Query 014480
Match_columns 423
No_of_seqs 217 out of 1647
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2788 Glycosyltransferase [C 100.0 3.6E-59 7.8E-64 451.3 13.2 348 72-423 5-414 (418)
2 TIGR02380 ECA_wecA undecapreny 100.0 7.8E-55 1.7E-59 438.7 30.9 298 80-415 4-309 (346)
3 PRK15119 undecaprenyl-phosphat 100.0 4E-54 8.6E-59 436.1 32.2 297 81-415 11-313 (365)
4 cd06856 GT_GPT_archaea UDP-Glc 100.0 1E-53 2.3E-58 419.5 29.9 277 105-411 2-280 (280)
5 PRK00108 mraY phospho-N-acetyl 100.0 1.9E-52 4.1E-57 421.5 35.1 315 73-416 8-342 (344)
6 COG0472 Rfe UDP-N-acetylmuramy 100.0 2.7E-53 5.9E-58 423.2 25.9 304 79-417 8-315 (319)
7 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 8.6E-53 1.9E-57 413.3 28.4 276 92-374 2-282 (283)
8 cd06854 GT_WbpL_WbcO_like The 100.0 5.2E-52 1.1E-56 402.6 21.1 250 109-396 3-253 (253)
9 PRK14655 mraY phospho-N-acetyl 100.0 1.1E-50 2.3E-55 400.9 29.5 284 81-414 2-299 (304)
10 PRK14654 mraY phospho-N-acetyl 100.0 2E-50 4.2E-55 399.5 28.2 288 82-418 4-301 (302)
11 TIGR00445 mraY phospho-N-acety 100.0 4.6E-50 1E-54 400.7 28.2 300 88-416 2-319 (321)
12 cd06852 GT_MraY Phospho-N-acet 100.0 8.5E-47 1.8E-51 371.0 25.5 266 114-413 5-279 (280)
13 cd06853 GT_WecA_like This subf 100.0 3.3E-47 7.1E-52 368.3 21.6 241 114-375 2-243 (249)
14 cd06851 GT_GPT_like This famil 100.0 6.2E-45 1.3E-49 346.7 24.4 220 105-345 2-222 (223)
15 cd06912 GT_MraY_like This subf 100.0 3.9E-40 8.5E-45 307.4 19.8 190 111-323 1-192 (193)
16 cd06499 GT_MraY-like Glycosylt 100.0 2.3E-38 4.9E-43 293.6 18.8 181 119-324 1-185 (185)
17 PF00953 Glycos_transf_4: Glyc 100.0 1.9E-33 4E-38 254.9 16.1 155 157-328 4-159 (159)
18 PF10555 MraY_sig1: Phospho-N- 82.6 0.24 5.3E-06 26.2 -0.8 11 118-128 2-12 (13)
19 PRK12876 ubiA prenyltransferas 39.7 65 0.0014 32.4 5.9 21 102-122 68-88 (300)
20 PF11391 DUF2798: Protein of u 38.9 1.6E+02 0.0036 22.0 6.7 44 57-100 14-58 (60)
21 COG5373 Predicted membrane pro 36.3 6.1E+02 0.013 29.3 12.9 39 60-103 150-188 (931)
22 PF06781 UPF0233: Uncharacteri 27.9 3.4E+02 0.0074 22.3 7.7 51 37-87 28-83 (87)
23 PF02673 BacA: Bacitracin resi 23.9 3.3E+02 0.0072 26.7 7.7 64 40-103 178-245 (259)
24 PRK12888 ubiA prenyltransferas 21.3 1.9E+02 0.004 28.7 5.5 20 103-122 61-80 (284)
25 COG0382 UbiA 4-hydroxybenzoate 21.2 3.8E+02 0.0082 26.3 7.7 20 103-122 69-88 (289)
26 PF05552 TM_helix: Conserved T 21.0 2.9E+02 0.0062 20.0 5.1 32 72-103 17-48 (53)
27 COG5000 NtrY Signal transducti 20.2 2.7E+02 0.0058 31.0 6.6 73 42-119 8-81 (712)
No 1
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-59 Score=451.28 Aligned_cols=348 Identities=55% Similarity=0.972 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHhhcc-------
Q 014480 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF------- 144 (423)
Q Consensus 72 ~~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~H~~~~P~~GGiai~~~~li~~~l~~~~~~------- 144 (423)
+..+....+..++..+..+.|.+.....|.|+.|+|.+|++++ .+|+.-|.....++++..+.+..+.+
T Consensus 5 ~l~~n~~~s~~~y~at~~~iPr~g~~Fi~~~l~g~dl~k~~~~----~~pe~~gai~a~V~l~v~~~fIP~pfm~~~~~~ 80 (418)
T KOG2788|consen 5 ALLINVGFSSAGYEATVMLIPRVGVSFIKAGLFGKDLNKDNRP----VIPETIGAISAAVYLIVMFIFIPFPFMFRGTPQ 80 (418)
T ss_pred hhhhhhhhhhhhhhhhhhccccccceeeeecccccccCcCCcc----cCchhhhhHHHHHHHHHHHhhcccccccCCCCc
Confidence 4566778888899999999999999999999999999999864 79999999988888887766543322
Q ss_pred ------c-----cchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHH---hCceEEEecCCccc
Q 014480 145 ------T-----ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAY---AGHTSIIIPKPLVP 210 (423)
Q Consensus 145 ------~-----~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~~~~---~g~~~i~ip~~~~p 210 (423)
+ -++.-+.++++.+++++.+.++|+.||+.|++||.|+.++.+++++++++| .|.|.+.+|+++.+
T Consensus 81 ~d~~v~e~~~~~Fphd~l~~l~sallsi~~~ilLGfaDD~ldlrWRhKl~lPt~AtlPLLmVYyv~~g~TtV~iP~~~r~ 160 (418)
T KOG2788|consen 81 GDVSVVESFQFNFPHDKLVELLSALLSICSMILLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVSFGVTTVVIPKPLRN 160 (418)
T ss_pred ccccccccccccCChHHHHHHHHHHHHHhHHHHhcccchhccchhhhheeccchhhCceEEEEEEcCCceEEEecHHHHh
Confidence 0 122335688888999999999999999999999999999999999997766 68899999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchh-hhhhHHHHHHHHHH
Q 014480 211 YVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEY-KQAHAFSIYLVQPL 289 (423)
Q Consensus 211 ~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~-~~~~~~~~~l~l~l 289 (423)
+.|...+++|.+|++++....++|+|++|+.+|+||++.||+++++....+.+..+..+..+++. .+.|.+|.++.+++
T Consensus 161 ~l~~~~~nlg~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~~~~~~~~~~~~h~fSlyl~~p~ 240 (418)
T KOG2788|consen 161 ILGLTSLNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLWRSVDPEATRFAHAFSLYLTIPL 240 (418)
T ss_pred hhccceecccchHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHHHhcccCccccchhhhHHHHHHhHH
Confidence 99977889999999999999999999999999999999999999999998888877765555543 34788999999999
Q ss_pred HHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCC
Q 014480 290 LATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQT 369 (423)
Q Consensus 290 ~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~ 369 (423)
.+..+|.+.|||||+|+|+|||.+|+.|+++|+++|+||+++++++++.||++||++++||++.+++|+|||.|++++.+
T Consensus 241 ~~~sl~ll~~n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKTllLFFiPQI~NFlyS~PQLfhlVpCPRHRLPKyd~kT 320 (418)
T KOG2788|consen 241 LATSLALLKYNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQILNFLYSLPQLFHLVPCPRHRLPKYDPKT 320 (418)
T ss_pred HHHHHHHHHhccCCceEEeccceeeeccchhhhhHHhhhhHHHHHHHHHHHHHHHHHhhHHHcCcccCccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC----------------------------------------CchhHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 014480 370 GLLTGTN----------------------------------------DGTLVNFFLRLFGKMSEGSLCAALLVFQAIACC 409 (423)
Q Consensus 370 ~hLh~~~----------------------------------------~~~l~~l~L~~~G~~se~~v~~~l~~i~~~~~~ 409 (423)
+.++.+. |.|++|+.|+.+||++|+.++..++.+|+++++
T Consensus 321 gll~~S~~efk~~dl~~~g~l~i~v~~~l~li~v~~~e~~g~~l~~nN~TlINlvL~~~GP~hEk~L~~~lm~lQil~~~ 400 (418)
T KOG2788|consen 321 GLLSMSYAEFKLTDLKRPGALFITVCKSLGLIHVKEVEKDGIYLQINNLTLINLVLKFFGPLHEKTLCIVLMSLQILCSL 400 (418)
T ss_pred CceeeehhhhcccccccccchhhHHHhhccceeEEeecCCceEEEecCeeEEEeehhhhCccchhHHHHHHHHHHHHHHH
Confidence 9888754 789999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC
Q 014480 410 LCFVLRYFLTGWYK 423 (423)
Q Consensus 410 ~~l~~~~~~~~~~~ 423 (423)
+++.+||++++||+
T Consensus 401 laf~iR~~la~lfy 414 (418)
T KOG2788|consen 401 LAFFIRHYLASLFY 414 (418)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999974
No 2
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=100.00 E-value=7.8e-55 Score=438.68 Aligned_cols=298 Identities=17% Similarity=0.203 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCCC-CcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014480 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (423)
Q Consensus 80 ~~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~-H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~l 158 (423)
.++++++|+.++|.++++++|.|++ |+||.|| |+++|||+||++++.+++++...+. . ..+. ....+
T Consensus 4 ~~~~~~~s~~~~~~~~~~a~r~~lv----D~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~--~-~~~~-----~~~~l 71 (346)
T TIGR02380 4 LIVIFLSSFAFLFLMRKVAKIVGLV----DKPNARKRHQGFIPLVGGISIFLTLCIYLFLHP--A-LIPH-----YSLYL 71 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC----cCCCCCCCCCCCcCCcCcHHHHHHHHHHHHHHh--c-chhH-----HHHHH
Confidence 3467888999999999999999987 5788887 9999999999999988876654421 1 1111 11234
Q ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhc
Q 014480 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSI 238 (423)
Q Consensus 159 l~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~Nav 238 (423)
.+...++++|++||+++++++.|+..|++++.+++. .|+.. +.. +.+.++...+++++++++++++++++.+||+
T Consensus 72 ~~~~li~~iG~~DD~~~Ls~~~rl~~q~~aa~~~~~--~~~~~--i~~-~~~~~~~~~l~l~~~~~~~t~~~iv~~~Na~ 146 (346)
T TIGR02380 72 FCATILVVIGIIDDRFDISVKIRLAIQAAVSIVMIQ--FGNIY--LHS-LGNIFGPKELTLGLFGYIITIFAVIGAINAF 146 (346)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH--Hcccc--hhh-cccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999987642 23211 111 1112332246778999999999999999999
Q ss_pred hhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhcccc-----CCeeccCccch
Q 014480 239 NIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWY-----PSSVFVGDTYT 313 (423)
Q Consensus 239 Nl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~-----PAkIFmGDtGS 313 (423)
|++||+|||++|++++++.++++..+.. ++.....++++++|+++|||+|||| |||+||||+||
T Consensus 147 N~iDGiDGLa~g~~~i~~~~l~~~~~~~-----------~~~~~~~~~~~l~ga~lgFL~~N~~~~~~~pAkIFMGD~GS 215 (346)
T TIGR02380 147 NMIDGIDGLLGGLSCVSFAALGYLFWLD-----------GQVELAYWCFALIVAILPYLMLNLGIPLGRKFKVFMGDAGS 215 (346)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEeccchhh
Confidence 9999999999999999999888766532 1122235677899999999999997 89999999999
Q ss_pred HHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCC
Q 014480 314 YFAGMTMAVVGILGHFSE--TLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKM 391 (423)
Q Consensus 314 ~~lG~~la~iaI~~~~~~--~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~ 391 (423)
+++|+.+|+.++...++. .......|..+-.....+++.+++||.++||++|+|||+|+||. +++.| +
T Consensus 216 ~~LGf~la~~~i~~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~i~rR~~~g~~~f~adr~Hlhh~---------L~~~G-~ 285 (346)
T TIGR02380 216 TFIGFTVIWLLLLATQGESSPSMRPVTALWLIALPLMDMAAIMLRRIRKGDSPFKPDRQHLHHI---------LQRLG-L 285 (346)
T ss_pred HHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCccHHHH---------HHHcC-C
Confidence 999999999998875432 11112233333223344578899999999999999999999994 66789 9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 014480 392 SEGSLCAALLVFQAIACCLCFVLR 415 (423)
Q Consensus 392 se~~v~~~l~~i~~~~~~~~l~~~ 415 (423)
||+|++..++.++++++++++...
T Consensus 286 s~~~~~~~~~~~~~~~~~~~~~~~ 309 (346)
T TIGR02380 286 TSRQSLFVICGFAALFAAIGIWSE 309 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
No 3
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=100.00 E-value=4e-54 Score=436.09 Aligned_cols=297 Identities=15% Similarity=0.160 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCCCCCC-CcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Q 014480 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (423)
Q Consensus 81 ~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~-H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll 159 (423)
++++++|+.++|.++++++|.|++ |+|++|| |+++||++||++++.+++++..++.. . .+. ....+.
T Consensus 11 ~~~~~~s~~l~~~~~~~a~r~gl~----D~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~--~-~~~-----~~~~l~ 78 (365)
T PRK15119 11 ISIFLFSTLFLFFARKVAKKIGLV----DKPNYRKRHQGLIPLVGGISVYAGICFTFGITDY--Y-IPH-----ASLYLA 78 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCcCCCCCCCCcCcHHHHHHHHHHHHHHHh--c-chh-----HHHHHH
Confidence 456788889999999999999987 4677766 99999999999999988776654321 1 111 112344
Q ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhch
Q 014480 160 SICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSIN 239 (423)
Q Consensus 160 ~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavN 239 (423)
+...+.++|++||+++++++.|++.|+++|..++. +.|. .++. +.+.++...+++++++++++++++++++||+|
T Consensus 79 ~~~ll~~iG~~DD~~~l~~~~RL~~Q~~aa~~l~~-~~g~---~i~~-~~~~~~~~~i~~~~~~~~~tv~~iv~~iNA~N 153 (365)
T PRK15119 79 CAGVLVFVGALDDRFDISVKIRATIQAAVGIVMMV-FAGL---YLSS-LGYIFGPWEMVLGPFGYFLTLFAVWAAINAFN 153 (365)
T ss_pred HHHHHHHHHhHhcccCCCHHHHHHHHHHHHHHHHH-HhCc---chhc-cccccccccccchHHHHHHHHHHHHHHHhHHH
Confidence 55567789999999999999999999999876542 3331 1211 11112322355678899999999999999999
Q ss_pred hccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccc----cCCeeccCccchHH
Q 014480 240 IHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNW----YPSSVFVGDTYTYF 315 (423)
Q Consensus 240 l~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~----~PAkIFmGDtGS~~ 315 (423)
++||+|||++|++++++.++++.++... +.....++++++|+++|||+||| ||||+||||+||++
T Consensus 154 ~iDGiDGLa~g~~~i~~~~l~~~~~~~~-----------~~~~~~~~~~l~ga~lgFL~fN~~~~~~pAkIFMGD~GS~~ 222 (365)
T PRK15119 154 MVDGIDGLLGGLSCVSFAAMGIILWFDG-----------QTSLALWCFAMIAAILPYILLNLGILGRRYKVFMGDAGSTL 222 (365)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEeccchhHHH
Confidence 9999999999999999999887765421 12234567888999999999999 57999999999999
Q ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChH
Q 014480 316 AGMTMAVVGILGHFSE-TLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEG 394 (423)
Q Consensus 316 lG~~la~iaI~~~~~~-~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~se~ 394 (423)
+|+.+|+.++...++. .......|..+-.....+++.+++||.++|||+|+|||+|+||. +.+.| +||+
T Consensus 223 LGf~la~~~i~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~~~rR~~~g~~~f~adr~Hlhh~---------L~~~G-~s~~ 292 (365)
T PRK15119 223 IGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHL---------IMRAG-FTSR 292 (365)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHH---------HHHcC-CCHH
Confidence 9999999998774422 21122233333333344578899999999999999999999994 66679 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014480 395 SLCAALLVFQAIACCLCFVLR 415 (423)
Q Consensus 395 ~v~~~l~~i~~~~~~~~l~~~ 415 (423)
|++..++.++++++++++...
T Consensus 293 ~~~~~i~~~~~~~~~~~~~~~ 313 (365)
T PRK15119 293 QAFVLITLAAALLASIGVLGE 313 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 4
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00 E-value=1e-53 Score=419.55 Aligned_cols=277 Identities=29% Similarity=0.382 Sum_probs=228.2
Q ss_pred ccccCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 014480 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLIL 184 (423)
Q Consensus 105 g~di~k~~~r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~~~~Kl~l 184 (423)
|+|+||+++ ++|||+||++++++++++..++..... ..+....+.+.+.++++|++||+.+++++.|+++
T Consensus 2 g~d~hk~~~----~~vP~~GGi~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~lG~~DD~~~l~~~~Kl~~ 71 (280)
T cd06856 2 GRDVHKPGK----PEVPEMGGIAVLLGFSLGLLFLSALTH------SVEALALLITSLLAGLIGLLDDILGLSQSEKVLL 71 (280)
T ss_pred CccccccCC----CCCCCcchHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHH
Confidence 678888754 489999999999999887765432211 1123345667788899999999999999999999
Q ss_pred HHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHH
Q 014480 185 PSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNI 264 (423)
Q Consensus 185 q~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~ 264 (423)
|++++.+++..+.+.+.+.+| +.+ ....++++++++.+++++++||+|++||+|||++|++++++.+++++++
T Consensus 72 ~~~aa~~l~~~~~~~~~~~~p-----~~~--~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~ 144 (280)
T cd06856 72 TALPAIPLLVLKAGNPLTSLP-----IGG--RVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILL 144 (280)
T ss_pred HHHHHHHHHHHHHhcceeecC-----ccc--hhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999998876545444444443 111 1222466778899999999999999999999999999999999988776
Q ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 014480 265 MQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNF 344 (423)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~ 344 (423)
.. ++..+..++++++++++|||+|||||||+||||+||+++|+++|++++.++++...+.++.|+++|+
T Consensus 145 ~~-----------~~~~~~~l~~~l~~a~lgFL~~N~~PAkiF~GD~GS~~lG~~la~~~i~~~~~~~~~il~~P~~id~ 213 (280)
T cd06856 145 IN-----------GDYDALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLILLLPYVIDF 213 (280)
T ss_pred Hc-----------CCHHHHHHHHHHHHHHHHHHHhhcCccceeccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 43 1233456778899999999999999999999999999999999999999999888888999999999
Q ss_pred HhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 014480 345 LLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNF--FLRLFGKMSEGSLCAALLVFQAIACCLC 411 (423)
Q Consensus 345 ~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l--~L~~~G~~se~~v~~~l~~i~~~~~~~~ 411 (423)
.+.++|.+...+|+ ||+++.+ +++++++.++.+.+|. +++++||++|||+|..+|.+|+++|+++
T Consensus 214 ~l~l~~~~~~~~~~-~~~~~~~-~~g~l~~~~~~~~~~~~~~l~~~g~~~E~~l~~~l~~i~~~~~~~~ 280 (280)
T cd06856 214 LLKLRSKGGGKEHR-EKPTKVL-EDGTLYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWALEALLGILA 280 (280)
T ss_pred HHHHHHhcCcccCC-CCCCeEC-CCCcEecCCCcCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887 9998877 9999999877766663 6777899999999999999999999863
No 5
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1.9e-52 Score=421.49 Aligned_cols=315 Identities=23% Similarity=0.288 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCC--CCcccCCCcchHHHHHHHHHHHHHHHhhccccchhh
Q 014480 73 ILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNW 150 (423)
Q Consensus 73 ~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r--~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~ 150 (423)
.......+++++++|++++|.++++++|.|+ ++|.++++++ +|+++|||+||++++++++++..++. ...+..
T Consensus 8 ~~~~~~~~~~af~is~~~~p~~i~~~~~~~~-~~~~~~~~p~~h~h~~~tP~~GGi~i~~~~~~~~~~~~--~~~~~~-- 82 (344)
T PRK00108 8 TFRALLALLTALLISLILGPRFIRFLRKLKF-GQPIREDGPQSHLKKAGTPTMGGILILLAIVISTLLWA--DLSNPY-- 82 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCccccccccccCCCCCCCcccHHHHHHHHHHHHHHH--hccchH--
Confidence 3555667778999999999999999999995 7666554433 46899999999999998877765432 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--------CCCchhhHHHHHHHHHHHHHHHH--hC--ceEEEecCCccccccccccc
Q 014480 151 LVEYNAALASICFMLLLGFVDDV--------LDVPWRVKLILPSFAALPLLMAY--AG--HTSIIIPKPLVPYVGLEILD 218 (423)
Q Consensus 151 l~~~~~~ll~~~~~~liG~iDD~--------~~l~~~~Kl~lq~~aa~~l~~~~--~g--~~~i~ip~~~~p~~g~~~~~ 218 (423)
....+.+...++++|++||+ ++++++.|+++|++++.++.... .| .+.+.+ |+.|...++
T Consensus 83 ---~~~~l~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~~~~~~-----p~~~~~~i~ 154 (344)
T PRK00108 83 ---VWLVLLVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTSTSLTI-----PFFKDLSLD 154 (344)
T ss_pred ---HHHHHHHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceEEe-----cCccccccc
Confidence 12234455667899999999 58999999999999988764321 11 223333 334422356
Q ss_pred ch-hHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhcc---C--CCchhhhhhHHHHHHHHHHHHH
Q 014480 219 LG-WIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGA---S--LDPEYKQAHAFSIYLVQPLLAT 292 (423)
Q Consensus 219 lg-~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~---~--~~~~~~~~~~~~~~l~l~l~ga 292 (423)
++ |++++++++++++++||+|++||+|||++|++++++.++++.++..... + ..|..++ +.....++++++|+
T Consensus 155 lg~~~~~~~t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ga 233 (344)
T PRK00108 155 LGVILYIPFAYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYLQGNAVFANYLHIPYIPG-AGELAIFCAALVGA 233 (344)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHcCchhhhhhhcccccCC-chHHHHHHHHHHHH
Confidence 67 7889999999999999999999999999999999999988876542100 0 0000001 11234678889999
Q ss_pred HHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCcc
Q 014480 293 SLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLL 372 (423)
Q Consensus 293 llgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hL 372 (423)
++|||+||||||||||||+||+++|+.+|++++..+++........+.++|....+ +.++.+|. +||++|++ +|+
T Consensus 234 llGFL~~N~~pAkIFMGD~GS~~LG~~la~~~i~~~~~~~~~~~~~~~l~d~~~~~--l~~~~~R~-~g~~~f~~--~hl 308 (344)
T PRK00108 234 CLGFLWFNAYPAQVFMGDTGSLALGGALAAIAVLLRQELLLLIIGGVFVIETLSVI--LQVGSFKL-TGKRIFRM--API 308 (344)
T ss_pred HHHHHHhcCCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--HHHHHHHh-cCCCCCCC--CCH
Confidence 99999999999999999999999999999999987654433344444444443321 12233466 79999986 788
Q ss_pred ccCCCchhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014480 373 TGTNDGTLVNFFLRLFGKMSEGSLCAALLVFQAIACCLCFVLRY 416 (423)
Q Consensus 373 h~~~~~~l~~l~L~~~G~~se~~v~~~l~~i~~~~~~~~l~~~~ 416 (423)
|| + +++.| +||+|++..+|.++.+++++++...+
T Consensus 309 HH---~------l~~~G-~s~~~vv~~~~~i~~~~~~~~~~~~~ 342 (344)
T PRK00108 309 HH---H------FELKG-WSETKVVVRFWIITLILALIGLATLK 342 (344)
T ss_pred HH---H------HHHcC-CChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87 2 66789 99999999999999999999987554
No 6
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-53 Score=423.23 Aligned_cols=304 Identities=21% Similarity=0.300 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014480 79 LSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (423)
Q Consensus 79 ~~~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~l 158 (423)
..++++++|+.++|.++++++|.+..| ++++++|+|+++||++||++++.+++++..++... .++...| ..+
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~--~~~~~~k~H~~~tP~mGGl~I~~~~~~~~~l~~~~-~~~~~~~-----~~l 79 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD--IPEDGPKSHKKGTPTMGGLAILLSILLASLLAANL-LTNPYVW-----LVL 79 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc--CCCccccccCCCCCCcchHHHHHHHHHHHHHHHHh-ccchHHH-----HHH
Confidence 567889999999999999999999864 45566677999999999999999999887665432 1222222 346
Q ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccch-hHHHHHHHHHHHHhhhh
Q 014480 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCTNS 237 (423)
Q Consensus 159 l~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg-~l~~~l~~l~iv~~~Na 237 (423)
++...++++|++||+.+++++.|.+.|..++.+++..+ +.... .....|+......+.+ +++++++++++++++||
T Consensus 80 ~~~~~~~~iG~lDD~~~l~~~~r~l~~~~~a~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~sNA 156 (319)
T COG0472 80 LGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIAL-GELPI--KFLDIPLGIPFFKLPGPLLFILFAVFAIVGASNA 156 (319)
T ss_pred HHHHHHHHHHHHHhHHHhhHHhhhHHHHHHHHHHHHHH-HHHHH--HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777889999999999999999999999887532222 21000 0001121111112234 78999999999999999
Q ss_pred chhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHH
Q 014480 238 INIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAG 317 (423)
Q Consensus 238 vNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG 317 (423)
+|++||+||||+|++.+++.++++.++... +.....++++++|+++|||+||+|||||||||+||+++|
T Consensus 157 vNl~DGlDGLa~g~~~i~~~~~~~i~~~~~-----------~~~~~~~~~al~ga~LGFL~~N~~PAkIFmGDtGSl~LG 225 (319)
T COG0472 157 VNLTDGLDGLAAGLSAIALLALALIALLQG-----------LGELALICAALAGACLGFLWFNFYPAKIFMGDTGSLALG 225 (319)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhcCChhhhcCCchhhHHHH
Confidence 999999999999999999999998877542 233457899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCC-CCCCCCCCCccccCCCchhHHHHHHHhCC--CChH
Q 014480 318 MTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHR-LPGFNPQTGLLTGTNDGTLVNFFLRLFGK--MSEG 394 (423)
Q Consensus 318 ~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~-~~~f~~d~~hLh~~~~~~l~~l~L~~~G~--~se~ 394 (423)
+++|++++.++++.. +....| +....++++.+++||.++| +++..||+.|+|| | +++.|. |+|+
T Consensus 226 ~~la~iail~~~~~~-l~~~~~---~~v~v~et~~vil~r~~~~~~~~~~~~~~~~HH---~------~~~~g~~~~~e~ 292 (319)
T COG0472 226 AALAAIALLLKQEIL-LAIIGP---LGVPVIETLSVILRRLSFKLKPIRLPDMAHLHH---H------LELKGLSEWSER 292 (319)
T ss_pred HHHHHHHHHHhCchh-hhhhhh---hhHHHHHHHHHHHHHHHhccCCCCCcCCCCchH---H------HHHcCCccCccc
Confidence 999999999998777 555556 2344556788899998666 6778889999998 3 676674 6789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014480 395 SLCAALLVFQAIACCLCFVLRYF 417 (423)
Q Consensus 395 ~v~~~l~~i~~~~~~~~l~~~~~ 417 (423)
|++..+|.++++++.+++...+.
T Consensus 293 ~vv~~~w~i~~i~~~i~l~~~~~ 315 (319)
T COG0472 293 QVVLRFWLISLILALIALLLLKS 315 (319)
T ss_pred eehHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999877654
No 7
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00 E-value=8.6e-53 Score=413.27 Aligned_cols=276 Identities=61% Similarity=1.053 Sum_probs=213.5
Q ss_pred HHHHHHHHHcCccccccCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHHHHHHHHHH
Q 014480 92 PVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTA--DSNWLVEYNAALASICFMLLLGF 169 (423)
Q Consensus 92 p~~~~~~~r~gl~g~di~k~~~r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~--~~~~l~~~~~~ll~~~~~~liG~ 169 (423)
|.++++++|+|++|+|.||+ |+++|||+||++++++++++..+......+. +.....++...+.+...++++|+
T Consensus 2 p~~i~~~~~~~l~~~d~~k~----~~~~vP~~GGlai~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~ 77 (283)
T cd06855 2 PKFGPLFIKAGLYGIDLNKN----GEEKIPESAGLVPGIVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLGF 77 (283)
T ss_pred hhHHHHHHHCCCcccCCCCC----CCCCCCCcCcHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998877655 4579999999999999988765532221000 00001123345666777899999
Q ss_pred hhccCCCchhhHHHHHHHHHHHHHHHHhCce---EEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchh
Q 014480 170 VDDVLDVPWRVKLILPSFAALPLLMAYAGHT---SIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNG 246 (423)
Q Consensus 170 iDD~~~l~~~~Kl~lq~~aa~~l~~~~~g~~---~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDG 246 (423)
+||+++++++.|+++|++++.+++..+.+.. ...+| +.|+.+. .++++|++++++++++++++||+|++||+||
T Consensus 78 lDD~~~l~~~~Kl~~q~~aa~~~~~~~~~~~~~~~~~~p--~~~~~~~-~i~l~~l~~~lt~~~iv~~~Na~N~~DGlDG 154 (283)
T cd06855 78 ADDVLDLRWRHKLILPTFASLPLLMVYYGNTGITLPIVP--LRPLLGT-LIDLGILYYVYMILLAVFCTNSINIYAGING 154 (283)
T ss_pred hhchhccCchHHHHHHHHHHHHHHHHHhcccccceeecc--hhhcccc-cccccHHHHHHHHHHHHHHhhhhhhhcccch
Confidence 9999999999999999999987543333321 11121 1112221 3577899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHH
Q 014480 247 LEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGIL 326 (423)
Q Consensus 247 La~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~ 326 (423)
|++|++++++.++++.++....+.......+++.....++++++|+++|||+||||||||||||+||+++|+.+|++++.
T Consensus 155 La~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ga~lGFL~~N~~PAkIFMGD~GSl~LG~~la~~~i~ 234 (283)
T cd06855 155 LEVGQSLVIALSILLYNLLELNGSSGSMTLDAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDTFTYFAGMVFAVVGIL 234 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhcCCCccceeeechHHHHHHHHHHHHHHH
Confidence 99999999999988876542111000000012233456788999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCcccc
Q 014480 327 GHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTG 374 (423)
Q Consensus 327 ~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~ 374 (423)
++++........|+++|+++.+|++.+++||.+||+++|++||+|+.+
T Consensus 235 ~~~~~~~~~~~~p~~~~~~l~~P~~~~~~~r~~~~~~~~~~d~~hl~~ 282 (283)
T cd06855 235 GHFSKTLLLFFIPQIINFLYSLPQLFGIVPCPRHRLPKFNPKTGLLEP 282 (283)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHhheeeeccccCCCCCCCCcCCCCC
Confidence 988777778889999999999999999999999999999999999876
No 8
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00 E-value=5.2e-52 Score=402.64 Aligned_cols=250 Identities=22% Similarity=0.289 Sum_probs=191.6
Q ss_pred CCCCCCC-CcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 014480 109 NKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSF 187 (423)
Q Consensus 109 ~k~~~r~-H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~~~~Kl~lq~~ 187 (423)
|+||+|| |+++|||+||++++.+++++..++......... +....+.+...++++|++||+++++++.|+.+|++
T Consensus 3 D~P~~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~ 78 (253)
T cd06854 3 DIPNERSSHTKPTPRGGGIAFVLAFLLALLLAAAAGPLNDL----SYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQLL 78 (253)
T ss_pred CCCCCCCCCCCCcCCcChHHHHHHHHHHHHHHHHccccchh----HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 6888888 999999999999999888776554322111111 11234556677889999999999999999999999
Q ss_pred HHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHh
Q 014480 188 AALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQI 267 (423)
Q Consensus 188 aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~ 267 (423)
++.+++..+.....+ .+ ..+.+|++++++++++++++||+|++||+|||++|++++++.++++.++..
T Consensus 79 ~a~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~~~~~~~- 146 (253)
T cd06854 79 AAALALYALGPLTSL---------LL--NFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLGYLA- 146 (253)
T ss_pred HHHHHHHHhhhHhhh---------cc--hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 887654322110100 01 234578899999999999999999999999999999999999988776542
Q ss_pred ccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q 014480 268 GASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLS 347 (423)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~ 347 (423)
++.....++++++|+++|||+||+||||+||||+||+++|++++++++.+.+++... ..|.++.....
T Consensus 147 ----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~~i~~~~~~~~~--~~~l~~~~~p~ 214 (253)
T cd06854 147 ----------GEPALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALSGQSP--WAWLLLLSPFL 214 (253)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHhhCChhhcccccccHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHH
Confidence 122334678889999999999999999999999999999999999999886543221 22333323344
Q ss_pred hchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHH
Q 014480 348 VPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSL 396 (423)
Q Consensus 348 lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~se~~v 396 (423)
++++.+++||.++||++|+|||+|+||. +.+.| +||+|+
T Consensus 215 ~D~~~~i~~R~~~g~~~~~~dr~Hlhh~---------l~~~g-~s~~~v 253 (253)
T cd06854 215 VDATVTLLRRLLRGENIFQAHRKHLYQR---------LARAG-KSHRKV 253 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCchhhHHHH---------HHHcC-CCCCCC
Confidence 4577889999999999999999999994 66678 999874
No 9
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1.1e-50 Score=400.86 Aligned_cols=284 Identities=22% Similarity=0.221 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCCCCC--CCcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014480 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (423)
Q Consensus 81 ~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r--~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~l 158 (423)
+.++++|.+++|.++++++|+|+ +||+++++++ +||++||++||++++.+++++..++..+...+.. +....+
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~-~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~----~~~~~l 76 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGW-GQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGE----RELLIM 76 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccch----HHHHHH
Confidence 35788899999999999999996 7888776643 3788999999999999888776543212111111 111234
Q ss_pred HHHHHHHHHHHhhccCC------------CchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHH
Q 014480 159 ASICFMLLLGFVDDVLD------------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLY 226 (423)
Q Consensus 159 l~~~~~~liG~iDD~~~------------l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l 226 (423)
.+...++++|++||+.+ ++++.|+.+|++++..+...... . -+....|+ ..+++++++
T Consensus 77 ~~~~~~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~---~-~~~~~~~~------~~~~~~~~~ 146 (304)
T PRK14655 77 LAALAMGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAP---L-ASHELLPS------LGPVFDVLL 146 (304)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhc---c-cccccccc------hhhHHHHHH
Confidence 56677889999999874 45678999999988765321110 0 00111121 136889999
Q ss_pred HHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCee
Q 014480 227 MFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSV 306 (423)
Q Consensus 227 ~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkI 306 (423)
+++++++++||+|++||+||||+|++.+++.+++..+ .++.+++|+++|||+||+|||||
T Consensus 147 ~~~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~~~--------------------~~~~~l~Ga~lGFL~fN~~PAkI 206 (304)
T PRK14655 147 IALVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLAVS--------------------PVSALLVAVLLGFLWFNAHPARV 206 (304)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhcCcccE
Confidence 9999999999999999999999999999888765321 24677999999999999999999
Q ss_pred ccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHH
Q 014480 307 FVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLR 386 (423)
Q Consensus 307 FmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~ 386 (423)
||||+||+++|+.+|.+++..+++........-+++|.+..+-|...+..+ +|| .|. +.+.||| +|
T Consensus 207 FMGDtGSl~LG~~la~~ai~~~~~~~l~i~g~ifv~e~lSviiQv~~fk~~-gkr--if~-----maPiHhH------fe 272 (304)
T PRK14655 207 FMGDMGSHAIGAVAAGAYILYADVWLLPIAAIIPVVAVLSVVIQVASFRLR-GKR--VFR-----MSPIQHH------FE 272 (304)
T ss_pred EeeccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhheeEEEEEEEEc-Cee--ecc-----CCchHHH------HH
Confidence 999999999999999999999998777777777888888888887777643 233 342 5666667 88
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 014480 387 LFGKMSEGSLCAALLVFQAIACCLCFVL 414 (423)
Q Consensus 387 ~~G~~se~~v~~~l~~i~~~~~~~~l~~ 414 (423)
+.| |||.|++.++|.++.+++++++++
T Consensus 273 ~~G-w~e~~iv~~fwii~~~~~~~~~~~ 299 (304)
T PRK14655 273 LSG-WPETHVTLRFWVVTAIATAAVWWL 299 (304)
T ss_pred hcC-CCcceehhhHHHHHHHHHHHHHHH
Confidence 899 999999999999999999988654
No 10
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=2e-50 Score=399.48 Aligned_cols=288 Identities=24% Similarity=0.365 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccccccCCCCCCCC--cccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Q 014480 82 AGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (423)
Q Consensus 82 ~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~H--~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll 159 (423)
++|++|.+++|.++++++|+|+ ++|+||+++++| |++||++||++++.+.++...+ . ...+ ..++
T Consensus 4 ~sf~~s~~~~p~~i~~~~k~~~-~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~----~---~~~~-----~~l~ 70 (302)
T PRK14654 4 ANFLLNLFLYPILIKLFRRRRI-GQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMI----S---KTNT-----MVLL 70 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCcccccccccccCCCCCcCCcHHHHHHHHHHHHH----H---HHHH-----HHHH
Confidence 4788999999999999999996 778888888778 8899999999998754433211 1 0111 2345
Q ss_pred HHHHHHHHHHhhccCC--------CchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHH
Q 014480 160 SICFMLLLGFVDDVLD--------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLA 231 (423)
Q Consensus 160 ~~~~~~liG~iDD~~~--------l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~i 231 (423)
+...++++|++||+.+ ++++.|+++|++++.+++. +.. ... ..|+++. .+++|+++++++++++
T Consensus 71 ~~~~~~~iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~-~~~-~~~-----~~~~~~~-~~~lg~~~~~~~~~~i 142 (302)
T PRK14654 71 GMFLFFLIGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLL-LIR-PET-----NVDFFGF-TIEMGKWYYLFALLVI 142 (302)
T ss_pred HHHHHHHHHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHH-HHh-hcc-----ccccccc-cccccHHHHHHHHHHH
Confidence 6677889999999994 6889999999999987632 221 111 2344553 3567888899999999
Q ss_pred HHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCcc
Q 014480 232 VFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDT 311 (423)
Q Consensus 232 v~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDt 311 (423)
++++||+|++||+|||++|++++.+..+. .+... +......+.+++|+++|||+||+||||+||||+
T Consensus 143 v~~~NavNl~DGlDGLa~g~~~~~~~~~~--~~~~~-----------~~~~~~~~~~l~gallGFL~~N~~PAkIFMGDt 209 (302)
T PRK14654 143 VGSSNAMNLTDGLDGLAGWIYVSGSIPYW--FFLKE-----------RGVSEDILLILGAGVLAFLVFNSKPAKIFMGDT 209 (302)
T ss_pred HHHHHHhHHhhccchHHHHHHHHHHHHHH--HHhcc-----------ccHHHHHHHHHHHHHHHHHhhcCChhheeccch
Confidence 99999999999999999998765543222 11110 111124578899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCC
Q 014480 312 YTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKM 391 (423)
Q Consensus 312 GS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~ 391 (423)
||+++|+.+|++++..+++.........++.|.+..+-|+..+.. +||..|+ .|+.||| +|+.| |
T Consensus 210 GSl~LG~~la~~~i~~~~~~~~~i~~~~~v~e~lsviiQv~~~~~---~~rrif~-----~~p~Hhh------~e~~G-w 274 (302)
T PRK14654 210 GSITLGGVLGTVSVLTKTEFYLVLFFLIPVIETLSVILQVGSFKI---FKRRIFR-----MSPLHHH------FELIG-W 274 (302)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCceeee-----cCccHHH------HHHcC-C
Confidence 999999999999999887665555555566777666667654443 3455665 4555556 88889 9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014480 392 SEGSLCAALLVFQAIACCLCFVLRYFL 418 (423)
Q Consensus 392 se~~v~~~l~~i~~~~~~~~l~~~~~~ 418 (423)
||+|++..+|.+++++|++++..+..+
T Consensus 275 ~e~~iv~~f~~i~~~~~~~~~~~~~~~ 301 (302)
T PRK14654 275 SEEKIVAVFTVFNLISSLVVLEIFGVI 301 (302)
T ss_pred CcceehHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999998776543
No 11
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=100.00 E-value=4.6e-50 Score=400.70 Aligned_cols=300 Identities=22% Similarity=0.259 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHcCccccccCCCCCCC--CcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHH
Q 014480 88 QKMIPVASRYVLRRNLFGYDINKKGTPQ--GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFML 165 (423)
Q Consensus 88 ~~~~p~~~~~~~r~gl~g~di~k~~~r~--H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~ 165 (423)
.+++|.++++++|.|+.++ .+++++++ |+++|||+||++++.+++++..++.. ..++.. ...+.+...++
T Consensus 2 ~~~~p~~i~~~~r~~~~~~-~~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~~~ 73 (321)
T TIGR00445 2 LLLGPKVIPMLKKLKAGQV-IRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQ--LGNPYV-----LLVLFVLLGYG 73 (321)
T ss_pred EEeHHHHHHHHHHhCCCCC-cccccchhccCCCCCCCcChHHHHHHHHHHHHHHHH--ccchHH-----HHHHHHHHHHH
Confidence 3568999999999997643 34444333 66799999999999988877654321 111111 12344555678
Q ss_pred HHHHhhccC--------CCchhhHHHHHHHHHHHHHHH--HhCc-eEEEecCCcccccccccccchhHHHHHHHHHHHHh
Q 014480 166 LLGFVDDVL--------DVPWRVKLILPSFAALPLLMA--YAGH-TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFC 234 (423)
Q Consensus 166 liG~iDD~~--------~l~~~~Kl~lq~~aa~~l~~~--~~g~-~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~ 234 (423)
++|++||++ +++++.|+++|++++.++... +.|. +.+.. |+.+...++++++++++++++++++
T Consensus 74 ~iG~~DD~~~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~~lg~~~~~~~~~~iv~~ 148 (321)
T TIGR00445 74 FIGFVDDYRKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPDTFIYI-----PFIKDFMFDLGLFYILLAYFVLVGT 148 (321)
T ss_pred HHHHHHhHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEec-----cccccccccccHHHHHHHHHHHHHH
Confidence 999999999 599999999999998775421 2232 22222 3333223567888999999999999
Q ss_pred hhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccC-----CCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccC
Q 014480 235 TNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGAS-----LDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVG 309 (423)
Q Consensus 235 ~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~-----~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmG 309 (423)
+||+|++||+|||++|++++++.++++.++...... ..|..++.. ....++++++|+++|||+|||||||+|||
T Consensus 149 ~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~g~~~~~~~l~~~~~~~~~-~~~~~~~~l~ga~lgFL~fN~~pAkIFMG 227 (321)
T TIGR00445 149 SNAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPYLKDSG-ELVIFCTALVGASLGFLWFNAYPAKVFMG 227 (321)
T ss_pred hhhhhhhcccchHhHHHHHHHHHHHHHHHHHccchhHhhhhcccccCcch-HHHHHHHHHHHHHHHHHHhhCChhheecc
Confidence 999999999999999999999999887765421000 001111111 12356788999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhC
Q 014480 310 DTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFG 389 (423)
Q Consensus 310 DtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G 389 (423)
|+||+++|+.+|++++..+++...+....|.++|....+. ...+|.++||++|++ .|+|| + +++.|
T Consensus 228 D~GS~~LG~~la~~~i~~~~~~~~l~~~~~~i~D~~~vi~---~v~~r~~~g~~~f~~--~~~Hh---~------l~~~G 293 (321)
T TIGR00445 228 DTGSLALGGALGAVAILTKNEILLVIMGGVFVIETLSVIL---QVGSYKTTKKRIFKM--APIHH---H------FELKG 293 (321)
T ss_pred chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCC--CchHH---H------HHHcC
Confidence 9999999999999999987654444555565665533221 223477789999988 56665 3 67789
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014480 390 KMSEGSLCAALLVFQAIACCLCFVLRY 416 (423)
Q Consensus 390 ~~se~~v~~~l~~i~~~~~~~~l~~~~ 416 (423)
+||+|++..+|.++.+++++++.+.+
T Consensus 294 -~s~~~v~~~~~~i~~~~~~~~~~~~~ 319 (321)
T TIGR00445 294 -WSEPRVVVRFWIISLLLALVALATLK 319 (321)
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999976443
No 12
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=8.5e-47 Score=371.01 Aligned_cols=266 Identities=23% Similarity=0.275 Sum_probs=195.4
Q ss_pred CCCcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccC--------CCchhhHHHHH
Q 014480 114 PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVL--------DVPWRVKLILP 185 (423)
Q Consensus 114 r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~--------~l~~~~Kl~lq 185 (423)
+.|+++|||+||++++.+++++..++... .+.. ....+.+...++++|++||++ +++++.|+++|
T Consensus 5 ~~h~~~~P~~GGiai~~~~~~~~~~~~~~--~~~~-----~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q 77 (280)
T cd06852 5 HLKKAGTPTMGGILFILAILISTLLWADL--DSPE-----VLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQ 77 (280)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHc--ccHH-----HHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHH
Confidence 45999999999999999888876554211 1111 112344556678999999999 56999999999
Q ss_pred HHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHH
Q 014480 186 SFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIM 265 (423)
Q Consensus 186 ~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~ 265 (423)
++++.++...+... ....+....|+.+...++++|++++++++++++++|++|++||+||+++|++++++.++++.++.
T Consensus 78 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~~ 156 (280)
T cd06852 78 FLIAIVFALLLYYF-NGSGTLITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYL 156 (280)
T ss_pred HHHHHHHHHHHHHh-cccccceeccccccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 99988765432110 00001011112222246778999999999999999999999999999999999999988877654
Q ss_pred HhccCCCchhhhhhHH-HHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 014480 266 QIGASLDPEYKQAHAF-SIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNF 344 (423)
Q Consensus 266 ~~~~~~~~~~~~~~~~-~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~~ 344 (423)
.. +.. ...++++++|+++|||+|||||||+||||+||+++|+.+|++++..+++...+....|.++|.
T Consensus 157 ~~-----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~lG~~la~~~i~~~~~~~~~i~~~~~l~d~ 225 (280)
T cd06852 157 AG-----------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGGVFVIEA 225 (280)
T ss_pred hc-----------ChhHHHHHHHHHHHHHHHHHHHhcCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 21 122 335677899999999999999999999999999999999999998866444444455555554
Q ss_pred HhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 014480 345 LLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSLCAALLVFQAIACCLCFV 413 (423)
Q Consensus 345 ~l~lp~l~~i~rR~~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~se~~v~~~l~~i~~~~~~~~l~ 413 (423)
...+ +.++.+|.+ ||++|+ ++|+||. +++.| +||+|++..++.++.++++++++
T Consensus 226 ~~~~--~~~~~~r~~-g~~~f~--~~h~hh~---------l~~~g-~s~~~v~~~~~~i~~~~~~~~~~ 279 (280)
T cd06852 226 LSVI--LQVGSFKLT-GKRIFK--MAPLHHH---------FELKG-WSETKVVVRFWIISLILALIGLL 279 (280)
T ss_pred HHHH--HHHHHHHHc-CCCCCC--CCCHHHH---------HHHcC-CChhHHHHHHHHHHHHHHHHHHh
Confidence 3322 223334556 889987 6788873 66678 99999999999999999998875
No 13
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00 E-value=3.3e-47 Score=368.29 Aligned_cols=241 Identities=26% Similarity=0.395 Sum_probs=183.4
Q ss_pred CCCcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 014480 114 PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLL 193 (423)
Q Consensus 114 r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~ 193 (423)
++|+++||++||++++++++++..++....... . .++...+++...++++|++||+++++++.|+..|++++.++.
T Consensus 2 k~H~~~~P~~GGi~i~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~~a~~~~ 77 (249)
T cd06853 2 KVHKGPIPRLGGLAIFLGFLLALLLALLFPFFL-L---PELLGLLAGATIIVLLGLLDDLFDLSPKVKLLGQILAALIVV 77 (249)
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHHHhcccch-h---HHHHHHHHHHHHHHheehHHhccCCCHHHHHHHHHHHHHHHH
Confidence 459999999999999998887765543221101 1 122234566677889999999999999999999999988764
Q ss_pred HHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCc
Q 014480 194 MAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDP 273 (423)
Q Consensus 194 ~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~ 273 (423)
. .+.....+ ..|+.+. ..+.+|++++++++++++++|++|++||+||+++|++++++..+.+.++...
T Consensus 78 ~--~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~~~~------ 145 (249)
T cd06853 78 F--GGGVILSL---LGPFGGG-IILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALLNG------ 145 (249)
T ss_pred H--hcCeeeec---ccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC------
Confidence 3 23211111 1232332 4566889999999999999999999999999999999999988887765431
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhhhchhh
Q 014480 274 EYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSE-TLLIFFLPQVLNFLLSVPQLF 352 (423)
Q Consensus 274 ~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~-~~~~~~~P~i~~~~l~lp~l~ 352 (423)
+.....++++++|+++||++|||||||+||||+||+++|+.+|++++..+++. .......|..+.....++++.
T Consensus 146 -----~~~~~~~~~~l~~a~lgFl~~N~~pakiFmGD~GS~~lG~~la~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~ 220 (249)
T cd06853 146 -----QVLVALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQKSSTAISPVVPLLILAVPLFDTLF 220 (249)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHhCCcccEEeeCchHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHH
Confidence 22234567889999999999999999999999999999999999999987652 122223344443344556788
Q ss_pred eeeecccCCCCCCCCCCCccccC
Q 014480 353 GFVKCPRHRLPGFNPQTGLLTGT 375 (423)
Q Consensus 353 ~i~rR~~~~~~~f~~d~~hLh~~ 375 (423)
+++||.++||++|+|||+|+||.
T Consensus 221 ~i~rR~~~g~~~f~~dr~Hlh~~ 243 (249)
T cd06853 221 VIIRRLLRGRSPFQADRDHLHHR 243 (249)
T ss_pred HHHHHHHcCCCCCCCCchhHHHH
Confidence 99999999999999999999993
No 14
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00 E-value=6.2e-45 Score=346.72 Aligned_cols=220 Identities=33% Similarity=0.468 Sum_probs=172.3
Q ss_pred ccccCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHH
Q 014480 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFT-ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLI 183 (423)
Q Consensus 105 g~di~k~~~r~H~~~~P~~GGiai~~~~li~~~l~~~~~~~-~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~~~~Kl~ 183 (423)
|+|+|||++ ++|||+||++++.+++++..++...... .++....++...+++...++++|++||+++++++.|+.
T Consensus 2 g~d~~k~~~----~~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~~l~~~~Kl~ 77 (223)
T cd06851 2 GKDMNKKGN----VMIPEPGGISILIGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRLTMGGWFKPV 77 (223)
T ss_pred CCCCCCCCC----CCCCCcchHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 689999865 5999999999999988876654321110 00000112223445566788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHH
Q 014480 184 LPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHN 263 (423)
Q Consensus 184 lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~ 263 (423)
.|++++.+++........+. .|+.+. .++.++++++++++++++++||+|++||+|||++|++++++.++++.+
T Consensus 78 ~q~~~a~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~ 151 (223)
T cd06851 78 ALAFAAAPILLLGAYDSNLD-----FPLFGG-SVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFALAISL 151 (223)
T ss_pred HHHHHHHHHHHHHHhcccee-----eccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 99999877643322222222 234442 456788899999999999999999999999999999999999988776
Q ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 014480 264 IMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLN 343 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~iaI~~~~~~~~~~~~~P~i~~ 343 (423)
+.. ++.....++++++|+++|||+||||||||||||+||+++|+.+|++++.++++......+.|+++|
T Consensus 152 ~~~-----------~~~~~~~~~~~l~gallgFL~~N~~PAkIFMGD~GS~~lG~~la~~~i~~~~~~~~~~~~~P~~i~ 220 (223)
T cd06851 152 LVQ-----------QNYEIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEVEKIAAVAFIPAIIN 220 (223)
T ss_pred HHc-----------cchHHHHHHHHHHHHHHHHHHhhcChhheeccchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 543 122234678899999999999999999999999999999999999999999988888999999999
Q ss_pred HH
Q 014480 344 FL 345 (423)
Q Consensus 344 ~~ 345 (423)
++
T Consensus 221 f~ 222 (223)
T cd06851 221 FF 222 (223)
T ss_pred hc
Confidence 85
No 15
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00 E-value=3.9e-40 Score=307.36 Aligned_cols=190 Identities=20% Similarity=0.294 Sum_probs=145.6
Q ss_pred CCCCC-CcccCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCc-hhhHHHHHHHH
Q 014480 111 KGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVP-WRVKLILPSFA 188 (423)
Q Consensus 111 ~~~r~-H~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l~-~~~Kl~lq~~a 188 (423)
||+|| |+++|||+||++++++++++..++.... .. +....+.+...++++|++||+++++ +|.|+++|+++
T Consensus 1 P~~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~~--~~-----~~~~l~~~~~~~~~iG~~DD~~~l~~~~~kl~~q~~~ 73 (193)
T cd06912 1 DGIQKFHTRPTPRIGGVAIFLGLLAGLLLLSLLS--GS-----LLLLLLLAALPAFLAGLLEDITKRVSPRIRLLATFLS 73 (193)
T ss_pred CCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc--ch-----HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH
Confidence 45555 9999999999999998877765432111 11 1112445566788999999999999 99999999999
Q ss_pred HHHHHHHHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhc
Q 014480 189 ALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIG 268 (423)
Q Consensus 189 a~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~ 268 (423)
+.++.. +.+.. ++....|+.+. .++.++++++++++++++++||+|++||+||+++|++++++..+++..+..
T Consensus 74 a~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~~~-- 146 (193)
T cd06912 74 ALLAVW-LLGAS---ITRLDLPGLDL-LLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAFQV-- 146 (193)
T ss_pred HHHHHH-HhcCc---cceeecccccc-chhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--
Confidence 886543 23321 11111233332 356688999999999999999999999999999999999999988776542
Q ss_pred cCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHH
Q 014480 269 ASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVV 323 (423)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~i 323 (423)
++.....++++++|+++|||+||+||||+||||+||+++|+.+++.
T Consensus 147 ---------g~~~~~~~~~~l~gallgFL~~N~~pAkiFmGD~GS~~lG~~la~l 192 (193)
T cd06912 147 ---------GDTDLAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWL 192 (193)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHhCChhheeccchhhHHHHHHHHHh
Confidence 1122335678899999999999999999999999999999999875
No 16
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00 E-value=2.3e-38 Score=293.59 Aligned_cols=181 Identities=33% Similarity=0.526 Sum_probs=140.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCC----chhhHHHHHHHHHHHHHH
Q 014480 119 KVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDV----PWRVKLILPSFAALPLLM 194 (423)
Q Consensus 119 ~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~l~~~~~~ll~~~~~~liG~iDD~~~l----~~~~Kl~lq~~aa~~l~~ 194 (423)
+|||+||++++.+++++..++.. ..+. +....+.+...++++|++||++++ |+|.|+.+|++++.++..
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~--~~~~-----~~~~~l~~~~~~~~iG~~DD~~~l~~gl~~~~kl~~q~~~a~~~~~ 73 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIP--HSNT-----LILLALLSGLVAGIVGFIDDLLGLKVELSEREKLLLQILAALFLLL 73 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHh--cchH-----HHHHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988877654321 1111 112245566778899999999999 999999999999887643
Q ss_pred HHhCceEEEecCCcccccccccccchhHHHHHHHHHHHHhhhhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCch
Q 014480 195 AYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE 274 (423)
Q Consensus 195 ~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~ 274 (423)
.......+.. |+ +. .++++|++++++++++++++||+|++||+|||++|++++++.++.+.++..
T Consensus 74 ~~~~~~~~~~-----~~-~~-~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~-------- 138 (185)
T cd06499 74 IGGGHTTVTT-----PL-GF-VLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLS-------- 138 (185)
T ss_pred HHHHhceeec-----Cc-cc-hhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHHc--------
Confidence 3222222222 22 32 457789999999999999999999999999999999999999988776643
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHHHHHHHHHHH
Q 014480 275 YKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVG 324 (423)
Q Consensus 275 ~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~lG~~la~ia 324 (423)
++.....++++++|+++|||+|||||||+||||+||+++|+.+++++
T Consensus 139 ---~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~a 185 (185)
T cd06499 139 ---GQTTSALLFIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAVA 185 (185)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHhCCccceecccHHHHHHHHHHHHhC
Confidence 12223456788999999999999999999999999999999999863
No 17
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=100.00 E-value=1.9e-33 Score=254.88 Aligned_cols=155 Identities=31% Similarity=0.545 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCceEEEecCCcccccccccccch-hHHHHHHHHHHHHhh
Q 014480 157 ALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (423)
Q Consensus 157 ~ll~~~~~~liG~iDD~~~l~~~~Kl~lq~~aa~~l~~~~~g~~~i~ip~~~~p~~g~~~~~lg-~l~~~l~~l~iv~~~ 235 (423)
.+.+...++++|++||+++++++.|+..|.+++.++...+.+.+.+.. |+.+ ...+++ +++++++++++++.+
T Consensus 4 ~l~~~~~~~~iG~~DD~~~l~~~~rl~~q~~~a~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~l~~~~i~~~~ 77 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLKGLSPRLRLLLQLLAALLLVFLGGGLTSLGI-----PFGG-GIINLGPWLAIILTVLWIVGFI 77 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhccccc-----ccCc-chHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999999999999999999887653322222222 2232 246666 778899999999999
Q ss_pred hhchhccCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHHhccccCCeeccCccchHH
Q 014480 236 NSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYF 315 (423)
Q Consensus 236 NavNl~DGlDGLa~G~~li~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGS~~ 315 (423)
||+|++||+||+++|++++++..+.+.++.. ++.....++.+++++++||++|||||||+||||+||++
T Consensus 78 Na~N~~DG~dGla~~~~~i~~~~l~~~~~~~-----------~~~~~~~~~~~l~~a~lgfl~~N~~pakiFmGD~GS~~ 146 (159)
T PF00953_consen 78 NAFNFMDGIDGLAAGVSIIALLALAVIAYLQ-----------GNYELAILCLALAGALLGFLIFNFPPAKIFMGDSGSLF 146 (159)
T ss_pred hHHHhhccCcchHHHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEeccHhHHH
Confidence 9999999999999999999999998877543 23334466788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 014480 316 AGMTMAVVGILGH 328 (423)
Q Consensus 316 lG~~la~iaI~~~ 328 (423)
+|+.++++++.+|
T Consensus 147 lG~~la~~~i~~~ 159 (159)
T PF00953_consen 147 LGFLLAVLAILGH 159 (159)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=82.58 E-value=0.24 Score=26.17 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.9
Q ss_pred ccCCCcchHHH
Q 014480 118 IKVPESLGIVV 128 (423)
Q Consensus 118 ~~~P~~GGiai 128 (423)
..||+|||+.+
T Consensus 2 ~gTPTMGGi~~ 12 (13)
T PF10555_consen 2 SGTPTMGGIVF 12 (13)
T ss_pred CCCccceeEEE
Confidence 47999999764
No 19
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=39.74 E-value=65 Score=32.43 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=16.2
Q ss_pred CccccccCCCCCCCCcccCCC
Q 014480 102 NLFGYDINKKGTPQGTIKVPE 122 (423)
Q Consensus 102 gl~g~di~k~~~r~H~~~~P~ 122 (423)
+..|+|+|+.++|..++|.|+
T Consensus 68 d~~DrdiD~~~~RT~~RPLps 88 (300)
T PRK12876 68 QIIDCAIDKKNPRTSSRVLPA 88 (300)
T ss_pred hHHHhcccCCCCCCCCCCCCC
Confidence 346888999998876777776
No 20
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=38.90 E-value=1.6e+02 Score=21.96 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014480 57 YLLFYHYKIESEL-QRSILINAGLSLAGFFITQKMIPVASRYVLR 100 (423)
Q Consensus 57 ~~~~~~~~~~~~~-~~~~l~~~~~~~~af~ls~~~~p~~~~~~~r 100 (423)
+..+......++. ++..-.......+++..+++..|..+|+..|
T Consensus 14 v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~kl~~~ 58 (60)
T PF11391_consen 14 VMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPLVRKLVER 58 (60)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555665544 6666666777778999999999999998776
No 21
>COG5373 Predicted membrane protein [Function unknown]
Probab=36.26 E-value=6.1e+02 Score=29.30 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=18.1
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014480 60 FYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (423)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl 103 (423)
.++|.+|+-+--|-.......+.+..+... -.+.||+++
T Consensus 150 LlkY~~E~gl~~p~vRl~~aAv~~lvL~~~-----Ge~lRr~~~ 188 (931)
T COG5373 150 LLKYAIEAGLFGPEVRLAGAAVLGLVLVAG-----GEWLRRKGF 188 (931)
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHh-----HHHHHhccC
Confidence 345666665534444444444334333222 344466663
No 22
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=27.92 E-value=3.4e+02 Score=22.27 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHhccc----hHHHHHHH-HHHHHHHHHHHHH
Q 014480 37 APPKSGLIFKLCLFFAIPYFYLLFYHYKIE----SELQRSIL-INAGLSLAGFFIT 87 (423)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l-~~~~~~~~af~ls 87 (423)
+.|..-....+.+.++=..|...+|...-+ +++-...+ +..++.+++|+.|
T Consensus 28 ~sp~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~~~Gf~mt 83 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLMIVGFLMT 83 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555543322 23444433 4444444555544
No 23
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=23.91 E-value=3.3e+02 Score=26.72 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH--hccchH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014480 40 KSGLIFKLCLFFAIPYFYLLFYH--YKIESE-L-QRSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (423)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl 103 (423)
+....++++-+...|...-.-.. .+..++ . .......++.++.||+++++.+..+.|+.+|.++
T Consensus 178 ~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~~~~~ 245 (259)
T PF02673_consen 178 DREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLKRRKL 245 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 44456778888888888744332 111111 1 2355566677788999999999999999988885
No 24
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=21.32 E-value=1.9e+02 Score=28.71 Aligned_cols=20 Identities=5% Similarity=0.185 Sum_probs=14.5
Q ss_pred ccccccCCCCCCCCcccCCC
Q 014480 103 LFGYDINKKGTPQGTIKVPE 122 (423)
Q Consensus 103 l~g~di~k~~~r~H~~~~P~ 122 (423)
..|+|+|+.++|..++|.|+
T Consensus 61 ~~Dr~iD~~~~RT~~RPL~s 80 (284)
T PRK12888 61 IIDREIDARNPRTAGRELVT 80 (284)
T ss_pred HHhhCCCCCCCCCCCCCCCC
Confidence 45778888888765667665
No 25
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=21.21 E-value=3.8e+02 Score=26.32 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=13.4
Q ss_pred ccccccCCCCCCCCcccCCC
Q 014480 103 LFGYDINKKGTPQGTIKVPE 122 (423)
Q Consensus 103 l~g~di~k~~~r~H~~~~P~ 122 (423)
+.|+|+|+.|+|+.++|.|+
T Consensus 69 ~~D~eiD~~n~rt~~RPl~s 88 (289)
T COG0382 69 LADREIDRINPRTKNRPLPS 88 (289)
T ss_pred HhhhhccCCCCCccCCCCCC
Confidence 36778888888755555554
No 26
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=21.01 E-value=2.9e+02 Score=19.97 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014480 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (423)
Q Consensus 72 ~~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl 103 (423)
.++.+++..++++.++-.....+.|..+|.+.
T Consensus 17 ~iv~AilIl~vG~~va~~v~~~~~~~l~~~~~ 48 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVRKLVRRLLEKRGV 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35566677778888888888888888888884
No 27
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=20.24 E-value=2.7e+02 Score=31.05 Aligned_cols=73 Identities=11% Similarity=0.017 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCCCCCCCccc
Q 014480 42 GLIFKLCLFFAIPYFYLLFYHYKI-ESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIK 119 (423)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~af~ls~~~~p~~~~~~~r~gl~g~di~k~~~r~H~~~ 119 (423)
|+....+.+++....|-+++.... .+.....+....+=.++..+++.++...+.++.+.+.. .|.+.|-|.+-
T Consensus 8 ~l~l~v~a~v~ai~~~~~l~~~t~i~~~~~~~~~~v~vnl~l~l~L~~vi~r~v~~l~~arr~-----Gka~sRLh~Ri 81 (712)
T COG5000 8 RLLLAVAAIVLAIVLCGLLAGTTPISPAFDYILALVAVNLALLLILSAVIGRKVIRLLKARRL-----GKAGSRLHVRI 81 (712)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchHHHHHHHH
Confidence 445555556666677755554333 33334333444444445667788888888887766663 35555557653
Done!