Query 014480
Match_columns 423
No_of_seqs 217 out of 1647
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 21.3 30 0.001 21.1 0.0 19 286-304 7-25 (26)
2 2xq2_A Sodium/glucose cotransp 14.2 4.3E+02 0.015 27.2 8.3 27 87-115 564-590 (593)
3 2kt5_B ICP27; chaperone, mRNA 9.4 1.9E+02 0.0064 19.1 2.2 8 3-10 12-19 (40)
4 1s5r_A High mobility group box 8.9 59 0.002 19.2 -0.3 7 1-7 16-22 (26)
5 2xq2_A Sodium/glucose cotransp 8.4 1.9E+02 0.0065 30.0 3.1 24 351-374 568-591 (593)
6 4b4a_A TATC, SEC-independent p 4.6 9.1E+02 0.031 22.1 5.1 33 67-99 8-40 (249)
7 2gpo_C Nuclear receptor-intera 4.4 4.5E+02 0.015 15.8 1.8 16 368-383 2-17 (26)
8 3tj3_C Nuclear pore complex pr 3.4 7E+02 0.024 20.4 2.8 9 35-43 44-52 (114)
9 3llq_A Aquaporin Z 2; aquapori 3.3 7.5E+02 0.026 22.8 3.4 48 366-414 5-52 (256)
10 1d4b_A CIDE B, human cell deat 3.3 8.5E+02 0.029 20.1 3.3 33 343-378 88-122 (122)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=21.28 E-value=30 Score=21.09 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhccccCC
Q 014480 286 VQPLLATSLALFSYNWYPS 304 (423)
Q Consensus 286 ~l~l~gallgFL~fN~~PA 304 (423)
....+|+.+|++.|.|.++
T Consensus 7 iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 7 IAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 3457899999999988764
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=14.19 E-value=4.3e+02 Score=27.22 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHHHcCccccccCCCCCCC
Q 014480 87 TQKMIPVASRYVLRRNLFGYDINKKGTPQ 115 (423)
Q Consensus 87 s~~~~p~~~~~~~r~gl~g~di~k~~~r~ 115 (423)
+..++-.-+|..+|+.- .|...||++.
T Consensus 564 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 590 (593)
T 2xq2_A 564 TILLISYGIKKLIKASY--KSGGSPGHHH 590 (593)
T ss_dssp HHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCccc
Confidence 44444444444444442 2566666654
No 3
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=9.42 E-value=1.9e+02 Score=19.10 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.8
Q ss_pred hhccccch
Q 014480 3 ARKRASSR 10 (423)
Q Consensus 3 ~~~~~~~~ 10 (423)
+|||+++.
T Consensus 12 ~RR~~s~~ 19 (40)
T 2kt5_B 12 ARRPSCSP 19 (40)
T ss_dssp SCCCCCCC
T ss_pred ccCcCCCc
Confidence 45555443
No 4
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=8.95 E-value=59 Score=19.23 Aligned_cols=7 Identities=57% Similarity=0.828 Sum_probs=3.4
Q ss_pred Chhhccc
Q 014480 1 MAARKRA 7 (423)
Q Consensus 1 ~~~~~~~ 7 (423)
|++|||+
T Consensus 16 mar~r~a 22 (26)
T 1s5r_A 16 MARQRRA 22 (26)
T ss_dssp HHHTTTC
T ss_pred HHHHhhh
Confidence 4545444
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.38 E-value=1.9e+02 Score=29.99 Aligned_cols=24 Identities=8% Similarity=-0.265 Sum_probs=2.9
Q ss_pred hheeeecccCCCCCCCCCCCcccc
Q 014480 351 LFGFVKCPRHRLPGFNPQTGLLTG 374 (423)
Q Consensus 351 l~~i~rR~~~~~~~f~~d~~hLh~ 374 (423)
+..-+||.+|+.+.=.+..+|-||
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~ 591 (593)
T 2xq2_A 568 ISYGIKKLIKASYKSGGSPGHHHH 591 (593)
T ss_dssp HHHHHC------------------
T ss_pred HHHHHHHHhcCCCCCCCCCCcccC
Confidence 344456665554432244566554
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=4.58 E-value=9.1e+02 Score=22.06 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014480 67 SELQRSILINAGLSLAGFFITQKMIPVASRYVL 99 (423)
Q Consensus 67 ~~~~~~~l~~~~~~~~af~ls~~~~p~~~~~~~ 99 (423)
+|+|+.++.+++..++++++++....-+..+..
T Consensus 8 ~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~ 40 (249)
T 4b4a_A 8 RELRYRLIISIIAFLIGSGIAFYFAKYVFEILK 40 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999998888776666544
No 7
>2gpo_C Nuclear receptor-interacting protein 1; estrogen related receptor, ERR, ERRG, ESRRG, steroid receptor, RIP140, transcription; 1.95A {Homo sapiens} PDB: 2gpp_C*
Probab=4.40 E-value=4.5e+02 Score=15.78 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=11.0
Q ss_pred CCCccccCCCchhHHH
Q 014480 368 QTGLLTGTNDGTLVNF 383 (423)
Q Consensus 368 d~~hLh~~~~~~l~~l 383 (423)
+|+|+.+..+++|+-.
T Consensus 2 ern~l~~~~n~SLLLh 17 (26)
T 2gpo_C 2 ERNNIKQAANNSLLLH 17 (26)
T ss_pred ccccCCCCCcchHHHH
Confidence 6788888777665433
No 8
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=3.39 E-value=7e+02 Score=20.36 Aligned_cols=9 Identities=22% Similarity=0.098 Sum_probs=6.8
Q ss_pred CCCCCccch
Q 014480 35 PIAPPKSGL 43 (423)
Q Consensus 35 ~~~~~~~~~ 43 (423)
.|.+|+.+.
T Consensus 44 kIkkaKRr~ 52 (114)
T 3tj3_C 44 AIKKAKRRN 52 (114)
T ss_dssp CCCCCCCCC
T ss_pred ccccccccC
Confidence 788888764
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=3.33 E-value=7.5e+02 Score=22.77 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCccccCCCchhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 014480 366 NPQTGLLTGTNDGTLVNFFLRLFGKMSEGSLCAALLVFQAIACCLCFVL 414 (423)
Q Consensus 366 ~~d~~hLh~~~~~~l~~l~L~~~G~~se~~v~~~l~~i~~~~~~~~l~~ 414 (423)
+-|++|-||-|||.=-|+.++... +-.+=+.-.+-..-+++...|...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-l~r~~laEflGT~lLv~~G~G~~~ 52 (256)
T 3llq_A 5 DDDDKHHHHHHHHHHENLYFQSYV-MGRKLLAEFFGTFWLVFGGCGSAV 52 (256)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 10
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=3.31 E-value=8.5e+02 Score=20.08 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHhhhc--hhheeeecccCCCCCCCCCCCccccCCCc
Q 014480 343 NFLLSVP--QLFGFVKCPRHRLPGFNPQTGLLTGTNDG 378 (423)
Q Consensus 343 ~~~l~lp--~l~~i~rR~~~~~~~f~~d~~hLh~~~~~ 378 (423)
+++..+| +.+.++ .+++....+....+||-|||
T Consensus 88 eYF~tLp~nT~lmvL---~~gq~W~p~~~~~~~~~~~~ 122 (122)
T 1d4b_A 88 DFFQLLEDDTCLMVL---QSGQSWSPTRSGVLHHHHHH 122 (122)
T ss_dssp HHHHHSSSCCCCCEE---CSSCCCCCCCCSCCTTCCCC
T ss_pred hHhhcCCCCCEEEEe---cCCCcccCCCcceeeeccCC
Done!