.++++++++++.| |.|++||+.+++.... ..|..+|.+++|+ ++++++|+.||.
T Consensus 110 ~~~~l~~h~~~v--~~~----~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 180 (445)
T 2ovr_B 110 SPKVLKGHDDHV--ITC----LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT 180 (445)
T ss_dssp CCEEEECSTTSC--EEE----EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred eeEEecccCCCc--EEE----EEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence 445566665432 344 55679999999987 9999999998876543 4688999999997 679999999999
Q ss_pred EEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
|++||+.+++.+..+.+|...|.++.|+ ++.+++|+.||.|++||+++ ...+..+.+|...|.++.+
T Consensus 181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-----------~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-----------GQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-----------CCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCcccEEEEEE
Confidence 9999999999999999999999999996 56899999999999999965 3456677889999999998
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceee
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
++ ..+++++.||.|++||+++++.+..+. +...+.++++ ++.++++++.||.|++||++++ +.+
T Consensus 248 --~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---------~~~ 312 (445)
T 2ovr_B 248 --DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---------NCI 312 (445)
T ss_dssp --CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---------CEE
T ss_pred --CC--CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---------CEE
Confidence 44 789999999999999999999888887 7889999999 8899999999999999999986 567
Q ss_pred eeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 263 GSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 263 ~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
..+.+|...+.++.++ ++++++|+.||.|++||+++++++..+.. |..+|.+++|+ +.+|++|+.||.|++|++
T Consensus 313 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 7788999999998876 68999999999999999999999999986 78899999995 679999999999999999
Q ss_pred CCCCCCCC
Q 014475 340 HGSQLPPP 347 (424)
Q Consensus 340 ~~~~~~~~ 347 (424)
.+++....
T Consensus 390 ~~~~~~~~ 397 (445)
T 2ovr_B 390 KTGEFIRN 397 (445)
T ss_dssp TTCCEEEE
T ss_pred CCCceeee
Confidence 98765443
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=268.63 Aligned_cols=275 Identities=18% Similarity=0.287 Sum_probs=232.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
++||+|. |++|+|||+++|+.++.++.+ .|...|.+++ |+|+++++++++.| |+|++||+++++.... ..|..
T Consensus 37 ~~lAvg~--D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~--~~~~~~~l~sgs~D-g~v~iw~~~~~~~~~~~~~h~~ 110 (318)
T 4ggc_A 37 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA 110 (318)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCeEEEEE--ECCCCCEEEEEECC-CcEEEeecCCceeEEEecCccc
Confidence 3577765 999999999999999888654 4667899999 99999999999998 9999999998876533 45677
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+.++.+.++++++++++.||.|++||++++..
T Consensus 111 ~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---- 184 (318)
T 4ggc_A 111 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG---- 184 (318)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT----
T ss_pred eEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc----
Confidence 7766554 5789999999999999998876 45567789999999999999999999999999999999976432
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCcee-EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe--
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-- 237 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 237 (424)
..........+...|.++.+.+.+..- .+++++.++.|++||.+.........+...+..++++|++..+++++
T Consensus 185 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 185 ---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp ---BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred ---cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence 222344566788899999999876422 23466788999999999999888888999999999999999888765
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
.|+.|++||++++ +++..+.+|...|++++|+| +++|++|+.||+|+|||+.+..
T Consensus 262 ~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 262 AQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7999999999986 66788999999999999999 9999999999999999997654
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=281.18 Aligned_cols=280 Identities=13% Similarity=0.199 Sum_probs=227.2
Q ss_pred EEEeecCCC---CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecC---CCccccCCCCceeEEEEECCCCc-e-e
Q 014475 3 LLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSKPQ-V-E 74 (424)
Q Consensus 3 ~~lat~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~g~i~vwd~~~~~-~-~ 74 (424)
.++++++ . ||.|+|||+.+++....... .|...|.+++ |+|+ ++++++++.+ |.|++||+.+++ . .
T Consensus 32 ~l~~~~s-~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~--~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 32 KFVTMGN-FARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGT--FGATSLQQRYLATGDFG-GNLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEEEC---CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEE--CTTCCTTTCCEEEEETT-SCEEEECTTSCSSCSE
T ss_pred eEEEecC-ccCCCcEEEEEeCCCCcccceeee--cccCcEEEEE--EcCCCCCCceEEEecCC-CeEEEEeCCCCCccEE
Confidence 5678887 7 99999999999887654432 2457789999 9999 6999999887 999999999776 3 3
Q ss_pred eeecCCCCeeEEE------ECCCCCEEEEecCCCcEEEEEccCcc-eeeeeccccC----CeEEEE----EccCCcEEEE
Q 014475 75 VKSLPAEPIKPIA------ANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYR----AVTCLV----FSEDGSFLIS 139 (424)
Q Consensus 75 ~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~----~i~~~~----~~~~~~~l~s 139 (424)
....|...|.+++ |+|++++|++++.||.|++||+++++ .+..+..|.+ .+.++. |+|+++++++
T Consensus 106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 185 (357)
T 3i2n_A 106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185 (357)
T ss_dssp EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence 4456889999995 57899999999999999999999887 6777766554 899998 6789999999
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE---cCceeEEEEEeCCCcEEEEecCCCceeeee-
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNI- 215 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~- 215 (424)
++.||.|++||++++. . .....|...|.+++|+| ++ ..+++++.||.|++||+++++....+
T Consensus 186 ~~~d~~i~i~d~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~ 251 (357)
T 3i2n_A 186 GYDNGDIKLFDLRNMA-----------L-RWETNIKNGVCSLEFDRKDISM--NKLVATSLEGKFHVFDMRTQHPTKGFA 251 (357)
T ss_dssp EETTSEEEEEETTTTE-----------E-EEEEECSSCEEEEEESCSSSSC--CEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred EccCCeEEEEECccCc-----------e-eeecCCCCceEEEEcCCCCCCC--CEEEEECCCCeEEEEeCcCCCccccee
Confidence 9999999999996621 1 23456889999999999 66 89999999999999999987765544
Q ss_pred -----ecCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCC----------CcCceeeeeecccCcCeEEEEecC
Q 014475 216 -----VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS----------SYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 216 -----~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
.+...|.+++|+|++. ++++++.||.|++||++....... ......+..+.+|...|++++|+|
T Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 3788999999999998 899999999999999987543211 011246778889999999999999
Q ss_pred -CCEEE-EeCCCCcEEEEeCCCCcE
Q 014475 280 -GDLLI-SGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 280 -~~~l~-t~~~dg~i~iwd~~~~~~ 302 (424)
+++|+ +++.||.|++||+.+.+.
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCeEEEEecCCCcEEEEECCCccc
Confidence 88887 899999999999987654
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.8e-38 Score=290.79 Aligned_cols=275 Identities=16% Similarity=0.204 Sum_probs=215.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCceeeeec---
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSL--- 78 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--- 78 (424)
.+||+|+ .||+|+|||+.+++....+. ..+|...|.+++ |+| ++++|++++.| |+|++||+++........
T Consensus 133 ~~lasGs-~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~--f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 133 STVAVGS-KGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLK--FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp TCEEEEE-TTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEE--ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSS
T ss_pred CEEEEEe-CCCEEEEEECCCCCceeEEE-ccCCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCC
Confidence 3699999 99999999998877554443 334667788988 998 68899999988 999999998776544333
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccch
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++...
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~- 285 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG- 285 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS-
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc-
Confidence 24468899999999999999999999999985 566778899999999999999875 788999999999999976321
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cC------cceeEEEECCCC
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP------SVIDAIALDPAE 230 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~------~~i~~~~~~~~~ 230 (424)
........+|...|++++|+|++ .+|++++.||.|++||+++++....+. +. ..+....|+|++
T Consensus 286 -------~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 286 -------KASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp -------SSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred -------cceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 11223346799999999999998 899999999999999999887766554 22 123455677777
Q ss_pred CEEEEEe------------CCCcEEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEE-EecC-CCEEEEeCCCCcEEEE
Q 014475 231 HVFYAGS------------RDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCL-AYST-GDLLISGSEDGMVRVW 295 (424)
Q Consensus 231 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~-~~~~-~~~l~t~~~dg~i~iw 295 (424)
..++++. .++.|++||..++. .+.. ..+|...|.++ +|+| +.+|++|+ |+.|+||
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 7777664 23579999998873 3444 44688888887 6999 89999886 8899999
Q ss_pred eCCCCcEE
Q 014475 296 DPITHNIV 303 (424)
Q Consensus 296 d~~~~~~~ 303 (424)
|+++++..
T Consensus 427 ~~~~gk~r 434 (435)
T 4e54_B 427 SQQEARTR 434 (435)
T ss_dssp CCC-----
T ss_pred ECCcCeee
Confidence 99988753
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-38 Score=288.07 Aligned_cols=253 Identities=14% Similarity=0.148 Sum_probs=209.3
Q ss_pred eecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc--ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
...+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999988 78888999999999999999999999999999999999976
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce---eeeee--cCcceeEEEECC
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV--FPSVIDAIALDP 228 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~--~~~~i~~~~~~~ 228 (424)
+. .......+..|...|.+++|+|++ +.|++++.|+.|++||+++++. ...+. |...|.+++|+|
T Consensus 87 ~~--------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 DG--------TWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ----------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CC--------ceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 32 123456677899999999999988 8999999999999999998873 55554 788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCC---------cCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 229 AEHVFYAGSRDGSIYIAALNAESPSTSS---------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
++++|++++.|+.|++||++........ ....++..+ +|...|++++|+| +++|++++.||.|++||+.
T Consensus 157 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 157 NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 9999999999999999999743321110 012445556 8999999999999 9999999999999999999
Q ss_pred CCcE----EEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 299 THNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 299 ~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+++. +..+..|..+|.+++|+|++++|++++.++.+.+|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 9987 8889999999999999999999999987777744443
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=280.55 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=217.8
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEe
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS 150 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd 150 (424)
....|.++|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 446789999999999999999999999999999998 66777888999999999999976 89999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee--e-ecCcceeEEEEC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--I-VFPSVIDAIALD 227 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~i~~~~~~ 227 (424)
+++ ........+..|...|.+++|+|+..+..+++++.|+.|++||++++..... + .+...|.+++|+
T Consensus 86 ~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 86 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred cCC---------CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 965 2223566778899999999999982228999999999999999988743332 2 378899999999
Q ss_pred C-------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC----CEEEEeCCCC
Q 014475 228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDG 290 (424)
Q Consensus 228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~t~~~dg 290 (424)
| ++.++++++.||.|++||++..... ......+.+|...|.+++|+|. .+|++++.||
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 9 6999999999999999999875421 2455678889999999999993 7899999999
Q ss_pred cEEEEeCCCCc---EEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 291 MVRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 291 ~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
.|++||++++. ....+ ..|...|++++|+|++++|++++.||.|++|++....
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999874 22222 3478899999999999999999999999999998543
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7e-38 Score=278.01 Aligned_cols=249 Identities=16% Similarity=0.187 Sum_probs=203.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce---eeeecCCCCeeEEEECC--CCCEEEEecCCCcEEEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~---~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~iwd 108 (424)
+|...|.+++ |+|+|++|++++.| ++|++||+.++.. .....|.++|.+++|+| ++++|++|+.|++|++||
T Consensus 11 ~H~~~V~~v~--~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQ--MDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEE--ECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEee--EcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4667899999 99999999999998 9999999987643 23456899999999986 489999999999999999
Q ss_pred ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+++++ ....+.+|...|.+++|+|+ +.+|++|+.||.|++||+++.. .......+.+|...+.+++|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--------~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--------QWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--------CEEECCBTTSSSSCBCCCEEC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--------CcceeeeeccccCCcceEEEc
Confidence 98874 56677889999999999997 7899999999999999986521 111234557899999999999
Q ss_pred EcCc---------------eeEEEEEeCCCcEEEEecCCC---ceeeeee-cCcceeEEEECCCC----CEEEEEeCCCc
Q 014475 185 YGGV---------------SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPSVIDAIALDPAE----HVFYAGSRDGS 241 (424)
Q Consensus 185 ~~~~---------------~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~ 241 (424)
|+.. +.+|++++.|+.|++||++.. ++...+. |...|.+++|+|++ .+|++++.|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 8731 268999999999999999755 3444554 88899999999986 88999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|++|+++...... .....+..|...|.+++|+| +++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999998632100 11223456889999999999 9999999999999999976
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-37 Score=285.52 Aligned_cols=286 Identities=13% Similarity=0.157 Sum_probs=226.9
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEccC---cce---eee
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GRL---LKK 117 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~---~~~---~~~ 117 (424)
|+|+++.++++. .|+......... ..|.++|++++|+| ++++|++|+.||.|++||+.+ +.. ...
T Consensus 35 f~~~~~~~~~~~-------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN-------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC-------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc-------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 788888877765 377554444334 56889999999999 999999999999999999977 432 222
Q ss_pred eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cC--CcCceeEEEEEEcCceeEEE
Q 014475 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TG--HTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~~~~~~~~~~~~~l~ 193 (424)
+ .|...|.+++|+|++++|++++.||.|++||++...............+..+ .. +...+.++.+....++..++
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 2 5899999999999999999999999999999953111000000011122222 22 56778888866544449999
Q ss_pred EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccC
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHS 269 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~ 269 (424)
+++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++|+.||.|++||++.+ .++..+. .|.
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~ 257 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDH 257 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEEBCTTC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCC
Confidence 99999999999999999988887 5789999999999999999999999999999985 5566654 788
Q ss_pred cCeEEEEecC-----CCEEEEeCCCCcEEEEeCCCCcEEEEEecc--------------------------CCCeeEEEE
Q 014475 270 KAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNIVRMFRLA--------------------------KGPVNNILV 318 (424)
Q Consensus 270 ~~i~~~~~~~-----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~--------------------------~~~v~~l~~ 318 (424)
.+|++++|+| +.+|++|+.||.|++||+++++++..+.+| ...|++++|
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 8999996664 559999999999999999999998888744 456888999
Q ss_pred EecCceeeeccCCCceeeccCCCCCCCCCcc
Q 014475 319 VRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD 349 (424)
Q Consensus 319 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 349 (424)
+ ++++|++|+.|+.|++|++.+.+....+.
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred C-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 9 78999999999999999999877654443
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-36 Score=279.84 Aligned_cols=286 Identities=20% Similarity=0.337 Sum_probs=226.5
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~ 81 (424)
.+|++|+ .||+|++||+.+++....+.+|. ..|.+++ | +++.+++++.| |.|++||+.+++.... ..|..
T Consensus 144 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~--~--~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~ 214 (435)
T 1p22_A 144 QKIVSGL-RDNTIKIWDKNTLECKRILTGHT---GSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE 214 (435)
T ss_dssp SEEEEEE-SSSCEEEEESSSCCEEEEECCCS---SCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred CEEEEEe-CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEE--E--CCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCC
Confidence 3689999 99999999999999998887654 5688877 6 88899999988 9999999998876543 45889
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCccee---eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
.|.+++|++ .++++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++|+.||.|++||+++
T Consensus 215 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~----- 285 (435)
T 1p22_A 215 AVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----- 285 (435)
T ss_dssp CEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-----
T ss_pred cEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-----
Confidence 999999974 59999999999999999988765 667889999999999 678999999999999999965
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (424)
...+..+.+|...|.++.+. + ..+++++.||.|++||+++++++..+. |...+.++++ ++.++++|+
T Consensus 286 ------~~~~~~~~~~~~~v~~~~~~--~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 286 ------CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp ------CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred ------CcEEEEEcCCCCcEEEEEeC--C--CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 34567788999999999883 4 799999999999999999999988887 8889999999 788999999
Q ss_pred CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL 317 (424)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 317 (424)
.||.|++||++.............+..+.+|...|.+++|+ +.+|++|+.||.|++||+.+........ ...+..++.
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 431 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYT 431 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC---------------------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCcccee
Confidence 99999999997764322222223677888999999999994 7789999999999999998876555443 234555555
Q ss_pred EEe
Q 014475 318 VVR 320 (424)
Q Consensus 318 ~s~ 320 (424)
|.+
T Consensus 432 ~~~ 434 (435)
T 1p22_A 432 YIS 434 (435)
T ss_dssp ---
T ss_pred eec
Confidence 543
No 99
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.3e-36 Score=270.53 Aligned_cols=270 Identities=13% Similarity=0.097 Sum_probs=204.9
Q ss_pred EEEeecCCCCC-------ceEEEeCCCCceE--------EEeeCCCCCCCceEEecceeec---------CCCccccCCC
Q 014475 3 LLIASSSVADT-------GIGCWDLESGAEQ--------LRYKSCASPPHGLACVGQRFLA---------SSQLREQPSA 58 (424)
Q Consensus 3 ~~lat~~~~dg-------~i~vwd~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~---------~~~~l~~~~~ 58 (424)
.+||+|+ .|. .|++|++..+... ..+ ....+...+.+++ +.. ++..+++++.
T Consensus 27 ~~l~sGG-g~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~-~l~~~~~~v~s~~--~~~~~~~~g~~~~~~~l~s~~~ 102 (365)
T 4h5i_A 27 TLLVAGG-GGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF-ALEDNDDSPTAID--ASKGIILVGCNENSTKITQGKG 102 (365)
T ss_dssp EEEEEEE-CCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE-ECCTTSCCCCEEE--EETTEEEEECCCCHHHHHHTSC
T ss_pred cEEEEEC-CCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE-EccCCCCceEEEE--eCCCEEEEEECCCccEEEEecC
Confidence 4678876 433 4999998765421 111 1233445566655 432 2334445555
Q ss_pred CceeEEEEECCCCceeee----------ecCCCCeeEEEECCCCCEEEE--ecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475 59 SSGSILYWSWSKPQVEVK----------SLPAEPIKPIAANSHGTYIAG--GGQSGDIYMWEVASGRLLKKWHAHYRAVT 126 (424)
Q Consensus 59 ~~g~i~vwd~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 126 (424)
+ +.+++|++........ ..+...+.+++|||||+++++ ++.|++|+|||+++++++..+. |...|.
T Consensus 103 d-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~ 180 (365)
T 4h5i_A 103 N-KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK 180 (365)
T ss_dssp C-CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred C-CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE
Confidence 5 8999999876542211 113456899999999999765 4578999999999999988886 778899
Q ss_pred EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----cEE
Q 014475 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCK 202 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----~v~ 202 (424)
+++|+|+++++++++.+ .+++|+..++ ..........|...|.+++|+|++ ..+++++.|+ .++
T Consensus 181 ~v~fspdg~~l~s~s~~-~~~~~~~~~~---------~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGS-SLEVISTVTG---------SCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEEECTTSSEEEEECSS-CEEEEETTTC---------CEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSCCEEEE
T ss_pred EEEEccCCceEEeccce-eEEEEEeccC---------cceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcceeEEe
Confidence 99999999999999865 5666766542 222334456788999999999999 8999998887 688
Q ss_pred EEecCCCcee----eeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee-ecccCcCeEEEE
Q 014475 203 VWSLLKGRLL----RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLA 276 (424)
Q Consensus 203 iwd~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 276 (424)
+||+...... ..+. +...|++++|+|++++|++|+.|+.|++||++++ +++.. +.+|..+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~ 319 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVT 319 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEE
Confidence 8998766532 2222 6788999999999999999999999999999986 55655 578999999999
Q ss_pred ecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 277 YST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 277 ~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
|+| +++|++|+.|++|+|||+..
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999 99999999999999999864
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=272.98 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=213.3
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CCEEEEe
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGG 98 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~--~~-~~~~~~~~v~~~~~s~~--~~~l~~~ 98 (424)
+.+..+.+| ...|.+++ |+|+++++++++.| |.|++||+.... .. ....|..+|.+++|+|+ +++|++|
T Consensus 2 ~~~~~~~~h---~~~v~~~~--~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 2 SMVVIANAH---NELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp ---CCEEEC---CCCEEEEE--ECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccEEecCC---cccEEEEE--EcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 444555554 46789999 99999999999987 999999997443 22 33458899999999987 9999999
Q ss_pred cCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC
Q 014475 99 GQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 99 ~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
+.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++||+++. .......+..|
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~ 146 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN---------GTTSPIIIDAH 146 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT---------SCCCEEEEECC
T ss_pred ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC---------CceeeEEecCC
Confidence 999999999999987 67778889999999999998 999999999999999999762 22344566789
Q ss_pred cCceeEEEEEE-------------cCceeEEEEEeCCCcEEEEecCCCcee----eeee-cCcceeEEEECCC---CCEE
Q 014475 175 TLRITDIVIGY-------------GGVSATIVSASEDRTCKVWSLLKGRLL----RNIV-FPSVIDAIALDPA---EHVF 233 (424)
Q Consensus 175 ~~~i~~~~~~~-------------~~~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~-~~~~i~~~~~~~~---~~~l 233 (424)
...|.+++|+| ++ ..+++++.|+.|++||+++++.. ..+. |...|.+++|+|+ +.+|
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKES--RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp TTCEEEEEECCCC----------CTT--CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCceEEEEEcCccccccccccCCCCC--CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 99999999999 45 89999999999999999876533 3333 7889999999999 8999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
++++.||.|++||++...... .........|...|++++|+| +++|++++.||.|++|++..+..
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred EEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 999999999999998864211 123333445889999999999 99999999999999999985543
No 101
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=292.70 Aligned_cols=269 Identities=13% Similarity=0.035 Sum_probs=204.4
Q ss_pred CceEEecceeecCC---------CccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEE
Q 014475 37 HGLACVGQRFLASS---------QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMW 107 (424)
Q Consensus 37 ~~v~~~~~~~~~~~---------~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw 107 (424)
..|.+++ |+|++ ++||+++.+ +.. -..+|+++.+++++.|++|+||
T Consensus 134 ~~V~sv~--w~p~~~~~~~~~~~~~LAv~~~~-~~~----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 134 GLVTDIA--WLNIEENTDIGKDIQYLAVAVSQ-YMD----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp C--CCCS--CEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CceeEEE--ecccCCCCccCcCCeEEEEEEec-ccC----------------------CccchhhhhhccCCCCceEEEE
Confidence 5677888 99987 788887765 210 0137899999999999999999
Q ss_pred EccCccee----eeeccccCCeEEEEEccC------CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475 108 EVASGRLL----KKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (424)
Q Consensus 108 d~~~~~~~----~~~~~~~~~i~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (424)
|+.+++.. ..+..|.+.|.+++|+|+ +.+|++++.||+|++||+.++............+...+.+|...
T Consensus 189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 99887643 345667889999999996 57999999999999999976421100000011223467889999
Q ss_pred eeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-eeeeee-cCcceeEE--EECCCC-CEEEEEeCCCcEEEEEcCCCCC
Q 014475 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAI--ALDPAE-HVFYAGSRDGSIYIAALNAESP 252 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 252 (424)
|++++|+++ ..|++|+.||+|++||+++++ +...+. |...|.++ +++|++ .+|++++.|++|++||+++.
T Consensus 269 v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~-- 343 (524)
T 2j04_B 269 ITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-- 343 (524)
T ss_dssp EEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--
T ss_pred EEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--
Confidence 999999875 479999999999999999764 334444 88999999 578887 89999999999999999885
Q ss_pred CCCCcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc
Q 014475 253 STSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
+....+.+|.. .|.+++|+| +..+++++.|++|++||++++.++.++.+|.++|++++|+|++++|++|+
T Consensus 344 -------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 344 -------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp -------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred -------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence 33444555643 588999999 88999999999999999999999899999999999999999999999999
Q ss_pred CCCceeeccCCCC
Q 014475 330 FSNPHTSSRRHGS 342 (424)
Q Consensus 330 ~d~~i~iw~~~~~ 342 (424)
.||+|++|+....
T Consensus 417 ~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 417 ADGSLIITNAARR 429 (524)
T ss_dssp TTTEEECCBSCSS
T ss_pred CCCEEEEEechHh
Confidence 9999999998754
No 102
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=9.2e-35 Score=266.12 Aligned_cols=310 Identities=13% Similarity=0.103 Sum_probs=248.3
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~ 81 (424)
+.++++++ .|+.|++||+.+++.+..+..+. .+.+++ |+|+++.+++++..++.|++||..+++......+..
T Consensus 2 ~~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 2 TFAYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEcC-CCCEEEEEECCCCeEEEEeecCC----CcceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 46788899 99999999999999998887553 478888 999999885554334999999999888776666667
Q ss_pred CeeEEEECCCCCEEEE-ecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.+.+++|+|++++|++ +..++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.++
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----- 148 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----- 148 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----
Confidence 9999999999998754 556799999999999888877754 568999999999977 68888999999999652
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS- 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 237 (424)
.....+..+ ..+.+++|+|++ +.+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++
T Consensus 149 ------~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 149 ------AVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp ------EEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred ------cEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence 234444444 456899999988 555 677889999999999999988888888999999999999999888
Q ss_pred --CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEE-EEeCCCCcEEEEeCCCCcEEEEEeccCCCe
Q 014475 238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313 (424)
Q Consensus 238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v 313 (424)
.++.|++||++++ +.+..+..|. .+.+++|+| ++++ ++++.|+.|++||+.+++.+..+..|..+.
T Consensus 220 ~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY 289 (391)
T ss_dssp CSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred CcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence 6899999999876 4455565554 578999999 7766 677899999999999999999988776543
Q ss_pred e---EEE------------EEecC----------ceeeeccCCCceeeccCCCCC
Q 014475 314 N---NIL------------VVRRP----------LYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 314 ~---~l~------------~s~~~----------~~l~~~~~d~~i~iw~~~~~~ 343 (424)
. .+. |+.+. ..+...+.|...++|+...+.
T Consensus 290 ~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 290 ASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp CCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred ccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 2 122 33221 345566778888999986553
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.2e-36 Score=280.08 Aligned_cols=254 Identities=15% Similarity=0.204 Sum_probs=218.1
Q ss_pred eecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccC----------cceeeeeccccCCeEEEEEccCCc-EEEEeeCC
Q 014475 76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS----------GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSED 143 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~d 143 (424)
...|.+.|++++|+|+ +.+|++++.+|.|++||+.+ ...+..+.+|...|.+++|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 3568899999999997 78999999999999999987 567788889999999999999988 99999999
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC---ceeeeee-cCc
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS 219 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~ 219 (424)
|.|++||+.+...... .......+.+|...|.+++|+|.+. ..|++++.|+.|++||++++ +....+. |..
T Consensus 204 g~i~vwd~~~~~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 204 HTICLWDINATPKEHR----VIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp SCEEEEETTSCCBGGG----EEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred CeEEEEeCCCCCCCCc----eeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 9999999976321110 1112345678999999999999433 79999999999999999987 4555554 889
Q ss_pred ceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-C-CEEEEeCCCCcEEEEe
Q 014475 220 VIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWD 296 (424)
Q Consensus 220 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~t~~~dg~i~iwd 296 (424)
.+++++|+|++. ++++|+.||.|++||++... .++..+..|...|++++|+| + .+|++++.||.|++||
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 999999999887 68899999999999999853 45677888999999999999 5 5799999999999999
Q ss_pred CCC--------------CcEEEEEeccCCCeeEEEEEecCc-eeeeccCCCceeeccCCCC
Q 014475 297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~d~~i~iw~~~~~ 342 (424)
+.. .+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 987 467888889999999999999999 8999999999999998744
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-35 Score=271.85 Aligned_cols=279 Identities=13% Similarity=0.117 Sum_probs=227.1
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCc---eeeee-------------------------------------
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKS------------------------------------- 77 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~---~~~~~------------------------------------- 77 (424)
++.+++ |+++|++++++. + +.|++||+.+++ .....
T Consensus 6 p~~~v~--~s~dg~~l~~~~-~-~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 6 PLQNLL--TSRDGSLVFAII-K-NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCEEE--ECSSSSEEEEEE-T-TEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cEEEEE--ecCCCCEEEEEe-C-CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 467777 999999666654 4 899999988776 22111
Q ss_pred ------------------cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEcc--Ccceeeeec--cccCCeEEEEEccCC
Q 014475 78 ------------------LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVA--SGRLLKKWH--AHYRAVTCLVFSEDG 134 (424)
Q Consensus 78 ------------------~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~i~~~~~~~~~ 134 (424)
.|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 122369999999999996 899999999999999 888888876 567899999999999
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc---CceeEEEEEeCCCcEEEEecCCCce
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL 211 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~~~d~~v~iwd~~~~~~ 211 (424)
++|++++.+|.+++|++.++... ......+.+|...|.+++|+|+ + .+|++++.|+.|++||+++++.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~--~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEE-------KFTQEPILGHVSMLTDVHLIKDSDGH--QFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCS-------SCCCCCSEECSSCEEEEEEEECTTSC--EEEEEEETTSCEEEEEESCTTC
T ss_pred CEEEEEeCCCcEEEEecCCcccc-------cccceeeecccCceEEEEEcCCCCCC--cEEEEEcCCCcEEEEECCCCce
Confidence 99999999999999999763211 0023356779999999999999 6 8999999999999999999988
Q ss_pred eeeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-----------------------
Q 014475 212 LRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS----------------------- 266 (424)
Q Consensus 212 ~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----------------------- 266 (424)
+..+. |...|.+++|+ ++++|++++.|+.|++||++++. .+..+.
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK---------NLSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC---------EEEEEECHHHHGGGCCTTSBC--------
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc---------Eeeeecchhhhhhhhhhcccccccccccc
Confidence 87643 88999999999 99999999999999999999864 222222
Q ss_pred --ccCcCeEEEEecC-CCEEEEeC-CCCcEEEEeC--CCC---cEEEEEeccCCCeeEEEEEecCceeeeccC------C
Q 014475 267 --DHSKAVTCLAYST-GDLLISGS-EDGMVRVWDP--ITH---NIVRMFRLAKGPVNNILVVRRPLYLNLGSF------S 331 (424)
Q Consensus 267 --~~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------d 331 (424)
.....|.+++|+| +++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++.++++++. +
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~ 381 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQK 381 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCC
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCC
Confidence 2346799999999 88999888 8999999999 666 777888887 89999999997655555543 4
Q ss_pred CceeeccCC
Q 014475 332 NPHTSSRRH 340 (424)
Q Consensus 332 ~~i~iw~~~ 340 (424)
..|.+|.+.
T Consensus 382 ~~i~v~~~~ 390 (450)
T 2vdu_B 382 NFAKFIEYN 390 (450)
T ss_dssp CSEEEEEEE
T ss_pred cceEEEEEE
Confidence 557888765
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.3e-36 Score=274.85 Aligned_cols=275 Identities=15% Similarity=0.218 Sum_probs=222.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceE-EEeeCCCCCCCceEEecceeec-CCCccccCCCCceeEEEEECCCCc--------
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQ-LRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ-------- 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~g~i~vwd~~~~~-------- 72 (424)
.++++++ .||.|+|||+.+.... ..+....+|...|.+++ |+| +++++++++.| |.|++||+.++.
T Consensus 48 ~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 48 ALICEAS-GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREP 123 (402)
T ss_dssp EEEBCCS-SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETT-SEEEEEECCTTCCSSCBCSC
T ss_pred EEEEEEc-CCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCC-CeEEEEEccCCCCccccCCc
Confidence 3566778 8999999999654322 22333445678899999 999 89999999987 999999998763
Q ss_pred eeeeecCCCCeeEEEECCCC-CEEEEecCCCcEEEEEccCcceeeee--ccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 73 VEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 73 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
......|...|.+++|+|++ ++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++|
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 23445689999999999998 69999999999999999999999998 8899999999999999999999999999999
Q ss_pred eCCcccchhcccccccceEEee-cCCcCc-eeEEEEEEcCceeEEEEE---eCCCcEEEEecCCCce-ee--eeecCcce
Q 014475 150 SLLTVFEECESQRASHLYLHSF-TGHTLR-ITDIVIGYGGVSATIVSA---SEDRTCKVWSLLKGRL-LR--NIVFPSVI 221 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~~~---~~d~~v~iwd~~~~~~-~~--~~~~~~~i 221 (424)
|+++ ...+..+ ..|... +.++.|++++ .+++++ +.|+.|++||+++++. .. .+.+...+
T Consensus 204 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 204 EPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp ETTT-----------TEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred eCCC-----------CceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 9965 3345555 677765 8999999987 888888 7899999999998764 22 23367789
Q ss_pred eEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 222 DAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 222 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
.+++|+|+++++++ |+.||.|++||+.++.+. ...+..+. |...|.+++|+| +.++++ .++.+++|++.+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99999999999875 557999999999986421 01222232 568999999999 777654 466999999987
Q ss_pred CcE
Q 014475 300 HNI 302 (424)
Q Consensus 300 ~~~ 302 (424)
++.
T Consensus 343 ~~~ 345 (402)
T 2aq5_A 343 RKC 345 (402)
T ss_dssp TEE
T ss_pred CcE
Confidence 653
No 106
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-35 Score=263.96 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=216.6
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-----eeeecCCCCeeEEEECC--CCCEEEEecCCCcEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYM 106 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~i 106 (424)
+|...|.+++ |+|++++|++++.| |.|++||+.++.. .....|..+|.+++|+| ++++|++|+.||.|++
T Consensus 9 gH~~~v~~~~--~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVV--YDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEE--EcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 4667899999 99999999999988 9999999986532 12246899999999999 6999999999999999
Q ss_pred EEccCc---------ceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccc--eEEeecC
Q 014475 107 WEVASG---------RLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHL--YLHSFTG 173 (424)
Q Consensus 107 wd~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~ 173 (424)
||++++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||++++............ .......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999887 457778889999999999999 999999999999999999875432221110000 0111236
Q ss_pred CcCceeEEEEEEc---CceeEEEEEeCCCcEEEEecCCCce--eeeee-cCcceeEEEECCCC----CEEEEEeCCCcEE
Q 014475 174 HTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL--LRNIV-FPSVIDAIALDPAE----HVFYAGSRDGSIY 243 (424)
Q Consensus 174 ~~~~i~~~~~~~~---~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~i~ 243 (424)
|...+.+++|+|+ + ..+++++.++.+.+|+...++. +..+. |...|.+++|+|++ ++|++++.||.|+
T Consensus 166 ~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSP--EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp CSCCCEEEEECCCSSSC--CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred cccceeEEEeccCCCCC--cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 8889999999997 5 8999999999998888877765 33443 78899999999998 8999999999999
Q ss_pred EEEcCCCCCCC-------------------------------------CCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475 244 IAALNAESPST-------------------------------------SSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 244 i~d~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t 285 (424)
+||++...... .......+..+.+|...|++++|+| +++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 99998752211 0111256677888999999999999 999999
Q ss_pred eCCCCcEEEEeCCCCcEEEEEe
Q 014475 286 GSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
++.||.|++||+.+++.+..+.
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EETTSCEEEEEECTTSCEEEEE
T ss_pred ecCCCcEEEEecCcCcchhhee
Confidence 9999999999999886555443
No 107
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=277.00 Aligned_cols=258 Identities=17% Similarity=0.259 Sum_probs=207.8
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-----------eeeeecccc------------CCeEEEEEccCC
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----------LLKKWHAHY------------RAVTCLVFSEDG 134 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~~ 134 (424)
.+.+.|.+++|+|++++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457899999999999999999999999999998876 477888898 889999999988
Q ss_pred --cEEEEeeCCCcEEEEeCCcccchhcccc----------------------------cccceEEe-ecCCcCceeEEEE
Q 014475 135 --SFLISGSEDGCVRIWSLLTVFEECESQR----------------------------ASHLYLHS-FTGHTLRITDIVI 183 (424)
Q Consensus 135 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~~-~~~~~~~i~~~~~ 183 (424)
..|++++.||.|++||+.+......... ........ ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 7999999999999999976332100000 00001112 3679999999999
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCC-Cceeeee--------ecCcceeEEEECCCC-CEEEEEeCCCcEEEEEcCCCCCC
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLK-GRLLRNI--------VFPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPS 253 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 253 (424)
+|++ ++|+++ .|+.|++||+++ ++....+ .|...|.+++|+|++ .+|++|+.||.|++||++.....
T Consensus 186 ~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred cCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9988 889998 799999999984 4444432 377889999999998 99999999999999999986521
Q ss_pred CCCcCceeeeeecccCc------------CeEEEEecC-CCEEEEeCCCCcEEEEeCCC-CcEEEEEeccCCC-------
Q 014475 254 TSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGP------- 312 (424)
Q Consensus 254 ~~~~~~~~~~~~~~~~~------------~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~-~~~~~~~~~~~~~------- 312 (424)
. .....+..|.. .|.+++|+| +++|++++. +.|++||+++ ++++..+..|...
T Consensus 263 ~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 263 D-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp C-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred c-----ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 1 11345555554 999999999 999999998 9999999997 8899999888642
Q ss_pred --------eeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 313 --------VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 313 --------v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+..++|+|++++|++|+.||.|++||+.+++.
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999997754
No 108
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=274.67 Aligned_cols=261 Identities=11% Similarity=-0.012 Sum_probs=212.8
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 116 (424)
.+|.+++ |+|||+++|+++.| ++|+ |...++.. ..|...|.+++|+|+| .++.+.+|+.+. ....
T Consensus 16 ~~v~sv~--~SpDG~~iASas~D-~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~-~~~~ 80 (588)
T 2j04_A 16 DWKNNLT--WARDGTLYLTTFPD-ISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQ-NGLL 80 (588)
T ss_dssp SSSCCEE--ECTTSCEEEECSSS-EEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCS-SCSS
T ss_pred ccEEEEE--ECCCCCEEEEEcCC-ceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCC-ceEe
Confidence 6678888 99999999999998 9999 75444332 5789999999999999 455555555332 2222
Q ss_pred eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC-----ceeEEEEEEcCceeE
Q 014475 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----RITDIVIGYGGVSAT 191 (424)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~ 191 (424)
.+ .|...|.+++|+|+|++|++++.||.|++||... .+..+. |.. .+.+++|+|++ ++
T Consensus 81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------~l~~l~-~~~~~~~~sv~svafSPDG--~~ 143 (588)
T 2j04_A 81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------MLTNLD-SKGNLSSRTYHCFEWNPIE--SS 143 (588)
T ss_dssp TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------EEEECC-CSSCSTTTCEEEEEECSSS--SC
T ss_pred ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------eeeecc-CCCccccccEEEEEEcCCC--CE
Confidence 32 4588999999999999999999999999999632 444455 555 59999999999 99
Q ss_pred EEEEeCCCcEEEEecCCCce-------eeeee-----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCc
Q 014475 192 IVSASEDRTCKVWSLLKGRL-------LRNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 192 l~~~~~d~~v~iwd~~~~~~-------~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (424)
|++|+.||+|++||+.+++. +..+. |...|.+++|+|+| +++++.|+.+++||+..+...
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~------ 215 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ------ 215 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC------
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc------
Confidence 99999999999999998753 45542 45699999999999 888999999999999886411
Q ss_pred eeeeee-cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE--EecCceeeeccCCCceee
Q 014475 260 HIIGSL-SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV--VRRPLYLNLGSFSNPHTS 336 (424)
Q Consensus 260 ~~~~~~-~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~~~d~~i~i 336 (424)
.....+ .+|...|.+++|+ ++.||+++ ++.|++||+.+++......+|.+.|..++| +|+++.|++++.||+ ++
T Consensus 216 ~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-kl 292 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KV 292 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EE
T ss_pred cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EE
Confidence 123345 3788999999999 89999998 699999999988774444479999999999 999999999999999 99
Q ss_pred ccCC
Q 014475 337 SRRH 340 (424)
Q Consensus 337 w~~~ 340 (424)
|...
T Consensus 293 w~~d 296 (588)
T 2j04_A 293 LLED 296 (588)
T ss_dssp EESS
T ss_pred Eeec
Confidence 9876
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=4.6e-35 Score=252.53 Aligned_cols=270 Identities=10% Similarity=0.054 Sum_probs=199.5
Q ss_pred eEEEeecCCCCCceEEEeCCCC---ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec
Q 014475 2 ELLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL 78 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~ 78 (424)
|..+++++ +.+|++|+..++ +.+.+++.++ ..|..+. +.||..-|+...- -..
T Consensus 54 ~~~~~~~~--~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~--~~~~~~~~~~~~~-----------------~~~ 109 (356)
T 2w18_A 54 EPCIITAC--EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIV--PVPDVYNLVCVAL-----------------GNL 109 (356)
T ss_dssp EEEEEEEE--SSEEEEEEESSSSBEEEEEEEECCS---SCEEEEC--CCTTCCSCEEEEE-----------------CSS
T ss_pred ccEEEEec--cceEEEcccCCCccceeeEEEeccC---ceeEEEE--EcCcccceeeeee-----------------ccc
Confidence 67889999 689999999999 7888887655 4566667 8887664443322 123
Q ss_pred CCCCeeEEEECCC----CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCC
Q 014475 79 PAEPIKPIAANSH----GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLL 152 (424)
Q Consensus 79 ~~~~v~~~~~s~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 152 (424)
+...|++++|+|| ++++++++.+ +.+|++.+ ++++.+++ .|+.|++|++.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~----------------------g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK----------------------RRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETT----------------------TEEEEEESSSTTCEEEEEEEC
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCC----------------------CcEEEecccCCCCcEEEEEEC
Confidence 4568999999999 9999998744 77786543 33333322 36666666663
Q ss_pred cccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeee-c---CcceeEEEEC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALD 227 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~---~~~i~~~~~~ 227 (424)
. ....+.....|...++.++|++ ++++..|++++.|++|++||++++++++.+. + ...+.+++|+
T Consensus 166 ~----------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 166 E----------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp T----------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred C----------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 2 1223444567888899999999 4555899999999999999999999999987 3 2467788999
Q ss_pred CCCCEE------------EEEeCCCcEEEEEcCCCCCCCCCcCceeeeee-----cccCcCeEEEEecCCCEEEEeCCCC
Q 014475 228 PAEHVF------------YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 228 ~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
|++.++ ++|+.|++|++||..++. .+..+ .+|...+.+..++ +.++++++.|+
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~Dg 305 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSG 305 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTTE---------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTS
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCC
Confidence 999876 557789999999998863 33222 3666555444444 78999999999
Q ss_pred cEEEEeCCCCcEEEEEeccCCCee-EEEEEecCceeeeccCCCceeeccC
Q 014475 291 MVRVWDPITHNIVRMFRLAKGPVN-NILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|++|++
T Consensus 306 TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999987655 5899999999999999999999985
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.1e-34 Score=264.82 Aligned_cols=302 Identities=13% Similarity=0.099 Sum_probs=241.9
Q ss_pred ecCCCCCceEEEeCCC--C--ceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee------
Q 014475 7 SSSVADTGIGCWDLES--G--AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------ 76 (424)
Q Consensus 7 t~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------ 76 (424)
+++ .++.++||.+.. + +.+..+..+ ..+.+++ |+|++.++++++.+ +.|++||..+++....
T Consensus 94 ~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~--~s~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~ 165 (433)
T 3bws_A 94 RKP-EELNEKLIALDKEGITHRFISRFKTG----FQPKSVR--FIDNTRLAIPLLED-EGMDVLDINSGQTVRLSPPEKY 165 (433)
T ss_dssp SSG-GGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCE--ESSSSEEEEEBTTS-SSEEEEETTTCCEEEECCCHHH
T ss_pred ccc-CCCceEEEEECCCCCcceEEEEEcCC----CCceEEE--EeCCCeEEEEeCCC-CeEEEEECCCCeEeeecCcccc
Confidence 444 666556665543 4 455555433 2344666 99976666666665 9999999998776532
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE-eeCCCcEEEEeCCccc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVF 155 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~ 155 (424)
..|...|.+++|+|+++++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||++++
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~- 244 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK- 244 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-
Confidence 246779999999999999999999999999999999999999889999999999999998854 447999999999652
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--------CCCcEEEEecCCCceeeeeecCcceeEEEEC
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALD 227 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~ 227 (424)
..+..+.. ...+.+++|+|++ +.+++++ .|+.|++||+++++....+.+...+.+++|+
T Consensus 245 ----------~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 311 (433)
T 3bws_A 245 ----------LEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG 311 (433)
T ss_dssp ----------EEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEEC
T ss_pred ----------cEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEEC
Confidence 23333443 4468999999998 7888777 5889999999999988888788889999999
Q ss_pred CCCCEE-EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC---------------CC
Q 014475 228 PAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---------------DG 290 (424)
Q Consensus 228 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~---------------dg 290 (424)
|+++.+ ++++.++.|++||++++ +....+. +...+.+++|+| ++++++++. ||
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg 381 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG 381 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred CCCCEEEEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence 999755 55689999999999875 3444443 677899999999 888887765 57
Q ss_pred cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeecc-CCCceeeccCCC
Q 014475 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHG 341 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~~ 341 (424)
.|++||+.+++.+..+.. ...+.+++|+|++++|++++ .|+.|++|++.+
T Consensus 382 ~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999999999999998886 46789999999999998776 599999999863
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=292.30 Aligned_cols=257 Identities=18% Similarity=0.161 Sum_probs=217.7
Q ss_pred eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEe
Q 014475 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS 150 (424)
Q Consensus 75 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd 150 (424)
....|.++|++++|+|++++|++|+.||.|++||+. +++....+.+|.++|++++|+|+ +++|++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 345789999999999999999999999999999998 55778888999999999999987 99999999999999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee--ee-ecCcceeEEEEC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NI-VFPSVIDAIALD 227 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~-~~~~~i~~~~~~ 227 (424)
+.+ ........+.+|...|.+++|+|+..+..+++++.||.|++||++++.... .+ .+...|.+++|+
T Consensus 84 ~~~---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 84 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEEC
T ss_pred CCC---------CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEec
Confidence 965 223356677889999999999998222899999999999999998874332 22 378899999999
Q ss_pred C-------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCC----CEEEEeCCCC
Q 014475 228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDG 290 (424)
Q Consensus 228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~t~~~dg 290 (424)
| ++..+++|+.||.|++||++..... ......+.+|...|++++|+|. .+|++|+.||
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 9 5899999999999999999876421 2456677899999999999983 6899999999
Q ss_pred cEEEEeCCCCc-----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 291 MVRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 291 ~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
.|++||+++++ .+.....|.+.|++++|+|++++|++++.||.|++|++......
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~ 289 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCC
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCc
Confidence 99999999874 33344468889999999999999999999999999999865443
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=272.81 Aligned_cols=278 Identities=13% Similarity=0.112 Sum_probs=214.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
++||++ .|++|+ |.+.++.+ .+|...|.+++ |+|+| .+ +.+.+|+.+... .....+...|
T Consensus 29 ~iASas-~D~TV~--d~~~~~~l------~gh~~~v~~V~--FsPdg-------~~-~~~~~~~~~~~~-~~~~~~~~~V 88 (588)
T 2j04_A 29 LYLTTF-PDISIG--QPKYAKDI------NCNSKNLFHVK--EFPLE-------FE-NKLDFELAQQNG-LLNSQPVCYP 88 (588)
T ss_dssp EEEECS-SSEEEE--EECCCSCC------SSBGGGTEEEE--EECCC-------CC-CTTTTSCCCSSC-SSTTSCSCCE
T ss_pred EEEEEc-CCceee--ccccccee------cCCCccEEEEE--ECCCC-------Cc-ceEEEEeCCCce-EeecCCCCcE
Confidence 789999 999999 75554433 35778899999 99999 22 777777755433 2333557899
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC-----CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
.+++|||+|++||+++.||.|++||.++ ++..+. |.. .|.+++|+|+|++|++|+.||+|++||+.++..
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l-- 163 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE-- 163 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT--
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc--
Confidence 9999999999999999999999999544 666666 665 499999999999999999999999999976210
Q ss_pred cccccccceEEee----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee---eeee--cCcceeEEEECCC
Q 014475 159 ESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV--FPSVIDAIALDPA 229 (424)
Q Consensus 159 ~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~--~~~~i~~~~~~~~ 229 (424)
.......+..+ .+|...|.+++|+|+ . +++++.|++|++||+.+++.. ..+. |...|.+++|+
T Consensus 164 --~~~~~i~l~ti~~~~~gh~~~V~sVawSPd---g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 164 --NTPEFYFESSIRLSDAGSKDWVTHIVWYED---V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp --TCCCCEEEEEEECSCTTCCCCEEEEEEETT---E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred --ccccceeeeeeecccccccccEEEEEEcCC---c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 00001134554 678899999999987 4 889999999999999887742 3453 66789999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe--cC-CCEEEEeCCCCcEEEEeCCCCcEEEEE
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~ 306 (424)
+..+++++ ++.|++||+..+ .......+|...|..++| +| +..++++++||+ ++|....
T Consensus 236 g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~------- 297 (588)
T 2j04_A 236 DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE------- 297 (588)
T ss_dssp TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------
T ss_pred CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------
Confidence 68888887 699999999986 332333379999999999 99 889999999999 9999761
Q ss_pred eccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
++++||+..+++. |+++++|+..+..
T Consensus 298 ---------~~~spd~~l~a~~--d~~v~lW~~~g~~ 323 (588)
T 2j04_A 298 ---------LHVTADNIIAPYL--EKKFKKWSTIWNE 323 (588)
T ss_dssp ---------EEEECCCSSHHHH--HHHHHHTTTTTTS
T ss_pred ---------EEECCCceEEEEc--CCEEEEEECCCCc
Confidence 4466666655554 6666666664443
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.3e-35 Score=261.04 Aligned_cols=260 Identities=15% Similarity=0.135 Sum_probs=223.3
Q ss_pred EEeecCCCCCceEEEeCCCCc---eEEEeeCCCCCCCceEEecceeecCCC-ccccCCCCceeEEEEEC-CCCceeeeec
Q 014475 4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW-SKPQVEVKSL 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~-~~~~~~~~~~ 78 (424)
+|++++ .||.|+|||+.+++ ....+. .|...|.+++ |+|+++ ++++++.+ |.|++||+ .+++......
T Consensus 25 ~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 25 LLLITS-WDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCN--FIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEE-TTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEE--EEESSSEEEEEEETT-SCEEEECSSSSSSEEECBS
T ss_pred EEEEEc-CCCeEEEEEeCCCCccccceeee---ecCCceEEEE--ECCCCCcEEEEEcCC-CeEEEEEeccCCceEeccc
Confidence 688898 99999999999887 233333 3557799999 999999 99999987 99999999 8887766677
Q ss_pred --CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------cceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475 79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVR 147 (424)
Q Consensus 79 --~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 147 (424)
|...|.+++|+| ++++++++.|+.|++||+++ ++.+..+. |...|.+++|+|++ +++++.|+.|+
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~ 173 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQ 173 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEE
Confidence 999999999999 99999999999999999998 77777777 88999999999876 99999999999
Q ss_pred EEeCCc-ccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCC------ceeeeee-cC
Q 014475 148 IWSLLT-VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG------RLLRNIV-FP 218 (424)
Q Consensus 148 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~-~~ 218 (424)
+||+++ +. .........|...+.+++|+| ++ ..+++++.||.+++||++.. +....+. +.
T Consensus 174 i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 174 WFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEECCcccc---------ccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 999965 21 112334456888999999999 87 89999999999999999876 6666665 43
Q ss_pred c---------ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecC-CCEEEEeC
Q 014475 219 S---------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 219 ~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~l~t~~ 287 (424)
. .|.+++|+|++++|++++.||.|++||++++ +.+..+.+| ..+|.+++ | +++|++++
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------hHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 3 8999999999999999999999999999986 567788888 99999999 6 99999999
Q ss_pred CCCc-EEEEe
Q 014475 288 EDGM-VRVWD 296 (424)
Q Consensus 288 ~dg~-i~iwd 296 (424)
.||. .+.|.
T Consensus 312 ~Dg~~~~~~~ 321 (342)
T 1yfq_A 312 SDDTFKTNAA 321 (342)
T ss_dssp ECTHHHHCSS
T ss_pred cCCccccccc
Confidence 9998 65555
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.1e-34 Score=257.84 Aligned_cols=290 Identities=9% Similarity=0.021 Sum_probs=210.0
Q ss_pred EEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-
Q 014475 17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI- 95 (424)
Q Consensus 17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l- 95 (424)
||++.+.+.+.++.. |...|.+++ |+|+|+++++++.+ + +++|+.+..+......+ ..+..+++.++++.+
T Consensus 3 i~s~~~~~~~~~~~~---h~~~V~~v~--fs~dg~~la~g~~~-~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENH---VSNPVTDYE--FNQDQSCLILSTLK-S-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -------------------CCCCCEEE--ECTTSSEEEEECSS-E-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEE
T ss_pred cccccccCCcccccc---CCCceEEEE--ECCCCCEEEEEcCC-E-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEE
Confidence 566666666655544 457788888 99999999988765 4 78999887665544333 358889999988887
Q ss_pred EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475 96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (424)
Q Consensus 96 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (424)
++++.|+.|++||..+++.+..+. +...|.++.|+++. ++++ .|+.|++||+.+.. ..+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~----------~~~~~~~~-- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW----------KRITDDIR-- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC----------CBSSCCEE--
T ss_pred EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc----------eeeEEecc--
Confidence 567788999999999999988887 67799999998763 4444 47899999997631 11112221
Q ss_pred CceeEEEEEEcCceeEEEE-EeCCCcEEEEecCCCc---------------e-eeeee-cCcceeEEEECCCCCEEEEEe
Q 014475 176 LRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGR---------------L-LRNIV-FPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 176 ~~i~~~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (424)
+...+++++ . ...++ |+.||.|++||+++++ + +..+. |...|.+++|+|++++|++|+
T Consensus 139 -~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 -FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEEEEET-T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 333344554 2 34444 7899999999999765 1 44444 889999999999999999999
Q ss_pred CCCc-EEEEEcCCCCCCCCCcCceeeeeec-c-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE--EEE-----
Q 014475 238 RDGS-IYIAALNAESPSTSSYGMHIIGSLS-D-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV--RMF----- 306 (424)
Q Consensus 238 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~--~~~----- 306 (424)
.|++ |++||++++ +.+..+. + |...|.+++|+| +++|++++.|++|++||++.+... ..+
T Consensus 215 ~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 215 QDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 9998 999999986 5566676 5 999999999999 999999999999999999765321 111
Q ss_pred -------------e---ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 307 -------------R---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 307 -------------~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
. .+..+...++|++++++|++++.||.+++|++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1 112234779999999999999999999999987543
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=257.51 Aligned_cols=266 Identities=7% Similarity=0.021 Sum_probs=199.8
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc---------Ccceee
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLK 116 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~~~ 116 (424)
+.+++..+++++.| |.|++||+.+++...... ...|.++.|+|+ +++++.|++|++|+.. +++.+.
T Consensus 44 ~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCED-GALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 55677777777776 888888877766543332 456777777777 7778888888888654 455444
Q ss_pred eec-cccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee-cCCcCceeEEEEEEcCceeEE
Q 014475 117 KWH-AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 117 ~~~-~~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l 192 (424)
.+. +|...|.+++|+| +++++++++.||.|++||++++. ..... ..|...+.+++|+|++ .+|
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------~~~~~~~~~~~~i~~~~~~pdg--~~l 185 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------QYIVHSAKSDVEYSSGVLHKDS--LLL 185 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------EEEEECCCSSCCCCEEEECTTS--CEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------EEEEEecCCCCceEEEEECCCC--CEE
Confidence 443 5778999999999 99999999999999999996522 23333 3456689999999998 899
Q ss_pred EEEeCCCcEEEEecCCCcee-eeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 193 VSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
++|+.||.|++||+++++.. ..+. |...|.+++|+|++.+|++++ ++.|++||++....... +..+..|.
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------~~~~~~~~ 258 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------YPTYTIPE 258 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------SCCCBC--
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------eccccccc
Confidence 99999999999999999877 5554 689999999999999999999 45999999998753211 22222243
Q ss_pred cCe--EEEEecC-CCEEEEeCC-CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEe---cCceeeeccCCCceeeccCC
Q 014475 270 KAV--TCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR---RPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 270 ~~i--~~~~~~~-~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~d~~i~iw~~~ 340 (424)
..+ .+++|+| +++|++++. |+.|++|++.+....... .++..+.|.+ +...|++++.|+.+.++-..
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 444 4699999 999999888 999999999766543332 5677888888 88899999999998887644
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=285.69 Aligned_cols=250 Identities=15% Similarity=0.188 Sum_probs=210.7
Q ss_pred CCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--e-eeecCCCCeeEEEECCC--CCEEEEecCCCcEEEEE
Q 014475 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--E-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE 108 (424)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~-~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iwd 108 (424)
+|...|.+++ |+|+++++++++.| |.|++||+.++.. . ....|.++|.+++|+|+ +++|++|+.||.|++||
T Consensus 7 gH~~~V~~l~--~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 7 AHNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp -CCCCEEEEC--CCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred cCcceeEEEE--ECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 4667899999 99999999999987 9999999974432 2 33468899999999988 99999999999999999
Q ss_pred ccCcc--eeeeeccccCCeEEEEEccC--CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 109 ~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||.|++||+++. .......+.+|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~---------~~~~~~~~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN---------GTTSPIIIDAHAIGVNSASWA 154 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS---------SCCCCEEEECCSSCEEEEEEC
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC---------CCcceeEeecCCCceEEEEec
Confidence 99886 67778889999999999998 999999999999999999763 223344567899999999999
Q ss_pred EcC-----------ceeEEEEEeCCCcEEEEecCCCc----eeeeee-cCcceeEEEECCC---CCEEEEEeCCCcEEEE
Q 014475 185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA---EHVFYAGSRDGSIYIA 245 (424)
Q Consensus 185 ~~~-----------~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~ 245 (424)
|.. ++..+++++.||.|++||++++. ....+. |...|.+++|+|+ +.++++++.||.|++|
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 941 12899999999999999998773 334444 7889999999999 8999999999999999
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
|++.+..... ........|...|++++|+| +.++++|+.||.|++||+.+
T Consensus 235 d~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 235 TQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9988642111 22334456889999999999 99999999999999999874
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=256.30 Aligned_cols=268 Identities=10% Similarity=0.122 Sum_probs=219.5
Q ss_pred EEEeecCCCCCceEEEeCCC-CceE-EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC
Q 014475 3 LLIASSSVADTGIGCWDLES-GAEQ-LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~ 80 (424)
.+||+++ .||.|+|||+++ +..+ ..+.. |...|.+++ |+|+++++++++.| |.|++||+.+++......|.
T Consensus 55 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~ 127 (368)
T 3mmy_A 55 NFLIAGS-WANDVRCWEVQDSGQTIPKAQQM---HTGPVLDVC--WSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHD 127 (368)
T ss_dssp EEEEEEE-TTSEEEEEEECTTSCEEEEEEEE---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECS
T ss_pred eEEEEEC-CCCcEEEEEcCCCCceeEEEecc---ccCCEEEEE--ECcCCCEEEEEcCC-CcEEEEEcCCCCceeecccc
Confidence 6899999 999999999997 5555 55555 446788888 99999999999988 99999999999888778899
Q ss_pred CCeeEEEE--CCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 81 EPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 81 ~~v~~~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
.+|.+++| +|++++|++++.||.|++||+++++.+..+..+. .+.++.+.+ ..+++++.++.+++|+++...
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~--- 201 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQP--- 201 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSC---
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEecccc---
Confidence 99999999 9999999999999999999999999988888664 577777764 478889999999999997622
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCc--eeEEEEEeCCCcEEEEecCCC---ceeeeee-cCc------------c
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS------------V 220 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~---~~~~~~~-~~~------------~ 220 (424)
.........+...+.++.+.+... ...+++++.||.|++||++.. +....+. +.. .
T Consensus 202 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (368)
T 3mmy_A 202 ------SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA 275 (368)
T ss_dssp ------EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred ------chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence 112222233445566666666542 244999999999999999887 4445554 332 6
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
|.+++|+|++++|++++.||.|++||++++ ..+..+..|..+|++++|+| +.+|++++.|+..+.|++.
T Consensus 276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred eEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 999999999999999999999999999986 66788889999999999999 9999999988765555543
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.4e-35 Score=266.06 Aligned_cols=280 Identities=9% Similarity=0.019 Sum_probs=199.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCce----------eeeecCCCCeeEEEE--------------------CCCCCEE
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQV----------EVKSLPAEPIKPIAA--------------------NSHGTYI 95 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~----------~~~~~~~~~v~~~~~--------------------s~~~~~l 95 (424)
..+++..+++++.+ +.|.+|+...... .....+..++..+.| ++++.+|
T Consensus 26 ~~~~~~~l~a~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (393)
T 4gq1_A 26 QSPSCSNLLAIGHD-TGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFL 104 (393)
T ss_dssp TSGGGTTEEEEEES-SEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEE
T ss_pred CCCCCCCEEEEECC-CCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEE
Confidence 45666666666665 7888887542210 111123334444444 3456689
Q ss_pred EEecCCCcEEEEEccCccee-----eeeccccCCeEEEEEcc--------CCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 96 AGGGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSE--------DGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 96 ~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~--------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
++++.|++|++||.++++.. ..+.+|.+.|++++|+| ++++|++|+.|++|+|||+++
T Consensus 105 as~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~--------- 175 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD--------- 175 (393)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET---------
T ss_pred EEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC---------
Confidence 99999999999999887543 34688999999999997 789999999999999999954
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee--------------------------e
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI--------------------------V 216 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------------------~ 216 (424)
.........|..++.+++|+|++. .+|++++.|++|++||+++++..... .
T Consensus 176 --~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 176 --EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp --TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred --CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 334556677899999999999863 58999999999999999887644322 1
Q ss_pred cCcceeEEEEC-CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC----------ceeeeeecccCcCeEEEEecC--CCEE
Q 014475 217 FPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----------MHIIGSLSDHSKAVTCLAYST--GDLL 283 (424)
Q Consensus 217 ~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~--~~~l 283 (424)
+...+.++.|+ |+++.+++++.|+.+++||+........... .........+...+..+.+.+ +.++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 34567788876 7999999999999999999977542211000 000111222223333333333 3467
Q ss_pred EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
++|+.||.|++||+.+++++..+..|..+|.+++|+|||++||+++.+| +.+|++
T Consensus 333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 7888999999999999999999899999999999999999999998777 555544
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-33 Score=257.37 Aligned_cols=237 Identities=14% Similarity=0.150 Sum_probs=196.0
Q ss_pred ceEEecceeecCCCcc-ccCCCCceeEEEEECC--CCceeeee---cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 38 GLACVGQRFLASSQLR-EQPSASSGSILYWSWS--KPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l-~~~~~~~g~i~vwd~~--~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
.|.+++ |+|++++| ++++.+ |.|++||+. +++..... .+...|.+++|+|++++|++|+.+|.|++|++.+
T Consensus 104 ~v~~~~--~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLR--LTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CEEEEE--ECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred ceEEEE--EcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 588999 99999997 666666 999999998 65544332 5678999999999999999999999999999988
Q ss_pred cceee----eeccccCCeEEEEEccC---CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEE
Q 014475 112 GRLLK----KWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVI 183 (424)
Q Consensus 112 ~~~~~----~~~~~~~~i~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ 183 (424)
++... .+.+|...|.+++|+|+ +++|++++.|+.|++||++++ ..+.. +.+|...|.+++|
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-----------FIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----------TCEEEECCCCSSCEEEEEE
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----------ceeeeeecCCCCceEEEEE
Confidence 87554 77889999999999999 999999999999999999652 23334 5689999999999
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCceeeeeec--------------------------CcceeEEEECCCCCEEEEEe
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--------------------------PSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~~ 237 (424)
+ ++ .+|++++.|+.|++||+++++++..+.. ...+..++|+|+++++++++
T Consensus 250 s-d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 250 G-KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp C-ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred C-CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 9 77 8999999999999999999998877752 24688999999999999999
Q ss_pred -CCCcEEEEEc--CCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCC-------CCcEEEEeCC
Q 014475 238 -RDGSIYIAAL--NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-------DGMVRVWDPI 298 (424)
Q Consensus 238 -~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~-------dg~i~iwd~~ 298 (424)
.++.|++|++ .... ....+..+..| ..|.+++|+|+.++++.+. +..|.+|.+.
T Consensus 327 ~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999999 3321 12456667777 8899999999555555443 4557888754
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.5e-33 Score=257.92 Aligned_cols=254 Identities=14% Similarity=0.207 Sum_probs=207.5
Q ss_pred CCCceEEecceeecC-CCccccCCCCceeEEEEECCC----------Cc-eeeeecCCCCeeEEEECCCCC-EEEEecCC
Q 014475 35 PPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK----------PQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQS 101 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~-~~~l~~~~~~~g~i~vwd~~~----------~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 101 (424)
|...|.+++ |+|+ +.++++++.+ |.|++|++.. .. ......|...|.+++|+|++. +|++|+.|
T Consensus 127 h~~~v~~l~--~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 127 HEGEVNRAR--YMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp ESSCCSEEE--EETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred CCCcEEEEE--ECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 456788888 9997 6788888877 9999999975 22 223456889999999999988 99999999
Q ss_pred CcEEEEEccCcce-------eeeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 102 GDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 102 g~v~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
|.|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||+++.. .......+..
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~--------~~~~~~~~~~ 275 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN--------TSKPSHTVDA 275 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC--------SSSCSEEEEC
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC--------CCcceeEeec
Confidence 9999999987422 455678999999999999 78899999999999999997631 1234555678
Q ss_pred CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-cCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCCC
Q 014475 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 250 (424)
|...|++++|+|++. ..+++++.||.|++||+++ ++++..+. |...|.+++|+|++. +|++++.|+.|++||+...
T Consensus 276 ~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999999999873 4799999999999999998 45666666 889999999999885 6899999999999999874
Q ss_pred CCCCC-----CcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC
Q 014475 251 SPSTS-----SYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH 300 (424)
Q Consensus 251 ~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~ 300 (424)
..... ......+..+.+|...|++++|+| +. +|++++.||.|++|++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 32110 001245667788999999999999 77 8999999999999998754
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.2e-32 Score=248.47 Aligned_cols=266 Identities=14% Similarity=0.104 Sum_probs=219.6
Q ss_pred ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEE
Q 014475 52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF 130 (424)
Q Consensus 52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~ 130 (424)
.+++++.+ +.|++||+.+++......+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus 4 l~vs~~~d-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSES-DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEcCCC-CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 34555555 99999999988877666666779999999999977 677789999999999999988887655 8999999
Q ss_pred ccCCcEEEEe-eCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC
Q 014475 131 SEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK 208 (424)
Q Consensus 131 ~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~ 208 (424)
+|++++++++ +.++.|++||+.++ ..+..+. +...+.+++|++++ +.+ ++++.++.|++||+.+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~-----------~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSN-----------TVAGTVK-TGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEE-CSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTT
T ss_pred CCCCCEEEEEECCCCEEEEEECCCC-----------eEEEEEe-CCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCC
Confidence 9999987554 46799999999652 2333344 34467899999998 555 7888899999999999
Q ss_pred CceeeeeecCcceeEEEECCCCCEE-EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475 209 GRLLRNIVFPSVIDAIALDPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (424)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~ 286 (424)
++.+..+.....+..++|+|+++.+ ++++.++.|++||++++ +....+. +...+.+++|+| +++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTVK-VEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSEEEEEEECTTSSEEEEE
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---------eEEEEEe-cCCCccceEECCCCCEEEEE
Confidence 9998888877788999999999887 56678899999999886 3333333 556789999999 8888888
Q ss_pred C---CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCCCCC
Q 014475 287 S---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 287 ~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~~~~ 344 (424)
+ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++++
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7 68999999999999999988765 57899999999887 6778999999999987654
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=4.4e-31 Score=238.02 Aligned_cols=278 Identities=12% Similarity=0.089 Sum_probs=206.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCe
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v 83 (424)
+||+|+ .|| ++|||+.+++........ ++..++ +.++++.++.++..+++|++||..+++......+..+|
T Consensus 33 ~la~g~-~~~-~~iw~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v 103 (355)
T 3vu4_A 33 CLILST-LKS-FEIYNVHPVAHIMSQEMR-----HLSKVR--MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV 103 (355)
T ss_dssp EEEEEC-SSE-EEEEEETTEEEEEEEECS-----CCCEEE--ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred EEEEEc-CCE-EEEEecCCcceeeeeecC-----CeEEEE--EcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence 678888 665 789999988776554322 356666 88888888654444499999999998887777788899
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccccCCeEEEEEccCCcEEEE--eeCCCcEEEEeCCcccchhcc
Q 014475 84 KPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLIS--GSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~ 160 (424)
.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .+++. |+.||.|++||++++......
T Consensus 104 ~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~ 175 (355)
T 3vu4_A 104 KDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQ 175 (355)
T ss_dssp EEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------
T ss_pred EEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccc
Confidence 999999865 3333 3789999999988 77766654 445566776 55665 688999999999764311100
Q ss_pred c----ccccce-EEeecCCcCceeEEEEEEcCceeEEEEEeCCCc-EEEEecCCCceeeeee---cCcceeEEEECCCCC
Q 014475 161 Q----RASHLY-LHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEH 231 (424)
Q Consensus 161 ~----~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~-v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~ 231 (424)
. .....+ +..+.+|...|++++|+|++ .+|++++.|++ |++||+++++++..+. |...|.+++|+|+++
T Consensus 176 ~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~ 253 (355)
T 3vu4_A 176 DQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253 (355)
T ss_dssp -----------CCEEECCCSSCEEEEEECTTS--SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC
T ss_pred cccccccccCcccEEEEccCCceEEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC
Confidence 0 001112 56788999999999999998 89999999998 9999999999999997 889999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCc--------------CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSY--------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
+|++++.|+.|++||++......... ..........+......++|++ ++.+++++.||.+++|+
T Consensus 254 ~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999998754221100 0000001111223347789999 88999999999999999
Q ss_pred CCCC
Q 014475 297 PITH 300 (424)
Q Consensus 297 ~~~~ 300 (424)
+..+
T Consensus 334 ~~~~ 337 (355)
T 3vu4_A 334 VVFD 337 (355)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 7653
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-33 Score=248.61 Aligned_cols=238 Identities=9% Similarity=-0.044 Sum_probs=190.8
Q ss_pred EECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccc
Q 014475 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL 166 (424)
Q Consensus 87 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 166 (424)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.......... ....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~--~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDS--KTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEET--TTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeec--CCcc
Confidence 345688999999999999999999999888776 467888899987 999999999999998642211111 1122
Q ss_pred eEEee-cCCcCceeEEEEEE--cCceeEEEEEeCCCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 167 YLHSF-TGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 167 ~~~~~-~~~~~~i~~~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
.+... ..|..+|.+++|+| ++ +++++++.||+|++||+++++...... +...+.+++|+|++.++++|+.||.
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred eeEEeecCCCCCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 22222 36778999999999 77 899999999999999999998866553 5567999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCee--
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVN-- 314 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~-- 314 (424)
|++||++++. .....+.. |..+|++++|+| +.+|++++ |+.|++||+++++.+..+.. |..++.
T Consensus 194 i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 194 LDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp EEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred EEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 9999999874 22245666 999999999999 99999999 55999999999887665543 444554
Q ss_pred EEEEEecCceeeeccC-CCceeeccCCCC
Q 014475 315 NILVVRRPLYLNLGSF-SNPHTSSRRHGS 342 (424)
Q Consensus 315 ~l~~s~~~~~l~~~~~-d~~i~iw~~~~~ 342 (424)
+++|+|++++|++++. |+.+++|++...
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 5999999999999888 999999998644
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=8e-31 Score=248.24 Aligned_cols=320 Identities=13% Similarity=0.086 Sum_probs=250.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEEC--CCCceeeeecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW--SKPQVEVKSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~--~~~~~~~~~~~~ 80 (424)
.++++++ .|++|.+||..+++++.++..... +..++ |+|+|+++++++.+ +.|.+||+ .+.+......+.
T Consensus 150 ~~~vs~~-~d~~V~v~D~~t~~~~~~i~~g~~----~~~v~--~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 150 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGYA----VHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp EEEEEEG-GGTEEEEEETTTCCEEEEEECSTT----EEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred EEEEEEc-CCCeEEEEECCCceEEEEEecCcc----cceEE--ECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence 4677888 899999999999999999874322 66777 99999999999998 99999999 676665555567
Q ss_pred CCeeEEEECC----CCCEEEEecC-CCcEEEEEccCcceeeeecc----------cc-CCeEEEEEccCCc-EEEEeeCC
Q 014475 81 EPIKPIAANS----HGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HY-RAVTCLVFSEDGS-FLISGSED 143 (424)
Q Consensus 81 ~~v~~~~~s~----~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~----------~~-~~i~~~~~~~~~~-~l~s~~~d 143 (424)
..+..++|+| ||+++++++. +++|.+||..+++++..+.. |. ..+..+.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 7889999999 9999999884 89999999999998887754 22 3789999999665 45667778
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCceeeeee-----c
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIV-----F 217 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~-----~ 217 (424)
+.|.+||+.+.. ...+..+ .+...+.++.|+|++ ++++ ++..+++|.+||..+++++..+. |
T Consensus 302 g~i~vvd~~~~~---------~l~~~~i-~~~~~~~~~~~spdg--~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 302 GKVLLVNYKDID---------NLTVTSI-GAAPFLHDGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp TEEEEEECTTSS---------SCEEEEE-ECCSSCCCEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred CeEEEEEecCCC---------cceeEEe-ccCcCccCceECCCC--CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 999999996621 1112223 245667889999998 6655 44568999999999999888776 3
Q ss_pred CcceeEEEECCC-CCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-------
Q 014475 218 PSVIDAIALDPA-EHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------- 287 (424)
Q Consensus 218 ~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~------- 287 (424)
+.....+ ++|+ +..++++. .|++|.+||+.+... ....++.+..+..|...+..++++| +++|++++
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence 3223333 4676 55566665 579999999987321 1222477889999998999999999 99999987
Q ss_pred CCCcEEEEeCCCCcEE-EEE--------eccCCCeeEEEEEecCceeeec-----cCCCceeeccCCCCCCC
Q 014475 288 EDGMVRVWDPITHNIV-RMF--------RLAKGPVNNILVVRRPLYLNLG-----SFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 288 ~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~~~~l~~~-----~~d~~i~iw~~~~~~~~ 345 (424)
.+++|.+||+.+++.. ..+ ..+...+..+.|+|+|+.|.++ +.|+.|.+||..+.++.
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 2779999999999877 444 2456789999999999999865 35899999999988754
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4e-30 Score=238.55 Aligned_cols=269 Identities=17% Similarity=0.162 Sum_probs=219.6
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-ecC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLP 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~ 79 (424)
.++++++ .|+.|++||+.+++....+.. ...|...+.+++ |+++++++++++.+ +.|++||+++++.... ..+
T Consensus 135 ~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~~~d-~~v~~~d~~~~~~~~~~~~~ 210 (433)
T 3bws_A 135 RLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--IPEHNELWVSQMQA-NAVHVFDLKTLAYKATVDLT 210 (433)
T ss_dssp EEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--EGGGTEEEEEEGGG-TEEEEEETTTCCEEEEEECS
T ss_pred eEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEE--EcCCCEEEEEECCC-CEEEEEECCCceEEEEEcCC
Confidence 4677888 899999999999998864432 124567788888 99999999998887 9999999998776544 357
Q ss_pred CCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--------CCCcEEEEe
Q 014475 80 AEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--------EDGCVRIWS 150 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--------~dg~i~iwd 150 (424)
...+.+++|+|+++.++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+++++++++ .||.|++||
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 88999999999999885 5557999999999999888877754 4599999999999999888 588999999
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCC
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (424)
+.++ ..... ..|...+.+++|+|++. ..+++++.++.|++||+.+++....+.+...+.+++|+|++
T Consensus 290 ~~~~-----------~~~~~-~~~~~~~~~~~~~~~g~-~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 290 MDKE-----------KLIDT-IGPPGNKRHIVSGNTEN-KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp TTTT-----------EEEEE-EEEEECEEEEEECSSTT-EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CCCC-----------cEEee-ccCCCCcceEEECCCCC-EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 9653 12222 24556788999999873 45677789999999999999999888888899999999999
Q ss_pred CEEEEEeC---------------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcEE
Q 014475 231 HVFYAGSR---------------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR 293 (424)
Q Consensus 231 ~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i~ 293 (424)
+++++++. ||.|++||..+. +.+..+.. ...+.+++|+| +++|++++ .|+.|+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 99988876 579999999886 44555544 45789999999 88888776 599999
Q ss_pred EEeCCC
Q 014475 294 VWDPIT 299 (424)
Q Consensus 294 iwd~~~ 299 (424)
+|++..
T Consensus 427 v~~~~~ 432 (433)
T 3bws_A 427 VYRRDG 432 (433)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 999763
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-31 Score=244.37 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=174.8
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceee------eecCCCCeeEEEECC--------CCCEEEEecCCCcEEEEEccC
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEV------KSLPAEPIKPIAANS--------HGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~------~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~v~iwd~~~ 111 (424)
+.+++.++++++.| ++|++||.+.++... ...|.+.|++++|+| |+++||+|+.|++|+|||+++
T Consensus 97 ~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 97 SPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred cCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 56677788888887 999999998876432 235899999999998 889999999999999999999
Q ss_pred cceeeeeccccCCeEEEEEccCCc-EEEEeeCCCcEEEEeCCcccchhcccc--------------cccceEEeecCCcC
Q 014475 112 GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQR--------------ASHLYLHSFTGHTL 176 (424)
Q Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 176 (424)
+..+..+..|..++.+++|+|++. +|++++.||.|++||++++........ ..........+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 888888888999999999999874 799999999999999987543222110 00111223457888
Q ss_pred ceeEEEEE-EcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcce------------------eEEEECC--CCCEEE
Q 014475 177 RITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVI------------------DAIALDP--AEHVFY 234 (424)
Q Consensus 177 ~i~~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i------------------~~~~~~~--~~~~l~ 234 (424)
.+.++.|. +++ ..+++++.|+++++||+..++....+. +...+ ....++| ++.+++
T Consensus 256 ~v~~v~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 256 SLANVRWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SCSEEEEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cceeeeeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 99999997 566 899999999999999998776554443 22212 2233443 344667
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
+|+.||.|++||+.++. .......|..+|.+++|+| |++||+++.+| +.+|.+
T Consensus 334 sgs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 78899999999998863 3455667889999999999 99999998776 556654
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=3.2e-30 Score=237.10 Aligned_cols=282 Identities=15% Similarity=0.054 Sum_probs=219.6
Q ss_pred CCC----ceEEEeC--CCCceE--EEeeCCCCCCCceEEecceeec--------------CCCccccCCCC--c---eeE
Q 014475 11 ADT----GIGCWDL--ESGAEQ--LRYKSCASPPHGLACVGQRFLA--------------SSQLREQPSAS--S---GSI 63 (424)
Q Consensus 11 ~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--------------~~~~l~~~~~~--~---g~i 63 (424)
.|| +|+|||+ .+++.+ ..+.++. ..+..++ +.+ .+..++.++.+ + +.|
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i 161 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAG--HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL 161 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHH--HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHH--HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence 467 8999999 999877 3465543 3444444 443 14555555443 2 799
Q ss_pred EEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC---cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEE-E
Q 014475 64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-S 139 (424)
Q Consensus 64 ~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s 139 (424)
++||.+.........|...+.+++|+|+|++|++++.++ .|++||+++++.. .+..|...+.+++|+|+++.|+ +
T Consensus 162 ~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 162 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE
Confidence 999998776666667889999999999999999998875 8999999988765 4666888999999999999887 6
Q ss_pred eeCCCc--EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC--cEEEEecCCCceeee
Q 014475 140 GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRN 214 (424)
Q Consensus 140 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~ 214 (424)
++.++. |++||+.++ ....+..|...+.+++|+|++ +.|++++. ++ .|.+||+.+++....
T Consensus 241 ~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQVYKVNINGGAPQRI 306 (415)
T ss_dssp ECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred EecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence 666655 999998652 124566788899999999998 77777775 45 677889988775443
Q ss_pred eecCcceeEEEECCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 215 IVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
..+...+..++|+|+|++|++++.+ ..|++||+.++. ...+..|. .+.+++|+| +++|++++.++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------EEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------EEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 3466788999999999999988764 589999998863 23344454 899999999 99898888776
Q ss_pred ---cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCce
Q 014475 291 ---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY 324 (424)
Q Consensus 291 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 324 (424)
.|++||+. ++....+..|.+.|.+++|+|...+
T Consensus 376 ~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 376 MGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp TEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred CccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence 79999987 6667888899999999999997543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=7e-28 Score=228.09 Aligned_cols=276 Identities=11% Similarity=0.057 Sum_probs=221.0
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc--cCcceeeeeccccC
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--ASGRLLKKWHAHYR 123 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~ 123 (424)
++|++..+++...+ ++|.+||..+++..........+..++|+|||++|++++.|+.|.+||+ .+++.+..+. +..
T Consensus 145 ~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI 222 (543)
T ss_dssp CCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred cCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence 78898888777776 9999999998887655443344899999999999999999999999999 8888888887 455
Q ss_pred CeEEEEEcc----CCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecC----------C-cCceeEEEEEEcC
Q 014475 124 AVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------H-TLRITDIVIGYGG 187 (424)
Q Consensus 124 ~i~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~ 187 (424)
.+..++|+| +++++++++. +++|.+||..++. .+..+.. | ...+..+.+++++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-----------EEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-----------cceeecccCcccCccccccCCceEEEEECCCC
Confidence 689999999 9999998884 8999999986632 2233322 2 2368889999876
Q ss_pred ceeEEEEEeCCCcEEEEecCCCceee--eeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 188 VSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
. .++++...++.|.+||+.+.+.+. .+.+...+..+.|+|+++++++++ .+++|.+||..++ +++..
T Consensus 292 ~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------~l~~~ 361 (543)
T 1nir_A 292 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSAL 361 (543)
T ss_dssp S-EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEE
T ss_pred C-EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------eEEEe
Confidence 4 677888899999999998876554 555667788999999999877665 5889999999987 44444
Q ss_pred ecc----cCcCeEEEEecC--CCEEEEeC-CCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeecc-
Q 014475 265 LSD----HSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGS- 329 (424)
Q Consensus 265 ~~~----~~~~i~~~~~~~--~~~l~t~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~- 329 (424)
+.. |......+ ++| +..++++. .|++|.+||+.+ +++++++..|.+.+..+.++|++++|.+++
T Consensus 362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 442 55444443 355 56677775 689999999998 899999999998999999999999999987
Q ss_pred ------CCCceeeccCCCCCCC
Q 014475 330 ------FSNPHTSSRRHGSQLP 345 (424)
Q Consensus 330 ------~d~~i~iw~~~~~~~~ 345 (424)
.+++|.+||+.+.+..
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcccCceEEEEECCCCCCC
Confidence 3789999999988754
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.9e-27 Score=205.15 Aligned_cols=234 Identities=14% Similarity=0.057 Sum_probs=171.0
Q ss_pred ceEEEeCCCCceEEEeeCC-----------CCCCCceEEecceeecC----CCccccCCCCceeEEEEECCCCceeeeec
Q 014475 14 GIGCWDLESGAEQLRYKSC-----------ASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKSL 78 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~----~~~l~~~~~~~g~i~vwd~~~~~~~~~~~ 78 (424)
.++-|.......+...... .-+...|.+++ ++|+ ++.+++++ ..+.+|++
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla--~spd~~~~~~~l~s~g---~~~~v~~l---------- 142 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF--CSSDDESEKQVLLKSG---NIKAVLGL---------- 142 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC--C------CCEEEEEEE---EEEEEEEE----------
T ss_pred eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE--ECCCccccccEEEeCC---CeEEEEec----------
Confidence 5677776654444332221 12345678888 9999 88888866 34777753
Q ss_pred CCCCeeEEEECCCCCEEEEec--CCCcEEEEEc-cCcceeeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCC
Q 014475 79 PAEPIKPIAANSHGTYIAGGG--QSGDIYMWEV-ASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~ 152 (424)
++++.+.+++ .|+.|++|++ .+++.+..+..|...++.++|+| ++..|++++.|++|+|||+.
T Consensus 143 -----------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 143 -----------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp -----------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred -----------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 4566666643 5889999999 45788888889999999999999 77999999999999999996
Q ss_pred cccchhcccccccceEEeecCCc---CceeEEEEEEcCceeEE------------EEEeCCCcEEEEecCCCceeeeee-
Q 014475 153 TVFEECESQRASHLYLHSFTGHT---LRITDIVIGYGGVSATI------------VSASEDRTCKVWSLLKGRLLRNIV- 216 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l------------~~~~~d~~v~iwd~~~~~~~~~~~- 216 (424)
+ ...++++.+|. ..+.+++|+|++ .++ ++|+.|++|++||..+++.+..+.
T Consensus 212 T-----------Gk~l~tL~g~~~~v~~v~~vafSpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 212 T-----------GQLLKKMHIDDSYQASVCHKAYSEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp T-----------CCEEEEEECCC---CCCEEEEEEETT--EEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred C-----------CcEEEEEcCCCcceeeeEEEEECCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 5 34566666543 467777899988 665 668899999999999998876552
Q ss_pred -----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE-EEEecC-CCEEEEeCCC
Q 014475 217 -----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYST-GDLLISGSED 289 (424)
Q Consensus 217 -----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~-~~~l~t~~~d 289 (424)
+...+. ..+.++.++++++.|++|++||+.++ +.+.++.+|...+. .++|+| +++|++|+.|
T Consensus 279 ~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D 347 (356)
T 2w18_A 279 CLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKD 347 (356)
T ss_dssp CCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECSSSSEEEEECTT
T ss_pred eccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECCCCCEEEEEECC
Confidence 222232 23334778999999999999999997 67788888887655 589999 9999999999
Q ss_pred CcEEEEeC
Q 014475 290 GMVRVWDP 297 (424)
Q Consensus 290 g~i~iwd~ 297 (424)
++|+|||+
T Consensus 348 ~TIklWd~ 355 (356)
T 2w18_A 348 GNIFVYHY 355 (356)
T ss_dssp SCEEEEEE
T ss_pred CcEEEecC
Confidence 99999995
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=8.8e-28 Score=238.00 Aligned_cols=311 Identities=11% Similarity=0.083 Sum_probs=232.3
Q ss_pred EEeecCCC-CC-----ceEEEeCCCCceEEEeeCCCCCC---------------------CceEEecceeecCCCccccC
Q 014475 4 LIASSSVA-DT-----GIGCWDLESGAEQLRYKSCASPP---------------------HGLACVGQRFLASSQLREQP 56 (424)
Q Consensus 4 ~lat~~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~ 56 (424)
+||+++ . || .|++||+.+++....+..+.... ..+..++ |+|||++|+++
T Consensus 50 ~la~~~-~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~ 126 (741)
T 2ecf_A 50 RVTFLR-GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ--WSPDAQRLLFP 126 (741)
T ss_dssp EEEEEE-CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE--ECTTSSEEEEE
T ss_pred EEEEEe-ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE--ECCCCCEEEEE
Confidence 567777 5 88 89999999998877665432210 2356667 99999999988
Q ss_pred CCCceeEEEEECCCC---ceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCC---------
Q 014475 57 SASSGSILYWSWSKP---QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--------- 124 (424)
Q Consensus 57 ~~~~g~i~vwd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------- 124 (424)
+. +.|.+||+.++ +......+...+..++|||||++|+.++ ++.|++||+.+++.......+...
T Consensus 127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v 203 (741)
T 2ecf_A 127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFV 203 (741)
T ss_dssp ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHH
T ss_pred eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecccccee
Confidence 86 89999999987 6555556778899999999999999987 468999999988766554444332
Q ss_pred -------eEEEEEccCCcEEEEeeCCC---------------------------------cEEEEeCCc-ccchhccccc
Q 014475 125 -------VTCLVFSEDGSFLISGSEDG---------------------------------CVRIWSLLT-VFEECESQRA 163 (424)
Q Consensus 125 -------i~~~~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~ 163 (424)
+..+.|+|||++|++++.|+ .|.+||+.+ +..
T Consensus 204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~------- 276 (741)
T 2ecf_A 204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT------- 276 (741)
T ss_dssp HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-------
T ss_pred eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-------
Confidence 47899999999999988765 788888854 321
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-----CCcEEEEecCCCceeeeeecCc-----ceeEEEECCCCCEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLKGRLLRNIVFPS-----VIDAIALDPAEHVF 233 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l 233 (424)
..+.....|...+..++| |++ +.|++++. +..|.+||+.+++....+.... .+..++|+|+|+++
T Consensus 277 --~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 277 --QWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp --EEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred --EEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 011111247788999999 999 67776553 5679999999998776665322 45689999999999
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE-EecC-CCEEE-EeCCCC--cEEEEeCCC-CcEEEEEe
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYST-GDLLI-SGSEDG--MVRVWDPIT-HNIVRMFR 307 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~-~~~l~-t~~~dg--~i~iwd~~~-~~~~~~~~ 307 (424)
++++.+|.+++|.++... . ...+..|...+..+ .|+| ++.|+ +++.++ .++||++.. +.....+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 999999988888887432 3 45666777888887 5999 77664 555565 899999864 55566666
Q ss_pred ccCCCeeEEEEEecCceeeeccCC----CceeeccCCCC
Q 014475 308 LAKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGS 342 (424)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~~~d----~~i~iw~~~~~ 342 (424)
. ...+..++|+|||++|+....+ ..+.+|+..+.
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5 6678899999999998765433 45777876543
No 131
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=5.9e-28 Score=237.89 Aligned_cols=309 Identities=13% Similarity=0.086 Sum_probs=221.1
Q ss_pred EeecCCCCCceEEEeCCCCceE-EEeeCCCC--------------CCCceEEecceeecCCCccccCCCCceeEEEEECC
Q 014475 5 IASSSVADTGIGCWDLESGAEQ-LRYKSCAS--------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWS 69 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~-~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~ 69 (424)
+++++ .|| | +||+.+|+.+ ..+..+.. +...+.+++ |+|+ +.++.+. + +.|.+||+.
T Consensus 38 ~~~~~-~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~spd-~~~~~~~-~-~~i~~~d~~ 109 (706)
T 2z3z_A 38 YVFIE-GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL--DAGR-GLVVLFT-Q-GGLVGFDML 109 (706)
T ss_dssp EEEEE-TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE--ETTT-TEEEEEE-T-TEEEEEETT
T ss_pred EEEEe-CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE--ECCC-CeEEEEE-C-CEEEEEECC
Confidence 34455 567 8 9999999873 33332211 114578888 9999 6655553 3 899999999
Q ss_pred CCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----cceeeeeccccCC--------------eEEEEE
Q 014475 70 KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----GRLLKKWHAHYRA--------------VTCLVF 130 (424)
Q Consensus 70 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--------------i~~~~~ 130 (424)
+++......+...+.+++|||||++|+++ .++.|++||+.+ ++.......+... +.++.|
T Consensus 110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~ 188 (706)
T 2z3z_A 110 ARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW 188 (706)
T ss_dssp TTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred CCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence 88776666677889999999999999985 679999999998 7766544444333 488999
Q ss_pred ccCCcEEEEee---------------------------------CCCcEEEEeCCcccchhcccccccceEEeecCCcCc
Q 014475 131 SEDGSFLISGS---------------------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (424)
Q Consensus 131 ~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (424)
+|||++|++++ .+..|++||+.++.. ..+.....|...
T Consensus 189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---------~~~~~~~~~~~~ 259 (706)
T 2z3z_A 189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---------VYLQTGEPKEKF 259 (706)
T ss_dssp CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---------EECCCCSCTTCE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---------EeeccCCCCcee
Confidence 99999999987 446799999966321 111112256778
Q ss_pred eeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee---cCc---ceeEEEECC--CCCEEEEEeCCCcEEE
Q 014475 178 ITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV---FPS---VIDAIALDP--AEHVFYAGSRDGSIYI 244 (424)
Q Consensus 178 i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i 244 (424)
+.+++|+|++ +.|++++.++ .|.+||+.+++....+. ... .+..++|+| ++++++++..++.+++
T Consensus 260 ~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 260 LTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp EEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred EeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 9999999998 7888877665 89999999984333332 222 246789999 9999999999999999
Q ss_pred EEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecC-CCEEEE-eCCCC----cEEEEeCCCCcEEEEEeccCCCeeEEE
Q 014475 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLIS-GSEDG----MVRVWDPITHNIVRMFRLAKGPVNNIL 317 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~l~t-~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~ 317 (424)
|.++... .....+..|...+.. ++|+| ++.|+. ++.++ .|..||+.+++ ...+. |...+.+++
T Consensus 338 ~~~~~~~--------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~ 407 (706)
T 2z3z_A 338 YLYDTTG--------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQ 407 (706)
T ss_dssp EEEETTS--------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEE
T ss_pred EEEECCC--------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEE
Confidence 9887322 345566677777877 79999 776654 44554 67778877765 44444 667899999
Q ss_pred EEecCceeeeccCC----CceeeccCCCCC
Q 014475 318 VVRRPLYLNLGSFS----NPHTSSRRHGSQ 343 (424)
Q Consensus 318 ~s~~~~~l~~~~~d----~~i~iw~~~~~~ 343 (424)
|+|||++|+....+ +.+.+|++.+++
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99999998876443 459999988764
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=6.1e-28 Score=221.86 Aligned_cols=277 Identities=12% Similarity=0.021 Sum_probs=211.0
Q ss_pred ceEEecceeecCCCccc-cCC---CCce----eEEEEEC--CCCceee---eecCCCCeeEEEECC--------------
Q 014475 38 GLACVGQRFLASSQLRE-QPS---ASSG----SILYWSW--SKPQVEV---KSLPAEPIKPIAANS-------------- 90 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~-~~~---~~~g----~i~vwd~--~~~~~~~---~~~~~~~v~~~~~s~-------------- 90 (424)
.+...+ |.+.|..++ +++ ..+| .|++||+ .+++... ...|...+..+++++
T Consensus 64 ~~~~~~--w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 64 EVQPAA--WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GCCHHH--HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcCHHH--HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 455555 777776555 443 1236 8999999 7776542 244666677776664
Q ss_pred CCCEEEEecCC------CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC---cEEEEeCCcccchhccc
Q 014475 91 HGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQ 161 (424)
Q Consensus 91 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~ 161 (424)
.+..++.++.+ +.|++||+. +.....+..|...+.+++|+|++++|++++.++ .|++||+.++.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~------ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------ 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc------
Confidence 25566665554 789999997 455677788999999999999999999999875 99999996631
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCc--EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
...+..|...+.+++|+|++ +.|+ +++.++. |.+||+.+++......+...+.+++|+|+++.|++++.
T Consensus 215 ------~~~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 215 ------VRQVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ------EEEEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ------EEEeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence 12455677889999999998 6666 6666655 99999998887554457788999999999999988876
Q ss_pred -CC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC---CcEEEEeCCCCcEEEEEeccCC
Q 014475 239 -DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 239 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~ 311 (424)
++ .|++||+.++. ...+..|...+.+++|+| +++|++++.+ ..|++||+.+++.. .+..+.
T Consensus 287 ~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~- 354 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF- 354 (415)
T ss_dssp TTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred CCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence 44 67777887753 233445667889999999 8988888754 58999999988764 455554
Q ss_pred CeeEEEEEecCceeeeccCCC---ceeeccCCCCC
Q 014475 312 PVNNILVVRRPLYLNLGSFSN---PHTSSRRHGSQ 343 (424)
Q Consensus 312 ~v~~l~~s~~~~~l~~~~~d~---~i~iw~~~~~~ 343 (424)
.+.+++|+|+|++|++++.++ .|++|++.+..
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 899999999999999988877 79999987553
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=8.4e-27 Score=204.38 Aligned_cols=251 Identities=17% Similarity=0.082 Sum_probs=194.8
Q ss_pred ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-cceeeeeccc-cCCeEEEEEccCCcEE
Q 014475 60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-YRAVTCLVFSEDGSFL 137 (424)
Q Consensus 60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~-~~~i~~~~~~~~~~~l 137 (424)
++.|++||+.+++......|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 4999999999988777777889999999999999999976 78999999998 8777666555 3678899999999999
Q ss_pred EEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecC--CCcee
Q 014475 138 ISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLL--KGRLL 212 (424)
Q Consensus 138 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~--~~~~~ 212 (424)
++++ .++...+|.++.. .. ....+..+ ..+..++|+|++ +.++ +++.++.+++|+++ +++..
T Consensus 100 ~~~~~~~~~~~~l~~~~~~---------~~-~~~~~~~~-~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPST---------GG-TPRLMTKN-LPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EEEECTTTSSCEEEEEETT---------CC-CCEECCSS-SSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEeCCCCcceEEEEECC---------CC-ceEEeecC-CCccceEECCCC--CEEEEEECCCCceEEEEEECCCCcce
Confidence 9998 3455666655321 11 12223333 348889999998 5555 78889999999864 44444
Q ss_pred eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCC-
Q 014475 213 RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED- 289 (424)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d- 289 (424)
....+...+.+++|+|+++.+++++ .++.+.+|+++... .....+..|...+..++|+| +++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 4444778899999999999888766 58899999987432 33456667788899999999 8888888765
Q ss_pred ----------CcEEEEeCCCCcE--EEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 290 ----------GMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 290 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
+.|.+||+.+++. +..+..|...+..++|+|++++|++++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 444557888999999999999998887654
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.4e-25 Score=200.23 Aligned_cols=281 Identities=8% Similarity=-0.014 Sum_probs=202.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce-eee-ecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVK-SLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~-~~~-~~~~ 80 (424)
.++++.+ .++.|.+||.++++....+..+ .... .++ |+|+++.+++++..++.|.+||..+++. ... ..+.
T Consensus 11 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 11 FGIVVEQ-HLRRISFFSTDTLEILNQITLG---YDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp EEEEEEG-GGTEEEEEETTTCCEEEEEECC---CCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EEEEEec-CCCeEEEEeCcccceeeeEEcc---CCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 4567777 8999999999999998887643 2334 777 9999998777776559999999998875 333 3344
Q ss_pred CCeeEEEECCCCCEEEEecCCC---cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe-eCCCc-EEEEeCCccc
Q 014475 81 EPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGC-VRIWSLLTVF 155 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~~dg~-i~iwd~~~~~ 155 (424)
.+..+++|+|++++++++..++ .|.+||+.+++.+..+..+ ..+.+++|+|++++++++ ..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 5555599999999999665553 8999999999888777643 457999999999865554 55588 9999986421
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCCCce---eeeeecCcceeEEEECCCCC
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~ 231 (424)
.... .. ...+ ........++|+|++ +++ +++..++.|.+||+.+++. +..+.....+..++|+|+++
T Consensus 163 ~~~~-----~~-~~~~-~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 163 VLFD-----TG-QEFI-SGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp CEEE-----EE-EEEE-CSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred cEee-----cC-Cccc-cCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 1000 00 1112 334557899999998 544 5555789999999999988 77777778889999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeeccc----C---cCeEEEEecC-CCEEE-EeCCCCcEEEEeCCCCc
Q 014475 232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH----S---KAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHN 301 (424)
Q Consensus 232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~---~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~~~~ 301 (424)
+++++. .++.|.+||..++.. ..+..+..+ . .....++|+| +++|+ ++..++.|.+||+....
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTL-------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEE-------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEEcCCCEEEEEECCCCce-------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 877665 477899999987642 112222111 2 2235689999 77765 45567799999998643
Q ss_pred EEEEEec
Q 014475 302 IVRMFRL 308 (424)
Q Consensus 302 ~~~~~~~ 308 (424)
+..+..
T Consensus 307 -~~~~~~ 312 (331)
T 3u4y_A 307 -VGYVAG 312 (331)
T ss_dssp -EEECTT
T ss_pred -ccceec
Confidence 333433
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.8e-25 Score=200.38 Aligned_cols=297 Identities=11% Similarity=0.124 Sum_probs=200.9
Q ss_pred EEEeecCCCCCceEEEeCC-CCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceee--
Q 014475 3 LLIASSSVADTGIGCWDLE-SGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV-- 75 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~-- 75 (424)
.++++++ .|+.|++||+. +++ .+..+. +...+.+++ |+|+++++++++.+++.|.+|+++ +++...
T Consensus 6 ~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 78 (343)
T 1ri6_A 6 TVYIASP-ESQQIHVWNLNHEGALTLTQVVD----VPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 78 (343)
T ss_dssp EEEEEEG-GGTEEEEEEECTTSCEEEEEEEE----CSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEEeCC-CCCeEEEEEECCCCcEEEeeeEe----cCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence 3445546 79999999985 342 333332 234456667 999999988888766999999997 444332
Q ss_pred eecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEcc---CcceeeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEe
Q 014475 76 KSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVA---SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWS 150 (424)
Q Consensus 76 ~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd 150 (424)
.......+..++|+|+++++++++ .++.|.+||+. +.+....+..+ ..+.+++|+|+++++++++ .++.|.+||
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 222344889999999999886665 47889999994 44445555433 4588999999999888877 889999999
Q ss_pred CCcccchhcccccccceEE--eec-CCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCC--Cce--eeeee-c----
Q 014475 151 LLTVFEECESQRASHLYLH--SFT-GHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLK--GRL--LRNIV-F---- 217 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~--~~~--~~~~~-~---- 217 (424)
+.+.. ...... ... .....+..++|+|++ ++++ ++..++.+.+||+.. ++. ...+. .
T Consensus 158 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 158 VSDDG--------HLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp ECTTS--------CEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred ecCCC--------ceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 96411 001111 122 233467889999998 6554 455889999999953 432 22222 1
Q ss_pred --CcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-CCCcE
Q 014475 218 --PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMV 292 (424)
Q Consensus 218 --~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~dg~i 292 (424)
...+..++|+|++++++++. .++.|.+||+...... .+.+..+..+.. +..++|+| +++|++++ .++.|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence 23466899999999887554 7899999999842110 134444444444 88999999 88777777 68999
Q ss_pred EEE--eCCCCc--EEEEEeccCCCeeEEEEEecCce
Q 014475 293 RVW--DPITHN--IVRMFRLAKGPVNNILVVRRPLY 324 (424)
Q Consensus 293 ~iw--d~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ 324 (424)
.+| |..+++ .+..+.. .....+++|.|+.+.
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC--
T ss_pred EEEEEcCCCceeeEcccccc-CCCCeeEEEEcccCC
Confidence 999 555664 3444543 245678888886543
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=1.3e-25 Score=200.76 Aligned_cols=275 Identities=13% Similarity=0.038 Sum_probs=203.1
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC-
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE- 81 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~- 81 (424)
.+|++++ .+++|.+||+.+++.+..+...... ..+..++ |+|+++.+++++..++.|.+||..+++.........
T Consensus 2 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADAG-PTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEE-TTTEEEEEETTTTEEEEEEECTTCT-TCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcC-CCCeEEEEECCCCcEEEEEEcCCCC-CCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 4688888 8999999999999998887643210 0244555 999998776665555999999998887654433322
Q ss_pred -----CeeEEEECCCCCEEEEec------------CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC
Q 014475 82 -----PIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG 144 (424)
Q Consensus 82 -----~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg 144 (424)
.+..++|+|+|++++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 678999999999998885 579999999999888777764 4567889999999988887 68
Q ss_pred cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CC-----------------------c
Q 014475 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR-----------------------T 200 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~-----------------------~ 200 (424)
.|.+||+.++. ....+..+.. ...+.|+|++ ..++..+. ++ .
T Consensus 155 ~i~~~d~~~~~-----------~~~~~~~~~~-~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 155 DLHVMDPEAGT-----------LVEDKPIQSW-EAETYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp SEEEEETTTTE-----------EEEEECSTTT-TTTTBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred eEEEEECCCCc-----------Eeeeeecccc-CCCceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 89999996632 2222222220 0122567766 44433332 22 4
Q ss_pred EEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEe
Q 014475 201 CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 277 (424)
|.+||+.+++.. .+. +...+..++|+|++++++++ ++.|++||+.+. +.+..+.. ...+.+++|
T Consensus 221 v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~ 287 (337)
T 1pby_B 221 LLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRVPL-PHSYYSVNV 287 (337)
T ss_dssp EEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEEEC-SSCCCEEEE
T ss_pred eEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------cCcceecC-CCceeeEEE
Confidence 789999988765 332 45567889999999999988 789999999875 33444432 356789999
Q ss_pred cC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 278 ~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (424)
+| +++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 99 88888889999999999999999988876543
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=7.4e-26 Score=202.92 Aligned_cols=275 Identities=13% Similarity=0.135 Sum_probs=192.0
Q ss_pred CccccCCCCceeEEEEECCC-Cc--eeeeecCCCCeeEEEECCCCCEEEEecCC-CcEEEEEcc--Ccc--eeeeecccc
Q 014475 51 QLREQPSASSGSILYWSWSK-PQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVA--SGR--LLKKWHAHY 122 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~-~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iwd~~--~~~--~~~~~~~~~ 122 (424)
+++++++..++.|.+|+++. ++ ......+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 34444533349999999963 32 22334577789999999999988888776 899999997 554 334444433
Q ss_pred CCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCc
Q 014475 123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT 200 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~ 200 (424)
.+..++|+|+++++++++. ++.|.+||+.++. .......+.. ...+.+++|+|++ +.+++++ .++.
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~~~~ 152 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL--------PVGVVDVVEG-LDGCHSANISPDN--RTLWVPALKQDR 152 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE--------EEEEEEEECC-CTTBCCCEECTTS--SEEEEEEGGGTE
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc--------cccccccccC-CCCceEEEECCCC--CEEEEecCCCCE
Confidence 7899999999998876665 8889999984210 1122233333 3458889999998 6677666 8999
Q ss_pred EEEEecCC-Cceee----eee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecc---cC
Q 014475 201 CKVWSLLK-GRLLR----NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD---HS 269 (424)
Q Consensus 201 v~iwd~~~-~~~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~ 269 (424)
|.+||+.+ ++... ... ....+..++|+|+++++++++ .++.+.+|+++....... .......+.. ..
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCCSC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccccc
Confidence 99999987 65432 222 345788999999999776655 789999999965221100 0011111111 13
Q ss_pred cCeEEEEecC-CCEEE-EeCCCCcEEEEeCC----CCcEEEEEeccCCCeeEEEEEecCceeeecc-CCCceeeccCC
Q 014475 270 KAVTCLAYST-GDLLI-SGSEDGMVRVWDPI----THNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~-t~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~ 340 (424)
..+..++|+| +++|+ ++..++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.+.+|++.
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 4577899999 77666 56689999999998 3345556665544 89999999999887776 68999999665
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.3e-25 Score=229.98 Aligned_cols=317 Identities=11% Similarity=0.057 Sum_probs=237.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-----ceeEEEEECCCCceeeeec
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVEVKSL 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-----~g~i~vwd~~~~~~~~~~~ 78 (424)
.||.++ ++.|.+|++..++.. .+.. |...+.+++ |+|||+.||.++.+ +..|.+|+..+++......
T Consensus 26 ~iaf~~--~~~l~~~~~~gg~~~-~lt~---~~~~v~~~~--~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~ 97 (1045)
T 1k32_A 26 RIIFVC--CDDLWEHDLKSGSTR-KIVS---NLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY 97 (1045)
T ss_dssp EEEEEE--TTEEEEEETTTCCEE-EEEC---SSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred EEEEEE--CCcEEEEECCCCcEE-Eeee---CCCcccCeE--ECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEccc
Confidence 355555 368999999877654 4544 446788888 99999999987532 2589999999887666666
Q ss_pred CCCCe-------eEEEECCCCCEEEEecCC------CcEEEEEccCccee------------------------------
Q 014475 79 PAEPI-------KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL------------------------------ 115 (424)
Q Consensus 79 ~~~~v-------~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~------------------------------ 115 (424)
|...+ ..++|+|||+++++++.+ ..|++|++.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 98 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred CCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 77777 899999999977777644 35888887665422
Q ss_pred -------------------eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc-chhccc------------cc
Q 014475 116 -------------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF-EECESQ------------RA 163 (424)
Q Consensus 116 -------------------~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~------------~~ 163 (424)
..+.+|...+.++.|+++ ..+++++.++.+.+|.+.... ...... ..
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG 256 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDG 256 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESS
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCC
Confidence 112346677888999887 667778888999999764211 100000 00
Q ss_pred c----------------cceEEeecC-----------CcCceeEEEEE-EcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 164 S----------------HLYLHSFTG-----------HTLRITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 164 ~----------------~~~~~~~~~-----------~~~~i~~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
. ...+..+.. |...+.+++|+ |++ +.+++++ ++.+.+|++..++.....
T Consensus 257 ~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG--~~la~~~-~~~i~~~~~~~~~~~~~~ 333 (1045)
T 1k32_A 257 RRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKVP 333 (1045)
T ss_dssp SCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG--GCEEEEE-TTEEEEECTTSSBEEECS
T ss_pred CEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC--CEEEEEE-cCEEEEEcCCCCceEEcc
Confidence 0 000111122 23368899999 998 7777777 789999999887765544
Q ss_pred ecCc-ceeEEEECCCCCEEEEEeCCCcEE-EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475 216 VFPS-VIDAIALDPAEHVFYAGSRDGSIY-IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (424)
Q Consensus 216 ~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i 292 (424)
.+.. .+..++|+ +++.++.++.++.+. +|++..+. ...+.+|...+..++|+| +++|++++.++.|
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----------ceEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence 4666 89999999 999999998888888 88987753 223337778999999999 9999999999999
Q ss_pred EEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC----------ceeeccCCCCC
Q 014475 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN----------PHTSSRRHGSQ 343 (424)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~----------~i~iw~~~~~~ 343 (424)
++||+.+++....+..|.+.+..++|+|||++|++++.++ .|++|++.+++
T Consensus 403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999999998888878999999999999999999887654 89999998765
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=6e-25 Score=197.89 Aligned_cols=268 Identities=10% Similarity=0.090 Sum_probs=209.2
Q ss_pred ceEEecceeecCCCccccCCCC------ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEE-EecCCCcEEEEEcc
Q 014475 38 GLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVA 110 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~------~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~ 110 (424)
.+..++ |+|+++.+++++.+ ++.|.+||..+++..........+..++|+|++++++ +...++.|.+||..
T Consensus 42 ~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 42 GAYEMA--YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SEEEEE--EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccceE--ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 456677 99999988887743 4899999999888766655566788999999999555 45567999999999
Q ss_pred CcceeeeeccccCC---------eEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccceEEeecCCcCcee
Q 014475 111 SGRLLKKWHAHYRA---------VTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (424)
Q Consensus 111 ~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (424)
+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+ ......+..+...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-----------IKLKTAIQNTGKMST 188 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-----------TEEEEEECCCCTTCC
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-----------CceEEEecCCCCccc
Confidence 99988877654432 78899999999877776 478899999965 233444544555678
Q ss_pred EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCC
Q 014475 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPS 253 (424)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 253 (424)
+++|++++ +.+++++.++.|.+||+.+++....+.. ...+..++|+|+++.+++++. ++.|.+||..++.
T Consensus 189 ~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-- 264 (353)
T 3vgz_A 189 GLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-- 264 (353)
T ss_dssp CCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--
T ss_pred eEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence 89999998 7888888999999999999998877763 345778999999998777765 4899999998763
Q ss_pred CCCcCceeeeeecccCcCeEEEEecC-CCE-EEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDL-LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
.+..+..+. ...++|+| +++ +++...++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..+
T Consensus 265 -------~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 265 -------ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -------EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred -------EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 333333322 25689999 774 455557999999999999999888754 467999999999988777655
Q ss_pred C
Q 014475 332 N 332 (424)
Q Consensus 332 ~ 332 (424)
+
T Consensus 335 ~ 335 (353)
T 3vgz_A 335 K 335 (353)
T ss_dssp C
T ss_pred c
Confidence 4
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=2.7e-26 Score=226.79 Aligned_cols=299 Identities=11% Similarity=0.053 Sum_probs=210.3
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--------ceeEEEEECCCCceeee
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVK 76 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--------~g~i~vwd~~~~~~~~~ 76 (424)
+++ + .||+|++||+.+++....+..+......+..++ |+|||++|++++.+ ++.+.+||+.+++....
T Consensus 31 ~~~-~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 106 (723)
T 1xfd_A 31 IYR-E-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL 106 (723)
T ss_dssp CCC-C-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred EEE-e-CCCCEEEEECCCCcEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec
Confidence 444 6 799999999999998877766543323577788 99999999988653 27899999998875322
Q ss_pred ec---CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe------------------EEEEEccCCc
Q 014475 77 SL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV------------------TCLVFSEDGS 135 (424)
Q Consensus 77 ~~---~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i------------------~~~~~~~~~~ 135 (424)
.. +...+..++|||||+.||.++. +.|++||+.+++.......+...+ .++.|+|||+
T Consensus 107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence 22 3335899999999999999875 799999999888766655544433 7899999999
Q ss_pred EEEEeeCCC----------------------------------cEEEEeCCcccchhcccccccceEEeecC------Cc
Q 014475 136 FLISGSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTG------HT 175 (424)
Q Consensus 136 ~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~ 175 (424)
+|++++.|+ .|++||+.++.. ...+.. +.
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-----------~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-----------DLEMMPPDDPRMRE 254 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-----------CEECCCCCCGGGSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-----------eEEeeCCccCCCcc
Confidence 999887553 688888865321 122222 36
Q ss_pred CceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCceeeeee--cCcce----eEEEECCCCCEEEE--EeCCC---
Q 014475 176 LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIV--FPSVI----DAIALDPAEHVFYA--GSRDG--- 240 (424)
Q Consensus 176 ~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~--~~~~i----~~~~~~~~~~~l~~--~~~dg--- 240 (424)
..+..++|+|++ +++++... +..|.+||+.+++....+. +...+ ..++|+|+|+.|+. +..++
T Consensus 255 ~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 255 YYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp EEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 778999999998 77766643 3579999999988766554 23333 37899999997775 44566
Q ss_pred ---cEEEEEc-CCCCCCCCCcCceeeeeecccCcCeEE-EEecC-CCEEEEeCC-C--CcEEEEeCCCCc--EEEEEec-
Q 014475 241 ---SIYIAAL-NAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISGSE-D--GMVRVWDPITHN--IVRMFRL- 308 (424)
Q Consensus 241 ---~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~l~t~~~-d--g~i~iwd~~~~~--~~~~~~~- 308 (424)
.|++||. ..+.. .....+..+...+.. ++|+| ++.|+..+. + +.+++|++.... ....+..
T Consensus 333 ~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp CEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred ceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 4666663 33210 002223333344444 68999 888865544 4 789999986432 3344443
Q ss_pred --cCCCeeEEEEEecCceeeec
Q 014475 309 --AKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 309 --~~~~v~~l~~s~~~~~l~~~ 328 (424)
|...+..++|+|||++|+..
T Consensus 406 ~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 406 LVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SSSSCCCCEEEECTTSSEEEEE
T ss_pred ccCCCCeEEEEECCCCCEEEEE
Confidence 56778999999999988764
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=5.3e-26 Score=225.27 Aligned_cols=277 Identities=9% Similarity=-0.000 Sum_probs=210.2
Q ss_pred CCceEEecceeecCCCccccCCC-Cce-----eEEEEECCCCceeeeec-CC------------------------CCee
Q 014475 36 PHGLACVGQRFLASSQLREQPSA-SSG-----SILYWSWSKPQVEVKSL-PA------------------------EPIK 84 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~-~~g-----~i~vwd~~~~~~~~~~~-~~------------------------~~v~ 84 (424)
...+..++ |+|||++|++++. + + .|.+||+.+++...... +. ..+.
T Consensus 36 ~~~~~~~~--~SpdG~~la~~~~~d-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPK--VAPDGSRVTFLRGKD-SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEE--ECTTSSEEEEEECCS-SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCce--EecCCCEEEEEeccC-CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 35577888 9999999999987 5 6 99999999887543332 21 2388
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEccCcc--eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 85 PIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 85 ~~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|+.++. +.|++||+.++..
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~------ 184 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ------ 184 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE------
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE------
Confidence 9999999999999876 899999998873 45567778888999999999999998874 5899999966321
Q ss_pred cccceEEeecCCcC----------------ceeEEEEEEcCceeEEEEEeCCC---------------------------
Q 014475 163 ASHLYLHSFTGHTL----------------RITDIVIGYGGVSATIVSASEDR--------------------------- 199 (424)
Q Consensus 163 ~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~~~l~~~~~d~--------------------------- 199 (424)
......+.. .+..+.|+|++ +.|++++.|+
T Consensus 185 -----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 185 -----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp -----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred -----EEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 111111221 24789999999 7888887665
Q ss_pred ------cEEEEecCC-Cceeeee---ecCcceeEEEECCCCCEEEEEeC-----CCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 200 ------TCKVWSLLK-GRLLRNI---VFPSVIDAIALDPAEHVFYAGSR-----DGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 200 ------~v~iwd~~~-~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
.|.+||+.+ ++..... .+...+..++| |+|+.|++++. +..|++||+.++. ....
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~ 327 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVL 327 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEE
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------eEEE
Confidence 788999988 7755433 25578899999 99999987764 5679999998863 2233
Q ss_pred ecccCc----CeEEEEecC-CCEEEEeCCCCcEEEEeCC-CCcEEEEEeccCCCeeEE-EEEecCceee-eccCCC--ce
Q 014475 265 LSDHSK----AVTCLAYST-GDLLISGSEDGMVRVWDPI-THNIVRMFRLAKGPVNNI-LVVRRPLYLN-LGSFSN--PH 334 (424)
Q Consensus 265 ~~~~~~----~i~~~~~~~-~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~s~~~~~l~-~~~~d~--~i 334 (424)
+..+.. .+..++|+| ++++++++.||.++||.+. +++ ...+..|...+..+ .|+|+++.|+ +++.++ .+
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 333332 456889999 8899999999988888765 455 77888888888887 5999998775 455555 89
Q ss_pred eeccCCC
Q 014475 335 TSSRRHG 341 (424)
Q Consensus 335 ~iw~~~~ 341 (424)
++|++..
T Consensus 407 ~l~~~~~ 413 (741)
T 2ecf_A 407 QIYAVPL 413 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9998863
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=6.7e-25 Score=195.85 Aligned_cols=277 Identities=12% Similarity=0.111 Sum_probs=197.2
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeee-cCCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcce-eeeecccc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRL-LKKWHAHY 122 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~-~~~~~~~~ 122 (424)
|.++++.++++...++.|.+||..+++..... .+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 56666665555544599999999988775443 345556 9999999997666555 88999999999987 77777676
Q ss_pred CCeEEEEEccCCcEEEEeeCCC---cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475 123 RAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~ 199 (424)
.+..+++|+|++++++++..++ .|.+||+.++ ..+..+.. .....+++|+|++. ..+++...++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~spdg~-~l~~~~~~~~ 150 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-----------KFISTIPI-PYDAVGIAISPNGN-GLILIDRSSA 150 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-----------EEEEEEEC-CTTEEEEEECTTSS-CEEEEEETTT
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCC-----------CeEEEEEC-CCCccceEECCCCC-EEEEEecCCC
Confidence 6666699999999998665553 8999999653 22333333 33458999999983 3455556668
Q ss_pred c-EEEEecCCCcee-----eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 200 T-CKVWSLLKGRLL-----RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 200 ~-v~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
. +.+|++.....+ ..+.....+..++|+|+++++++++ .++.|++||+.++... ..+..+. ....+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~------~~~~~~~-~~~~~ 223 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI------TLLNAVG-TNNLP 223 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC------EEEEEEE-CSSCC
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc------ceeeecc-CCCCC
Confidence 8 999998754332 2223456689999999999766554 6889999999876420 1133443 34667
Q ss_pred EEEEecC-CCEEEEe-CCCCcEEEEeCCCCcE--EEEEecc----CCC---eeEEEEEecCceeeec-cCCCceeeccCC
Q 014475 273 TCLAYST-GDLLISG-SEDGMVRVWDPITHNI--VRMFRLA----KGP---VNNILVVRRPLYLNLG-SFSNPHTSSRRH 340 (424)
Q Consensus 273 ~~~~~~~-~~~l~t~-~~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~~~-~~d~~i~iw~~~ 340 (424)
..++|+| +++++++ ..++.|.+||+.+++. +..+..+ ..+ ...++|+|++++|+++ ..++.|.+|++.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 8899999 8866554 4578899999999887 4444432 222 3558999999988654 556799999998
Q ss_pred CCC
Q 014475 341 GSQ 343 (424)
Q Consensus 341 ~~~ 343 (424)
+..
T Consensus 304 ~~~ 306 (331)
T 3u4y_A 304 GKV 306 (331)
T ss_dssp SCE
T ss_pred CCc
Confidence 543
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.3e-25 Score=200.74 Aligned_cols=265 Identities=12% Similarity=0.075 Sum_probs=202.3
Q ss_pred ccccCCCCceeEEEEECCCCceeeeecCCC---CeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccc-----c
Q 014475 52 LREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAH-----Y 122 (424)
Q Consensus 52 ~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~-----~ 122 (424)
++++++.+ +.|.+||..+++......... .+..++|+|+++.+ +++..++.|.+||+.+++.+..+... .
T Consensus 3 ~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 45666666 999999999887765554444 68999999999766 45566789999999999887766531 2
Q ss_pred CCeEEEEEccCCcEEEEee------------CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 123 RAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
..+.+++|+|++++++++. .++.|.+||+.++ .....+.. ...+.+++|+|++ +
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~s~dg--~ 147 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----------SRRKAFEA-PRQITMLAWARDG--S 147 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------EEEEEEEC-CSSCCCEEECTTS--S
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-----------cEEEEEeC-CCCcceeEECCCC--C
Confidence 3677899999999988886 5799999999652 22233332 3457788999998 6
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC------------------------cEEEEE
Q 014475 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------------------------SIYIAA 246 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d 246 (424)
+++++ ++.|.+||+.+++....+........+.|+|++..+++.+..+ .|.+||
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 67766 6889999999998887776433222347899988776554333 468899
Q ss_pred cCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee
Q 014475 247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL 325 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 325 (424)
+.++. .....+..+...+.+++|+| +++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|
T Consensus 226 ~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 226 LETGE--------MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTTCC--------EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred CCCCC--------ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence 98764 11333445667788999999 8888888 799999999999988888743 567899999999999
Q ss_pred eeccCCCceeeccCCCCCC
Q 014475 326 NLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 326 ~~~~~d~~i~iw~~~~~~~ 344 (424)
++++.++.|.+|++.+.+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEESBSSEEEEEETTTCCE
T ss_pred EEEcCCCcEEEEECcCCcE
Confidence 9889999999999987754
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=4.1e-25 Score=226.22 Aligned_cols=312 Identities=13% Similarity=0.038 Sum_probs=233.9
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCC--------CCCceEEecceee-cCCCccccCCCCceeEEEEECCCCceee
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--------PPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEV 75 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~-~~~~~l~~~~~~~g~i~vwd~~~~~~~~ 75 (424)
||.+. ++.|.+||+..+ .+..+..+.. +...+..++ |+ |+|+.+++++ + +.|.+|+...++...
T Consensus 259 la~~~--~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~--~S~pdG~~la~~~-~-~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 259 ILFSK--GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAED--FSPLDGDLIAFVS-R-GQAFIQDVSGTYVLK 331 (1045)
T ss_dssp EEEEE--TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEE--EEECGGGCEEEEE-T-TEEEEECTTSSBEEE
T ss_pred EEEEe--CCEEEEecCCce-EeeeeccCcccccccccccccccceee--ecCCCCCEEEEEE-c-CEEEEEcCCCCceEE
Confidence 44444 788999999544 3445543211 223577788 99 9999999887 3 899999998877655
Q ss_pred eecCCC-CeeEEEECCCCCEEEEecCCCcEE-EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 76 KSLPAE-PIKPIAANSHGTYIAGGGQSGDIY-MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 76 ~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
...+.. .+..++|+ ||+.|++++.++.+. +||+.+++... +..|...+..++|+|++++|++++.++.|++||+.+
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 555666 89999999 999999988888888 99988776544 347888999999999999999999999999999965
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC----------cEEEEecCCCceeeeeecCcceeE
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----------TCKVWSLLKGRLLRNIVFPSVIDA 223 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~----------~v~iwd~~~~~~~~~~~~~~~i~~ 223 (424)
+ ........|...+.+++|+|++ ++|++++.++ .|++||+.+++......+...+..
T Consensus 410 g-----------~~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 410 G-----------KPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 476 (1045)
T ss_dssp C-----------CEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred C-----------ceEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCC
Confidence 2 2333445788899999999998 7888777644 899999998874433346777889
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC----------------C-----------------c-CceeeeeecccC
Q 014475 224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS----------------S-----------------Y-GMHIIGSLSDHS 269 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~-----------------~-~~~~~~~~~~~~ 269 (424)
++|+|+|+.|+.++.++....|+......... . . ....+..+..|.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~ 556 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 556 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred ceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCC
Confidence 99999999999999887777776543211000 0 0 001123344567
Q ss_pred cCeEEEEecC-CCEEEE-------------eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475 270 KAVTCLAYST-GDLLIS-------------GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~ 335 (424)
..+..++++| +.++++ ......|.+||+.+++..... ..+..++|+|||++|++++.+ .++
T Consensus 557 ~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~ 631 (1045)
T 1k32_A 557 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKI 631 (1045)
T ss_dssp BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCE
T ss_pred CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEE
Confidence 7899999999 766664 123557899999988754333 568899999999999998766 899
Q ss_pred eccCCCCC
Q 014475 336 SSRRHGSQ 343 (424)
Q Consensus 336 iw~~~~~~ 343 (424)
+|++.+.+
T Consensus 632 ~~d~~~~~ 639 (1045)
T 1k32_A 632 YTFPLEKP 639 (1045)
T ss_dssp EEEESSCT
T ss_pred EEeCccCc
Confidence 99998765
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=4.2e-25 Score=193.53 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=189.3
Q ss_pred ecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-Cceeeee-cC-CCCe
Q 014475 7 SSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKS-LP-AEPI 83 (424)
Q Consensus 7 t~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-~~~~~~~-~~-~~~v 83 (424)
+++ .|++|++||+.+++..... .+ ...+.+++ |+|+++++++++ + +.|.+||+.+ ++..... .+ ...+
T Consensus 17 ~~~-~~~~i~~~d~~~~~~~~~~-~~---~~~v~~~~--~spdg~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGS-MRSSIEIFNIRTRKMRVVW-QT---PELFEAPN--WSPDGKYLLLNS-E-GLLYRLSLAGDPSPEKVDTGFATICN 87 (297)
T ss_dssp -CC-CCEEEEEEETTTTEEEEEE-EE---SSCCEEEE--ECTTSSEEEEEE-T-TEEEEEESSSCCSCEECCCTTCCCBC
T ss_pred CCC-cceeEEEEeCCCCceeeec-cC---CcceEeeE--ECCCCCEEEEEc-C-CeEEEEeCCCCCCceEeccccccccc
Confidence 345 7899999999988876444 33 45678888 999999999876 4 8999999988 6654333 23 4688
Q ss_pred eEEEECCCCCEEEEec--CCCcEEEEEc--cCcceeeeeccccCCeEEEEEccCCcEEE-EeeCCCcEEEEeCCcccchh
Q 014475 84 KPIAANSHGTYIAGGG--QSGDIYMWEV--ASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 84 ~~~~~s~~~~~l~~~~--~dg~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~ 158 (424)
.+++|+|++++|++++ .++...||.+ .++. ...+..+ ..+..++|+|+++.|+ +++.++.+++|+++..
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~---- 161 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID---- 161 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT----
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC----
Confidence 9999999999999988 3345555544 4444 3444433 3489999999999877 7788999999986421
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecC-CCceeeeee-cCcceeEEEECCCCCEEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (424)
......+..+...+.+++|+|++ +.++.++ .++.+++|++. .+.....+. +...+..++|+|++++|++
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 162 ------SGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp ------TCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEE
T ss_pred ------CCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEE
Confidence 11234556678889999999998 6666555 58999999986 444444444 6678899999999999988
Q ss_pred EeCC-----------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 236 GSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 236 ~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
++.+ +.|++||+.++. ...+..+.+|...+..++|+| +++|++++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMDGGN-------VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETTSCS-------CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecCCCC-------ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 8765 569999998764 234455557888999999999 88888876553
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3.6e-25 Score=218.70 Aligned_cols=276 Identities=8% Similarity=-0.001 Sum_probs=195.3
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCC---CeeEEEECCCCCEEEEecCC---------CcEE
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE---PIKPIAANSHGTYIAGGGQS---------GDIY 105 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~---~v~~~~~s~~~~~l~~~~~d---------g~v~ 105 (424)
...++ |+|+|+++++ +.+ |+|++||..+++...... +.. .|.+++|||||++|++++.+ +.++
T Consensus 19 ~~~~~--~spdg~~~~~-~~d-g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAK--WISDTEFIYR-EQK-GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCC--BSSSSCBCCC-CSS-SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccE--EcCCCcEEEE-eCC-CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 44556 9999997766 555 999999999887654443 332 49999999999999998764 7789
Q ss_pred EEEccCcce--eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC-------
Q 014475 106 MWEVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL------- 176 (424)
Q Consensus 106 iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 176 (424)
+||+.+++. +.....|...+..++|+|||+.|+.++. +.|++||+.++.. ......+..
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-----------~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-----------IRVVSTGKEGVIYNGL 162 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-----------EEEECCCBTTTEEEEE
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-----------EEEecCCCCCceECcc
Confidence 999998876 2222345556889999999999999886 7999999976321 112222222
Q ss_pred -----------ceeEEEEEEcCceeEEEEEeCCC----------------------------------cEEEEecCCCce
Q 014475 177 -----------RITDIVIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRL 211 (424)
Q Consensus 177 -----------~i~~~~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~~~~~~ 211 (424)
.+.+++|+|++ +.|++++.++ .|++||+.+++.
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred cceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence 23789999999 7888877543 799999998876
Q ss_pred eeeeec-------CcceeEEEECCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCe----EEE
Q 014475 212 LRNIVF-------PSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV----TCL 275 (424)
Q Consensus 212 ~~~~~~-------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~~ 275 (424)
...+.. ...+..++|+|+|+++++... +..|++||+.++. ....+. .+...+ ..+
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCC
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCc
Confidence 455542 467899999999998877653 3579999998763 222222 233333 378
Q ss_pred EecC-CCEEEE--eCCCC------cEEEEe-CCCCc--EEEEEeccCCCeeE-EEEEecCceeeeccCC---CceeeccC
Q 014475 276 AYST-GDLLIS--GSEDG------MVRVWD-PITHN--IVRMFRLAKGPVNN-ILVVRRPLYLNLGSFS---NPHTSSRR 339 (424)
Q Consensus 276 ~~~~-~~~l~t--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-l~~s~~~~~l~~~~~d---~~i~iw~~ 339 (424)
+|+| ++.|+. +..++ .|.+|| ...++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 9999 876664 45666 577788 34444 14555544445554 6999999999765554 78999988
Q ss_pred CC
Q 014475 340 HG 341 (424)
Q Consensus 340 ~~ 341 (424)
..
T Consensus 392 ~~ 393 (723)
T 1xfd_A 392 NT 393 (723)
T ss_dssp CS
T ss_pred eC
Confidence 64
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=3.4e-23 Score=186.05 Aligned_cols=264 Identities=10% Similarity=0.104 Sum_probs=184.5
Q ss_pred eeEEEEECCC--Cceee--eecCCCCeeEEEECCCCCEEEEecC---CCcEEEEEccCcc--eeeeeccccCCeEEEEEc
Q 014475 61 GSILYWSWSK--PQVEV--KSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGR--LLKKWHAHYRAVTCLVFS 131 (424)
Q Consensus 61 g~i~vwd~~~--~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~ 131 (424)
+.|.+|+++. ++... ...+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 6777877654 44332 233456788999999999 555443 6899999997765 344445577888999999
Q ss_pred cCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecC---------CcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 132 EDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG---------HTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 132 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
|++++|++++ .++.+.+|++.... ....+..+.. +...+.+++|+|++ +.+++...++.|
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~g--------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v 164 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAADG--------ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKV 164 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTS--------CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCCC--------CeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEE
Confidence 9999888887 67899999985311 1111222211 22357889999998 666666678899
Q ss_pred EEEecC-CCceeee--ee--cCcceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------
Q 014475 202 KVWSLL-KGRLLRN--IV--FPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------ 269 (424)
Q Consensus 202 ~iwd~~-~~~~~~~--~~--~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------ 269 (424)
.+||+. +++.... +. ....+..++|+|+|+++++ ...++.+.+|+++..... ...........
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSC
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCC
Confidence 999998 4543322 22 2346788999999997666 456789999998852210 12222222222
Q ss_pred cCeEEEEecC-CCEE-EEeCCCCcEEEEeCCC---CcEEEEEeccCCCeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475 270 KAVTCLAYST-GDLL-ISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH 340 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l-~t~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~ 340 (424)
..+..++|+| +++| ++...++.|.+|++.. .+.+..+..+...+..++|+|||++|++++. ++.+.+|++.
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4588899999 8866 5556789999999973 3556666666677899999999998887765 4889999553
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=5.4e-23 Score=184.76 Aligned_cols=282 Identities=12% Similarity=0.136 Sum_probs=186.1
Q ss_pred CeEEEeecCC---CCCceEEEeCC--CCceEE-EeeCCCCCCCceEEecceeecCCCccccCCC--CceeEEEEECCCCc
Q 014475 1 MELLIASSSV---ADTGIGCWDLE--SGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQ 72 (424)
Q Consensus 1 ~e~~lat~~~---~dg~i~vwd~~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--~~g~i~vwd~~~~~ 72 (424)
|.-.++.|++ .++.|.+|++. +++... ....+. .....++ |+|+|+ +++++. +++.|.+|++.+++
T Consensus 1 ~~~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~ 74 (347)
T 3hfq_A 1 MQERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQT 74 (347)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTE
T ss_pred CCcEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCc
Confidence 3444455521 35567777664 555433 122222 3344556 999999 555543 24899999997765
Q ss_pred eeee---ecCCCCeeEEEECCCCCEEEEec-CCCcEEEEEccC-cc--eeeeecc---------ccCCeEEEEEccCCcE
Q 014475 73 VEVK---SLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GR--LLKKWHA---------HYRAVTCLVFSEDGSF 136 (424)
Q Consensus 73 ~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~ 136 (424)
.... ..+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+|++++
T Consensus 75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 4322 23567889999999999888877 678999999963 22 2222221 1234889999999996
Q ss_pred EEEeeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC--Ccee
Q 014475 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK--GRLL 212 (424)
Q Consensus 137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~--~~~~ 212 (424)
+++...++.|.+|++... ........+.. .......++|+|++ +++ ++...++.+.+|++.. ++..
T Consensus 155 ~v~~~~~~~v~~~~~~~~--------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDA--------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEEETTTTEEEEEEECTT--------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEeCCCCEEEEEEECCC--------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceE
Confidence 666667889999999621 11111122222 22356789999998 644 4556788999999874 4432
Q ss_pred --eeee-cC------cceeEEEECCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475 213 --RNIV-FP------SVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (424)
Q Consensus 213 --~~~~-~~------~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 281 (424)
..+. .+ ..+..++|+|+|++|++ ...++.|.+|++.... ....+..+..+...+..++|+| ++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCC
Confidence 2222 12 45888999999998754 5568999999997421 0244556666667789999999 88
Q ss_pred EEEEeCC-CCcEEEE--eCCCCcEEE
Q 014475 282 LLISGSE-DGMVRVW--DPITHNIVR 304 (424)
Q Consensus 282 ~l~t~~~-dg~i~iw--d~~~~~~~~ 304 (424)
+|++++. ++.|.+| |..+++...
T Consensus 299 ~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 7777765 5899999 666676553
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=2.2e-23 Score=187.25 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=189.8
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCC--CeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccc-
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAH- 121 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~- 121 (424)
+.++++++++++.+ +.|.+||..+++......... .+..++|+|++++++ ++..++.|.+||+.+++.+..+..+
T Consensus 7 ~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 7 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred ccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 77888888888877 999999999887654444334 688999999998654 5567899999999999887766532
Q ss_pred -----cCCeEEEEEccCCcEEEEeeCC------------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 122 -----YRAVTCLVFSEDGSFLISGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 122 -----~~~i~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
...+..++|+|+++++++++.+ +.|.+||+.++.. ...+.... +...+.+++|+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s 156 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAA 156 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEEC
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeEC
Confidence 2347889999999999998865 8999999976321 11112222 33468889999
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCceeeeeecCc-------------------------ceeEEEECCCCCEEEEEeCC
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------------------VIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~d 239 (424)
|++ + +++++ +.|.+||+.+++....+.... ....+++++++.........
T Consensus 157 ~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 157 DDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp TTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 998 6 55544 349999999998877665332 33456666544211000000
Q ss_pred -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
..+..++..++. ........+...+..++++| +++++++ ++.|.+||+.+++.+..+.. ...+.++
T Consensus 232 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 232 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred ceeEEEEeccCCc--------EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 111224444432 11112223556788899998 6677777 88999999999998888874 3457899
Q ss_pred EEEecCceeeeccCCCceeeccCCCCCC
Q 014475 317 LVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 317 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+|+|++++|++++.++.|.+||..+.+.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EECCCCCEEEEecCCCeEEEEeccccce
Confidence 9999999998888899999999987653
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=5.2e-23 Score=202.64 Aligned_cols=276 Identities=14% Similarity=0.111 Sum_probs=189.4
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC-----Cceeeeec-CCCC---
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSL-PAEP--- 82 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~-----~~~~~~~~-~~~~--- 82 (424)
++.|++||+.+++..... .+. ..+..++ |+|+|+.++++ .+ +.|.+|++.+ ++...... +...
T Consensus 100 ~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~--~SpdG~~la~~-~~-~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLF-DTN---EETASLD--FSPVGDRVAYV-RN-HNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp TTEEEEEETTTTEEEEEE-CCT---TCCTTCE--ECTTSSEEEEE-ET-TEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred CCEEEEEECCCCceEEcc-CCc---ccccCCc--CCCCCCEEEEE-EC-CeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 589999999988765433 333 2344455 99999999985 44 8999999987 65543222 2222
Q ss_pred -----------eeEEEECCCCCEEEEec---------------------------------CCCcEEEEEccCcceeeee
Q 014475 83 -----------IKPIAANSHGTYIAGGG---------------------------------QSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 83 -----------v~~~~~s~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~~~~~~ 118 (424)
+.+++|||||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 58999999999999987 3467999999988765443
Q ss_pred --ccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEE--cC
Q 014475 119 --HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGY--GG 187 (424)
Q Consensus 119 --~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~--~~ 187 (424)
..|...+.+++|+||++.|++++.++ .|++||+.++.. ...+... ......+.++.|+| ++
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~sp~~dg 323 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF--------VRTLFVETDKHYVEPLHPLTFLPGSNN 323 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE--------EEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce--------eeEEEEccCCCeECccCCceeecCCCC
Confidence 24667799999999999999988775 899999976311 1111110 11112346789999 87
Q ss_pred ceeEEEEEeCCCcEEEEecC-CCceeeeee-cCcceeE-EEECCCCCEEEEEeCC-C----cEEEEEcCCCCCCCCCcCc
Q 014475 188 VSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRD-G----SIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~ 259 (424)
+++++++.++.+++|++. +++.+..+. +...+.. ++|+|+++.|+.++.+ + .|+.||..++.
T Consensus 324 --~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------- 393 (706)
T 2z3z_A 324 --QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------- 393 (706)
T ss_dssp --EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--------
T ss_pred --EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--------
Confidence 789999999999999886 566566555 4555666 7999999988766544 3 56666665542
Q ss_pred eeeeeecccCcCeEEEEecC-CCEEEEeCCC----CcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475 260 HIIGSLSDHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (424)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (424)
...+ .|...+.+++|+| +++++....+ +.|++||+.+++ ...+. +..++....+
T Consensus 394 --~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~ 452 (706)
T 2z3z_A 394 --TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM 452 (706)
T ss_dssp --CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred --ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence 1222 2567789999999 8877766433 569999998887 43333 3344444434
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.7e-22 Score=180.54 Aligned_cols=249 Identities=12% Similarity=0.093 Sum_probs=190.5
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-CC---------
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE--------- 81 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~--------- 81 (424)
++.|.+||..+++.+..+.... ....++ ++|+++.++++...++.|.+||..+++....... ..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL----KPFGAT--INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS----CCCSEE--EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCC----CcceEE--ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 6789999999999988886532 234445 9999997776655559999999998876543322 11
Q ss_pred CeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 82 PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.++.|+|+++++++++.++.|.+||+.++.
T Consensus 142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---- 217 (353)
T 3vgz_A 142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---- 217 (353)
T ss_dssp EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----
T ss_pred CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----
Confidence 278899999999887765 47889999999999888887666678899999999999999999999999996632
Q ss_pred ccccccceEEeec----CCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475 160 SQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 160 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
....+. ++...+..++|+|++ +.+++++ .++.|.+||+.+++.+..+....+ ..++|+|++++++
T Consensus 218 -------~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 218 -------ILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAY 287 (353)
T ss_dssp -------EEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEE
T ss_pred -------EEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEE
Confidence 222222 255667889999998 5555544 559999999999998888875543 6799999999776
Q ss_pred EEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 235 AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 235 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
++. .++.|.+||..+. +.+..+.. ...+.+++|+| +++++++..++
T Consensus 288 v~~~~~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSY---------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTT---------EEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEECCCC---------eEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 665 6899999999876 44444443 34678999999 88666665553
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=207.35 Aligned_cols=319 Identities=12% Similarity=0.031 Sum_probs=211.6
Q ss_pred eecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC--------ceeEEEEECCCCceeeee
Q 014475 6 ASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 6 at~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~--------~g~i~vwd~~~~~~~~~~ 77 (424)
+..+ .|++|++||+.+++....+..+......+..++ |+|||++|++++.. ++.|++||+.+++.....
T Consensus 30 ~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~ 106 (719)
T 1z68_A 30 LHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYG--LSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN 106 (719)
T ss_dssp EEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred EEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEE--ECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence 3344 589999999999988766654321112367777 99999999988751 389999999988762111
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCe-----------------EEEEEccCCcEEEE
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGSFLIS 139 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~~~~~l~s 139 (424)
.....+..++|||||+.||.+. ++.|++|++.+++..... .++...| .++.|+|||++|++
T Consensus 107 ~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 107 ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 2236789999999999999985 789999999888765433 2332222 48999999999999
Q ss_pred eeCCC----------------------------------cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE
Q 014475 140 GSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (424)
Q Consensus 140 ~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 185 (424)
++.|. .|++||+.++...... .......+.+|...+..++|+|
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sp 262 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ---EVPVPAMIASSDYYFSWLTWVT 262 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE---ECCCCHHHHTSCEEEEEEEESS
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee---EccCCccCCCCcceEEEeEEeC
Confidence 87652 7889998764321000 0000012346888899999999
Q ss_pred cCceeEEEEEeCC----CcEEEEe----cCCCceeeee-----ecCccee-----EEEECCCCCEEEE--EeCCCc--EE
Q 014475 186 GGVSATIVSASED----RTCKVWS----LLKGRLLRNI-----VFPSVID-----AIALDPAEHVFYA--GSRDGS--IY 243 (424)
Q Consensus 186 ~~~~~~l~~~~~d----~~v~iwd----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~l~~--~~~dg~--i~ 243 (424)
++ ..+++.... ..|.+|| +.+++....+ .+...+. .+.|+|+|+.++. ...+|. |+
T Consensus 263 D~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 263 DE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred CC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 96 777764433 2488899 8777765554 2445555 7899999996554 445564 55
Q ss_pred EEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE-EEeCC----CCcEEEEeCCC--Cc-EEEEEec----cCC
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL-ISGSE----DGMVRVWDPIT--HN-IVRMFRL----AKG 311 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~t~~~----dg~i~iwd~~~--~~-~~~~~~~----~~~ 311 (424)
+||+..+. ...+..+...+..+.+.+++.| +++.. ++..++|.+.. +. ....+.. |..
T Consensus 341 ~~~~~~~~----------~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~ 410 (719)
T 1z68_A 341 YIKDTVEN----------AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC 410 (719)
T ss_dssp EESSCSTT----------CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred EEECCCCc----------eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence 66665532 2234445555666554474444 44444 48889998754 32 1233332 556
Q ss_pred CeeEEEEEecCceeee-ccCC--CceeeccCCCCC
Q 014475 312 PVNNILVVRRPLYLNL-GSFS--NPHTSSRRHGSQ 343 (424)
Q Consensus 312 ~v~~l~~s~~~~~l~~-~~~d--~~i~iw~~~~~~ 343 (424)
.+..+.|+|++++++. ++.+ ..+.+|++.+++
T Consensus 411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 7889999999988764 3333 357888886654
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=2.7e-23 Score=200.01 Aligned_cols=268 Identities=12% Similarity=0.045 Sum_probs=196.5
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCC-CCeeEEEECCCCCEEEEecC---CCcEEEEEccC-
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS- 111 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~v~iwd~~~- 111 (424)
..+.+++ |+|||+.||+++..+|++.||++++++......+. ..+..++|+|| +++++++. +....+|.+..
T Consensus 22 ~~~~~~~--~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 22 VEKYSLQ--GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp SCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred cchheee--cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3578888 99999999998874499999999777665555555 58999999999 77776654 45566665543
Q ss_pred --cceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCc
Q 014475 112 --GRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (424)
Q Consensus 112 --~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (424)
+... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.++. . ..+..+.. .+++|+|++
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----------~-~~l~~~~~--~~~~~spDG- 161 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----------L-RELARLPG--FGFVSDIRG- 161 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----------E-EEEEEESS--CEEEEEEET-
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----------E-EEeecCCC--ceEEECCCC-
Confidence 2222 33322 23446688887753 3333444556699986531 1 11222222 788999999
Q ss_pred eeEEEEEeCC----CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceee
Q 014475 189 SATIVSASED----RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHII 262 (424)
Q Consensus 189 ~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~ 262 (424)
+.+++++.+ +.|++||+.+++......+...+..++|+|||+.|+++..++ .|++||+.++. ..
T Consensus 162 -~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---------~~ 231 (582)
T 3o4h_A 162 -DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---------VE 231 (582)
T ss_dssp -TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---------EE
T ss_pred -CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---------EE
Confidence 888877776 789999999888765545778899999999999999888888 89999998763 22
Q ss_pred eeecccCcCeEEEE--------ecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCc
Q 014475 263 GSLSDHSKAVTCLA--------YST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 263 ~~~~~~~~~i~~~~--------~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
.+..|...+..+. |+| +.++++++.|+.+++|++ ++... .+.+.+.+++|+ +++++++++.+..
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 5556666666666 999 888899999999999999 66554 345778999999 9999988887754
Q ss_pred ---eeeccCCC
Q 014475 334 ---HTSSRRHG 341 (424)
Q Consensus 334 ---i~iw~~~~ 341 (424)
+.+|+..+
T Consensus 305 p~~l~~~d~~~ 315 (582)
T 3o4h_A 305 PPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEETTCC
T ss_pred CCeEEEEcCCC
Confidence 67777654
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=1.1e-22 Score=187.53 Aligned_cols=262 Identities=13% Similarity=0.101 Sum_probs=177.7
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce----------eee-----eccccCCe
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----------LKK-----WHAHYRAV 125 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----------~~~-----~~~~~~~i 125 (424)
+.+++|+.... .+...++.+++++++.++++++.++ +++|+...... +.. ...+...|
T Consensus 23 ~~vri~~~~~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (434)
T 2oit_A 23 KKVRIFDSPEE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI 95 (434)
T ss_dssp CEEECSCCCSS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred eeEEecCCccc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence 46777764311 2345689999999999999999887 99987642111 110 11245679
Q ss_pred EEEEEccCCcEEE----EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcE
Q 014475 126 TCLVFSEDGSFLI----SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (424)
Q Consensus 126 ~~~~~~~~~~~l~----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v 201 (424)
.+++|+|++++|+ +++.|+.|++||+++.................+.+|...|.+++|+|+.. .+|++++.||+|
T Consensus 96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v 174 (434)
T 2oit_A 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSI 174 (434)
T ss_dssp EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCE
T ss_pred cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeE
Confidence 9999999999999 78899999999996531100000011112456678999999999999832 799999999999
Q ss_pred EEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-------ccCcCeE
Q 014475 202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------DHSKAVT 273 (424)
Q Consensus 202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~i~ 273 (424)
++||++++....... |...+.+++|+|+|++|++|+.||.|++||.+.. ....+. .|...|.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQ----------EKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCC----------EEEEECCCTTCCTTSCEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCc----------ccccccCCcccCCCCceeEE
Confidence 999999886654443 6789999999999999999999999999999832 111221 2345899
Q ss_pred EEEecC-CCEEEEe-CCCC------cEEEEeCCCCc-----EEEEEe-------ccCCCeeEEEEEecCceeee-ccCCC
Q 014475 274 CLAYST-GDLLISG-SEDG------MVRVWDPITHN-----IVRMFR-------LAKGPVNNILVVRRPLYLNL-GSFSN 332 (424)
Q Consensus 274 ~~~~~~-~~~l~t~-~~dg------~i~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~~-~~~d~ 332 (424)
+++|++ +.++++. ..|| .+++|+++..+ ....+. ....+-..+..-++.+++++ .+..+
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 999999 5555432 2333 38999998652 112211 11122223334477666654 44555
Q ss_pred ceeeccCC
Q 014475 333 PHTSSRRH 340 (424)
Q Consensus 333 ~i~iw~~~ 340 (424)
.|-+....
T Consensus 325 dv~vl~~~ 332 (434)
T 2oit_A 325 EVSILARQ 332 (434)
T ss_dssp BCEEEEEC
T ss_pred ceeEEEec
Confidence 56666644
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=1.9e-21 Score=174.55 Aligned_cols=267 Identities=12% Similarity=0.075 Sum_probs=184.8
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC---
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--- 79 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~--- 79 (424)
.++++++ .+++|.+||+.+++.+..+..... ..+..++ |+|+++.+++++..++.|.+||..+++.......
T Consensus 12 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 12 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred EEEEEeC-CCCeEEEEECCCCcEEEEEecCCC--CCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 4677888 899999999999999888865431 1345566 9999987766554449999999998776544332
Q ss_pred ----CCCeeEEEECCCCCEEEEecCC------------CcEEEEEccCcceee---eeccccCCeEEEEEccCCcEEEEe
Q 014475 80 ----AEPIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLLK---KWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 80 ----~~~v~~~~~s~~~~~l~~~~~d------------g~v~iwd~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
...+..++|+|+|+++++++.+ +.|.+||+.+++... .+. +...+.+++|+|+++ ++++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~ 164 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVA 164 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEc
Confidence 2237899999999999998865 899999998865433 333 334688999999999 5555
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeecCCc---------------------C---ceeEEEEEEcCce-------
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------------------L---RITDIVIGYGGVS------- 189 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~i~~~~~~~~~~~------- 189 (424)
+. .|.+||+.++... ..+..+. . ....+++.+++..
T Consensus 165 ~~--~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 165 GP--DIYKMDVKTGKYT-----------VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp SS--SEEEECTTTCCEE-----------EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred cC--cEEEEeCCCCcee-----------ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 43 4999999764321 1111110 0 2233444433210
Q ss_pred --eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECC-CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 190 --ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 190 --~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
.++.....++.+++|++. .....+..++++| ++++++++ ++.|.+||+.+. +.+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~ 292 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA--------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN 292 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE--------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE
T ss_pred ceeEEEEeccCCcEEecccc--------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------eEEEEEc
Confidence 111122334445554442 1455788999999 99999988 889999999886 3344443
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEecc
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~ 309 (424)
....+.+++|+| +++|++++.++.|++||+.+++.+..+..+
T Consensus 293 -~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 293 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 234577899999 888888888999999999999999888755
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=5.9e-21 Score=172.43 Aligned_cols=291 Identities=11% Similarity=0.146 Sum_probs=189.9
Q ss_pred CCCceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC---ceeEEEEECCC--Cceeee---ecCC
Q 014475 11 ADTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSK--PQVEVK---SLPA 80 (424)
Q Consensus 11 ~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~---~g~i~vwd~~~--~~~~~~---~~~~ 80 (424)
.++.|.+|++ ++|+....... +......++ |+|+|++|++++.+ ++.|.+|+++. ++.... ..+.
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEE--ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 4678999976 55654433222 234445556 99999998888763 37999999875 333222 2245
Q ss_pred CCeeEEEECCCCCEEEEec-CCCcEEEEEccCcceeeeec--------------cccCCeEEEEEccCCcEEEEee-CCC
Q 014475 81 EPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWH--------------AHYRAVTCLVFSEDGSFLISGS-EDG 144 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~s~~-~dg 144 (424)
.....+++ ++++|++++ .++.|.+|++.....+..+. .+...+.+++|+|+++++++++ .++
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 56777888 777777665 57899999997543332211 1223468899999999766555 478
Q ss_pred cEEEEeCCcccchhcccccc-cce----EEeecCCcCceeEEEEEEcCceeEEEEEe-CCCcEEEEecCCCcee--eeee
Q 014475 145 CVRIWSLLTVFEECESQRAS-HLY----LHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLL--RNIV 216 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~--~~~~ 216 (424)
.|.+|++......... . ... ......+......++|+|++ +++++++ .++.|.+||+.+++.. ..+.
T Consensus 178 ~v~v~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 178 QIHKFNINPNANADNK---EKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp EEEEEEECTTCCTTTC---CCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCCcccc---cceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 9999998642110000 0 000 11122344567889999998 6676666 6899999999877542 2222
Q ss_pred ----cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC-C
Q 014475 217 ----FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-E 288 (424)
Q Consensus 217 ----~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~-~ 288 (424)
+......++|+|++++|+++..+ +.|.+|+++..... ...+..+.. ...+..++|+| +++|++++ .
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence 12346799999999999777665 89999999732110 133444443 45788999999 88777776 6
Q ss_pred CCcEEEE--eCCCCcEEEEE-eccCCCeeEEEEE
Q 014475 289 DGMVRVW--DPITHNIVRMF-RLAKGPVNNILVV 319 (424)
Q Consensus 289 dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~s 319 (424)
++.|.+| |..+++..... ..+...+.++.|.
T Consensus 327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7899995 55577765543 2344578888886
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=9.4e-23 Score=196.19 Aligned_cols=236 Identities=9% Similarity=0.024 Sum_probs=179.2
Q ss_pred CCCCeeEEEECCCCCEEEEecC-CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcc
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTV 154 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~ 154 (424)
...+|.+++|+|||+.||.++. ||++.||++.+++..+....+...+..+.|+|| +.+++++. +....+|.+...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3568999999999999999877 999999999766654443333368999999999 77777765 455666655320
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEE
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (424)
.. ... . .+.... .....+|+|+++...+++++. +.+.+||+.+++......++. .+++|+|+|++++
T Consensus 99 ~~------g~~--~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 99 RP------GEE--Q-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp ST------TCC--E-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEE
T ss_pred CC------Ccc--c-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEE
Confidence 00 011 1 122222 234668999986445555544 455599999887666555444 8899999999999
Q ss_pred EEeCC----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC--cEEEEeCCCCcEEEEEe
Q 014475 235 AGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG--MVRVWDPITHNIVRMFR 307 (424)
Q Consensus 235 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg--~i~iwd~~~~~~~~~~~ 307 (424)
.++.+ +.|++||+.++. ...+..|...+..++|+| |+.|+++..++ .|++||+.+++.. .+.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred EEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 88776 789999998764 335667888899999999 99999888888 8999999999887 777
Q ss_pred ccCCCeeEEE--------EEecCceeeeccCCCceeeccC
Q 014475 308 LAKGPVNNIL--------VVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 308 ~~~~~v~~l~--------~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
.|...+..++ |+|||..+++++.|+.+++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7877777777 9999988899999999999998
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.90 E-value=6.3e-22 Score=180.62 Aligned_cols=301 Identities=9% Similarity=-0.074 Sum_probs=203.9
Q ss_pred EEEeCCCCceEEEeeCCCCCCCc--eEEecceeecCCCccccCCCCce--eEEEEECCCCceeeeec-CCCCeeEEEECC
Q 014475 16 GCWDLESGAEQLRYKSCASPPHG--LACVGQRFLASSQLREQPSASSG--SILYWSWSKPQVEVKSL-PAEPIKPIAANS 90 (424)
Q Consensus 16 ~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~~~g--~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~ 90 (424)
..+|..+|..+..+..+...... +...+ |+|||+.|+.++..+| .|.+||..+++...... +...+..+.|+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKC--FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCcc--CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence 45677888888887655432211 11145 9999999998887436 48888988877654433 444555788999
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEE--EccCCcEEEEe----------------------eCCCcE
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FSEDGSFLISG----------------------SEDGCV 146 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~s~----------------------~~dg~i 146 (424)
||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++.. ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 999999999889999999999987766665655554444 48899888742 244679
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCC------CcEEEEecCCCceeeeeecC-
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP- 218 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~- 218 (424)
.+||+.++. ...+..+...+..+.|+| ++ +.|+....+ ..|.++|...++......+.
T Consensus 171 ~~~d~~~g~------------~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 171 MRVDLKTGE------------STVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp EEEETTTCC------------EEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred EEEECCCCc------------eEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 999986631 223334566788999999 87 777766653 37888887766544333333
Q ss_pred -cceeEEEECCCCCEEEEEeC-CC----cEEEEEcCCCCCCCCCcCceeeeeecccCcC---eEEEEecC-CCEEEEe--
Q 014475 219 -SVIDAIALDPAEHVFYAGSR-DG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKA---VTCLAYST-GDLLISG-- 286 (424)
Q Consensus 219 -~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~-~~~l~t~-- 286 (424)
..+....|+|+|+.|+..+. ++ .|++||+.++.. ..+..+.++... .....|+| ++.|+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 35778899999997765443 22 399999988641 223333321110 11236888 7766643
Q ss_pred -------CCCCcEEEEeCCCCcEEEEEeccCC-----------CeeEEEEEecCceeeecc-CCCceeeccCC
Q 014475 287 -------SEDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (424)
Q Consensus 287 -------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~~-~d~~i~iw~~~ 340 (424)
..+..|++||+.+++. ..+..+.. .+..++|+|||+.|+.++ .+|...+|.+.
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4567899999998765 45555655 578899999999887655 57777788765
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.8e-20 Score=169.17 Aligned_cols=266 Identities=9% Similarity=0.077 Sum_probs=180.2
Q ss_pred eeEEEEECC--CCceeee-ecCCCCeeEEEECCCCCEEEEecCC----CcEEEEEccC--cce--eeeeccccCCeEEEE
Q 014475 61 GSILYWSWS--KPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVAS--GRL--LKKWHAHYRAVTCLV 129 (424)
Q Consensus 61 g~i~vwd~~--~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~--~~~--~~~~~~~~~~i~~~~ 129 (424)
+.|.+|.++ +++.... ..+...+..++|+|++++|++++.+ +.|.+|++.. ++. +.....+......++
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~ 106 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT 106 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence 789999774 4443322 2267788899999999999998875 7999999875 432 333344556677888
Q ss_pred EccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEee--------cCCcCceeEEEEEEcCceeEEEEE-eCCC
Q 014475 130 FSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSF--------TGHTLRITDIVIGYGGVSATIVSA-SEDR 199 (424)
Q Consensus 130 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~~~-~~d~ 199 (424)
+ +++++++++ .++.|.+|++........ ....... ..+...+.+++|+|++ ++++++ ..++
T Consensus 107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~ 177 (361)
T 3scy_A 107 T--NGKNIVTANYSGGSITVFPIGQDGALLP-----ASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTD 177 (361)
T ss_dssp E--CSSEEEEEETTTTEEEEEEBCTTSCBCS-----CSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTT
T ss_pred E--CCCEEEEEECCCCEEEEEEeCCCCcCcc-----cceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCC
Confidence 8 777777666 578999999964221100 0000011 1123345789999998 655544 4588
Q ss_pred cEEEEecCCCc-------e-------eeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 200 TCKVWSLLKGR-------L-------LRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 200 ~v~iwd~~~~~-------~-------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
.|.+|++.... . .........+..++|+|+++++++++ .++.|.+|++.++.... ...+..
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~----~~~~~~ 253 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE----IQTVAA 253 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE----EEEEES
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE----eEEEec
Confidence 99999987543 1 11222456678999999999888777 68999999998642100 011222
Q ss_pred ecccCcCeEEEEecC-CCEEEEeCC--CCcEEEEeCC--CCc--EEEEEeccCCCeeEEEEEecCceeeecc-CCCceee
Q 014475 265 LSDHSKAVTCLAYST-GDLLISGSE--DGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTS 336 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~-~~~l~t~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d~~i~i 336 (424)
...+...+..++|+| +++|+++.. ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+
T Consensus 254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 233445678999999 888866554 5899999985 454 4455554 55788999999999888876 6788999
Q ss_pred ccCC
Q 014475 337 SRRH 340 (424)
Q Consensus 337 w~~~ 340 (424)
|++.
T Consensus 333 ~~~d 336 (361)
T 3scy_A 333 FERD 336 (361)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7554
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.5e-21 Score=179.92 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=152.6
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCC-----------ce-----eeeecCCCCeeEEEECCCCCEEE----E
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKP-----------QV-----EVKSLPAEPIKPIAANSHGTYIA----G 97 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~-----------~~-----~~~~~~~~~v~~~~~s~~~~~l~----~ 97 (424)
.+..++ +++++.++++++.+ + +++|+.... .. .....+...|.+++|+|++++|+ +
T Consensus 38 ~~n~la--vs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 38 RSSLLA--VSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCBCEE--EETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CccEEE--EecCCCEEEEECCC-E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 466777 99999999998886 6 888875311 00 01223456899999999999999 7
Q ss_pred ecCCCcEEEEEccCc--------ce---eeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475 98 GGQSGDIYMWEVASG--------RL---LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 98 ~~~dg~v~iwd~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
|+.|+.|+|||++++ +. +..+.+|...|.+++|+|+ +++|++++.||+|++||++++
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----------- 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----------- 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-----------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-----------
Confidence 889999999999765 21 3456679999999999997 889999999999999999652
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-c-------CcceeEEEECCCCCEEEEE-
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F-------PSVIDAIALDPAEHVFYAG- 236 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~l~~~- 236 (424)
.......+|...|.+++|+|++ ++|++|+.||.|++||++ ++....+. + ...+.+++|++++.++++.
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 2334456688999999999998 899999999999999998 55554443 1 2378999999988877653
Q ss_pred eCCC------cEEEEEcCCCC
Q 014475 237 SRDG------SIYIAALNAES 251 (424)
Q Consensus 237 ~~dg------~i~i~d~~~~~ 251 (424)
..+| .+++|+++...
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCTT
T ss_pred cCCCccCCCCceEEEEeccCC
Confidence 3443 38999998753
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=198.42 Aligned_cols=275 Identities=11% Similarity=0.027 Sum_probs=190.2
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCC----CeeEEEECCCCCEEEEecC---------CCcEEEEEccCc
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE----PIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASG 112 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~---------dg~v~iwd~~~~ 112 (424)
|+|+|++++++ .+ +.|++||..+++......+.. .+.+++|||||++|++++. ++.|++||+.++
T Consensus 23 ~s~dg~~~~~~-~d-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 23 WISGQEYLHQS-AD-NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp ESSSSEEEEEC-TT-SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred ECCCCeEEEEc-CC-CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 99999766655 44 999999999887655443322 4899999999999998876 689999999988
Q ss_pred cee--eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCc---------eeEE
Q 014475 113 RLL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR---------ITDI 181 (424)
Q Consensus 113 ~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~ 181 (424)
+.+ ..+ ...+..++|+|||+.|+.+. ++.|++||+.++............ ..+.++... ..++
T Consensus 101 ~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~--~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 101 EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN--KIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT--TEEESSCCHHHHHHTTCSSCCE
T ss_pred ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC--CeEcccccceeeeecccCcccE
Confidence 763 222 24688899999999999886 779999999764321100000000 011223222 2589
Q ss_pred EEEEcCceeEEEEEeCCC----------------------------------cEEEEecCCCcee--eee-------ecC
Q 014475 182 VIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRLL--RNI-------VFP 218 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~~~~~~~--~~~-------~~~ 218 (424)
+|+|++ +.|++++.|. .|++||+.+++.. ..+ .+.
T Consensus 175 ~wSPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 175 WWSPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp EECTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred EECCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 999999 7888877552 7889999887753 111 155
Q ss_pred cceeEEEECCCCCEEEEEeCCC----cEEEEE----cCCCCCCCCCcCceeeeee----cccCcCeE-----EEEecC-C
Q 014475 219 SVIDAIALDPAEHVFYAGSRDG----SIYIAA----LNAESPSTSSYGMHIIGSL----SDHSKAVT-----CLAYST-G 280 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~~~~~~~~~~----~~~~~~i~-----~~~~~~-~ 280 (424)
..+..++|+|+++++++....+ .|.+|| ..++. ..... ..|...+. .+.|+| +
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---------CPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---------CCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---------eEEEEecccccCCceEccccCCccEECCCC
Confidence 6789999999987777644332 488888 65542 22222 35666666 789999 7
Q ss_pred CEEE--EeCCCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC-----CceeeccCCC
Q 014475 281 DLLI--SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-----NPHTSSRRHG 341 (424)
Q Consensus 281 ~~l~--t~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----~~i~iw~~~~ 341 (424)
+.++ +...+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 7544 344555 57778887776 45566566678888888 88777666554 8899998764
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=2.9e-20 Score=167.29 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=202.1
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec---
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL--- 78 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~--- 78 (424)
.|+.|.+||..+++.+.++..... . .++ |+|++++++++.. .++.|.+||..+.+......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~---p--~i~--~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFN---G--HVQ--VSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEE---E--EEE--ECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEEEEecCCCC---C--ceE--ECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 478999999999999888875432 2 556 9999999998752 24789999998776543322
Q ss_pred ----CCCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeee-eccccCCeEEEEEccCC-cEEEEeeCCCcEEEEe
Q 014475 79 ----PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWS 150 (424)
Q Consensus 79 ----~~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd 150 (424)
+......++|+|||++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.+|+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 2345788999999999998864 57899999999988877 5432 22335677765 6788889999999998
Q ss_pred CCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeeec-----------
Q 014475 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVF----------- 217 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~----------- 217 (424)
+.......... .....+.....++ .+.+.+++ ..++..+.++.+.++|+...... ..+..
T Consensus 180 ~~~~g~~~~~~----~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 180 LGEDGKVASQS----RSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp ECTTSSEEEEE----ECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred ECCCCcEeeec----cccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence 85411100000 0001122222222 23345666 55666678899999998755322 22111
Q ss_pred CcceeEEEECCCCCEEEEEeC-----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEE
Q 014475 218 PSVIDAIALDPAEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t 285 (424)
+.....++++|+++.++++.. .+.|.+||+.+. +.+..+..+. +.+++|+| +++|++
T Consensus 253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCCCEEEE
Confidence 122223789999888887653 347999999886 6677777766 89999999 889998
Q ss_pred eCCCCcEEEEeCCCC--cEEEEEeccCCCeeEEEEEecCc
Q 014475 286 GSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPL 323 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~ 323 (424)
++. +.|.+||..++ +.+.++..+...-..++++|+|.
T Consensus 322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 887 99999999999 99999866677778999999985
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=3.3e-20 Score=167.64 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=182.4
Q ss_pred eEEEeecCCC-CCceEEEeC--CCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC-CCceeeee
Q 014475 2 ELLIASSSVA-DTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVKS 77 (424)
Q Consensus 2 e~~lat~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~-~~~~~~~~ 77 (424)
-..|+.|++. ++.|.+|++ ++|+....-.........+..++ |+|+|+++++++.+ .|.+|++. +++.....
T Consensus 2 ~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~ 77 (365)
T 1jof_A 2 LHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAMK--KWSSFAVKSPTEIVHEA 77 (365)
T ss_dssp EEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEBT--EEEEEEEEETTEEEEEE
T ss_pred cEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCEEEEEccc--eEEEEEECCCCCEEEee
Confidence 3445555523 357888765 56654322111011223456677 99999998887764 89999987 66543222
Q ss_pred c--CCCCeeEEEECCCCCE--EEEec-------------CCCcEEEEEcc-Ccceeeeec----cccCCeEEEEEccCCc
Q 014475 78 L--PAEPIKPIAANSHGTY--IAGGG-------------QSGDIYMWEVA-SGRLLKKWH----AHYRAVTCLVFSEDGS 135 (424)
Q Consensus 78 ~--~~~~v~~~~~s~~~~~--l~~~~-------------~dg~v~iwd~~-~~~~~~~~~----~~~~~i~~~~~~~~~~ 135 (424)
. ..+.+.+++|+|+|++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|+|+
T Consensus 78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 1 1234677999999994 55553 68999999997 465544443 2456799999999999
Q ss_pred EEEEeeC-CCcEEEEeCC-cccchhcccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecC--C
Q 014475 136 FLISGSE-DGCVRIWSLL-TVFEECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLL--K 208 (424)
Q Consensus 136 ~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~--~ 208 (424)
+++++.. ++.|++||+. ++. ...+..+. .|...+..++|+|++ +++++++. ++.|.+|++. +
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~---------~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGE---------VELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSC---------EEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTT
T ss_pred EEEEEcCCCCEEEEEEECCCCC---------EEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCCC
Confidence 8887654 6799999996 321 11122222 245678899999998 77777664 7899999875 4
Q ss_pred Cceee---eee-cC------c-------ceeEEE-ECCCCCEEEEEeCCC------cEEEEEcCC-CCCCCCCcCceeee
Q 014475 209 GRLLR---NIV-FP------S-------VIDAIA-LDPAEHVFYAGSRDG------SIYIAALNA-ESPSTSSYGMHIIG 263 (424)
Q Consensus 209 ~~~~~---~~~-~~------~-------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~ 263 (424)
++... .+. .+ . .+..++ |+|+|++|+++..+. .|.+|+++. +. ...+.
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~~ 299 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQL 299 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEEE
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEee
Confidence 55421 222 11 1 478999 999999988776433 799999963 32 11111
Q ss_pred -eecccCcCeEEEEecC----CCEEEEeCC-CCcEEEEeCCCC
Q 014475 264 -SLSDHSKAVTCLAYST----GDLLISGSE-DGMVRVWDPITH 300 (424)
Q Consensus 264 -~~~~~~~~i~~~~~~~----~~~l~t~~~-dg~i~iwd~~~~ 300 (424)
....+...+..++|+| +++|++++. ++.|.+|++...
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1333445567788888 788988876 489999998765
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.8e-20 Score=169.38 Aligned_cols=270 Identities=11% Similarity=0.073 Sum_probs=180.3
Q ss_pred eeEEEEEC--CCCceeeee----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc-Ccceeeeeccc-cCCeEEEEEcc
Q 014475 61 GSILYWSW--SKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH-YRAVTCLVFSE 132 (424)
Q Consensus 61 g~i~vwd~--~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~-~~~i~~~~~~~ 132 (424)
+.|.+|++ .+++..... .....+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 45777665 344443221 133478899999999999988887 99999997 77654433211 13356689999
Q ss_pred CCcE--EEEee-------------CCCcEEEEeCCc-ccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEE
Q 014475 133 DGSF--LISGS-------------EDGCVRIWSLLT-VFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 133 ~~~~--l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
++++ ++++. .+|.+.+|++.. +.. ...+..+. .+...+.+++|+|++ ++++++
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~ 162 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--------EKNVQNYEYQENTGIHGMVFDPTE--TYLYSA 162 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE--------EEEEEEEECCTTCCEEEEEECTTS--SEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC--------cceEeeEEeCCCCcceEEEECCCC--CEEEEE
Confidence 9994 45553 688999999863 110 00111111 245678899999998 677766
Q ss_pred e-CCCcEEEEecC-CCcee--eeee---cCcceeEEEECCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCcCceeeeeec-
Q 014475 196 S-EDRTCKVWSLL-KGRLL--RNIV---FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLS- 266 (424)
Q Consensus 196 ~-~d~~v~iwd~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~- 266 (424)
. .++.|.+||+. +++.. ..+. +...+..++|+|+|+++++++. ++.+.+|+++........ ....+..+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~~~ 241 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLIPP 241 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESSCT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-ccceEEcCCC
Confidence 5 46799999998 67643 2333 2456899999999999988775 689999988642110000 000111221
Q ss_pred ---ccCc------CeEEEE-ecC-CCEEEEeCCC-C-----cEEEEeCC-CCcEEE---EEeccCCCeeEEEEEe---cC
Q 014475 267 ---DHSK------AVTCLA-YST-GDLLISGSED-G-----MVRVWDPI-THNIVR---MFRLAKGPVNNILVVR---RP 322 (424)
Q Consensus 267 ---~~~~------~i~~~~-~~~-~~~l~t~~~d-g-----~i~iwd~~-~~~~~~---~~~~~~~~v~~l~~s~---~~ 322 (424)
+|.. .+..++ |+| +++|++++.+ + .|.+|++. +++... .+..+......++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 2222 588999 999 8888776543 2 89999986 666543 2333555678899999 89
Q ss_pred ceeeeccC-CCceeeccCCCC
Q 014475 323 LYLNLGSF-SNPHTSSRRHGS 342 (424)
Q Consensus 323 ~~l~~~~~-d~~i~iw~~~~~ 342 (424)
++|++++. ++.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 99998876 489999998755
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1.5e-19 Score=178.48 Aligned_cols=312 Identities=12% Similarity=0.057 Sum_probs=200.4
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEE--ecceeecCCCccccCCCCc--------eeEEEEECCCCce
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASS--------GSILYWSWSKPQV 73 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~~~--------g~i~vwd~~~~~~ 73 (424)
+|+++ ||+|++||+.+++....+..+......+.. +. |+|||++++.++.+. +.+.+||+.+++.
T Consensus 30 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 30 YLYKQ---ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp EEEEE---TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred EEEEc---CCcEEEEECCCCceEEEEechhhhhhcccccceE--ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 45553 689999999999988777766543333322 55 899999999887641 4567999999887
Q ss_pred eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee-ccccCCe-----------------EEEEEccCCc
Q 014475 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGS 135 (424)
Q Consensus 74 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~~~~ 135 (424)
.....+...+...+|||||+.||.+ .++.|++|++.+++..+.. .++...+ ..+.|+|||+
T Consensus 105 ~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~ 183 (740)
T 4a5s_A 105 ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT 183 (740)
T ss_dssp CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence 6656667889999999999999987 4689999999887754422 2332222 3589999999
Q ss_pred EEEEeeCCC------------------------------------cEEEEeCCc---ccchhcccccccceEEeec----
Q 014475 136 FLISGSEDG------------------------------------CVRIWSLLT---VFEECESQRASHLYLHSFT---- 172 (424)
Q Consensus 136 ~l~s~~~dg------------------------------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~---- 172 (424)
.|+.++.|. .|++||+.+ +.. .....+.
T Consensus 184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~---------~~~~~l~~~~~ 254 (740)
T 4a5s_A 184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN---------ATSIQITAPAS 254 (740)
T ss_dssp EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC---------CCEEEECCCHH
T ss_pred EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc---------ceEEEecCCcc
Confidence 999876432 355555543 210 0111222
Q ss_pred --CCcCceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCCc----ee--eee---ecCcce-----eEEEECCCCCE
Q 014475 173 --GHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGR----LL--RNI---VFPSVI-----DAIALDPAEHV 232 (424)
Q Consensus 173 --~~~~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~----~~--~~~---~~~~~i-----~~~~~~~~~~~ 232 (424)
+|...+..++|+|++ +.++.... +..|.+||+.+++ +. ..+ .+...+ ....|+|||+.
T Consensus 255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 377789999999998 65554432 2369999999887 22 222 133333 37889999998
Q ss_pred EE-EEe-CCC--cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE-ecCCCEEEEeCC----CC--cEEEEeCCCCc
Q 014475 233 FY-AGS-RDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YSTGDLLISGSE----DG--MVRVWDPITHN 301 (424)
Q Consensus 233 l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~t~~~----dg--~i~iwd~~~~~ 301 (424)
++ ..+ .+| .|++||...+. ...+......+..+. ++.+.+++++.. .+ .|...++..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~----------~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD----------CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS----------CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred EEEEEEcCCCceEEEEEECCCCc----------eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 77 555 344 57888887653 223333344555544 332344445544 23 34445555444
Q ss_pred EEEEEec----cCCCeeEEEEEecCceeeeccCC---CceeeccCCCC
Q 014475 302 IVRMFRL----AKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRHGS 342 (424)
Q Consensus 302 ~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~d---~~i~iw~~~~~ 342 (424)
....+.. .........|+|++++++..... ..+.+++..++
T Consensus 403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 3333432 23568899999999987643322 24566666544
No 166
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=7.5e-19 Score=156.72 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=190.0
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
.+.++. |++++..++..+.+ +.++.|. .........+...+.+++|+|++++++++..++.|.+||..+++....
T Consensus 7 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 7 DLPTLF--YSGKSNSAVPIISE-SELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCBCC--SCGGGGCSSCCCCG-GGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccceee--ecCCccceeEEeec-ccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 355666 99999988887666 8999993 222223334556779999999999888888899999999988876554
Q ss_pred eccccCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 118 WHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
...+...+.+++++|+++++++...+ +.|.+||..+... ........+...+.++++++++ .+++
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~~~~~~i~~d~~g--~l~v 150 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---------QDIIEDLSTAYCIDDMVFDSKG--GFYF 150 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---------EEEECSSSSCCCEEEEEECTTS--CEEE
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---------EEEEccCccCCcccceEECCCC--CEEE
Confidence 44566789999999999988877666 6899999865221 1011111234578899999887 6666
Q ss_pred EEeC------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 194 SASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 194 ~~~~------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
+... .+.|..+|..+++..........+..++|+|+++.++++ +.++.|++||.+................+.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 5543 355667776655544333344457899999999866554 567899999996421100000000111122
Q ss_pred ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------CeeEEEEEecCceeeeccCCC
Q 014475 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 267 ~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~~~d~ 332 (424)
++ ..+..+++++ ++++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|..++.++
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 22 4678899999 888887777889999998 5777777765543 689999999987776665554
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=7.4e-20 Score=167.25 Aligned_cols=296 Identities=7% Similarity=-0.120 Sum_probs=193.1
Q ss_pred EEEeCCCCceEEEeeCCCCC--CCceEEecceeecCCCccccCCCCc--eeEEEEECCCCceeeeecCCCCe-eEEEECC
Q 014475 16 GCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPI-KPIAANS 90 (424)
Q Consensus 16 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~~~--g~i~vwd~~~~~~~~~~~~~~~v-~~~~~s~ 90 (424)
...|..+|+.+..+..+... ...+..++ |+|+|+.++.+...+ ..|.+||..+++......+.... ..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~--~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKC--FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCc--CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence 34588888888777554322 11244455 999999988764432 47888899887755443333333 3488999
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEE-------------------EEEccCCcEEEEe-----eCCCcE
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-------------------LVFSEDGSFLISG-----SEDGCV 146 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~s~-----~~dg~i 146 (424)
||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999988889999999888765555434332222 2456666665543 356689
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCC------CcEEEEecCCCceeeeeec--
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVF-- 217 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~-- 217 (424)
.+||+.++. ...+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++......+
T Consensus 171 ~~~d~~~g~------------~~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (396)
T 3c5m_A 171 IKVDIETGE------------LEVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE 236 (396)
T ss_dssp EEEETTTCC------------EEEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred EEEECCCCc------------EEeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence 999986521 112224566788899999 66 666655543 3688889876654333332
Q ss_pred CcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeC---
Q 014475 218 PSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGS--- 287 (424)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~--- 287 (424)
...+..++|+|+++.|+..+.+ +.|++||+.++.. ..+....+ .. +.|+| ++++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 2357889999999987776543 3499999987631 22222221 22 77887 66776643
Q ss_pred -------------CCCcEEEEeCCCCcEEEEEeccCC-----------CeeEEEEEecCceeeeccC-CCceeeccCC
Q 014475 288 -------------EDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGSF-SNPHTSSRRH 340 (424)
Q Consensus 288 -------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~~~-d~~i~iw~~~ 340 (424)
.++.|++||+.+++. ..+..+.. .+..+.|+|+|+.|+.++. ++...+|.+.
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 347899999988764 34444544 2567899999998876654 5666666544
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.85 E-value=2.5e-19 Score=175.04 Aligned_cols=313 Identities=8% Similarity=-0.095 Sum_probs=197.8
Q ss_pred EEEeec--CCCCCceEEEeCCCCceEEEeeCCCCCCC-ce-----EEecceee--cCCCc-cccCCCCceeEEEEECC--
Q 014475 3 LLIASS--SVADTGIGCWDLESGAEQLRYKSCASPPH-GL-----ACVGQRFL--ASSQL-REQPSASSGSILYWSWS-- 69 (424)
Q Consensus 3 ~~lat~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~--~~~~~-l~~~~~~~g~i~vwd~~-- 69 (424)
.++++. + .++...||....+...+.+..+..... .+ .... |+ |||+. |+.+...+..|.+|+..
T Consensus 36 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~SPDg~~~la~~~~~~~~l~~~~~~~~ 112 (662)
T 3azo_A 36 VWWVAPRPA-EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWA--GVPRPAGGPLLVFTHFGDQRLYAFEPDAP 112 (662)
T ss_dssp EEEEEEETT-TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEE--EECCSSSSCEEEEEBTTTCCEEEECTTST
T ss_pred EEEEecCcc-cCCcEEEEEECCCCCcceeCCCCccccccccccCCccce--eeeecCCCeEEEEEECCCCeEEEEcCCCC
Confidence 345555 5 688999999655555556654432211 00 0222 44 99999 88776544788888876
Q ss_pred C-Cceeeeec-----CCCCeeEEEECCCCCEEEEecCC----------CcEEEEEccC------cceeeeec-cccCCeE
Q 014475 70 K-PQVEVKSL-----PAEPIKPIAANSHGTYIAGGGQS----------GDIYMWEVAS------GRLLKKWH-AHYRAVT 126 (424)
Q Consensus 70 ~-~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~i~ 126 (424)
+ ++...... +...+..++|+|||+.|++++.+ ..|++||+.+ ++. ..+. .+...+.
T Consensus 113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 191 (662)
T 3azo_A 113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT 191 (662)
T ss_dssp TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC
T ss_pred CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc
Confidence 3 44333333 45678999999999999998876 5799999987 544 4444 5556788
Q ss_pred EEEEccCCcEEEEeeCC--------CcEEEEeCC-cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC
Q 014475 127 CLVFSEDGSFLISGSED--------GCVRIWSLL-TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 197 (424)
.+.|+|||++|+.++.+ ..|++||+. ++. ..........|...+..+.|+|++ ++++++..
T Consensus 192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------~~~~~~l~~~~~~~~~~~~~spdg--~l~~~~~~ 261 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------FADTRTLLGGPEEAIAQAEWAPDG--SLIVATDR 261 (662)
T ss_dssp CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------EEEEEEEEEETTBCEEEEEECTTS--CEEEEECT
T ss_pred CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------ccccEEeCCCCCceEcceEECCCC--eEEEEECC
Confidence 89999999999988755 379999986 320 001222233456788999999998 67778888
Q ss_pred CC--cEEEEecCCCceeeeeecCcc---------eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 198 DR--TCKVWSLLKGRLLRNIVFPSV---------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 198 d~--~v~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
++ .|.+||+.+++......+... +..++++|++++++++.. +.+++|.++... ..+..+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~--------~~~~~l~ 332 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES--------GELVDAA 332 (662)
T ss_dssp TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT--------TEEEECC
T ss_pred CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC--------CcEEEec
Confidence 88 566677666665443332221 467889999999999998 999999554321 2245566
Q ss_pred ccCcCeEEE-EecCCCEEE-EeCCCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 267 DHSKAVTCL-AYSTGDLLI-SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 267 ~~~~~i~~~-~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
.|...+..+ +++++.+++ +++.+. .|.+||+.+++.......+...+....+.+.....+.+..+..+..|-
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEE
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEE
Confidence 677777777 555443443 344443 466667777775544444433333333333333333333333444443
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=5.7e-18 Score=150.57 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=184.3
Q ss_pred CCCeeEEEECCCCCEEEEecCC------------------------CcEEEEEccCcceeeeec-cccCCeEEEEEccCC
Q 014475 80 AEPIKPIAANSHGTYIAGGGQS------------------------GDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDG 134 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~d------------------------g~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~ 134 (424)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+...+..++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888776 479999998888876654 445678999999999
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEee---------cCCcCceeEEEEEE-cCceeEEEEEe-CCCcEEE
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---------TGHTLRITDIVIGY-GGVSATIVSAS-EDRTCKV 203 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~~~l~~~~-~d~~v~i 203 (424)
+++++...++.|++||..... ..+..+ ..+......+++++ ++ .++++.+ .++.|++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~----------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE----------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCNSRIVQ 170 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS----------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSSCCEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCe----------EEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCCCCeEEE
Confidence 988888889999999985421 011122 23445688999998 66 6777775 6899999
Q ss_pred EecCCCceeeeeecC-----------cceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee--cccC
Q 014475 204 WSLLKGRLLRNIVFP-----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHS 269 (424)
Q Consensus 204 wd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~ 269 (424)
|| .+++.+..+... .....++++|+ +.++++...++.|++|+..++ +.+..+ ..+.
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~~~~~~~~~ 240 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVREIKHASFG 240 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEEECCTTTT
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEEEEeccccC
Confidence 99 567776666421 23789999998 777777778889999999855 333333 3456
Q ss_pred cCeEEEEecCCCEEEEeC-------CCCcEEEEeCCCCcEEEEEe---ccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 270 KAVTCLAYSTGDLLISGS-------EDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 270 ~~i~~~~~~~~~~l~t~~-------~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
..+..++++|+..+++.+ .+..|++||..+++.+..+. .+......++++|+|..+++...++.|++|++
T Consensus 241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 678888888843443333 34589999999999999884 56667899999999988899999999999998
Q ss_pred CCC
Q 014475 340 HGS 342 (424)
Q Consensus 340 ~~~ 342 (424)
.+.
T Consensus 321 ~~~ 323 (329)
T 3fvz_A 321 TEK 323 (329)
T ss_dssp EEC
T ss_pred Ccc
Confidence 754
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.6e-17 Score=144.79 Aligned_cols=236 Identities=9% Similarity=0.171 Sum_probs=176.5
Q ss_pred CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec------cccCCeEEEEE-ccCCcEEEEeeC-CCcEEEEe
Q 014475 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVF-SEDGSFLISGSE-DGCVRIWS 150 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~i~~~~~-~~~~~~l~s~~~-dg~i~iwd 150 (424)
+...+.+++++++++++++...++.|.+||.. ++.+..+. ++...+..+++ .++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44578999999999988888888999999976 65555553 24467899999 467776666643 78999999
Q ss_pred CCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEE
Q 014475 151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL 226 (424)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~ 226 (424)
... ..+..+. .+...+.++++.+++ +++++...++.|.+||.. ++.+..+. ....+..+++
T Consensus 107 ~~g------------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 107 QYG------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp TTS------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred CCC------------cEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence 532 1122222 244567889998887 777777778999999964 55565554 2346889999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--cCcCeEEEEecC-CCEEEEeCCCC-cEEEEeCCCCcE
Q 014475 227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNI 302 (424)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~l~t~~~dg-~i~iwd~~~~~~ 302 (424)
+|+++++++...++.|++||.... .+..+.. +...+..+++++ ++++++...++ .|.+||. +++.
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~ 240 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL 240 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred CCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE
Confidence 999998887788999999997542 2333332 336789999999 88888887776 9999995 5777
Q ss_pred EEEEeccCC--CeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 303 VRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 303 ~~~~~~~~~--~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+..+..+.. .+.+++++|+|+++++ +.|+.|++|+....
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 887776543 4779999999987777 57999999998644
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.6e-18 Score=154.54 Aligned_cols=258 Identities=10% Similarity=0.026 Sum_probs=178.9
Q ss_pred ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccc------cC
Q 014475 60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH------YR 123 (424)
Q Consensus 60 ~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~------~~ 123 (424)
|+.|.+||..+++........... .++|+||+++++++. .++.|.+||..+++.+..+... ..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 389999999888765443333333 899999999999886 2567999999998888777532 34
Q ss_pred CeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEEEEEEcCceeEEEEEeCCCc
Q 014475 124 AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~ 200 (424)
....++++|+|++|+++.. ++.|.+||+.+. ..+.. +.. . ....+.+.|++. ..+++.+.||.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-----------~~~~~~i~~-~-~~~~v~~~p~~~-~~~~~~~~dg~ 174 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-----------DYVEDVTAA-A-GCWSVIPQPNRP-RSFMTICGDGG 174 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----------EEEEEEGGG-T-TEEEEEECTTSS-SEEEEEETTSS
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCC-----------cEEEEEecC-C-CcceeEEcCCCC-eeEEEECCCCc
Confidence 5678999999999998864 578999999663 22333 221 1 112244556553 57788889999
Q ss_pred EEEEecCC-Cceeeee------ecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec------c
Q 014475 201 CKVWSLLK-GRLLRNI------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS------D 267 (424)
Q Consensus 201 v~iwd~~~-~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~ 267 (424)
+.+|+... ++..... ........+..+|++..++..+.++.+.++|+..... .....+. .
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDK 247 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHH
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-------eecccccccCcccc
Confidence 99999865 5544211 1111112233356677777778889999999975431 1111110 0
Q ss_pred c----CcCeEEEEecC-CCEEEEeCC-----------CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475 268 H----SKAVTCLAYST-GDLLISGSE-----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 268 ~----~~~i~~~~~~~-~~~l~t~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
+ ......++++| ++.++++.. .+.|.+||+.+++.+.++..+. ..+++|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 0 11112367888 666665432 3489999999999999999876 999999999999998886
Q ss_pred CceeeccCCCC
Q 014475 332 NPHTSSRRHGS 342 (424)
Q Consensus 332 ~~i~iw~~~~~ 342 (424)
+.|.+||..+.
T Consensus 325 ~~v~v~D~~t~ 335 (361)
T 2oiz_A 325 GNVNVYDISQP 335 (361)
T ss_dssp SCEEEEECSSS
T ss_pred CeEEEEECCCC
Confidence 99999999877
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=3.2e-17 Score=154.86 Aligned_cols=320 Identities=11% Similarity=0.055 Sum_probs=223.3
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceeeeecCC
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPA 80 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~~~~~~ 80 (424)
.++++.. .+++|.++|..+++.+.++.... .+..+. |+|+|+++++++.+ +.|.+||+. +.+........
T Consensus 168 ~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~----~p~~v~--~SpDGr~lyv~~~d-g~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 168 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred eEEEEeC-CCCeEEEEECCCCeEEEEEeCCC----CccceE--ECCCCCEEEEEcCC-CeEEEEECCCCCCcEeEEEecC
Confidence 4566777 89999999999999999887432 345666 99999999988876 999999995 66655554455
Q ss_pred CCeeEEEEC----CCCCEEEEecC-CCcEEEEEccCcceeeeecc----------ccC-CeEEEEEccCCcE-EEEeeCC
Q 014475 81 EPIKPIAAN----SHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGSF-LISGSED 143 (424)
Q Consensus 81 ~~v~~~~~s----~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~-l~s~~~d 143 (424)
.....++|+ |||++++++.. +++|.++|..+.+.+..+.. |.. .+..+..++++.. ++....+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 667899999 69999888765 48999999999988877642 112 5778888887554 4555567
Q ss_pred CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE-eCCCcEEEEecCCCceeeeeec-C---
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIVF-P--- 218 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~-~--- 218 (424)
|.|.++|..+. ....+..+. ......++.|++++ ++++++ ..++.|.++|+.+++....+.. .
T Consensus 320 g~v~~vd~~~~---------~~~~v~~i~-~~~~~~d~~~~pdg--r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 320 GKILLVDYTDL---------NNLKTTEIS-AERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp TEEEEEETTCS---------SEEEEEEEE-CCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CeEEEEecCCC---------ccceeeeee-ccccccCceECCCC--CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 99999998652 111222222 23345678899988 665554 4678999999999988776654 2
Q ss_pred cceeEEE-ECCCCCEEE-EEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC------
Q 014475 219 SVIDAIA-LDPAEHVFY-AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------ 288 (424)
Q Consensus 219 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~------ 288 (424)
.+-.... ++|++..++ ++. .++.|.++|...... ....++.+..+......-..+..+| ++++.+...
T Consensus 388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~--~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH--PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred CCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC--ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 1111222 578755554 443 468999999987431 1222456666665444445577889 788777653
Q ss_pred -CCcEEEEeCCCC-----c-EEEEEec--------cCCCeeEEEEEecCceeeecc-----CCCceeeccCCCCCC
Q 014475 289 -DGMVRVWDPITH-----N-IVRMFRL--------AKGPVNNILVVRRPLYLNLGS-----FSNPHTSSRRHGSQL 344 (424)
Q Consensus 289 -dg~i~iwd~~~~-----~-~~~~~~~--------~~~~v~~l~~s~~~~~l~~~~-----~d~~i~iw~~~~~~~ 344 (424)
.++|.++|+.+. . ....+.. ....+..+.|+|+|+++..+. .++.|.++|..+.++
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 358999999876 2 1233321 134788999999999886652 378899999887754
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.6e-18 Score=154.95 Aligned_cols=236 Identities=10% Similarity=0.008 Sum_probs=163.7
Q ss_pred EEECCCCCEEEEecC-CC--cEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 86 IAANSHGTYIAGGGQ-SG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 86 ~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
.+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+||++.|+.++.++.|++||+.++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~------- 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE------- 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-------
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence 789999999998877 66 48889999888777776666666677899999999999999999999997632
Q ss_pred cccceEEeecCCcCceeEEEE--EEcCceeEEEEE----------------------eCCCcEEEEecCCCceeeeeecC
Q 014475 163 ASHLYLHSFTGHTLRITDIVI--GYGGVSATIVSA----------------------SEDRTCKVWSLLKGRLLRNIVFP 218 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~----------------------~~d~~v~iwd~~~~~~~~~~~~~ 218 (424)
.......+...+....+ ++++ ..++.. ..+..|.+||+.+++......+.
T Consensus 114 ----~~~~~~~~~~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 187 (388)
T 3pe7_A 114 ----ENVVYQVPAEWVGYGTWVANSDC--TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN 187 (388)
T ss_dssp ----EEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred ----ceeeeechhhcccccceeECCCC--CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence 12223334444444444 4555 566532 24467999999998876666677
Q ss_pred cceeEEEECC-CCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeecccC--cCeEEEEecC-CCEEEEeCC
Q 014475 219 SVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHS--KAVTCLAYST-GDLLISGSE 288 (424)
Q Consensus 219 ~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~l~t~~~ 288 (424)
..+..++|+| +++.++....+ ..|.++|..... ...+..+. ..+...+|+| ++.|+..+.
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccccceECCCCCEEEEEec
Confidence 7899999999 99988877653 378888876643 22233333 3577889999 876655432
Q ss_pred -C----CcEEEEeCCCCcEEE--EEeccCC---CeeEEEEEecCceeeec---------cCCCceeeccCCCCCC
Q 014475 289 -D----GMVRVWDPITHNIVR--MFRLAKG---PVNNILVVRRPLYLNLG---------SFSNPHTSSRRHGSQL 344 (424)
Q Consensus 289 -d----g~i~iwd~~~~~~~~--~~~~~~~---~v~~l~~s~~~~~l~~~---------~~d~~i~iw~~~~~~~ 344 (424)
+ ..|++||+.+++... .+..+.. ....+.|+|||+.|+.. ..+..|++|++.+++.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 2 239999999987433 3332110 12234799999998864 4566899999987653
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=2.2e-18 Score=170.23 Aligned_cols=284 Identities=10% Similarity=0.010 Sum_probs=180.2
Q ss_pred EecceeecCCCccccCCCCceeEEEEECCCCceeee-ecCCC-----CeeEEEECCCCCEEEEecCC---------CcEE
Q 014475 41 CVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE-----PIKPIAANSHGTYIAGGGQS---------GDIY 105 (424)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-~~~~~-----~v~~~~~s~~~~~l~~~~~d---------g~v~ 105 (424)
.+. |+|+|++++++ + |.|++||+.+++.... ..+.. ....++|||||++|+.++.+ +.+.
T Consensus 21 ~~~--w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 21 SLR--WISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CEE--ECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccE--ECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 445 99999988886 4 9999999998875433 22321 22448899999999998875 5678
Q ss_pred EEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc---------C
Q 014475 106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------L 176 (424)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 176 (424)
+||+.+++.. .+..|...+...+|+|||+.|+.+. ++.|++|++.++....-...... ...+.++. .
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~--~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE--DIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT--TTEEESBCCHHHHHHTSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc--cceecCcccccccchhcC
Confidence 9999998754 4666778899999999999998885 67999999976432110000000 00112222 2
Q ss_pred ceeEEEEEEcCceeEEEEEeCCC------------------------------------cEEEEecCC---Cc--eeeee
Q 014475 177 RITDIVIGYGGVSATIVSASEDR------------------------------------TCKVWSLLK---GR--LLRNI 215 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~------------------------------------~v~iwd~~~---~~--~~~~~ 215 (424)
....+.|+|++ +.|+.++.|. .|.+||+.+ ++ ....+
T Consensus 172 ~~~~~~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 172 AYSALWWSPNG--TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSBCEEECTTS--SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred CCcceEECCCC--CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 22458899998 7777765321 488899988 73 12223
Q ss_pred e-------cCcceeEEEECCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCcCceeeeee--cccCcCeE-----EEEe
Q 014475 216 V-------FPSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT-----CLAY 277 (424)
Q Consensus 216 ~-------~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~~~~ 277 (424)
. +...+..++|+|+|+.++.... +..|++||+.++..... ...+..+ ..|...|. ...|
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccCcCCCceE
Confidence 2 4556889999999997665543 23799999988641000 0001111 34554444 6789
Q ss_pred cC-CCEEE-EeC-CCC--cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeee-ccC----CCceeeccCC
Q 014475 278 ST-GDLLI-SGS-EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL-GSF----SNPHTSSRRH 340 (424)
Q Consensus 278 ~~-~~~l~-t~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~----d~~i~iw~~~ 340 (424)
+| |+.|+ ..+ .+| .|.+||+..++.. .+......|..+.. +|++.|+. ++. .+...+|.+.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 99 87766 554 344 5888998876554 34434556666543 44665544 333 2445555543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=5e-18 Score=165.85 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=184.2
Q ss_pred CCceEEecceeecCCCccccC--CCCceeEEEEECC-CCceeeeecCCCCee---------EEEEC--CCCCE-EEEecC
Q 014475 36 PHGLACVGQRFLASSQLREQP--SASSGSILYWSWS-KPQVEVKSLPAEPIK---------PIAAN--SHGTY-IAGGGQ 100 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~--~~~~g~i~vwd~~-~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~~~~ 100 (424)
...+..++ ++++..+++.. ..+ +...||... .++......+...+. ...|+ |||+. |+.++.
T Consensus 23 ~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 23 SGRPACVG--AVGDEVWWVAPRPAEA-GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp CSCCEEEE--EETTEEEEEEEETTTT-TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred CCccceeE--EcCCeEEEEecCcccC-CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 35567777 88876666665 444 889999853 333333334444555 56565 99998 776543
Q ss_pred -CCcEEEEEcc--Ccceeeeecc-----ccCCeEEEEEccCCcEEEEeeCC----------CcEEEEeCCcccchhcccc
Q 014475 101 -SGDIYMWEVA--SGRLLKKWHA-----HYRAVTCLVFSEDGSFLISGSED----------GCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 101 -dg~v~iwd~~--~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~ 162 (424)
+..|.++++. .......+.. |...+..++|+|||+.|++++.+ ..|++||+.+....
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----- 174 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----- 174 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT-----
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc-----
Confidence 5667777765 2033444544 56678999999999999988876 58999998651000
Q ss_pred cccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecC-CC---ceeeeee-cCcceeEEEECC
Q 014475 163 ASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLL-KG---RLLRNIV-FPSVIDAIALDP 228 (424)
Q Consensus 163 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~~-~~~~i~~~~~~~ 228 (424)
... ....+. .+...+..++|+|++ +.|+.++.+ ..|.+||+. ++ +...... +...+..+.|+|
T Consensus 175 ~~~-~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 175 DRS-AVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp CGG-GSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred cCC-ceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 001 112333 455678889999999 788877754 379999998 56 3333333 367899999999
Q ss_pred CCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceeeeeecccCcC--------eEEEEecC-CCEEEEeCCCCcEEEE--
Q 014475 229 AEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKA--------VTCLAYST-GDLLISGSEDGMVRVW-- 295 (424)
Q Consensus 229 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~-~~~l~t~~~dg~i~iw-- 295 (424)
+|++++++..++ .|++||..++. .......+... +..++|+| +.++++++. +.++||
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCeEEEEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999888888888 55555554432 11111122111 56788988 889999988 999999
Q ss_pred eCCCCcEEEEEeccCCCeeEE-EEEecCceeeeccCCCc--eeeccCCCCC
Q 014475 296 DPITHNIVRMFRLAKGPVNNI-LVVRRPLYLNLGSFSNP--HTSSRRHGSQ 343 (424)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l-~~s~~~~~l~~~~~d~~--i~iw~~~~~~ 343 (424)
|+.+++ +..+..|.+.+..+ +++.+...+++++.+.. +..|++.+++
T Consensus 322 d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 322 DPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 655554 67787787777766 44333333445555554 4444554443
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=3.3e-17 Score=146.93 Aligned_cols=251 Identities=13% Similarity=0.098 Sum_probs=169.6
Q ss_pred CCCccccCC--------CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---C--cEEEEEccCccee
Q 014475 49 SSQLREQPS--------ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G--DIYMWEVASGRLL 115 (424)
Q Consensus 49 ~~~~l~~~~--------~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g--~v~iwd~~~~~~~ 115 (424)
+|+.++... ..++.|.+||+.+++.... ..+..++|||||++|+.++.+ + .|.+|++.+++..
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK 98 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE
Confidence 777766542 1137899999988765433 678899999999999887654 2 3888898887765
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeCC---------------------------CcEEEEeCCcccchhcccccccceE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSED---------------------------GCVRIWSLLTVFEECESQRASHLYL 168 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~ 168 (424)
.....+ . +..+.|+|+++.|+.++.+ ..|.+||+.++. .+
T Consensus 99 ~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-----------~~ 165 (347)
T 2gop_A 99 KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-----------VI 165 (347)
T ss_dssp EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-----------EE
T ss_pred EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-----------EE
Confidence 544433 3 9999999999998887642 568899986521 11
Q ss_pred EeecCCcCceeEEEEEEcCceeEEEEEeCCC-------cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCC--
Q 014475 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDR-------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-- 239 (424)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 239 (424)
..+.. . .+..+.|+|++ +++++..++ ...+|.+.+++......+ ..+.. ++|+|+.++.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSS
T ss_pred eeecC-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEcccc
Confidence 22222 2 67788999875 556665442 345554445544333233 44444 38999988877754
Q ss_pred ------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC
Q 014475 240 ------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 240 ------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (424)
..|++|| ++ +.......|...+.. +.|+ +.++++++.++.++|| +.+++... +..+.+.
T Consensus 238 ~~~~~~~~l~~~d--~~---------~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~ 303 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---------EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIKP-IAKGRHW 303 (347)
T ss_dssp SCCCSSCEEEEEC--SS---------CEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEEE-EECSSSE
T ss_pred CCccccceEEEEC--CC---------ceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceEE-EecCCCe
Confidence 3577777 32 223334456677876 8898 4488888999999999 88666544 4445788
Q ss_pred eeEEEEEecCceeeeccCCCce-eeccCC
Q 014475 313 VNNILVVRRPLYLNLGSFSNPH-TSSRRH 340 (424)
Q Consensus 313 v~~l~~s~~~~~l~~~~~d~~i-~iw~~~ 340 (424)
|.+++|+| .++++++.++.. .+|.+.
T Consensus 304 v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 304 IMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999999 566676666654 777765
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=3.7e-17 Score=146.56 Aligned_cols=251 Identities=7% Similarity=0.062 Sum_probs=170.8
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEE
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIA 87 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~ 87 (424)
++.|.+||+.+++.. .+ ..+..+. |+|+|+.|+.++.+ ...|.+|++.+++......... +..++
T Consensus 42 ~~~l~~~d~~~~~~~-~l-------~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ 110 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-------ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLE 110 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-------ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEE
T ss_pred cceEEEEeCCCCceE-Ec-------ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cccee
Confidence 678999999988754 33 2356666 99999999987643 1358888988876554443444 99999
Q ss_pred ECCCCCEEEEecCC---------------------------CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 88 ANSHGTYIAGGGQS---------------------------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 88 ~s~~~~~l~~~~~d---------------------------g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
|+|||+.|+.++.+ ..|++||+.+++.+..+.. . .+..+.|+|++ .++++
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence 99999999887632 5699999988876455544 3 78899999999 77777
Q ss_pred eCCC-------cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEe
Q 014475 141 SEDG-------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWS 205 (424)
Q Consensus 141 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd 205 (424)
..++ ...+|.+.++ . ...+..+ ..+..+ +|++ +.|+.++.+ ..|.+||
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~---------~---~~~l~~~-~~~~~~--spdg--~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDG---------K---EEKMFEK-VSFYAV--DSDG--ERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETT---------E---EEEEEEE-ESEEEE--EECS--SCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ecccccccccccccEEEeCCC---------c---eEEeccC-cceeeE--CCCC--CEEEEEEccccCCccccceEEEEC
Confidence 6542 3455544221 1 1122222 344433 8888 677666643 3688888
Q ss_pred cCCCceeeeee-cCcceeE-EEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEE
Q 014475 206 LLKGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (424)
Q Consensus 206 ~~~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 283 (424)
+++...... +...+.. +.|+ ++ ++++++.++.+++| +.++ +. ..+..+...|.+++|+| .++
T Consensus 251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~-~~~ 314 (347)
T 2gop_A 251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE-IVV 314 (347)
T ss_dssp --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS-SEE
T ss_pred --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC-cEE
Confidence 555443333 4567776 8999 88 88899999999999 8732 22 23334577899999999 888
Q ss_pred EEeCCCCcE-EEEeCCCCcEEEEEeccCC
Q 014475 284 ISGSEDGMV-RVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 284 ~t~~~dg~i-~iwd~~~~~~~~~~~~~~~ 311 (424)
++++.++.. .+|.+. ++ ...+..|+.
T Consensus 315 ~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 315 YLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 888777664 777766 54 444555544
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=1.3e-16 Score=138.98 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=170.6
Q ss_pred CCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee------cCCCCeeEEEE-CCCCCEEEEecC-CCcEEE
Q 014475 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAA-NSHGTYIAGGGQ-SGDIYM 106 (424)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~~~~~-dg~v~i 106 (424)
+......++ ++++++++++...+ +.|.+||.+........ .+...+..+++ .++++++++... ++.|.+
T Consensus 28 ~~~~p~~v~--~~~~g~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVA--VNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp CBSCEEEEE--ECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred ccCCCceEE--ECCCCCEEEEECCC-CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 345567777 99999877776665 89999998744322211 12356889999 578877777643 789999
Q ss_pred EEccCcceeeeec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEE
Q 014475 107 WEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVI 183 (424)
Q Consensus 107 wd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~ 183 (424)
|| .+++.+..+. .+...+.+++++|+++++++...++.|.+||... .....+ ..+...+..+++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEE
Confidence 99 5677666663 3446789999999999888877888999999642 112222 234456889999
Q ss_pred EEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---cceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCc
Q 014475 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGM 259 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 259 (424)
++++ +++++...++.|++||. +++.+..+... ..+..++++|+++++++...++ .|.+||...
T Consensus 172 ~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------- 238 (286)
T 1q7f_A 172 NDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------- 238 (286)
T ss_dssp CSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------
T ss_pred CCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----------
Confidence 9987 77777778899999997 45555555432 5688999999999888887776 999999654
Q ss_pred eeeeeecccC--cCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 260 HIIGSLSDHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 260 ~~~~~~~~~~--~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+.+..+..+. ..+.+++++| ++++++ +.|+.|++|++....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 2233333332 3478999999 776666 569999999986543
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=1.7e-16 Score=140.94 Aligned_cols=279 Identities=8% Similarity=-0.035 Sum_probs=190.2
Q ss_pred CCCceEEEeCCCCceEEEeeC---CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEE
Q 014475 11 ADTGIGCWDLESGAEQLRYKS---CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIA 87 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~ 87 (424)
.+++|.++|.++++....+.. ...-......+. +. +++..++... ++.|.+||..+.+.............++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~~-~~~lyv~~~~-~~~v~viD~~t~~~~~~i~~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--IR-DGIGWIVVNN-SHVIFAIDINTFKEVGRITGFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--EE-TTEEEEEEGG-GTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--EE-CCEEEEEEcC-CCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence 389999999999987765421 011112234444 42 3444444443 4999999999888765555567889999
Q ss_pred ECCCCCEEEEecCCCcEEEEEccCcceeeeecccc-----CCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccc
Q 014475 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-----RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 88 ~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~ 161 (424)
++++++.+++...++.|.+||+.+++....+.... .....+++ .+++.+++.. .++.|.++|+.++.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~------ 163 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK------ 163 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE------
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe------
Confidence 99998655555478999999999998877665433 14556777 4454444443 48899999997632
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC----------CcEEEEecCCCceeeeeec--CcceeEEEECCC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----------RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPA 229 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----------~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~ 229 (424)
....+... .....+++++++ ++++++..+ +.|.++|..+++....+.. ......++++|+
T Consensus 164 -----~~~~i~~g-~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 164 -----VVDELTIG-IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp -----EEEEEECS-SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred -----EEEEEEcC-CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence 22223222 234577888877 666666554 7899999999988877764 346899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEe----CCCCcEEEEeCCCCcEE
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG----SEDGMVRVWDPITHNIV 303 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~----~~dg~i~iwd~~~~~~~ 303 (424)
++.++++.. .|.+||..++..... .....+......++++| +.++++. ..++.|.+||.. ++.+
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~-------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVR-------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSS-------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeee-------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 999988765 899999987653110 11111246688999998 5666666 678999999988 9999
Q ss_pred EEEeccCCCeeEEEEE
Q 014475 304 RMFRLAKGPVNNILVV 319 (424)
Q Consensus 304 ~~~~~~~~~v~~l~~s 319 (424)
.++..-.. -..++|-
T Consensus 306 ~~i~~G~~-P~~~~~~ 320 (328)
T 3dsm_A 306 DEFYVGII-PGAFCWK 320 (328)
T ss_dssp EEEEEEES-EEEEEEE
T ss_pred EEEEeccC-cceEEEe
Confidence 98874333 2455553
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.79 E-value=4.8e-17 Score=159.95 Aligned_cols=279 Identities=11% Similarity=0.032 Sum_probs=188.0
Q ss_pred ecCCCccccCCCCc----eeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEEEecCCC-----cEEEEEcc
Q 014475 47 LASSQLREQPSASS----GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSG-----DIYMWEVA 110 (424)
Q Consensus 47 ~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg-----~v~iwd~~ 110 (424)
.|+|++++....+. +.+.+.+...++..... .+...+..++|||||++||.+..++ .|++||+.
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 36777666543221 23444444333332211 1223588999999999999775533 89999999
Q ss_pred CcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc----------------EEEEeCCcccchhcccccccceEEeecCC
Q 014475 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC----------------VRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
+++.......+ ..+..++|+||++.|+.++.++. |++|++.++.. ....+.....|
T Consensus 160 tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~~v~~~~~~ 231 (710)
T 2xdw_A 160 GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-------EDILCAEFPDE 231 (710)
T ss_dssp TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-------GCEEEECCTTC
T ss_pred CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-------cceEEeccCCC
Confidence 99876543322 23678999999999999888766 99999966321 11223333345
Q ss_pred cCceeEEEEEEcCceeEEEEEeC-----CCcEEEEecCC------Cc-eeeeee-cCcceeEEEECCCCCEEEEEeCC--
Q 014475 175 TLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLK------GR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRD-- 239 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~------~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d-- 239 (424)
...+..+.|+|++ ++|+.++. +..|.+||+.+ +. ....+. +...+.. .|+|+|..|+..+..
T Consensus 232 ~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 232 PKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp TTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred CeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCC
Confidence 5667889999998 67776654 56899999986 43 244444 3344433 588888888776653
Q ss_pred --CcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeEEEEecC-CCEEEEeCCCCc--EEEEeCCCCcEEEEEeccCCC
Q 014475 240 --GSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGM--VRVWDPITHNIVRMFRLAKGP 312 (424)
Q Consensus 240 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~-~~~l~t~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 312 (424)
+.|.+||+.+... .....+..|.. .+..+.|++ +.++++...|+. |.+||+.+++.+..+..+.+.
T Consensus 309 ~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~ 381 (710)
T 2xdw_A 309 PNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS 381 (710)
T ss_dssp TTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred CCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence 3599999877521 01223334433 678899987 778888888874 667788788888888888888
Q ss_pred eeEEEEEecCceeee----ccCCCceeeccCCCCC
Q 014475 313 VNNILVVRRPLYLNL----GSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 313 v~~l~~s~~~~~l~~----~~~d~~i~iw~~~~~~ 343 (424)
+..+.++|++..++. ....+.+..||+.+++
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 999999999876652 3355789999988765
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.8e-16 Score=140.93 Aligned_cols=238 Identities=13% Similarity=0.146 Sum_probs=176.5
Q ss_pred CCceEEecceeecCCCccccCCCCc-----------------------eeEEEEECCCCceeeeec--CCCCeeEEEECC
Q 014475 36 PHGLACVGQRFLASSQLREQPSASS-----------------------GSILYWSWSKPQVEVKSL--PAEPIKPIAANS 90 (424)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~~~-----------------------g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~ 90 (424)
...+..++ ++|+|+++++...+. +.|.+||..+++...... +...+..++++|
T Consensus 23 l~~v~~va--~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVA--LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEE--ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred cCCceEEE--ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 35577788 999998877665541 379999998777654433 345789999999
Q ss_pred CCCEEEEecCCCcEEEEEccCcc-eeeee---------ccccCCeEEEEEcc-CCcEEEEee-CCCcEEEEeCCcccchh
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGR-LLKKW---------HAHYRAVTCLVFSE-DGSFLISGS-EDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~ 158 (424)
+|+++++...++.|++||..... .+..+ ..+...+..++++| ++.++++.+ .++.|++||....
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~---- 176 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK---- 176 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC----
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC----
Confidence 99988888888999999975442 44444 24455789999999 788888876 6899999995321
Q ss_pred cccccccceEEeec----------CCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEE
Q 014475 159 ESQRASHLYLHSFT----------GHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAI 224 (424)
Q Consensus 159 ~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~ 224 (424)
.+..+. ++-.....++++++ + .++++...++.|++||..+++.+..+. +...+..+
T Consensus 177 --------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 177 --------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp --------EEEEECEECCSSSCCTTEESCEEEEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred --------EEEEeccCCCCCCCCCcccCCCcEEEEECCCC--EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 122221 12234788999988 5 788888889999999998888888775 44678889
Q ss_pred EECCCCCEEEE-------EeCCCcEEEEEcCCCCCCCCCcCceeeeee---cccCcCeEEEEecC-CCEEEEeCCCCcEE
Q 014475 225 ALDPAEHVFYA-------GSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVR 293 (424)
Q Consensus 225 ~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~t~~~dg~i~ 293 (424)
+++| +..+.+ ...+..+++|+..++. .+..+ .++...+..++++| +.++++...++.|+
T Consensus 247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 9999 433333 3344589999998763 34444 35677799999999 88888888999999
Q ss_pred EEeCCC
Q 014475 294 VWDPIT 299 (424)
Q Consensus 294 iwd~~~ 299 (424)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.78 E-value=1.7e-16 Score=138.94 Aligned_cols=231 Identities=13% Similarity=0.015 Sum_probs=165.7
Q ss_pred CCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccch
Q 014475 79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (424)
Q Consensus 79 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 157 (424)
......+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++|+++++++...++.|.+||..++...
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 345678999999998 7888888999999999877 5666667788999999999998877777789999998653210
Q ss_pred hcccccccceEEeecC-CcCceeEEEEEEcCceeEEEE----Ee-------------CCCcEEEEecCCCceeeeeecCc
Q 014475 158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----AS-------------EDRTCKVWSLLKGRLLRNIVFPS 219 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~----~~-------------~d~~v~iwd~~~~~~~~~~~~~~ 219 (424)
........ ....+.++++++++ +++++ ++ ..+.|..++.. ++.........
T Consensus 104 --------~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 104 --------SIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV 172 (296)
T ss_dssp --------EEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred --------EEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence 00111111 12356788998887 67776 32 13456666655 54443334556
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEcCC-CCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
....++|+|+++.+++.+.++.|++|++.. +... .....+..+...+..+++++ ++++++. ++.|.+||.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 678999999999987777789999999973 2100 00111233456677899999 7766666 788999998
Q ss_pred CCCcEEEEEeccCCCeeEEEEE-ecCceeeeccCCC
Q 014475 298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSN 332 (424)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~~~d~ 332 (424)
. ++.+..+..+.. +++++|. |+++.|.+++.++
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 6 888888887777 9999995 8888888887764
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.77 E-value=6.6e-15 Score=128.77 Aligned_cols=274 Identities=7% Similarity=-0.021 Sum_probs=190.8
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 114 (424)
..+.+++ +.++|+..++...+ +.|.+||.. ++..... .....+.++++++++.++++...++.|..||.. ++.
T Consensus 15 ~~~~~i~--~d~~g~l~v~~~~~-~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 15 TGPYGIT--VSDKGKVWITQHKA-NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCccceE--ECCCCCEEEEecCC-CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 4567777 88999877766655 899999988 5544322 235679999999999988887778889999976 332
Q ss_pred e-eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 115 L-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 115 ~-~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
. ..+......+..+++.++++++++...++.|..||. ++. ............+..+++.+++ ...+
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~----------~~~~~~~~~~~~~~~i~~~~~g--~l~v 156 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK----------IREYELPNKGSYPSFITLGSDN--ALWF 156 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----------EEEEECSSTTCCEEEEEECTTS--CEEE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC----------EEEecCCCCCCCCceEEEcCCC--CEEE
Confidence 1 122234567899999999988887777889999998 311 1111122344567888888776 6666
Q ss_pred EEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcC
Q 014475 194 SASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (424)
+...++.|..||. +++.... .. ....+..+++++++.++++...++.|..||. ++. ........+...
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~ 226 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--------ITEFKIPTPNAR 226 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCC
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--------EEEEECCCCCCC
Confidence 6666789999998 6655432 11 3356789999999987776667889999998 442 111122335567
Q ss_pred eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEE--eccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+.++++++ ++++++...++.|..||. +++ +..+ ..+...+.++++ +++...++.+ .+.+..++..+.
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 89999998 787777767889999998 454 3333 234467899999 8888777655 455666665543
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.77 E-value=2.5e-17 Score=161.49 Aligned_cols=279 Identities=10% Similarity=-0.012 Sum_probs=186.2
Q ss_pred eecCCCccccCCCCc----eeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEE-----EecCCCcEEEEEc
Q 014475 46 FLASSQLREQPSASS----GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIA-----GGGQSGDIYMWEV 109 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~-----~~~~dg~v~iwd~ 109 (424)
..|+|++++....+. +.|.+.+...++..... .|...+..++|||||++|| .|+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 457788777665442 23444444444333222 1334689999999999999 4445578999999
Q ss_pred cCcceeeeeccccCCe--EEEEEccCCcEEEEeeCCCc-------------EEEEeCCcccchhcccccccceEEeecCC
Q 014475 110 ASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFEECESQRASHLYLHSFTGH 174 (424)
Q Consensus 110 ~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (424)
.+++.+.. .+...+ ..++|+|||+.|+.++.|.. |++|++.++.. ....+.....+
T Consensus 155 ~tg~~~~~--~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~lv~~~~~~ 225 (695)
T 2bkl_A 155 DSGEWSKV--DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-------KDTVVHERTGD 225 (695)
T ss_dssp TTCCBCSS--CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-------GCEEEECCCCC
T ss_pred CCCCCcCC--cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-------hceEEEecCCC
Confidence 99886511 122222 67999999999999988766 99999976321 12234444456
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCC----cEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC----CCcEEEEE
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR----DGSIYIAA 246 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d 246 (424)
...+..+.|+|++ ++|+.++.++ .|.+||..+++......+...+....+ +++. ++..+. ++.|.+||
T Consensus 226 ~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence 6678899999998 6777666555 677777666654444445555666666 5666 554443 57899999
Q ss_pred cCCCCCCCCCcCceeeeeeccc-CcCeEEEEecCCCEEEEeCCCCcEEEEeCC-CCcEEEEEecc-CCCeeEEEEEecCc
Q 014475 247 LNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILVVRRPL 323 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~~ 323 (424)
+.++... .....+..+ ...+..++++.+.++++...|+..+||.+. +++....+..+ .+.+..+.++|++.
T Consensus 302 ~~~~~~~------~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 302 PAKPARA------SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD 375 (695)
T ss_dssp TTBCSGG------GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred CCCCCcc------CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence 8765310 011122222 456778888767788888899988888655 46667777655 66788889999998
Q ss_pred eee----eccCCCceeeccCCCCC
Q 014475 324 YLN----LGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 324 ~l~----~~~~d~~i~iw~~~~~~ 343 (424)
.|+ +....+.|++|++.+++
T Consensus 376 ~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 376 DAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEcCCCCCCEEEEEECCCCc
Confidence 777 44556789999988765
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=5.4e-16 Score=152.50 Aligned_cols=246 Identities=9% Similarity=0.038 Sum_probs=166.9
Q ss_pred ceEEecceeecCCCccccCCCCce----eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc----------
Q 014475 38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------- 103 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g----~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---------- 103 (424)
.+..++ |+|||++|+.+..++| .|++||+.+++..........+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 466667 9999999997755423 899999999876543333334778999999999999887765
Q ss_pred ------EEEEEccCccee--e--eeccccCCeEEEEEccCCcEEEEeeC-----CCcEEEEeCCcccchhcccccccceE
Q 014475 104 ------IYMWEVASGRLL--K--KWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYL 168 (424)
Q Consensus 104 ------v~iwd~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~ 168 (424)
|++|++.++... . ....|...+..+.|+|||++|+.++. +..|.+||+.+..... ......
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~~~ 279 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI----TGILKW 279 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS----CSSCCC
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc----CCccce
Confidence 999999887532 2 22335566889999999999887765 5689999985410000 001122
Q ss_pred EeecCCcCceeEEEEEEcCceeEEEEEeCC----CcEEEEecCCCce--eeee-ecC--cceeEEEECCCCCEEEEEeCC
Q 014475 169 HSFTGHTLRITDIVIGYGGVSATIVSASED----RTCKVWSLLKGRL--LRNI-VFP--SVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~--~~~~-~~~--~~i~~~~~~~~~~~l~~~~~d 239 (424)
..+..+...+.. .|++++ ..|+..+.. +.|.+||+.++.. ...+ .+. ..+..++|++++.++++...+
T Consensus 280 ~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 334445555544 477877 455544432 3699999987642 2333 333 368889998888888888888
Q ss_pred Cc--EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEE-Ee---CCCCcEEEEeCCCCc
Q 014475 240 GS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI-SG---SEDGMVRVWDPITHN 301 (424)
Q Consensus 240 g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~-t~---~~dg~i~iwd~~~~~ 301 (424)
+. |++|++.++ .....+..+...+..+.++| ++.++ +. ...+.|..||+.+++
T Consensus 357 g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 85 556666444 33445556677888899998 65554 32 245789999998877
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=1.3e-15 Score=135.19 Aligned_cols=254 Identities=8% Similarity=-0.003 Sum_probs=181.0
Q ss_pred ceeEEEEECCCCceeeee-------cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEcc
Q 014475 60 SGSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE 132 (424)
Q Consensus 60 ~g~i~vwd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 132 (424)
++.|.++|.++++..... ........+.+. +++.+++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 389999999988764322 122456778875 45556666667899999999999988885 446789999998
Q ss_pred CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCc-----CceeEEEEEEcCceeEEEEEe-CCCcEEEEec
Q 014475 133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-----LRITDIVIGYGGVSATIVSAS-EDRTCKVWSL 206 (424)
Q Consensus 133 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~~-~d~~v~iwd~ 206 (424)
+++.+++...++.|.+||..++. ....+.... .....+++ .++ ..+++.. .++.|.++|+
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~t~~-----------~~~~i~~g~~~~~~~~p~~i~~-~~~--~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPKTYE-----------ITGYIECPDMDMESGSTEQMVQ-YGK--YVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETTTTE-----------EEEEEECTTCCTTTCBCCCEEE-ETT--EEEEEECTTCCEEEEEET
T ss_pred CCeEEEEECCCCeEEEEECCCCe-----------EEEEEEcCCccccCCCcceEEE-ECC--EEEEEcCCCCCEEEEEEC
Confidence 88655555478999999996632 222222111 24456777 343 4444444 4889999999
Q ss_pred CCCceeeeeecCcceeEEEECCCCCEEEEEeCC----------CcEEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEE
Q 014475 207 LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCL 275 (424)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 275 (424)
.+++....+........++++|+|++++++..+ +.|.++|..+. +....+... ......+
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEE
T ss_pred CCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeE
Confidence 999988888866677889999999877766554 78999999875 333333321 2468899
Q ss_pred EecC-CCEEEEeCCCCcEEEEeCCCCcEEEE--EeccCCCeeEEEEEe-cCceeeec----cCCCceeeccCC
Q 014475 276 AYST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPVNNILVVR-RPLYLNLG----SFSNPHTSSRRH 340 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~-~~~~l~~~----~~d~~i~iw~~~ 340 (424)
+++| ++.|+++.. .|.+||..+++.... +.........++++| ++...++. ..++.|.+|+..
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9999 888877765 899999998876421 221235678999999 45555665 678999999988
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=3.3e-17 Score=149.64 Aligned_cols=236 Identities=8% Similarity=-0.052 Sum_probs=157.3
Q ss_pred eeEEEECCCCCEEEEecCC---CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 83 IKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
+..++|+|||++|+..... ..|.+||+.+++.......+......+.|+|+++.|+.++.++.|++||+.++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~--- 114 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE--- 114 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE---
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc---
Confidence 6788999999998876442 4688899988876544443333333478999999999999999999999966321
Q ss_pred ccccccceEEeecCCcCceeE-------------------EEEEEcCceeEEEEE-----eCCCcEEEEecCCCceeeee
Q 014475 160 SQRASHLYLHSFTGHTLRITD-------------------IVIGYGGVSATIVSA-----SEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~~l~~~-----~~d~~v~iwd~~~~~~~~~~ 215 (424)
......+...... ..++|++ +.++.. ..+..|.+||+.+++.....
T Consensus 115 --------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 115 --------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp --------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred --------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 1111112111111 1234444 333322 35568999999988876666
Q ss_pred ecCcceeEEEECC-CCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeeccc--CcCeEEEEecC-CCEEEE
Q 014475 216 VFPSVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 216 ~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~-~~~l~t 285 (424)
.+...+..+.|+| ++..++..+.+ ..|.+||+.... ...+..+ ...+..++|+| ++.|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECCCCCEEEE
Confidence 6777889999999 78877766543 368888886542 1122222 23578899999 887776
Q ss_pred eCCC-----CcEEEEeCCCCcEEEEEeccCCCeeEEEEEe-cCceeeecc----------------CCCceeeccCCCCC
Q 014475 286 GSED-----GMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGS----------------FSNPHTSSRRHGSQ 343 (424)
Q Consensus 286 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~----------------~d~~i~iw~~~~~~ 343 (424)
++.+ +.|++||+.+++....... .+ .. +.|+| +|+++++++ .+..|++|++.+++
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 6543 4499999998875443322 22 33 89999 999888754 34679999988765
Q ss_pred C
Q 014475 344 L 344 (424)
Q Consensus 344 ~ 344 (424)
.
T Consensus 332 ~ 332 (396)
T 3c5m_A 332 A 332 (396)
T ss_dssp C
T ss_pred e
Confidence 4
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=4e-15 Score=140.56 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=193.2
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEcc--CcceeeeeccccCCe
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAV 125 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~i 125 (424)
+.+..+++... ++.|.++|..+++..........+..+.|+|||+++++++.++.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~-~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRD-AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETT-TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCC-CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 43344444444 499999999998887666666678899999999999999999999999995 777777776533 46
Q ss_pred EEEEEc----cCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecC----------C-cCceeEEEEEEcCce
Q 014475 126 TCLVFS----EDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------H-TLRITDIVIGYGGVS 189 (424)
Q Consensus 126 ~~~~~~----~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~~ 189 (424)
..++|+ |+|++++++.. ++.+.++|..+... +..+.. | ...+..+..++++.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-----------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~- 310 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRP- 310 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----------EEEEECCEECTTTCCEESCCCEEEEEECSSSS-
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-----------EEEEeccccccccccccCCCceEEEEEcCCCC-
Confidence 799999 69998877665 58999999866322 222111 2 22566777777654
Q ss_pred eEEEEEeCCCcEEEEecCCCcee--eeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
.+++....+|.|.++|....+.+ ..+........+.|+|++++++++. .++.|.++|+.+++ .+....
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---------l~~~i~ 381 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIED 381 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEE
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---------EEEEEe
Confidence 66777778899999998765432 3333455677889999999988766 57899999999863 222222
Q ss_pred -----ccCcCeEEEEecC--CCEEEEeC-CCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeeccC-
Q 014475 267 -----DHSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF- 330 (424)
Q Consensus 267 -----~~~~~i~~~~~~~--~~~l~t~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~- 330 (424)
.|.+.-..+ ++| +..++++. .++.|.++|..+ .+.++++......-..+..+|++++|.+...
T Consensus 382 vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 382 TGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred ccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCC
Confidence 243222222 466 34445553 568999999988 6788888865444355778999998877542
Q ss_pred ------CCceeeccCCCC
Q 014475 331 ------SNPHTSSRRHGS 342 (424)
Q Consensus 331 ------d~~i~iw~~~~~ 342 (424)
.+.|.++|+.+.
T Consensus 461 ~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CSSHHHHTCEEEEEGGGC
T ss_pred CCCcccCceEEEEECCcc
Confidence 458999998865
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=1e-15 Score=150.04 Aligned_cols=239 Identities=8% Similarity=-0.072 Sum_probs=161.8
Q ss_pred CceEEecceeecCCCccc-----cCCCCceeEEEEECCCCcee-eeecCCCCeeEEEECCCCCEEEEecCCCc-------
Q 014475 37 HGLACVGQRFLASSQLRE-----QPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGD------- 103 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~-----~~~~~~g~i~vwd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~------- 103 (424)
..+..++ |+|||++|| .++.+ ..|++||+.+++.. ...........++|+|||+.|+.++.+..
T Consensus 121 ~~~~~~~--~SPDG~~la~~~~~~G~~~-~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 121 VSLGTWA--VSWDGKKVAFAQKPNAADE-AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEEEEEE--ECTTSSEEEEEEEETTCSC-CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EEEEEEE--ECCCCCEEEEEECCCCCce-EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 4566777 999999999 44433 79999999988764 22222222378999999999999888765
Q ss_pred ------EEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCC----cEEEEeCCcccchhcccccccceEE
Q 014475 104 ------IYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 104 ------v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
|++|++.++. ++.....|...+..+.|+|||++|+.++.++ .|.+|+..++ . ..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---------~---~~ 265 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---------D---FR 265 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---------S---CE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---------c---eE
Confidence 9999998876 3333344556789999999999998877666 6777765321 1 22
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCce---eeeeec--CcceeEEEECCCCCEEEEEeCCCc
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRL---LRNIVF--PSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
.+..+...+....+ +++ .+++.+. .++.|.+||+.+++. ...+.+ ...+..++++ ++.++++...|+.
T Consensus 266 ~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred EeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 23334445555555 666 5333333 257899999987653 333332 4467888887 6778888889998
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeeccc-CcCeEEEEecC-CCEEE----EeCCCCcEEEEeCCCCcE
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLI----SGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~l~----t~~~dg~i~iwd~~~~~~ 302 (424)
.++|.++... .....+..+ ...+..+.++| ++.++ +....++|++||+.+++.
T Consensus 342 ~~l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 342 SEVRVATLKG--------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTC--------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEeCCC--------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888765321 223334433 56677788888 66666 333457899999998763
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=8.4e-16 Score=132.51 Aligned_cols=239 Identities=9% Similarity=-0.047 Sum_probs=167.6
Q ss_pred CeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
...++++++++++++ +...++.|.+||..++........+...+.+++++++++++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-----
Confidence 778999999999777 556788999999766543322223445678999999998666655 8899999985421
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCC
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (424)
...........+.++++.+++ ..+++...++.|.+|+..+........ ....+..++++|+++++++...+
T Consensus 99 ------~~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 99 ------QTVLPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp ------CEECCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred ------EeeeecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCC
Confidence 111111223567889998877 677776778899999866544332221 23467889999999977777778
Q ss_pred CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (424)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (424)
+.|.+||..... .......+...+..+++++ +.++++...++.|.+||............+...+.++++
T Consensus 171 ~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 171 NRVVKLEAESNN---------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp TEEEEECTTTCC---------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred CEEEEEecCCCc---------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence 899999987653 1111222336688999999 888888878899999998765443322223356899999
Q ss_pred EecCceeeeccCCCceeeccCCCCC
Q 014475 319 VRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 319 s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+++|+.+++...++.|++++....+
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9999988888999999999987544
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.73 E-value=4.4e-15 Score=127.94 Aligned_cols=246 Identities=14% Similarity=0.055 Sum_probs=175.1
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecCC--CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecccc-CCe
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAV 125 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i 125 (424)
.++.+++++.+ +.|.+||.++++........ ..+.++.++|+|+++++ .++.|..||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 35667777776 99999999899888776543 37899999999998884 4678999998 899988887653 468
Q ss_pred EEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEE
Q 014475 126 TCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW 204 (424)
Q Consensus 126 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iw 204 (424)
.++.+.++|+.+++.+. ++.+..+|... ......... .....+......+...+++ +++++...++.|..|
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~-----~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFE-----TGIERPHAQFRQINKNKKG--NYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEEC-----CSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEecc-----CCCCcccccccCceECCCC--CEEEEecCCCEEEEE
Confidence 89999999999999887 77788787622 110000000 0001222234455666666 899999999999999
Q ss_pred ecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc------CcCeEEEEec
Q 014475 205 SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH------SKAVTCLAYS 278 (424)
Q Consensus 205 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~ 278 (424)
|.. ++.+..+..+..+..+...++++.++++..+++|..+|..+++ .+-.+..+ -..+..++..
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---------~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR---------IVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------EEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------EEEEecCCCCCCccccccccceEc
Confidence 987 9999998877777788899999999999888899999998764 33333222 1236777777
Q ss_pred C-CCEEEEeC--CC------CcEEEEeC-CCCcEEEEEeccC--CCeeEE
Q 014475 279 T-GDLLISGS--ED------GMVRVWDP-ITHNIVRMFRLAK--GPVNNI 316 (424)
Q Consensus 279 ~-~~~l~t~~--~d------g~i~iwd~-~~~~~~~~~~~~~--~~v~~l 316 (424)
+ ++++++.. .. +..+++++ .+++.+.++..+. +.+..+
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 7 77777763 11 23345555 5788877776543 345544
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=5.4e-15 Score=129.31 Aligned_cols=232 Identities=12% Similarity=0.121 Sum_probs=163.0
Q ss_pred ceEEecceeecCCC-ccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee
Q 014475 38 GLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (424)
Q Consensus 38 ~v~~~~~~~~~~~~-~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 116 (424)
....+. |+|+++ +++++..+ +.|..|+..++ ......+...+.+++++|+|+++++...++.|.+||..+++...
T Consensus 29 ~~eg~~--~d~~g~~l~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 29 WTEGPV--YVPARSAVIFSDVRQ-NRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp SEEEEE--EEGGGTEEEEEEGGG-TEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred cccCCe--EeCCCCEEEEEeCCC-CEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 345566 999998 55555554 99999999887 54445567789999999999988887777899999998887544
Q ss_pred eecc----ccCCeEEEEEccCCcEEEE----ee-------------CCCcEEEEeCCcccchhcccccccceEEeecCCc
Q 014475 117 KWHA----HYRAVTCLVFSEDGSFLIS----GS-------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (424)
Q Consensus 117 ~~~~----~~~~i~~~~~~~~~~~l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (424)
.... ....+..++++|+|+++++ ++ ..+.|..++... ....+..+.
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-------------~~~~~~~~~ 171 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-------------TLSAPIRDR 171 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-------------CEEEEECCC
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-------------CEEEeecCC
Confidence 3322 1235678999999998887 33 123555555421 122334455
Q ss_pred CceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CCce---eeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL---LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 176 ~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
.....++|+|++ +.+++.+.++.|.+||+. +++. ...+. ....+..++++++|+++++. ++.|.+||.+.
T Consensus 172 ~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g- 246 (296)
T 3e5z_A 172 VKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG- 246 (296)
T ss_dssp SSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred CCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence 667889999998 667777788999999997 4544 22221 34456789999999866655 78899999864
Q ss_pred CCCCCCcCceeeeeecccCcCeEEEEe-cC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 251 SPSTSSYGMHIIGSLSDHSKAVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
+.+..+..+.. +++++| .| ++.|++++.++ +.-++.++.+.
T Consensus 247 ---------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 ---------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ---------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ---------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 34555666666 899999 46 77787777664 55556665543
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=4.1e-15 Score=128.20 Aligned_cols=238 Identities=8% Similarity=-0.012 Sum_probs=165.6
Q ss_pred ceEEecceeecCCCccc-cCCCCceeEEEEECCCCceeee-ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee
Q 014475 38 GLACVGQRFLASSQLRE-QPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~-~~~~~~g~i~vwd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 115 (424)
....++ +.++|++.+ +...+ +.|.+|+..+...... ......+.+++++++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~--~~~~g~l~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVA--VDSAGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEE--ECTTCCEEEEECSSS-CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceE--ECCCCCEEEEccCCC-CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 556667 899998666 43454 8999999766544322 22335788999999999776665 889999998665433
Q ss_pred eeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 116 ~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
.........+..+++.++++.+++...++.|.+|+..+. ............+.++++++++ +.+++.
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~p~~i~~~~~g--~l~v~~ 167 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK-----------TQTVLPFTGLNDPDGVAVDNSG--NVYVTD 167 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC-----------SCEECCCCSCCSCCCEEECTTC--CEEEEE
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc-----------eeEeeccccCCCceeEEEeCCC--CEEEEE
Confidence 222223367899999999998887777889999976431 1111112233457788998877 666776
Q ss_pred eCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE
Q 014475 196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (424)
Q Consensus 196 ~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 274 (424)
..++.|.+||........... ....+..++++++|.++++...++.|.+|+...... ......+...+.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLA 238 (270)
T ss_dssp GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEE
T ss_pred CCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCcee
Confidence 678899999987765443322 226688999999997777777788999999876421 1111223356899
Q ss_pred EEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 275 LAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 275 ~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
+++++ ++++++...++.|+++++...+
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999 8888888899999999987654
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=1.1e-14 Score=129.61 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=167.7
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-cCCCCeeEEEEC
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN 89 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-~~~~~v~~~~~s 89 (424)
.++.++.| .++....+..+. ..+..++ |++++++++++..+ +.|.+||.++++..... .+...+.+++++
T Consensus 25 ~~~~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 25 SESELQTI---TAEPWLEISKKG---LQLEGLN--FDRQGQLFLLDVFE-GNIFKINPETKEIKRPFVSHKANPAAIKIH 95 (333)
T ss_dssp CGGGSCEE---ECEEEEEEESSC---CCEEEEE--ECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred ecccCccc---ccceeEEEeccC---ccccCcE--ECCCCCEEEEECCC-CEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence 67888999 355666665443 3456666 99999977666665 89999999887765433 456789999999
Q ss_pred CCCCEEEEecCC----CcEEEEEccCcceeeeec--cccCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccch
Q 014475 90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEE 157 (424)
Q Consensus 90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~ 157 (424)
|+|+++++...+ +.|.+||.+++.....+. .+...+.++.++|+++++++... .+.|..+|..++.
T Consensus 96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-- 173 (333)
T 2dg1_A 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-- 173 (333)
T ss_dssp TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--
T ss_pred CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--
Confidence 999988877666 689999988776543332 24467899999999988776653 3556666653311
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEE-EEEeCCCcEEEEecCC-Cceeeee------ecC--cceeEEEEC
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK-GRLLRNI------VFP--SVIDAIALD 227 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d~~v~iwd~~~-~~~~~~~------~~~--~~i~~~~~~ 227 (424)
...+..+...+..++|++++ +.+ ++.+.++.|.+||+.+ +.....+ ... ..+..++++
T Consensus 174 ----------~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 174 ----------VTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp ----------EEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ----------EEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 11111223356788999987 544 4555678999999964 3322211 111 367889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccC------cCeEEEEecC-CCEEEEeCCCC
Q 014475 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------KAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~-~~~l~t~~~dg 290 (424)
++++++++...++.|.+||.+. +.+..+..+. ..+.+++|+| ++.|+.++.++
T Consensus 242 ~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 SDDNLYVAMYGQGRVLVFNKRG----------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTCCEEEEEETTTEEEEECTTS----------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEcCCCEEEEECCCC----------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 9999888777888999999843 2233333222 2688999998 66666555443
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.71 E-value=8.8e-16 Score=151.60 Aligned_cols=279 Identities=13% Similarity=0.010 Sum_probs=181.9
Q ss_pred eecCCCccccCCCCce--eEEEEEC--C---CCceeee-------ecCCCCeeEEEECCCCCEEEEecCC-----CcEEE
Q 014475 46 FLASSQLREQPSASSG--SILYWSW--S---KPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM 106 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g--~i~vwd~--~---~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~i 106 (424)
..|+|++++....+.+ .-.+|.. . .++.... ..+...+..++|||||++||.+..+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4588888876654433 3445543 3 3332221 1122368899999999999887543 35999
Q ss_pred EEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc--------------EEEEeCCcccchhcccccccceEEeec
Q 014475 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------------VRIWSLLTVFEECESQRASHLYLHSFT 172 (424)
Q Consensus 107 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~ 172 (424)
||+.+++.+... .+...+..++|+|| +.|+.++.++. |++|++.++.. ....+....
T Consensus 194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-------~~~lv~~~~ 264 (741)
T 1yr2_A 194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-------ADQPVFATP 264 (741)
T ss_dssp EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-------GCEEEECCT
T ss_pred EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-------hCEEEeccC
Confidence 999999875432 12222357899999 98888876654 88999865321 112233333
Q ss_pred CCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCC--ceeeeee-cCcceeEEEECCCCCEEEEEeCC----C
Q 014475 173 GHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRD----G 240 (424)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g 240 (424)
.+...+..+.|+|++ ++|+..+.++ .|.+||+.++ +....+. ......... +|+++.|+..+.+ +
T Consensus 265 ~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 265 ELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp TCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTC
T ss_pred CCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCC
Confidence 344457889999998 7777666443 7999999877 4133343 333444443 4889888887764 4
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCC-CCcEEEEEecc-CCCeeEEEE
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILV 318 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~ 318 (424)
.|.+||+.... . .....+..+...+..+.+..+.++++...|+..+||.+. +++....+..+ .+.+..+.+
T Consensus 342 ~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~ 414 (741)
T 1yr2_A 342 KIVRVDLSGST-P------RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG 414 (741)
T ss_dssp EEEEEECSSSS-C------EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC
T ss_pred EEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec
Confidence 59999987631 0 222233444555667777767778888889987777554 46667777653 567889999
Q ss_pred EecCceee----eccCCCceeeccCCCCC
Q 014475 319 VRRPLYLN----LGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 319 s~~~~~l~----~~~~d~~i~iw~~~~~~ 343 (424)
+|++..|+ +....+.++.||+.+++
T Consensus 415 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 415 RPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 99998776 44556789999987654
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=1.4e-14 Score=124.78 Aligned_cols=210 Identities=13% Similarity=0.106 Sum_probs=162.0
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEE
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
.+++|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|+.+++ .++.|..||. ++ ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G-----------~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DG-----------RELW 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TS-----------CEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CC-----------CEEE
Confidence 46789999999999999999999999998766 47899999999998883 4678999998 42 2334
Q ss_pred eecCC-cCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceeeeeecC-------cceeEEEECCCCCEEEEEeCCC
Q 014475 170 SFTGH-TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 170 ~~~~~-~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg 240 (424)
.+..+ ...+.++.+.+++ +.+++.+. ++.+..+|. +++.+..+... .....++..++|+++++...++
T Consensus 70 ~~~~~~~~~~~~~~~~~dG--~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDG--NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEECCTTCEEEEEEECTTS--CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEcCCCCccccccEECCCC--CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 44433 3467778888887 88888877 778888885 67777766522 2345667899999999999999
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC------Ce
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PV 313 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~------~v 313 (424)
.|..||.. + +.+..+..+ ..+.++...+ ++.+++++.++.|..+|..+|+.+.++..+.. .+
T Consensus 147 ~v~~~d~~-G---------~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 147 EVREIAPN-G---------QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp EEEEECTT-S---------CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred EEEEECCC-C---------CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 99999988 5 334444433 3455666777 88999998888999999999999999875431 26
Q ss_pred eEEEEEecCceeeec
Q 014475 314 NNILVVRRPLYLNLG 328 (424)
Q Consensus 314 ~~l~~s~~~~~l~~~ 328 (424)
..+...++|..+++.
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 788888999888776
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=1.6e-13 Score=123.32 Aligned_cols=273 Identities=9% Similarity=-0.117 Sum_probs=182.9
Q ss_pred eecCCCccccCCC-Cce---eEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475 46 FLASSQLREQPSA-SSG---SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS 111 (424)
Q Consensus 46 ~~~~~~~l~~~~~-~~g---~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~ 111 (424)
..|+++++.++.. ..+ .|.++|..+.+..........- .++++|||++++++. .++.|.+||..+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 4467766666543 213 8899999988765443333333 999999999999885 367899999998
Q ss_pred cceeeeeccc-------cCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEe-ecCCcCceeEE
Q 014475 112 GRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDI 181 (424)
Q Consensus 112 ~~~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 181 (424)
.+.+..+... ......+.|+|||++|+++.. ++.|.++| .++. .+.. +.. .. ++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----------~~~~~i~~-~~---~~ 170 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----------SDDQLLSS-PT---CY 170 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------EEeEEcCC-Cc---eE
Confidence 8877766432 133568999999999998874 47899999 7732 1222 221 11 24
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee------cCcc-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST 254 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (424)
.+.+.+. ..+++.+.||.+.++|. +++...... ...+ .....+.+++..++..+..+.+.+.|+.....
T Consensus 171 ~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-- 246 (373)
T 2mad_H 171 HIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-- 246 (373)
T ss_pred EEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc--
Confidence 4556654 46677788999999999 877663322 1111 12234556655555555788999999975431
Q ss_pred CCcCceeeeeec----------ccCcCeEEEEecC-CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccCCCe
Q 014475 255 SSYGMHIIGSLS----------DHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV 313 (424)
Q Consensus 255 ~~~~~~~~~~~~----------~~~~~i~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v 313 (424)
..+..+. ........+.++| ++.++.+.. ++.|.++|+.+++.+.++.. ....
T Consensus 247 -----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p 320 (373)
T 2mad_H 247 -----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDV 320 (373)
T ss_pred -----eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCc
Confidence 1111111 0122344577888 666655432 35799999999999999964 3467
Q ss_pred eEEEEEecCc-eeeecc-CCCceeeccCCCCCCC
Q 014475 314 NNILVVRRPL-YLNLGS-FSNPHTSSRRHGSQLP 345 (424)
Q Consensus 314 ~~l~~s~~~~-~l~~~~-~d~~i~iw~~~~~~~~ 345 (424)
..++|+|||+ .++++. .++.|.++|..+.+..
T Consensus 321 ~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 9999999999 677766 5899999999877653
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.69 E-value=3.1e-14 Score=126.36 Aligned_cols=280 Identities=10% Similarity=0.022 Sum_probs=189.8
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeec-C--
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P-- 79 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~-~-- 79 (424)
++.|.+.|..+++.+.++.....+ . +. ++|+|+.+.++.. +++.|.+||..+.+...... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P----~-va--~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g 130 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP----N-PV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 130 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC----E-EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCEEEEEECCCCeEEEEEECCCCC----c-EE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence 689999999999999999765443 2 55 9999999988762 23789999999988654432 1
Q ss_pred -----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCC
Q 014475 80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 -----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~ 152 (424)
......++|+|||++++++.. ++.|.++|+.+++.+.++.... . ...+....+.+++.+.||.+.+.++.
T Consensus 131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence 235678999999999888764 6889999999999988885322 1 22233345667788889999999986
Q ss_pred cccchhcccccccceEEeecCCcCcee-EEEEE-EcCceeEEEEEeCCCcEEEEecCCCc--eeeeee-----------c
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIG-YGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------F 217 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----------~ 217 (424)
+...... .. . ..+.....++. ...|. +++ ++++ .+.+|.|.+.|+.+.. ....+. .
T Consensus 208 ~~g~v~~-~~--~---~~~~~~~~~~~~~~~~~~~dG--~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 208 TEGTPEI-TH--T---EVFHPEDEFLINHPAYSQKAG--RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp SSSCCEE-EE--C---CCCSCTTSCBCSCCEEETTTT--EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCCeEEE-ee--c---ceeccccccccccceeEcCCC--cEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 5211100 00 0 01111112221 13444 343 4444 5668999999997654 333332 1
Q ss_pred CcceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEE
Q 014475 218 PSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS 285 (424)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t 285 (424)
+.....++++|+++.+++... .+.|.++|+.+. +.+..+.. ...+..+++++ ++ +|++
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------kv~~~i~v-g~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------ERLAKFEM-GHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------eEEEEEEC-CCCcceEEECCCCCeEEEE
Confidence 334556888999988888653 247999999887 34444432 23678999999 65 5555
Q ss_pred -eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 286 -GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 286 -~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
...++.|.++|..+++.++++... +.-..|.+++|
T Consensus 349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 456899999999999999999854 33456677766
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.68 E-value=3.8e-13 Score=117.60 Aligned_cols=271 Identities=7% Similarity=-0.012 Sum_probs=187.0
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 114 (424)
.....+. +.++|+..++...+ +.|.+||.. ++...... ....+..+++.++++++++...++.|..||.. ++.
T Consensus 20 ~~p~~i~--~d~~g~l~v~~~~~-~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 20 SGPYGIT--SSEDGKVWFTQHKA-NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCcceee--ECCCCCEEEEcCCC-CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4566777 88999877776655 899999988 54433222 23678999999999988877777889999987 554
Q ss_pred ee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEE
Q 014475 115 LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (424)
Q Consensus 115 ~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 193 (424)
.. .+......+.++++.++++++++...++.|..+|... . ............+..+++.+++ +..+
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~----------~~~~~~~~~~~~~~~i~~d~~g--~l~v 161 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-T----------IYEYDLPNKGSYPAFITLGSDN--ALWF 161 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-C----------EEEEECSSTTCCEEEEEECTTS--SEEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-C----------EEEccCCCCCCCceeEEECCCC--CEEE
Confidence 32 2222346789999999998888777678899998742 1 1111122234567888888877 6666
Q ss_pred EEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc
Q 014475 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (424)
Q Consensus 194 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (424)
+...++.|..+|. +++... +. ....+..+++++++.++++....+.|.+|+.. +. ........+..
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~ 230 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--------ISEYDIPTPNA 230 (300)
T ss_dssp EETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--------EEEEECSSTTC
T ss_pred EecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--------EEEEECCCCCC
Confidence 6666788999998 555443 32 23468899999999877766667789999983 21 11112233456
Q ss_pred CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE-EeccCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
.+.++++++ ++++++...++.|..||. +++.... +......+.+++++++|...++.. . .|..++.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 788999998 787777777889999998 4544322 222345788999999998766655 4 5555543
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.67 E-value=1.1e-13 Score=121.94 Aligned_cols=246 Identities=9% Similarity=0.057 Sum_probs=168.1
Q ss_pred CCCeeEEEECCCCCEEEE-------ecCCCcEEEEEccCcceeeeec----cccCCeEEEEEccC-CcEEEEeeCCCcEE
Q 014475 80 AEPIKPIAANSHGTYIAG-------GGQSGDIYMWEVASGRLLKKWH----AHYRAVTCLVFSED-GSFLISGSEDGCVR 147 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~-------~~~dg~v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~s~~~dg~i~ 147 (424)
-....+++|++++.++++ +..++.|.+||..+++...... ++...+.++.++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345689999999988888 6778899999988776543222 25567999999998 76555544 44788
Q ss_pred EEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeCC---------------CcEEEEecCCCce
Q 014475 148 IWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED---------------RTCKVWSLLKGRL 211 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~d---------------~~v~iwd~~~~~~ 211 (424)
+||.. +..... ...... .....+.++++.+++ ++.++...+ +.|..||.. ++.
T Consensus 96 ~~d~~-g~~~~~-------~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 96 VVQTD-GTFEEI-------AKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEETT-SCEEEC-------CSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred EEeCC-CCEEEE-------EeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 99985 211000 000001 122457889998887 666665544 567777765 554
Q ss_pred eeeeecCcceeEEEEC----CCCCEEEEE-eCCCcEEEEEcC-CCCCCCCCcCceeeeeecccC-cCeEEEEecC-CCEE
Q 014475 212 LRNIVFPSVIDAIALD----PAEHVFYAG-SRDGSIYIAALN-AESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLL 283 (424)
Q Consensus 212 ~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~~l 283 (424)
............++++ |+++.++++ ..++.|.+||.. .+... .......+..+. ..+..+++++ ++++
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCCCCCCCCceEECCCCCEE
Confidence 4433444556889999 999766655 467899999986 22100 001222333343 5678899999 8888
Q ss_pred EEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eeccCCCceeeccCCC
Q 014475 284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHG 341 (424)
Q Consensus 284 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~d~~i~iw~~~~ 341 (424)
++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 887778899999998888888887777889999999999855 5555678898888764
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=1.1e-12 Score=117.87 Aligned_cols=262 Identities=9% Similarity=-0.090 Sum_probs=175.5
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecC-----
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP----- 79 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~----- 79 (424)
+|.++|..+++.+.++.....+ .+. ++|||+.+.++.. .++.|.+||..+.+.......
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-----~i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-----NPV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-----CeE--ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 8999999999998888654321 344 9999999998852 237899999987665433211
Q ss_pred ---CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeee-eccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeCC
Q 014475 80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 ---~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 152 (424)
......++|+|||++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.++|.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 134568999999999998864 47899999 99988877 6432 2 24455544 45667778999999999
Q ss_pred cccchhcccccccceEEeecCCcCce-eEEEEEEcCceeEEEEEeCCCcEEEEecCCCc--eeeeee-----------cC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------FP 218 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~-----------~~ 218 (424)
++........ . ..+ ....++ ....+.+++ ..++..+.++.+.+.|+.... .+..+. .+
T Consensus 195 ~g~~~~~~~~---~--~~~-~~~~p~~~~~~~~~~~--~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p 266 (373)
T 2mad_H 195 AGGAAGAGLV---G--AML-TAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP 266 (373)
T ss_pred CCcEEEEEec---c--ccc-cCCcceeecceeEecC--CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence 6432100000 0 001 111121 223455555 333333467889999986543 222222 12
Q ss_pred cceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEe
Q 014475 219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG 286 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~ 286 (424)
.....+.++|+++.+++... .+.|.++|..+. +.+..+. -......++|+| ++ .++++
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEE-CCCCcCeEEECCCCCeEEEEE
Confidence 33455789999998888654 357999999886 4455553 233578999999 77 77777
Q ss_pred C-CCCcEEEEeCCCCcEEEEE
Q 014475 287 S-EDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 287 ~-~dg~i~iwd~~~~~~~~~~ 306 (424)
. .++.|.++|+.+++.+.++
T Consensus 337 ~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCCCeEEEEECCCCCEEeee
Confidence 6 5899999999999999884
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=1.2e-12 Score=114.21 Aligned_cols=257 Identities=10% Similarity=0.049 Sum_probs=174.2
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--cCCCCeeEEEE
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAA 88 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--~~~~~v~~~~~ 88 (424)
.++.|.+||.. ++.. .+... .....+..++ +.++|...++...+ +.|..|+.+. +..... .....+..+++
T Consensus 34 ~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~--~~~~g~l~v~~~~~-~~i~~~~~~g-~~~~~~~~~~~~~~~~i~~ 106 (299)
T 2z2n_A 34 KANMISCINLD-GKIT-EYPLP-TPDAKVMCLT--ISSDGEVWFTENAA-NKIGRITKKG-IIKEYTLPNPDSAPYGITE 106 (299)
T ss_dssp TTTEEEEECTT-CCEE-EEECS-STTCCEEEEE--ECTTSCEEEEETTT-TEEEEECTTS-CEEEEECSSTTCCEEEEEE
T ss_pred CCCcEEEEcCC-CCeE-EecCC-cccCceeeEE--ECCCCCEEEeCCCC-CeEEEECCCC-cEEEEeCCCcCCCceeeEE
Confidence 47889999988 5543 33221 1235577777 88999887776655 8899999863 332222 23557899999
Q ss_pred CCCCCEEEEecCCCcEEEEEccCcceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccce
Q 014475 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 89 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
.|+++++++...++.|..||. +++.... ...+...+..+++.++++.+++...++.|..||. ++. ..
T Consensus 107 ~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------~~- 174 (299)
T 2z2n_A 107 GPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---------IT- 174 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---------EE-
T ss_pred CCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---------EE-
Confidence 999998888777889999998 5544322 2334567899999999988877777789999998 321 11
Q ss_pred EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
..........+.++++.+++ ...++...++.|..||. +++... +. ....+..++++++++++++...++.|..
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDD--ALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp EEECSSTTCCEEEEEECTTS--SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred EeeCCCCCCcceeEEECCCC--CEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 11122344567788888876 66666666789999998 665433 32 2367889999999986666657789999
Q ss_pred EEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc
Q 014475 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (424)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~ 301 (424)
||... . ........+...+.++++ + +.++++.. .+.|..++.++++
T Consensus 251 ~d~~g-~--------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 251 LTSNN-I--------IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EETTT-E--------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ECCCC-c--------eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 99832 1 111122344567899999 8 77666655 5667777776543
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=8.4e-14 Score=123.57 Aligned_cols=274 Identities=11% Similarity=-0.006 Sum_probs=184.4
Q ss_pred eecCCCccccCCCC----ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccC
Q 014475 46 FLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS 111 (424)
Q Consensus 46 ~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~ 111 (424)
..|+++.+.++... ++.|.+.|..+.+............ ++++|||++++++. .++.|.+||..+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 56888887777552 4899999999988765443333334 99999999888775 357899999999
Q ss_pred cceeeeecccc-------CCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 112 GRLLKKWHAHY-------RAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 112 ~~~~~~~~~~~-------~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
++.+..+.... .....+.|+|||++++++.. ++.|.++|+.+. ..+.++.... +..
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-----------~vv~tI~v~g----~~~ 183 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-----------AFKRMLDVPD----CYH 183 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCS----EEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-----------cEEEEEECCC----cce
Confidence 99888775321 24667999999999888764 688999999663 2333332211 112
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCC-Cceeeeee-c----Ccce-eEEEE-CCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-F----PSVI-DAIAL-DPAEHVFYAGSRDGSIYIAALNAESPST 254 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~-~----~~~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (424)
+.|.+. ..+++.+.||.+.+.++.+ ++...... . ..++ ....| .++|++++ .+.+|.+++.|.......
T Consensus 184 ~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~- 260 (386)
T 3sjl_D 184 IFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK- 260 (386)
T ss_dssp EEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE-
T ss_pred eecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce-
Confidence 234332 5677888899999999876 55432111 1 1112 12355 35776555 556899999999775421
Q ss_pred CCcCceeeeeec----------ccCcCeEEEEecC-CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccCCCe
Q 014475 255 SSYGMHIIGSLS----------DHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV 313 (424)
Q Consensus 255 ~~~~~~~~~~~~----------~~~~~i~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v 313 (424)
....+. -.......+++++ ++.++.... .+.|.+.|+.+++.+.++... .++
T Consensus 261 ------v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~ 333 (386)
T 3sjl_D 261 ------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI 333 (386)
T ss_dssp ------ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred ------eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence 111111 0123344567788 665555431 257999999999999998753 478
Q ss_pred eEEEEEecCc-eeee-ccCCCceeeccCCCCCCC
Q 014475 314 NNILVVRRPL-YLNL-GSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 314 ~~l~~s~~~~-~l~~-~~~d~~i~iw~~~~~~~~ 345 (424)
.++++++|++ +|.+ ...++.|.++|..+.+..
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 8999999997 5555 456899999999877653
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=8.6e-14 Score=137.39 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=157.2
Q ss_pred ceEEecceeecCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc----------
Q 014475 38 GLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------- 103 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---------- 103 (424)
.+..+. |+|||++++.+..++ ..|++||+.+++......+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 456666 999999999875432 4699999999886543323223468899999 98888876554
Q ss_pred ----EEEEEccCcce--eeee--ccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEe
Q 014475 104 ----IYMWEVASGRL--LKKW--HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 104 ----v~iwd~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
|++|++.++.. ...+ ..+...+..+.|+|||++|+..+.++ .|.+||+.++. ......
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~---------~~~~~~ 311 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK---------IGPVTA 311 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE---------ECCCEE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC---------CcccEE
Confidence 89999877652 2222 33334588999999999988877554 79999985521 010223
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeC----CCcEEEEecCCC--ceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEE
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (424)
+..+...+... +.+++ +.|+..+. ++.|.+||+.++ +....+. +...+..++++ ++.++++...++..+
T Consensus 312 l~~~~~~~~~~-~~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 312 LIPDLKAQWDF-VDGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred ecCCCCceEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 33344444444 34776 56666554 345999999875 2333333 33456677776 666778888888877
Q ss_pred EEEcCCCCCCCCCcCceeeeeecc-cCcCeEEEEecC-CCEEE-E---eCCCCcEEEEeCCCCc
Q 014475 244 IAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLI-S---GSEDGMVRVWDPITHN 301 (424)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~l~-t---~~~dg~i~iwd~~~~~ 301 (424)
+|.++... .....+.. +...+..+.++| ++.++ + ....++|++||+.+++
T Consensus 388 l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDG--------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTS--------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCC--------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77665221 22333433 356788899998 66555 2 2345789999998876
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.62 E-value=1.1e-13 Score=124.96 Aligned_cols=279 Identities=11% Similarity=-0.018 Sum_probs=185.8
Q ss_pred cCCCccccCCCCc----eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcc
Q 014475 48 ASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGR 113 (424)
Q Consensus 48 ~~~~~l~~~~~~~----g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~ 113 (424)
++++.+.++...+ +.|.+.|..+.+..........- .+.++||+++++++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4555555554433 79999999998877554433333 899999999888875 36789999999999
Q ss_pred eeeeeccc-------cCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEE
Q 014475 114 LLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (424)
Q Consensus 114 ~~~~~~~~-------~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (424)
.+..+.-. ......+.|+||+++++++.. ++.|.+.|+.+. ..+..+.... +....
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-----------kvv~~I~v~g----~~~~~ 225 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-----------TFDRMLDVPD----CYHIF 225 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCS----EEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-----------eEEEEEEcCC----ceeec
Confidence 88877532 234567899999999998864 578999999662 2333333211 12344
Q ss_pred EcCceeEEEEEeCCCcEEEEecCCCceeee----eec-Ccc-eeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVF-PSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 185 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~-~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
|.+. ..+++.+.||.+.+.+..+++.... +.. ..+ ...+.+.+++..++..+..+.+.+.|.......... .
T Consensus 226 p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-~ 303 (426)
T 3c75_H 226 PASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-P 303 (426)
T ss_dssp EEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC-C
T ss_pred cCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee-e
Confidence 4443 5667777889988888866655422 111 111 123567888888888888899999999764311000 0
Q ss_pred ceeee--e--ecccCcCeEEEEecC-CCEEEEeC----------CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCc
Q 014475 259 MHIIG--S--LSDHSKAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL 323 (424)
Q Consensus 259 ~~~~~--~--~~~~~~~i~~~~~~~-~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~ 323 (424)
+.... . ..........++++| ++.+++.. .++.|.+.|+.+.+.+.++... .....+.|+||++
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~ 382 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE 382 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence 00000 0 000111222367888 66555542 1357999999999999999753 3578999999999
Q ss_pred -eeeecc-CCCceeeccCCCCCCC
Q 014475 324 -YLNLGS-FSNPHTSSRRHGSQLP 345 (424)
Q Consensus 324 -~l~~~~-~d~~i~iw~~~~~~~~ 345 (424)
+++++. .++.|.++|..+.+..
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEEcCCCCeEEEEECCCCCEE
Confidence 777776 5999999999977643
No 206
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.61 E-value=2.8e-12 Score=116.08 Aligned_cols=308 Identities=9% Similarity=0.033 Sum_probs=187.6
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCC------CCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~ 77 (424)
.|+.++ .++.|..+|.++|+.+-+....... ...+... ...++..+.+++.+ +.|..+|..+++.....
T Consensus 55 ~v~~~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 55 VVYAAD-RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG---VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQT 129 (376)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE---EEEETTEEEEEETT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCeEEEEEccCCceeeeecCccccccccccCcccccC---ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEE
Confidence 355666 6899999999999988766543210 1222221 22344556666665 89999999998887665
Q ss_pred cCCCCeeE-EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe-----EEEEEccCCcEEEEeeCCCcEEEEeC
Q 014475 78 LPAEPIKP-IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSL 151 (424)
Q Consensus 78 ~~~~~v~~-~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~s~~~dg~i~iwd~ 151 (424)
.....+.+ ... .+..+++++.++.|..+|.++|+.+.......... ...... +..++.++.++.+..+|.
T Consensus 130 ~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 130 KVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp ECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred eCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 44333221 112 24467778889999999999998887765432211 112222 446778888999999999
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
.++................+... ..+.......+ ..++.++.++.+..+|.++++.+....... ...+.. ++.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~-~~~~~~p~~~~---~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~ 278 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRL-SDVDTTPVVVN---GVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGN 278 (376)
T ss_dssp TTCCEEEEEECCC------------CCCCCCEEET---TEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETT
T ss_pred CCCcEEEEEecccCCCCcccccc-cccCCCcEEEC---CEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECC
Confidence 77543211110000000000000 00101011112 567777889999999999999887665333 333333 467
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (424)
.+++++.++.+..+|..+++. .-... .....+...... +..|+.++.+|.|..+|..+++.+.......
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~ 348 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS 348 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred EEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 788888999999999988742 22221 111122222222 6788889999999999999999998887644
Q ss_pred CCeeEEEEEecCceeeeccCCCceeecc
Q 014475 311 GPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 311 ~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
..+....... +..|..++.+|.+..|+
T Consensus 349 ~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 4443322223 45677788899998876
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.60 E-value=5.2e-13 Score=120.68 Aligned_cols=264 Identities=9% Similarity=-0.039 Sum_probs=179.1
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC---------CceeEEEEECCCCceeeeecC----
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP---- 79 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------~~g~i~vwd~~~~~~~~~~~~---- 79 (424)
+.|.+.|..+++.+.++.....+ . +. ++|+++.+.++.. .++.|.++|..+.+.......
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--g---ia--~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--H---PV--AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--E---EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--c---eE--ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 79999999999999999865433 3 44 9999999988863 248999999998876543321
Q ss_pred ----CCCeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEEEeeCCCcEEEEeCC
Q 014475 80 ----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL 152 (424)
Q Consensus 80 ----~~~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 152 (424)
......+.|+|||++++++.. ++.|.+.|+.+++.+..+..... ....|+ ...+++.+.||.+.+.+..
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECC
Confidence 234678999999999998764 57899999999998888764221 223333 2556667778888888873
Q ss_pred cccchhcccccccceEEeecCCcCce-eEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee--eeee-----------cC
Q 014475 153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-----------FP 218 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-----------~~ 218 (424)
++...... . ..+.....++ ..+.+.+++ ..++..+..+.+.+.|....... ..+. .+
T Consensus 248 ~~~v~~~~---~----~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 248 DGETKVTN---T----EVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp TTCCEEEE---C----CCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCcEEEEe---e----eeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 32111000 0 0111111111 123456666 55555567889999998654421 1111 12
Q ss_pred cceeEEEECCCCCEEEEEeC----------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEe
Q 014475 219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG 286 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~ 286 (424)
.....++++|+++.+++... .+.|.++|..+. +.+..+... .....+.|+| ++ ++++.
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------kvv~~I~vg-~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------ERINKIELG-HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------CEEEEEEEE-EEECEEEECCSSSCEEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------eEEEEEECC-CCcCeEEEccCCCEEEEEE
Confidence 22334789999888877653 347999999986 445555422 2578899999 77 77777
Q ss_pred C-CCCcEEEEeCCCCcEEEEE
Q 014475 287 S-EDGMVRVWDPITHNIVRMF 306 (424)
Q Consensus 287 ~-~dg~i~iwd~~~~~~~~~~ 306 (424)
. .++.|.++|+.+++.++++
T Consensus 389 n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEe
Confidence 6 5999999999999999997
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.60 E-value=1.6e-12 Score=113.59 Aligned_cols=231 Identities=10% Similarity=0.113 Sum_probs=155.3
Q ss_pred CCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 81 EPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 81 ~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
.-..+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~---- 84 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS---- 84 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE----
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc----
Confidence 34567889985 55666767788999999987764 2332 4567999999999995554 4 5679999986532
Q ss_pred ccccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeCC---------CcEEEEecCC-CceeeeeecCcceeEEEEC
Q 014475 160 SQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLK-GRLLRNIVFPSVIDAIALD 227 (424)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~ 227 (424)
...+.... .....++++++++++ ++.++.... ..-.+|.+.. ++...........+.++|+
T Consensus 85 -----~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 85 -----AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS 157 (297)
T ss_dssp -----EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC
T ss_pred -----EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc
Confidence 11111111 123457889998887 655544221 2234554432 3433333344567899999
Q ss_pred CCCCEEEE-EeCCCcEEEEEcC--CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEE
Q 014475 228 PAEHVFYA-GSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (424)
Q Consensus 228 ~~~~~l~~-~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~ 303 (424)
|+++.+++ .+.++.|..|+++ ++... ..+....+..+...+..+++++ +++.++...++.|..||..+++.+
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 99987755 4567889999985 32210 0122233334456678899999 887777777888999999999999
Q ss_pred EEEeccCCCeeEEEEE-ecCceeeeccC
Q 014475 304 RMFRLAKGPVNNILVV-RRPLYLNLGSF 330 (424)
Q Consensus 304 ~~~~~~~~~v~~l~~s-~~~~~l~~~~~ 330 (424)
..+..+...+++++|. |+++.|..++.
T Consensus 234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9998887889999999 88887755443
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.60 E-value=9.7e-13 Score=119.97 Aligned_cols=235 Identities=9% Similarity=0.020 Sum_probs=161.9
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchh
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC 158 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~ 158 (424)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 4678999999999888877788999999987766555443322 33 99999999988888766 788888744211
Q ss_pred cccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee----eecCcce---eEEEECCC-
Q 014475 159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVFPSVI---DAIALDPA- 229 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~----~~~~~~i---~~~~~~~~- 229 (424)
...+..... ....+.+++++|+. ..|+.+..++.|..||..++..... ....... ..++++|+
T Consensus 207 ------~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 ------PTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp ------EEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred ------eEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 001111112 44567888998844 3455577788999999987753322 1111111 39999995
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc---------------CcCeEEEEecC-CCEEEEeC-CCCcE
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGS-EDGMV 292 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~l~t~~-~dg~i 292 (424)
+.++++-..++.|+.|+.+... ..+.++ -.....+++++ ++++++-. .++.|
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~~-----------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGEC-----------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCCE-----------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred CEEEEEeCCCCEEEEEecCCCE-----------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 5555555667889999876531 111111 24578999999 88888888 89999
Q ss_pred EEEeCCCCcEEEEEecc---------------CCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 293 RVWDPITHNIVRMFRLA---------------KGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 293 ~iwd~~~~~~~~~~~~~---------------~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
+.|++.++. +.++.++ -.....+++++++.++++-..++.|+.+++
T Consensus 348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999987776 4444444 235789999999988888888888876654
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.60 E-value=9.9e-13 Score=115.84 Aligned_cols=233 Identities=9% Similarity=0.070 Sum_probs=157.2
Q ss_pred ceEEecceeecCCCcccc-------CCCCceeEEEEECCCCceeeeec-----CCCCeeEEEECCC-CCEEEEecCCCcE
Q 014475 38 GLACVGQRFLASSQLREQ-------PSASSGSILYWSWSKPQVEVKSL-----PAEPIKPIAANSH-GTYIAGGGQSGDI 104 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~-------~~~~~g~i~vwd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~~dg~v 104 (424)
....++ |.++++++++ ...+ +.|.+||..+++...... +...+.+++++++ ++++++.. .+.|
T Consensus 19 ~~~~~~--~~~~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 19 GAEGPV--FDKNGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp TCEEEE--ECTTSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred CccCce--ECCCCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 345566 8899987777 4555 899999987776543332 3467899999999 77565554 3479
Q ss_pred EEEEccCcceeee-ecc----ccCCeEEEEEccCCcEEEEeeCC---------------CcEEEEeCCcccchhcccccc
Q 014475 105 YMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSED---------------GCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 105 ~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~ 164 (424)
.+||.+ ++.... ... ....+.+++++++++++++...+ +.|..||...
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----------- 162 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----------- 162 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-----------
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC-----------
Confidence 999987 665433 221 22458899999999888776655 4677776531
Q ss_pred cceEEeecCCcCceeEEEEE----EcCceeEEEEE-eCCCcEEEEecC-CCce-----eeeee-cC-cceeEEEECCCCC
Q 014475 165 HLYLHSFTGHTLRITDIVIG----YGGVSATIVSA-SEDRTCKVWSLL-KGRL-----LRNIV-FP-SVIDAIALDPAEH 231 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~-~~d~~v~iwd~~-~~~~-----~~~~~-~~-~~i~~~~~~~~~~ 231 (424)
. ...+..+......++++ +++ +.++.+ ..++.|.+||+. +++. ...+. +. ..+..++++++|+
T Consensus 163 -~-~~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 163 -Q-MIQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -C-EEEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -C-EEEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 1 11111223345778888 776 555444 567899999986 4432 11121 11 5678899999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCC
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~ 299 (424)
++++...++.|.+||.+++. ....+..+...+.+++++| ++ ++++...++.|..|++..
T Consensus 239 l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88887788999999987542 2333444557889999988 77 555666678899999764
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=8e-12 Score=109.10 Aligned_cols=236 Identities=12% Similarity=0.041 Sum_probs=167.9
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
...+.++++.++|++.++...++.|.+||.. ++... .+..+...+..+++.++++.+++...++.|..+|... .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g-~--- 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG-G--- 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C---
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCC-C---
Confidence 4578999999999988887778899999987 55433 2233346789999999998877776678899999752 1
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeee-ee-cCcceeEEEECCCCCEEEEE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~ 236 (424)
............+.++++.+++ .+.++...++.|..+|.. ++.... +. ....+..++++++++++++.
T Consensus 94 -------~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 94 -------FTEYPLPQPDSGPYGITEGLNG--DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp -------EEEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred -------eEEecCCCCCCCCccceECCCC--CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 1111222234567888888776 677766668899999987 554422 12 24568899999999966666
Q ss_pred eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEE-EeccCCCee
Q 014475 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN 314 (424)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~ 314 (424)
..++.|..+|. .+. ........+...+..+++.+ +.++++....+.|.+||. +++.... +..+...+.
T Consensus 164 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 233 (300)
T 2qc5_A 164 NQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPH 233 (300)
T ss_dssp TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred cCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCce
Confidence 66788999988 332 11112223445788999998 877777777788999998 5554433 223445788
Q ss_pred EEEEEecCceeeeccCCCceeeccCC
Q 014475 315 NILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 315 ~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+++++++|+..++...++.|..++..
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEECCCCCEEEeccCCCeEEEECCC
Confidence 99999999877777677889999874
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.56 E-value=6.9e-12 Score=121.96 Aligned_cols=298 Identities=13% Similarity=0.077 Sum_probs=186.5
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCC------ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH------GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~ 77 (424)
.|+.++ .++.|.-+|.++|+.+-++........ ....-. ....+..+++++.+ +.|..+|..+++.....
T Consensus 72 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~v~~~d-g~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTG-PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG--VAVWKGKVYVGVLD-GRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEEC-GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCc--cEEECCEEEEEccC-CEEEEEECCCCCEeeee
Confidence 355566 689999999999999987754322100 000011 22345566677666 99999999999887665
Q ss_pred cCC---CCeeEEEECC---CCCEEEEec------CCCcEEEEEccCcceeeeeccc------------------------
Q 014475 78 LPA---EPIKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKWHAH------------------------ 121 (424)
Q Consensus 78 ~~~---~~v~~~~~s~---~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~------------------------ 121 (424)
... .....+..+| ++. ++++. .+|.|+.||.++|+.+..+...
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 432 1111222233 444 44443 3689999999999987765421
Q ss_pred -------cCCeEEEEEccCCcEEEEeeCCCc-------------------EEEEeCCcccchhcccccccceEEeecCCc
Q 014475 122 -------YRAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (424)
Q Consensus 122 -------~~~i~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (424)
......+.+.|+...++.++.++. |..+|.+++... .......|.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~---------W~~~~~~~d 297 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV---------WHYQTTPGD 297 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE---------EEEESSTTC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee---------EeeecCCcc
Confidence 011125788888888888887764 899999875422 111111121
Q ss_pred -------CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc----------------------------
Q 014475 176 -------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS---------------------------- 219 (424)
Q Consensus 176 -------~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------------------------- 219 (424)
.+........++. ...++.++.+|.++++|.++++++.......
T Consensus 298 ~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~ 377 (689)
T 1yiq_A 298 AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGK 377 (689)
T ss_dssp CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCC
Confidence 1111122223441 1378899999999999999999875443111
Q ss_pred ------------ceeEEEECCCCCEEEEEeC---------------------------------------------CCcE
Q 014475 220 ------------VIDAIALDPAEHVFYAGSR---------------------------------------------DGSI 242 (424)
Q Consensus 220 ------------~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i 242 (424)
.-..++++|+..++++... +|.|
T Consensus 378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l 457 (689)
T 1yiq_A 378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL 457 (689)
T ss_dssp CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence 0012678888888887643 2668
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEe
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVR 320 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~ 320 (424)
+.||+.+++ .+-....+ .+...-.+.. +.+++.|+.||.|+.||.++|+.+.+++...+. ..-+.|..
T Consensus 458 ~A~D~~tG~---------~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~ 527 (689)
T 1yiq_A 458 IAWDPVKQQ---------AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSV 527 (689)
T ss_dssp EEEETTTTE---------EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred EEEECCCCC---------eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEE
Confidence 888888763 23333322 2222223444 889999999999999999999999999865432 24567788
Q ss_pred cCcee
Q 014475 321 RPLYL 325 (424)
Q Consensus 321 ~~~~l 325 (424)
+|+..
T Consensus 528 ~G~qy 532 (689)
T 1yiq_A 528 DGEQY 532 (689)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 88644
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=9e-12 Score=113.57 Aligned_cols=236 Identities=8% Similarity=0.032 Sum_probs=160.1
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC--cEEEEEccCcce
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRL 114 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~ 114 (424)
.....++ ++++++++++...+ +.|++||.+++............. ++|+|+++.|+++..++ .|.+++...+..
T Consensus 131 ~~P~~la--~d~~g~lyv~d~~~-~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIA--AVGNNTVLAYQRDD-PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEE--ECSTTEEEEEETTT-TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEE--EeCCCCEEEEecCC-CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 3456777 99999977666655 899999998877654443333344 99999999988887766 799998876654
Q ss_pred eeee----ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe--ecCCcCce--eEEEEEEc
Q 014475 115 LKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRI--TDIVIGYG 186 (424)
Q Consensus 115 ~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~~~~~~~ 186 (424)
...+ ......+.+++++|++..|+.+..++.|+.||..+... ..... ..++...- ..++++|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---------~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---------TLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---------EEEEECCCCSCCCCSSCCEEEEETT
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---------EEEecccccCCCCCCccccEEEeCC
Confidence 4343 22456778999999544555577788999999865321 11100 11122222 38999995
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeeecC---------------cceeEEEECCCCCEEEEEe-CCCcEEEEEcCCC
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------------SVIDAIALDPAEHVFYAGS-RDGSIYIAALNAE 250 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 250 (424)
+. .++++-...+.|+.|+.... ........ .....++++|+++++++-. .++.|+.|++.++
T Consensus 278 ~g-~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 278 DS-NFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TT-EEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CC-EEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 32 67777777889999997643 22222121 3478999999999777777 7889999997654
Q ss_pred CCCCCCcCceeeeeeccc---------------CcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 251 SPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
. +..+.++ -.....+++++ +.++++-..++.|+.+++
T Consensus 356 ~----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 Y----------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp E----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred E----------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2 2222222 24578899999 878888888888887765
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.55 E-value=3.4e-12 Score=111.98 Aligned_cols=235 Identities=12% Similarity=0.037 Sum_probs=157.4
Q ss_pred ecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 77 SLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
...........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+... .
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~ 117 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-Q 117 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-C
Confidence 33445677899999998 6677777889999997 454 345555667899999999999766655667899998742 1
Q ss_pred chhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEE----EeC-------------CCcEEEEecCCCceeeeeec
Q 014475 156 EECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----ASE-------------DRTCKVWSLLKGRLLRNIVF 217 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~ 217 (424)
. ........+ ....+.++++.+++ .+.++ |.. .+.|..+|..+++..... .
T Consensus 118 ~--------~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 118 A--------HLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp E--------EEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred E--------EEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 0 001111111 12346788998887 66665 332 256888887767654443 4
Q ss_pred CcceeEEEECCCCCEEEEEeCC------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCC
Q 014475 218 PSVIDAIALDPAEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (424)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg 290 (424)
....+.++|+|+++.|+++... +.|+.|++..... . ...... ......+..+++++ ++ |.++..+|
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~---~~~~~~--~~~~~~pdgi~~d~~G~-lwv~~~~g 259 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-H---DRRHFA--SVPDGLPDGFCVDRGGW-LWSSSGTG 259 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-E---EEEEEE--CCSSSCCCSEEECTTSC-EEECCSSE
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-c---CCeEEE--ECCCCCCCeEEECCCCC-EEEecCCc
Confidence 4456789999999988887665 6899999875420 0 001111 11234456788888 77 44444454
Q ss_pred cEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCcee
Q 014475 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~ 335 (424)
|.+|+. +++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus 260 -v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 260 -VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -EEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -EEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999997 588888887655 589999999998888777665443
No 215
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.55 E-value=3.5e-12 Score=123.72 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=188.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCc------eEEecceeecCCCccccCCCCceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~ 77 (424)
.|+.++ .++.|.-+|.++|+.+-++......... +..-. ...++..+++++.+ +.|..+|..+++.....
T Consensus 79 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~v~v~~~d-g~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG--VALWKGKVYVGAWD-GRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC--ceEECCEEEEEcCC-CEEEEEECCCCCEEeee
Confidence 355566 6799999999999999877644321000 01111 22245566666666 99999999999887665
Q ss_pred cCC------CCeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccccC--------------------
Q 014475 78 LPA------EPIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYR-------------------- 123 (424)
Q Consensus 78 ~~~------~~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~-------------------- 123 (424)
... ..+.+ +| .+..+++++. +|.|+.+|.++|+.+..+.....
T Consensus 155 ~~~~~~~~~~~~~~---~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITG---APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCS---CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCccccc---CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 432 11211 11 2345555543 68999999999998876643211
Q ss_pred ------------CeEEEEEccCCcEEEEeeCCC-------------------cEEEEeCCcccchhcccccccceEEeec
Q 014475 124 ------------AVTCLVFSEDGSFLISGSEDG-------------------CVRIWSLLTVFEECESQRASHLYLHSFT 172 (424)
Q Consensus 124 ------------~i~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 172 (424)
....+.++|++..++.+..++ .|..+|.+++... ......
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~---------W~~~~~ 302 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK---------WHYQET 302 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE---------EEEESS
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE---------EEEecC
Confidence 113578888888888877664 4888898774321 112222
Q ss_pred CCc-------CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc------------ce-----------
Q 014475 173 GHT-------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS------------VI----------- 221 (424)
Q Consensus 173 ~~~-------~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------------~i----------- 221 (424)
.|. ....-+....++. ...++.++.+|.+.++|.++++.+..+.... ++
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 221 1111122223431 1478899999999999999999887765211 01
Q ss_pred -------------eEEEECCCCCEEEEEeCC-------------------------------------------CcEEEE
Q 014475 222 -------------DAIALDPAEHVFYAGSRD-------------------------------------------GSIYIA 245 (424)
Q Consensus 222 -------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~ 245 (424)
..++++|+..++++...+ |.|..|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 146788988888876542 678888
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCc
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL 323 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~ 323 (424)
|+.+++ .+-... +..++....+.. +..++.++.||.+++||.++++.+.++....+ ...-+.+..+|+
T Consensus 463 D~~tG~---------~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 463 DPVAQK---------AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp ETTTTE---------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred eCCCCc---------EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 888763 222222 223333334444 78888899999999999999999999985443 334456778886
Q ss_pred eee
Q 014475 324 YLN 326 (424)
Q Consensus 324 ~l~ 326 (424)
.++
T Consensus 533 ~~v 535 (677)
T 1kb0_A 533 QYV 535 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.55 E-value=1.6e-11 Score=108.65 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=150.2
Q ss_pred CeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
-.....|+|+ +.++++...++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~---- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL---- 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE----
Confidence 3467789997 556666667889999999877543 232 34679999999999877654 44 499999865321
Q ss_pred cccccceEEeec--CCcCceeEEEEEEcCceeEEEEEeC------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCE
Q 014475 161 QRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232 (424)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (424)
..+.... .....+.++++++++ ++.++... .+.|..+| +++.............++|+|+++.
T Consensus 122 -----~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 122 -----TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp -----EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCE
T ss_pred -----EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCE
Confidence 1111111 112467889999887 55554432 24455555 4544333333345678999999987
Q ss_pred EEEE-eCCCcEEEEEcC--CC-CCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 233 FYAG-SRDGSIYIAALN--AE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 233 l~~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
++.+ +.++.|.+|+++ ++ .... ......+......+..+++.+ +++.++...++.|..||. +++.+..+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~----~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGK----AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSC----CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred EEEEECCCCEEEEEEcccccCCcccC----ceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 7655 456899999986 33 2110 122222333345567899988 777777666788999998 688888888
Q ss_pred ccCCCeeEEEEE-ecCceeeeccC
Q 014475 308 LAKGPVNNILVV-RRPLYLNLGSF 330 (424)
Q Consensus 308 ~~~~~v~~l~~s-~~~~~l~~~~~ 330 (424)
.+...+++++|+ +++..|.+++.
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCcEEEEEecCCCCEEEEEec
Confidence 777789999999 88877755443
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=4e-13 Score=119.73 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=130.2
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc---------eee-eeccccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---------LLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
..+++.+++++...++++|+.++ +.+|++++.. ... ....+.. |+.++| ++++|+++ .++.|++|
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 34799999999999999999874 7779986543 111 2223556 999999 88999998 88999999
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCC
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA 229 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~ 229 (424)
|+.+.. .......|..++.++.+.+. .+++++.||.|.+||+.+++... +...|++++|+|+
T Consensus 112 dv~sl~-----------~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpk 173 (388)
T 1xip_A 112 DLEELS-----------EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNS 173 (388)
T ss_dssp ESSSTT-----------CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSS
T ss_pred Echhhh-----------ccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCC
Confidence 996632 22234456667777665432 38888999999999999877643 4568999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee------c---ccCcCeEEEEecC-CCEEEE
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL------S---DHSKAVTCLAYST-GDLLIS 285 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~-~~~l~t 285 (424)
| ++.|..||++++|+...... .....+ . +|...|.++.|.+ +.++++
T Consensus 174 G--~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 174 Q--LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E--EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c--eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9 78899999999998877531 002222 2 4788999999998 777776
No 218
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.53 E-value=1.5e-12 Score=115.57 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=183.0
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC-CCC
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AEP 82 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~-~~~ 82 (424)
.|..++ .++.|..|| .+++....+.. +...+..+. ..+++...+ ++. + |..+|. +++....... ...
T Consensus 32 ~l~v~t-~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~--~~~~g~l~v-~t~--~-l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 32 TIYLGS-SNKNLYAIN-TDGSVKWFFKS---GEIIECRPS--IGKDGTIYF-GSD--K-VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp CEECSS-TTTTTEEEC-TTSCEEESSCG---GGEEEECCE--ETTTTEECC-SSC--E-EEEECC-CGGGGGGSCC----
T ss_pred eEEEEc-CCCEEEEEC-CCCcEEEEEec---CCCcccceE--EecCCcEEE-ecC--c-EEEECC-CCcEEEEEECCCCc
Confidence 355666 788999999 88887654432 112233333 445665443 333 5 888886 4443332222 222
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 162 (424)
.....+. +..+.+++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. +.
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~------- 167 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT------- 167 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------
Confidence 2233333 4557777888999999988 777666665555566777777776 5667778899999984 21
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...........+.++...+++ . +..++ +.+..+| .+++...... ....+.++...+++. +++++.++.
T Consensus 168 ----~~~~~~~~~~~~~~~~~d~~g--~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g 236 (330)
T 3hxj_A 168 ----EKWRFKTNDAITSAASIGKDG--T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH 236 (330)
T ss_dssp ----EEEEEECSSCCCSCCEECTTC--C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred ----EeEEEecCCCceeeeEEcCCC--E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe
Confidence 222233334455566655554 4 44555 7899999 7777666655 345677888888775 566777788
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEec
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (424)
+..+|.... ...........+..+...++..|..++.+|.|..+|. +++.+..+......+.++...++
T Consensus 237 l~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~ 305 (330)
T 3hxj_A 237 LYAINPDGT----------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDEN 305 (330)
T ss_dssp EEEECTTSC----------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTT
T ss_pred EEEECCCCC----------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCC
Confidence 888874332 2222332333344455555566777888888999995 78888877766667788888777
Q ss_pred CceeeeccCCCceeeccCCCC
Q 014475 322 PLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 322 ~~~l~~~~~d~~i~iw~~~~~ 342 (424)
+. |..++.+|.+++...+..
T Consensus 306 g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 306 GT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp CC-EEEECTTSCEEEEEC---
T ss_pred CE-EEEEcCCCeEEEEecccc
Confidence 75 556788999998776644
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.52 E-value=4.4e-13 Score=119.45 Aligned_cols=179 Identities=10% Similarity=0.070 Sum_probs=132.7
Q ss_pred CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
.++.+++++...++++|+.+ .+.+|++.+................. ..+.. |+.++| ++ ..|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HG--DQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ET--TEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CC--CEEEEE-cCCcEEE
Confidence 68999999999999999988 56679986644211111111111111 23555 999999 55 788888 8899999
Q ss_pred EecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC
Q 014475 204 WSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (424)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 281 (424)
||+++........ +...+.++.+.+.. +++++.||.+.+||+.... .. .+...|++++|+| |
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTNSQ- 174 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECSSE-
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcCCc-
Confidence 9998766544443 56677777766543 8889999999999999763 11 1456899999999 6
Q ss_pred EEEEeCCCCcEEEEeCCCCcE--EEEE------e---ccCCCeeEEEEEecCceeee
Q 014475 282 LLISGSEDGMVRVWDPITHNI--VRMF------R---LAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 282 ~l~t~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~~ 327 (424)
++.|..||++++|+...++. .+++ . +|...|.++.|.+++.++++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 77888999999999887775 6666 2 36788999999999999886
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=3e-11 Score=105.47 Aligned_cols=218 Identities=10% Similarity=0.101 Sum_probs=143.4
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc----c
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H 121 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~ 121 (424)
|++++..+..+...++.|..||..+++... ......+.+++++|+|+++++. ++.|.+||.++++....... .
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~ 96 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKK 96 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCS
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCC
Confidence 888655555444434899999998776532 3346789999999999965553 46799999987765432221 1
Q ss_pred cCCeEEEEEccCCcEEEEeeCC---------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE
Q 014475 122 YRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 192 (424)
...++.++++|+|+++++...+ ..-.+|.+... .. ......+....+.++|++++ +.+
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------g~-~~~~~~~~~~pngi~~spdg--~~l 163 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------HH-VKKYFDQVDISNGLDWSLDH--KIF 163 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----------SC-EEEEEEEESBEEEEEECTTS--CEE
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----------CC-EEEEeeccccccceEEcCCC--CEE
Confidence 2357889999999977654322 22345544321 01 11122233456789999988 544
Q ss_pred -EEEeCCCcEEEEec--CCCcee--eee---e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeee
Q 014475 193 -VSASEDRTCKVWSL--LKGRLL--RNI---V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 193 -~~~~~d~~v~iwd~--~~~~~~--~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
++.+.++.|..||+ .++... ..+ . .......++++++|++.++....+.|..||..++ +.+.
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---------~~~~ 234 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---------KRLQ 234 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---------CEEE
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---------eEEE
Confidence 55666789999997 455432 112 1 2356789999999987777777888999999865 4455
Q ss_pred eecccCcCeEEEEec-C-CC-EEEEeCC
Q 014475 264 SLSDHSKAVTCLAYS-T-GD-LLISGSE 288 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~-~-~~-~l~t~~~ 288 (424)
.+..+...+++++|. | ++ ++++...
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 666666789999998 6 44 4444443
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.47 E-value=3.2e-12 Score=125.05 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=154.6
Q ss_pred CCCeeEEEECCCCCEEEEe-----cCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCc---------
Q 014475 80 AEPIKPIAANSHGTYIAGG-----GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------- 145 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~--------- 145 (424)
...+..++|||||++||.+ +....|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3468889999999999853 333579999999998654311 11113567899 9999998887743
Q ss_pred ----EEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEE-EEeC---CCcEEEEecCCCc-eeeee
Q 014475 146 ----VRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIV-SASE---DRTCKVWSLLKGR-LLRNI 215 (424)
Q Consensus 146 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~-~~~~---d~~v~iwd~~~~~-~~~~~ 215 (424)
|++|++.+... ....+..... |......+.+++++ ++|+ +.+. +..|.++|+.++. ....+
T Consensus 206 ~~~~v~~~~lgt~~~-------~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQE-------DDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp CCCEEEEEETTSCGG-------GCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred CCcEEEEEECCCCcc-------cceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 99999866321 1123333333 44556788899998 5554 3332 3589999998763 33344
Q ss_pred e-cCcceeEEEECCCCCEEEEEeC-C---CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-
Q 014475 216 V-FPSVIDAIALDPAEHVFYAGSR-D---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE- 288 (424)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~- 288 (424)
. ........ +++++..|+..+. + +.|..+|+.+... .....+..|...+. .|++ ++.|+....
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 3 33434443 6666666655443 3 5788999887531 11223444555554 7788 777766654
Q ss_pred CC--cEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCC----CceeeccCCCCC
Q 014475 289 DG--MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGSQ 343 (424)
Q Consensus 289 dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d----~~i~iw~~~~~~ 343 (424)
++ .|++||+.. .....+.. ..+.+..+.+++++..|+....+ +.+..|++.+++
T Consensus 347 ~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 347 DATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 44 689999874 44555543 34567778888888877655444 778888887654
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.46 E-value=7.1e-12 Score=111.46 Aligned_cols=267 Identities=9% Similarity=-0.068 Sum_probs=174.5
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCC---------CCceeEEEEECCCCceeeeec-C----
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-P---- 79 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~~~g~i~vwd~~~~~~~~~~~-~---- 79 (424)
+|.+.|..+++.+.++.....+ .+. ++|+++.+.++. ..++.|.+||..+.+...... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-----~i~--~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-----LAV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-----EEE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCCCC-----ceE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 7889999999999999866543 344 999999999886 335899999999988765432 2
Q ss_pred ---CCCeeEEEECCCCCEEEEecC--CCcEEE--EEccCcceeeeeccccCCeEEEEEccCC-cEEEEeeCCCcEEEEeC
Q 014475 80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYM--WEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSL 151 (424)
Q Consensus 80 ---~~~v~~~~~s~~~~~l~~~~~--dg~v~i--wd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~~dg~i~iwd~ 151 (424)
......++++|||++++++.. +..|.+ +|+.+ +..+... +. ..+.|++ ..+++.+.||.+.+.|+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 134679999999999998864 456888 99877 3444321 11 1223433 34566677888888888
Q ss_pred Cc-----ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc--eeeeeec-------
Q 014475 152 LT-----VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIVF------- 217 (424)
Q Consensus 152 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~------- 217 (424)
.+ +...... . ..+.....+. . .+++ ..++..+. +.+.+.|..+.. .+..+..
T Consensus 193 ~~~~~~~~~v~~~~---t----~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 193 AAAPAAAGIVGAQC---T----GAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp CSSCCCCEECCCCS---C----TTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred ccccccCCeEEEEe---e----eeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 65 2110000 0 0011112232 2 4444 44444555 899999986532 2222221
Q ss_pred ----CcceeEEEECCCCCEEEEEeC-C--------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-E
Q 014475 218 ----PSVIDAIALDPAEHVFYAGSR-D--------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-L 282 (424)
Q Consensus 218 ----~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 282 (424)
+.....++++|+++.++++.. . +.+.++|+.+. +.+..+.... ....++++| ++ .
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---------~vv~~i~vg~-~p~gi~~s~Dg~~l 328 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---------QTSGPISNGH-DSDAIIAAQDGASD 328 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---------CEEECCEEEE-EECEEEECCSSSCE
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---------eEEEEEECCC-CcceEEECCCCCEE
Confidence 122233789999998887643 2 35679999986 3444444332 578899999 65 5
Q ss_pred EEEeC-CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 283 LISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 283 l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
+++.. .++.|.++|+.+++.+.++.....+ ..+++.
T Consensus 329 ~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~~ 365 (368)
T 1mda_H 329 NYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQ 365 (368)
T ss_dssp EEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred EEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence 66666 5999999999999999999865443 445443
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=2e-11 Score=119.46 Aligned_cols=239 Identities=10% Similarity=0.039 Sum_probs=153.2
Q ss_pred CceEEecceeecCCCccccC----CCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCc---------
Q 014475 37 HGLACVGQRFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD--------- 103 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--------- 103 (424)
..+..+. |+|||+++|.+ +.+...|++||+.+++......+......++|+ |++.|+.++.+..
T Consensus 129 ~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3566666 99999999843 333478999999998864432222224678999 9999998877643
Q ss_pred ----EEEEEccCcce----eeeecc-ccCCeEEEEEccCCcEEEEeeC----CCcEEEEeCCcccchhcccccccceEEe
Q 014475 104 ----IYMWEVASGRL----LKKWHA-HYRAVTCLVFSEDGSFLISGSE----DGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 104 ----v~iwd~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
|++|++.++.. +..... |......+.|+||+++|+.... +..|+++|+.++. . ....
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~---------~-~~~~ 275 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN---------A-PLLT 275 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT---------C-CCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC---------C-ceEE
Confidence 99999977642 333333 4556788999999998865432 3489999986521 1 1223
Q ss_pred ecCCcCceeEEEEEEcCceeEEEEEeCC---CcEEEEecCCCce---eeeeecCcceeEEEECCCCCEEEEEeCCC---c
Q 014475 171 FTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEHVFYAGSRDG---S 241 (424)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~l~~~~~d---~~v~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~ 241 (424)
+..+....... +++++. .+++.+..+ +.|..+|+.++.. .....+...+. .|+++++.|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 44455544444 556653 455555443 5799999987654 22233444443 8889888887765543 6
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecC-CCEEEEeCCC----CcEEEEeCCCCcE
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNI 302 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~l~t~~~d----g~i~iwd~~~~~~ 302 (424)
|++|++.... ...+. .+...+..+.+++ ++.++....+ +.|..||+.+++.
T Consensus 352 l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 352 VEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEECTTSCE----------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEECCCCe----------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8888887532 22222 2344566777777 5544443333 7899999987763
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=4.7e-11 Score=106.44 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=157.5
Q ss_pred CCeeEEEECCCCCEEEEec--CCCcEEEEEccCcceeeee-------ccccCCeEEEEEccCCcEEEEeeC-----CCcE
Q 014475 81 EPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDGSFLISGSE-----DGCV 146 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~s~~~-----dg~i 146 (424)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988853 2343555655555432 22 234568999999999886665443 5789
Q ss_pred EEEeCCcccchhcccccccceEEeec------CCcCceeEEEEEEcCceeEEEEEe---CCCcEEEEecCCCceeeeeec
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFT------GHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNIVF 217 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~ 217 (424)
.+||+.++. .+..+. .+...+..+++++++. ..+++-. .++.|.+||+.+++..+.+..
T Consensus 96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 999996532 111111 2234568899987542 4555555 678999999987765554321
Q ss_pred ------------------------------CcceeEEEECCCCCEEEEEeCCC-cEEEEEcCCCCCCCCCcCceeee--e
Q 014475 218 ------------------------------PSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIG--S 264 (424)
Q Consensus 218 ------------------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~--~ 264 (424)
...+..++++|+++.|+++...+ .++.++......... ...+... .
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 242 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIE 242 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceE
Confidence 02357899999999888887666 555555321100000 0000000 1
Q ss_pred ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 265 LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
..++......+++++ +.++++...++.|.+||..+++....... +.....+++|.+++.++++.+..+.+.+|..
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~ 319 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNA 319 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBT
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccccc
Confidence 113344567789999 88999988899999999856764333332 2346889999999988888776666666653
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.43 E-value=3.3e-12 Score=113.60 Aligned_cols=250 Identities=9% Similarity=-0.095 Sum_probs=165.9
Q ss_pred eEEEEECCCCceeeeecC-CCCeeEEEECCCCCEEEEec----------CCCcEEEEEccCcceeeeeccc-------cC
Q 014475 62 SILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH-------YR 123 (424)
Q Consensus 62 ~i~vwd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~-------~~ 123 (424)
.|.+.|..+.+......- ..+ .+.++||+++++++. .++.|.+||+.+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 889999999887655432 334 799999999998885 3678999999999999888643 13
Q ss_pred CeEEEEEccCCcEEEEeeC--CCcEEE--EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC
Q 014475 124 AVTCLVFSEDGSFLISGSE--DGCVRI--WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~ 199 (424)
....+.++|||++++++.. +..+.+ +|..+ +..+... .. ..+.|++. ..+++.+.|+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------------v~~i~v~-~~---~~~~p~g~-~~~~~~~~dg 185 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------------DQLTKSA-SC---FHIHPGAA-ATHYLGSCPA 185 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------------EEEEECS-SC---CCCEEEET-TEEECCCCTT
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------------ceEEECC-Cc---eEEccCCC-eEEEEEcCCC
Confidence 4668999999999998864 356888 88844 1122111 11 12345543 4556777889
Q ss_pred cEEEEecCC-----Cceee----eee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec---
Q 014475 200 TCKVWSLLK-----GRLLR----NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--- 266 (424)
Q Consensus 200 ~v~iwd~~~-----~~~~~----~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--- 266 (424)
.+.+.|+.+ ++... .+. ...+. . .+++..++..+. +.+.+.|...... ..+..+.
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-------~v~~~~~~~~ 253 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-------TMKAAIDGNE 253 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-------EEECCCCSSC
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-------eEEEEEEecc
Confidence 988899886 44331 111 12222 3 555666665556 9999999965321 1111110
Q ss_pred ----c---cCcCeEEEEecC-CCEEEEeCC---------CCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCcee-eec
Q 014475 267 ----D---HSKAVTCLAYST-GDLLISGSE---------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLG 328 (424)
Q Consensus 267 ----~---~~~~i~~~~~~~-~~~l~t~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~ 328 (424)
. .......++++| ++.++.+.. ++.+.++|+.+++.+.++.... ....++|+|||+++ ++.
T Consensus 254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEE
T ss_pred ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEc
Confidence 0 111122267888 666665422 2356699999999999887544 57899999999854 555
Q ss_pred c-CCCceeeccCCCCCCC
Q 014475 329 S-FSNPHTSSRRHGSQLP 345 (424)
Q Consensus 329 ~-~d~~i~iw~~~~~~~~ 345 (424)
. .++.|.++|+.+.+..
T Consensus 333 ~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 333 SAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp ETTTTEEEEEESSSCEEE
T ss_pred cCCCCeEEEEECCCCcEE
Confidence 5 5899999999977643
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.42 E-value=6.3e-11 Score=109.61 Aligned_cols=305 Identities=11% Similarity=0.028 Sum_probs=206.9
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCC------------------------------------CCCceEEeccee
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCAS------------------------------------PPHGLACVGQRF 46 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------------------~~~~v~~~~~~~ 46 (424)
..+.||+ ..|.|+|+-+.+++.++.+.-... ......... .
T Consensus 16 ~~f~s~g-~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~--~ 92 (595)
T 1fwx_A 16 YGFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVH--M 92 (595)
T ss_dssp EEEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEE--E
T ss_pred EEEeeCC-cCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccc--c
Confidence 3467788 999999999999999987753211 011122233 4
Q ss_pred ec-----CCCccccCCCCceeEEEEECCCCceee--eecCCCCeeEEEE-C-CCCCEEEEec------------------
Q 014475 47 LA-----SSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAA-N-SHGTYIAGGG------------------ 99 (424)
Q Consensus 47 ~~-----~~~~l~~~~~~~g~i~vwd~~~~~~~~--~~~~~~~v~~~~~-s-~~~~~l~~~~------------------ 99 (424)
+. ||+++.+...+++.|.+.|+++.+... ..........+++ + |+++++++++
T Consensus 93 s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 93 SFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 44 899999888877899999999987553 3333567889998 5 9999998884
Q ss_pred CCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC---------------cEEEEeCCcccchhcccccc
Q 014475 100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 100 ~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~ 164 (424)
.++.+.+.|.++.+...++.... ....+.++|+|+++++.+.+. .|.+.|.....
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--------- 242 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--------- 242 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH---------
T ss_pred cCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee---------
Confidence 34579999999998888876433 456788999999999888663 24444432110
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC--Cce-eeeeecCcceeEEEECCCCCEEEEEe-CCC
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRL-LRNIVFPSVIDAIALDPAEHVFYAGS-RDG 240 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 240 (424)
.+.+++...++ +.|.+.|.++ ++. +..+..+....++.++|||+++++++ .+.
T Consensus 243 -----------------~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 243 -----------------KAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp -----------------HHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSS
T ss_pred -----------------EeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCC
Confidence 01122321222 5599999998 555 56777777889999999999888766 577
Q ss_pred cEEEEEcCCCCCC---CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC----------CcEEEEE
Q 014475 241 SIYIAALNAESPS---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMF 306 (424)
Q Consensus 241 ~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~----------~~~~~~~ 306 (424)
+|.++|+.+.... ............. -......++|+| |...++.-.|+.|.+||+.+ .+.+.++
T Consensus 300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki 378 (595)
T 1fwx_A 300 TVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL 378 (595)
T ss_dssp BEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE
T ss_pred eEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe
Confidence 9999999864100 0000011222222 234578899999 85556677899999999987 5677888
Q ss_pred eccCCCe-----eEEEEEecCceeeecc---CCCce----------eeccCCCCCC
Q 014475 307 RLAKGPV-----NNILVVRRPLYLNLGS---FSNPH----------TSSRRHGSQL 344 (424)
Q Consensus 307 ~~~~~~v-----~~l~~s~~~~~l~~~~---~d~~i----------~iw~~~~~~~ 344 (424)
..|-.+- ..+.++|||++|+++. .|..+ .+.|+.+.++
T Consensus 379 dV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 379 DVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp ECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 7765432 2234579999998754 23321 6778766554
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.41 E-value=8.7e-11 Score=102.92 Aligned_cols=221 Identities=10% Similarity=0.086 Sum_probs=142.5
Q ss_pred EEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec
Q 014475 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (424)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 119 (424)
.... |+++++.|+..+..++.|..|+.. ++......+...+..++++++|+++++...++.|.+|+.. ++......
T Consensus 48 egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 48 EGPA--WWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp EEEE--EEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred cCCe--EeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 3445 999999554444444899999984 4444444566788999999999977776666789999975 54322211
Q ss_pred ---c-ccCCeEEEEEccCCcEEEE----eeC-------------CCcEEEEeCCcccchhcccccccceEEeecCCcCce
Q 014475 120 ---A-HYRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (424)
Q Consensus 120 ---~-~~~~i~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (424)
+ ....++.+.+.|+|+++++ |.. .+.|..+|..++. ...+ . .....
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~---------~~~~---~-~~~~p 190 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP---------LQRM---A-DLDHP 190 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---------CEEE---E-EESSE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---------EEEE---e-cCCCC
Confidence 1 1235678999999998886 332 2457777764421 1111 1 23355
Q ss_pred eEEEEEEcCceeEEEEEeCC------CcEEEEecCCCcee--eeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 179 TDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLL--RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~--~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
..++|++++ +.|+.+... +.|..||+..+... ..+. .......++++++|+ +++++.+ .|.+|+..
T Consensus 191 ~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 191 NGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD 266 (305)
T ss_dssp EEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred cceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence 788999998 666666554 78999998765411 1111 234456789999999 4555544 49999885
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcE
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i 292 (424)
. +.+..+..+. .+.+++|++ ++.|..++.++..
T Consensus 267 g----------~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 267 G----------QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp S----------CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred C----------CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence 4 3344444333 588899988 7777766665433
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.39 E-value=2.3e-10 Score=101.15 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=139.7
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeecc----c
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H 121 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~ 121 (424)
|+|+++.++.+...++.|..||.++++.... .....+.+++++|+|+++++. .+ .|.+||..+++....... .
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCC
Confidence 8998665555544448999999987765432 235689999999999877764 44 499999988765432211 1
Q ss_pred cCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEE-EE
Q 014475 122 YRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VS 194 (424)
Q Consensus 122 ~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~ 194 (424)
...+..+.++|+|+++++... .+.|..++ ++. ...+..+......++|++++ +.+ ++
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~------------~~~~~~~~~~~~~i~~s~dg--~~lyv~ 196 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK------------VTKLFADISIPNSICFSPDG--TTGYFV 196 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE------------EEEEEEEESSEEEEEECTTS--CEEEEE
T ss_pred CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc------------EEEeeCCCcccCCeEEcCCC--CEEEEE
Confidence 235889999999987765542 23455555 211 11111122345688999887 555 44
Q ss_pred EeCCCcEEEEecC--CC-cee--eeee----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 195 ASEDRTCKVWSLL--KG-RLL--RNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 195 ~~~d~~v~iwd~~--~~-~~~--~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
.+.++.|.+||+. ++ +.. ..+. ....+..++++++|.++++...++.|..||... +.+..+
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g----------~~~~~i 266 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARY 266 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC----------CEEEEE
Confidence 4567899999986 55 321 1121 234577899999998777776778899998743 334445
Q ss_pred cccCcCeEEEEec-C-CCEE-EEeCCC
Q 014475 266 SDHSKAVTCLAYS-T-GDLL-ISGSED 289 (424)
Q Consensus 266 ~~~~~~i~~~~~~-~-~~~l-~t~~~d 289 (424)
..+...+++++|+ + ++.| ++...+
T Consensus 267 ~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 267 EVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 5556679999998 6 5555 444443
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=2.2e-10 Score=111.19 Aligned_cols=243 Identities=9% Similarity=0.070 Sum_probs=157.7
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCC-CCCC-CceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSC-ASPP-HGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~ 77 (424)
.|+.++ .|+.|..+|.++|+.+-++... .... ..+.... ...++..++..+. .+|.|+.+|..+++.....
T Consensus 130 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p--~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 130 KVYVGA-WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP--RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc--EEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 456667 7899999999999999887754 2110 1122111 2234444433321 1399999999999887654
Q ss_pred cCCCC---------------------------------eeEEEECCCCCEEEEecCCC-------------------cEE
Q 014475 78 LPAEP---------------------------------IKPIAANSHGTYIAGGGQSG-------------------DIY 105 (424)
Q Consensus 78 ~~~~~---------------------------------v~~~~~s~~~~~l~~~~~dg-------------------~v~ 105 (424)
....+ ...++++|++..++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 32111 13578889888888887664 499
Q ss_pred EEEccCcceeeeecc--cc-------CCeEEEEEccCC---cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC
Q 014475 106 MWEVASGRLLKKWHA--HY-------RAVTCLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG 173 (424)
Q Consensus 106 iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 173 (424)
.+|.++|+.+..++. |. .....+....+| ..++.++.+|.++++|.+++................+..
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999998877653 21 222333444467 679999999999999998875433221111000000000
Q ss_pred Cc------------------------CceeEEEEEEcCceeEEEEEeC--------------------------------
Q 014475 174 HT------------------------LRITDIVIGYGGVSATIVSASE-------------------------------- 197 (424)
Q Consensus 174 ~~------------------------~~i~~~~~~~~~~~~~l~~~~~-------------------------------- 197 (424)
.. ..-..++++|+. .++++...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 00 001246677765 45555432
Q ss_pred -----------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 198 -----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 198 -----------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
.|.|..||+.+++.+..+.+..+.....+...+..+++++.||.+++||.++++
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 278999999999999888876666666666778889999999999999999984
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.37 E-value=1.3e-09 Score=98.40 Aligned_cols=268 Identities=9% Similarity=0.038 Sum_probs=167.1
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecC----------CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLP----------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
.+..+.+++.+ +.|..+|..+++....... ...+.+. ...++..+++++.++.|..+|.++|+.+...
T Consensus 52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 34555566655 8999999998887765443 2223222 1224556777888999999999999988766
Q ss_pred ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 198 (424)
............. +..+++++.++.|..+|..++........... ........ ..... + ..++.++.+
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~----~~~~~-~---~~v~~g~~~ 197 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP--SLSLRGES----APTTA-F---GAAVVGGDN 197 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCC----CCEEE-T---TEEEECCTT
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC--ceeecCCC----CcEEE-C---CEEEEEcCC
Confidence 5433222222222 44677888899999999977543211111000 00000011 11121 2 467788889
Q ss_pred CcEEEEecCCCceeeeeecCcce-----e---EEEECC--CCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc
Q 014475 199 RTCKVWSLLKGRLLRNIVFPSVI-----D---AIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (424)
Q Consensus 199 ~~v~iwd~~~~~~~~~~~~~~~i-----~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (424)
+.+..+|..+++.+.......+. . .+...| .+..+++++.++.+..+|..+++. +-...
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---------~w~~~-- 266 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---------MWKRE-- 266 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------EEEEC--
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------Eeecc--
Confidence 99999999999988777633211 0 011222 356788888899999999988742 21111
Q ss_pred CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 269 SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 269 ~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
......+... +..++.++.++.|..+|..+++.+...... ...+..... .+..|..++.+|.+..+|..+++.
T Consensus 267 ~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 267 LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 1223333333 677788888999999999999988776622 223333333 345788888899999999887754
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.31 E-value=1.9e-14 Score=129.66 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=140.9
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccC-CeE-
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-AVT- 126 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~i~- 126 (424)
++..+++++.+ |.|+.||..+++..+.... +++.+..+..++..+++++.||.|+.||.++|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 56677777776 9999999999998877655 6666666667888888888999999999999987766543311 010
Q ss_pred EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~ 206 (424)
...+. .+..+++++.++.++.||.+++... ..+..+. ...++|.+ ..+++++.++.|+.||.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~-----------w~~~~~~----~~~~~p~~--~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ-----------QTLSSAF----ADSLSPST--SLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------------------EEEEEEEEEEECCCS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEE-----------EEecCCC----cccccccC--CEEEEEecCCEEEEEEC
Confidence 00111 3456888889999999999875432 1222221 12344544 78889999999999999
Q ss_pred CCCceeeeeecCcceeEEEECCCC---CEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEE-EEecCCCE
Q 014475 207 LKGRLLRNIVFPSVIDAIALDPAE---HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDL 282 (424)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~ 282 (424)
++++.+..+.... ....++.++. ..+++++.+|.++.||.++++ .+-... ...++.. ..++++..
T Consensus 148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~---------~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD---------VLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC---------EEEEEE-CSSCEEEEEECTTSSC
T ss_pred CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc---------EEEEec-CCCceEEEEEecCCce
Confidence 9999877765321 2223333332 567788999999999998874 222222 2334433 23333222
Q ss_pred E-----EEeCCCCcEEEEeCCCCc----EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 283 L-----ISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 283 l-----~t~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+ +.+ ++.++.+|..+|+ .+..+... +.+. ...-.+..|..++.||.++..+..
T Consensus 217 ~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~--sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 217 RKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE--AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH--HHHHSEEEECBEECSSCEECCEEE
T ss_pred Eeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc--ccccccceEEEecccCCEEecCcc
Confidence 1 112 3445666666665 44333211 1111 000123467778888988888776
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.31 E-value=7.6e-10 Score=107.65 Aligned_cols=243 Identities=9% Similarity=0.115 Sum_probs=155.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCC-C-CCCCceEEecceeecCCCccccCCC----CceeEEEEECCCCceeeee
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSC-A-SPPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS 77 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~----~~g~i~vwd~~~~~~~~~~ 77 (424)
.|+.++ .|+.|..+|.++|+.+-++... . .....+.+.. ...++..++..+. .+|.|..||..+++.....
T Consensus 123 ~v~v~~-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 123 KVYVGV-LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP--RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEc-cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc--EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 466777 7999999999999999777653 1 1111122111 2224554443322 1389999999999887654
Q ss_pred cC--CC------------------------------CeeEEEECCCCCEEEEecCCCc-------------------EEE
Q 014475 78 LP--AE------------------------------PIKPIAANSHGTYIAGGGQSGD-------------------IYM 106 (424)
Q Consensus 78 ~~--~~------------------------------~v~~~~~s~~~~~l~~~~~dg~-------------------v~i 106 (424)
.. .. ....++++|++..++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 31 00 1125788898888998887763 999
Q ss_pred EEccCcceeeeecc--cc-------CCeEEEEEccCCc---EEEEeeCCCcEEEEeCCcccchhcccccccceEEe----
Q 014475 107 WEVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS---- 170 (424)
Q Consensus 107 wd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---- 170 (424)
+|.++|+.+..++. |. .++.......+|+ .++.++.+|.++++|.+++................
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999887754 21 1222222223565 78899999999999998876532211110000000
Q ss_pred ----------------------ecCC--cCceeEEEEEEcCceeEEEEEeC-----------------------------
Q 014475 171 ----------------------FTGH--TLRITDIVIGYGGVSATIVSASE----------------------------- 197 (424)
Q Consensus 171 ----------------------~~~~--~~~i~~~~~~~~~~~~~l~~~~~----------------------------- 197 (424)
..+. ...-..++++|+. .++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0000 0011235666665 44444321
Q ss_pred ----------------CCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 198 ----------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 198 ----------------d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
+|.|..||+.+++.+..+....+...-.+...+.++++++.||.++.||.++++
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 378999999999999888866555544566678899999999999999999984
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=1.1e-08 Score=99.30 Aligned_cols=300 Identities=14% Similarity=0.143 Sum_probs=179.0
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCc------eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL 78 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~ 78 (424)
|+.++ .++.|.-+|.++|+.+-++......... ...-. ....+..+++++.+ +.|..+|..+++......
T Consensus 69 vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG--VALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEEBTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred EEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccc--eEEECCEEEEEcCC-CEEEEEECCCCCEeeeec
Confidence 45555 6789999999999999877543221100 00000 11234556666666 999999999998876654
Q ss_pred CCC--CeeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccc--c------------------------
Q 014475 79 PAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAH--Y------------------------ 122 (424)
Q Consensus 79 ~~~--~v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~--~------------------------ 122 (424)
... ....+..+| .+..++++.. +|.|..+|.++|+.+..+... .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 321 011111122 1334555543 589999999999988766421 0
Q ss_pred -----CCeEEEEEccCCcEEEEeeCCCc-------------------EEEEeCCcccchhcccccccceEEeecCCc---
Q 014475 123 -----RAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT--- 175 (424)
Q Consensus 123 -----~~i~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (424)
.....+++.|+...++.++.++. |..+|.+++... .......|.
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~---------W~~~~~~~~~wd 295 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA---------WHYQVTPGDSWD 295 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE---------EEEESSTTCCSC
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee---------eEeecCCCcccc
Confidence 01124678887788888877663 888998774321 222222222
Q ss_pred ----CceeEEEEEEcCc-eeEEEEEeCCCcEEEEecCCCceeeeeecCc-------------ce----------------
Q 014475 176 ----LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------VI---------------- 221 (424)
Q Consensus 176 ----~~i~~~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------~i---------------- 221 (424)
.+.....+..++. ...++.++.+|.+.++|..+|+.+....... ++
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 2222223333542 1368899999999999999999885443111 00
Q ss_pred --------eEEEECCCCCEEEEEe------------------------------------CCCcEEEEEcCCCCCCCCCc
Q 014475 222 --------DAIALDPAEHVFYAGS------------------------------------RDGSIYIAALNAESPSTSSY 257 (424)
Q Consensus 222 --------~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~ 257 (424)
..++++|+...+++.. .+|.|..||..+++
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~------ 449 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK------ 449 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE------
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc------
Confidence 1256777766666532 23678888888763
Q ss_pred CceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEEecCc-eeee
Q 014475 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNL 327 (424)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~ 327 (424)
.+-....+ .+.....+.. +.+++.++.||.|+.||.++++.+..++...+.. .-+.+..+|+ +++.
T Consensus 450 ---~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~ 518 (668)
T 1kv9_A 450 ---AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (668)
T ss_dssp ---EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ---EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEE
Confidence 22222211 2222222333 7889999999999999999999999988654321 2344456665 4444
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.30 E-value=1.1e-08 Score=91.65 Aligned_cols=219 Identities=15% Similarity=0.184 Sum_probs=145.9
Q ss_pred CCCCEEEE-ecCCCcEEEEEccCc----ceeeeec-------cccCCeEEEEEccCCcEEEEeeCC------CcEEEEeC
Q 014475 90 SHGTYIAG-GGQSGDIYMWEVASG----RLLKKWH-------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSL 151 (424)
Q Consensus 90 ~~~~~l~~-~~~dg~v~iwd~~~~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~d------g~i~iwd~ 151 (424)
+++++|++ +..++.|+++|+.+. +..+++. ........+...|++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77777765 556788999999755 5555552 112245667888999 77766655 78999998
Q ss_pred CcccchhcccccccceEEeecCC--c-CceeEEEEEEcCceeEEEEEe-------------------CCCcEEEEecCCC
Q 014475 152 LTVFEECESQRASHLYLHSFTGH--T-LRITDIVIGYGGVSATIVSAS-------------------EDRTCKVWSLLKG 209 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~~~l~~~~-------------------~d~~v~iwd~~~~ 209 (424)
++. ..+..+... . .--..+.|+|++ +.++++. .+.+|.+||+.++
T Consensus 172 ~T~-----------~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 172 YSF-----------EPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp TTC-----------CEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred CCC-----------eEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 653 233333311 1 223357788888 7777774 3689999999999
Q ss_pred ceeeeeecC---cceeEEEE--CCCCCEEEEEe------CCCcEEEEEcCCCCCCCCCcCceeeee--ecc---------
Q 014475 210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS--LSD--------- 267 (424)
Q Consensus 210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~--------- 267 (424)
+.+..+... .....+.| +|+++++++++ .+++|.+|..+.+. +...+. +..
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEECCSSCCG
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCccccccccc
Confidence 888888754 34455555 99999988877 45688877765421 111111 000
Q ss_pred -------cCcCeEEEEecC-CCEEEEeC-CCCcEEEEeCCC---CcEEEEEeccC--------------CCeeEEEEEec
Q 014475 268 -------HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPIT---HNIVRMFRLAK--------------GPVNNILVVRR 321 (424)
Q Consensus 268 -------~~~~i~~~~~~~-~~~l~t~~-~dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~l~~s~~ 321 (424)
-......+.+++ +++|.++. ..+.|.+||+.. .+.+..+.... +.-..+.++||
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 024578899999 88777665 478999999863 35565554321 12478999999
Q ss_pred Cceeeecc
Q 014475 322 PLYLNLGS 329 (424)
Q Consensus 322 ~~~l~~~~ 329 (424)
|++|.++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99998876
No 235
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.29 E-value=9.1e-13 Score=118.62 Aligned_cols=202 Identities=11% Similarity=0.080 Sum_probs=113.4
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 170 (424)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||.+++.... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-----------~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-----------K 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-----------E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-----------e
Confidence 577899999999999999999999888775 455555566677788888899999999997643211 1
Q ss_pred ecCCcC-cee-EEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 171 FTGHTL-RIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 171 ~~~~~~-~i~-~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
+..+.. .+. ...+. .+ ..+++++.++.++.||.++|+.+..+..... ..++|++..+++++.++.|+.||.+
T Consensus 75 ~~~~~~~~~~~sp~~~-~~--~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 75 LPFTIPELVQASPCRS-SD--GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSS
T ss_pred eeccCccccccCceEe-cC--CEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECC
Confidence 111110 000 00111 22 5678888899999999999998877764432 3456788899999999999999998
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC----CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE-EEEEecCc
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN-ILVVRRPL 323 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~ 323 (424)
+++... .+..+. .....+.+ +..+++++.||.|+.||.++|+.+.++.. ..++.. ..+++++.
T Consensus 149 tG~~~W---------~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 149 TRELRW---------NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp SSSCCC---------EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred CCCEEE---------eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 875321 111110 11122222 26677888999999999999999888773 445543 33445553
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.28 E-value=1.7e-08 Score=86.47 Aligned_cols=240 Identities=10% Similarity=-0.011 Sum_probs=149.9
Q ss_pred eeEEEEECCCCcee------eeecCCCCeeEEEECCCCCEEE-EecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC
Q 014475 61 GSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133 (424)
Q Consensus 61 g~i~vwd~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 133 (424)
+.|+.++++..... ........+..++|++++..|. +-..++.|..+++..+.....+.........++++++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 67888887765421 1111234678999999655554 5455788999998765543333333357899999986
Q ss_pred Cc-EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--CCcEEEEecCCCc
Q 014475 134 GS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--DRTCKVWSLLKGR 210 (424)
Q Consensus 134 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~ 210 (424)
+. .+++-...+.|.++++.... ...+ ..........+++++++. ..+++... .+.|..+++...
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~~---------~~~~--~~~~~~~P~~i~vd~~~g-~lyv~~~~~~~~~I~~~~~dg~- 156 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGTQ---------RRVL--FDTGLVNPRGIVTDPVRG-NLYWTDWNRDNPKIETSHMDGT- 156 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS---------CEEE--ECSSCSSEEEEEEETTTT-EEEEEECCSSSCEEEEEETTSC-
T ss_pred CCeEEEEECCCCEEEEEEcCCCC---------EEEE--EECCCCCccEEEEeeCCC-EEEEEECCCCCcEEEEEecCCC-
Confidence 54 44555556789999985311 1111 111224567899998651 34444333 468888887643
Q ss_pred eeeeee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeC
Q 014475 211 LLRNIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287 (424)
Q Consensus 211 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~ 287 (424)
....+. .......++++|++..|+.+. ..+.|..+|..... ...... .......++...+.++++..
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~-~~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLE-GLQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEE-CCCSEEEEEEETTEEEEEET
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---------eEEEec-CCCCceEEEEeCCEEEEEEC
Confidence 233332 234578899999877666554 56789999987632 111122 12334566655455566666
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCC-CeeEEEEEecCc
Q 014475 288 EDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL 323 (424)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~ 323 (424)
..+.|..+|..+++.+..+..... ....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 678999999999999998875432 467888888764
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.23 E-value=1.4e-08 Score=90.85 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=159.7
Q ss_pred ceEEEeCCC-----CceEEEeeCCC----CCCCce----EEecceee--cCCCccccCCCCceeEEEEECCCC--ceee-
Q 014475 14 GIGCWDLES-----GAEQLRYKSCA----SPPHGL----ACVGQRFL--ASSQLREQPSASSGSILYWSWSKP--QVEV- 75 (424)
Q Consensus 14 ~i~vwd~~~-----~~~~~~~~~~~----~~~~~v----~~~~~~~~--~~~~~l~~~~~~~g~i~vwd~~~~--~~~~- 75 (424)
.|.+-|+.. ++.+..+.-.. .|..+- .|+...++ +++++|++.+..++.|.+.|+.+. +...
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 478889887 77777664322 111111 11111146 888888888877799999998643 2111
Q ss_pred eec---------CCCCeeEEEECCCCCEEEEecCC------CcEEEEEccCcceeeeecccc---CCeEEEEEccCCcEE
Q 014475 76 KSL---------PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHY---RAVTCLVFSEDGSFL 137 (424)
Q Consensus 76 ~~~---------~~~~v~~~~~s~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l 137 (424)
+.. .......+..+|+| +++++..+ |.|.++|.++.+.+.++.... ..-..+-|+|+++.+
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence 111 11245667889999 66665544 789999999999998886332 223468889999988
Q ss_pred EEee-------------------CCCcEEEEeCCcccchhcccccccceEEeecCC--cCceeEEEE--EEcCceeEEEE
Q 014475 138 ISGS-------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVI--GYGGVSATIVS 194 (424)
Q Consensus 138 ~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~~l~~ 194 (424)
++.. ...+|.+||+.+. ..+.++... ......+.| +|++ +++++
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------k~~~tI~vg~~g~~P~~i~f~~~Pdg--~~aYV 269 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------KRIHSLTLGEENRMALELRPLHDPTK--LMGFI 269 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------EEEEEEESCTTEEEEEEEEECSSTTC--CEEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------cEeeEEecCCCCCccceeEeeECCCC--CEEEE
Confidence 8874 3678999999652 223333321 223445555 7776 56555
Q ss_pred Ee------CCCcEEEEecCCCce--eeee--ec-----------------CcceeEEEECCCCCEEEEEeC-CCcEEEEE
Q 014475 195 AS------EDRTCKVWSLLKGRL--LRNI--VF-----------------PSVIDAIALDPAEHVFYAGSR-DGSIYIAA 246 (424)
Q Consensus 195 ~~------~d~~v~iwd~~~~~~--~~~~--~~-----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d 246 (424)
++ .+++|.+|..+.++. .+.+ .. ......+.++|++++|+++.. .+.|.+||
T Consensus 270 ~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 270 NMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp EEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55 566887766554321 1111 00 245788999999999998875 57999999
Q ss_pred cCCCCCCCCCcCceeeeeeccc--------------CcCeEEEEecC-CCEEEEeC
Q 014475 247 LNAESPSTSSYGMHIIGSLSDH--------------SKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~~-~~~l~t~~ 287 (424)
+..... .+.+..+... .+....++++| +++|+++.
T Consensus 350 V~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 350 ISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 964321 1333333221 01357899999 88888877
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.22 E-value=1.8e-08 Score=95.70 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=172.2
Q ss_pred EeecCCC-CCceEEEeC-CCCceEEEeeCCCCCC-Cc-----eEEecceeecCCCccccCCCCceeEEEEECCCCceeee
Q 014475 5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK 76 (424)
Q Consensus 5 lat~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~ 76 (424)
|..++ . ++.|.-+|. ++|+.+-++....... .. ...-. ....+..+++++.+ +.|..+|..+++....
T Consensus 65 vyv~~-~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHS-AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG--LAYGAGQIVKKQAN-GHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred EEEEe-CCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccc--cEEECCEEEEEeCC-CEEEEEECCCCCEEEE
Confidence 44555 5 789999999 9999987765432110 00 00000 11234556666665 9999999999988766
Q ss_pred ecCCCC--eeEEEECC--CCCEEEEecC------CCcEEEEEccCcceeeeeccccCC----------------------
Q 014475 77 SLPAEP--IKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRA---------------------- 124 (424)
Q Consensus 77 ~~~~~~--v~~~~~s~--~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~---------------------- 124 (424)
...... -..+.-+| .+..+++++. +|.|..+|.++|+.+.++......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 443220 00111122 1334555544 789999999999987765421110
Q ss_pred ---------------e-EEEEEccCCcEEEEeeCC----------------CcEEEEeCCcccchhcccccccceEEeec
Q 014475 125 ---------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRASHLYLHSFT 172 (424)
Q Consensus 125 ---------------i-~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 172 (424)
+ ..+++.++...+..+..+ +.|..+|.+++.. .......
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~---------~W~~~~~ 291 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA---------KWGYQKT 291 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE---------EEEEESS
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE---------EEEecCC
Confidence 0 135566655566655432 2588889877432 1122222
Q ss_pred CC--------cCceeEEEEEEcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCc--------------ce--------
Q 014475 173 GH--------TLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------VI-------- 221 (424)
Q Consensus 173 ~~--------~~~i~~~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~i-------- 221 (424)
.| ..++. +....++.. ..++.++.+|.+.++|..+++.+....... ++
T Consensus 292 ~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 370 (571)
T 2ad6_A 292 PHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATR 370 (571)
T ss_dssp TTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCC
T ss_pred CCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCC
Confidence 22 12221 112234411 246778889999999999999887765322 11
Q ss_pred ------------------eEEEECCCCCEEEEEeC-------------------------------------CCcEEEEE
Q 014475 222 ------------------DAIALDPAEHVFYAGSR-------------------------------------DGSIYIAA 246 (424)
Q Consensus 222 ------------------~~~~~~~~~~~l~~~~~-------------------------------------dg~i~i~d 246 (424)
..++++|+..++++... +|.|..||
T Consensus 371 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D 450 (571)
T 2ad6_A 371 MDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFD 450 (571)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEEC
T ss_pred CCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEE
Confidence 23567787777777643 36777888
Q ss_pred cCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCC-eeEEEEEecCce
Q 014475 247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLY 324 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~ 324 (424)
..+++ .+-... +...+....+.. +..++.++.||.|+.||.++|+.+.+++..... -.-+.+..+|+.
T Consensus 451 ~~tG~---------~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~ 520 (571)
T 2ad6_A 451 LTTGK---------AKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp TTTCC---------EEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCCC---------EEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence 77764 122221 112222222222 677888999999999999999999998854322 122345577764
Q ss_pred ee
Q 014475 325 LN 326 (424)
Q Consensus 325 l~ 326 (424)
++
T Consensus 521 yv 522 (571)
T 2ad6_A 521 YI 522 (571)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=4.5e-10 Score=99.47 Aligned_cols=253 Identities=14% Similarity=0.055 Sum_probs=157.2
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeE
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 126 (424)
.++. +.+++.+ +.|..|| .+++...... ....+.++...+++. +.+++.+ |..+|. +++.+..+........
T Consensus 29 ~~g~-l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~ 101 (330)
T 3hxj_A 29 KNGT-IYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVS 101 (330)
T ss_dssp TTSC-EECSSTT-TTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred cCCe-EEEEcCC-CEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCccc
Confidence 4554 4455554 7899999 7766654432 233457777777776 4445544 888886 6666555443333233
Q ss_pred EEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEec
Q 014475 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~ 206 (424)
...+. +..+..++.++.|..+|.. +. .......+...+.++...+++ .+..++.++.+..+|.
T Consensus 102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~-----------~~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 102 DFTIF--EDILYVTSMDGHLYAINTD-GT-----------EKWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINP 164 (330)
T ss_dssp CEEEE--TTEEEEECTTSEEEEECTT-SC-----------EEEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECT
T ss_pred CceEE--CCEEEEEecCCEEEEEcCC-CC-----------EEEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECC
Confidence 33333 4457778888999999985 21 122222333345555554443 4677888899999999
Q ss_pred CCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEE
Q 014475 207 LKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLIS 285 (424)
Q Consensus 207 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t 285 (424)
. ++....+. ....+.++...+++.++ +++ +.+..+| .++. ...........+.++...++..|..
T Consensus 165 ~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~---------~~~~~~~~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 165 D-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT---------EKWNFYAGYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp T-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC---------EEEEECCSSCCCSCCEECTTSCEEE
T ss_pred C-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc---------EEEEEccCCcceeceEECCCCeEEE
Confidence 8 77766665 34456677777777744 444 7899999 4442 2233333445677777777445666
Q ss_pred eCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
++.++.|..+| .+++.+..+......+..+...+++ .|..++.+|.+..++..
T Consensus 231 ~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 231 TSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp EETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred EcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence 66778888888 4677777776555555566665555 56667778888888863
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=2.6e-09 Score=95.15 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=148.9
Q ss_pred ceEEecceeecCCCccccCCC-CceeEEEEECCCCceeee-------ecCCCCeeEEEECCCCCEEEEecC-----CCcE
Q 014475 38 GLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQ-----SGDI 104 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~-~~g~i~vwd~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~-----dg~v 104 (424)
....++ ++++|+.+++... +++.++||.+++++.... ..+...+..++++++++++++-.. ++.|
T Consensus 18 ~p~~va--~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNIT--LTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEE--ECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEE--ECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 455666 9999998887532 214355665544432210 113457999999999987776543 5789
Q ss_pred EEEEccCcceeeeecc------ccCCeEEEEEccCC-cEEEEee---CCCcEEEEeCCcccchhcccc---ccc-ceEEe
Q 014475 105 YMWEVASGRLLKKWHA------HYRAVTCLVFSEDG-SFLISGS---EDGCVRIWSLLTVFEECESQR---ASH-LYLHS 170 (424)
Q Consensus 105 ~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~s~~---~dg~i~iwd~~~~~~~~~~~~---~~~-~~~~~ 170 (424)
.+||+.+++.+..+.. +...+..+++++++ ..+++-. .++.|.+||+.++........ ... .....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999887666542 22456899999854 4445554 578999999976432111100 000 00000
Q ss_pred ecC--------------CcCceeEEEEEEcCceeEEEEEeCCC-cEEEEecC---CCc-----e---eeeeecCcceeEE
Q 014475 171 FTG--------------HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL---KGR-----L---LRNIVFPSVIDAI 224 (424)
Q Consensus 171 ~~~--------------~~~~i~~~~~~~~~~~~~l~~~~~d~-~v~iwd~~---~~~-----~---~~~~~~~~~i~~~ 224 (424)
..+ ....+..+++++++ +.|+.+..++ .+..++.. .+. . +...........+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 000 11246789999988 6777776665 44444432 111 0 1111233456789
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEe
Q 014475 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (424)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd 296 (424)
+++++|.++++...++.|.+||..++. ...+... .+...+.++++.+ +.++++.+..+.+.+|.
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~-------~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRA-------YKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTE-------EEEEEEC-GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCC-------EEEEEEC-CceecCCeeEECCCCcEEEEeCccccccccc
Confidence 999999999888889999999984432 1112111 1345688999988 77888777655554443
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.17 E-value=3.2e-07 Score=91.30 Aligned_cols=301 Identities=10% Similarity=0.135 Sum_probs=187.7
Q ss_pred CCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--------CCCC
Q 014475 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------PAEP 82 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------~~~~ 82 (424)
.++.|..||..+++...... ......|.++. ..+++.+.+.+.. +.+..||..+.+...... ....
T Consensus 191 ~~~Gl~~~~~~~~~~~~~~~--~~~~~~i~~i~--~d~~g~lwigt~~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 191 STDGLYTYSITQKTFEKVIP--ILGTKQIQAIL--QQSPTRIWVATEG--AGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp SSSCEEEEETTTCCEEECC------CCCEEEEE--EEETTEEEEEEBS--SCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred CCCCEEEEeCCCCeEEEecC--CCCCCeeEEEE--EcCCCCEEEEECC--CCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 44568899987766443211 11234567766 6677776654433 458889987765432211 2457
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec-------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 155 (424)
|.++...++|.+.+. +.+ -|.+||..+++...... .....|.++...++|. |..|+.++-|..|+..+..
T Consensus 265 i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp EEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred EEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 999999988886554 445 48999987765433221 1236799999998887 5566777778899874421
Q ss_pred chhcccccccceEEee----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCccee
Q 014475 156 EECESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVID 222 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~ 222 (424)
....... .-....|.++....++ .|..|+.++-|..||..+++...... ....|.
T Consensus 342 ---------~~~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 342 ---------FKNIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp ---------SEEECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred ---------ceEEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 1111000 1123457777766554 56778888789999987765433221 135688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee--ecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
+++..++++.|.+|+.++-|..+|..++.. ..... ...+...|.++...+ +.+.+.. .+ -|.+||..+
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 998888888677888877899999887531 11110 002345788998887 6655544 44 488999887
Q ss_pred CcEEEEEe------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 300 HNIVRMFR------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 300 ~~~~~~~~------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
++...... .....|.++...++|...+... +-+..|+..+.+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 481 RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 65433221 1235789999988887666544 457777776543
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=1e-08 Score=95.03 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=154.1
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEeccee-e-cCCCccccC-----------------CCCceeEEE
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-L-ASSQLREQP-----------------SASSGSILY 65 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~-----------------~~~~g~i~v 65 (424)
.++.. .++.|.+.|+.+.+..+.+.-..+ .....++ + . |++++++++ ...++.+.+
T Consensus 105 fVnd~-~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~--~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 105 FMNDK-ANTRVARVRCDVMKCDAILEIPNA--KGIHGLR--PQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEEECSSC--CSEEEEE--ECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred EEEcC-CCCEEEEEECCCceEeeEEeCCCC--CCCccee--eeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 44555 678899999999998885532211 1233333 3 2 556555555 455689999
Q ss_pred EECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCC--------------------------------------cEEEE
Q 014475 66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--------------------------------------DIYMW 107 (424)
Q Consensus 66 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------------------------------~v~iw 107 (424)
.|.++.+......-.+....++++|+|+++++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999988776654434667888999999999887543 36777
Q ss_pred EccC--cce-eeeeccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhccc-ccccceEEeecCCcCceeEEE
Q 014475 108 EVAS--GRL-LKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ-RASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 108 d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 182 (424)
|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+........ ........... -......++
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence 7776 444 344443 34567899999999877655 57799999997642111100 01111222332 234567789
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCC----------CceeeeeecCcce------eEEEECCCCCEEEEEeCCC--cE--
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVI------DAIALDPAEHVFYAGSRDG--SI-- 242 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~----------~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~dg--~i-- 242 (424)
|++++ ...++...|+.|..||+.+ .+.+..+...... ..+..+|||++|++...-. ++
T Consensus 338 F~~dG--~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 338 FDGRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp ECTTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred ECCCC--eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 99988 6777888899999999987 4556666533222 1224579999999976422 23
Q ss_pred ---------EEEEcCCC
Q 014475 243 ---------YIAALNAE 250 (424)
Q Consensus 243 ---------~i~d~~~~ 250 (424)
.++|+..+
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 78888554
No 243
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.14 E-value=8e-08 Score=91.22 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=171.8
Q ss_pred EeecCCC-CCceEEEeC-CCCceEEEeeCCCCCC-Cc-------eEEecceeecCCCc----cccCCCCceeEEEEECCC
Q 014475 5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-------LACVGQRFLASSQL----REQPSASSGSILYWSWSK 70 (424)
Q Consensus 5 lat~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-------v~~~~~~~~~~~~~----l~~~~~~~g~i~vwd~~~ 70 (424)
|+.++ . ++.|.-+|. ++|+.+-++....... .. ...++ +.|.+.. +++++.+ +.|..+|..+
T Consensus 65 vyv~~-~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~d-g~l~AlDa~T 140 (599)
T 1w6s_A 65 MYIHT-SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLD-GNVAALNAET 140 (599)
T ss_dssp EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTT-SEEEEEETTT
T ss_pred EEEEe-CCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCC-CEEEEEECCC
Confidence 44555 5 789999999 9999997775432210 00 01122 4334444 6666666 9999999999
Q ss_pred CceeeeecCCC-----CeeE-EEECCCCCEEEEec------CCCcEEEEEccCcceeeeeccccCC--------------
Q 014475 71 PQVEVKSLPAE-----PIKP-IAANSHGTYIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA-------------- 124 (424)
Q Consensus 71 ~~~~~~~~~~~-----~v~~-~~~s~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~-------------- 124 (424)
++......... .+.+ -.+. ++ .+++++ .+|.|+-+|.++|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98876643322 1211 1111 34 455554 3789999999999987765422110
Q ss_pred -----------------------e-EEEEEccCCcEEEEeeCC----------------CcEEEEeCCcccchhcccccc
Q 014475 125 -----------------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 125 -----------------------i-~~~~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~ 164 (424)
+ ..+++.++...++.+..+ +.|..+|.+++..
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~-------- 290 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA-------- 290 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE--------
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce--------
Confidence 0 134566666677766654 3788888877432
Q ss_pred cceEEeecCCc--------CceeEEEEE-EcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCc--------------c
Q 014475 165 HLYLHSFTGHT--------LRITDIVIG-YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------V 220 (424)
Q Consensus 165 ~~~~~~~~~~~--------~~i~~~~~~-~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~ 220 (424)
........|. .++. +... .++.. ..++.++.+|.+.++|.++++.+....... +
T Consensus 291 -~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 291 -KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp -EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred -eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 2222222221 1121 1111 12211 457778899999999999999887665221 1
Q ss_pred e--------------------------eEEEECCCCCEEEEEeC------------------------------------
Q 014475 221 I--------------------------DAIALDPAEHVFYAGSR------------------------------------ 238 (424)
Q Consensus 221 i--------------------------~~~~~~~~~~~l~~~~~------------------------------------ 238 (424)
+ ..++++|+..++++...
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 1 23566777666665432
Q ss_pred ---CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-CCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-
Q 014475 239 ---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV- 313 (424)
Q Consensus 239 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v- 313 (424)
.|.+..||+.+++. +-... +..+...-... .+.+++.++.||.++.||.++|+.+.+++...+.+
T Consensus 449 ~~~~G~l~A~D~~tG~~---------~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDY---------KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp TBCCEEEEEECTTTCCE---------EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCCcCeEEEEECCCCCE---------EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 34566666665531 11111 11111110111 26788889999999999999999999987554322
Q ss_pred eEEEEEecCc-eeeec
Q 014475 314 NNILVVRRPL-YLNLG 328 (424)
Q Consensus 314 ~~l~~s~~~~-~l~~~ 328 (424)
.-+.+..+|+ |+++.
T Consensus 519 ~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CCEEEEETTEEEEEEE
T ss_pred ccEEEEeCCEEEEEEE
Confidence 2355667776 44443
No 244
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.13 E-value=6.4e-08 Score=92.02 Aligned_cols=305 Identities=14% Similarity=0.153 Sum_probs=172.0
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEE--ecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCC-----Cee-
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-----PIK- 84 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~-----~v~- 84 (424)
+.|.-+|.++|+.+-++...........| +.......+..+++++.+ +.|..+|..+++......... .+.
T Consensus 78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~d-g~l~AlD~~TG~~~W~~~~~~~~~~~~~~~ 156 (582)
T 1flg_A 78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD-ASVVALNKNTGKVVWKKKFADHGAGYTMTG 156 (582)
T ss_dssp TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETT-TEEEEEESSSCCEEEEEECSCGGGTCBCCS
T ss_pred CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCC-CEEEEEECCCCCEEeeecCCCCCcCccccc
Confidence 34999999999998777654322110000 000011134455555555 899999999998876643221 111
Q ss_pred --EEEEC-CCCC-EEEEec------CCCcEEEEEccCcceeeeeccccCCe-----------------------------
Q 014475 85 --PIAAN-SHGT-YIAGGG------QSGDIYMWEVASGRLLKKWHAHYRAV----------------------------- 125 (424)
Q Consensus 85 --~~~~s-~~~~-~l~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~i----------------------------- 125 (424)
.+.=. .+++ .+++++ .+|.|+-+|.++|+.+.........+
T Consensus 157 sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~ 236 (582)
T 1flg_A 157 APTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGK 236 (582)
T ss_dssp CCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSB
T ss_pred CCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccccc
Confidence 11111 1233 566654 37899999999998876543211000
Q ss_pred ------------EEEEEccCCcEEEEeeC--------------------C----CcEEEEeCCcccchhcccccccceEE
Q 014475 126 ------------TCLVFSEDGSFLISGSE--------------------D----GCVRIWSLLTVFEECESQRASHLYLH 169 (424)
Q Consensus 126 ------------~~~~~~~~~~~l~s~~~--------------------d----g~i~iwd~~~~~~~~~~~~~~~~~~~ 169 (424)
..+++.|+...++.+.. | +.|..+|..++.. ....
T Consensus 237 ~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~---------~W~~ 307 (582)
T 1flg_A 237 VESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV---------KWFY 307 (582)
T ss_dssp CGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE---------EEEE
T ss_pred ccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE---------EEEE
Confidence 12456666666665553 2 5788889877432 2222
Q ss_pred eecCCcC----cee-EEEEE---EcCce-eEEEEEeCCCcEEEEecCCCceeeeeecCcce-------------------
Q 014475 170 SFTGHTL----RIT-DIVIG---YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI------------------- 221 (424)
Q Consensus 170 ~~~~~~~----~i~-~~~~~---~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i------------------- 221 (424)
....|.. .+. -+.+. .++.. ..++.++.+|.+.++|.++++.+..+.....+
T Consensus 308 q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 387 (582)
T 1flg_A 308 QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQ 387 (582)
T ss_dssp ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTC
T ss_pred eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcccc
Confidence 2222211 011 12222 13311 36788999999999999999988766532100
Q ss_pred ---------------------------eEEEECCCCCEEEEEeC---------------------------------CCc
Q 014475 222 ---------------------------DAIALDPAEHVFYAGSR---------------------------------DGS 241 (424)
Q Consensus 222 ---------------------------~~~~~~~~~~~l~~~~~---------------------------------dg~ 241 (424)
..++++|+...+++... +|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~ 467 (582)
T 1flg_A 388 RPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS 467 (582)
T ss_dssp SCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEE
T ss_pred CCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcce
Confidence 13456666556655432 466
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-CCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCe-eEEEEE
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVV 319 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s 319 (424)
|..||+.+++. +-..... .++..-... .+.+++.++.||.++.||.++|+.+.+++...+.. .-+.+.
T Consensus 468 l~A~D~~tG~~---------~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 468 LRAMDPVSGKV---------VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp EEEECTTTCCE---------EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred EEEEECCCCCE---------EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence 77788777642 1111111 111111111 27788889999999999999999999998654322 236677
Q ss_pred ecCc-eeeecc-CCCceeec
Q 014475 320 RRPL-YLNLGS-FSNPHTSS 337 (424)
Q Consensus 320 ~~~~-~l~~~~-~d~~i~iw 337 (424)
.+|+ |+++.+ ..|.+-+|
T Consensus 538 ~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 538 QDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp ETTEEEEEEEECCCSHHHHH
T ss_pred ECCEEEEEEEccCCCccccc
Confidence 8886 444432 23445555
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.11 E-value=8.4e-08 Score=84.53 Aligned_cols=239 Identities=10% Similarity=0.009 Sum_probs=150.5
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec--------------------cccCCeEEEEEcc-CCcEEEE
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------------AHYRAVTCLVFSE-DGSFLIS 139 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------------~~~~~i~~~~~~~-~~~~l~s 139 (424)
....+++++++++++.++..++.|..|+..+++.. .+. .....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 34678889999987778888899999998765432 221 1123578999997 665 454
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeecC-CcCceeEEEEEE-cCceeEEEEEeC-----------------CCc
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGY-GGVSATIVSASE-----------------DRT 200 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-~~~~~~l~~~~~-----------------d~~ 200 (424)
+...+.|..+|..++.. ........+ .......+++.+ ++ ...++-.. ++.
T Consensus 97 ~d~~~~i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EETTTEEEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred EECCCCEEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCce
Confidence 54445588888754211 000001111 113457788887 66 55554322 367
Q ss_pred EEEEecCCCceeeeeecCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC
Q 014475 201 CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 279 (424)
|..+|..+++.............++++|+++.|+++ +..+.|..|++...... ........ .+ ...+++.+
T Consensus 167 v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~---~g-P~gi~~d~ 238 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKI---PN-PGNIKRNA 238 (322)
T ss_dssp EEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEEC---SS-EEEEEECT
T ss_pred EEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeC---CC-CCCeEECC
Confidence 888998776644333333456779999999877666 55689999998753210 01112221 23 67889988
Q ss_pred -CCEEEEeCC----------CCcEEEEeCCCCcEEEEEeccC----CCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 280 -GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAK----GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 280 -~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
+++.++... .+.|..+|. .++.+..+.... ..++.+++ .+++..++....+.|..+++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 777666544 467889986 488888776543 34667766 5677777777788888888753
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=2.2e-07 Score=79.44 Aligned_cols=239 Identities=10% Similarity=-0.048 Sum_probs=141.8
Q ss_pred CceEEEeCCCCceE-----EEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEE
Q 014475 13 TGIGCWDLESGAEQ-----LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPI 86 (424)
Q Consensus 13 g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~ 86 (424)
+.|+.+++...... ..+.. +......++ +.+++..+..+...++.|..++.++........ .......+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeecC---CCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE
Confidence 47999998754321 11111 112345666 898776666665444899999998765433222 23578999
Q ss_pred EECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccc
Q 014475 87 AANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 87 ~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~ 162 (424)
+++|++..| ++-...+.|.++++..................++++|++..|..+.. .+.|..+++...
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-------- 156 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-------- 156 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--------
T ss_pred EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--------
Confidence 999975544 45455678999998644322222222356789999996555554443 367888887431
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-CCCc
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGS 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 241 (424)
....+ ..........+++++++. ..+++-...+.|..+|+........+........++.. +..++++. ..+.
T Consensus 157 -~~~~~--~~~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~ 230 (267)
T 1npe_A 157 -NRRIL--AQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS 230 (267)
T ss_dssp -CCEEE--ECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE
T ss_pred -CcEEE--EECCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe
Confidence 11111 112234567889998752 45556666789999998765443333333334566654 44555544 5689
Q ss_pred EEEEEcCCCCCCCCCcCceeeeeecccC-cCeEEEEecC
Q 014475 242 IYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST 279 (424)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 279 (424)
|..+|..++ +.+..+.... .....+++.|
T Consensus 231 v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 231 VIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEeCCCC---------CceEEEccccccccceeeecC
Confidence 999999876 3344443222 2355666665
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=2.2e-08 Score=97.16 Aligned_cols=287 Identities=10% Similarity=0.063 Sum_probs=169.1
Q ss_pred CccccCCCCceeEEEEECCCCceeeeecCCCCe------------eEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPI------------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v------------~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
..+++++.+ +.|.-+|..+++..++....... ..+.+ .+..+++++.|+.|..+|.++|+.+..+
T Consensus 67 g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 67 GVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CEEEEECCC-CeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 344444444 88999999998887765432211 11222 3557788888999999999999988776
Q ss_pred cccc----CCeEE-EEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceE------------Eeec---
Q 014475 119 HAHY----RAVTC-LVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYL------------HSFT--- 172 (424)
Q Consensus 119 ~~~~----~~i~~-~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~--- 172 (424)
.... ..+.+ .... ++ .++++.. +|.|..+|.+++.............. ..+.
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 1111 34 4444433 58899999988654332211000000 0000
Q ss_pred -----CCcCceeEEEEEEcCceeEEEEEeCCC-------------------cEEEEecCCCceeeeeecC----------
Q 014475 173 -----GHTLRITDIVIGYGGVSATIVSASEDR-------------------TCKVWSLLKGRLLRNIVFP---------- 218 (424)
Q Consensus 173 -----~~~~~i~~~~~~~~~~~~~l~~~~~d~-------------------~v~iwd~~~~~~~~~~~~~---------- 218 (424)
++......+++.+.. ..++.++.++ .|..+|.++++.+..+...
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 011112345666665 6777776665 3999999999998887632
Q ss_pred cceeEEEECCCCC---EEEEEeCCCcEEEEEcCCCCCCCCCc----Cc---------eeee------------eecccCc
Q 014475 219 SVIDAIALDPAEH---VFYAGSRDGSIYIAALNAESPSTSSY----GM---------HIIG------------SLSDHSK 270 (424)
Q Consensus 219 ~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~----~~---------~~~~------------~~~~~~~ 270 (424)
.+.....+..+++ .++.++.+|.++++|..+++...... .+ .++. ...+..+
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 2222222223554 68889999999999998876431000 00 0000 0000000
Q ss_pred --CeEEEEecC-CCEEEE------------------------------------eCCCCcEEEEeCCCCcEEEEEeccCC
Q 014475 271 --AVTCLAYST-GDLLIS------------------------------------GSEDGMVRVWDPITHNIVRMFRLAKG 311 (424)
Q Consensus 271 --~i~~~~~~~-~~~l~t------------------------------------~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (424)
.-..++++| ...++. ...+|.|..||+.+++.+.+...+ .
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~ 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-T 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-S
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-C
Confidence 001255666 344332 113488999999999998887743 4
Q ss_pred CeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 312 ~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
+.....+...+..++.++.|+.++.||..+++..
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 4555566677888999999999999999987653
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=2.7e-06 Score=84.68 Aligned_cols=298 Identities=14% Similarity=0.093 Sum_probs=184.4
Q ss_pred CCceEEEeCCCCceEEEeeCC----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--------cC
Q 014475 12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LP 79 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~--------~~ 79 (424)
++.+.+||..+++........ .-....|.++. ..++|.+.+.+ . +-|.+|+..+....... ..
T Consensus 234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 308 (795)
T 4a2l_A 234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLA--MDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENGSLS 308 (795)
T ss_dssp SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEE--ECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEE--EcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCCCCC
Confidence 345889998776544322111 11235678877 77777765544 3 35888998776544321 12
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 153 (424)
...|.++...++|.+. .|+.++-|..|+..++....... .....|.++...++++ |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 4679999999988754 56666679999876654322111 1245699999988876 55577777799999854
Q ss_pred ccchhcccccccceEEee------cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-----cCccee
Q 014475 154 VFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVID 222 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~i~ 222 (424)
.. ....... ......|.++...+++ ..|..|+.++-|..+|..+++...... ....|.
T Consensus 387 ~~---------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 387 QR---------FTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp CC---------EEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred Cc---------EEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 21 1000000 0123567888776665 547788887889999988776433221 235688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee----cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeC
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~ 297 (424)
++...+++.+.+ |+. +.+.+||..++.. ...... .-....|.++...+ +.+.+.. . +-|..||.
T Consensus 456 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~ 524 (795)
T 4a2l_A 456 AILPDGEGNLWL-GTL-SALVRFNPEQRSF-------TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQ 524 (795)
T ss_dssp EEEECSSSCEEE-EES-SCEEEEETTTTEE-------EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEE
T ss_pred EEEECCCCCEEE-Eec-CceeEEeCCCCeE-------EEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeC
Confidence 999888887544 445 4588999876431 111110 11236788998888 6555544 4 45888998
Q ss_pred CCCcEEEEEe-------ccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 298 ITHNIVRMFR-------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 298 ~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
.+++. .+. .+...|.++...++|...++.. . -+..|+..+.
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 77665 332 2335788999888887655443 3 5677776544
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.04 E-value=1.2e-07 Score=79.63 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=136.4
Q ss_pred ceeeeeccccC--CeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccceEEeec--CCcCceeEEEEEEc
Q 014475 113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFT--GHTLRITDIVIGYG 186 (424)
Q Consensus 113 ~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~ 186 (424)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.++. .+..+. .+.. ...+++.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------v~~~i~l~~~~f-geGi~~~-- 74 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-----------VENIHKMDDSYF-GEGLTLL-- 74 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-----------EEEEEECCTTCC-EEEEEEE--
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-----------EEEEEecCCCcc-eEEEEEe--
Confidence 4455553 443 3689999998765555543 5799999997743 222222 2211 1234443
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
+. ...++.-.++.+.++|..+.+.+..+..+ .-....++++++.++++..++.|.++|..+.. .+..+.
T Consensus 75 g~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~---------v~~~I~ 143 (266)
T 2iwa_A 75 NE-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFK---------LIKKHN 143 (266)
T ss_dssp TT-EEEEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCC---------EEEEEE
T ss_pred CC-EEEEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCc---------EEEEEE
Confidence 42 55556667889999999999999988754 11223455678888888788899999998853 233322
Q ss_pred c--c---CcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccC-------------CCeeEEEEEecCce-eee
Q 014475 267 D--H---SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------GPVNNILVVRRPLY-LNL 327 (424)
Q Consensus 267 ~--~---~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~-l~~ 327 (424)
- + -..++.+.|..+..++....++.|.+.|..+++.+..+.... .....++|+|+++. +++
T Consensus 144 Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 1 1 123667777766555666578899999999999999987421 24589999999764 566
Q ss_pred ccCCCceeeccCCCC
Q 014475 328 GSFSNPHTSSRRHGS 342 (424)
Q Consensus 328 ~~~d~~i~iw~~~~~ 342 (424)
+...+.+..-++...
T Consensus 224 gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 224 GKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTCSEEEEEEEEEC
T ss_pred CCCCCeEEEEEEecc
Confidence 767888887777643
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.98 E-value=2.7e-07 Score=76.61 Aligned_cols=190 Identities=12% Similarity=0.130 Sum_probs=126.7
Q ss_pred eeeeeccccCC--eEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 114 LLKKWHAHYRA--VTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 114 ~~~~~~~~~~~--i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
.+.++ .|... ...+.|+ ++.++.+.+.+| .|+.+|+.++.. +...... ......-+.+.++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-----------~~~~~l~-~~~FgeGit~~g~- 97 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-----------LQQIELG-KRYFGEGISDWKD- 97 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-----------EEEEECC-TTCCEEEEEEETT-
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-----------EEEEecC-CccceeEEEEeCC-
Confidence 45555 35544 3788998 677777888776 899999977432 2222211 2222222333442
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-- 267 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 267 (424)
...+..-.++.+.++|..+.+.+..+..+..-..++ +++..|+.+..++.|.++|..+.. .+..+..
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~---------v~~~I~V~~ 166 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT---------PVRTITVTA 166 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS---------EEEEEECEE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe---------EEEEEEecc
Confidence 455555568899999999999999998655333444 567778777767889999998863 2333222
Q ss_pred cC---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc------------CCCeeEEEEEecCceeeecc
Q 014475 268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA------------KGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 268 ~~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~~~~ 329 (424)
.. ..++.+.|..+..++..-.++.|.+.|.++++.+..+... ....+.++++|+++.|.+.+
T Consensus 167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 11 3355677766766666667889999999999999988742 12458899999877766554
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=4e-07 Score=76.50 Aligned_cols=193 Identities=8% Similarity=0.009 Sum_probs=129.3
Q ss_pred CeeEEEECCCCCEEEEecC--CCcEEEEEccCcceeeeecccc-CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 82 PIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
....+.|+|++.+.++.+. ++.|.++|+.+++.+..+.... .....+++.. +...++.-.++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~---- 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTL---- 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTT----
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCC----
Confidence 3689999998765555443 5789999999999888865322 2234566652 344455556889999999653
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC---c---ceeEEEECCCCCE
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---S---VIDAIALDPAEHV 232 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~---~i~~~~~~~~~~~ 232 (424)
..+..+..... ....+++++ +.++.+..++.|.++|..+.+.+..+... . .++.+.+. ++..
T Consensus 97 -------~v~~~i~~g~~--~g~glt~Dg--~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 97 -------SNIKNFTHQMK--DGWGLATDG--KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp -------EEEEEEECCSS--SCCEEEECS--SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred -------cEEEEEECCCC--CeEEEEECC--CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 22333332111 123356676 55555667899999999999988888732 1 35677877 6655
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeeccc-------------CcCeEEEEecC--CCEEEEeCCCCcEEEEeC
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-------------SKAVTCLAYST--GDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~ 297 (424)
++....++.|.+.|..+++ .+..+.-. ....+.++++| +.+++++...+.|...++
T Consensus 165 yvn~~~~~~V~vID~~tg~---------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGT---------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEETTSSEEEEEETTTCC---------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEecCCCCeEEEEECCCCc---------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 5555567899999999874 33333211 13568999999 457778888899988887
Q ss_pred CCC
Q 014475 298 ITH 300 (424)
Q Consensus 298 ~~~ 300 (424)
...
T Consensus 236 ~~~ 238 (266)
T 2iwa_A 236 HLV 238 (266)
T ss_dssp EEC
T ss_pred ecc
Confidence 654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=3.7e-07 Score=86.66 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=143.1
Q ss_pred EEeecCCCCCceEEEeCCCCceEEEeeCCCCC-CCceEEecceeecCCCccccCCCC----ceeEEEEECCCCceeeeec
Q 014475 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVKSL 78 (424)
Q Consensus 4 ~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~~----~g~i~vwd~~~~~~~~~~~ 78 (424)
.|+.++ .|+.|..+|.++|+.+-+....... ...+.+.. ...++..++..... +|.|..+|..+++...+..
T Consensus 117 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEe-CCCEEEEEECCCCCEEEEecCCCCCccceeccCC--EEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 355666 7899999999999998776532210 00122111 12244443333320 3899999999998876544
Q ss_pred CCCCe---------------------------------------eEEEECCCCCEEEEecCC----------------Cc
Q 014475 79 PAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------GD 103 (424)
Q Consensus 79 ~~~~v---------------------------------------~~~~~s~~~~~l~~~~~d----------------g~ 103 (424)
...+. ..+++.++...+..+..+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 32211 235666766666665532 35
Q ss_pred EEEEEccCcceeeeecc--cc--------CCeEEEEEccCCc---EEEEeeCCCcEEEEeCCcccchhcccccc------
Q 014475 104 IYMWEVASGRLLKKWHA--HY--------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS------ 164 (424)
Q Consensus 104 v~iwd~~~~~~~~~~~~--~~--------~~i~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------ 164 (424)
|..+|.++|+.+..++. |. .++ -+....+|+ .++.++.+|.+.++|..++..........
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 99999999998877653 21 222 122224674 57788899999999998865432221110
Q ss_pred ------cceEE--------------eecCCc--CceeEEEEEEcCceeEEEEEe--------------------------
Q 014475 165 ------HLYLH--------------SFTGHT--LRITDIVIGYGGVSATIVSAS-------------------------- 196 (424)
Q Consensus 165 ------~~~~~--------------~~~~~~--~~i~~~~~~~~~~~~~l~~~~-------------------------- 196 (424)
..++. ...+.. ..-..++++|+. ..++..+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCccccccce
Confidence 00000 000000 000234555554 3333332
Q ss_pred -----------CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 197 -----------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 197 -----------~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
.+|.|..||+.+++.+..+.....+....+...+..+++++.||.++.+|.++++
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 3578999999999998888755444333333356778889999999999999874
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.93 E-value=8.3e-06 Score=71.37 Aligned_cols=229 Identities=11% Similarity=-0.043 Sum_probs=142.2
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccC----cceeeeeccccCCeEEEEEcc-CC
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG 134 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~ 134 (424)
..|+..|+++.+..........+..++|++.+. .+++-...+.|..+++.. ......+.........+++.+ ++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 578888988776554444566789999998654 445555668899999875 222222322334567899986 44
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR 213 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~ 213 (424)
+.+++-...+.|.+.++.... ..............+++.|.+. ..+++.... +.|...++.. ....
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~iavdp~~g-~ly~~d~~~~~~I~~~~~dG-~~~~ 156 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNG-VDIY 156 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSS-----------EEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTS-CCEE
T ss_pred eEEEEECCCCEEEEEeCCCCc-----------eEEEEECCCCCcceEEeCCCCC-EEEEEccCCCCeEEEEcCCC-CCeE
Confidence 555555667889999985311 1111122234567889987552 444444333 6788888753 3333
Q ss_pred eee--cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475 214 NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 214 ~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
.+. .-...+.++++|++..|+.+. ..+.|..+|++.... +.+............+++..+.++++-...+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~ 229 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEECCEEEEEECCCC
Confidence 332 234678999999777666654 557899999875321 2222211223345677776577777777788
Q ss_pred cEEEEeCCCCcEEEEEecc
Q 014475 291 MVRVWDPITHNIVRMFRLA 309 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~ 309 (424)
.|..++..+++.+..+...
T Consensus 230 ~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp EEEEEETTTCCCCEEEECS
T ss_pred eEEEEeCCCCcceEEEecC
Confidence 9999998888777766543
No 254
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.91 E-value=6.2e-06 Score=73.21 Aligned_cols=238 Identities=8% Similarity=-0.090 Sum_probs=150.5
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI 138 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~ 138 (424)
..|+..+.+.............+..++|++....| ++-...+.|..+++..+.....+.........+++.+. +++++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~ 132 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 132 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence 56888888776655544455668999999755544 45456788999998766544433333345678999874 55556
Q ss_pred EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceeeeee-
Q 014475 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV- 216 (424)
Q Consensus 139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~- 216 (424)
+-...+.|.+.++.... ........-.....+++.|.+. .++++-... +.|...++..........
T Consensus 133 ~d~~~~~I~~~~~dG~~-----------~~~l~~~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 133 TDSGTSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EETTTTEEEEEETTSCS-----------CEEEECTTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EcCCCCeEEEEcCCCCc-----------eEEEEeCCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 65667789999985411 1111222334568899998552 455555455 788888876433222222
Q ss_pred cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEE
Q 014475 217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295 (424)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iw 295 (424)
.-...+.++++|++..|+.+. ..+.|..++++.... .............+++..+.++++-...+.|..+
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---------EEEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence 234578999998766666554 567899999876421 1112222345677777557777777778889999
Q ss_pred eCCCCcEEEEEeccCCCeeEEEEE
Q 014475 296 DPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
+..+|+.+..+.........+++.
T Consensus 272 ~~~~G~~~~~i~~~~~~p~gi~v~ 295 (349)
T 3v64_C 272 NKFTGKNQEIIRNKLHFPMDIHTL 295 (349)
T ss_dssp ETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EccCCCccEEeccCCCCCceEEEE
Confidence 977887777776444444555554
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.91 E-value=2.6e-07 Score=76.72 Aligned_cols=180 Identities=12% Similarity=0.117 Sum_probs=120.4
Q ss_pred EEecceeecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEE-ecCCCcEEEEEccCcceeee
Q 014475 40 ACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~v~iwd~~~~~~~~~ 117 (424)
..+. |+ ++.+..+++.+ ...|+++|.++++.................++++.|.. .-.++.+.+||.++.+.+.+
T Consensus 46 qGL~--~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 46 EGFF--YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEE--EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ceEE--EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4455 77 66666666654 24999999999988766554455544333334444444 44578999999999999988
Q ss_pred eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--Cc---CceeEEEEEEcCceeEE
Q 014475 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---LRITDIVIGYGGVSATI 192 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~~l 192 (424)
+.... .-..++ ++++.|+.+..++.|.++|..+.. .+..+.- .. ..++.+.+. ++ ...
T Consensus 123 i~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~-----------v~~~I~V~~~g~~~~~lNELe~~-~G--~ly 185 (262)
T 3nol_A 123 FNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLT-----------PVRTITVTAHGEELPELNELEWV-DG--EIF 185 (262)
T ss_dssp EECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCS-----------EEEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred EECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCe-----------EEEEEEeccCCccccccceeEEE-CC--EEE
Confidence 86432 223344 567777766667889999997632 2222211 11 334456665 54 666
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecC-------------cceeEEEECCCCCEEEEEeCC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~d 239 (424)
+..-.++.|.+.|.++++.+..+... ...+.++++|+++.|++.+..
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65557889999999999999888742 345899999988888777654
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=8.4e-06 Score=80.93 Aligned_cols=302 Identities=10% Similarity=0.051 Sum_probs=178.5
Q ss_pred CCCceEEEeCCCCceEEEeeCC-----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee--------
Q 014475 11 ADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-------- 77 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-------- 77 (424)
.++.|..||..+++.. .+... .-....|.++. ..+++.+.+.+ . +.+.+||..+.+.....
T Consensus 181 ~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~--~d~~g~lwigt-~--~Gl~~~d~~~~~~~~~~~~~~~~~~ 254 (781)
T 3v9f_A 181 VEGGLSILSLNDKSVK-HFVHDPQNPNSLPGNDVRCIY--KDTNGNIWIGT-S--KGLALFNANTETFTNFHNNPGNIHG 254 (781)
T ss_dssp TTTEEEEEETTTTEEE-EECC--------CCSSEEEEE--ECTTCCEEEEE-T--TEEEEEETTTTEEEC----------
T ss_pred cCCCeEEEcCCCCceE-eeecCCCCcccCCCCceeEEE--EcCCCCEEEEe-C--CcHheECCCCCcEEEEEcCCCcccc
Confidence 3445888898766543 22211 11234577766 66777665543 3 35888998766543221
Q ss_pred cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec--------------cccCCeEEEEEccCCcEEEEeeCC
Q 014475 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------AHYRAVTCLVFSEDGSFLISGSED 143 (424)
Q Consensus 78 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~s~~~d 143 (424)
.....|.++...++|.+.+ |+..+-|.++|..++....... .....|.++...+++. |-.|+.+
T Consensus 255 l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 255 ALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp -CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred ccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 2346799999988887554 5554558889987664322111 2346799999988876 5566767
Q ss_pred CcEEEEeCCcccchhcccccccceEE-------eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee-
Q 014475 144 GCVRIWSLLTVFEECESQRASHLYLH-------SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI- 215 (424)
Q Consensus 144 g~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~- 215 (424)
+-|..++..+.. ..... ........|.++....++ .|..|+.++-|..||..+++.....
T Consensus 333 ~Gl~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~ 400 (781)
T 3v9f_A 333 GGINFISNAPPT---------FHTWSYSPTQMNESSLSNKVVSSVCDDGQG---KLWIGTDGGGINVFENGKRVAIYNKE 400 (781)
T ss_dssp SCEEEECSSCCS---------CEEEC----CCCSSCCSSSCEEEEEECTTS---CEEEEEBSSCEEEEETTEEEEECC--
T ss_pred CeEEEeCCCCCc---------ceeeccCccccccCCCCCcceEEEEEcCCC---CEEEEeCCCcEEEEECCCCeEEEccC
Confidence 778889875421 11110 001123467777765554 4667776777999998765432211
Q ss_pred --e-cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcE
Q 014475 216 --V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMV 292 (424)
Q Consensus 216 --~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i 292 (424)
. ....|.++...+++. |.+|+.++.+..++..++.. ............|.++...+...|..|+. +-|
T Consensus 401 ~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl 471 (781)
T 3v9f_A 401 NRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF-------QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGV 471 (781)
T ss_dssp ---CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-------EECCSTTTCCCCEEEEEECTTSEEEEEET-TEE
T ss_pred CCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-------EEeccCCCCCCeEEEEEECCCCCEEEEEC-Cce
Confidence 1 235688888887776 55577767788888776421 11100012346788988887444555555 458
Q ss_pred EEEeCCCCcEEEEEecc-----CCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 293 RVWDPITHNIVRMFRLA-----KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 293 ~iwd~~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
..||..+++........ ...|.++...++|.+.+.. .++-+..++..+.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 472 FVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQ 525 (781)
T ss_dssp EEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCC
T ss_pred EEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCC
Confidence 89998876644333222 3578899888888765544 4334666776544
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=6.7e-06 Score=81.67 Aligned_cols=301 Identities=12% Similarity=0.070 Sum_probs=177.8
Q ss_pred ceEEEeCCCCceEEEeeCC----CCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-------------
Q 014475 14 GIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------------- 76 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~------------- 76 (424)
.+.+||..+++...-.... ......|.++. ..++|.+.+.. .. +-|.+++..+......
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~~-~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~ 306 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK--QLKDNKLWIAT-EL-NGIMILDLQQNQFLLPEQIRFEFIREGDN 306 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEE--ECTTSEEEEEE-SS-SCEEEEETTCC---------CEEECBCSS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEE--ECCCCCEEEEe-CC-CCeEEECCCCCeeeeeeccccccccCCCC
Confidence 5888887766543211111 11235577776 66777765544 32 5678888876553211
Q ss_pred --ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeec---------cccCCeEEEEEccCCcEEEEeeCCCc
Q 014475 77 --SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---------AHYRAVTCLVFSEDGSFLISGSEDGC 145 (424)
Q Consensus 77 --~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~s~~~dg~ 145 (424)
......|.++...++|. |..|+.++-|..++..++....... .....|.++...+++. |..|+.++-
T Consensus 307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G 384 (781)
T 3v9f_A 307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG 384 (781)
T ss_dssp TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence 12346799999999887 4556666678999876654322111 1235699999888776 555665667
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---cCccee
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVID 222 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~i~ 222 (424)
|..||..+..... ...........|.++...+++ .|..|+.++-+..+|..+++...... ....|.
T Consensus 385 l~~~~~~~~~~~~--------~~~~~~~~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 385 INVFENGKRVAIY--------NKENRELLSNSVLCSLKDSEG---NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR 453 (781)
T ss_dssp EEEEETTEEEEEC--------C-----CCCSBEEEEEECTTS---CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred EEEEECCCCeEEE--------ccCCCCCCCcceEEEEECCCC---CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence 8899985421100 000001234567777765554 46667777779999987765433221 235788
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCC
Q 014475 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~ 298 (424)
++...+++. +.+|+. +.+..+|..+... ....... .....|.++...+ +.+. .|+.++-|..||..
T Consensus 454 ~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 454 VFYEDKNKK-IWIGTH-AGVFVIDLASKKV-------IHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPD 523 (781)
T ss_dssp EEEECTTSE-EEEEET-TEEEEEESSSSSC-------CEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTT
T ss_pred EEEECCCCC-EEEEEC-CceEEEeCCCCeE-------EecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCC
Confidence 888888776 555555 5688999876531 1111111 1136788998888 5544 45443347789987
Q ss_pred CCcEEEEEec----cCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 299 THNIVRMFRL----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 299 ~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+++. ..+.. ....|.++...++|...++.. +|.+..|+..+.+
T Consensus 524 ~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 524 MQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 6543 33331 234688888888887665544 6665888876554
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=2.9e-06 Score=74.60 Aligned_cols=227 Identities=9% Similarity=0.002 Sum_probs=136.5
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeec--------------------CCCCeeEEEECC-CCCEEEEecCCCcE
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------------------PAEPIKPIAANS-HGTYIAGGGQSGDI 104 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--------------------~~~~v~~~~~s~-~~~~l~~~~~dg~v 104 (424)
+.++++++.++..+ +.|..|+..+++...... ....+..+++.+ +++++++ ...+.|
T Consensus 26 ~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i 103 (322)
T 2fp8_A 26 FDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYYHL 103 (322)
T ss_dssp CCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTTEE
T ss_pred EcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCCCE
Confidence 88888867776665 899999987665432211 013578999998 6665554 334458
Q ss_pred EEEEccCcceeeee---cc-ccCCeEEEEEcc-CCcEEEEeeC-----------------CCcEEEEeCCcccchhcccc
Q 014475 105 YMWEVASGRLLKKW---HA-HYRAVTCLVFSE-DGSFLISGSE-----------------DGCVRIWSLLTVFEECESQR 162 (424)
Q Consensus 105 ~iwd~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~ 162 (424)
..+|..++...... .+ .......+++.+ +|+..++-.. ++.|..+|..++.
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~------- 176 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE------- 176 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-------
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-------
Confidence 88887655422111 11 123578899999 8887666432 3678888875421
Q ss_pred cccceEEeecCCcCceeEEEEEEcCceeEEE-EEeCCCcEEEEecCCCc--eeeee-ecCcceeEEEECCCCCEEEEEeC
Q 014475 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGR--LLRNI-VFPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
...+.........+++++++ +.|+ +-+..+.|..|++.... ....+ ..+. ...++++++|+++++...
T Consensus 177 -----~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 -----TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -----EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred -----EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 11111111234568898887 5554 44566889999987531 11112 2334 788999999986666544
Q ss_pred ----------CCcEEEEEcCCCCCCCCCcCceeeeeeccc----CcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475 239 ----------DGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 239 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~ 299 (424)
.+.|..+|... +.+..+... ...++.+++..+.++++...++.|..+++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 35677777643 223333222 2346666664466666666788899998763
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=1e-06 Score=83.71 Aligned_cols=288 Identities=10% Similarity=-0.004 Sum_probs=161.2
Q ss_pred ccccCCC-CceeEEEEEC-CCCceeeeecCCCC------------eeEEEECCCCCE----EEEecCCCcEEEEEccCcc
Q 014475 52 LREQPSA-SSGSILYWSW-SKPQVEVKSLPAEP------------IKPIAANSHGTY----IAGGGQSGDIYMWEVASGR 113 (424)
Q Consensus 52 ~l~~~~~-~~g~i~vwd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~----l~~~~~dg~v~iwd~~~~~ 113 (424)
.+.+++. + +.|.-+|. .+++...+...... ...++++|.+.. +++++.|+.|..+|.++|+
T Consensus 64 ~vyv~~~~~-~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 64 KMYIHTSFP-NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp EEEEECSTT-TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCC-CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 3444444 4 88999999 88888776554321 123455443333 7778889999999999999
Q ss_pred eeeeecccc----CCeEE-EEEccCCcEEEEee------CCCcEEEEeCCcccchhcccccccceE--------------
Q 014475 114 LLKKWHAHY----RAVTC-LVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYL-------------- 168 (424)
Q Consensus 114 ~~~~~~~~~----~~i~~-~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------- 168 (424)
.+....... ..+.+ -... ++ .+++++ .+|.|+.+|.+++...-..........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 887654221 01111 1111 44 455544 378999999988654322211110000
Q ss_pred -------Ee-----ecCCcCce-eEEEEEEcCceeEEEEEeCC----------------CcEEEEecCCCceeeeeecCc
Q 014475 169 -------HS-----FTGHTLRI-TDIVIGYGGVSATIVSASED----------------RTCKVWSLLKGRLLRNIVFPS 219 (424)
Q Consensus 169 -------~~-----~~~~~~~i-~~~~~~~~~~~~~l~~~~~d----------------~~v~iwd~~~~~~~~~~~~~~ 219 (424)
.. +..-...+ ..+++.+.. ..++.++.+ +.|.-+|.++++.+..++...
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 00 00000001 123444444 566666544 379999999999988877321
Q ss_pred ----------ceeEEEEC-CCC---CEEEEEeCCCcEEEEEcCCCCCCCCCcC--------------ceeeee-------
Q 014475 220 ----------VIDAIALD-PAE---HVFYAGSRDGSIYIAALNAESPSTSSYG--------------MHIIGS------- 264 (424)
Q Consensus 220 ----------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~~~~~------- 264 (424)
...-+... .+| ..++.++.+|.++++|..+++....... ..++..
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~ 378 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM 378 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCT
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCC
Confidence 11112222 456 5677789999999999988754211000 000000
Q ss_pred -------eccc--CcCeEEEEecC-CCEEEEe---------------------------------C------CCCcEEEE
Q 014475 265 -------LSDH--SKAVTCLAYST-GDLLISG---------------------------------S------EDGMVRVW 295 (424)
Q Consensus 265 -------~~~~--~~~i~~~~~~~-~~~l~t~---------------------------------~------~dg~i~iw 295 (424)
..+. ...-..++++| ..++++. + .+|.|.-|
T Consensus 379 ~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 379 DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 0000 00001234444 3332221 1 45789999
Q ss_pred eCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
|+.+++.+-+... ..+...-.....+..++.++.|+.++.+|..+++..
T Consensus 459 D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 459 NAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 9999999887763 233333234446667777999999999999988764
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=6.3e-07 Score=74.35 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=127.2
Q ss_pred ceeeeeccccC--CeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 113 ~~~~~~~~~~~--~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
+.+.++ .|.. ....+.|+ ++.++++.+.+|.|+.+|++++... ... +.. .....-....++ .
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~---------~~~-l~~---~~FgeGit~~g~-~ 107 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV---------WME-RLG---NIFAEGLASDGE-R 107 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS---------EEE-ECT---TCCEEEEEECSS-C
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE---------eEE-CCC---CcceeEEEEeCC-E
Confidence 344555 3443 34788887 4677788888999999999874321 111 222 222222333442 4
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--c
Q 014475 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--H 268 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~ 268 (424)
..+..-.++.+.+||..+.+.+..+..+..-..++ ++++.|+.+..++.|+++|..+.+ .+..+.- +
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---------v~~~I~V~~~ 176 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---------LVGAVQVKLR 176 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC---------EEEEEECEET
T ss_pred EEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---------EEEEEEeCCC
Confidence 55556678999999999999999998654444444 578888888888899999988863 2333221 2
Q ss_pred C---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------------CCCeeEEEEEecCceeeec
Q 014475 269 S---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 269 ~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~ 328 (424)
. ..++.+.|..+..++..-.+..|.+.|.++++.+..+... ....+.++++|+++.|.+.
T Consensus 177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 2 2456677776766666657889999999999999988742 1356889999987655544
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=3.7e-06 Score=69.17 Aligned_cols=190 Identities=17% Similarity=0.120 Sum_probs=125.9
Q ss_pred eeeeecccc--CCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 114 LLKKWHAHY--RAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 114 ~~~~~~~~~--~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
.+.++ .|. .....+.|++ +.++.+.+.+| .|+.+|+.++.. +....-.. ..........++
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-----------~~~~~l~~-~~fgeGi~~~~~- 75 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-----------LQRAEVPP-PYFGAGIVAWRD- 75 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-----------EEEEECCT-TCCEEEEEEETT-
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-----------EEEEeCCC-CcceeEEEEeCC-
Confidence 44455 354 3466899986 66667777654 899999977432 22222111 122222233332
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecc--
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-- 267 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 267 (424)
......-.++.+.+||..+.+.+.++..+..-..++ +++..|+++..++.|.++|..+.. .+..+.-
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---------~~~~I~V~~ 144 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---------QVGSIKVTA 144 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC---------EEEEEECEE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe---------EEEEEEEcc
Confidence 555566678999999999999999998665445555 467778877778899999998863 2333322
Q ss_pred cC---cCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEecc-------------CCCeeEEEEEecCceeeecc
Q 014475 268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 268 ~~---~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~~ 329 (424)
+. ..++.+.+..+..++..-.+..|.+.|.++++.+..+... ....+.++++|+++.|.+.+
T Consensus 145 ~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 145 GGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 21 3456677766666666657889999999999999988732 12568899999876665543
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.87 E-value=5.1e-06 Score=74.92 Aligned_cols=239 Identities=8% Similarity=-0.097 Sum_probs=151.1
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcEEE
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI 138 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~ 138 (424)
..|+..++..............+..++|++.+. ++++-...+.|..+++..+.....+.........+++.+. +.+++
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~ 175 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 175 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence 578888887766555545556789999997554 4455556788999998766544433333345677888874 45555
Q ss_pred EeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceeeeee-
Q 014475 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV- 216 (424)
Q Consensus 139 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~- 216 (424)
+-...+.|.+.++... ...............+++.|.+. .++++-... +.|..+++..........
T Consensus 176 ~d~~~~~I~~~~~dg~-----------~~~~l~~~~l~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 176 TDSGTSRIEVANLDGA-----------HRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EETTTTEEEECBTTSC-----------SCEEEECSSCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EcCCCCeEEEEeCCCC-----------ceEEeecCCCCCCcEEEEEcCCC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 5556678888887531 11111223334568889987652 444444444 678888876443322222
Q ss_pred cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEE
Q 014475 217 FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295 (424)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iw 295 (424)
.-...+.++++|++..|+.+ ...+.|..+|++... ..............+++..+.++++-...+.|..+
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---------~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---------RKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---------CEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---------eEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEE
Confidence 23457899999876666655 456789899887532 11112222345677777557777777788899999
Q ss_pred eCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 296 DPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
+..+++.+..+.........+++..
T Consensus 315 ~~~~G~~~~~i~~~~~~p~gi~v~~ 339 (386)
T 3v65_B 315 NKFTGKNQEIIRNKLHFPMDIHTLH 339 (386)
T ss_dssp ETTTCCSCEEEECSCSCCCCEEEES
T ss_pred ECCCCcceEEEccCCCCCceEEEEc
Confidence 9888887777765444555665543
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.86 E-value=1.8e-05 Score=71.60 Aligned_cols=241 Identities=10% Similarity=-0.038 Sum_probs=152.1
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEcc-CC
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DG 134 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~-~~ 134 (424)
..|+..+++.............+..++|++.+..| ++-...+.|+.+++... .....+.........+++.+ .+
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 67888888877665555556788999999855544 44455678999988652 22233333445678899987 55
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC-CCcEEEEecCCCceee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR 213 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~ 213 (424)
+++++-...+.|.+.+++... ....+...-.....+++.|.+. .++++-.. .+.|...++.......
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~-----------~~~l~~~~~~~P~~iavdp~~g-~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCS-----------EEEEEECSSCCEEEEEEETTTT-EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ceEEEECCCCeEEEEeCCCCc-----------eEEEEeCCCCCcceEEEecccC-eEEEEeCCCCCEEEEEeCCCCccEE
Confidence 556666667889999885411 1111222334567899988652 34444322 4788888886443333
Q ss_pred eee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc
Q 014475 214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM 291 (424)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~ 291 (424)
... .-...+.++++|++..|+.+. ..+.|..+|++.... ..+............+++..+.++++-...+.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 312 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEETTEEEEEESSSCS
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCe
Confidence 222 225678999998777776664 467899999876431 22222112234456777755777777778889
Q ss_pred EEEEeCCCCcEEEEEeccCCCeeEEEEEe
Q 014475 292 VRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (424)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (424)
|..+|..+|+.+..+.........+....
T Consensus 313 V~~~~~~~G~~~~~i~~~~~~p~~i~v~~ 341 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENLLSPEDMVLFH 341 (400)
T ss_dssp EEEEESSSCCCCEEEECSCSCEEEEEEES
T ss_pred EEEEEcCCCCceEEEecCCCCCceEEEEe
Confidence 99999888888877765444555665543
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=1e-05 Score=70.42 Aligned_cols=234 Identities=13% Similarity=0.052 Sum_probs=133.6
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--CcEEEEEccCcceee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--GDIYMWEVASGRLLK 116 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~v~iwd~~~~~~~~ 116 (424)
...++ +.++++++++.... +.|..||.+.... ........+..+++.++|+++++.... ..|..+|..+++...
T Consensus 34 pegia--~~~~g~lyv~d~~~-~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 34 LENLA--SAPDGTIFVTNHEV-GEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp EEEEE--ECTTSCEEEEETTT-TEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cceEE--ECCCCCEEEEeCCC-CeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45556 88998866665555 8999999876432 223334678999999999966654332 247777777776533
Q ss_pred eec-cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEE
Q 014475 117 KWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (424)
Q Consensus 117 ~~~-~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 195 (424)
... ........++..+++..+++-..++.|..+|..++............ .......-...+.+ ++++. ..+++-
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~-~~~~~~~~~~pngi--s~dg~-~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RSNSESVFPAANGL--KRFGN-FLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CSSTTCCSCSEEEE--EEETT-EEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc-cccccCCCCcCCCc--CcCCC-EEEEEe
Confidence 222 12233455665555555555556888999987542100000000000 00000111233444 67662 455555
Q ss_pred eCCCcEEEEecCC-Cce--eeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 196 SEDRTCKVWSLLK-GRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 196 ~~d~~v~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
...+.|..+|+.. ++. ...+........++++++|+++++....+.|.++|..... ..+..........
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~--------~~~~~~~~~~~~p 257 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGS 257 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCE--------EEEeecccccCCc
Confidence 6678999999874 332 1222222356778999999877776677899999875321 1122233333568
Q ss_pred EEEEec---C-CCEEEEeCC
Q 014475 273 TCLAYS---T-GDLLISGSE 288 (424)
Q Consensus 273 ~~~~~~---~-~~~l~t~~~ 288 (424)
++++|. | ++.|+.++.
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEECCSTTTTTEEEEEEC
T ss_pred eEEEEecccCCCCEEEEECC
Confidence 899997 6 555554443
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.83 E-value=4.1e-06 Score=73.04 Aligned_cols=227 Identities=9% Similarity=0.012 Sum_probs=134.5
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCC--cEEEEeCCcccchh
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC 158 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~ 158 (424)
.....++|+++++++++-..++.|..||.... ....+. ....+..+++.++++++++..... .|..+|..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence 56789999999997777767889999997653 333332 234688999999998666554332 36666764421
Q ss_pred cccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-eeee-------e---cCcceeEEEEC
Q 014475 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-------V---FPSVIDAIALD 227 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-------~---~~~~i~~~~~~ 227 (424)
...+.... .......++..+.+ ..+++-..++.|..+|..+++. +... . .-...+.+ +
T Consensus 107 ------~~~~~~~~-~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 107 ------VETLLTLP-DAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp ------EEEEEECT-TCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred ------EEEEEeCC-CccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 11111111 11222334433332 4445544688899999765421 1100 0 11123444 7
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEE-
Q 014475 228 PAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR- 304 (424)
Q Consensus 228 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~- 304 (424)
|+++.|+++. ..+.|..+++....... ........ .....+++++ ++++++....+.|.++|.. ++...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 7887666654 56789999987521100 01111111 3456688888 8887777778899999975 66533
Q ss_pred -EEeccCCCeeEEEEE---ecCceeeeccCC
Q 014475 305 -MFRLAKGPVNNILVV---RRPLYLNLGSFS 331 (424)
Q Consensus 305 -~~~~~~~~v~~l~~s---~~~~~l~~~~~d 331 (424)
.+.......++++|. |++..|..++..
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eecccccCCceEEEEecccCCCCEEEEECCC
Confidence 333333567899998 887777665443
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.83 E-value=2.4e-06 Score=81.18 Aligned_cols=289 Identities=13% Similarity=0.034 Sum_probs=161.4
Q ss_pred CCCccccCCCCceeEEEEECCCCceeeeecCCCCe----------eEEEECCCCCEEEEecCCCcEEEEEccCcceeeee
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI----------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 118 (424)
++..++.+..+ + |.-+|..+++...+.....+. ..+++ .+..+++++.++.|.-+|.++|+.+...
T Consensus 68 ~g~vyv~~~~~-~-v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYS-R-LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTT-E-EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCC-C-EEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 44444443333 4 888999988887665433221 11222 3456777888999999999999988765
Q ss_pred ccccC----CeE-EEEEcc---CCc-EEEEee------CCCcEEEEeCCcccchhcccccccceEE-------ee-----
Q 014475 119 HAHYR----AVT-CLVFSE---DGS-FLISGS------EDGCVRIWSLLTVFEECESQRASHLYLH-------SF----- 171 (424)
Q Consensus 119 ~~~~~----~i~-~~~~~~---~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~----- 171 (424)
+.... .+. .-.... +++ .+++++ .+|.|..+|.+++........... .+. ..
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~-~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEG-HMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTT-CEEEETTEEEEESSCTT
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcc-ccccccCcccccccccc
Confidence 43210 111 111111 222 555554 378999999988654432211100 000 00
Q ss_pred ----c---------------CCcCceeEEEEEEcCceeEEEEEeC--------------------C----CcEEEEecCC
Q 014475 172 ----T---------------GHTLRITDIVIGYGGVSATIVSASE--------------------D----RTCKVWSLLK 208 (424)
Q Consensus 172 ----~---------------~~~~~i~~~~~~~~~~~~~l~~~~~--------------------d----~~v~iwd~~~ 208 (424)
. +....-..+++.+.. ..++.+.. | +.|.-+|.++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~--g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET--NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT--TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCC--CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 0 000011234555554 45555442 2 5899999999
Q ss_pred CceeeeeecCc----------ceeEEEEC-CCCC---EEEEEeCCCcEEEEEcCCCCCCCCCcCc--------------e
Q 014475 209 GRLLRNIVFPS----------VIDAIALD-PAEH---VFYAGSRDGSIYIAALNAESPSTSSYGM--------------H 260 (424)
Q Consensus 209 ~~~~~~~~~~~----------~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~ 260 (424)
++.+..++... ...-+... .+|+ .++.++.+|.++++|..+++........ +
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 99998876321 11111221 4563 7888999999999999887542110000 0
Q ss_pred eee--------------------eecccC--cCeEEEEecC-CCEEEEe-------------------------------
Q 014475 261 IIG--------------------SLSDHS--KAVTCLAYST-GDLLISG------------------------------- 286 (424)
Q Consensus 261 ~~~--------------------~~~~~~--~~i~~~~~~~-~~~l~t~------------------------------- 286 (424)
++. ...+.. ..-..++++| ..++++.
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 000 000000 0001345555 3333332
Q ss_pred --CCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCCCC
Q 014475 287 --SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 287 --~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
..+|.|.-||+.+++.+-+.... .++..-.....+..++.++.|+.++.+|.++++..
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 13688999999999998877643 33433334445667888999999999999988754
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.80 E-value=1.5e-06 Score=72.18 Aligned_cols=176 Identities=11% Similarity=0.059 Sum_probs=117.7
Q ss_pred EEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeE--EEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
..+. |+ ++.+.++++.+ |.|+++|+++++..... ....... +++..+ +..++.-.++.+.+||.++.+.+.+
T Consensus 58 qGL~--~~-~~~Ly~stG~~-g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 58 QGLV--FH-QGHFFESTGHQ-GTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEE--EE-TTEEEEEETTT-TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ceEE--EE-CCEEEEEcCCC-CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEE
Confidence 4444 65 35555566665 88999999999877655 4344433 555433 3444455688999999999999988
Q ss_pred eccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeec--CCc---CceeEEEEEEcCceeEE
Q 014475 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHT---LRITDIVIGYGGVSATI 192 (424)
Q Consensus 118 ~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~~~~~l 192 (424)
+... ..-..++ ++++.|+.+..++.|.++|..+... +..+. .+. ..++.+.|. ++ ...
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-----------~~~I~V~~~g~~v~~lNeLe~~-dG--~ly 194 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-----------VGAVQVKLRGQPVELINELECA-NG--VIY 194 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE-----------EEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE-----------EEEEEeCCCCcccccccccEEe-CC--EEE
Confidence 8743 2223444 4577777777788999999976322 22221 122 234566665 54 555
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecC--------------cceeEEEECCCCCEEEEEeC
Q 014475 193 VSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 193 ~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~ 238 (424)
+....++.|.+.|.++++.+..+... ...+.++++|+++.|++.+.
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 55557889999999999998888732 35689999997766666553
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=3.4e-07 Score=88.92 Aligned_cols=253 Identities=11% Similarity=0.018 Sum_probs=138.8
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-C-CCCeeEEEECCC
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-AEPIKPIAANSH 91 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~-~~~v~~~~~s~~ 91 (424)
.+.+||..+++..........+.......+ +.++++.++++|.+++.+.+||..+.+...... + ...-.++...++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence 588999988764321111111111122233 678999999999766799999988765432211 1 112235566679
Q ss_pred CCEEEEec-CC-----CcEEEEEccCcceeeee----ccccCCeEEEEEccCCcEEEEeeCCC---------cEEEEeCC
Q 014475 92 GTYIAGGG-QS-----GDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDG---------CVRIWSLL 152 (424)
Q Consensus 92 ~~~l~~~~-~d-----g~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~s~~~dg---------~i~iwd~~ 152 (424)
+++++.|+ .+ ..+.+||..+++-...- ......-....+..++..++.++.+| .+..||..
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 99999998 34 46999999876533210 00000000011223445555554444 46677775
Q ss_pred cccchhcccccccceEEeecCCc---------CceeEEEEEE-cCceeEEEEEeCCC-----------cEEEEecCCCce
Q 014475 153 TVFEECESQRASHLYLHSFTGHT---------LRITDIVIGY-GGVSATIVSASEDR-----------TCKVWSLLKGRL 211 (424)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~~~l~~~~~d~-----------~v~iwd~~~~~~ 211 (424)
+..- ......+. ..-.++.+.. ++ ++++.|+.++ .+.+||..+.+-
T Consensus 378 ~~~w-----------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 444 (656)
T 1k3i_A 378 GSGD-----------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKG--KILTFGGSPDYQDSDATTNAHIITLGEPGTSPN 444 (656)
T ss_dssp TTCE-----------EEEEEECEETTEECCCCBTCEEEEEETTTT--EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE
T ss_pred Ccce-----------eecCCccccccccCCCCCCCceEeccCCCC--eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe
Confidence 5210 11111111 1112333322 33 7888887543 678888877654
Q ss_pred eeee----ecCcceeEEEECCCCCEEEEEeCC-----------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475 212 LRNI----VFPSVIDAIALDPAEHVFYAGSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (424)
Q Consensus 212 ~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (424)
.... ..+..-.+++..|++++++.|+.+ ..+.+||..+.. +..+..+........+..
T Consensus 445 ~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------W~~~~~~~~~R~~hs~a~ 517 (656)
T 1k3i_A 445 TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------FYKQNPNSIVRVYHSISL 517 (656)
T ss_dssp EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------EEECCCCSSCCCTTEEEE
T ss_pred eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------eeecCCCCCccccccHhh
Confidence 4332 223334566778899999998754 468999987753 233332222222233344
Q ss_pred ecC-CCEEEEeCC
Q 014475 277 YST-GDLLISGSE 288 (424)
Q Consensus 277 ~~~-~~~l~t~~~ 288 (424)
+.| +++++.|+.
T Consensus 518 ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 518 LLPDGRVFNGGGG 530 (656)
T ss_dssp ECTTSCEEEEECC
T ss_pred cCCCcEEEecCCC
Confidence 556 889999885
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.73 E-value=7.3e-06 Score=67.43 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=124.0
Q ss_pred ceEEEeeCCCCCCCceEEecceeecCCCccccCCCC-ceeEEEEECCCCceeeeecCCCCeeEEEECCCCC-EEEEecCC
Q 014475 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQS 101 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~-~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d 101 (424)
+.+.++ .|. ...-..-+. |+. +.+..+++.. ...|+.+|+.+++.................+.++ .....-.+
T Consensus 10 ~v~~~~-phd-~~~ftqGL~--~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHD-TTAFTEGLF--YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECC-TTCCEEEEE--EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEEc-CCC-CccccccEE--EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC
Confidence 344555 342 223344555 776 5555665553 2589999999998876655444443333333334 44445568
Q ss_pred CcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC--Cc---C
Q 014475 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---L 176 (424)
Q Consensus 102 g~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~ 176 (424)
+.+.+||.++.+.+.++.... .-..++ ++++.|+.+..++.|.++|..+... +..+.- +. .
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~-----------~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ-----------VGSIKVTAGGRPLD 150 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCE-----------EEEEECEETTEECC
T ss_pred CEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeE-----------EEEEEEccCCcccc
Confidence 899999999999999887433 224454 4566666666688999999976321 222221 22 2
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC--------------cceeEEEECCCCCEEEEEeCC
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d 239 (424)
.++.+.+. ++ ...+..-.+..|.+.|.++++.+..+... ...+.++++|+++.|++.+..
T Consensus 151 ~lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 151 NLNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CEEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred cceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 34455554 44 55555556889999999999998888622 256899999987777766643
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.70 E-value=3.4e-05 Score=67.39 Aligned_cols=236 Identities=10% Similarity=-0.043 Sum_probs=146.9
Q ss_pred eeEEEEECCCCc--eeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCccee-eeeccccCCeEEEEEcc-CCc
Q 014475 61 GSILYWSWSKPQ--VEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSE-DGS 135 (424)
Q Consensus 61 g~i~vwd~~~~~--~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~ 135 (424)
..|+..+++... ..........+.+++|++. +.++.+-...+.|..+++..+... ..+.........+++.+ .++
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ 92 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK 92 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence 789999998763 2222222345778999985 555555566788999998766422 22222334567899987 455
Q ss_pred EEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceee
Q 014475 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLR 213 (424)
Q Consensus 136 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~ 213 (424)
++++-...+.|.++++.... . .............+++.|.+ ..|+.+. ..+.|...++.... ..
T Consensus 93 ly~~d~~~~~I~~~~~dG~~---------~--~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG~~-~~ 158 (318)
T 3sov_A 93 LYWTDSETNRIEVSNLDGSL---------R--KVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDGSS-RF 158 (318)
T ss_dssp EEEEETTTTEEEEEETTSCS---------C--EEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTSCS-CE
T ss_pred EEEEECCCCEEEEEECCCCc---------E--EEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCCCC-eE
Confidence 55665667789999985411 1 11122333456788998765 3444444 35788888876433 22
Q ss_pred eee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475 214 NIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 214 ~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
.+. .-...+.++++|++..|+.+ +..+.|..+|++.... +.+ ..+.......+++..+.++++-...+
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~--~~~~~~~P~glav~~~~lywtd~~~~ 229 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV--VKGSLPHPFALTLFEDILYWTDWSTH 229 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE--ECSCCSCEEEEEEETTEEEEEETTTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE--ecCCCCCceEEEEeCCEEEEEecCCC
Confidence 322 22456899999976666655 4567899999875321 111 12233456677776677777777788
Q ss_pred cEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 291 MVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
.|..++..+++....+.........++..
T Consensus 230 ~V~~~~~~~G~~~~~i~~~~~~P~~i~v~ 258 (318)
T 3sov_A 230 SILACNKYTGEGLREIHSDIFSPMDIHAF 258 (318)
T ss_dssp EEEEEETTTCCSCEEEECCCSSCCCEEEE
T ss_pred eEEEEECCCCCceEEEeCCCCCCcEEEEe
Confidence 99999998888777766443344455544
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.68 E-value=0.0001 Score=64.35 Aligned_cols=218 Identities=9% Similarity=-0.019 Sum_probs=131.8
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC----Cceeeee-cCCCCeeEEE
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA 87 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~-~~~~~v~~~~ 87 (424)
..|+..|+.+++....+.. ......++ |.+.++.+..+...++.|..++.++ ....... ........++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~----~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp SSEEEEETTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred CeEEEEECCCcceEehhcC----CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 5799999998776655432 23456666 9887766666554448999999876 2222211 2224568899
Q ss_pred ECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-C-CcEEEEeCCcccchhcccccc
Q 014475 88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 88 ~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~ 164 (424)
+.+. +++.++-...+.|.+.++........+.........+++.|.+..|+.+.. . +.|...++... .
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---------~ 154 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------D 154 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------C
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---------C
Confidence 9874 455555566788999998654333333334456889999986555554443 2 67888887431 1
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-c---CcceeEEEECCCCCEEEEEeCCC
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDPAEHVFYAGSRDG 240 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~~~dg 240 (424)
. .......-.....+++++++. .+.++-+..+.|..+|+.... ...+. . ......+++. .+.++++-...+
T Consensus 155 ~--~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 155 I--YSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp E--EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred e--EEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 1 111112234567899997662 445555566789999987433 23222 1 2345667774 355555556677
Q ss_pred cEEEEEcCCC
Q 014475 241 SIYIAALNAE 250 (424)
Q Consensus 241 ~i~i~d~~~~ 250 (424)
.|..++..++
T Consensus 230 ~V~~~~~~~g 239 (316)
T 1ijq_A 230 AIFSANRLTG 239 (316)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEeCCCC
Confidence 8888887654
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.64 E-value=3e-05 Score=64.70 Aligned_cols=200 Identities=11% Similarity=0.123 Sum_probs=131.4
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec--CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 114 (424)
..+..++ +.|++..|.+....++.|...|.+ ++...... -......+++.+++.++++.-.++.+.++++.....
T Consensus 27 ~~lSGla--~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 27 NNISSLT--WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp SCEEEEE--EETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred cCcceeE--EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 4577777 999877777655555999999998 55443332 235788999999998777766678899998865442
Q ss_pred e---eeec------cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe----ecCCcCceeEE
Q 014475 115 L---KKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDI 181 (424)
Q Consensus 115 ~---~~~~------~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ 181 (424)
+ .... ........++|+|.++.|.++.......+|.+...... ........ -..+...+.++
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-----~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-----NELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-----SCCEEEECHHHHHTCCSSCCCEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-----CceeeecchhhccccccCCceeE
Confidence 1 2211 23455789999998877777776656666666410000 00000000 01133457889
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecC----------cceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----------SVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (424)
+++|... .+++.+..++.+..+|.. ++.+..+... .....+++.++|++ ++.+..+.++.+.-
T Consensus 179 ~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred EEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 9998764 677777788899999965 6666666633 26789999999984 44566666666643
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.62 E-value=2e-06 Score=83.51 Aligned_cols=242 Identities=10% Similarity=0.067 Sum_probs=136.0
Q ss_pred eEEEECC-CCCEEEEecCCC-----------cEEEEEccCcceee--eec-cccCCeEEEEEccCCcEEEEeeC-CCcEE
Q 014475 84 KPIAANS-HGTYIAGGGQSG-----------DIYMWEVASGRLLK--KWH-AHYRAVTCLVFSEDGSFLISGSE-DGCVR 147 (424)
Q Consensus 84 ~~~~~s~-~~~~l~~~~~dg-----------~v~iwd~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~-dg~i~ 147 (424)
.++++.| ++++++.|+.+. .+.+||+.+++... .+. .+.....++++.++++.++.|+. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3566777 888888887543 58899998875432 222 13333445778889999999984 45799
Q ss_pred EEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CC-----CcEEEEecCCCceeeee-----e
Q 014475 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-----RTCKVWSLLKGRLLRNI-----V 216 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-----~~v~iwd~~~~~~~~~~-----~ 216 (424)
+||..+. ....+..+.... .-.+++..+++ +.++.|+ .+ ..+.+||..+.+-...- .
T Consensus 269 ~yd~~t~---------~W~~~~~~~~~R-~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p 336 (656)
T 1k3i_A 269 LYDSSSD---------SWIPGPDMQVAR-GYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 336 (656)
T ss_dssp EEEGGGT---------EEEECCCCSSCC-SSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred EecCcCC---------ceeECCCCCccc-cccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence 9998652 111111111111 11233344455 7888887 34 56999999876533220 0
Q ss_pred cCcceeEEEECCCCCEEEEEeCCC---------cEEEEEcCCCCCCCCCcCceeeeeecc------cCcCeEEEEecC--
Q 014475 217 FPSVIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-- 279 (424)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~-- 279 (424)
....-....+..++..++.|+.+| .+..||....... ........ ....-.++.+..
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~------~~~~~~~~~~~~~~~~~~~~av~~~~~~ 410 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV------KSAGKRQSNRGVAPDAMCGNAVMYDAVK 410 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE------EEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee------ecCCccccccccCCCCCCCceEeccCCC
Confidence 000000112334566666665554 4567887765310 11111100 011234444443
Q ss_pred CCEEEEeCCCC-----------cEEEEeCCCCcEEEEE--eccCCCe-eEEEEEecCceeeeccCC-----------Cce
Q 014475 280 GDLLISGSEDG-----------MVRVWDPITHNIVRMF--RLAKGPV-NNILVVRRPLYLNLGSFS-----------NPH 334 (424)
Q Consensus 280 ~~~l~t~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~~~~~d-----------~~i 334 (424)
+++++.|+.++ .|.+||..+.+-.... ..+.... .+++..|+++.++.|+.+ ..+
T Consensus 411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v 490 (656)
T 1k3i_A 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490 (656)
T ss_dssp TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence 77888887543 6888998876644433 2233332 344666899999999865 457
Q ss_pred eeccCCCCC
Q 014475 335 TSSRRHGSQ 343 (424)
Q Consensus 335 ~iw~~~~~~ 343 (424)
.+||..+.+
T Consensus 491 ~~ydp~t~~ 499 (656)
T 1k3i_A 491 EIYVPEQDT 499 (656)
T ss_dssp EEEEGGGTE
T ss_pred EEEcCCCCc
Confidence 888876543
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.00021 Score=63.36 Aligned_cols=237 Identities=10% Similarity=-0.061 Sum_probs=141.0
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccchhcc
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
...|.+..+++ +|+.+. ...|+..++........+. ....+..++|++.++.| ++-...+.|..+++....
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~----- 106 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----- 106 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-----
Confidence 34555656644 444433 3458888876654443333 34458899999755554 454567789999885421
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe-C
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS-R 238 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~ 238 (424)
..............+++.+.+. .+.++-...+.|.+.++........+. .......++++|.+..++... .
T Consensus 107 ------~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 107 ------VEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS
T ss_pred ------ceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC
Confidence 1111222223456788886542 566666667889999987544333332 235678999999666555544 4
Q ss_pred C-CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeE
Q 014475 239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (424)
Q Consensus 239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (424)
. +.|..++++.... .......-...+.++++| +. ++++-...+.|..+|+........+......-..
T Consensus 180 ~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g 250 (349)
T 3v64_C 180 NTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA 250 (349)
T ss_dssp SSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceE
Confidence 4 7788888876421 111112334578999997 44 5555556788999998743333333333345577
Q ss_pred EEEEecCceeeeccCCCceeeccCCCCC
Q 014475 316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 316 l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
+++ ..+....+-...+.|...+..+++
T Consensus 251 iav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 251 ITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 787 345555665666777777754443
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.60 E-value=0.00019 Score=64.57 Aligned_cols=237 Identities=10% Similarity=-0.074 Sum_probs=143.0
Q ss_pred eeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhccc
Q 014475 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 83 v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
-.|.+..+.+ +|+.+.. ..|+..++.......... ....+..++|++.++. +++-...+.|..+++....
T Consensus 79 ~~C~~~~~~~-~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------ 149 (386)
T 3v65_B 79 RSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------ 149 (386)
T ss_dssp SCEEECSSCC-EEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------
T ss_pred CeECCccccc-eeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------
Confidence 3455555533 4444433 568888887665444443 3456889999975544 4555567789999985421
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEe-CC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS-RD 239 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~d 239 (424)
..............+++.+.+. .++++-...+.|.+.++........+. .......++++|.+..|+... ..
T Consensus 150 -----~~~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~ 223 (386)
T 3v65_B 150 -----VEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 223 (386)
T ss_dssp -----EEEEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS
T ss_pred -----cEEEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC
Confidence 1111222223456788886542 566666667889999886544333333 235678999999776666554 33
Q ss_pred -CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEE
Q 014475 240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (424)
Q Consensus 240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (424)
+.|..++++... ........-...+.++++| +.++++-...+.|..+|+........+.........+
T Consensus 224 ~~~I~r~~~dG~~---------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi 294 (386)
T 3v65_B 224 TPRIEASSMDGSG---------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 294 (386)
T ss_dssp SCEEEEEETTSCS---------CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred CCEEEEEeCCCCC---------cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence 678888877642 1111122334578999997 5555565677889999987443333333333455778
Q ss_pred EEEecCceeeeccCCCceeeccCCCCCC
Q 014475 317 LVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 317 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
++ ..+..+.+-...+.|..++..+++.
T Consensus 295 av-~~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 295 TV-FEDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp EE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence 88 4455556666777788777544443
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=1.2e-05 Score=79.29 Aligned_cols=195 Identities=12% Similarity=0.010 Sum_probs=110.9
Q ss_pred ceEEecceee-cCCCccccCCCC----ceeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEecCC-----CcEEE
Q 014475 38 GLACVGQRFL-ASSQLREQPSAS----SGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM 106 (424)
Q Consensus 38 ~v~~~~~~~~-~~~~~l~~~~~~----~g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~v~i 106 (424)
.+.... |+ |||+++|.+... ...|+++|+.++ +...... ......++|+|||+.|+....+ ..|++
T Consensus 175 ~~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 455566 99 999998855332 246999999987 5321111 1124578899999988877654 25888
Q ss_pred EEccCccee--eeec-cccCCeEEEEEccCCcEEEEeeC---CCcEEEEeCCcccchhcccccccce--EEeecCCcCce
Q 014475 107 WEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLY--LHSFTGHTLRI 178 (424)
Q Consensus 107 wd~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 178 (424)
+++.++... ..+. ........+.|+||+++|+..+. ...|.++|+.++. ... ...........
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~---------~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN---------AHNTLEIVRPREKGVR 322 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT---------TCCCEEESSCCCTTCC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC---------CCceeEEeecCCCCce
Confidence 888776422 2222 22345678899999998886653 3468888886521 011 11112233344
Q ss_pred eEEEEEEcCceeEEEEEeCC----CcEEEEecCCC-ceee-eeecCc--ceeEEEECCCCCEEEEEeCCCc--EEEEEc
Q 014475 179 TDIVIGYGGVSATIVSASED----RTCKVWSLLKG-RLLR-NIVFPS--VIDAIALDPAEHVFYAGSRDGS--IYIAAL 247 (424)
Q Consensus 179 ~~~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~-~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~ 247 (424)
.++.|.. +. .+++.+..+ ..|..+|+.++ +... .+.+.. .+..+.+. .+.++++...++. |+++++
T Consensus 323 ~s~~~~~-g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHG-TS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEET-TT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeee-CC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4444333 32 444444443 25666777642 2222 233332 45556665 3445556666775 455554
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=3.3e-05 Score=70.61 Aligned_cols=240 Identities=7% Similarity=0.011 Sum_probs=137.3
Q ss_pred CeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CC----cEEEEeCCccc
Q 014475 82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG----CVRIWSLLTVF 155 (424)
Q Consensus 82 ~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~ 155 (424)
....++++| ++..|.++...+.|+.+|+..+...... ........++|++++++|+++.. ++ .+...+....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~- 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG- 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-
Confidence 567889998 4555666555578999998776544333 34566889999999996665554 22 2333443210
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeeeec--CcceeEEEECCCCCE
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHV 232 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~ 232 (424)
......+. .......++++| ++ .++++-..++.|..++...+........ ......++++|++++
T Consensus 216 ---------~~~~~~l~-~~~~p~giavdp~~g--~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 216 ---------FKVITELT-KGQNCNGAETHPING--ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp ---------SCSEEEEE-ECSSCCCEEECTTTC--CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred ---------eeeeeeec-cCCCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 11001111 122346778888 44 5666666778999999887654333332 245778999999995
Q ss_pred EEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeee------------cccCcCeE-EEEec--------C-CCEEEEeCCC
Q 014475 233 FYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL------------SDHSKAVT-CLAYS--------T-GDLLISGSED 289 (424)
Q Consensus 233 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~~--------~-~~~l~t~~~d 289 (424)
|++. ...+.|..++.+........ ...+... ...-.... .++.. + +.++++-...
T Consensus 284 lyv~d~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDWKTKRLTT--PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECC--CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred EEEEECCCCEEEEEeCCcccccccc--eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 5554 56778999887643100000 0000000 00011223 44442 3 4555665667
Q ss_pred CcEEEEeCCCCcEEEEEecc---------C---------CCeeEEEEEec-CceeeeccCCCceeeccC
Q 014475 290 GMVRVWDPITHNIVRMFRLA---------K---------GPVNNILVVRR-PLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~---------~---------~~v~~l~~s~~-~~~l~~~~~d~~i~iw~~ 339 (424)
+.|+.++ .+|... ++.+. . ..-..++++|+ +.++++-.....|+..++
T Consensus 362 ~~I~~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 362 HCIRILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp TEEEEEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred cEEEEEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 7888888 456433 33221 1 14578999984 666666556666766554
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.55 E-value=0.00045 Score=62.43 Aligned_cols=219 Identities=10% Similarity=-0.018 Sum_probs=133.9
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC----cee-eeecCCCCeeEEE
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QVE-VKSLPAEPIKPIA 87 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~----~~~-~~~~~~~~v~~~~ 87 (424)
..|+..++........+. ....+..++ |.+.+..|..+....+.|..++++.. ... ...........++
T Consensus 92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp TEEEEECTTSCSCEEEEC----SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred ceeEEEccCCcceeEecc----ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence 578888888665544433 234567777 99876666666544489999998752 222 2222345678899
Q ss_pred ECC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-C-CCcEEEEeCCcccchhcccccc
Q 014475 88 ANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 88 ~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~ 164 (424)
+.+ .+++.++-...+.|.+.+++.......+.........|++.|.+..|..+. . .+.|...++...
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~---------- 235 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------- 235 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC----------
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC----------
Confidence 988 555556656678899999875544444444455689999999655555443 2 367888887531
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
.........-.....|++++.+. .+.++-...+.|..+|+........... -.....+++ ..+.++++-...+.
T Consensus 236 -~~~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 236 -DIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA 312 (400)
T ss_dssp -SCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCS
T ss_pred -ccEEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCe
Confidence 11111222334668899997762 4444445567899999865433322221 233456666 24455556666778
Q ss_pred EEEEEcCCC
Q 014475 242 IYIAALNAE 250 (424)
Q Consensus 242 i~i~d~~~~ 250 (424)
|..+|..++
T Consensus 313 V~~~~~~~G 321 (400)
T 3p5b_L 313 IFSANRLTG 321 (400)
T ss_dssp EEEEESSSC
T ss_pred EEEEEcCCC
Confidence 888886665
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.54 E-value=0.00011 Score=61.36 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=128.0
Q ss_pred eeccccCCeEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEE
Q 014475 117 KWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 117 ~~~~~~~~i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~ 194 (424)
.+.+-...+..++|+|+++. +++...++.|...|... ..+..+. .-....-.+++.+++ .++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g------------~v~~~i~l~g~~D~EGIa~~~~g--~~~vs 86 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG------------DLIRTIPLDFVKDLETIEYIGDN--QFVIS 86 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC------------CEEEEEECSSCSSEEEEEECSTT--EEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC------------CEEEEEecCCCCChHHeEEeCCC--EEEEE
Confidence 44555678999999997654 45577788888888741 1222221 122456677777665 66666
Q ss_pred EeCCCcEEEEecCCCce---eeeee-------cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 195 ASEDRTCKVWSLLKGRL---LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 195 ~~~d~~v~iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
.-.++.+.++++..... +.... .......++++|.++.|+++.......+|.++. ..... .......
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~--~l~i~~~ 163 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSN--ELHISKD 163 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSS--CCEEEEC
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCC--ceeeecc
Confidence 55677888888765442 22221 233458999999998888877666666666652 11000 0111111
Q ss_pred --e--cccCcCeEEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCC---------CeeEEEEEecCceeeecc
Q 014475 265 --L--SDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 265 --~--~~~~~~i~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~~l~~~~ 329 (424)
+ ..+...+.+++++| +++++.......|..+|.. ++.+..+....+ .-..++|.++|+..++ +
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 0 11334678999999 7788888888999999965 777776664422 4578999999975555 5
Q ss_pred CCCceeecc
Q 014475 330 FSNPHTSSR 338 (424)
Q Consensus 330 ~d~~i~iw~ 338 (424)
+.+.++.+.
T Consensus 242 E~n~~y~f~ 250 (255)
T 3qqz_A 242 EPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEEE
Confidence 655444443
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.52 E-value=0.00026 Score=69.51 Aligned_cols=239 Identities=10% Similarity=-0.051 Sum_probs=144.4
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCC-CCEEEEecCCCcEEEEEccCc----ceeeeeccccCCeEEEEEccCC-
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDG- 134 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~- 134 (424)
..|+..++..............+..++|.+. +.++++-...+.|+.+++... .....+.........|++.+.+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence 4677777776655544455667889999985 445555556678988888653 2233333344567789998766
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-CcEEEEecCCCceee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR 213 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~ 213 (424)
+++++-...+.|.+.++... .....+...-.....|++.|... .++++-... +.|...++.......
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~-----------~~~~l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp EEEEEETTTTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cEEEEecCCCeEEEEeCCCC-----------eEEEEEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEE
Confidence 45555566788999998541 11111223334578899988752 344443233 678888886544333
Q ss_pred eee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCc
Q 014475 214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM 291 (424)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~ 291 (424)
.+. .-.....|++++.+..|+.+. ..+.|..++++.... ..+......-....+|++..+.++++-...+.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecCCCccCCCCEEEEeCCEEEEEECCCCE
Confidence 333 235688999998776666664 456799999876431 11211111223455677655666677777888
Q ss_pred EEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475 292 VRVWDPITHNIVRMFRLAKGPVNNILV 318 (424)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (424)
|...|..+|+.+..+.........|++
T Consensus 625 I~~~dk~tG~~~~~l~~~l~~P~~i~v 651 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLAENLLSPEDMVL 651 (791)
T ss_dssp EEEEETTTCCCCEEEECSCSCCCCEEE
T ss_pred EEEEeCCCCcceEEeecCCCCceeEee
Confidence 999998888777666533333334443
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.51 E-value=0.00014 Score=66.48 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=138.9
Q ss_pred CeeEEEECCC--CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCC---C-cEEEEeCCccc
Q 014475 82 PIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED---G-CVRIWSLLTVF 155 (424)
Q Consensus 82 ~v~~~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~ 155 (424)
....++|+|+ +..|..+...+.|+.+|+.++...... ........++++++++++++.... . .+...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~- 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG- 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-
Confidence 4678999984 344555444488999998777655443 345568999999999944443321 1 1333332110
Q ss_pred chhcccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCCcEEEEecCCCceeeee-e--cCcceeEEEECCCCC
Q 014475 156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI-V--FPSVIDAIALDPAEH 231 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~--~~~~i~~~~~~~~~~ 231 (424)
......+. .-.....+++.+ ++ .+.++-..++.|+.+|..++.....+ . .......++++|+++
T Consensus 218 ---------~~~~~~~~-~~~~P~giavd~~~G--~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 218 ---------FTERLSLC-NARGAKTCAVHPQNG--KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp ---------TCCEEEEE-ECSSBCCCEECTTTC--CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred ---------eecccccc-ccCCCCEEEEeCCCC--eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 00001111 123345677887 44 55556556788999998877653332 2 122234699999999
Q ss_pred EEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeee------------ecccCcCeEEEEe---------cC-CCEEEEeCC
Q 014475 232 VFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGS------------LSDHSKAVTCLAY---------ST-GDLLISGSE 288 (424)
Q Consensus 232 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~---------~~-~~~l~t~~~ 288 (424)
.|+++ ...+.|+.++.+........ ...+.. ....-.....+++ .+ ++++++-..
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAV--PYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCC--CEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCc--EEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 66555 45678999887642110000 000000 0011234677888 56 677777777
Q ss_pred CCcEEEEeCCCCcEEEEEeccC------------------CCeeEEEEE-ecCceeeeccCCCceeeccC
Q 014475 289 DGMVRVWDPITHNIVRMFRLAK------------------GPVNNILVV-RRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~------------------~~v~~l~~s-~~~~~l~~~~~d~~i~iw~~ 339 (424)
.+.|+.++. +|. +.++.+.. ..-..++++ +++.++++=...+.|+..++
T Consensus 364 n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 364 SHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 889999985 564 44433221 125678898 66766666666666776654
No 282
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.47 E-value=1.9e-06 Score=83.80 Aligned_cols=238 Identities=11% Similarity=-0.020 Sum_probs=138.9
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEe-cCCCcEEEEEccC----cceeeeeccccCCeEEEEEcc-CC
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG 134 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~ 134 (424)
+.|+..++.+.+..........+..++|++.+..|+.+ ...+.|+.+++.. ......+.........|++.+ .+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g 465 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 465 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence 57888888776655444445567899999876666555 4457899999875 222222222223356688875 45
Q ss_pred cEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-CC-CcEEEEecCCCcee
Q 014475 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-RTCKVWSLLKGRLL 212 (424)
Q Consensus 135 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~ 212 (424)
+++++-...+.|.++++.... ....+.........+++.|.+ ..|+.+. .. +.|..+++.... .
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~-----------~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~-~ 531 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVK-----------RKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVD-I 531 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCC-----------EEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCC-C
T ss_pred cEEEEeccCCeEEEEecCCCc-----------eEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCC-e
Confidence 555555567889999985411 111112222345678888765 3444333 22 678888775432 2
Q ss_pred eeee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475 213 RNIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 213 ~~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d 289 (424)
..+. .-...+.|+++|++..|+.+ ...+.|..+++..... ..+............|++..+.++++....
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~~~lywtd~~~ 604 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIIN 604 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEETTEEEEECSTT
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEECCEEEEEeCCC
Confidence 2221 22456789999976555554 4567899999875321 112111111223445555556677777778
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 290 GMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
+.|..++..+++.+..+.........|++.
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp TCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred CeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 899999998898887775433334444443
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.47 E-value=0.00015 Score=62.83 Aligned_cols=201 Identities=14% Similarity=0.269 Sum_probs=130.0
Q ss_pred CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC----CcE--EE--EeeC--CCcEEEEeCCcccchhcc
Q 014475 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSF--LI--SGSE--DGCVRIWSLLTVFEECES 160 (424)
Q Consensus 91 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--l~--s~~~--dg~i~iwd~~~~~~~~~~ 160 (424)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ ++. ++ +.-. +.+|++|++.....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---- 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---- 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC----
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC----
Confidence 3455555566778999999 8888888764 56777777662 222 23 3333 57899997732110
Q ss_pred cccccceEEeec-------CCcCceeEEEE--EEcCceeEEEEEeCCCcEEEEec-------CCCceeeeeecCcceeEE
Q 014475 161 QRASHLYLHSFT-------GHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL-------LKGRLLRNIVFPSVIDAI 224 (424)
Q Consensus 161 ~~~~~~~~~~~~-------~~~~~i~~~~~--~~~~~~~~l~~~~~d~~v~iwd~-------~~~~~~~~~~~~~~i~~~ 224 (424)
.+..+. .....+..+++ ++.....++++...+|.+..|++ .+.+.++.+.....+..+
T Consensus 112 ------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc 185 (355)
T 3amr_A 112 ------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM 185 (355)
T ss_dssp ------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred ------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence 122221 11155667777 44332246888888999999998 345677888888899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeec-cc-CcCeEEEEec--C-CC-EEEEeC-CCCcEEEEeC
Q 014475 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DH-SKAVTCLAYS--T-GD-LLISGS-EDGMVRVWDP 297 (424)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~--~-~~-~l~t~~-~dg~i~iwd~ 297 (424)
...+....|+++-.+..|..++.+...... ...+.... ++ ...+..|++- + ++ +|++++ .++++.+||.
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 999999999999998777666655332110 13333331 22 2467888874 3 33 565555 6779999999
Q ss_pred C-CCcEEEEEec
Q 014475 298 I-THNIVRMFRL 308 (424)
Q Consensus 298 ~-~~~~~~~~~~ 308 (424)
. +.+.+..|.-
T Consensus 262 ~~~~~~vg~f~I 273 (355)
T 3amr_A 262 QGKNKYVADFRI 273 (355)
T ss_dssp STTCCEEEEEEE
T ss_pred CCCCcEEEEEEe
Confidence 6 6777777763
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.44 E-value=0.00052 Score=59.80 Aligned_cols=220 Identities=10% Similarity=0.004 Sum_probs=131.7
Q ss_pred CceEEEeCCCCc--eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEE
Q 014475 13 TGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAA 88 (424)
Q Consensus 13 g~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~ 88 (424)
..|+..|+.... ....+.. ......++ |.+.+..|..+....+.|..++.+.... ............+++
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~----~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGG----LEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEE----EEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred CeEEEEECCCCceEEEEEecC----CCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 579999998663 1111211 12345666 9987666665544448999999876632 122223345678899
Q ss_pred CC-CCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhccccccc
Q 014475 89 NS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 89 s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
.+ ++++.++-...+.|.+++++.......+.........+++.|.+..|..+. ..+.|...++... ..
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---------~~ 157 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SR 157 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---------SC
T ss_pred EcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---------Ce
Confidence 87 455555656677899999865433333334456678999998655555544 2567888887431 11
Q ss_pred ceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEEECCCCCEEEEEeCCCcEEE
Q 014475 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
.......-...+.+++++++. .+.++=+..+.|..+|+.......... .......+++. .+.++++-...+.|..
T Consensus 158 --~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 158 --FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILA 233 (318)
T ss_dssp --EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred --EEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence 111122233557899998652 455555567889999986433222222 23345566664 3445555556778888
Q ss_pred EEcCCCC
Q 014475 245 AALNAES 251 (424)
Q Consensus 245 ~d~~~~~ 251 (424)
++..++.
T Consensus 234 ~~~~~G~ 240 (318)
T 3sov_A 234 CNKYTGE 240 (318)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 8886653
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.42 E-value=0.00078 Score=59.06 Aligned_cols=269 Identities=9% Similarity=0.021 Sum_probs=143.3
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCc-eeeeec----CCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~-~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
..+.++. |.+++..+++ +.. |.|. ...+.++ -..... ....+.++.|.+ +..+++ +..|.|.. ....
T Consensus 36 ~~~~~v~--~~~~~~~~~~-G~~-g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 36 ATILDMS--FIDRHHGWLV-GVN-ATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDG 107 (327)
T ss_dssp SCEEEEE--ESSSSCEEEE-ETT-TEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESST
T ss_pred CcEEEEE--ECCCCcEEEE-cCC-CeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCC
Confidence 3566776 7777776664 444 6553 3333332 111111 244789999986 444444 55664443 2233
Q ss_pred cceeeeec---cccCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475 112 GRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 112 ~~~~~~~~---~~~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (424)
|+.-.... .+...+..+.+.+++..++++ .+|.|.. .|- ..............+..+.+.+++
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------G~tW~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------GKNWQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------TSSEEEEECSCCCCEEEEEECTTS
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------CCCCEEeecCCCcceEEEEEcCCC
Confidence 33322221 233557788887777666555 4554422 221 111222223445577888887765
Q ss_pred ceeEEEEEeCCCcEEEEec--CCCceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeee
Q 014475 188 VSATIVSASEDRTCKVWSL--LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (424)
Q Consensus 188 ~~~~l~~~~~d~~v~iwd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (424)
..++.+...+..+-.|- .+-+.+. ......+..+.+.+++..+ +.+.+|.+++.+.+.+.. +..+..-
T Consensus 175 --~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t------W~~~~~~ 244 (327)
T 2xbg_A 175 --EYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN------WGELLSP 244 (327)
T ss_dssp --CEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE------ECCCBCT
T ss_pred --cEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe------eEeccCC
Confidence 56655544333333442 2222221 1245678889999988755 455678777764332210 1111100
Q ss_pred -cccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEec---cCCCeeEEEEEecCceeeeccCCCceeeccC
Q 014475 266 -SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (424)
Q Consensus 266 -~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~ 339 (424)
..+...+.++.+.+ +.+++++. +|.| ++....|+.-..+.. ....+.++.|.+++. +++++.+|.|.-++-
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 01224578888887 66666655 6766 445455554444442 245788999986665 555567887766553
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.41 E-value=2.1e-05 Score=77.43 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=108.6
Q ss_pred CeeEEEEC-CCCCEEEEecC-C----CcEEEEEccCc-ceeee-eccccCCeEEEEEccCCcEEEEeeCC-----CcEEE
Q 014475 82 PIKPIAAN-SHGTYIAGGGQ-S----GDIYMWEVASG-RLLKK-WHAHYRAVTCLVFSEDGSFLISGSED-----GCVRI 148 (424)
Q Consensus 82 ~v~~~~~s-~~~~~l~~~~~-d----g~v~iwd~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~i 148 (424)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+.. +.. ....+.|+||++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886533 2 24999999988 63321 211 13468899999888877665 25788
Q ss_pred EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC---CCcEEEEecCCCc-ee--eeee--cCcc
Q 014475 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGR-LL--RNIV--FPSV 220 (424)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~--~~~~ 220 (424)
+++.++.. ....+... ........+.|++++ ++|+..+. ...|.++|+.++. .. ..+. ....
T Consensus 252 ~~lgt~~~-------~~~lv~~~-~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 252 HVMGKLQS-------EDVCLYEE-HNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp EETTSCGG-------GCEEEEEC-CCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred EECCCCch-------hcEEEEec-CCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 88865221 11112111 222345677899998 66655442 3458888987752 12 2222 2334
Q ss_pred eeEEEECCCCCEEEEEeCC--C--cEEEEEcCCCCCCCCCcCceeeee-ecccCc--CeEEEEecCCCEEEEeCCCCc--
Q 014475 221 IDAIALDPAEHVFYAGSRD--G--SIYIAALNAESPSTSSYGMHIIGS-LSDHSK--AVTCLAYSTGDLLISGSEDGM-- 291 (424)
Q Consensus 221 i~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~l~t~~~dg~-- 291 (424)
...+.|+..+.+++....+ + .|..+++.+... +. . +..+.. .+..+.+..+.++++...++.
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~---~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~ 392 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WS---HVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTR 392 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CC---CEEECCCSSEEEEEEEECSSEEEEEEEETTEEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ce---eeEECCCCCcEEEEEEEECCEEEEEEEeCCEEE
Confidence 4455544444444444443 2 566666654210 11 1 112222 345555554556666677775
Q ss_pred EEEEeC
Q 014475 292 VRVWDP 297 (424)
Q Consensus 292 i~iwd~ 297 (424)
|.++++
T Consensus 393 l~~~dl 398 (751)
T 2xe4_A 393 IWTMMA 398 (751)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 555565
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00017 Score=65.87 Aligned_cols=232 Identities=7% Similarity=0.023 Sum_probs=126.6
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCc----eeEEEEECCCCcee-eeecC
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVE-VKSLP 79 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~----g~i~vwd~~~~~~~-~~~~~ 79 (424)
|..+. ..+.|+.+|...+...... . .......++ ++++++.|.++...+ ..+.+.+.+..... .....
T Consensus 152 Lyv~d-~~~~I~~id~~~~~v~~~~-~---~~~~P~~ia--~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~ 224 (430)
T 3tc9_A 152 LYLVG-EQHPTRLIDFEKEYVSTVY-S---GLSKVRTIC--WTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTK 224 (430)
T ss_dssp EEEEE-BTEEEEEEETTTTEEEEEE-C---CCSCEEEEE--ECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE
T ss_pred EEEEe-CCCcEEEEECCCCEEEEEe-c---CCCCcceEE--EeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc
Confidence 44444 3378999998866544333 2 223456666 999999666554321 23444443322110 11112
Q ss_pred CCCeeEEEECC-CCCEEEEecCCCcEEEEEccCcceeeeecc-ccCCeEEEEEccCCcEE-EEeeCCCcEEEEeCCcccc
Q 014475 80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFE 156 (424)
Q Consensus 80 ~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~ 156 (424)
......++++| ++.++++-..++.|..++...+........ .......++|+|++++| ++-...+.|..++......
T Consensus 225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~ 304 (430)
T 3tc9_A 225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTK 304 (430)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccc
Confidence 34567889999 777777766778999999876654222221 22457899999999954 4545677899987643100
Q ss_pred hhcccccccceEEee------------cCCcCcee-EEEEEE------cCceeEEEEEeCCCcEEEEecCCCceeeeeec
Q 014475 157 ECESQRASHLYLHSF------------TGHTLRIT-DIVIGY------GGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~~~------~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 217 (424)
... ....+... ...-.... .++..+ +..+.+.++-...+.|+.++. +++.......
T Consensus 305 ~~~----~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~ 379 (430)
T 3tc9_A 305 RLT----TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGR 379 (430)
T ss_dssp EEC----CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEEC
T ss_pred ccc----ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeC
Confidence 000 00000000 00011122 344432 122355555556678888883 4543333221
Q ss_pred ---------C---------cceeEEEECCC-CCEEEEEeCCCcEEEEEcC
Q 014475 218 ---------P---------SVIDAIALDPA-EHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 218 ---------~---------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 248 (424)
. .....++++|+ +.++++-..++.|+.++++
T Consensus 380 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 1 14678889885 5555554556677777653
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.39 E-value=0.00013 Score=66.60 Aligned_cols=234 Identities=11% Similarity=0.051 Sum_probs=134.0
Q ss_pred eEEecceeecC--CCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC---C-cEEEEEccCc
Q 014475 39 LACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G-DIYMWEVASG 112 (424)
Q Consensus 39 v~~~~~~~~~~--~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g-~v~iwd~~~~ 112 (424)
...++ +.|+ ...|.++... +.|+.++..++..............++++++|+++++.... . .+...+...+
T Consensus 141 P~gva--vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMM--FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEE--ECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEE--EccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34555 8874 3444454444 78999998877766555556678999999999955543311 1 1333333222
Q ss_pred cee-eeeccccCCeEEEEEcc-CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 113 RLL-KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 113 ~~~-~~~~~~~~~i~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
... ..+. .......++++| ++.++++-..++.|+.+|..++... ..+... +....-..+++++++ +
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--------~~~~~~-~~~~~~~~ia~dpdG--~ 285 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--------EEEVMM-DTKGSNFHIVWHPTG--D 285 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--------EEEEEC-SCCSSCEEEEECTTS--S
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--------EEEecc-CCCCCcccEEEeCCC--C
Confidence 110 1121 234456789999 7776666667788999998642110 011111 111223468999988 5
Q ss_pred -EEEEEeCCCcEEEEecC--CCcee--eeeec----------------CcceeEEEE---------CCCCCEEEEEeCCC
Q 014475 191 -TIVSASEDRTCKVWSLL--KGRLL--RNIVF----------------PSVIDAIAL---------DPAEHVFYAGSRDG 240 (424)
Q Consensus 191 -~l~~~~~d~~v~iwd~~--~~~~~--~~~~~----------------~~~i~~~~~---------~~~~~~l~~~~~dg 240 (424)
++++-...+.|..++.. ++... ..+.. -.....+++ .+++.++++-...+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 45555567889998865 23211 11110 123567888 67777777666778
Q ss_pred cEEEEEcCCCCCCCCCcCceeeeeecc------------------cCcCeEEEEec-C-CCEEEEeCCCCcEEEEeCC
Q 014475 241 SIYIAALNAESPSTSSYGMHIIGSLSD------------------HSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~-~-~~~l~t~~~dg~i~iwd~~ 298 (424)
.|+.++... . +..+.+ .-.....++++ + +.++++-..++.|+.++++
T Consensus 366 ~I~~~~~~G-~----------v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 366 TVRVLTPEG-R----------VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECTTS-E----------EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCC-C----------EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 898887532 1 111110 11346778888 4 5555555566777777653
No 289
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.33 E-value=0.0014 Score=62.85 Aligned_cols=224 Identities=6% Similarity=-0.080 Sum_probs=140.8
Q ss_pred eeEEEEECCCCceeeee--cCCCCeeEEEECCCCCEE-EEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccC-CcE
Q 014475 61 GSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSF 136 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~--~~~~~v~~~~~s~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 136 (424)
+.|+..++++....... ..-..+..++|++.+..| ++-..++.|..+++........+.........+++.+. +++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence 68899998865543222 223578899999865554 45556788999998655443333333345778999875 445
Q ss_pred EEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe--CCCcEEEEecCCCceeee
Q 014475 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRN 214 (424)
Q Consensus 137 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~ 214 (424)
+++-...+.|.+.++.... ...+ ....-.....+++.|.. ..|+.+. ..+.|...++........
T Consensus 95 Y~tD~~~~~I~v~~~dG~~---------~~~l--~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQH---------RQVL--VWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp EEEETTTTEEEEEETTSTT---------CEEE--ECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EEEECCCCEEEEEecCCCc---------EEEE--EeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 5555567789999985421 1111 11233456789998854 3444443 256788888765443333
Q ss_pred eecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEE
Q 014475 215 IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR 293 (424)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~ 293 (424)
...-.....+++++++..|+.+. ..+.|..+|++.... + .+.........+++..+.++++-...+.|.
T Consensus 162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQDYIYWTDWSRRSIE 231 (628)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECCEEEEecCCCCEEE
Confidence 33445678999999776666654 567899999876431 1 122233345677776666666766788999
Q ss_pred EEeCCCCcEEEEEe
Q 014475 294 VWDPITHNIVRMFR 307 (424)
Q Consensus 294 iwd~~~~~~~~~~~ 307 (424)
..|..+++....+.
T Consensus 232 ~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 232 RANKTSGQNRTIIQ 245 (628)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 99987776554443
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.29 E-value=0.0013 Score=55.98 Aligned_cols=264 Identities=11% Similarity=0.088 Sum_probs=159.6
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
..|.+-|+..+....+..-.. -+.-.+|..+.+|.-. ..++.|+|+++.+.++.+.- ...|.-=.|-.+. .|+-.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A--dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lV 123 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV 123 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC--SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEE
T ss_pred CEEEEEECCCCCCcccccccc--ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEE
Confidence 689999998866544332221 2334588888887765 57899999999988887764 4567777776544 44444
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeecCCc----CceeEEEEEEcCceeEEEEEeC-------CCcEEEEecCCC
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT----LRITDIVIGYGGVSATIVSASE-------DRTCKVWSLLKG 209 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~~-------d~~v~iwd~~~~ 209 (424)
+ +..|+-|+++.. ..+.+.+..|. ..|..-..+++. ++++..+- .|.+.+|..+.+
T Consensus 124 T-~taVyHWs~~~~----------s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 124 T-DNAVYHWSMEGE----------SQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp E-SSEEEEEESSTT----------CCCEEEEECCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred c-CCcEEEEcccCC----------CCCceeeecchhcccceEEEEEECCCC--CEEEEEeEeccCCccceeEEEEeeccc
Confidence 3 347999999642 23344444432 344444444444 66654432 367888887655
Q ss_pred ceeeeeecCcceeEEEEC--CCC-CEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-
Q 014475 210 RLLRNIVFPSVIDAIALD--PAE-HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST- 279 (424)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~--~~~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~- 279 (424)
.....-.|-.....+.+. +.. ..++.+.. .+++++.++.........+..+.+..+. .-.+-.-++..++
T Consensus 191 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~k 270 (365)
T 2xzh_A 191 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 270 (365)
T ss_dssp EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETT
T ss_pred ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEeccc
Confidence 432221132222222221 111 12333322 2589999996542112222223222222 2245567888888
Q ss_pred CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
...+..-..-|.|.+||+.++.++..-+-...+|...+-+....-++.....|.|.--.++..
T Consensus 271 ygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 271 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 788888889999999999999999988877788877666665555666667776665555544
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.27 E-value=0.0034 Score=60.09 Aligned_cols=181 Identities=10% Similarity=0.011 Sum_probs=102.5
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCce--eeeecCCCCeeEEEECC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANS 90 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~--~~~~~~~~~v~~~~~s~ 90 (424)
..|+.-|+.......++. .........++ |++.+..+..+....+.|..++.+.... ............+++.+
T Consensus 18 ~~I~~i~~~~~~~~~~~~--~~~~~~~~~ld--~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 18 RDLRLVDATNGKENATIV--VGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 93 (619)
T ss_dssp SBEEEECCC-----------CBCCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEET
T ss_pred ccEEEEeCCCCcceEEEE--EcCCCceEEEE--EEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEe
Confidence 679999987543111111 11224456777 9987777766655448899999876532 22222235789999998
Q ss_pred CC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC--CCcEEEEeCCcccchhcccccccce
Q 014475 91 HG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 91 ~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
.+ ++.++-...+.|.+.++........+.........|++.|.+..|..+.. .+.|...++... ..
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---------~~-- 162 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---------SR-- 162 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---------SC--
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---------ce--
Confidence 54 45555566788999998654333333344456788999986555544442 356666666431 11
Q ss_pred EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC
Q 014475 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209 (424)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~ 209 (424)
.......-.....+++++.+. .+.++-...+.|...|+...
T Consensus 163 ~~l~~~~~~~P~Glald~~~~-~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTT-EEEEEETTTCCEEEESSSCC
T ss_pred EEEEeCCCCCCcEEEEEccCC-EEEEEeCCCCeEEEecCCCC
Confidence 111112234567788887652 44455455667888887543
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.00072 Score=62.06 Aligned_cols=253 Identities=9% Similarity=0.021 Sum_probs=144.7
Q ss_pred CeeEEEECC-CCCEEEEe-cCCCcEEEEEccCcceeeeecc---ccCCeEEEEE-------ccCCcEEEEeeCCC-----
Q 014475 82 PIKPIAANS-HGTYIAGG-GQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVF-------SEDGSFLISGSEDG----- 144 (424)
Q Consensus 82 ~v~~~~~s~-~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~---~~~~i~~~~~-------~~~~~~l~s~~~dg----- 144 (424)
....|+|+| ++..|.++ ...+.|++.|++++........ .......++| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34444444 3346789999887765544432 2235899999 99998666665543
Q ss_pred --cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecC-------CCce----
Q 014475 145 --CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-------KGRL---- 211 (424)
Q Consensus 145 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-------~~~~---- 211 (424)
.|.+++...... ... ......+..+ .....++++|++. .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~-~~~-~~~~~~v~~~----~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 220 SPSVYIIKRNADGT-FDD-RSDIQLIAAY----KQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp EEEEEEEECCTTSC-CST-TSCEEEEEEE----SCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CceEEEEecCCCCc-eee-cccceeeccC----CCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 256665322000 000 0000112222 1334677887542 566666678889999997 4543
Q ss_pred -------eee-ee--cCcceeEEEECCCCCEEEEE-eCCCcEEEEEcCCCCCCCCCcCceeeeee---cc---------c
Q 014475 212 -------LRN-IV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL---SD---------H 268 (424)
Q Consensus 212 -------~~~-~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~---------~ 268 (424)
... +. .......++++|+++.|+++ +....|+.++.+........ ...+.-. .+ .
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~--~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT--PYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC--CEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc--cEEecCCCCCCcccCCcccccc
Confidence 112 22 23446799999999965555 45678888776543210000 0000000 00 1
Q ss_pred CcCeE-EEEec-------C-CCEEEEeCCCCcEEEEeCCCCcEEEEEeccC------------------------CCeeE
Q 014475 269 SKAVT-CLAYS-------T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK------------------------GPVNN 315 (424)
Q Consensus 269 ~~~i~-~~~~~-------~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~v~~ 315 (424)
-.... .++.. + +.++++-..+..|+.++ .+|. +.++.+.. ..-..
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 12234 45554 4 56777767788999998 4563 45554320 12467
Q ss_pred EEEEec-CceeeeccCCCceeeccCCCCCCC
Q 014475 316 ILVVRR-PLYLNLGSFSNPHTSSRRHGSQLP 345 (424)
Q Consensus 316 l~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~ 345 (424)
|+++++ +.+.++=+....|+.+++.+....
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 899986 777777777788888888766543
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.21 E-value=0.0024 Score=55.90 Aligned_cols=229 Identities=12% Similarity=0.070 Sum_probs=123.0
Q ss_pred CceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC
Q 014475 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (424)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~ 111 (424)
..+..+. +.+ +..++ ++.. |.|.. ..+.++ .... .....+..+.+.+++..++++. +|.|..- .+.
T Consensus 80 ~~~~~i~--~~~-~~~~~-~g~~-g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~Dg 150 (327)
T 2xbg_A 80 YRFNSVS--FQG-NEGWI-VGEP-PIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRT-KDS 150 (327)
T ss_dssp CEEEEEE--EET-TEEEE-EEET-TEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEE-SST
T ss_pred ccEEEEE--ecC-CeEEE-EECC-CeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEE-cCC
Confidence 3566776 765 44443 4444 64444 223222 2211 1234578888877777776654 5544321 122
Q ss_pred cceeee-eccccCCeEEEEEccCCcEEEEeeCCCcEEE-EeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 112 GRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 112 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
|+.-.. .......+..+.+.+++.+++.+. +|.+.. .|-.. .....+ -......+..+.+.+++
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG---------~tW~~~--~~~~~~~~~~~~~~~~g-- 216 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQ---------TAWEPH--NRTTSRRLHNMGFTPDG-- 216 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTC---------SSCEEE--ECCSSSCEEEEEECTTS--
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCC---------CceeEC--CCCCCCccceeEECCCC--
Confidence 332222 234456789999999888776664 444433 33200 111111 12344567778877665
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeec-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeee
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (424)
. ++.++.+|.+.+.+...++.-..+.. ...+..+.+.+++..++++. +|.+ .+..+.+.. +..+..
T Consensus 217 ~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t------W~~~~~ 287 (327)
T 2xbg_A 217 R-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT------WQQDVD 287 (327)
T ss_dssp C-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS------CEECGG
T ss_pred C-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc------cEEcCc
Confidence 4 44556678877764333443333321 23578889998777666654 6666 344444321 222221
Q ss_pred ecccCcCeEEEEecCCCEEEEeCCCCcEEEEeC
Q 014475 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297 (424)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~ 297 (424)
.......+.++.|.++..+++++.+|.|.-++-
T Consensus 288 ~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 288 VKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp GTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 112345677888866555667777898777663
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.00078 Score=61.85 Aligned_cols=239 Identities=8% Similarity=0.059 Sum_probs=132.1
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEeccee-------ecCCCccccCCCCc------eeEEEEECCC-
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-------LASSQLREQPSASS------GSILYWSWSK- 70 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~~~~~~~------g~i~vwd~~~- 70 (424)
+++.. ..+.|++.|.+++.....+............++ | .++++.|.++...+ ..|.+.+...
T Consensus 155 yv~~~-~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~ 231 (496)
T 3kya_A 155 YICYD-GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD 231 (496)
T ss_dssp EEEEE-TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred EEEEC-CCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence 33434 456799999887666554433222344567777 8 99999666665442 2366665433
Q ss_pred Ccee-----eeecCCCCeeEEEECC-CCCEEEEecCCCcEEEEEcc-------Ccce-----------eee-ec-cccCC
Q 014475 71 PQVE-----VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA-------SGRL-----------LKK-WH-AHYRA 124 (424)
Q Consensus 71 ~~~~-----~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iwd~~-------~~~~-----------~~~-~~-~~~~~ 124 (424)
+... ...........++++| ++.++++-..++.|..+|+. ++.. ... +. +....
T Consensus 232 G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~ 311 (496)
T 3kya_A 232 GTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311 (496)
T ss_dssp SCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred CceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence 1221 0111123456888999 55656666677889999997 4543 111 11 12345
Q ss_pred eEEEEEccCCcE-EEEeeCCCcEEEEeCCcccchhcccccccceEEe--ecC---------CcCcee-EEEEEEc-----
Q 014475 125 VTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG---------HTLRIT-DIVIGYG----- 186 (424)
Q Consensus 125 i~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~i~-~~~~~~~----- 186 (424)
...++|+|+++. +++-+..+.|+.++......... ......-. ..+ .-.... .++....
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---ccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 689999999995 44445567888866532110000 00000000 000 001223 3333310
Q ss_pred CceeEEEEEeCCCcEEEEecCCCceeeeee-c------------------------CcceeEEEECCC-CCEEEEEeCCC
Q 014475 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-F------------------------PSVIDAIALDPA-EHVFYAGSRDG 240 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~------------------------~~~i~~~~~~~~-~~~l~~~~~dg 240 (424)
..+.++++=...+.|+.++. ++. +..+. . -.....++++++ +.++++=..+.
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~ 466 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGH 466 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCC
Confidence 22266666667788999984 453 33332 1 013567888886 66555556677
Q ss_pred cEEEEEcCCCC
Q 014475 241 SIYIAALNAES 251 (424)
Q Consensus 241 ~i~i~d~~~~~ 251 (424)
+|+.+++....
T Consensus 467 rIrki~~~~~~ 477 (496)
T 3kya_A 467 TIRTISMEQEE 477 (496)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEECCCCc
Confidence 88888887753
No 295
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.19 E-value=0.00081 Score=58.13 Aligned_cols=231 Identities=9% Similarity=0.038 Sum_probs=116.6
Q ss_pred CCCEEEEec-CC-----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccch
Q 014475 91 HGTYIAGGG-QS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEE 157 (424)
Q Consensus 91 ~~~~l~~~~-~d-----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 157 (424)
++.+++.|+ .+ ..+.+||+.+.+-.. .+.........+. .+++.++.|+.+ ..+.+||+.+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~- 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED- 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence 456677776 33 368899987764322 2222112222222 357777887765 3588899866320
Q ss_pred hcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----CcEEEEecCCCceeeeeec--CcceeEEEECCCC
Q 014475 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE 230 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~ 230 (424)
.....+..+......- ++ ...++ ..++.|+.+ ..+.+||+.+.+-...-.. +..-.+++. .++
T Consensus 91 -----~~W~~~~~~p~~r~~~-~~-~~~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~ 160 (301)
T 2vpj_A 91 -----GVWYSVAPMNVRRGLA-GA-TTLGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG 160 (301)
T ss_dssp -----CCCEEECCCSSCCBSC-EE-EEETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT
T ss_pred -----CeeEECCCCCCCccce-eE-EEECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC
Confidence 0022222221111111 11 22244 677777654 3588899877654332221 111122222 266
Q ss_pred CEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475 231 HVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH 300 (424)
Q Consensus 231 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~ 300 (424)
++++.|+.+ ..+.+||+.+.. +..+..+.........+. ..+.+++.|+.+ ..+.+||+.+.
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 777777654 468899987754 333332222222222222 236777777754 46899999876
Q ss_pred cEEEEEeccCCCeeEEEEEecCceeeeccCCC-----ceeeccCCCC
Q 014475 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN-----PHTSSRRHGS 342 (424)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~-----~i~iw~~~~~ 342 (424)
+-...-..........+..-+++.++.|+.++ .+.++|..+.
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 53332111112222223334777778887664 3455565543
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.17 E-value=0.0046 Score=60.70 Aligned_cols=219 Identities=10% Similarity=-0.029 Sum_probs=126.8
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc----ee-eeecCCCCeeEEE
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VE-VKSLPAEPIKPIA 87 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~----~~-~~~~~~~~v~~~~ 87 (424)
..|+..++........+.. ...+..++ |.+....|..+....+.|+.++++... .. ...........|+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~----~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp SSEEEECTTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred cceeEeeccCCcceeeecC----CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 5678888776554443332 24456677 888665555554444889999987531 12 2222345677899
Q ss_pred ECCCC-CEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee-CC-CcEEEEeCCcccchhcccccc
Q 014475 88 ANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-ED-GCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 88 ~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~ 164 (424)
+.+.+ ++.++-...+.|.+.++........+.........|++.|....|+.+. .. +.|...++...
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---------- 547 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------- 547 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----------
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC----------
Confidence 98866 4455556678899999875543333334455689999999755555443 22 67888887431
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
.........-.....|++.+... .++++=...+.|...++........+.. -.....|++. .+.++++-...+.
T Consensus 548 -~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 -DIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 624 (791)
T ss_dssp -CEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred -ceEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCE
Confidence 11112222335677899987652 4444445567899999865443333322 1233455553 2334444445567
Q ss_pred EEEEEcCCC
Q 014475 242 IYIAALNAE 250 (424)
Q Consensus 242 i~i~d~~~~ 250 (424)
|...+..++
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 777776555
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.16 E-value=0.0026 Score=54.23 Aligned_cols=214 Identities=11% Similarity=0.116 Sum_probs=131.7
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG 92 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~ 92 (424)
.+|.|-|+..+....+.. -.....+ .+|..+.+|.-.. .++.++|+++++........++|.-=.|-.+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrp--i~AdsAI------MnP~~~ViALrag--~~LQiFnletK~klks~~~~e~VvfWkWis~~ 118 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRP--ISADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 118 (365)
T ss_dssp EEEEEEETTSTTSCEEEE--CCCSEEE------ECSSSSEEEEEET--TEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred CEEEEEECCCCCCccccc--cccceee------eCCCccEEEEecC--CeEEEechHHhhhhcceecCCccEEEEecCCC
Confidence 367777877765542221 1111222 5677777766653 79999999998877666667888887886554
Q ss_pred CEEEEecCCCcEEEEEccCc-ceeeeecccc----CCeEEEEEccCCcEEEEeeC-------CCcEEEEeCCcccchhcc
Q 014475 93 TYIAGGGQSGDIYMWEVASG-RLLKKWHAHY----RAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECES 160 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~----~~i~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~ 160 (424)
. |+..+ +..|+-|+++.. .+.+.+..|. ..|..-..+++.++++..+- .|.+.+|..+.
T Consensus 119 ~-L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------- 189 (365)
T 2xzh_A 119 T-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------- 189 (365)
T ss_dssp E-EEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-------
T ss_pred e-EEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-------
Confidence 4 44444 347999999753 4455554432 45666667788888765432 36788998854
Q ss_pred cccccceEEeecCCcCceeEEEEEEcC-ceeEEEEEeC---CCcEEEEecCCC---ce-----eeeee-----cCcceeE
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASE---DRTCKVWSLLKG---RL-----LRNIV-----FPSVIDA 223 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~~~---d~~v~iwd~~~~---~~-----~~~~~-----~~~~i~~ 223 (424)
...+.+.+|...-..+.+..+. ....++.+.. .+.+++-++... .+ ...+. ..+-.-+
T Consensus 190 -----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVa 264 (365)
T 2xzh_A 190 -----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 264 (365)
T ss_dssp -----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEE
T ss_pred -----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEE
Confidence 2334556665544333222111 1123333332 257888888543 11 11111 1234567
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 224 IALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
+..++....++.-+.-|.+++||+.++
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTg 291 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETG 291 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccC
Confidence 788888888999999999999999997
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.10 E-value=0.013 Score=60.21 Aligned_cols=307 Identities=12% Similarity=0.076 Sum_probs=160.1
Q ss_pred EEeecCCC-CCceEEEeCCCCceEEEeeCC-CCCCCceEEecceeecCCCccccCCCCceeEEEEECC--CCceee---e
Q 014475 4 LIASSSVA-DTGIGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV---K 76 (424)
Q Consensus 4 ~lat~~~~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~--~~~~~~---~ 76 (424)
++|.|. . |++|+|+++.+.+.+...... ...+..+..+. + ....+|.++-.+ |.+.-+.++ +++..- .
T Consensus 573 ~~aVg~-~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~--~-~~~~~L~igl~d-G~l~~~~~d~~tg~l~d~r~~ 647 (1158)
T 3ei3_A 573 LCAIGL-WTDISARILKLPSFELLHKEMLGGEIIPRSILMTT--F-ESSHYLLCALGD-GALFYFGLNIETGLLSDRKKV 647 (1158)
T ss_dssp EEEEEE-TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--E-TTEEEEEEEETT-SEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEE-CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--e-CCCcEEEEEeCC-CeEEEEEEcCCCCccccceeE
Confidence 567777 5 999999999987766543321 12333444333 3 334566666665 887766654 333321 1
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCe-EEEEEccC--CcEEEEeeCCCcEEEEeCCc
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-TCLVFSED--GSFLISGSEDGCVRIWSLLT 153 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i-~~~~~~~~--~~~l~s~~~dg~i~iwd~~~ 153 (424)
.....++.-..+...+..-+.+..+....+|.-+ ++.... .-....+ ....|+.. .+-++..+ ++.++|..+.+
T Consensus 648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~ 724 (1158)
T 3ei3_A 648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE 724 (1158)
T ss_dssp ECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred EcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence 2234455544454443332222334455555433 332211 1122233 33445431 23344433 45688888754
Q ss_pred ccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEe-------------------------------------
Q 014475 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------------------------- 196 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~------------------------------------- 196 (424)
.. ....+.+.- ...+..++++|.. +.++.+.
T Consensus 725 ~~---------~~~~~~ipL-~~Tprri~y~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1158)
T 3ei3_A 725 IQ---------KLHIRTVPL-YESPRKICYQEVS--QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS 792 (1158)
T ss_dssp SS---------SEEEEEEEC-SSEEEEEEEEGGG--TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred cC---------CeeEEEEeC-CCCceEEEEcCCC--CEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence 21 111221111 1233444444433 1111111
Q ss_pred ------------CCCcEEEEecCCCceeeeee--cCcceeEEEE---CC-CCCEEEEEe----------CCCcEEEEEcC
Q 014475 197 ------------EDRTCKVWSLLKGRLLRNIV--FPSVIDAIAL---DP-AEHVFYAGS----------RDGSIYIAALN 248 (424)
Q Consensus 197 ------------~d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~---~~-~~~~l~~~~----------~dg~i~i~d~~ 248 (424)
.-+.+++.|..+.+.+..+. ....+.+++. .. ...++++|+ ..|.|++|++.
T Consensus 793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 11357888888888776666 3344555543 22 247888887 35789999997
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
..+ .+.+... ...++|++++--.| +|++|- ..+|++|++...+.++.-..+-..|..+.....+.+++.|
T Consensus 873 ~~k-------L~lv~~~-~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vg 942 (1158)
T 3ei3_A 873 DGK-------LQTVAEK-EVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVG 942 (1158)
T ss_dssp TTE-------EEEEEEE-EESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred CCE-------EEEEEEE-EcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEE
Confidence 321 2333322 34678888875445 444443 4789999998765444111122224444555567889998
Q ss_pred cCCCceeeccCC
Q 014475 329 SFSNPHTSSRRH 340 (424)
Q Consensus 329 ~~d~~i~iw~~~ 340 (424)
..-..+.+...+
T Consensus 943 D~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 943 DLMRSVLLLAYK 954 (1158)
T ss_dssp ESSBCEEEEEEE
T ss_pred EhhheEEEEEEE
Confidence 877777776544
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.0013 Score=57.12 Aligned_cols=200 Identities=13% Similarity=0.198 Sum_probs=119.0
Q ss_pred EeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCc--c-ccCCCC--ceeEEEEECC--CCceeeee
Q 014475 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--R-EQPSAS--SGSILYWSWS--KPQVEVKS 77 (424)
Q Consensus 5 lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~~~~~~--~g~i~vwd~~--~~~~~~~~ 77 (424)
++... +.+.+.++|+ +|+.++.+.. +..+.|.... .|.-.|+. + +++..+ +++|.+++++ +++.....
T Consensus 43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 44444 5688999999 7999988853 2233333211 13323332 3 333333 4899999774 33322221
Q ss_pred c------CC-CCeeEEEE--CCC-CC-EEEEecCCCcEEEEEcc-------CcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475 78 L------PA-EPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (424)
Q Consensus 78 ~------~~-~~v~~~~~--s~~-~~-~l~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 139 (424)
. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. .+.+..+...+....|+.
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56677777 774 44 67778888999999983 3355666654 356888999988888999
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeec-C-CcCceeEEEEEEcCcee-EEEEEe-CCCcEEEEecC-CCceeee
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-G-HTLRITDIVIGYGGVSA-TIVSAS-EDRTCKVWSLL-KGRLLRN 214 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~-~l~~~~-~d~~v~iwd~~-~~~~~~~ 214 (424)
+-++.-|..++.+... ......+.... + -...+..|++-+..++. +|++++ .++++.+||.. +.+.+..
T Consensus 197 ~eEd~GIw~~da~p~~------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDG------GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EETTTEEEEEECSTTS------CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred ecccceEEEEeCCcCC------CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9988666555543210 01122233321 2 23467888885443223 555555 67799999986 5555555
Q ss_pred ee
Q 014475 215 IV 216 (424)
Q Consensus 215 ~~ 216 (424)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=4.1e-05 Score=74.49 Aligned_cols=219 Identities=9% Similarity=-0.036 Sum_probs=123.0
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCC----Cceeeee-cCCCCeeEEE
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA 87 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~-~~~~~v~~~~ 87 (424)
+.|+..++.+.+....+... ..+..++ |.+.+..|..+....+.|+.+++.+ ....... ........|+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~----~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNL----RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TC-CEECTTSCCEECCSCCC----TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred cceEEEeCCCCcceeeeccC----cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 57888888766554433322 2334455 8887766666654448999999875 2221111 1223456788
Q ss_pred ECCC-CCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-C-CcEEEEeCCcccchhcccccc
Q 014475 88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS 164 (424)
Q Consensus 88 ~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~ 164 (424)
+.+. ++++++-...+.|.++++........+.........+++.|.+.+|+.+.. . +.|..+++... .
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---------~ 530 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---------D 530 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---------C
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---------C
Confidence 8864 454555456678999998655433333333345678899986555444432 2 67777776431 1
Q ss_pred cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeec---CcceeEEEECCCCCEEEEEeCCCc
Q 014475 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
...+ ....-...+.|++++++. .++++-+..+.|..+|+........+.. ......+++..+ .++++....+.
T Consensus 531 ~~~l--~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~ 606 (699)
T 1n7d_A 531 IYSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 606 (699)
T ss_dssp CCEE--SCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred eeEE--EeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence 1111 111223456789988752 4555555677899999864332222211 122334555433 44445556678
Q ss_pred EEEEEcCCC
Q 014475 242 IYIAALNAE 250 (424)
Q Consensus 242 i~i~d~~~~ 250 (424)
|..++..++
T Consensus 607 V~~~d~~~G 615 (699)
T 1n7d_A 607 IFSANRLTG 615 (699)
T ss_dssp EEEEETTTE
T ss_pred EEEEEccCC
Confidence 888887654
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.04 E-value=0.015 Score=59.72 Aligned_cols=300 Identities=11% Similarity=0.070 Sum_probs=155.3
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCcee--eeecCCCCeeEEEECCC
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSH 91 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s~~ 91 (424)
.|++.+...+..+..++...+ ..|...+ .++..++.+. . +.+.++.++.++.. ........|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~--~~I~~As----~n~~~vvva~-g-~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~ 564 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQA--KNISVAS----CNSSQVVVAV-G-RALYYLQIHPQELRQISHTEMEHEVACLDITPL 564 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTC--CCCCEEE----ECSSEEEEEE-T-TEEEEEEEETTEEEEEEEEECSSCEEEEECCCC
T ss_pred EEEEEECCCCeEEEEEECCCC--CEEEEEE----eCCCEEEEEE-C-CEEEEEEeeCCceeeecccCCCCceEEEEeecC
Confidence 467777665556666643321 2333322 2234455553 3 77888877654322 22334678999999863
Q ss_pred ------CCEEEEecC-CCcEEEEEccCcceeeeecc-ccCCeEEEEEcc--CCcEEEEeeCCCcEEEEeCCcccchhccc
Q 014475 92 ------GTYIAGGGQ-SGDIYMWEVASGRLLKKWHA-HYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 92 ------~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 161 (424)
+.++++|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+.+.......
T Consensus 565 ~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l--- 641 (1158)
T 3ei3_A 565 GDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLL--- 641 (1158)
T ss_dssp SSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCE---
T ss_pred CCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcc---
Confidence 478999986 99999999987665543221 112445554432 34578899999998766654211000
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcce-eEEEECCC--CCEEEEEeC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI-DAIALDPA--EHVFYAGSR 238 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i-~~~~~~~~--~~~l~~~~~ 238 (424)
... ...+-+ ..++.=..+...+. ..+++.+ +.-..++.-+ ++....-..-..+ ....|+.. ..-++..+
T Consensus 642 --~d~-r~~~LG-~~pv~L~~~~~~~~-~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~- 713 (1158)
T 3ei3_A 642 --SDR-KKVTLG-TQPTVLRTFRSLST-TNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN- 713 (1158)
T ss_dssp --EEE-EEEECC-SSCCEEEEEESSSC-EEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-
T ss_pred --ccc-eeEEcC-CCceEEEEEeeCCc-eeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-
Confidence 000 011122 23443333333332 2333333 3334444332 3322111111223 33345432 23344333
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCC-----------------------------
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE----------------------------- 288 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~----------------------------- 288 (424)
++.++|..++.... ..+..+. -...+..++++| .+.++.+..
T Consensus 714 ~~~LrI~~i~~~~~-------~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 714 NSTLTIGTIDEIQK-------LHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp SSCEEEEEECCSSS-------EEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred CCceEEEEecccCC-------eeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45699988865421 1222222 234567777777 443332210
Q ss_pred --------------------CCcEEEEeCCCCcEEEEEeccCC-CeeEEEEE---ec-Cceeeecc----------CCCc
Q 014475 289 --------------------DGMVRVWDPITHNIVRMFRLAKG-PVNNILVV---RR-PLYLNLGS----------FSNP 333 (424)
Q Consensus 289 --------------------dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s---~~-~~~l~~~~----------~d~~ 333 (424)
-+.|++.|..+.+.+..+..... .+.+++.- .+ ..+|++|+ ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 13478888888888777664433 34444432 22 46787776 3467
Q ss_pred eeeccCC
Q 014475 334 HTSSRRH 340 (424)
Q Consensus 334 i~iw~~~ 340 (424)
|.++++.
T Consensus 866 i~vf~v~ 872 (1158)
T 3ei3_A 866 IVVFQYS 872 (1158)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888876
No 302
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.03 E-value=0.0023 Score=55.29 Aligned_cols=227 Identities=11% Similarity=0.120 Sum_probs=112.9
Q ss_pred CCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeCCC-----cEEEEeCCcccchhcc
Q 014475 92 GTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECES 160 (424)
Q Consensus 92 ~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~ 160 (424)
+.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++..++.|+.++ .+.+||..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~------ 87 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD------ 87 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT------
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCC------
Confidence 4556666643 358889987764322 12211111122222 677788887553 4788888652
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecCCCceeeeee--cCcceeEEEECCCCCEE
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVF 233 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 233 (424)
....+..+...... .+++ ..++ ..++.|+.++ .+.+||+.+.+-...-. .+..-.+++. -+++++
T Consensus 88 ---~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy 159 (302)
T 2xn4_A 88 ---QWTSVANMRDRRST-LGAA-VLNG--LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLY 159 (302)
T ss_dssp ---EEEEECCCSSCCBS-CEEE-EETT--EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred ---ceeeCCCCCccccc-eEEE-EECC--EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEE
Confidence 11112111111111 1122 2244 6777777553 47788887765333222 1111122222 256666
Q ss_pred EEEeCC-------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475 234 YAGSRD-------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (424)
Q Consensus 234 ~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~ 301 (424)
+.|+.+ ..+.+||+.+.. +..+..+........ ++...+.+++.|+.+ ..+.+||+.+.+
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 666542 358899987754 333332222222222 222347777887754 368999988764
Q ss_pred EEEEEeccCCCeeEEEEEecCceeeeccCCCc-----eeeccCCCC
Q 014475 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP-----HTSSRRHGS 342 (424)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~-----i~iw~~~~~ 342 (424)
-...-..........+...+++.++.|+.++. +.++|..+.
T Consensus 232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 33221111111122233347777788876643 556665543
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.02 E-value=0.0066 Score=53.97 Aligned_cols=215 Identities=10% Similarity=0.106 Sum_probs=133.9
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG 92 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~ 92 (424)
.+|.|-|+..+..+.+..- .....| .+|..+.+|.=.. .++.++|+++.+........++|.-=.|-.+.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi--~AdsAI------MnP~~~iiALrag--~~lQiFnle~K~klks~~~~e~VvfWkWis~~ 117 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI--SADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 117 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC--CCSEEE------ECSSSSCEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEEEETT
T ss_pred CeEEEEECCCCCcceeccc--ccceee------eCCCCcEEEEecC--CeEEEEchHHhhhhcceecCCCceEEEecCCC
Confidence 3677777777655422211 111112 5677777776653 79999999998876666666777776775443
Q ss_pred CEEEEecCCCcEEEEEccCc-ceeeeeccc----cCCeEEEEEccCCcEEEEeeC-------CCcEEEEeCCcccchhcc
Q 014475 93 TYIAGGGQSGDIYMWEVASG-RLLKKWHAH----YRAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECES 160 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~ 160 (424)
.|+..+ +..|+-|++... .+.+.+..| ...|..-..+++.++++..+- .|.+.+|..+.
T Consensus 118 -~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------- 188 (494)
T 1bpo_A 118 -TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------- 188 (494)
T ss_dssp -EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-------
T ss_pred -eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-------
Confidence 455544 357999999643 445555443 245666677888888774432 46788998854
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCc-eeEEEEEeC---CCcEEEEecCCC---ce-----eeeee-----cCcceeE
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSASE---DRTCKVWSLLKG---RL-----LRNIV-----FPSVIDA 223 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~---d~~v~iwd~~~~---~~-----~~~~~-----~~~~i~~ 223 (424)
...+.+.+|...-..+.+..+.. ...++.+.. .+.+++-++... .+ ...+. ..+-.-+
T Consensus 189 -----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 189 -----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp -----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred -----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 23455677766554443322111 134444443 278999998543 11 11111 1234567
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 224 IALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
+..++....++.-+.-|.+++||+.++.
T Consensus 264 mqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 264 MQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEecccCCEEEEEecCceEEEEecccce
Confidence 8888888899999999999999999973
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.00 E-value=0.0072 Score=53.46 Aligned_cols=239 Identities=13% Similarity=0.018 Sum_probs=126.0
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--eeeec---cccCCeEEEEEccC---CcEEEEe-eCC-----Cc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWH---AHYRAVTCLVFSED---GSFLISG-SED-----GC 145 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~---~~~~~i~~~~~~~~---~~~l~s~-~~d-----g~ 145 (424)
-.....++|.|+|+++++ ..+|.|++++ +++. +..+. ........++|+|+ +..|.++ ... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345689999999996665 5568999998 3432 22111 12456889999997 4444443 332 56
Q ss_pred EEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCC
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKG 209 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~ 209 (424)
|..++...... . .....+..+. ........++|.+++ .+.++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~----~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 107 VVRLRHLGERG----V-LDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp EEEEEECSSCE----E-EEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred EEEEEeCCCCc----C-ceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 77777653210 0 0111122222 111233688999987 55555432 245666665431
Q ss_pred ------------ceeeeee-cCcceeEEEECC-CCCEEEEEeCCCcE------EEEEcCCCCCCCCC--------c-Cce
Q 014475 210 ------------RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSI------YIAALNAESPSTSS--------Y-GMH 260 (424)
Q Consensus 210 ------------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~~~~--------~-~~~ 260 (424)
.....+. .-.....++|+| ++.++++-.....+ .+.-+..+..-..+ . ...
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 0111111 123467889999 56655543333321 23333322210000 0 011
Q ss_pred eeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcE------EEEEeccCCCeeEEEEEecCceeeecc
Q 014475 261 IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 261 ~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
+...+ .+......++|..+.++++.-..+.|...++..... ...+......+..+++.|||.+.++..
T Consensus 260 p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22233 223356677875577777777777888887764331 122222346789999999997666543
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.98 E-value=0.0017 Score=56.01 Aligned_cols=217 Identities=12% Similarity=0.129 Sum_probs=111.7
Q ss_pred eeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCC-----CcEEEEEccCcc---ee--eeeccccCCeEEEE
Q 014475 61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR---LL--KKWHAHYRAVTCLV 129 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~---~~--~~~~~~~~~i~~~~ 129 (424)
..+.++|..+.+...... +...........++.+++.|+.+ ..+.+||+.+.+ -. ..+.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 478888887765432221 11111111222357777888765 359999988765 22 22222222222233
Q ss_pred EccCCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----C
Q 014475 130 FSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----R 199 (424)
Q Consensus 130 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~ 199 (424)
+ +++.++.|+.++ .+.+||+.+. ....+......... .++ ...++ ..++.|+.+ .
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~~~~~~ 175 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNID---------QWSMLGDMQTAREG-AGL-VVASG--VIYCLGGYDGLNILN 175 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTT---------EEEEEEECSSCCBS-CEE-EEETT--EEEEECCBCSSCBCC
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCC---------eEEECCCCCCCccc-ceE-EEECC--EEEEECCCCCCcccc
Confidence 3 577777777543 5788888652 22222222211111 112 22244 677777654 4
Q ss_pred cEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCe
Q 014475 200 TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (424)
Q Consensus 200 ~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i 272 (424)
.+..||+.+.+-...-. .+..-.+++. -++.+++.|+.+ ..+.+||+.+.. +..+..+.......
T Consensus 176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 176 SVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYV 247 (301)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred eEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccce
Confidence 58899988765433222 1111112222 256777777654 468999998764 33333222222222
Q ss_pred EEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475 273 TCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (424)
Q Consensus 273 ~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~ 301 (424)
.++. ..+.+++.|+.+ ..+.+||+.+.+
T Consensus 248 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 248 GATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred eEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2222 246777777765 357888887653
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.96 E-value=0.0086 Score=53.23 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=159.8
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
..|.+-|+..+....+..-. --+.-.+|..+.+|.-. ..++.|+|+++.+.++.+.-. ..|.-=.|-.+. .|+..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~--AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lV 122 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALV 122 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC--CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEE
T ss_pred CeEEEEECCCCCcceecccc--cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEE
Confidence 58888898876654333221 12445678888777754 578999999999888877643 456666776444 34443
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeecCCc----CceeEEEEEEcCceeEEEEEe-------CCCcEEEEecCCC
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT----LRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG 209 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~ 209 (424)
+ +..|+-|+++. ...+.+.+..|. ..|..-..+++. ++++..+ -.|.+.+|..+.+
T Consensus 123 T-~taVyHWsi~~----------~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 123 T-DNAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp C-SSEEEEEESSS----------SCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred c-CCeeEEecccC----------CCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecccc
Confidence 3 44799999964 223344444432 344444444444 6665433 2467889988755
Q ss_pred ceeeeeecCcceeEEEECCC--C-CEEEEEeC---CCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-
Q 014475 210 RLLRNIVFPSVIDAIALDPA--E-HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST- 279 (424)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~- 279 (424)
.....-.|-.....+.+.-+ . ..++.+.. .+++++.++.........+..+.+..+. .-.+-..++..++
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k 269 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence 43222223333323222211 1 23333333 3789999996642112222222222222 2245567888888
Q ss_pred CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
...+..-..-|.|.+||+.++.++..-+-...+|...+-.....-++.....|.|.--.++...
T Consensus 270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 7888888899999999999999999887777777766666555555555567766655555443
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.96 E-value=0.015 Score=55.68 Aligned_cols=281 Identities=11% Similarity=-0.030 Sum_probs=148.5
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeee
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 117 (424)
...++ +.++++.|..+....+.|...+++......... .......+++..+ ..+++-...+.|...|..+++....
T Consensus 173 P~Gla--ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 173 PNGLT--LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp EEEEE--EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CcEEE--EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 34455 888766666665444889999987654432211 2233457777655 4555555667899888877754433
Q ss_pred eccccCCeEE-------------------------EEE-----------ccCC---------------cEEEEeeCCCcE
Q 014475 118 WHAHYRAVTC-------------------------LVF-----------SEDG---------------SFLISGSEDGCV 146 (424)
Q Consensus 118 ~~~~~~~i~~-------------------------~~~-----------~~~~---------------~~l~s~~~dg~i 146 (424)
+......... +++ +|.| .+|+.+ ..+.|
T Consensus 250 i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i 328 (619)
T 3s94_A 250 IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDL 328 (619)
T ss_dssp CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCE
T ss_pred EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccce
Confidence 2211111111 111 1110 112222 12334
Q ss_pred EEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee-cCcceeEEE
Q 014475 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (424)
+..++.... ......... .-..+.++++.+.+. ..+++-...+.|..+++........+. .-.....++
T Consensus 329 ~~i~l~~~~--------~~~~~~~~~-~l~~~~~ld~d~~~~-~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA 398 (619)
T 3s94_A 329 RRISLDTPD--------FTDIVLQLE-DIRHAIAIDYDPVEG-YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA 398 (619)
T ss_dssp EEEESSSTT--------CCCEECCCS-CCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEecCCCc--------cceeEEecc-ccCccEEEEEEcCCC-eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence 444443210 000010111 123456777877442 455555567889999887544333332 224677899
Q ss_pred ECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCc
Q 014475 226 LDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHN 301 (424)
Q Consensus 226 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~ 301 (424)
+.+.+. ++++-+..+.|.+.+++.... .. .....-.....+++.| ...|..+. ..+.|...++. |.
T Consensus 399 vD~~~~~lY~tD~~~~~I~v~~~~G~~~-------~~--l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~ 468 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEVTRLNGTMR-------KI--LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GS 468 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred EecccCcEEEEeCCCCcEEEEeCCCCeE-------EE--EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CC
Confidence 987544 555555678899999876421 11 1122345678999998 44444443 34667777765 33
Q ss_pred EEEEE-eccCCCeeEEEEEecCceeeec-cCCCceeeccCCCCC
Q 014475 302 IVRMF-RLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQ 343 (424)
Q Consensus 302 ~~~~~-~~~~~~v~~l~~s~~~~~l~~~-~~d~~i~iw~~~~~~ 343 (424)
....+ ...-..-+.|++++++..|..+ +..+.|...++.+..
T Consensus 469 ~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 469 DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 23333 2233467889999876666444 445667777776543
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.95 E-value=0.00056 Score=58.81 Aligned_cols=156 Identities=8% Similarity=0.034 Sum_probs=102.1
Q ss_pred CeeEEEECCCCCEEEEe-cCCCcEEEEEccCcceeee-ecc----cc--CCeEEEEE---ccCCcEEEEee---------
Q 014475 82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKK-WHA----HY--RAVTCLVF---SEDGSFLISGS--------- 141 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~-~~~----~~--~~i~~~~~---~~~~~~l~s~~--------- 141 (424)
-..+++|.+....|..+ -..+.|..|+...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 44678898754445444 4789999999875543322 222 11 13578999 68877777543
Q ss_pred ----CCCcEEEEeCC---cccchhcccccccceEEeecC-----------CcCceeEEEEEEcCceeEEEEEeCC-CcEE
Q 014475 142 ----EDGCVRIWSLL---TVFEECESQRASHLYLHSFTG-----------HTLRITDIVIGYGGVSATIVSASED-RTCK 202 (424)
Q Consensus 142 ----~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~l~~~~~d-~~v~ 202 (424)
.+..|..+|+. ++. ......+.. ......+++..++| +..++++.. +.|.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~---------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G--naYVt~s~~~~~I~ 162 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSK---------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG--NSYVAFALGMPAIA 162 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCC---------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS--CEEEEEEESSCEEE
T ss_pred cccCCCCEEEEEcCCcCCCCC---------EEEEecCccccccccccccccccCCceeEECCCC--CEEEeCCCCCCeEE
Confidence 25779999987 422 111112111 11347788888887 788888887 8888
Q ss_pred EEecCCCceeeeee--c-----CcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 203 VWSLLKGRLLRNIV--F-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 203 iwd~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
..+.... ....+. . ....+.++++|++..|++....|.+..+|+..
T Consensus 163 rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 163 RVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7776543 222221 1 12367999999999999987799999999984
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.92 E-value=0.017 Score=55.26 Aligned_cols=180 Identities=9% Similarity=-0.013 Sum_probs=106.4
Q ss_pred CCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeec-CCCCeeEEEECC
Q 014475 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANS 90 (424)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~ 90 (424)
...|+.-|+++......+.. ........++ |.+.+..+..+...++.|..++++......... .......+++.+
T Consensus 14 ~~~I~~i~l~~~~~~~~~~~--~~~~~~~~l~--~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~ 89 (628)
T 4a0p_A 14 RADIRRISLETNNNNVAIPL--TGVKEASALD--FDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDW 89 (628)
T ss_dssp TTEEEEEESSCTTCEEECCC--CSCSCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred CCcEEEEECCCCCcceEEEc--CCCCceEEEE--EECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEe
Confidence 36899999987654433321 1234567777 998777777665545899999988654433222 224577899987
Q ss_pred CCC-EEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEee--CCCcEEEEeCCcccchhcccccccce
Q 014475 91 HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 91 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
.+. +.++-...+.|.+.++........+.........+++.|....|..+. ..+.|...++.... ...
T Consensus 90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~ 160 (628)
T 4a0p_A 90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTT 160 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEE
T ss_pred CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEE
Confidence 544 445555667899999865433222334445679999998544454443 24677777774311 111
Q ss_pred EEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC
Q 014475 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (424)
Q Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 208 (424)
+ ...-.....+++++.+. .+.++-...+.|...|+..
T Consensus 161 l---~~~~~~P~GlalD~~~~-~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 161 L---VPNVGRANGLTIDYAKR-RLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp E---ECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTS
T ss_pred E---ECCCCCcceEEEccccC-EEEEEECCCCEEEEEcCCC
Confidence 1 11233455667766542 3333434455666666654
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0052 Score=52.88 Aligned_cols=207 Identities=8% Similarity=0.043 Sum_probs=122.8
Q ss_pred ccccCCeEEEEEccCCcEEEEee-CCCcEEEEeCCcccchhcccccccceEEeecC----C--cCceeEEEE---EEcCc
Q 014475 119 HAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG----H--TLRITDIVI---GYGGV 188 (424)
Q Consensus 119 ~~~~~~i~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~ 188 (424)
+.......++.|++....|..++ ..|+|..||...+. ...+ .+.. . ...+..+.+ .+++
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~---------~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g- 77 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS---------HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK- 77 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC---------EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe---------EEEE-ecCCccccCCCcceeeEEEEeccCCCC-
Confidence 33444556789988555555555 78999999985321 1111 1221 1 113467777 4554
Q ss_pred eeEEEEEe-------------CCCcEEEEecC---CCceeeeeecC--------------cceeEEEECCCCCEEEEEeC
Q 014475 189 SATIVSAS-------------EDRTCKVWSLL---KGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 189 ~~~l~~~~-------------~d~~v~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~ 238 (424)
.++++.. .+..|..+|+. +++.+...... .....++..++|+..++++.
T Consensus 78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~ 156 (334)
T 2p9w_A 78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL 156 (334)
T ss_dssp -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence 6666543 26779999999 78877666521 25889999999999999988
Q ss_pred C-CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcE--EEEEe-cc---C
Q 014475 239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--VRMFR-LA---K 310 (424)
Q Consensus 239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~--~~~~~-~~---~ 310 (424)
. +.|..++.+...... +.............+.|+++| ++.|++....|.|.-+|+.+... +..-. +. -
T Consensus 157 ~~~~I~rV~pdG~~~~~----~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~ 232 (334)
T 2p9w_A 157 GMPAIARVSADGKTVST----FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTL 232 (334)
T ss_dssp SSCEEEEECTTSCCEEE----EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCC
T ss_pred CCCeEEEEeCCCCEEee----eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccc
Confidence 8 887777766532100 000000011223467899999 88888777799999999885432 21110 21 1
Q ss_pred CCeeEE-EEEecCcee-eeccCCCceeeccCCC
Q 014475 311 GPVNNI-LVVRRPLYL-NLGSFSNPHTSSRRHG 341 (424)
Q Consensus 311 ~~v~~l-~~s~~~~~l-~~~~~d~~i~iw~~~~ 341 (424)
.....+ ..-.+|+.| ++....+.+.+.+..+
T Consensus 233 ~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 233 SGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 123343 333577774 4444555555555443
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.89 E-value=0.0039 Score=53.78 Aligned_cols=217 Identities=12% Similarity=0.206 Sum_probs=108.7
Q ss_pred eeEEEEECCCCceeeeec-CCCCeeEEEECCCCCEEEEecCC-----CcEEEEEccCcceee--eeccccCCeEEEEEcc
Q 014475 61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSE 132 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~ 132 (424)
..+..+|..+.+...... +..........-++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 467888887765432221 11111111112267778888754 358899987764322 22222222222333
Q ss_pred CCcEEEEeeCCC-----cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-------Cc
Q 014475 133 DGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------RT 200 (424)
Q Consensus 133 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-------~~ 200 (424)
+++.++.|+.++ .+.+||+.+. ....+..+...... .+++. .++ ..++.|+.+ ..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSN---------EWFHVAPMNTRRSS-VGVGV-VGG--LLYAVGGYDVASRQCLST 174 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTTTEECCC
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCC---------eEeecCCCCCcccC-ceEEE-ECC--EEEEEeCCCCCCCccccE
Confidence 577778887654 4677887652 11112111111111 11222 244 666766542 35
Q ss_pred EEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeE
Q 014475 201 CKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (424)
Q Consensus 201 v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (424)
+.+||+.+.+-...-. .+..-.+++. -++.+++.|+.+ ..+.+||..+.. +..+..+........
T Consensus 175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNAG 246 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCE
T ss_pred EEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccCe
Confidence 8899988765333211 1111122222 256777777654 368899987753 333332221111112
Q ss_pred EEEecCCCEEEEeCCCC-----cEEEEeCCCCc
Q 014475 274 CLAYSTGDLLISGSEDG-----MVRVWDPITHN 301 (424)
Q Consensus 274 ~~~~~~~~~l~t~~~dg-----~i~iwd~~~~~ 301 (424)
++...+.+++.|+.++ .+.+||+.+.+
T Consensus 247 -~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 -VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2222367777777553 47888877654
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.87 E-value=0.0057 Score=52.86 Aligned_cols=227 Identities=10% Similarity=0.047 Sum_probs=113.6
Q ss_pred CCEEEEecC--CCcEEEEEccCccee--eeeccccCCeEEEEEccCCcEEEEeeCC----CcEEEEeCCcccchhccccc
Q 014475 92 GTYIAGGGQ--SGDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 92 ~~~l~~~~~--dg~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~ 163 (424)
+.+++.|+. ...+.+||..+++-. ..+.........+.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~--------- 80 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD--------- 80 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT---------
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC---------
Confidence 345556654 356999998876432 222222222223332 57777888754 56888888652
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC------CcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~ 235 (424)
....+..+...... ..+...++ ..++.|+.+ ..+.+||+.+.+-...-. .+..-.+++. -++++++.
T Consensus 81 ~W~~~~~~p~~r~~--~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~ 155 (306)
T 3ii7_A 81 SWYSKLGPPTPRDS--LAACAAEG--KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVC 155 (306)
T ss_dssp EEEEEECCSSCCBS--CEEEEETT--EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEE
T ss_pred eEEECCCCCccccc--eeEEEECC--EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEE
Confidence 12222222211111 11122344 677777765 458899988765333222 1111122222 25666666
Q ss_pred EeC---------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475 236 GSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (424)
Q Consensus 236 ~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~ 301 (424)
|+. -..+.+||..+.. +..+..+......-. +....+.+++.|+.+ ..+.+||+.+.+
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKNHG-LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhcce-EEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 653 3458899988764 333332222112222 222246777777754 358899988764
Q ss_pred EEEEEeccCCCeeEEEEEecCceeeeccCCC-----ceeeccCCCC
Q 014475 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSN-----PHTSSRRHGS 342 (424)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~-----~i~iw~~~~~ 342 (424)
-...-..........+..-+++.++.|+.++ .+..+|..+.
T Consensus 228 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 228 WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 2221111111111122223677778887553 3555665543
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.85 E-value=0.011 Score=52.25 Aligned_cols=239 Identities=12% Similarity=0.027 Sum_probs=122.9
Q ss_pred CCeeEEEECCCCC-EEEEecCCCcEEEEEccCccee---eee----ccccCCeEEEEEccC----CcEEEEeeC------
Q 014475 81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLL---KKW----HAHYRAVTCLVFSED----GSFLISGSE------ 142 (424)
Q Consensus 81 ~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~---~~~----~~~~~~i~~~~~~~~----~~~l~s~~~------ 142 (424)
.....|+|.|+|+ ++++ ...|.|++++.. +... ..+ .........++++|+ +.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4568999999999 5555 567899999853 3321 111 112345789999995 444444332
Q ss_pred -CCcEEEEeCCcccchhcccccccceEEeec---CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEe
Q 014475 143 -DGCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWS 205 (424)
Q Consensus 143 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd 205 (424)
...|..|++........ .....+..+. ........++|.|++ .+.++.+. .|.|.-+|
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 23466666543110000 0011111111 111223579999987 55555433 24566667
Q ss_pred cCCCc------------eeeeee-cCcceeEEEECCCCCEEEEEeCC--CcEEEEEcCCCCCCC----------------
Q 014475 206 LLKGR------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPST---------------- 254 (424)
Q Consensus 206 ~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~---------------- 254 (424)
....- ....+. .-.....++|+|....|+++... +.=.|.-+..+..-.
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 64320 111222 22457889999943344443322 111222222211100
Q ss_pred ------CCcCceeeeeecccCcCeEEEEecC--------CCEEEEeCCCCcEEEEeCCCCcEEEEEe---ccCCCeeEEE
Q 014475 255 ------SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRMFR---LAKGPVNNIL 317 (424)
Q Consensus 255 ------~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~l~t~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~ 317 (424)
......++..+. +...+..+.|.. +.++++.-..+.|...++..++.+.... .....+..++
T Consensus 251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 000011122222 234567777752 5677766677888888877665443322 2235789999
Q ss_pred EEecCceeee
Q 014475 318 VVRRPLYLNL 327 (424)
Q Consensus 318 ~s~~~~~l~~ 327 (424)
+.|||.+.++
T Consensus 330 ~~pdG~lyv~ 339 (353)
T 2g8s_A 330 TGPDGYLYVL 339 (353)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCcEEEE
Confidence 9999986664
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.80 E-value=0.014 Score=50.41 Aligned_cols=215 Identities=10% Similarity=0.089 Sum_probs=111.8
Q ss_pred eeEEEEECCCCceeeeec-C--CCCeeEEEECCCCCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEc
Q 014475 61 GSILYWSWSKPQVEVKSL-P--AEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFS 131 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~-~--~~~v~~~~~s~~~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~ 131 (424)
..+.+||..+.+-..... + .....++. -++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-
Confidence 578889988765432221 1 11112222 367777888755 568999988764322 22222222222333
Q ss_pred cCCcEEEEeeCC------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------
Q 014475 132 EDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-------- 197 (424)
Q Consensus 132 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-------- 197 (424)
+++.++.|+.+ ..+.+||+.+.. ...+..+...... .++ ...++ ..++.|+.
T Consensus 101 -~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---------W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 101 -EGKIYTSGGSEVGNSALYLFECYDTRTES---------WHTKPSMLTQRCS-HGM-VEANG--LIYVCGGSLGNNVSGR 166 (306)
T ss_dssp -TTEEEEECCBBTTBSCCCCEEEEETTTTE---------EEEECCCSSCCBS-CEE-EEETT--EEEEECCEESCTTTCE
T ss_pred -CCEEEEECCCCCCCcEeeeEEEEeCCCCc---------eEeCCCCcCCcce-eEE-EEECC--EEEEECCCCCCCCccc
Confidence 57777887765 458888986521 1111111111111 111 22344 66666653
Q ss_pred -CCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccC
Q 014475 198 -DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (424)
Q Consensus 198 -d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
-..+.+||+.+.+-...-. .+..-.+++.. ++++++.|+.+ ..+.+||+.+.. +..+..+....
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r 238 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKG 238 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCB
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCc
Confidence 3458899988765332222 11111222222 56677776643 468899988764 33333332222
Q ss_pred cCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475 270 KAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (424)
Q Consensus 270 ~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~ 301 (424)
....++.+ .+.+++.|+.+ ..+.+||+.+.+
T Consensus 239 ~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred cceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22233333 46778888754 468889987753
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.80 E-value=0.0047 Score=53.52 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=107.8
Q ss_pred CCCCEEEEecCC----CcEEEEEccCcceee--eeccccCCeEEEEEccCCcEEEEeeC----C-----CcEEEEeCCcc
Q 014475 90 SHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE----D-----GCVRIWSLLTV 154 (424)
Q Consensus 90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~----d-----g~i~iwd~~~~ 154 (424)
-++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++..++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356667777632 358899987764322 22211111222222 5677777775 2 35788888652
Q ss_pred cchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-----CcEEEEecCCCceeeeee--cCcceeEEEEC
Q 014475 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALD 227 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~ 227 (424)
. ...+..+......- +++ ..++ ..++.|+.+ ..+.+||+.+.+-...-. .+..-.+++..
T Consensus 101 ~---------W~~~~~~p~~r~~~-~~~-~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 101 Q---------WSPCAPMSVPRNRI-GVG-VIDG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp E---------EEECCCCSSCCBTC-EEE-EETT--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred e---------EeECCCCCcCcccc-EEE-EECC--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 1 11111111111111 112 2244 677776643 358889987765332222 11111122222
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeC
Q 014475 228 PAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDP 297 (424)
Q Consensus 228 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~ 297 (424)
++.+++.|+.+ ..+.+||+.+.. +..+..+........++.+ .+.+++.|+.+ ..+.+||+
T Consensus 168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 -NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEET
T ss_pred -CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeC
Confidence 56677777654 468899987754 2323222222222222222 46777777754 56899998
Q ss_pred CCCcEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 298 ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
.+.+-...-..........+..-+++.++.|+.++
T Consensus 239 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 239 ETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred CCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 87643221111111111222233677778877654
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.71 E-value=0.016 Score=50.34 Aligned_cols=225 Identities=11% Similarity=0.004 Sum_probs=113.3
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCC-----C-----ceeEEEEECCCC
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-----S-----SGSILYWSWSKP 71 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----~-----~g~i~vwd~~~~ 71 (424)
|.+++.|+ ..+.+||..+++-.. .. ...+.....+.. ...+++.++.+|. . ...+.+||..+.
T Consensus 5 ~~l~~~GG---~~~~~yd~~~~~W~~-~~-~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 5 DLIFMISE---EGAVAYDPAANECYC-AS-LSSQVPKNHVSL--VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEEEET---TEEEEEETTTTEEEE-EE-CCCCSCSSEEEE--ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred eEEEEEcC---CceEEECCCCCeEec-CC-CCCCCCccceEE--EEECCEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 45566666 479999999887543 22 111111222222 3356777777763 1 123778888776
Q ss_pred ceeeeecCCC---CeeEEEECCCCCEEEEecCC--------CcEEEEEccCccee--eeeccccCCeEEEEEccCCcEEE
Q 014475 72 QVEVKSLPAE---PIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLI 138 (424)
Q Consensus 72 ~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d--------g~v~iwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~ 138 (424)
+......... ....+.+ ++.+++.|+.+ ..+.+||+.+.+-. ..+.........+. .+++.++
T Consensus 78 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv 153 (315)
T 4asc_A 78 EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYV 153 (315)
T ss_dssp EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEE
T ss_pred eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEE
Confidence 5432211111 1112222 56777777742 35899999876422 22222222222222 3567777
Q ss_pred EeeC-C-----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC-----cEEEEecC
Q 014475 139 SGSE-D-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLL 207 (424)
Q Consensus 139 s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~-----~v~iwd~~ 207 (424)
.|+. + ..+.+||+.+.. ...+..+...... .+ +...++ ..++.|+.++ .+.+||+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~---------W~~~~~~p~~r~~-~~-~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFE---------WKELAPMQTARSL-FG-ATVHDG--RIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTE---------EEECCCCSSCCBS-CE-EEEETT--EEEEEEEECSSSEEEEEEEEETT
T ss_pred EeCCCCCCcccceEEEEeCCCCe---------EEECCCCCCchhc-eE-EEEECC--EEEEEeccCCCCccceEEEEECC
Confidence 7776 2 358889886521 1111111111111 11 222244 7777777654 48889988
Q ss_pred CCceeeeee--cCcceeEEEECCCCCEEEEEeCC--------------CcEEEEEcCCCC
Q 014475 208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD--------------GSIYIAALNAES 251 (424)
Q Consensus 208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~ 251 (424)
+.+-...-. .+..-.+++.. ++++++.|+.+ ..+.+||+.+..
T Consensus 221 ~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 221 DNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 764333222 11111222222 56677777653 236778877653
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.70 E-value=0.0055 Score=53.04 Aligned_cols=229 Identities=10% Similarity=0.090 Sum_probs=114.8
Q ss_pred cCCCccccCCCC---ceeEEEEECCCCceeeeec-CCCCe-eEEEECCCCCEEEEecC----C-----CcEEEEEccCcc
Q 014475 48 ASSQLREQPSAS---SGSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQ----S-----GDIYMWEVASGR 113 (424)
Q Consensus 48 ~~~~~l~~~~~~---~g~i~vwd~~~~~~~~~~~-~~~~v-~~~~~s~~~~~l~~~~~----d-----g~v~iwd~~~~~ 113 (424)
-++..++.+|.. -..+.++|..+.+...... +.... .++. ..++.+++.|+. + ..+.+||+.+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 345555555521 1478889987765433221 11111 1222 226777777776 2 458899987764
Q ss_pred eee--eeccccCCeEEEEEccCCcEEEEeeCC-----CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 114 LLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 114 ~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
-.. .+.........+.+ +++.++.|+.+ ..+.+||+.+.. ...+..+......- +++. .+
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~---------W~~~~~~p~~r~~~-~~~~-~~ 168 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE---------WHLVAPMLTRRIGV-GVAV-LN 168 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE---------EEECCCCSSCCBSC-EEEE-ET
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe---------EeECCCCCccccce-EEEE-EC
Confidence 322 22222222223333 57777777644 357888886521 11111111111111 1222 24
Q ss_pred CceeEEEEEeCC-----CcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCC
Q 014475 187 GVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPST 254 (424)
Q Consensus 187 ~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 254 (424)
+ ..++.|+.+ ..+.+||+.+.+-...-. .+..-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 169 ~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~--- 242 (308)
T 1zgk_A 169 R--LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET--- 242 (308)
T ss_dssp T--EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE---
T ss_pred C--EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc---
Confidence 4 677777654 458899987765332211 11111222222 66777777654 468999988764
Q ss_pred CCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCCc
Q 014475 255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (424)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~~ 301 (424)
+..+..+........ ++...+.+++.|+.+ ..+.+||+.+.+
T Consensus 243 ----W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 243 ----WTFVAPMKHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ----EEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ----EEECCCCCCCccceE-EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 333332222112222 222236777777754 346777877653
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.61 E-value=0.031 Score=49.06 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=126.1
Q ss_pred CCeeEEEECCCCCEEEEec------------CCCcEEEEEccCcc-eeeee--cc-----ccCCeEEEEEcc--CCc-EE
Q 014475 81 EPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGR-LLKKW--HA-----HYRAVTCLVFSE--DGS-FL 137 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~------------~dg~v~iwd~~~~~-~~~~~--~~-----~~~~i~~~~~~~--~~~-~l 137 (424)
.....+...|+|..+++++ .+|.|.++|+.+.. ....+ .+ .......+.+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3456777788876655542 68999999987431 11222 22 234677788766 343 34
Q ss_pred EEe-eC--CCcEEEEeCCcccchhcccccccceEEeecCC-cCceeEEEEEEcCceeEEEEEe-----------------
Q 014475 138 ISG-SE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSAS----------------- 196 (424)
Q Consensus 138 ~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~----------------- 196 (424)
+++ .. +.++.+|++.... .....+..+.+. -...+++.+.+++ .+.++..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~-------~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCeEEEEEEECCC-------CEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccC
Confidence 433 32 4577787774321 112233444432 3457889999988 6666543
Q ss_pred CCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEE
Q 014475 197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 197 ~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 275 (424)
..|.|..+|. ++.......-...+.++|+|+++.++++. ..+.|+.|+++..... .....+ ......-.+
T Consensus 201 ~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l------~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 201 AWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL------TPLRVL-SFDTLVDNI 271 (355)
T ss_dssp CCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE------EEEEEE-ECSSEEEEE
T ss_pred CccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE------ecCEEE-eCCCCCceE
Confidence 1244555554 33332233345678999999998887765 5678999999743211 111122 224556778
Q ss_pred EecC--CCEEEEeCCC-CcEEEEeCC--CCcEEEEEec---cCCCeeEEEEEecCcee
Q 014475 276 AYST--GDLLISGSED-GMVRVWDPI--THNIVRMFRL---AKGPVNNILVVRRPLYL 325 (424)
Q Consensus 276 ~~~~--~~~l~t~~~d-g~i~iwd~~--~~~~~~~~~~---~~~~v~~l~~s~~~~~l 325 (424)
++.+ |++.+++..+ +.|..|+.. .+..+..++. -...+..+ |..||+.|
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l 328 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVL 328 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred EEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence 8876 5666655433 345555544 2555555552 12233333 44567654
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.61 E-value=0.028 Score=48.75 Aligned_cols=214 Identities=7% Similarity=0.058 Sum_probs=105.3
Q ss_pred EEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeC-----C------CcEEEEeCCcccchhccc
Q 014475 94 YIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSE-----D------GCVRIWSLLTVFEECESQ 161 (424)
Q Consensus 94 ~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~ 161 (424)
+++.|+ ..+.+||+.+++-.. .+..............+++.++.|+. . ..+..||..+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~------ 78 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE------ 78 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE------
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe------
Confidence 445555 579999998876432 22211122233333447778888873 1 126778876521
Q ss_pred ccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC--------CcEEEEecCCCceeeeee--cCcceeEEEECCCCC
Q 014475 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH 231 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~ 231 (424)
...+..+...... .+++. .++ ..++.|+.+ ..+.+||+.+.+-...-. .+..-.+++. .+++
T Consensus 79 ---W~~~~~~p~~r~~-~~~~~-~~~--~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 150 (315)
T 4asc_A 79 ---WLGMPPLPSPRCL-FGLGE-ALN--SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDL 150 (315)
T ss_dssp ---EEECCCBSSCEES-CEEEE-ETT--EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE
T ss_pred ---EEECCCCCcchhc-eeEEE-ECC--EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCE
Confidence 1111111111001 11122 244 677777632 458899988765322212 1111122222 3566
Q ss_pred EEEEEeC-C-----CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCC-----cEEEEeCCCC
Q 014475 232 VFYAGSR-D-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG-----MVRVWDPITH 300 (424)
Q Consensus 232 ~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg-----~i~iwd~~~~ 300 (424)
+++.|+. + ..+.+||..+.. +..+..+........++ ...+.+++.|+.++ .+.+||+.+.
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7777765 2 468899988754 23333222211222222 22467777777554 5888998876
Q ss_pred cEEEEEeccCCCeeEEEEEecCceeeeccCC
Q 014475 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (424)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 331 (424)
+-...-..........+..-+++.++.|+.+
T Consensus 223 ~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 223 KWAPFEAFPQERSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEEEEEE
T ss_pred eEEECCCCCCcccceeEEEECCEEEEECCcc
Confidence 4332211111222222233466777777764
No 320
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.57 E-value=0.0076 Score=53.39 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=115.4
Q ss_pred cCCCccccCCCCceeEEEEECCCCceeeeec---C-CC--CeeEEEECCCCCEEEEecC-C---------CcEEEEEccC
Q 014475 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AE--PIKPIAANSHGTYIAGGGQ-S---------GDIYMWEVAS 111 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~---~-~~--~v~~~~~s~~~~~l~~~~~-d---------g~v~iwd~~~ 111 (424)
.+++.++.+|.+...+.++|.......+... + .. ...++.+ ++.+++.|+. + ..+.+||+.+
T Consensus 18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 3677777777665788999987422222211 1 11 1122222 5777777776 2 4689999987
Q ss_pred cceee--eec-cccCCeEEEEEccCCcEEEEeeCC---------------------------------------CcEEEE
Q 014475 112 GRLLK--KWH-AHYRAVTCLVFSEDGSFLISGSED---------------------------------------GCVRIW 149 (424)
Q Consensus 112 ~~~~~--~~~-~~~~~i~~~~~~~~~~~l~s~~~d---------------------------------------g~i~iw 149 (424)
.+-.. .+. .......++. .+++.++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 64322 222 1112222233 467788888754 468888
Q ss_pred eCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC------CCcEEEEec--CCCceee--eeecCc
Q 014475 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSL--LKGRLLR--NIVFPS 219 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------d~~v~iwd~--~~~~~~~--~~~~~~ 219 (424)
|+.+. ....+..+......-.+++. .++ ..++.|+. ...+..||+ .+.+-.. .+..+.
T Consensus 174 d~~~~---------~W~~~~~~p~~~~~~~~~~~-~~~--~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~ 241 (357)
T 2uvk_A 174 DPSTQ---------QWSYAGESPWYGTAGAAVVN-KGD--KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD 241 (357)
T ss_dssp ETTTT---------EEEEEEECSSCCCBSCEEEE-ETT--EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred eCCCC---------cEEECCCCCCCCcccccEEE-ECC--EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence 88652 22222222211111012222 233 66666653 345777876 3333221 111111
Q ss_pred c-eeEEEECCCCCEEEEEeCC----------------------CcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEE
Q 014475 220 V-IDAIALDPAEHVFYAGSRD----------------------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (424)
Q Consensus 220 ~-i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (424)
. ....+...++.+++.|+.+ ..+.+||+.+.. +..+..+......-.++.
T Consensus 242 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~ 314 (357)
T 2uvk_A 242 GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------WDKSGELSQGRAYGVSLP 314 (357)
T ss_dssp CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------CEEEEECSSCCBSSEEEE
T ss_pred ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------eeeCCCCCCCcccceeEE
Confidence 1 1111222356677776632 257789988754 444444433222222332
Q ss_pred ecCCCEEEEeCCCC------cEEEEeCCCCcEEEEE
Q 014475 277 YSTGDLLISGSEDG------MVRVWDPITHNIVRMF 306 (424)
Q Consensus 277 ~~~~~~l~t~~~dg------~i~iwd~~~~~~~~~~ 306 (424)
..+.+++.|+.++ .|.++++++++.+...
T Consensus 315 -~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 315 -WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp -ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred -eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 2377888887543 3556687777665543
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.54 E-value=0.0086 Score=61.33 Aligned_cols=264 Identities=10% Similarity=0.074 Sum_probs=145.8
Q ss_pred eeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEe
Q 014475 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 61 g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
..|.|-|+..+....+..- .--+.-.+|..+.+|.-. ..++.|+|+++...+..+.- ..+|.-=.|-.+. .|+..
T Consensus 48 ~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lV 122 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV 122 (1630)
T ss_pred ceEEEEECCCCCCcccccc--cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEE
Confidence 5788888887654422211 112344678777777754 57899999999888777664 3456666776443 34433
Q ss_pred eCCCcEEEEeCCcccchhcccccccceEEeecCC----cCceeEEEEEEcCceeEEEEEe-------CCCcEEEEecCCC
Q 014475 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG 209 (424)
Q Consensus 141 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~ 209 (424)
+ +..|.-|++..... +.+.+..| ...|..-..+++. ++++..+ -.|.+.+|..+.+
T Consensus 123 T-~~aVyHW~~~~~s~----------P~k~fdR~~~L~~~QIinY~~d~~~--kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 123 T-DNAVYHWSMEGESQ----------PVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred c-CCeEEEeccCCCCc----------cHHHHhcchhcccCeeEEeeeCCCC--CeEEEEeeccCCCcccceeeeeecccc
Confidence 3 34799999964222 22222222 3455555555555 6666433 3578889987654
Q ss_pred ceeeeeecCcceeEEEEC--CC-CCEEEEEe---CCCcEEEEEcCCCCCCCCCcCceeeeeec---ccCcCeEEEEecC-
Q 014475 210 RLLRNIVFPSVIDAIALD--PA-EHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST- 279 (424)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~- 279 (424)
.....-.|-+....+... +. ...++.+. ..+++++.++.........+..+.+..+. .-..-..++..++
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 322111122222222111 11 12222222 13689999986541111122112111111 1234456778888
Q ss_pred CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCCC
Q 014475 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (424)
Q Consensus 280 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~ 342 (424)
...+..-+.-|.|.++|+.++.++..-+-...+|...+-++...-++.....|.|.--.+...
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 777888888999999999999988765544555554444443333444445555544444433
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.49 E-value=0.0053 Score=54.49 Aligned_cols=151 Identities=12% Similarity=0.137 Sum_probs=93.4
Q ss_pred cCCCccccCCCCceeEEEEECCCC-ceeeeecC----CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce--------
Q 014475 48 ASSQLREQPSASSGSILYWSWSKP-QVEVKSLP----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------- 114 (424)
Q Consensus 48 ~~~~~l~~~~~~~g~i~vwd~~~~-~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-------- 114 (424)
.+|..++++-. +.||.-++... ........ ...|..+..||+|++||..+. ..|.|-.+..+..
T Consensus 30 ~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEET--TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEEC--CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 45555555543 67888787633 22222222 336888999999999999865 4789888863310
Q ss_pred ----eeeecc------ccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475 115 ----LKKWHA------HYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (424)
Q Consensus 115 ----~~~~~~------~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (424)
.+.++- ...+|..+.|+| ++..|++-..|+.|++||+......-. ...+.............|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 112221 246799999999 566899999999999999976221111 000111112223344678888
Q ss_pred EEEEcCceeEEEE--EeCCCcEEEE
Q 014475 182 VIGYGGVSATIVS--ASEDRTCKVW 204 (424)
Q Consensus 182 ~~~~~~~~~~l~~--~~~d~~v~iw 204 (424)
+|..++ -.|.. .+++|.|.-.
T Consensus 186 ~Fg~~~--lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDG--LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTS--SCEEEEECTTSCEEEEE
T ss_pred EEcCCC--cEEEEEecCCCCCEEEE
Confidence 888866 45555 4477776644
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.46 E-value=0.036 Score=48.07 Aligned_cols=216 Identities=9% Similarity=0.100 Sum_probs=102.7
Q ss_pred CEEEEecCCCcEEEEEccCcceee-eeccccCCeEEEEEccCCcEEEEeeC----CC-------cEEEEeCCcccchhcc
Q 014475 93 TYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSE----DG-------CVRIWSLLTVFEECES 160 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~ 160 (424)
.+++.|+. .+..||..+++-.. .+..............++..++.|+. ++ .+..||..+..
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~----- 89 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE----- 89 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-----
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-----
Confidence 34555553 48899998776433 11111112222333456777788773 12 16677875521
Q ss_pred cccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCC-------CcEEEEecCCCceeeeeecC--cceeEEEECCCCC
Q 014475 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------RTCKVWSLLKGRLLRNIVFP--SVIDAIALDPAEH 231 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~--~~i~~~~~~~~~~ 231 (424)
...+..+...... .+++. .++ ..++.|+.+ ..+.+||+.+.+-...-..+ ..-.+++. .+++
T Consensus 90 ----W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 160 (318)
T 2woz_A 90 ----WVGLPPLPSARCL-FGLGE-VDD--KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM 160 (318)
T ss_dssp ----EEECSCBSSCBCS-CEEEE-ETT--EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE
T ss_pred ----EEECCCCCccccc-cceEE-ECC--EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE
Confidence 1111111111111 11222 244 677777754 24788888776533322211 11112222 3666
Q ss_pred EEEEEeC------CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCC-----CcEEEEeCCCC
Q 014475 232 VFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH 300 (424)
Q Consensus 232 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d-----g~i~iwd~~~~ 300 (424)
+++.|+. -..+.+||..+.. +..+..+........ ++...+.+++.|+.+ ..+.+||+.+.
T Consensus 161 iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 161 IYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCcccce-EEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 6666653 2358999988764 333332222112222 223346777777643 34778998876
Q ss_pred cEEEEEeccCCCeeEEEEEecCceeeeccCCC
Q 014475 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
+-...-..........+...+++.++.|+.++
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVSLAGSLYAIGGFAM 264 (318)
T ss_dssp CEEECCCCSSCCBSCEEEEETTEEEEECCBCC
T ss_pred eEEECCCCCCcccceEEEEECCEEEEECCeec
Confidence 42221111111112222334667777777543
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.42 E-value=0.011 Score=52.48 Aligned_cols=138 Identities=9% Similarity=0.130 Sum_probs=92.1
Q ss_pred CCcEEEEecCCCceeeeeecC----c-ceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC----cCceeeeeecc-
Q 014475 198 DRTCKVWSLLKGRLLRNIVFP----S-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLSD- 267 (424)
Q Consensus 198 d~~v~iwd~~~~~~~~~~~~~----~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~- 267 (424)
++.||.-++......+.+..+ . .+..+..+|+|.+|+..+ +..|.+..+..+...... ...+ ...+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcC
Confidence 477888888755445555543 2 688899999999999886 457999999844322111 0011 111111
Q ss_pred -----cCcCeEEEEecC----CCEEEEeCCCCcEEEEeCCCC--cEEEEEe---------ccCCCeeEEEEEecCceeee
Q 014475 268 -----HSKAVTCLAYST----GDLLISGSEDGMVRVWDPITH--NIVRMFR---------LAKGPVNNILVVRRPLYLNL 327 (424)
Q Consensus 268 -----~~~~i~~~~~~~----~~~l~t~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l~~s~~~~~l~~ 327 (424)
...+|..+.|+| +..|++-..|+.|++||+... ++. .++ .....|.+++|.+++-.|-.
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 357899999999 668999999999999999852 222 222 12257889999998766655
Q ss_pred --ccCCCceeecc
Q 014475 328 --GSFSNPHTSSR 338 (424)
Q Consensus 328 --~~~d~~i~iw~ 338 (424)
.+..|.|+-.-
T Consensus 197 l~~t~~GDIYAlc 209 (452)
T 3pbp_A 197 LNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTSCEEEEES
T ss_pred EecCCCCCEEEEC
Confidence 55778776544
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0082 Score=52.25 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=71.4
Q ss_pred eEEEeecCCCCCceEEEeCCCCceEEEeeCCCCCCCceEEec-ceeecCCCccccC-CCCceeEEEEECCCCceeeeec-
Q 014475 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG-QRFLASSQLREQP-SASSGSILYWSWSKPQVEVKSL- 78 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~-~~~~g~i~vwd~~~~~~~~~~~- 78 (424)
+.+++.++ .||.|.-.|.++|+.+-+++.. ....+.... .....++..++.. ..+ |.|..++..++.......
T Consensus 10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-G~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-GNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEEEE-TTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-TEEEEEETTTEEEEEEEEH
T ss_pred CCEEEEEe-CCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-CEEEEEECCCCcEEeeecc
Confidence 46778888 8999999999999999888654 111122111 0011123333333 344 999999987765443322
Q ss_pred ----CCCCeeE---EEE-----CCCCCEEEEecCCCcEEEEEccCcceeeeecc
Q 014475 79 ----PAEPIKP---IAA-----NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120 (424)
Q Consensus 79 ----~~~~v~~---~~~-----s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 120 (424)
...++.. ... +..+..+++|+.+|.+.-.|+.+|+.+..+..
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1222221 000 01456788999999999999999999988853
No 326
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.40 E-value=0.06 Score=47.49 Aligned_cols=241 Identities=12% Similarity=0.009 Sum_probs=124.9
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcc-eeeeec---cccCCeEEEEEccC----CcEEEEeeC---C----C
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH---AHYRAVTCLVFSED----GSFLISGSE---D----G 144 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~---~~~~~i~~~~~~~~----~~~l~s~~~---d----g 144 (424)
-.....++|.|+|+++++ ..+|.|++++ .+++ .+..+. ........|+++|+ +.+.++-+. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999986555 5569999997 3454 222211 12356889999997 444444332 2 5
Q ss_pred cEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCCc
Q 014475 145 CVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGR 210 (424)
Q Consensus 145 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~ 210 (424)
.|..|+......... .....+..+. ........++|.|++ .+.++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred EEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 677777643210000 0011111122 111234678999988 56555432 2456555554210
Q ss_pred -------eeeeee-cCcceeEEEECC-CCCEEEEEeCCC---cEEEEEcCCCCCCC---------CCcCceeeeeecccC
Q 014475 211 -------LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDG---SIYIAALNAESPST---------SSYGMHIIGSLSDHS 269 (424)
Q Consensus 211 -------~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~ 269 (424)
....+. .-.....++|+| ++.++++-...+ .|.+. ..+..-. ......++..+....
T Consensus 181 p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 011111 223466899999 566554432222 23332 2221000 000001222221123
Q ss_pred cCeEEEEec-------C-CCEEEEeCCCCcEEEEeCCCC-cEE--EEEe-ccCCCeeEEEEEecCceeeecc
Q 014475 270 KAVTCLAYS-------T-GDLLISGSEDGMVRVWDPITH-NIV--RMFR-LAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 270 ~~i~~~~~~-------~-~~~l~t~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
.....++|. . +.++++.-..+.|...++... +.. ..+. .....+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 456778873 3 667777667788888888753 332 2332 2245789999999997666543
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.30 E-value=0.054 Score=47.83 Aligned_cols=234 Identities=9% Similarity=-0.017 Sum_probs=108.7
Q ss_pred EEEeecCCCCCceEEEeCCC-CceEEEeeCCCCCCCceEEecceeecCCCccccCCC-C--------ceeEEEEECCCCc
Q 014475 3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-S--------SGSILYWSWSKPQ 72 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-~--------~g~i~vwd~~~~~ 72 (424)
++++-|. ....+.++|..+ ...-..+.......+.-.++ ...+++.++.+|. + -..+.+||..+.+
T Consensus 22 iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 22 VYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATS---AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp EEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEE---EEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred EEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCccceE---EEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 3444444 566799999874 22223333222011111111 2236777777776 1 1468889988765
Q ss_pred eeeeecC--CCCeeEEEECCCCCEEEEecCC---------------------------------------CcEEEEEccC
Q 014475 73 VEVKSLP--AEPIKPIAANSHGTYIAGGGQS---------------------------------------GDIYMWEVAS 111 (424)
Q Consensus 73 ~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d---------------------------------------g~v~iwd~~~ 111 (424)
-...... .......+...++++++.|+.+ ..+.+||+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 177 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTT
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCC
Confidence 4332211 1111111122467888888754 4689999877
Q ss_pred cceee--eeccccCCeEEEEEccCCcEEEEeeC------CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEE
Q 014475 112 GRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (424)
Q Consensus 112 ~~~~~--~~~~~~~~i~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (424)
.+-.. .+......-.++... +++.++.|+. ...+..||+.... .....+..+..........+.
T Consensus 178 ~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~-------~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 178 QQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNN-------LKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp TEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC----------CEEEECCCSSTTTCCBSCEEE
T ss_pred CcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCC-------CcEEecCCCCCCcccccceEE
Confidence 64322 222111110223332 5677777764 2356777762110 111111111111111111223
Q ss_pred EEcCceeEEEEEeCC----------------------CcEEEEecCCCceeee--eecCcceeEEEECCCCCEEEEEeCC
Q 014475 184 GYGGVSATIVSASED----------------------RTCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 184 ~~~~~~~~l~~~~~d----------------------~~v~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d 239 (424)
..++ .+++.|+.+ ..+.+||+.+.+-... +..+..-.+ +...++++++.|+.+
T Consensus 250 ~~~~--~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 250 ISND--SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV-SLPWNNSLLIIGGET 326 (357)
T ss_dssp EETT--EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE-EEEETTEEEEEEEEC
T ss_pred EECC--EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce-eEEeCCEEEEEeeeC
Confidence 3344 677777632 2477899876543322 222111112 222367777788754
Q ss_pred C------cEEEEEcCCCC
Q 014475 240 G------SIYIAALNAES 251 (424)
Q Consensus 240 g------~i~i~d~~~~~ 251 (424)
+ .+.++++++++
T Consensus 327 ~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp GGGCEEEEEEEEEC-CCS
T ss_pred CCCCEeeeEEEEEEcCcE
Confidence 3 35666777764
No 328
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.062 Score=47.38 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCceEEEeCCCCceE--EEeeCCCCCCCceEEecceeecC---CCccccCCCCc-----eeEEEEECCCCc-----eee
Q 014475 11 ADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLAS---SQLREQPSASS-----GSILYWSWSKPQ-----VEV 75 (424)
Q Consensus 11 ~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~-----g~i~vwd~~~~~-----~~~ 75 (424)
.+|.|.+++ .++.. ..+............++ ++|+ +..|.++.... +.|..++..... ...
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~ 124 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVL 124 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEE
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEE
Confidence 457888887 34321 11211111234566677 9998 44444443311 577788776432 111
Q ss_pred eecC-----CCCeeEEEECCCCCEEEEecC-------------CCcEEEEEccCc------------ceeeee-ccccCC
Q 014475 76 KSLP-----AEPIKPIAANSHGTYIAGGGQ-------------SGDIYMWEVASG------------RLLKKW-HAHYRA 124 (424)
Q Consensus 76 ~~~~-----~~~v~~~~~s~~~~~l~~~~~-------------dg~v~iwd~~~~------------~~~~~~-~~~~~~ 124 (424)
.... ......++|.|||.+.++.+. .|.|.-++.... .....+ .++ ..
T Consensus 125 ~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rn 203 (352)
T 2ism_A 125 DGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RN 203 (352)
T ss_dssp EEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SE
T ss_pred EeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CC
Confidence 1111 123478999999987666432 145665665420 011111 122 23
Q ss_pred eEEEEEcc-CCcEEEEeeCCCcE------EEEeCCcccc----hhcc---cccccceEEeecCCcCceeEEEEEEcCcee
Q 014475 125 VTCLVFSE-DGSFLISGSEDGCV------RIWSLLTVFE----ECES---QRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (424)
Q Consensus 125 i~~~~~~~-~~~~l~s~~~dg~i------~iwd~~~~~~----~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 190 (424)
...++|+| ++.++++-.....+ .+.-+..+.. .... ......+...+. +......+++ .++ .
T Consensus 204 p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G--~ 279 (352)
T 2ism_A 204 PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRG--D 279 (352)
T ss_dssp ECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETT--E
T ss_pred cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECC--E
Confidence 56789999 66655543322221 1222222110 0000 000011223332 2334567777 455 6
Q ss_pred EEEEEeCCCcEEEEecCCCce------eee-eecCcceeEEEECCCCCEEEEEe
Q 014475 191 TIVSASEDRTCKVWSLLKGRL------LRN-IVFPSVIDAIALDPAEHVFYAGS 237 (424)
Q Consensus 191 ~l~~~~~d~~v~iwd~~~~~~------~~~-~~~~~~i~~~~~~~~~~~l~~~~ 237 (424)
.+++.-..+.|...++..... ... +.....+..+++.|+|.++++..
T Consensus 280 l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 280 LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 666666677788887764431 111 22335788999999987666654
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.30 E-value=0.022 Score=58.48 Aligned_cols=190 Identities=10% Similarity=0.110 Sum_probs=115.3
Q ss_pred eecCCCccccCCCCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-ceeeeeccc---
Q 014475 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAH--- 121 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~--- 121 (424)
.+|..+.+|.-+. .++.|+|+++..........++|.-=.|-.+.. |+..+ +..|+.|++... .+.+.+..|
T Consensus 73 MnP~~~iiALrag--~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEecC--CeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 5677777666653 799999999877665555567777767764443 44443 347999999643 344444444
Q ss_pred -cCCeEEEEEccCCcEEEEee-------CCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce-eEE
Q 014475 122 -YRAVTCLVFSEDGSFLISGS-------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATI 192 (424)
Q Consensus 122 -~~~i~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l 192 (424)
...|..-..+++.++++..| -.|.+.+|+.+... .+.+.+|...-..+........ ..+
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------------sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------SQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------------chhhhHhHhhhheeccCCCCCCceEE
Confidence 34566667788888876443 35789999986522 2233444443333322211110 222
Q ss_pred EEEeC---CCcEEEEecCCC---ce-e----eeee-----cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCC
Q 014475 193 VSASE---DRTCKVWSLLKG---RL-L----RNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (424)
Q Consensus 193 ~~~~~---d~~v~iwd~~~~---~~-~----~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (424)
+.+.. .+.++|-++... .+ . ..+. ..+-..++..++....++.-+.-|.+++||+.++.
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence 22221 368888887543 11 1 0011 12334577788888889999999999999999974
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.26 E-value=0.085 Score=46.11 Aligned_cols=248 Identities=11% Similarity=0.000 Sum_probs=132.2
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee--eee----ccccCCeEEEEEccC----CcEEEEee--CCCcEE
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKW----HAHYRAVTCLVFSED----GSFLISGS--EDGCVR 147 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~----~~~~~~i~~~~~~~~----~~~l~s~~--~dg~i~ 147 (424)
-.....|+|.|+|.++++--..|.|++++..+++.. ..+ .........|+++|+ +.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 456789999999998877655899999986655432 112 123456899999985 44444322 344566
Q ss_pred EEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEeC-------------CCcEEEEecCCCc---
Q 014475 148 IWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGR--- 210 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~--- 210 (424)
-|.+................+..+. .....-..|.|.+++ .+.++.+. .|.|.-.+....-
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 6655431100000001111111221 122234678999988 66666442 3455555544220
Q ss_pred ----eeeeee-cCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCCCC---------CcCceeeeeecccCcCeEEE
Q 014475 211 ----LLRNIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTS---------SYGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 211 ----~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~ 275 (424)
....+. .-.....++|+|++.++++=. .++.=.|.-+..+..-.- .....++..+..+......+
T Consensus 189 nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 189 NPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp CSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 011122 223467899999877655432 233233333333221000 00011223333233466778
Q ss_pred EecCCCEEEEeCCCCcEEEEeCCCCcE----EEEEeccCCCeeEEEEEecCceeeecc
Q 014475 276 AYSTGDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGS 329 (424)
Q Consensus 276 ~~~~~~~l~t~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~ 329 (424)
+|..+.+++..-..+.|....+..... ...+.+..+.+..+...|||.++++..
T Consensus 269 ~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 269 AYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 887777777766666776666654432 222333446899999999998766543
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.20 E-value=0.2 Score=49.34 Aligned_cols=295 Identities=11% Similarity=0.072 Sum_probs=153.7
Q ss_pred ceEEEeCCCCceEEEeeC--CCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeeeecC------CCCeeE
Q 014475 14 GIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------AEPIKP 85 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~~~------~~~v~~ 85 (424)
.+..+|..+++.. .+.. ...+...|.++. ...++.+.+.. . +-+..++..+.+....... ...|.+
T Consensus 122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 195 (758)
T 3ott_A 122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSII--RTKDNQIYVGT-Y--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNS 195 (758)
T ss_dssp EEEEEETTTCCEE-EECHHHHCCSCSCEEEEE--ECTTCCEEEEE-T--TEEEEEETTTTEEEEECCCCCTTCSSCCEEE
T ss_pred cceeEeCCCCeEE-EeccCCCCcCCCeEEEEE--EcCCCCEEEEe-C--CCHhhCccCCCceEEecCCCccccccceeEE
Confidence 4677787665433 2310 111234466655 55666665533 3 3467788766554322111 234888
Q ss_pred EEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 86 ~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
+...+++..|..|+. +-+..+|..+++...........|.++...+++.+.+ |+.+ -+.+++..+.. .
T Consensus 196 i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~---------~ 263 (758)
T 3ott_A 196 LLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP---------L 263 (758)
T ss_dssp EEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC---------C
T ss_pred EEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc---------E
Confidence 888777765555554 4588889876654322112234588888887776544 4444 47888875421 1
Q ss_pred ceEEee-----cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCE
Q 014475 166 LYLHSF-----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHV 232 (424)
Q Consensus 166 ~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~ 232 (424)
...... .-....|.++....++ .|..|+..| +.++... . ....+. ....|.++.-.++|.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g---~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEH---NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTC---CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCC---CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 000000 0123457776655443 456666666 5444322 1 111111 1246888888877765
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCcCceeeee----ecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEe-
Q 014475 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR- 307 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~- 307 (424)
. +|+.+| +..++..++.... ...... ..-....|.++.-.+...|..|+. +-|..||..+++...-..
T Consensus 338 W-iGt~~G-l~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~ 410 (758)
T 3ott_A 338 W-FGGANG-LIRFTDPAGERHD----AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIV 410 (758)
T ss_dssp E-EEETTE-EEEESCTTSSCCC----CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEE
T ss_pred E-EeeCCc-ceeecccccccce----eEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecC
Confidence 4 455554 6666654421100 000000 001224588888777333444553 468999988775433211
Q ss_pred c-----cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 308 L-----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 308 ~-----~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
. ....|.++...+++.+.+ |+..+-+..++..
T Consensus 411 ~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~ 447 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKH 447 (758)
T ss_dssp CCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHH
T ss_pred CCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccc
Confidence 1 123577777777765444 5555556666543
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.018 Score=50.15 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=104.5
Q ss_pred CEEEEecCCCcEEEEEccCcceeeeeccc-cCCeEEEEEc--c-CCcEEEEe-eCCCcEEEEeCCcccchhcccccccce
Q 014475 93 TYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--E-DGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLY 167 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 167 (424)
..+++++.||.|.-.|.++|+.+.+++.. ..++....-. + ++..++.. +.||.|..++..++.........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~---- 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR---- 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc----
Confidence 46888899999999999999998887654 1233221110 1 23344443 58999999998765321110000
Q ss_pred EEeecCCcCceeE---EEE-E----EcCceeEEEEEeCCCcEEEEecCCCceeeeeecCccee--------EEEEC----
Q 014475 168 LHSFTGHTLRITD---IVI-G----YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--------AIALD---- 227 (424)
Q Consensus 168 ~~~~~~~~~~i~~---~~~-~----~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i~--------~~~~~---- 227 (424)
.+. ...++.. ..+ . ..+ ..+++|+.+|.+.-.|+++|+.+..+....+.. |....
T Consensus 87 --~lv-~~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 87 --QLV-STSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp --HHH-TTCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred --cce-eccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 000 1112211 000 0 022 788999999999999999999999887443211 11111
Q ss_pred -CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCc--CeE-EEEecC-CCEEEEeCCCCcEEEEeCCCCcE
Q 014475 228 -PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT-CLAYST-GDLLISGSEDGMVRVWDPITHNI 302 (424)
Q Consensus 228 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~i~-~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~ 302 (424)
..+..++.+..+..+.+.+ +++. . .... ......+.. ++. .-..+. +.+ +.++.||.|.-+|..+|+.
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~-~---W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA-S---YNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC-C---CCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC-e---EEEe-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 1245677777776666666 3321 1 1000 111111100 000 000011 334 4567788888888888887
Q ss_pred EE
Q 014475 303 VR 304 (424)
Q Consensus 303 ~~ 304 (424)
+.
T Consensus 235 ~W 236 (339)
T 2be1_A 235 RW 236 (339)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.089 Score=46.15 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=108.3
Q ss_pred CeEEEEEccCCcEEEEe------------eCCCcEEEEeCCcccchhcccccccceEEe--ecCCcCceeEEEEEEc--C
Q 014475 124 AVTCLVFSEDGSFLISG------------SEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRITDIVIGYG--G 187 (424)
Q Consensus 124 ~i~~~~~~~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~--~ 187 (424)
....+...|+|..++++ ..+|.|.++|+.+..... ....... +.........+.+.++ +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----~~l~~~g~~~~~~~f~PhGi~~~~d~dg 125 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----SELEIIGNTLDISSFNPHGISTFIDDDN 125 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-----EECEEECSSCCGGGCCEEEEEEEECTTC
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----EEEEccCCCCCcCceeeeeeEEEECCCC
Confidence 34566677766554444 268999999986421100 0001111 1112345666777663 3
Q ss_pred ceeEEEEEeC--CCcEEEEecCCCc-ee---eeeec--CcceeEEEECCCCCEEEEEeC-----------------CCcE
Q 014475 188 VSATIVSASE--DRTCKVWSLLKGR-LL---RNIVF--PSVIDAIALDPAEHVFYAGSR-----------------DGSI 242 (424)
Q Consensus 188 ~~~~l~~~~~--d~~v~iwd~~~~~-~~---~~~~~--~~~i~~~~~~~~~~~l~~~~~-----------------dg~i 242 (424)
...++++-.. +.++.+|++.... .. ..+.+ -...+.+.+.++|.++++... .|.+
T Consensus 126 ~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 126 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred cEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 2234444443 4678888776532 22 22222 245789999999987776541 1334
Q ss_pred EEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe-CCCCcEEEEeCCC-CcE--EEEEeccCCCeeEEE
Q 014475 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT-HNI--VRMFRLAKGPVNNIL 317 (424)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~ 317 (424)
+.+|. +. +..+...-...+.++|+| ++.|+.+ +..+.|..|++.. ++. .+.+. ..+..-.++
T Consensus 206 yr~d~--~~----------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~ 272 (355)
T 3sre_A 206 TYYSP--ND----------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNIS 272 (355)
T ss_dssp EEECT--TC----------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEE
T ss_pred EEEEC--Ce----------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEE
Confidence 44443 21 112222335578899999 6655554 5678899999863 332 23342 345667888
Q ss_pred EEe-cCceeeeccCC-Cceeecc
Q 014475 318 VVR-RPLYLNLGSFS-NPHTSSR 338 (424)
Q Consensus 318 ~s~-~~~~l~~~~~d-~~i~iw~ 338 (424)
+.+ +|.+.+++..+ +.|..|+
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCcEEEEecCCceEEEEEC
Confidence 988 58877766544 3444444
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.15 E-value=0.1 Score=45.10 Aligned_cols=216 Identities=10% Similarity=0.121 Sum_probs=106.9
Q ss_pred eEEEEECCCCceeeeecC--CCCeeEEEECCCCCEEEEecC----CC-------cEEEEEccCcceee--eeccccCCeE
Q 014475 62 SILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----SG-------DIYMWEVASGRLLK--KWHAHYRAVT 126 (424)
Q Consensus 62 ~i~vwd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~----dg-------~v~iwd~~~~~~~~--~~~~~~~~i~ 126 (424)
.+..||..+.+....... ...........++.+++.|+. ++ .+.+||..+.+-.. .+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478889887764432211 122223334457788888873 12 17788887664322 2222122222
Q ss_pred EEEEccCCcEEEEeeCC-------CcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--
Q 014475 127 CLVFSEDGSFLISGSED-------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-- 197 (424)
Q Consensus 127 ~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-- 197 (424)
.+.+ +++.++.|+.+ ..+.+||+.+. ....+..+...... .++ ...++ ..++.|+.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~-~~~~~--~iyv~GG~~~ 169 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---------KWSEVKNLPIKVYG-HNV-ISHNG--MIYCLGGKTD 169 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---------EEEEECCCSSCEES-CEE-EEETT--EEEEECCEES
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---------CEeECCCCCCcccc-cEE-EEECC--EEEEEcCCCC
Confidence 2223 57777777754 24778888652 11111111111001 111 22344 66677664
Q ss_pred ----CCcEEEEecCCCceeeeee--cCcceeEEEECCCCCEEEEEeCC-----CcEEEEEcCCCCCCCCCcCceeeeeec
Q 014475 198 ----DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLS 266 (424)
Q Consensus 198 ----d~~v~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (424)
-..+.+||+.+.+-...-. .+..-.+++. -++++++.|+.+ ..+.+||+.+.. +..+..+.
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p 241 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-------WEVMTEFP 241 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-------EEECCCCS
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-------EEECCCCC
Confidence 2358999988765332222 1111122222 256777777643 357788887754 33333332
Q ss_pred ccCcCeEEEEecCCCEEEEeCCC--------------CcEEEEeCCCCc
Q 014475 267 DHSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN 301 (424)
Q Consensus 267 ~~~~~i~~~~~~~~~~l~t~~~d--------------g~i~iwd~~~~~ 301 (424)
....... +....+.+++.|+.+ ..+.+||+.+.+
T Consensus 242 ~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 242 QERSSIS-LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp SCCBSCE-EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred CcccceE-EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2222222 222236777777754 347778877654
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.83 E-value=0.23 Score=43.78 Aligned_cols=232 Identities=12% Similarity=0.042 Sum_probs=117.3
Q ss_pred ceEEecceeecCCCccccCCCCceeEEEEECCCCceeeee-----cCCCCeeEEEECCC---CCEEEEecC----C----
Q 014475 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSH---GTYIAGGGQ----S---- 101 (424)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~~-----~~~~~v~~~~~s~~---~~~l~~~~~----d---- 101 (424)
.-..++ |.|+|+++++ ... |.|.+++.+ ++..... ........|+++|+ +..|.++.. +
T Consensus 30 ~P~~ia--~~pdG~l~V~-e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIA--PLGGGRYLVT-ERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEE--EEETTEEEEE-ETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEE--EcCCCeEEEE-eCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345666 9999985554 444 899998743 3322211 12356899999997 444544332 2
Q ss_pred CcEEEEEccCc-------cee-eeecc-ccCCeEEEEEccCCcEEEEeeC-------------CCcEEEEeCCcccchhc
Q 014475 102 GDIYMWEVASG-------RLL-KKWHA-HYRAVTCLVFSEDGSFLISGSE-------------DGCVRIWSLLTVFEECE 159 (424)
Q Consensus 102 g~v~iwd~~~~-------~~~-~~~~~-~~~~i~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~ 159 (424)
..|..|+.... +.+ ..+.. .......+.|.|+|.++++.+. .|.|.-++.........
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56777776543 111 11221 1123467999999987776543 24555555432100000
Q ss_pred ccccccceEEeecCCcCceeEEEEEE-cCceeEEEEEeCCC---cEEEEecCCCc------------------eeeee-e
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDR---TCKVWSLLKGR------------------LLRNI-V 216 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~d~---~v~iwd~~~~~------------------~~~~~-~ 216 (424)
.. ....+. ..++. ....++|++ .+ .++++-...+ .|.+.. .+. ++..+ .
T Consensus 185 pf--~~~~i~-a~G~r-np~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 185 PF--PNSPIW-SYGHR-NPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SS--TTCCEE-EECCS-CCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CC--CCCcEE-EEccC-CcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 00 000111 12232 345788888 44 3333322211 133322 111 12222 1
Q ss_pred cCcceeEEEEC-------CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeC
Q 014475 217 FPSVIDAIALD-------PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 217 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
.......+++. .++.++++....+.|...++...... ......+.+....+..+++.| +.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~-----~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV-----RKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-----EEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-----cceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 23356777774 45666666666778888888753210 001111222245688888888 76666553
No 336
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.68 E-value=0.24 Score=41.97 Aligned_cols=225 Identities=15% Similarity=0.037 Sum_probs=121.5
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhc
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 159 (424)
...|..++...... ++. . ||.|+.|-....-.+..-......|..++...+- .++. . ||.|..|-.....+...
T Consensus 23 ~~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 23 QSGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC
T ss_pred cCCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC
Confidence 34677777764433 333 4 8999999865433222212233467777775432 2333 4 89999998654221100
Q ss_pred ccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-CceeeeeecCcceeEEEECCCCCEEEEEeC
Q 014475 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (424)
+. .-...|..++.... +.+.-. +|.|..|-... +++-........|..++.-.....+ -.
T Consensus 97 -----P~------~~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~- 157 (282)
T 3qhy_B 97 -----PA------EARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK- 157 (282)
T ss_dssp -----CG------GGSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-
T ss_pred -----Cc------ccCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-
Confidence 00 01235666665443 333344 89999997654 2222111233456666654433222 23
Q ss_pred CCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEE
Q 014475 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (424)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (424)
||.++.|-.........+ ..-...|..++......++. .||.|..|-......+..-......|..++.
T Consensus 158 ~G~v~~wG~n~~gqlg~p---------~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~ 226 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTVP---------AEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS 226 (282)
T ss_dssp TTEEEEEECCTTSTTSCC---------GGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred CCEEEEecCCCCCCCCCc---------eecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence 799999987664322111 11135677777665444444 5999999976543222111112245677766
Q ss_pred EecCceeeeccCCCceeeccCCCCC
Q 014475 319 VRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 319 s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
..+....++ ||.+..|-.....
T Consensus 227 G~~h~~al~---~g~v~~wG~n~~g 248 (282)
T 3qhy_B 227 GEWYSLALK---NGKVIAWGSSRTA 248 (282)
T ss_dssp CSSCEEEEE---TTEEEEESTTCCC
T ss_pred CCCEEEEEE---CCEEEEecCCCCc
Confidence 554333333 8999999776543
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.68 E-value=0.26 Score=47.91 Aligned_cols=217 Identities=9% Similarity=0.020 Sum_probs=106.8
Q ss_pred CceEEEeCCCCceEEEe-e---CCCCCCCceEEecceeec-CCCccccCCCCc-----eeEEEEECCCCceeeeecCCC-
Q 014475 13 TGIGCWDLESGAEQLRY-K---SCASPPHGLACVGQRFLA-SSQLREQPSASS-----GSILYWSWSKPQVEVKSLPAE- 81 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~-~~~~l~~~~~~~-----g~i~vwd~~~~~~~~~~~~~~- 81 (424)
..+.++|..+++-...- . +.......-.++. ..+ +++.++.||.+. ..+.+||..+.+.........
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~ 489 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence 45888998877644322 1 0011112122222 333 777888877542 357888887765432221111
Q ss_pred -CeeEEEECCCCCEEEEecCCC--cEEEEEccCcceeee-----eccccCCeEEEEEccC-CcEEEEeeC--C-----Cc
Q 014475 82 -PIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKK-----WHAHYRAVTCLVFSED-GSFLISGSE--D-----GC 145 (424)
Q Consensus 82 -~v~~~~~s~~~~~l~~~~~dg--~v~iwd~~~~~~~~~-----~~~~~~~i~~~~~~~~-~~~l~s~~~--d-----g~ 145 (424)
.-.+++.-.++.+++.|+.++ .+.+||+.+..-... +........++.+..+ ++.++.|+. + ..
T Consensus 490 R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 112233324788888887655 699999987643221 1112222233555554 677777776 2 35
Q ss_pred EEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeC--------CCcEEEEecCCCceeeeeec
Q 014475 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------DRTCKVWSLLKGRLLRNIVF 217 (424)
Q Consensus 146 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--------d~~v~iwd~~~~~~~~~~~~ 217 (424)
+.+||+.+..- . .......+.........-.+++...++ ..++.|+. ...+.+||+.+.+-. ....
T Consensus 570 v~~yd~~~~~w--~-~~~~W~~~~~~p~~~R~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~ 643 (695)
T 2zwa_A 570 AIIFKYDAENA--T-EPITVIKKLQHPLFQRYGSQIKYITPR--KLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI 643 (695)
T ss_dssp EEEEEECTTCS--S-CCEEEEEEEECGGGCCBSCEEEEEETT--EEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC
T ss_pred EEEEEccCCcc--c-cceEEEEcCCCCCCCcccceEEEeCCC--EEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec
Confidence 88889866320 0 000011111110011111122333324 77777774 346899999877544 2222
Q ss_pred Ccce----------eEEEECCCCCEEEEEe
Q 014475 218 PSVI----------DAIALDPAEHVFYAGS 237 (424)
Q Consensus 218 ~~~i----------~~~~~~~~~~~l~~~~ 237 (424)
+... .+.+..+++++++.|+
T Consensus 644 p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp CHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred cccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence 2211 3344445556777665
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.64 E-value=0.2 Score=48.76 Aligned_cols=200 Identities=14% Similarity=0.149 Sum_probs=102.7
Q ss_pred CCCCEEEEecCC----CcEEEEEccCcceeeee--------ccccCCeEEEEEccCCcEEEEeeCCC------cEEEEeC
Q 014475 90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKW--------HAHYRAVTCLVFSEDGSFLISGSEDG------CVRIWSL 151 (424)
Q Consensus 90 ~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~s~~~dg------~i~iwd~ 151 (424)
.++.+++.|+.+ ..+.+||+.+++-...- ......-..+.+..+++.++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777777753 46889998877533221 11112223333322677888887543 4778888
Q ss_pred CcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCC--cEEEEecCCCceeeeee-----cC-cceeE
Q 014475 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIV-----FP-SVIDA 223 (424)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~-----~~-~~i~~ 223 (424)
.+. ....+..+...... .+++...++ ..++.|+.++ .+.+||+.+.+-...-. .+ ....+
T Consensus 476 ~t~---------~W~~~~~~p~~R~~-h~~~~~~~~--~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 476 KTR---------EWSMIKSLSHTRFR-HSACSLPDG--NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp TTT---------EEEECCCCSBCCBS-CEEEECTTS--CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred CCC---------cEEECCCCCCCccc-ceEEEEcCC--EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence 652 11111111111111 111221244 6777777654 68999988765332221 11 12233
Q ss_pred EEECCC-CCEEEEEeC--C-----CcEEEEEcCCCCCCCCCcCceeeeeec-ccCcCeEEEEecCCCEEEEeCC------
Q 014475 224 IALDPA-EHVFYAGSR--D-----GSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSE------ 288 (424)
Q Consensus 224 ~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~t~~~------ 288 (424)
+.+..+ +.+++.|+. + ..+.+||+.+..- .....+..+.... .......++.+..+.+++.|+.
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCC
Confidence 555554 667777765 2 3588999887642 1111122222211 1111223333332677777874
Q ss_pred --CCcEEEEeCCCCcE
Q 014475 289 --DGMVRVWDPITHNI 302 (424)
Q Consensus 289 --dg~i~iwd~~~~~~ 302 (424)
...+.+||+.+.+-
T Consensus 623 ~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 623 DRTNSIISLDPLSETL 638 (695)
T ss_dssp CTTTSEEEEETTTTEE
T ss_pred CCCCeEEEEECCCCeE
Confidence 34589999987653
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.58 E-value=0.65 Score=45.66 Aligned_cols=290 Identities=13% Similarity=0.171 Sum_probs=153.7
Q ss_pred ceEEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceeee-----ecCCCCeeEEEE
Q 014475 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAA 88 (424)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~~-----~~~~~~v~~~~~ 88 (424)
-+..+|..+++... ........|.++. . .++.+. ++.. +.+..++..+.+.... ......|.++..
T Consensus 83 Gl~~yd~~~~~f~~---~~~~~~~~i~~i~--~-~~g~lW-igt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 83 GILVYNYRADRYEQ---PETDFPTDVRTMA--L-QGDTLW-LGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp EEEEEETTTTEECC---CSCCCCSCEEEEE--E-ETTEEE-EEET--TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEE
T ss_pred CeEEEeCCCCEEEC---cccCCCceEEEEE--e-cCCcEE-EEcC--CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEE
Confidence 37788877654321 1111223455543 3 355443 3433 3577888776654322 123457889888
Q ss_pred CCCCCEEEEecCCCcEEEEEccCcceeee-ecc----ccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 89 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
.+++.+.+. +.+| |..++..+++.... ... ....|.++...+++..|..|+. +-+..+|..+..
T Consensus 154 d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~-------- 222 (758)
T 3ott_A 154 TKDNQIYVG-TYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ-------- 222 (758)
T ss_dssp CTTCCEEEE-ETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--------
T ss_pred cCCCCEEEE-eCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--------
Confidence 888876654 4444 77888766543221 111 1234888888777665555554 458888875421
Q ss_pred ccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee--------cCcceeEEEECCCCCEEEE
Q 014475 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYA 235 (424)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~ 235 (424)
......+ ....|.++....++ .|..|+.+ -+.+++..+++...... ....|.++....+|. |.+
T Consensus 223 -~~~~~~l--~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi 294 (758)
T 3ott_A 223 -IKQTEAF--HNNSIKSLALDGNG---DLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL 294 (758)
T ss_dssp -EEEEEEE--EEEEEEEEEECTTC---CEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE
T ss_pred -EEeccCC--CCCeEEEEEEcCCC---CEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE
Confidence 1111111 12346666655443 45556644 58888877654322211 123588888887776 555
Q ss_pred EeCCCcEEEEEcCCCCCCCCCcCceeeee--e--cccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCCCc--EEEEEec-
Q 014475 236 GSRDGSIYIAALNAESPSTSSYGMHIIGS--L--SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRMFRL- 308 (424)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~--~~~~~~~- 308 (424)
|+..| +.++..... ...... . ......|.++.-.....|..|+.+| +..++..+++ ....+..
T Consensus 295 GT~~G-l~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~ 364 (758)
T 3ott_A 295 GTDYG-ISLSRYNSA--------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMG 364 (758)
T ss_dssp EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred EeCCc-ccccccCCc--------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccC
Confidence 66666 554432211 011110 0 0123468888777733444445555 6667665432 1222221
Q ss_pred ------cCCCeeEEEEEecCceeeeccCCCceeeccCCCCC
Q 014475 309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (424)
Q Consensus 309 ------~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~~~ 343 (424)
....|.++.-.++|...+ |+ ++-+..++..+.+
T Consensus 365 ~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~ 403 (758)
T 3ott_A 365 DKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQ 403 (758)
T ss_dssp CSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTE
T ss_pred CcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCc
Confidence 123578887777776544 34 3467778776543
No 340
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.25 E-value=0.72 Score=42.62 Aligned_cols=296 Identities=11% Similarity=0.078 Sum_probs=158.4
Q ss_pred EEEeecCCCCCceEEEeCCCCceEEEeeCCCC---------------------------CCCceEEecceeecCCCcccc
Q 014475 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------------------PPHGLACVGQRFLASSQLREQ 55 (424)
Q Consensus 3 ~~lat~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~l~~ 55 (424)
..+.||+ ..|.|+|+-+.+++.++.+.-... |...+..-. =..||+++..
T Consensus 71 y~f~SgG-~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfi 147 (638)
T 3sbq_A 71 YGFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFI 147 (638)
T ss_dssp EEEEECG-GGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEE
T ss_pred EEEeecC-cCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEE
Confidence 3567888 999999999999999988754321 111111111 1135666666
Q ss_pred CCCCceeEEEEECCCCcee--eeecCCCCeeEEEEC--CCCCEEEEecCC-------CcEEEEEccCcceeeeec---cc
Q 014475 56 PSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAAN--SHGTYIAGGGQS-------GDIYMWEVASGRLLKKWH---AH 121 (424)
Q Consensus 56 ~~~~~g~i~vwd~~~~~~~--~~~~~~~~v~~~~~s--~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~---~~ 121 (424)
-......|-.-+++..+.. +.......+..++|- |+-.|++++++. |.. ..++..+....+. +.
T Consensus 148 Ndkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 148 NDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETT
T ss_pred ecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCC
Confidence 6555566777777765543 233456788899986 788888887653 221 0001111001111 10
Q ss_pred c----------CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEE------
Q 014475 122 Y----------RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------ 185 (424)
Q Consensus 122 ~----------~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------ 185 (424)
. +....+...+++++.++.+.+ .+.+........ ...=..+.|+.
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yN-------sE~~~~l~em~~------------~e~D~~~vfn~~~ie~~ 286 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYN-------SEKAFDLGGMMR------------NERDWVVVFDIHAVEAA 286 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESC-------TTCCSSHHHHTC------------SSCEEEEEEEHHHHHHH
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeec-------cccCcChhhcCc------------ccccEEEEecHHHHHHH
Confidence 0 011112222333333333221 111100000000 01111122221
Q ss_pred --cCceeEEEEEeCCC-cEEEEecCC----C-ceeeeeecCcceeEEEECCCCCEEEEEe-CCCcEEEEEcCCCCCC---
Q 014475 186 --GGVSATIVSASEDR-TCKVWSLLK----G-RLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS--- 253 (424)
Q Consensus 186 --~~~~~~l~~~~~d~-~v~iwd~~~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--- 253 (424)
++ ++- -.+| .+.+.|.+. + .....+..+.....+.++|+|+++++++ -+.++.++|++.....
T Consensus 287 vk~G--~~~---~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~ 361 (638)
T 3sbq_A 287 VKAG--DFI---TLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG 361 (638)
T ss_dssp HHTT--CCB---CCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT
T ss_pred HhcC--CeE---EECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc
Confidence 22 111 0121 478888876 2 3445556778888999999999988876 4678999999852110
Q ss_pred -CCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCC----------cEEEEEeccCCCeeEEEE---
Q 014475 254 -TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----------NIVRMFRLAKGPVNNILV--- 318 (424)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~--- 318 (424)
............. -.-.....+|.+ |....|---|..|.-|++... ..+..+..|-.+ -.+.-
T Consensus 362 k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~g 439 (638)
T 3sbq_A 362 KLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLC 439 (638)
T ss_dssp CCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTT
T ss_pred cccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCC
Confidence 0000011122222 234567788988 866667778999999998754 456667665433 33333
Q ss_pred ---EecCceeeecc
Q 014475 319 ---VRRPLYLNLGS 329 (424)
Q Consensus 319 ---s~~~~~l~~~~ 329 (424)
.|+|++|++..
T Consensus 440 et~~~dGk~lv~ln 453 (638)
T 3sbq_A 440 ETNEADGKWLVALS 453 (638)
T ss_dssp TSTTCCSCEEEEEE
T ss_pred ccCCCCccEEEEec
Confidence 47888888754
No 341
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.05 E-value=0.7 Score=40.61 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=55.2
Q ss_pred eEEecceeecCCCccccCCCCceeEEEEECCCCcee-ee------ecCCCCeeEEEECCC---CCEEEEe-cC-------
Q 014475 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK------SLPAEPIKPIAANSH---GTYIAGG-GQ------- 100 (424)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~-~~------~~~~~~v~~~~~s~~---~~~l~~~-~~------- 100 (424)
-..++ |.|+|+.+.++... |.|++++.+..... .. .........++++|+ +..|.+. ..
T Consensus 20 P~~i~--~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 20 PWALA--FLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp EEEEE--ECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred cEEEE--EcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45566 99999934444455 89999985432111 11 112346789999996 4444443 22
Q ss_pred CCcEEEEEccCc--c--eee----eec---cccCCeEEEEEccCCcEEEEeeC
Q 014475 101 SGDIYMWEVASG--R--LLK----KWH---AHYRAVTCLVFSEDGSFLISGSE 142 (424)
Q Consensus 101 dg~v~iwd~~~~--~--~~~----~~~---~~~~~i~~~~~~~~~~~l~s~~~ 142 (424)
...|..|++..+ . ... .+. ........+.|.|+|.++++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 224666666432 1 111 111 11112357999999976666543
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.79 E-value=0.15 Score=41.01 Aligned_cols=144 Identities=8% Similarity=-0.021 Sum_probs=78.6
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeeecCcc--------eeEEEECCCCCEEEEEeCCCcEEEEEcC
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV--------IDAIALDPAEHVFYAGSRDGSIYIAALN 248 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (424)
.+.+++|+|++ .+.++ .+|.+.-.+..+.....-+..... ..++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P~G--~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGG--ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTS--CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCc--cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 67799999976 54444 677777666544222111111122 478999999998887 56988877653
Q ss_pred CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc------EEEEEe-ccCCCeeEEEEEe
Q 014475 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN------IVRMFR-LAKGPVNNILVVR 320 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~s~ 320 (424)
+..... ....-...-..--..+..+.+.| +.+.+.. |+.++-+...++. ....+- ..-..-+.+.|.+
T Consensus 116 ~~~~~~--Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDN--WIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCC--HHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCc--eeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 322110 00000001111225678999999 6655555 7776544433221 111111 1222345567888
Q ss_pred cCceeeeccCCC
Q 014475 321 RPLYLNLGSFSN 332 (424)
Q Consensus 321 ~~~~l~~~~~d~ 332 (424)
++...++. ++
T Consensus 192 ~G~l~~v~--~g 201 (236)
T 1tl2_A 192 VGTLFGVQ--GG 201 (236)
T ss_dssp TSCEEEEE--TT
T ss_pred CCcEEEEe--CC
Confidence 88776665 56
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.74 E-value=0.041 Score=44.18 Aligned_cols=133 Identities=8% Similarity=-0.040 Sum_probs=79.0
Q ss_pred eEEEeecCCCCCceEEEeCCCCc------eEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCceee
Q 014475 2 ELLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV 75 (424)
Q Consensus 2 e~~lat~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~~~~ 75 (424)
|.+|++.. .| +++.=...++. ...++-.. .-..+..++ |+|+|.+.++ .+ |.+.-.+..+.....
T Consensus 4 ~~~l~~v~-~d-~~y~G~~P~~~~~~~~~~a~~iG~~--gw~~~~~la--f~P~G~LYaV--~~-G~Ly~~~~~t~~~~~ 74 (236)
T 1tl2_A 4 ESMLRGVY-QD-KFYQGTYPQNKNDNWLARATLIGKG--GWSNFKFLF--LSPGGELYGV--LN-DKIYKGTPPTHDNDN 74 (236)
T ss_dssp CCCEEEEE-TT-EEEEESCCCSTTCCHHHHSEEEESS--SCTTCSEEE--ECTTSCEEEE--ET-TEEEEESCCCSTTCC
T ss_pred ceEEEEEe-CC-cEEecCCCCCcccchhhhccccCcc--ccccceeEE--ECCCccEEEE--eC-CeEEEECCCCCCccc
Confidence 44566666 66 66666665555 12222221 123567888 9999997777 44 776666653321110
Q ss_pred eecCCCC--------eeEEEECCCCCEEEEecCCCcEEEEEccCcceee-------eeccccCCeEEEEEccCCcEEEEe
Q 014475 76 KSLPAEP--------IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-------KWHAHYRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 76 ~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~s~ 140 (424)
-...... ..++.|.|+|.+.++ .||.|+-++..+..... .-+.--..+..|.|.|+|.+.++.
T Consensus 75 W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 75 WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 0011222 488999999998888 56988877763321111 111112567999999999877776
Q ss_pred eCCCcEE
Q 014475 141 SEDGCVR 147 (424)
Q Consensus 141 ~~dg~i~ 147 (424)
|+.++
T Consensus 153 --dg~ly 157 (236)
T 1tl2_A 153 --GQQFY 157 (236)
T ss_dssp --TTEEE
T ss_pred --CCcEE
Confidence 77754
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.68 E-value=0.61 Score=42.60 Aligned_cols=109 Identities=8% Similarity=0.003 Sum_probs=60.1
Q ss_pred cCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee---------cCcceeEEEECCC---CCEEEEEeC----
Q 014475 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA---EHVFYAGSR---- 238 (424)
Q Consensus 175 ~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~---~~~l~~~~~---- 238 (424)
-...+.|+|.|++ .++++-...+.|++++..+++...... .......++++|+ +..|++...
T Consensus 26 l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3455789999987 655554433478888865554322221 1345668999995 555655542
Q ss_pred ---------CCcEEEEEcCCCCCCCCCcCceeee-eec-ccCcCeEEEEecC-CCEEEEeC
Q 014475 239 ---------DGSIYIAALNAESPSTSSYGMHIIG-SLS-DHSKAVTCLAYST-GDLLISGS 287 (424)
Q Consensus 239 ---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~-~~~l~t~~ 287 (424)
...|.-++......... ..+.+. .+. ........|+|.| +.++++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~--~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLE--KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEE--EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcC--CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 23566666543211000 011111 122 1223468899999 77777654
No 345
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=95.38 E-value=1.2 Score=38.34 Aligned_cols=207 Identities=9% Similarity=0.017 Sum_probs=114.0
Q ss_pred CCCCEEEEecCCCcEEEEEccCcceee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
|+..++++.+.+|.|+--.+...+... .++. .+.+..+........++..+..|.++-+...........
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 466778888999999988765432211 1222 234555555555667788888999877766432111000
Q ss_pred ccccc-ceEEeecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCCCC
Q 014475 161 QRASH-LYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPAEH 231 (424)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~ 231 (424)
..... .....+.. ...|..+...++ .....++..+..|.++...+..- .....+...+.+-.+.....+.
T Consensus 85 ~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 00000 00111222 234444433321 11267888899999998877432 2222233345555555545566
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCC
Q 014475 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
.++..+.+|.+..+....-..............+.. ...|.++..-+ +..+++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788899999999998876332222111122223332 34555555444 67788888899998888753
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.10 E-value=0.18 Score=46.50 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=78.8
Q ss_pred ceEEEeCCC----CceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCCc------e-------eee
Q 014475 14 GIGCWDLES----GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------V-------EVK 76 (424)
Q Consensus 14 ~i~vwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~~------~-------~~~ 76 (424)
.|.|-|.+. +..+..+-.....+.++. .+|||+++++++.-+.++.++|+++.. + ...
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~-----vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae 373 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCN-----TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE 373 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEE-----ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC
T ss_pred CeeEEccccccccCCceEEEEeCCCCCccee-----eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee
Confidence 467777765 332322222223344554 899999999999888999999987421 1 111
Q ss_pred ecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc----------ceeeeeccccCCeEEEEE------ccCCcEEEEe
Q 014475 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVF------SEDGSFLISG 140 (424)
Q Consensus 77 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~s~ 140 (424)
....-.....+|.++|....+---|.+|.-|++... ..+..+..|-.+ -.+.- .|+|++|++.
T Consensus 374 ~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 374 PELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEE
T ss_pred ccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEe
Confidence 223556788999999966666668999999999753 234444444332 22332 4688888887
Q ss_pred eC
Q 014475 141 SE 142 (424)
Q Consensus 141 ~~ 142 (424)
..
T Consensus 453 nK 454 (638)
T 3sbq_A 453 SK 454 (638)
T ss_dssp ES
T ss_pred cc
Confidence 54
No 347
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.06 E-value=2 Score=39.21 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=60.8
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCccee--eeecc------ccCCeEEEEEccC----CcEEEEeeC-----
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKWHA------HYRAVTCLVFSED----GSFLISGSE----- 142 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~------~~~~i~~~~~~~~----~~~l~s~~~----- 142 (424)
-.....|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345689999999997777544457888876555432 22221 2456779999994 444444332
Q ss_pred -------CCcEEEEeCCcccchhcccccccceEEeec-CCcCceeEEEEEEcCceeEEEEEe
Q 014475 143 -------DGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS 196 (424)
Q Consensus 143 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~ 196 (424)
...|.-++........ . .....+..+. ........|+|.+++ .+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~--~-~~~~i~~~~p~~~~H~~~~l~f~pDG--~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTL--E-KPVDLLAGLPSSKDHQSGRLVIGPDQ--KIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEE--E-EEEEEEEEECCCSSCCEEEEEECTTS--CEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCc--C-CcEEEEEcCCCCCCCCCCeEeECCCC--eEEEEEC
Confidence 1345555543211000 0 0111111122 122346789999988 5555544
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=94.62 E-value=2 Score=37.13 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred CCCCeeEEEECC---CCCEEEEecCCCcEEEEEccCcce-------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEE
Q 014475 79 PAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148 (424)
Q Consensus 79 ~~~~v~~~~~s~---~~~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~i 148 (424)
..+.|.++..-+ +..+++..+.+|.++--.+..... ...++. .+.+..+........++..+..|.+..
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEE
Confidence 355666654433 578899999999999988755322 223333 344555555555567888889999998
Q ss_pred EeCC--cccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCc-------eeeeee--c
Q 014475 149 WSLL--TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNIV--F 217 (424)
Q Consensus 149 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~--~ 217 (424)
+... ........ ........+. ....|.++...+.+ ..++..+..|.++.-.+..-. -+..+. .
T Consensus 172 f~~~~~eip~~gr~--a~Gv~~i~L~-~~d~Vv~~~~~~~~--~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~ 246 (327)
T 3uc1_A 172 FSATDEALRPMGRA--TSGVQGMRFN-IDDRLLSLNVVREG--TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDR 246 (327)
T ss_dssp EECCTTTSCCCCTT--SBCEESSCCC-TTCCEEEEEECCTT--CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCT
T ss_pred EECcccccCcCCcC--CCCeeeecCC-CCCEEEEEEEECCC--CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecC
Confidence 8886 32211110 1111111222 23456665554444 688899999999888764322 122222 1
Q ss_pred -CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
.+.+-.+....+...++..+.+|.+.-++...-
T Consensus 247 ~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 247 RRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred CCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 334444443344556777788888888877654
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.45 E-value=2.1 Score=36.58 Aligned_cols=234 Identities=9% Similarity=0.030 Sum_probs=120.1
Q ss_pred eecCCCccccCC-CCceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEecCC--------------CcEEEEEcc
Q 014475 46 FLASSQLREQPS-ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------------GDIYMWEVA 110 (424)
Q Consensus 46 ~~~~~~~l~~~~-~~~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~v~iwd~~ 110 (424)
|+.++..+.... .+++.|...+.+......... . .+--+++++.+|+-.... ..|+..++.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 445666655553 223677777766554332221 1 234567888888877543 357777776
Q ss_pred CcceeeeeccccCCeEEEEEccCCcEEEEee--CCC--cEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 111 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
.++... +.. .. +..|+++++.|+-.. .++ .|...++.. .. ...+..+.. ..++++
T Consensus 97 g~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG---------s~---~~~lt~~~~----~~~~~~ 155 (302)
T 3s25_A 97 GHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG---------EE---KKKIKNHYL----FTCNTS 155 (302)
T ss_dssp SCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS---------CC---CEEEESSCC----CCSEEE
T ss_pred CCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC---------CC---eEEEeCCCc----eEeeEE
Confidence 554322 221 22 236777888887665 334 454455532 11 112222222 345777
Q ss_pred CceeEEE-EEeCCCcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCcCceeee
Q 014475 187 GVSATIV-SASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIG 263 (424)
Q Consensus 187 ~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~ 263 (424)
+ +.|+ +......|..-++..+.....+. +... ..+.|++.+|+-....+ .|..-+++... ..
T Consensus 156 g--~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~----------~~ 220 (302)
T 3s25_A 156 D--RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN----------PV 220 (302)
T ss_dssp T--TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC----------CE
T ss_pred C--CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC----------eE
Confidence 7 4444 44446778888887665433332 2222 23558888887665443 56666665543 11
Q ss_pred eecccCcCeEEEEecC-CCEEEEeC--CCCcEEEEeCCCCcEEEEEeccCCCeeEEEEEecCceeeec
Q 014475 264 SLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 264 ~~~~~~~~i~~~~~~~-~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (424)
.+.. ..+. .++| ++.|.-++ ..+.|..-++. |...+.+... .+. .+++.+.+|.-.
T Consensus 221 ~Lt~--~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~--~~~--~i~i~~d~Iy~t 279 (302)
T 3s25_A 221 VLTE--ANIE--HYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAKG--EFC--NINVTSQYVYFT 279 (302)
T ss_dssp ECSC--SCEE--EEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEES--CEE--EEEECSSEEEEE
T ss_pred EEeC--CCcc--eEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeCC--ccc--eEEEeCCEEEEE
Confidence 2211 2232 3666 77666542 34566666665 3333333321 233 445556666443
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.39 E-value=2 Score=36.22 Aligned_cols=204 Identities=15% Similarity=0.114 Sum_probs=110.1
Q ss_pred eeEEEEECCCC-ceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCcceeeeeccccCCeEEEEEccCCcEEEE
Q 014475 61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (424)
Q Consensus 61 g~i~vwd~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 139 (424)
|.|..|-.... +.-........|..++...+.. ++. . ||.|+.|-....-.+..-..-...|..++...+ +.+.
T Consensus 42 G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~a 116 (282)
T 3qhy_B 42 GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA 116 (282)
T ss_dssp TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEE
T ss_pred CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEE
Confidence 99999986543 2222222234677777765433 333 4 899999986543222211112346777777643 3344
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceee-eeecC
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-NIVFP 218 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~ 218 (424)
-. ||.|..|-.....+.. + .......|..++.... ..++ -. ||.|..|-......+. .....
T Consensus 117 l~-~G~v~~wG~n~~gqlg---------~--~~~~~~~i~~i~~G~~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~ 179 (282)
T 3qhy_B 117 LK-DGKVIAWGDDSDGQTT---------V--PAEAQSGVTALDGGVY---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQ 179 (282)
T ss_dssp EE-TTEEEEEECCTTSTTS---------C--CGGGGSSEEEEEECSS---EEEE-EE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred Ee-CCeEEEecCCCCCcCC---------C--CccCCCCeEEEEcccC---EEEE-EE-CCEEEEecCCCCCCCCCceecC
Confidence 44 8999999765421110 0 0011234555544332 2333 34 7999999765422221 11123
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCC
Q 014475 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI 298 (424)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~ 298 (424)
..|..++.-.... ++. .+|.++.|-.........+ ......|..++......++.. ||.|..|-..
T Consensus 180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p---------~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVP---------TEALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCC---------GGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCC---------cccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 4566666644333 333 5999999987664322111 011235777776554444444 9999999766
Q ss_pred CC
Q 014475 299 TH 300 (424)
Q Consensus 299 ~~ 300 (424)
..
T Consensus 246 ~~ 247 (282)
T 3qhy_B 246 RT 247 (282)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.02 E-value=3.5 Score=37.61 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=59.4
Q ss_pred CCeeEEEECCCCC-EEEEecCCCcEEEEEccCcc---eeeeec---------cccCCeEEEEEccC----CcEEEEeeCC
Q 014475 81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGR---LLKKWH---------AHYRAVTCLVFSED----GSFLISGSED 143 (424)
Q Consensus 81 ~~v~~~~~s~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~---------~~~~~i~~~~~~~~----~~~l~s~~~d 143 (424)
.....|+|.|+|. .++++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999986 34445678999999753221 122221 11356789999985 4444443321
Q ss_pred ------------CcEEEEeCCcccchhcccccccceEEee--cCCcCceeEEEEEEcCceeEEEEEeC
Q 014475 144 ------------GCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE 197 (424)
Q Consensus 144 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~ 197 (424)
..|.-|.+....... ........+..+ .........|+|.|++ .+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG--~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQ-VDLRTARVFLEVAELHRKHLGGQLLFGPDG--FLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTS-BCGGGCEEEEEEEESSSSSCEEEEEECTTS--CEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCc-cCCCCceEEEEcCCCCCcccCCcEeECCCC--cEEEEeCC
Confidence 134445554321100 000011111111 1222345789999988 56555544
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.79 E-value=3 Score=36.01 Aligned_cols=243 Identities=13% Similarity=0.002 Sum_probs=131.0
Q ss_pred CEEEEecCCCcEEEEEccCcce---------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccc
Q 014475 93 TYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (424)
Q Consensus 93 ~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 163 (424)
..+++.+.+|.|+--.+.+.+. -..++ ....+..+........++.-+..|.++-........... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~ 80 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TA 80 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cC
Confidence 4567778888888765433211 11222 234455555555555666667788776655433211100 01
Q ss_pred ccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCce-------eeeeecCcceeEEEECCCCCE
Q 014475 164 SHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALDPAEHV 232 (424)
Q Consensus 164 ~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~i~~~~~~~~~~~ 232 (424)
...++. .+. ....|..+....+ .+...++..+.+|.++.-.+..... ...+...+.+..+........
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 81 RGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD 159 (327)
T ss_dssp CCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred CCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence 111111 122 2344555544332 1227899999999999988654221 122333455555555555667
Q ss_pred EEEEeCCCcEEEEEcC--CCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------E
Q 014475 233 FYAGSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-------I 302 (424)
Q Consensus 233 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~-------~ 302 (424)
++..+..|.+..+... .-..............+. ....|.++...+ +..++..+..|.++.-.+.... -
T Consensus 160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G 238 (327)
T 3uc1_A 160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 238 (327)
T ss_dssp EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence 8888999999988887 322211111111122232 234566665555 7789999999999888754322 1
Q ss_pred EEEEe--ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 303 VRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 303 ~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
+..++ .-.+.+-.+....+...++..+.+|.+.-+...
T Consensus 239 ~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 239 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 22222 213455555555455566666777776666554
No 353
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=93.50 E-value=3.2 Score=35.46 Aligned_cols=246 Identities=12% Similarity=0.034 Sum_probs=126.9
Q ss_pred CCCCEEEEecCCCcEEEEEccCcceee---------eeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 160 (424)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........++..+..|.++-+...........
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 456678888899999877664432211 12222 34444444445566777778888776665432211110
Q ss_pred cccccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc-------eeeeeecCcceeEEEECCC
Q 014475 161 QRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALDPA 229 (424)
Q Consensus 161 ~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~i~~~~~~~~ 229 (424)
....++. .+. ....|.++...++ .+...++..+..|.++.-.+..-. ....+...+.+-.+.....
T Consensus 80 --a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 80 --ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp --SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred --CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 1111111 122 2334555543221 112578899999999998764221 1122223345555544445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEeCCCCcEEEEeCCCCc-------
Q 014475 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN------- 301 (424)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~------- 301 (424)
...++..+.+|.+..++...-..............+. ....|.++...+ +..+++.+..|.++-.++....
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 5678888899998888876543222111111112232 234566665444 6678888889999888764211
Q ss_pred --EEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 302 --IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 302 --~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
....+..-.+.+-.+....+...|+..+.+|.+.-....
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111222223455555444444555555666665544443
No 354
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=93.29 E-value=4 Score=35.91 Aligned_cols=246 Identities=12% Similarity=-0.012 Sum_probs=129.2
Q ss_pred ECCCCCEEEEecCCCcEEEEEccCc---------ceeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchh
Q 014475 88 ANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (424)
Q Consensus 88 ~s~~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 158 (424)
+-|+..++++.+.+|.|+--.+.+. .....++ ....+..+........++..+..|.++-+.........
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 3467788999999999998665332 1122233 34556666665556667777888887766654322111
Q ss_pred cccccccceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc-------eeeeeecCcceeEEEEC
Q 014475 159 ESQRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALD 227 (424)
Q Consensus 159 ~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~i~~~~~~ 227 (424)
.. ....++. .+. ....|.++....+ ....+++.++..|.++.-.+.... ....+...+.+-.+...
T Consensus 82 r~--a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 82 SN--ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370)
T ss_dssp TT--SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred cc--cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence 00 1111111 122 2345555543321 122689999999999988764322 12222333444444444
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEec-----------------------------
Q 014475 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS----------------------------- 278 (424)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------- 278 (424)
.....++..+.+|.+..++...-.........-....+.. ...|.++...
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~ 237 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK-GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAV 237 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEECCC--------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC-CCEEEEEEEeccccccccccccccccccccccccccccc
Confidence 5556788888899988888755432222111111111221 2333333222
Q ss_pred -------CCCEEEEeCCCCcEEEEeCCCCc-------EEE--EEeccCCCeeEEEEEecCceeeeccCCCceeecc
Q 014475 279 -------TGDLLISGSEDGMVRVWDPITHN-------IVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (424)
Q Consensus 279 -------~~~~l~t~~~dg~i~iwd~~~~~-------~~~--~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~ 338 (424)
.+..+++.+..|..+...+..-. =+. .+....+.+-.+.+..+...++..+..|.+.-..
T Consensus 238 ~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 238 IDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTR 313 (370)
T ss_dssp ---------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEE
T ss_pred cccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEee
Confidence 23578888889988888764321 122 2222234555554444444555555566544333
No 355
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=92.99 E-value=4 Score=35.13 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=129.9
Q ss_pred CCCCEEEEecCCCcEEEEEccCcc----eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccccccc
Q 014475 90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (424)
Q Consensus 90 ~~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 165 (424)
|+..++++.+.+|.|+--.+.+.+ ....++.. +.+..+........++..+..|.++-+........... ...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~--a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK--DLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT--SCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC--CCC
Confidence 566778888999999877654221 11223333 34555555555667777788888776665432211110 111
Q ss_pred ceEE---eecCCcCceeEEEEEEc-CceeEEEEEeCCCcEEEEecCCCc--------eeeeeecCcceeEEEECCCCCEE
Q 014475 166 LYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR--------LLRNIVFPSVIDAIALDPAEHVF 233 (424)
Q Consensus 166 ~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l 233 (424)
.++. .+. ....|.++...++ .+..+++..+..|.++.-.+..-. ....+...+.+-.+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 1111 122 2234555433332 112578899999999998874221 11222333555555554556678
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CC-EEEEeCCCCcEEEEeCCCC-------cEEE
Q 014475 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------NIVR 304 (424)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~t~~~dg~i~iwd~~~~-------~~~~ 304 (424)
+..+.+|.+..+....-..............+. ....|.++...+ +. .+++.+..|..+..++..- +-+.
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~ 237 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVV 237 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEE
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEE
Confidence 888999999998886543222211111222232 234566654434 55 7888888888887776531 1122
Q ss_pred EEe---ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 305 MFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 305 ~~~---~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
.++ .....+..+....++..++..+..|.+.-..+.
T Consensus 238 ~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 238 ILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 222 112245444333434455566666765544443
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.83 E-value=4.1 Score=34.74 Aligned_cols=175 Identities=9% Similarity=0.063 Sum_probs=95.7
Q ss_pred eecCCCccccCCCC-------------ceeEEEEECCCCceeeeecCCCCeeEEEECCCCCEEEEec--CC--CcEEEEE
Q 014475 46 FLASSQLREQPSAS-------------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QS--GDIYMWE 108 (424)
Q Consensus 46 ~~~~~~~l~~~~~~-------------~g~i~vwd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d--g~v~iwd 108 (424)
+++++.++..+... ...|+..+++..+...... .. +..|++++++|+-.. .+ ..|+..+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 66888887776543 2578888888776443322 22 236777888888765 23 3455556
Q ss_pred ccCcceeeeeccccCCeEEEEEccCCcEEEEeeC-CCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcC
Q 014475 109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (424)
Q Consensus 109 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 187 (424)
+.. .....+..+.. ..++++++.|.-.+. ...|...++.... ...+ +.+ ... ..+.|++
T Consensus 136 ~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---------~~~l--~~~---~~~-~~~~P~g 195 (302)
T 3s25_A 136 IDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS---------EALF--YDC---NCY-KPVVLDD 195 (302)
T ss_dssp TTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE---------EEEE--ECS---CEE-EEEEEET
T ss_pred CCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC---------EEEE--eCC---Ccc-ceeeecC
Confidence 543 33344433322 345677777775554 5678777775421 1111 121 111 2355777
Q ss_pred ceeEEEEEeCC--CcEEEEecCCCceeeeeecCcceeEEEECCCCCEEEEEeC--CCcEEEEEcCCC
Q 014475 188 VSATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR--DGSIYIAALNAE 250 (424)
Q Consensus 188 ~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~ 250 (424)
..|+-...+ ..|..-++..... ..+. ...+ ..++|++.+|+-+.. .+.|..-+++..
T Consensus 196 --~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 196 --TNVYYMDVNRDNAIVHVNINNPNP-VVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp --TEEEEEEGGGTTEEEEECSSSCCC-EECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred --CEEEEEEcCCCcEEEEEECCCCCe-EEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 555554433 3566666654442 2232 2223 347788888876533 356666666654
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.07 E-value=6.1 Score=35.02 Aligned_cols=225 Identities=7% Similarity=-0.018 Sum_probs=100.9
Q ss_pred CeeEEEECC-C-CCEEEEecCCCcEEEEEccCcceeeeecc-------------------ccCCeEEEEEcc-CCcEEEE
Q 014475 82 PIKPIAANS-H-GTYIAGGGQSGDIYMWEVASGRLLKKWHA-------------------HYRAVTCLVFSE-DGSFLIS 139 (424)
Q Consensus 82 ~v~~~~~s~-~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------------~~~~i~~~~~~~-~~~~l~s 139 (424)
.|.++++.| + ...+.+++..+.|...+ ..++.-..+.. ....+.+|.+.| +...+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 577899987 2 45555555555555443 22222222211 123578899987 3444555
Q ss_pred eeCCCcEEEEeCCcccchhcccccccceEEeec----CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeee
Q 014475 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (424)
Q Consensus 140 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 215 (424)
+..++.|...+ .+............ ...+. .....+.++.+.+... ..+..+...+ |...+ ..++.-..+
T Consensus 195 g~~~ggl~~s~--DgG~tW~~~~~~~~-~~~~p~~~~~~g~~~~~i~~~~~~~-~~l~vg~~~g-l~~s~-D~G~tW~~~ 268 (394)
T 3b7f_A 195 GMSSGGVFEST--DAGTDWKPLNRGCA-ANFLPDPNVEFGHDPHCVVQHPAAP-DILYQQNHCG-IYRMD-RREGVWKRI 268 (394)
T ss_dssp EEETBEEEEES--STTSSCEECCTTCC-CTTSSSSSSSSCBCEEEEEECSSST-TEEEEEETTE-EEEEE-TTTTEEECG
T ss_pred EECCCCEEEEC--CCCCCceECCCCcc-ccccCCCccccCcceeEEEECCCCC-CEEEEEcCCe-EEEeC-CCCCcceEC
Confidence 55444444332 21111000000000 00000 0012477888877533 4555565544 44333 223322222
Q ss_pred e--cC----cceeEEEECC-CCCEEEEEeC-----------CCcEEEEEcCCCCCCCCCcCceeeee-ecccCc----Ce
Q 014475 216 V--FP----SVIDAIALDP-AEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGS-LSDHSK----AV 272 (424)
Q Consensus 216 ~--~~----~~i~~~~~~~-~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~----~i 272 (424)
. .+ ..+..+.++| +...++++.. ++...+|....+... ++.+.. +..... ..
T Consensus 269 ~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~t-----W~~~~~glp~~~~~~~~~~ 343 (394)
T 3b7f_A 269 GDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGES-----WQRQDRGLPTDQAWLTVKR 343 (394)
T ss_dssp GGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSC-----CEEECBTSCCSSCCCCCCT
T ss_pred CCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCC-----ceECCCCCCCccccceEEE
Confidence 2 11 2356788887 3445555532 333456655543211 121111 111000 11
Q ss_pred EEEEecC--CCEEEEeCCCCcEEEEeCCCCcEEEEEeccCCCeeEEEEE
Q 014475 273 TCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (424)
Q Consensus 273 ~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (424)
..++++| ...|+.++.++.|..-+ ..++.-..+..+-..+.++.|.
T Consensus 344 ~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 344 QAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp BSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 3577777 35566676666554433 3344444554444567777664
No 358
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.53 E-value=7.1 Score=34.63 Aligned_cols=213 Identities=17% Similarity=0.112 Sum_probs=107.1
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-----------eeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-----------LKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVR 147 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~ 147 (424)
...+..++++......++-..||.|+.|-....-. ...+.. ....|..++.. ..+.+....+|.|.
T Consensus 104 ~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~ 181 (389)
T 3kci_A 104 HVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLY 181 (389)
T ss_dssp TSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEE
Confidence 34566677777666777678899999996543110 111111 12256666654 44566667899999
Q ss_pred EEeCCcccchhcccccc-cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c----------eeeee
Q 014475 148 IWSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI 215 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~----------~~~~~ 215 (424)
.|-.....+........ ..+..........|..++..... .+.+....+|.|..|-.... + ....+
T Consensus 182 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~--~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD--AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS--CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred EeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC--cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 99765422111110000 01111111122345555543322 45666778999999965421 1 11111
Q ss_pred ec--CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC---cCceeeeeecccCcCeEEEEecCCCEEEEeCCCC
Q 014475 216 VF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 216 ~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
.. ...|..++. .....++-..+|.|+.|-.......... ....+..........|..++.. ....+.-..||
T Consensus 260 ~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G-~~h~~al~~~G 336 (389)
T 3kci_A 260 DSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG-SLHCVCCTEDG 336 (389)
T ss_dssp GGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTC
T ss_pred cccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-cCeEEEECCCC
Confidence 11 123444443 3344555578999999987543221110 0001111111122356666654 34444456789
Q ss_pred cEEEEeCCC
Q 014475 291 MVRVWDPIT 299 (424)
Q Consensus 291 ~i~iwd~~~ 299 (424)
.|..|-...
T Consensus 337 ~v~~wG~n~ 345 (389)
T 3kci_A 337 EVYTWGDND 345 (389)
T ss_dssp CEEEEECCT
T ss_pred CEEEeeCCC
Confidence 999997653
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.07 E-value=7.9 Score=34.31 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=36.1
Q ss_pred cCCCCeeEEEECC--CCCEEEEecCCC----cEEEEEccCcceeeeec------c--------ccCCeEEEEEcc-C-Cc
Q 014475 78 LPAEPIKPIAANS--HGTYIAGGGQSG----DIYMWEVASGRLLKKWH------A--------HYRAVTCLVFSE-D-GS 135 (424)
Q Consensus 78 ~~~~~v~~~~~s~--~~~~l~~~~~dg----~v~iwd~~~~~~~~~~~------~--------~~~~i~~~~~~~-~-~~ 135 (424)
.....|.+|++.| .+.+.+ ++..| .|...+ ..++.-..+. . ....|.++++.| + ..
T Consensus 52 ~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 129 (394)
T 3b7f_A 52 FLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG 129 (394)
T ss_dssp STTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT
T ss_pred CCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC
Confidence 3456799999998 454444 44444 343332 2232212111 0 112477888986 2 45
Q ss_pred EEEEeeCCCcEEEE
Q 014475 136 FLISGSEDGCVRIW 149 (424)
Q Consensus 136 ~l~s~~~dg~i~iw 149 (424)
.+..+...+.|...
T Consensus 130 ~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 130 TWYAGTSPQGLFRS 143 (394)
T ss_dssp CEEEEEETTEEEEE
T ss_pred EEEEEecCCcEEEE
Confidence 56666555555444
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=91.02 E-value=6.8 Score=33.52 Aligned_cols=195 Identities=8% Similarity=0.029 Sum_probs=109.6
Q ss_pred ecCCCccccCCCCceeEEEEECCCCce---------eeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-----
Q 014475 47 LASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----- 112 (424)
Q Consensus 47 ~~~~~~l~~~~~~~g~i~vwd~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~----- 112 (424)
-++...+++.+.+ |.|+--....-.. .......+.+..+........++..+..|.++-.....-
T Consensus 5 i~~e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKK-GFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETT-CBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCC-CEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3455556666665 7777665432211 111123445555555555566777778888777665321
Q ss_pred ----ce---eeeeccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEE
Q 014475 113 ----RL---LKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (424)
Q Consensus 113 ----~~---~~~~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (424)
.. ...+.. ...|..+...+ +..+++..+..|.++...+....... ........+.. ...+..+.
T Consensus 84 ~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 84 ASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT-TCCEEEEE
T ss_pred cCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEEEEecCC-CCEEEEEE
Confidence 11 111222 23455554332 46678888999999999886532211 11222223333 45566665
Q ss_pred EEEcCceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 014475 183 IGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 183 ~~~~~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
..... ..++..+.+|.+..+....- .....+.....+..+..-+++..+++.+..|.....++..-
T Consensus 158 ~~~~~--~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 158 IVFKD--EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECTT--CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EeCCC--CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 55433 67888888999988887531 11222223455666666556667888899999998888654
No 361
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.48 E-value=7.6 Score=33.14 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=102.0
Q ss_pred CccccCCCCceeEEEEECCCCcee---------eeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------c
Q 014475 51 QLREQPSASSGSILYWSWSKPQVE---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------G 112 (424)
Q Consensus 51 ~~l~~~~~~~g~i~vwd~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~ 112 (424)
..+++.+.+ |.|+--.+..-+.. ......+.+..+........|+..+..|.++-+.... |
T Consensus 4 ~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQ-GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETT-SEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCC-CEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 344555555 77766655432111 1112334555544444555666667788866665522 2
Q ss_pred ceee---eeccccCCeEEEEEc---cCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEc
Q 014475 113 RLLK---KWHAHYRAVTCLVFS---EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (424)
Q Consensus 113 ~~~~---~~~~~~~~i~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 186 (424)
..+. .+. ....|..+... +++.+++..+.+|.++--.+....... ........+..+ +.+..+.....
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~----r~G~~~i~l~~~-d~lv~~~~~~~ 156 (307)
T 1zi0_A 83 RPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR----TAGKVAIKLVDG-DELIGVDLTSG 156 (307)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC----TTCEESSCCCTT-CCEEEEEEECT
T ss_pred eEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc----cCCeEEEEECCC-CEEEEEEEeCC
Confidence 2211 122 23456655442 356678899999999998875432111 111112223333 45555554444
Q ss_pred CceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 014475 187 GVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 187 ~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (424)
. ..++..+.+|.+..++...- .....+.....|..+...+++..+++.+..|..+-.++..
T Consensus 157 ~--~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 157 E--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp T--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred C--CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 3 56777888888888876421 1112233445666666555666788889999888887744
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=89.79 E-value=8 Score=32.38 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=116.7
Q ss_pred CCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEE
Q 014475 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (424)
Q Consensus 123 ~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~ 202 (424)
+.+..+.-......|+.-+..|.++--.+...... ...-+ +. ....|..+.. .+-+...++..+.+|.++
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~~~~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------SKVSL--KS-REEKIVGAFI-REKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------EECCC--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------ccccc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEE
Confidence 44555555444556666777888776554332110 00011 22 3455665543 320226899999999999
Q ss_pred EEecCCCc------eeeeeecCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCC-cCceeeeeecccCcCeEEE
Q 014475 203 VWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGSLSDHSKAVTCL 275 (424)
Q Consensus 203 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ 275 (424)
...+..-. ....+...+.+..+........++..+..|.+..+....-...... .+.. ...+.. ...|..+
T Consensus 94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~-~i~L~~-~d~vv~~ 171 (276)
T 3no0_A 94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ-GIKLEK-NDETSGL 171 (276)
T ss_dssp EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CCCCCT-TCCEEEE
T ss_pred EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-EEccCC-CCEEEEE
Confidence 98875432 2222334456666666666778888999999988887553322211 1112 223333 3456655
Q ss_pred EecC-CCEEEEeCCCCcEEEEeCCC-------CcEEEEEeccCCCeeEEEEEecCceeeeccCCCceee--ccCC
Q 014475 276 AYST-GDLLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS--SRRH 340 (424)
Q Consensus 276 ~~~~-~~~l~t~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~i--w~~~ 340 (424)
...+ +..++..+..|.++...+.. ++-+..+ ...+.+-.+....+...++..+.+|.+.. ++..
T Consensus 172 ~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 172 RIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5444 77888889999998887643 2223333 23445555544444456666677777666 6554
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=89.42 E-value=9.6 Score=32.77 Aligned_cols=193 Identities=9% Similarity=0.024 Sum_probs=103.1
Q ss_pred CCCccccCCCCceeEEEEECCC----CceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC---------ccee
Q 014475 49 SSQLREQPSASSGSILYWSWSK----PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLL 115 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~---------~~~~ 115 (424)
+...+++.+.+ |.|+--.... +.........+.+..+........|+..+..|.++-+.... |..+
T Consensus 4 ~e~~~v~lT~~-G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 4 SEDVIVTVTKD-GYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp CCEEEEEEETT-CEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCcEEEEEeCC-CEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 44445555555 7776554321 11111222344555555555556666667788876665522 2211
Q ss_pred ee---eccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEEEEEEcCce
Q 014475 116 KK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (424)
Q Consensus 116 ~~---~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 189 (424)
.. +. ....|..+...+ ++.+++.++.+|.++--.+........ ........+... +.+..+......
T Consensus 83 ~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r---~~G~~ai~l~e~-d~lv~~~~~~~~-- 155 (323)
T 1wp5_A 83 ANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY---SKPLTGINLKND-DQVVDVHLTDGM-- 155 (323)
T ss_dssp GGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC---SSCEECSCCCTT-CCEEEEEEECSC--
T ss_pred hhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc---cCceEEEEeCCC-CEEEEEEEeCCC--
Confidence 11 22 223455544333 256789999999999998754322110 111111222322 455455444433
Q ss_pred eEEEEEeCCCcEEEEecCCCc---------eeeeeecCcceeEEEECCCCC-EEEEEeCCCcEEEEEcCC
Q 014475 190 ATIVSASEDRTCKVWSLLKGR---------LLRNIVFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNA 249 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~---------~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 249 (424)
..++..+.+|.+..++...-. ....+.....|.++...+++. .+++.+..|..+..++..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 567788888988888764311 111222344555554434444 788888888888877765
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=89.16 E-value=11 Score=33.27 Aligned_cols=250 Identities=11% Similarity=0.060 Sum_probs=125.5
Q ss_pred CeeEEEECCCCCEEEEecCCCcEEEEEccCcce-----------eeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEEEE
Q 014475 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-----------LKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~iw 149 (424)
.+..++.. ....+.-..||.|+.|-....-. ...+.. ....+..++.+.-..+.+.-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34444432 34444556789999996543210 111111 22345566776666677777889999999
Q ss_pred eCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-c----------eeeeee-
Q 014475 150 SLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNIV- 216 (424)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~----------~~~~~~- 216 (424)
-.....+..............+.. ....|..++.. . .+.+....+|.|..|-.... + ....+.
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--G--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--S--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--c--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc
Confidence 764422111100000001111111 12245555443 3 45666778999999975421 1 011111
Q ss_pred -cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc--Cceeeeeecc-cCcCeEEEEecCCCEEEEeCCCCcE
Q 014475 217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMV 292 (424)
Q Consensus 217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~l~t~~~dg~i 292 (424)
....+..++........++-..+|.|+.|-........... .......+.. ....|..++.. ..+.+.-..||.|
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-~~hs~alt~~G~v 286 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG-SQFSVALTKSGAV 286 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE-TTEEEEEETTSCE
T ss_pred cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC-CCEEEEEeCCCeE
Confidence 12346666655444566667789999999865432211100 0011111111 12346666554 3444445679999
Q ss_pred EEEeCCCCc-----------EEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 293 RVWDPITHN-----------IVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 293 ~iwd~~~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
..|-....- ....+.. ....|..++.-. ...+.-..||.|..|-..
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 999754311 1111211 123455555433 334445689999999765
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=89.02 E-value=11 Score=33.04 Aligned_cols=196 Identities=10% Similarity=0.044 Sum_probs=110.4
Q ss_pred eecCCCccccCCCCceeEEEEECCC---------CceeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEccC-----
Q 014475 46 FLASSQLREQPSASSGSILYWSWSK---------PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----- 111 (424)
Q Consensus 46 ~~~~~~~l~~~~~~~g~i~vwd~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~----- 111 (424)
+-|+...+++.+.+ |.|+--.+.. +.........+.+..+........|+..+..|.++-+....
T Consensus 3 lI~~e~~~v~lT~~-GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHA-GYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESS-CEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCC-CEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 44666777777777 8888754321 12223334456666666666666677677788877665422
Q ss_pred ----cceeee---eccccCCeEEEEEcc---CCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcCceeEE
Q 014475 112 ----GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (424)
Q Consensus 112 ----~~~~~~---~~~~~~~i~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (424)
|..+.. +. ....|.++...+ ++.+|+.++..|.++.-.+....... ........+.. ...+..+
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~----~~G~~ai~L~~-~d~lv~v 155 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL----ARGKIAINLDE-GDALVGV 155 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC----TTCEESSCCCT-TCCEEEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc----CCceEEEEeCC-CCEEEEE
Confidence 222211 22 234566554432 45689999999999999875533211 11111222332 3445455
Q ss_pred EEEEcCceeEEEEEeCCCcEEEEecCCC---------ceeeeeecCcceeEEEECC------------------------
Q 014475 182 VIGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNIVFPSVIDAIALDP------------------------ 228 (424)
Q Consensus 182 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~---------~~~~~~~~~~~i~~~~~~~------------------------ 228 (424)
...... ..++..+..|.+..++...- -....+.....|.++...+
T Consensus 156 ~~~~~~--~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~ 233 (370)
T 3l6v_A 156 ALTDGD--RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGA 233 (370)
T ss_dssp EEECSC--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------
T ss_pred EEeCCC--ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccc
Confidence 444433 56777888888888875421 1111222334455444433
Q ss_pred -----------CCCEEEEEeCCCcEEEEEcCCC
Q 014475 229 -----------AEHVFYAGSRDGSIYIAALNAE 250 (424)
Q Consensus 229 -----------~~~~l~~~~~dg~i~i~d~~~~ 250 (424)
.+..+++.+..|..+...+..-
T Consensus 234 ~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 234 EPAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp -------------CEEEEEETTSEEEEEEGGGS
T ss_pred cccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence 3457888888888888877653
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.46 E-value=26 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=31.4
Q ss_pred CeEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
.+.+++..+ ..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 456666666 7799999999999999999999998765
No 367
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=85.91 E-value=17 Score=31.63 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=83.0
Q ss_pred cccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEe----ecCCcCceeEEEEEEc--CceeEEE
Q 014475 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDIVIGYG--GVSATIV 193 (424)
Q Consensus 120 ~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~--~~~~~l~ 193 (424)
..-.....|+|.|++.++++--..|.|++++..++.. ..+.. ..........|+++|+ .++.+.+
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~---------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK---------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE---------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 3445678999999998776655489999998643211 11111 1234566788999885 1113333
Q ss_pred EE--eCCCcEEEEecCCC----------cee-eeee--cCcceeEEEECCCCCEEEEEeC-------------CCcEEEE
Q 014475 194 SA--SEDRTCKVWSLLKG----------RLL-RNIV--FPSVIDAIALDPAEHVFYAGSR-------------DGSIYIA 245 (424)
Q Consensus 194 ~~--~~d~~v~iwd~~~~----------~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~ 245 (424)
+- ..++.|.-|.+..+ +.+ ..+. .......+.|.|+|.++++.+. .|.|.-.
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 32 23456666665541 111 1121 1234567999999987766442 3555555
Q ss_pred EcCCCCCCCCCcCceeeeeecccCcCeEEEEecC-CCEEEEe
Q 014475 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (424)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~t~ 286 (424)
+.+...+...++....+ ...+|. ....++|+| +.++++-
T Consensus 180 ~~dG~ip~~nPf~~~~i-~a~G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPV-YSYGHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTSSBCTTCSSTTCCE-EEBCCS-BCCEEEECTTCCEEEEE
T ss_pred eCCCCccCCCCCCCCeE-EeeCCC-CcceEEECCCCCEEEEe
Confidence 55433211111111111 122443 456788988 6655543
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=85.77 E-value=32 Score=34.73 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=79.1
Q ss_pred CCCcEEEEecCCCc-------eeeeeecCcce--eEEEEC--CC--CCEEEEEeCCCcEEEEEcCCCCC----CCCCcCc
Q 014475 197 EDRTCKVWSLLKGR-------LLRNIVFPSVI--DAIALD--PA--EHVFYAGSRDGSIYIAALNAESP----STSSYGM 259 (424)
Q Consensus 197 ~d~~v~iwd~~~~~-------~~~~~~~~~~i--~~~~~~--~~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~ 259 (424)
.||++.+-++.-.+ ..-.+..+.+| .+++|. ++ .-.+.+-+..|.++-..++..-- ......+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~l~~~Fp~~i~p~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W 159 (950)
T 4gq2_M 80 QNRTLTIFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDW 159 (950)
T ss_dssp TTTEEEEEECCCSCCSSCCCCEEEEEECSSCEEEEEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTS
T ss_pred cCCeEEEEEeeccCCccccCCeEEEEECCCcccCCceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCccccccccc
Confidence 45666666554211 12233445444 356664 33 33456678888888887764210 0011112
Q ss_pred eeeeeec--ccCcCeEEEEecCCCEEEEeCCCCcEEE-EeCCCCcE-------------EEE-E-----ec---cCCCee
Q 014475 260 HIIGSLS--DHSKAVTCLAYSTGDLLISGSEDGMVRV-WDPITHNI-------------VRM-F-----RL---AKGPVN 314 (424)
Q Consensus 260 ~~~~~~~--~~~~~i~~~~~~~~~~l~t~~~dg~i~i-wd~~~~~~-------------~~~-~-----~~---~~~~v~ 314 (424)
....... ....+..-.+.++...+++-.+.|-+++ ++-..+.. ++. + +. ....+.
T Consensus 160 ~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~ 239 (950)
T 4gq2_M 160 CLCYRPISFLNQKPDLMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTII 239 (950)
T ss_dssp EEEECCGGGTTSCEEEEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEE
T ss_pred cccccCcCccCCCceEEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEE
Confidence 1111111 1223444455566777777766666776 33332211 111 0 11 112466
Q ss_pred EEEEEecCceeeeccCCCceeeccCCCCCC
Q 014475 315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (424)
Q Consensus 315 ~l~~s~~~~~l~~~~~d~~i~iw~~~~~~~ 344 (424)
+++..++..++++-+.|+++|+|++.++++
T Consensus 240 ~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 240 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred EEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 777778888999999999999999988765
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.58 E-value=31 Score=33.49 Aligned_cols=246 Identities=9% Similarity=0.065 Sum_probs=118.9
Q ss_pred eeEEE-ECCCCCEEEEec----CC-CcEEEEEccCcceeee-ec-cccC------CeEEEEEccCCcEEEEee-------
Q 014475 83 IKPIA-ANSHGTYIAGGG----QS-GDIYMWEVASGRLLKK-WH-AHYR------AVTCLVFSEDGSFLISGS------- 141 (424)
Q Consensus 83 v~~~~-~s~~~~~l~~~~----~d-g~v~iwd~~~~~~~~~-~~-~~~~------~i~~~~~~~~~~~l~s~~------- 141 (424)
...+. ++|++++++.+- .| ..++++|+.+++.+.. +. .-.. ....++|..++..+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 889999887652 22 3599999999977632 22 0000 113457874444444321
Q ss_pred ---CCCcEEEEeCCcccchhcccccccceEEeecCCcCce-eEEEEEEcCcee---EEEEEeCC---CcEEEEecCC--C
Q 014475 142 ---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSA---TIVSASED---RTCKVWSLLK--G 209 (424)
Q Consensus 142 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~---~l~~~~~d---~~v~iwd~~~--~ 209 (424)
....|+.|.+-+... .. ...+.+....+ .....+.++... .+++.+.+ ..+.+.|... +
T Consensus 211 ~~~~~~~v~~~~~Gt~~~-------~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 281 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIE-------KA--KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL 281 (711)
T ss_dssp TTSSBCEEEEEETTSCGG-------GC--EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred cCCCCCEEEEEECCCChH-------HC--eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence 124588888755221 11 12222222222 122333444211 34443322 3455666543 3
Q ss_pred ceeeeeecCcceeEEEECCCCCEEEEE----------eCCCcEEEEEcCCCCCCC-CCcCceeeeeecccCcCeEEEEec
Q 014475 210 RLLRNIVFPSVIDAIALDPAEHVFYAG----------SRDGSIYIAALNAESPST-SSYGMHIIGSLSDHSKAVTCLAYS 278 (424)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~ 278 (424)
+ ...+..+.... +..+.++.+++.. ...+.|...++....... ....++.+. .......+..+.+.
T Consensus 282 ~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 282 K-LQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT 358 (711)
T ss_dssp E-EEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC
T ss_pred c-ceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE
Confidence 2 22233222222 2233455544422 246778899987642100 000112111 12234567788888
Q ss_pred CCCEEEEeCCCCc--EEEEeCCCCc-EEEE-Eecc-CCCeeEEEEEecCceee-ecc---CCCceeeccCC
Q 014475 279 TGDLLISGSEDGM--VRVWDPITHN-IVRM-FRLA-KGPVNNILVVRRPLYLN-LGS---FSNPHTSSRRH 340 (424)
Q Consensus 279 ~~~~l~t~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~~l~-~~~---~d~~i~iw~~~ 340 (424)
.+.++++...++. |.++|+.+++ .... +... .+.+.....++++..++ +.+ .-+.+..++..
T Consensus 359 ~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 359 KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 7778888777765 6777776664 2333 3322 24566666666665443 222 22345555543
No 370
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.47 E-value=13 Score=33.80 Aligned_cols=111 Identities=10% Similarity=0.005 Sum_probs=61.3
Q ss_pred cceeEEEECCCCC-EEEEEeCCCcEEEEEcCCCCCCCCCcCceeee-eec-----ccCcCeEEEEecCC-----CEEEEe
Q 014475 219 SVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLS-----DHSKAVTCLAYSTG-----DLLISG 286 (424)
Q Consensus 219 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~-----~~l~t~ 286 (424)
.....|+|.|++. .++++...|.|++++......... ..-+. .+. ........|+++|+ .+.++-
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~---~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP---YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC---SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee---ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 4567899999986 566677889999997543211000 00010 011 12466789999982 333332
Q ss_pred CC--C----------CcEEEEeCCC----------CcEEEEEe--ccCCCeeEEEEEecCceeeeccCCC
Q 014475 287 SE--D----------GMVRVWDPIT----------HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSN 332 (424)
Q Consensus 287 ~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~d~ 332 (424)
+. + ..|.-|.+.. .+.+..+. .....-..|.|.|||.+.++.++.+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 21 1 1344455432 23333433 1223568999999997776655443
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=83.28 E-value=29 Score=32.72 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=42.5
Q ss_pred CeEEEEecC-CCEEEEeCCC------------CcEEEEeCCCCcEEEEEeccC-CCeeEEEEEecCceeeec
Q 014475 271 AVTCLAYST-GDLLISGSED------------GMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 271 ~i~~~~~~~-~~~l~t~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~ 328 (424)
..-.|+|+| +++++.-..+ ..+.+.+..+++..+-+.++. .+++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346689999 8877765432 246667777888777666654 589999999999888664
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.21 E-value=19 Score=30.07 Aligned_cols=211 Identities=10% Similarity=-0.014 Sum_probs=116.4
Q ss_pred eeCCCCCCCceEEecceeecCCCccccCCCCceeEEE---EECCCCce-eeeecCCCCeeEEEECC--CCCEEEEecCCC
Q 014475 29 YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILY---WSWSKPQV-EVKSLPAEPIKPIAANS--HGTYIAGGGQSG 102 (424)
Q Consensus 29 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~v---wd~~~~~~-~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg 102 (424)
.++|....+.+..+. .......++.-+.. |.++- |++..... .+ ....+.|..+.. + +..+++..+.+|
T Consensus 16 ~~g~~~~gD~~~~~~--~~~t~~~ll~fT~~-G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 16 VEELPLEKAPVVNIL--RVPFTEGLFLVSNR-GRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKG 90 (276)
T ss_dssp GGGCCSSCCCEEEEE--EEETTSCEEEEETT-SEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred ccCCCCCCCeEEEEE--EECCCCEEEEEcCC-CeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence 334433344555444 33444444444444 65554 33322111 12 334566777654 4 467899999999
Q ss_pred cEEEEEccCcc------eeeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCCcC
Q 014475 103 DIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (424)
Q Consensus 103 ~v~iwd~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (424)
.++-..+..-. ....++. .+.+..+........++..+..|.+..+........... ........+.. ..
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~--a~Gv~~i~L~~-~d 166 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPG--ARGVQGIKLEK-ND 166 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTT--CCCEECCCCCT-TC
T ss_pred EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCC--CCCEEEEccCC-CC
Confidence 99999876532 1222332 345666655555667888899999988887553321111 11111122332 34
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-------ceeeeeecCcceeEEEECCCCCEEEEEeCCCcEEE--EEc
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI--AAL 247 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--~d~ 247 (424)
.|..+....++ ..++..+..|.++...+..- +-+..+...+.+..+.....+..++..+.+|.+.. ++.
T Consensus 167 ~vv~~~~~~~~--~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 167 ETSGLRIWNGE--PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CEEEEEEESSC--SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEEEEEeCCC--CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 56555554444 67888899999998876432 22222233344444433334456777788888877 877
Q ss_pred CCC
Q 014475 248 NAE 250 (424)
Q Consensus 248 ~~~ 250 (424)
..-
T Consensus 245 ~~i 247 (276)
T 3no0_A 245 KDI 247 (276)
T ss_dssp GGS
T ss_pred HHC
Confidence 653
No 373
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=75.23 E-value=44 Score=29.63 Aligned_cols=249 Identities=12% Similarity=0.045 Sum_probs=119.1
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-----------eeeecc-ccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-----------LKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVR 147 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~s~~~dg~i~ 147 (424)
...|..++...+. .++....++.|+.|-....-. ...+.. ....|..++.. ..+.+.-..+|.|+
T Consensus 67 ~~~i~~va~G~~h-t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 67 GHQIVSVTCGADH-TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp TSCEEEEEECSSE-EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCCEEEEEeCcce-EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 3467777665433 233333345899996532210 011111 22356666654 44566667899999
Q ss_pred EEeCCcccchhcccccccceEEeecC-CcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCce-----------eeee
Q 014475 148 IWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-----------LRNI 215 (424)
Q Consensus 148 iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-----------~~~~ 215 (424)
.|-.....+..............+.. ....|..++. .. .+.+....+|.|..|-....-. ...+
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~--G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v 219 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA--GA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 219 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEEC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec--CC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEe
Confidence 99765422111110011101111111 1224555544 22 4566667899999996432110 1111
Q ss_pred e--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc--Cceeeeeec-ccCcCeEEEEecCCCEEEEeCCCC
Q 014475 216 V--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLS-DHSKAVTCLAYSTGDLLISGSEDG 290 (424)
Q Consensus 216 ~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~-~~~~~i~~~~~~~~~~l~t~~~dg 290 (424)
. ....+..++. .....++-..+|.|+.|-........... .......+. .....|..++.. ..+.+.-..||
T Consensus 220 ~~~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-~~hs~alt~~G 296 (406)
T 4d9s_A 220 TSTGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-WRHTMALTSDG 296 (406)
T ss_dssp CCSTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTS
T ss_pred cccCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec-CCEEEEEcCCC
Confidence 1 1133444443 33445556788999999865543221100 000111111 122346666554 34444456789
Q ss_pred cEEEEeCCCC-c--------E--EEEEe-ccCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 291 MVRVWDPITH-N--------I--VRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 291 ~i~iwd~~~~-~--------~--~~~~~-~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
.|..|-.... + . ...+. .....|..++.-. ...++-..||.|..|-..
T Consensus 297 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 297 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp CEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred eEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 9999964431 1 0 11111 1223455555443 334444578999999764
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.04 E-value=6.7 Score=40.56 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.8
Q ss_pred eEEEEecC-CCEEEEeCCCCcEEEEeCCCCcEEEEEe
Q 014475 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (424)
Q Consensus 272 i~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~ 307 (424)
+.+++..+ ..++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34445555 7899999999999999999999998865
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.72 E-value=65 Score=31.06 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=39.3
Q ss_pred eEEEEEeCCCcEEEEecCCCceeeeeecCcce--eEEEECC---C-------CCEEEEEe--CCCcEEEEEcCCC
Q 014475 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDP---A-------EHVFYAGS--RDGSIYIAALNAE 250 (424)
Q Consensus 190 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~i--~~~~~~~---~-------~~~l~~~~--~dg~i~i~d~~~~ 250 (424)
.++++-+.|+++|+||+++++++......... ..-...| . +.++++-. .+|..++|.+...
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~~l~~~ 306 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVD 306 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC-
T ss_pred cEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEEEEEEc
Confidence 79999999999999999999988777642110 0001222 1 23444332 5678888988654
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=70.24 E-value=72 Score=29.87 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=41.9
Q ss_pred cCeEEEEecC-CCEEEEeCC------------CCcEEEEeCCCCcEEEEEecc-CCCeeEEEEEecCceeeec
Q 014475 270 KAVTCLAYST-GDLLISGSE------------DGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLG 328 (424)
Q Consensus 270 ~~i~~~~~~~-~~~l~t~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~ 328 (424)
.....|.|.+ |.+.++... ...|..++..+++....+... ..+++.++|+||++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3466799999 777774322 225777787788876666543 3578999999999988664
No 377
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=70.06 E-value=60 Score=28.90 Aligned_cols=246 Identities=13% Similarity=0.010 Sum_probs=120.7
Q ss_pred CCeeEEEECCCCCEEEEecCCCcEEEEEccCcce-------------eeeeccccCCeEEEEEccCCcEEEEeeCCCcEE
Q 014475 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVR 147 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~ 147 (424)
..|..++.. +.+.+.-..||.|+.|-....-. ...+. ....|..++.. ..+.+.-..||.|.
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEE
Confidence 356666554 44555556789999997643211 01111 12356666654 34556667899999
Q ss_pred EEeC--Ccccc-hhcccccccceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee------------
Q 014475 148 IWSL--LTVFE-ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL------------ 212 (424)
Q Consensus 148 iwd~--~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~------------ 212 (424)
.|-. ....+ ..........++. ......|..++.. . .+.+....+|.|..|-....-.+
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~--~~~~~~i~~va~G--~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 223 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPID--LMEGTVCCSIASG--A--DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEG 223 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEE--SSTTCCEEEEEEC--S--SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCS
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeE--ecCCCcEEEEecC--C--CeEEEEecCCeEEEeeCCcCCccCCCccccccccc
Confidence 9975 22111 0000111111121 1223355555543 2 45666778999999964321110
Q ss_pred ----------eeee--cCcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCC-C-cCceeeeeecccCcCeEEEEec
Q 014475 213 ----------RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-S-YGMHIIGSLSDHSKAVTCLAYS 278 (424)
Q Consensus 213 ----------~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-~~~~~~~~~~~~~~~i~~~~~~ 278 (424)
..+. ....|..++.. ....++.-..+|.++.|-......... . ...............|..++..
T Consensus 224 ~~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G 302 (423)
T 3mvd_K 224 RRGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG 302 (423)
T ss_dssp TTTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC
T ss_pred ccccccccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc
Confidence 0111 11233444332 122233335788999998765332211 0 0000011111113456666654
Q ss_pred CCCEEEEeCCCCcEEEEeCCCC------------cEEEEEeccCCCeeEEEEEecCceeeeccCCCceeeccCCC
Q 014475 279 TGDLLISGSEDGMVRVWDPITH------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (424)
Q Consensus 279 ~~~~l~t~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~~ 341 (424)
..+.+.-..||.|..|-.... .....+..-...|..++.-.. .-+.-..||.|+.|-...
T Consensus 303 -~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 303 -QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp -SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred -cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 344455567899999965321 111222222235666666544 333336899999997653
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.23 E-value=98 Score=32.00 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=30.0
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 216 (424)
.+.+++..++. .++++-+.|+++|+|++.+++++....
T Consensus 239 ~~vs~~~~~~~--~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTY--NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTT--TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCc--cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 33444554554 789999999999999999999888765
No 379
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.83 E-value=23 Score=33.36 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=41.9
Q ss_pred CeeEEEECCCCCEEEEecCC------------CcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEe
Q 014475 82 PIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISG 140 (424)
Q Consensus 82 ~v~~~~~s~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~ 140 (424)
..--|+|+|.|.+++.-..+ ..+.+.+..+++..+.+.++ ..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678899999977664322 24666677777766655543 4689999999999887765
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.89 E-value=40 Score=31.54 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=43.5
Q ss_pred CCeeEEEECCCCCEEEEecC------------CCcEEEEEccCcceeeeeccc-cCCeEEEEEccCCcEEEEee
Q 014475 81 EPIKPIAANSHGTYIAGGGQ------------SGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGS 141 (424)
Q Consensus 81 ~~v~~~~~s~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~s~~ 141 (424)
.....|.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35678999999987774321 125777777778766655433 35789999999999887764
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=59.53 E-value=1.4e+02 Score=29.37 Aligned_cols=149 Identities=12% Similarity=0.150 Sum_probs=72.1
Q ss_pred cCCeEEEEEccC-CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecC------CcCceeEEEEEEcCceeEEEE
Q 014475 122 YRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG------HTLRITDIVIGYGGVSATIVS 194 (424)
Q Consensus 122 ~~~i~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~~ 194 (424)
.+.|.+|.++|. ...+.++...+.|...+=.. ......... ....+.++++.|... +.++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG-----------~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~-~~i~~ 81 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT-----------SKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYL 81 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT-----------TEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC-----------CCeeECccCCCcccccCCceeEEEECCCCC-CEEEE
Confidence 468999999984 45666677666665443211 111111110 134688899887543 34444
Q ss_pred EeCCCc----EEEE-ecCCCceeeeeecC----------cceeEEEECCC-CCEEEEEeCCCcEEEEEcCCCCCCCCCcC
Q 014475 195 ASEDRT----CKVW-SLLKGRLLRNIVFP----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (424)
Q Consensus 195 ~~~d~~----v~iw-d~~~~~~~~~~~~~----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (424)
+..+.. -.|| ..+.++.-..+..+ ..+..++++|. ...++++...+.| |-...+...
T Consensus 82 ~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~T----- 154 (789)
T 1sqj_A 82 AQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKT----- 154 (789)
T ss_dssp EECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSS-----
T ss_pred EeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcc-----
Confidence 432211 2333 23334333332211 13456888874 4566666644433 333332211
Q ss_pred ceeeeeec---ccCcCeEEEEecC--CCEEEEeCCC
Q 014475 259 MHIIGSLS---DHSKAVTCLAYST--GDLLISGSED 289 (424)
Q Consensus 259 ~~~~~~~~---~~~~~i~~~~~~~--~~~l~t~~~d 289 (424)
++.+.... .....+..+.++| ...++.+..+
T Consensus 155 W~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 155 WTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 22222111 1124578888887 3455555443
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=55.97 E-value=1.5e+02 Score=28.67 Aligned_cols=37 Identities=14% Similarity=0.530 Sum_probs=30.4
Q ss_pred CeEEEEecCCCEEEEeCCCCcEEEEeCCCCcEEEEEec
Q 014475 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (424)
Q Consensus 271 ~i~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 308 (424)
.|.++.+ +..++++-+.|.++|+|++++++++.+...
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 378999999999999999999999988765
No 383
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=49.04 E-value=1.4e+02 Score=26.39 Aligned_cols=240 Identities=12% Similarity=-0.025 Sum_probs=116.3
Q ss_pred CCCccccCCCCceeEEEEECCCCc-------------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc--cC-c
Q 014475 49 SSQLREQPSASSGSILYWSWSKPQ-------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--AS-G 112 (424)
Q Consensus 49 ~~~~l~~~~~~~g~i~vwd~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~--~~-~ 112 (424)
.+...++...+ |.|..|-....- ..........|..++... .+.++-..||.|+.|-. .. +
T Consensus 83 G~~h~~~l~~~-G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~--~hs~al~~~G~v~~wG~~~n~~G 159 (423)
T 3mvd_K 83 GGMHNLVLTKS-GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD--SHSACLLEDGRVFAWGSFRDSHG 159 (423)
T ss_dssp CSSEEEEEETT-SCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS--SEEEEEETTSCEEEEECEECSSS
T ss_pred CCCeEEEEeCC-CeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc--CeEEEEeCCCeEEEEeCCCCCCC
Confidence 33344444444 899999764311 111111234566666543 34444467899999985 22 2
Q ss_pred cee--------eee-ccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhccc------------ccccceEEee
Q 014475 113 RLL--------KKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ------------RASHLYLHSF 171 (424)
Q Consensus 113 ~~~--------~~~-~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~~~ 171 (424)
++- ... ......|..++.. ..+.+.-..+|.|+.|-.....+..... .....+....
T Consensus 160 qlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~ 237 (423)
T 3mvd_K 160 NMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI 237 (423)
T ss_dssp EEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEEC
T ss_pred CcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEe
Confidence 110 000 1122356666654 3456666789999999754321111000 0001111111
Q ss_pred cCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCcee-----------eeee-cCcceeEEEECCCCCEEEEEeCC
Q 014475 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-----------RNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (424)
Q Consensus 172 ~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-----------~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (424)
......|..++.... ..++.-..++.|..|-......+ .... ....|..++. .....++-..+
T Consensus 238 ~~~~~~v~~i~~g~~---~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~alt~~ 312 (423)
T 3mvd_K 238 ITRAKPFEAIWATNY---CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTVILTTD 312 (423)
T ss_dssp CTTCCCEEEEEEETT---EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEEEEETT
T ss_pred ecCCccEEEEEECCc---EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEEEEeCC
Confidence 222345555554322 34444468899999975431110 0001 1234444443 34455556789
Q ss_pred CcEEEEEcCCCCCCCCCc---CceeeeeecccCcCeEEEEecCCCEEEEeCCCCcEEEEeCCC
Q 014475 240 GSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 240 g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~dg~i~iwd~~~ 299 (424)
|.|+.|-........... .......+..-...|..++... .+.+.-..||.|+.|=...
T Consensus 313 G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~-~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 313 LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE-VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET-TEEEEEETTSCEEEEECCT
T ss_pred CcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC-CeEEEEcCCCCEEEECCCC
Confidence 999999875432211100 0011112222223677776654 3334446799999997553
No 384
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=47.42 E-value=2e+02 Score=27.76 Aligned_cols=232 Identities=11% Similarity=0.034 Sum_probs=114.9
Q ss_pred eecCCCccccC----CCCceeEEEEECCCCceeeeecCC-C--------CeeEEEECCCCCEEEEe----------cCCC
Q 014475 46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPA-E--------PIKPIAANSHGTYIAGG----------GQSG 102 (424)
Q Consensus 46 ~~~~~~~l~~~----~~~~g~i~vwd~~~~~~~~~~~~~-~--------~v~~~~~s~~~~~l~~~----------~~dg 102 (424)
++|++++++.+ |+|...++++|+.+++........ . ....++|..+...+++. +...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 77888887754 556678999999988765322221 0 11334665344444431 1124
Q ss_pred cEEEEEccCcc--eeeeeccccCCe-EEEEEccCCc-----EEEEeeCC---CcEEEEeCCcccchhcccccccceEEee
Q 014475 103 DIYMWEVASGR--LLKKWHAHYRAV-TCLVFSEDGS-----FLISGSED---GCVRIWSLLTVFEECESQRASHLYLHSF 171 (424)
Q Consensus 103 ~v~iwd~~~~~--~~~~~~~~~~~i-~~~~~~~~~~-----~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 171 (424)
.|+.|.+-+.. -...+.+....+ .....+++++ .+++.+.+ ..+.+.+.... ... ...+
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~-~~~l 286 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK---------NLK-LQKI 286 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS---------SCE-EEEC
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC---------CCc-ceEe
Confidence 58888775542 222333333332 3344556655 24443322 34566665321 111 1111
Q ss_pred cCCcCceeEEEEEEcCceeEEEEE----------eCCCcEEEEecCCCc-------eeee-ee--cCcceeEEEECCCCC
Q 014475 172 TGHTLRITDIVIGYGGVSATIVSA----------SEDRTCKVWSLLKGR-------LLRN-IV--FPSVIDAIALDPAEH 231 (424)
Q Consensus 172 ~~~~~~i~~~~~~~~~~~~~l~~~----------~~d~~v~iwd~~~~~-------~~~~-~~--~~~~i~~~~~~~~~~ 231 (424)
..... ..+.....+ .+++.. ...+.|...|+.++. .... +. ....+..+.+..+ .
T Consensus 287 ~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 287 NMPSD--ATLQGSFKE--YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp CSCTT--CEEEEEETT--EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred ecCCc--ceEeeeECC--EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 11111 112233443 444422 246779999987642 1222 32 3456778888865 5
Q ss_pred EEEEEeCCCc--EEEEEcCCCCCCCCCcCceeeeeecccCcCeEEEEecC--CCEEEEeC---CCCcEEEEeCC
Q 014475 232 VFYAGSRDGS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGS---EDGMVRVWDPI 298 (424)
Q Consensus 232 ~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~l~t~~---~dg~i~iwd~~ 298 (424)
++++...++. ++++++.++... ...+..+.. .+.+......+ +.++++.+ .-+.+..+|+.
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~-----~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWT-----KPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEEC-----CCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCEEEEEEEECCCCceE-----EEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666677764 566666543100 011011111 23455555555 44555443 34668888876
No 385
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=44.10 E-value=1.7e+02 Score=25.75 Aligned_cols=170 Identities=8% Similarity=0.113 Sum_probs=88.6
Q ss_pred eeEEEEECCCC--ceeeeec-------CCCCeeEEEEC---CC----CCEEEEe-cCCCcEEEEEccCcceeeeecc---
Q 014475 61 GSILYWSWSKP--QVEVKSL-------PAEPIKPIAAN---SH----GTYIAGG-GQSGDIYMWEVASGRLLKKWHA--- 120 (424)
Q Consensus 61 g~i~vwd~~~~--~~~~~~~-------~~~~v~~~~~s---~~----~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~--- 120 (424)
-.|.+||+.+. +...... ....+..+++. |+ +.++..+ ...+.|.|+|+.+++.-+.+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 47999999988 6553332 23457777777 22 3344333 3456799999998865544311
Q ss_pred -----------c----cCCeEEEEEccC----CcEEEEeeCCCcEEEEeCCcccchhcccccccceEEeecCC--cCcee
Q 014475 121 -----------H----YRAVTCLVFSED----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRIT 179 (424)
Q Consensus 121 -----------~----~~~i~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 179 (424)
. ...+..|+++|+ ++.|.-....+ -++|.+.+........ ...++.+... ...-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~---~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGG---KLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTC---CCCCEEEEECCTTCCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcch---hhceEEeeecCCCCCcc
Confidence 0 236778888886 55555544433 2445443311100000 1111111111 12222
Q ss_pred EEEEE-EcCceeEEEEEeCCCcEEEEecCC-C---ceeeeeecC---cceeEEEECCCCCEEEEE
Q 014475 180 DIVIG-YGGVSATIVSASEDRTCKVWSLLK-G---RLLRNIVFP---SVIDAIALDPAEHVFYAG 236 (424)
Q Consensus 180 ~~~~~-~~~~~~~l~~~~~d~~v~iwd~~~-~---~~~~~~~~~---~~i~~~~~~~~~~~l~~~ 236 (424)
.+++. ..| .++++--..+.|..|+..+ . +....+.+. .-+..+.+.+++.+.+..
T Consensus 279 ~~~~D~~~G--~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTK--VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTC--EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCC--eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 33443 333 7777777888999999875 1 122333222 124566666555544443
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=43.49 E-value=1.5e+02 Score=27.18 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=45.3
Q ss_pred ceeEEEEEEc----CceeEEEEEeCCCcEEEEecC-CCc-------eeeeee---cCcceeEEEECCCCCEEEEEeCCCc
Q 014475 177 RITDIVIGYG----GVSATIVSASEDRTCKVWSLL-KGR-------LLRNIV---FPSVIDAIALDPAEHVFYAGSRDGS 241 (424)
Q Consensus 177 ~i~~~~~~~~----~~~~~l~~~~~d~~v~iwd~~-~~~-------~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (424)
..++|+...- +.-..++.|+.+|.|.-.-+. .+. .+..+. .+.+|..+.++++...|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4677777654 544678889999987544332 211 222333 3578999999999999999998775
Q ss_pred EEE
Q 014475 242 IYI 244 (424)
Q Consensus 242 i~i 244 (424)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 387
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=42.31 E-value=2.4e+02 Score=27.12 Aligned_cols=186 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred eEEEeecCCCCCce----------EEEeCCCCceEEEeeCCCCCCCceEEecceeecCCCccccCCCCceeEEEEECCCC
Q 014475 2 ELLIASSSVADTGI----------GCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (424)
Q Consensus 2 e~~lat~~~~dg~i----------~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~i~vwd~~~~ 71 (424)
|...++-+ .+|.| .-.....+..+..+-....|..-+. |...|+. -.+.+|++...
T Consensus 472 e~v~v~ls-~~GyiKr~~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~-----ft~~Gr~--------y~~~~~~lP~~ 537 (716)
T 1zvu_A 472 EPVTIVLS-QMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF-----VDSTGRS--------YAIDPITLPSA 537 (716)
T ss_dssp CCCCEEEE-TTTEEEECCC---------------CCEEECCCSSSCEEE-----EETTSEE--------EEECTTTSCCC
T ss_pred ceEEEEEe-cCCeEeccCCCCcCccccccCCCCeEEEEEEecCCCEEEE-----EecCCcE--------EEEEeeecccc
Q ss_pred c-------eeeeecCCCCeeEEEECCCCCEEEEecCCCcEEEEEc-------cCcceeeeeccccCCeEEEEEccCCcEE
Q 014475 72 Q-------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-------ASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (424)
Q Consensus 72 ~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l 137 (424)
. ........+.|.++-..++..+++.++..|.++.-.+ ..|.....+.....-+........+..+
T Consensus 538 ~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v 617 (716)
T 1zvu_A 538 RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 617 (716)
T ss_dssp C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEE
T ss_pred cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEE
Q ss_pred EEeeCCCcEEEEeCCcccchhcccccccceEE--eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEE
Q 014475 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLH--SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (424)
Q Consensus 138 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~i 203 (424)
+..+.+|.+..|+.................+. ........+.++.....+ ..+++.+..++.++
T Consensus 618 ~l~t~~g~~lrf~~~~v~~~gr~~GV~~i~l~~~~~k~~~d~v~~~~~~~~~--~~l~~~~gk~~~~~ 683 (716)
T 1zvu_A 618 LAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ--STLTIHVGKRKIKL 683 (716)
T ss_dssp EEEETTSEEEEEESTTSCBCSSBSCEESSCCCHHHHHTTSSCEEEEEEECSS--CCEEEEETTEEEEE
T ss_pred EEEeCCCeEEEEEHHHCCccCcccCeEEEEecccccCCCCCEEEEEEEecCC--CeEEEEECCccccc
No 388
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=42.09 E-value=99 Score=28.72 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=46.1
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC----ceeeeee---cCccee-EEEECCCCCEEEEEeCCCcEEE
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNIV---FPSVID-AIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~---~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 244 (424)
..++++....+....++.|+.+|.|.-..+... .....+. .+.+|. .+.+++++..|++++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 466777776666678889999998776555422 1233333 246774 8999999999999887654443
No 389
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=40.53 E-value=1.9e+02 Score=25.39 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=68.4
Q ss_pred cCceeEEEEEE-c----CceeEEEEE-eCCCcEEEEecCCCceeeeee-------------------cCcceeEEEECCC
Q 014475 175 TLRITDIVIGY-G----GVSATIVSA-SEDRTCKVWSLLKGRLLRNIV-------------------FPSVIDAIALDPA 229 (424)
Q Consensus 175 ~~~i~~~~~~~-~----~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~-------------------~~~~i~~~~~~~~ 229 (424)
.+.+..+.+.. . +...++..+ +..+.|.++|+.+++.-+... ....+..++++|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 35677888872 1 111343333 346789999999877655442 1236788899997
Q ss_pred ----CCEEEEEeCCC-cEEEEEc---CCCCCCCCCcCceeeeeecccCcCeEEEEec-C-CCEEEEeCCCCcEEEEeCCC
Q 014475 230 ----EHVFYAGSRDG-SIYIAAL---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPIT 299 (424)
Q Consensus 230 ----~~~l~~~~~dg-~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~t~~~dg~i~iwd~~~ 299 (424)
++.|+-....+ .++-... +.... ....+.+.. ++....-..+++. . |.++++--....|..|+..+
T Consensus 231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~---~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGG---KLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTSCCEEEEEESSCSEEEEEEHHHHSSTTC---CCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred cCCCCeEEEEEECCCCcEEEEEHHHhhCcch---hhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 67777665554 3433332 22211 111111111 1111233456675 4 77777777889999999875
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=36.98 E-value=1.7e+02 Score=23.87 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=80.8
Q ss_pred EEEEecCCCcEEEEEccCcce-eeeeccccCCeEEEEEccCCcEEEEeeCCCcEEEEeCCcccchhcccccccceE---E
Q 014475 94 YIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---H 169 (424)
Q Consensus 94 ~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~ 169 (424)
..++.+.+|.|+--....... ...++.. +.+..+........++..+..|.++-+........ . ....++ .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r---~~G~~i~~~i 78 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R---GQGEPLTGKL 78 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S---SCCEEGGGTC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C---CCCeEeeeee
Confidence 445556777776554432111 1123333 34444444444455677778898877766442111 0 111111 1
Q ss_pred eecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCC-------CceeeeeecCcceeEEEEC-CCCCEEEEEeCCCc
Q 014475 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGS 241 (424)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~ 241 (424)
.+. ....|.++....+. ..++.++..|.++...+.. +.....+...+.+-.+... ..+..++..+.+|.
T Consensus 79 ~L~-~~e~Iv~~~~~~~~--~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 79 TLP-PGATVDHMLMESDD--QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp CCC-TTCCEEEEECCCTT--CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSE
T ss_pred cCC-CCCEEEEEEEeCCC--CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCe
Confidence 122 23456555332233 6688889999999988743 2223333334455555554 34567888999999
Q ss_pred EEEEEcCCC
Q 014475 242 IYIAALNAE 250 (424)
Q Consensus 242 i~i~d~~~~ 250 (424)
+..+....-
T Consensus 156 ~lrf~~~ei 164 (256)
T 1zvt_A 156 MLMFPVSDL 164 (256)
T ss_dssp EEEEEGGGS
T ss_pred EEEEEHHHC
Confidence 999988764
No 391
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=28.69 E-value=2.9e+02 Score=25.55 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=44.7
Q ss_pred ceeEEEEEEcCceeEEEEEeCCCcEEEEecC-CC--ceeeeee--cCcce-eEEEECCCCCEEEEEeCCCcEEE
Q 014475 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLL-KG--RLLRNIV--FPSVI-DAIALDPAEHVFYAGSRDGSIYI 244 (424)
Q Consensus 177 ~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~--~~~~~~~--~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 244 (424)
..+.|+.........++.|+.+|.|.-.-+. .+ ..+..+. ...+| ..+.++++...|++++..+.+++
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 4667776655444677889999988754443 21 1223332 34567 48999999999999988775554
No 392
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=24.61 E-value=69 Score=21.47 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=22.9
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEec
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVG 43 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 43 (424)
-.|.|||+.+|..+.++--......++.|+.
T Consensus 18 E~V~IvNvnNG~Rf~TYvI~GerGSG~I~lN 48 (96)
T 1vc3_B 18 EQVDIYDITNGARLTTYALPGERGSGVIGIN 48 (96)
T ss_dssp CEEEEEETTTCCEEEEECEEECTTTTCEEEE
T ss_pred CEEEEEECCCCceEEEEEEEccCCCCeEEEc
Confidence 4699999999999998854444445666654
No 393
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=23.85 E-value=68 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.6
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEec
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVG 43 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 43 (424)
-.|.|||+.+|..+.++--.... .++.|+.
T Consensus 17 E~V~IvNvnNG~RfeTYvI~Ger-SG~I~lN 46 (97)
T 1uhe_A 17 MKVEIVDVNNGERFSTYVILGKK-RGEICVN 46 (97)
T ss_dssp CEEEEEETTTCCEEEEECEEECS-TTCEEEE
T ss_pred CEEEEEECCCCceEEEEEEeecc-CCeEEEc
Confidence 46999999999999998544444 6666654
No 394
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=22.23 E-value=84 Score=21.76 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=22.7
Q ss_pred CceEEEeCCCCceEEEeeCCCCCCCceEEec
Q 014475 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVG 43 (424)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 43 (424)
-.|.|||+.+|..+.++--......++.|+.
T Consensus 45 E~V~I~NvnNG~Rf~TYvI~GerGSg~I~lN 75 (114)
T 3oug_A 45 EKVQVVNLNNGERLETYVIKGEPNSKTIALN 75 (114)
T ss_dssp BEEEEEETTTCCEEEEEEEEECTTSCCEEEE
T ss_pred CEEEEEECCCCceEEEEEEEccCCCCEEEeC
Confidence 4689999999999998765444445666654
No 395
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=21.81 E-value=4e+02 Score=23.27 Aligned_cols=248 Identities=12% Similarity=0.032 Sum_probs=118.4
Q ss_pred CCCeeEEEECCCCCEEEEecCCCcEEEEEccCc-c----------eeeeecc-ccCCeEEEEEccCCcEEEEeeCC-CcE
Q 014475 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-R----------LLKKWHA-HYRAVTCLVFSEDGSFLISGSED-GCV 146 (424)
Q Consensus 80 ~~~v~~~~~s~~~~~l~~~~~dg~v~iwd~~~~-~----------~~~~~~~-~~~~i~~~~~~~~~~~l~s~~~d-g~i 146 (424)
...|..++.-. .+.++-..+|.|+.|-.... + ....+.. ....|..++.. ..+.+.-..+ +.|
T Consensus 15 ~~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEE
T ss_pred ccceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEE
Confidence 45666666543 34444456888888865431 1 0111111 12356666664 3344434445 489
Q ss_pred EEEeCCcccchhcccccc-cceEEeecCCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCC-ce----------eee
Q 014475 147 RIWSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RL----------LRN 214 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~----------~~~ 214 (424)
+.|-.....+........ ..+..........|..++.. . .+.+....+|.|..|-.... ++ ...
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~--~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--D--SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--S--SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--h--hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 999754422111100000 01111111122355555542 3 45666778999999975431 11 111
Q ss_pred eec--CcceeEEEECCCCCEEEEEeCCCcEEEEEcCCCCCCCCCc---CceeeeeecccCcCeEEEEecCCCEEEEeCCC
Q 014475 215 IVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (424)
Q Consensus 215 ~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~t~~~d 289 (424)
+.. ...|..++. .....++-..+|.++.|-........... ...+..........|..++.. ..+.+.-..+
T Consensus 167 v~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~ht~~l~~~ 243 (406)
T 4d9s_A 167 IQAFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG-WRHTISVSYS 243 (406)
T ss_dssp CGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-SSEEEEEETT
T ss_pred ecccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-CCcEEEEcCC
Confidence 111 124555544 34455666789999999865432211100 001111111122456666554 3444555678
Q ss_pred CcEEEEeCCCCc-----------EEEEEec-cCCCeeEEEEEecCceeeeccCCCceeeccCC
Q 014475 290 GMVRVWDPITHN-----------IVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (424)
Q Consensus 290 g~i~iwd~~~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d~~i~iw~~~ 340 (424)
|.|..|-....- ....+.. ....|..++.-. ...+.-..||.+..|-..
T Consensus 244 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 244 GALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW--RHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp CCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred CCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecC--CEEEEEcCCCeEEEeeCC
Confidence 999999644211 1111111 122455554433 333444578889988654
No 396
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=21.78 E-value=5.3e+02 Score=24.69 Aligned_cols=67 Identities=27% Similarity=0.380 Sum_probs=41.9
Q ss_pred eeEEEEEE----cCceeEEEEEeCCCcEE-EEecCCCc-------eeeee---ecCcceeEEEECCCCCEEEEEeCCCcE
Q 014475 178 ITDIVIGY----GGVSATIVSASEDRTCK-VWSLLKGR-------LLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSI 242 (424)
Q Consensus 178 i~~~~~~~----~~~~~~l~~~~~d~~v~-iwd~~~~~-------~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (424)
.+.|+... ++....++.|+.+|.|. +.-...+. .+..+ ..+.+|..+.++++...|++++.++.+
T Consensus 414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~ 493 (667)
T 4gz8_A 414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 493 (667)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence 45555532 23335788899999875 33222111 12222 256789999999999999999988755
Q ss_pred EE
Q 014475 243 YI 244 (424)
Q Consensus 243 ~i 244 (424)
++
T Consensus 494 kV 495 (667)
T 4gz8_A 494 QL 495 (667)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 397
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.07 E-value=1.8e+02 Score=26.60 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=42.4
Q ss_pred CeEEEEecC-------CCEEEEeCCCCcEEEEeC-CCC-------cEEEEEec--cCCCeeEEEEEecCceeeeccCCCc
Q 014475 271 AVTCLAYST-------GDLLISGSEDGMVRVWDP-ITH-------NIVRMFRL--AKGPVNNILVVRRPLYLNLGSFSNP 333 (424)
Q Consensus 271 ~i~~~~~~~-------~~~l~t~~~dg~i~iwd~-~~~-------~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~d~~ 333 (424)
..++|+... -..+..|..+|.|.=.-+ ..+ ..+..+.. ...+|..+.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666543 236777888887643332 222 12334443 3579999999999999999998887
Q ss_pred eee
Q 014475 334 HTS 336 (424)
Q Consensus 334 i~i 336 (424)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 398
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=20.14 E-value=6.1e+02 Score=24.74 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=72.8
Q ss_pred CCCeeEEEECCC-CCEEEEecCCCcEEEEEccCcceeeeecc-------ccCCeEEEEEccC-CcEEEEeeCCCc----E
Q 014475 80 AEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHA-------HYRAVTCLVFSED-GSFLISGSEDGC----V 146 (424)
Q Consensus 80 ~~~v~~~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~~l~s~~~dg~----i 146 (424)
...|.+|+++|. ...+.+++..+.|...+ ..|+.-..+.. ....+.++++.|. .+.+..+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999995 45566666666665554 33332222221 2346999999984 344444432211 2
Q ss_pred EEEeCCcccchhcccccccceEEe-ec-----CCcCceeEEEEEEcCceeEEEEEeCCCcEEEEecCCCceeeeee----
Q 014475 147 RIWSLLTVFEECESQRASHLYLHS-FT-----GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---- 216 (424)
Q Consensus 147 ~iwd~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~i~~~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---- 216 (424)
.||...++... ...+.. +. .....+..+++.|... +.++.+...+.|. ...+.++.-..+.
T Consensus 93 ~v~~S~DgG~T-------W~~~~~~~~~~~~~~~~~~~~~iav~p~~~-~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~ 163 (789)
T 1sqj_A 93 AFYVSEDRGQS-------FTIYESPFPMGANDMGRNNGERLAVNPFNS-NEVWMGTRTEGIW-KSSDRAKTWTNVTSIPD 163 (789)
T ss_dssp EEEEESSTTSE-------EEEEECSSCCCTTSTTTTSCCCEEEETTEE-EEEEEECSSSCEE-EESSTTSSCEEETTSCC
T ss_pred EEEEECCCCCc-------ceeccCCcccCccCCCccceeEEEEcCCCC-CEEEEEeccCCEE-EECCCCcccCCCccCcc
Confidence 34433221111 111100 00 0011345677776543 4555665444332 1222233222221
Q ss_pred ---cCcceeEEEECCC-CCEEEEEeCC
Q 014475 217 ---FPSVIDAIALDPA-EHVFYAGSRD 239 (424)
Q Consensus 217 ---~~~~i~~~~~~~~-~~~l~~~~~d 239 (424)
....+..+.++|. +..++++..+
T Consensus 164 ~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 164 AFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1245788899884 4566666654
Done!