Query 014480
Match_columns 423
No_of_seqs 217 out of 1647
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 12:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014480.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014480hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 7.8 1.8E+02 0.013 18.6 3.5 32 359-401 3-34 (51)
2 d2gqba1 a.282.1.1 (A:1-130) Hy 7.0 1.9E+02 0.014 22.2 3.8 16 34-49 40-55 (130)
3 d1x6aa2 g.39.1.3 (A:42-75) Lim 4.2 45 0.0033 19.9 -1.4 12 304-315 6-17 (34)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 3.8 5.8E+02 0.042 16.9 4.9 29 74-102 6-34 (86)
5 d1q79a1 a.160.1.1 (A:215-364) 3.7 5.7E+02 0.041 19.7 4.8 28 91-130 10-37 (150)
6 d2cbia2 c.1.8.10 (A:179-495) H 3.5 95 0.0069 27.7 -0.4 16 296-311 214-234 (317)
7 d2choa2 c.1.8.10 (A:127-436) G 3.5 99 0.0072 27.5 -0.4 16 296-311 209-229 (310)
8 d2q66a1 a.160.1.1 (A:202-351) 3.0 5.9E+02 0.043 19.6 4.2 28 91-130 10-37 (150)
9 d1xrda1 f.3.1.1 (A:1-52) Light 2.4 5E+02 0.036 16.6 2.4 19 227-245 27-45 (52)
10 d1kf6c_ f.21.2.2 (C:) Fumarate 2.0 8.2E+02 0.06 18.3 3.7 25 391-415 103-127 (130)
No 1
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.84 E-value=1.8e+02 Score=18.60 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=22.4
Q ss_pred cCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHHHHHHH
Q 014480 359 RHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSLCAALL 401 (423)
Q Consensus 359 ~~~~~~f~~d~~hLh~~~~~~l~~l~L~~~G~~se~~v~~~l~ 401 (423)
++.+|.+.+|...+.+ |...| ++|.+....+.
T Consensus 3 ~~~~p~~~~~~~~l~~----------L~~MG-F~~~~a~~AL~ 34 (51)
T d2cpwa1 3 RQQRPGTIKHGSALDV----------LLSMG-FPRARAQKALA 34 (51)
T ss_dssp SCCSSCSSSCCCHHHH----------HHHHT-CCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHH----------HHHcC-CCHHHHHHHHH
Confidence 4556667777777766 45579 99988766554
No 2
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=7.02 E-value=1.9e+02 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=8.6
Q ss_pred CCCCCCccchHHHHHH
Q 014480 34 PPIAPPKSGLIFKLCL 49 (423)
Q Consensus 34 ~~~~~~~~~~~~~~~~ 49 (423)
++.+.+.+-+.+++--
T Consensus 40 ~~~~~~~VDV~aiLd~ 55 (130)
T d2gqba1 40 QPTAAPSIDVAPILDK 55 (130)
T ss_dssp CCCCCSSEECHHHHHH
T ss_pred CCCCCCcccHHHHHHH
Confidence 3445566666655443
No 3
>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.16 E-value=45 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=8.6
Q ss_pred CeeccCccchHH
Q 014480 304 SSVFVGDTYTYF 315 (423)
Q Consensus 304 AkIFmGDtGS~~ 315 (423)
-|+|.||.-||.
T Consensus 6 C~~fIgdgdsya 17 (34)
T d1x6aa2 6 CKVIIEDGDAYA 17 (34)
T ss_dssp TCCBCCTTSCEE
T ss_pred cccEEecCceEE
Confidence 377888877664
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.77 E-value=5.8e+02 Score=16.88 Aligned_cols=29 Identities=14% Similarity=0.386 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014480 74 LINAGLSLAGFFITQKMIPVASRYVLRRN 102 (423)
Q Consensus 74 l~~~~~~~~af~ls~~~~p~~~~~~~r~g 102 (423)
+.++....++..++......+.|..+|.+
T Consensus 6 l~~l~il~i~~~i~~~i~~~~~~~~~~~~ 34 (86)
T d2vv5a3 6 VAALAIIIVGLIIARMISNAVNRLMISRK 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444555555555555555555443
No 5
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.65 E-value=5.7e+02 Score=19.68 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCccccccCCCCCCCCcccCCCcchHHHHH
Q 014480 91 IPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGA 130 (423)
Q Consensus 91 ~p~~~~~~~r~gl~g~di~k~~~r~H~~~~P~~GGiai~~ 130 (423)
...++-+|+|+|+.+ ++-|- .|||...+
T Consensus 10 lR~IKlWAk~RGIYs---n~~Gf---------lGGI~waI 37 (150)
T d1q79a1 10 LRAIKLWAKRHNIYS---NILGF---------LGGVSWAM 37 (150)
T ss_dssp HHHHHHHHHHTTCBC---TTTTS---------BCHHHHHH
T ss_pred HHHHHHHHHHccccc---ccccc---------cHHHHHHH
Confidence 345677899999875 44443 68887643
No 6
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=3.51 E-value=95 Score=27.69 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHhcccc-----CCeeccCcc
Q 014480 296 LFSYNWY-----PSSVFVGDT 311 (423)
Q Consensus 296 FL~fN~~-----PAkIFmGDt 311 (423)
++|.||| |.|+|||.-
T Consensus 214 ~iWDNypvNDy~~~rL~lGp~ 234 (317)
T d2cbia2 214 AVWWNYPVTDYFKGKLALGPM 234 (317)
T ss_dssp EEEECCSCCTTSTTSCCCCCC
T ss_pred eEEeCccccCCCCCceeecCc
Confidence 7899997 889999954
No 7
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.46 E-value=99 Score=27.45 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHhcccc-----CCeeccCcc
Q 014480 296 LFSYNWY-----PSSVFVGDT 311 (423)
Q Consensus 296 FL~fN~~-----PAkIFmGDt 311 (423)
++|.||| |.|+|||.-
T Consensus 209 ~iWDNypvNDy~~~rL~lGp~ 229 (310)
T d2choa2 209 YIWWNFPVSDYVRDHLLLGPV 229 (310)
T ss_dssp EEEECCSCCTTSTTCCCCSCC
T ss_pred eEEEcccccCCCcCceEeccc
Confidence 7899997 889999974
No 8
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.01 E-value=5.9e+02 Score=19.59 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCccccccCCCCCCCCcccCCCcchHHHHH
Q 014480 91 IPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGA 130 (423)
Q Consensus 91 ~p~~~~~~~r~gl~g~di~k~~~r~H~~~~P~~GGiai~~ 130 (423)
...++-+|+|+|+.+ ++-|- .|||...+
T Consensus 10 lR~IK~WAk~RGIYs---n~~Gy---------lGGI~waI 37 (150)
T d2q66a1 10 LRAIKLWAQRRAVYA---NIFGF---------PGGVAWAM 37 (150)
T ss_dssp HHHHHHHHHHTTCCC---GGGTS---------CCHHHHHH
T ss_pred HHHHHHHHHHccccc---ccccc---------cHHHHHHH
Confidence 445678899999875 44443 68887643
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.37 E-value=5e+02 Score=16.56 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhchhccCch
Q 014480 227 MFLLAVFCTNSINIHAGLN 245 (423)
Q Consensus 227 ~~l~iv~~~NavNl~DGlD 245 (423)
++=.+..+++-+|..||-+
T Consensus 27 ~IHfiLLSt~rfNWleg~~ 45 (52)
T d1xrda1 27 LIHFILLSTERFNWLEGAS 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhccCccccccCCC
Confidence 3334556889999999865
No 10
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.04 E-value=8.2e+02 Score=18.35 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 014480 391 MSEGSLCAALLVFQAIACCLCFVLR 415 (423)
Q Consensus 391 ~se~~v~~~l~~i~~~~~~~~l~~~ 415 (423)
+.++-++...|+..++.|++++.+-
T Consensus 103 ~~~~~iv~~~wa~~~~vsvv~L~va 127 (130)
T d1kf6c_ 103 MGPEPIIKSLWAVTVVATIVILFVA 127 (130)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888898888888887653
Done!