Query 014481
Match_columns 423
No_of_seqs 495 out of 2954
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 7.2E-31 2.5E-35 251.5 29.5 275 112-404 24-327 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.8E-32 3E-36 258.7 20.4 288 112-403 26-321 (451)
3 2gfp_A EMRD, multidrug resista 100.0 2.7E-29 9.1E-34 235.7 18.7 261 117-401 3-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 4.4E-26 1.5E-30 221.5 22.1 286 118-404 17-351 (491)
5 4gc0_A D-xylose-proton symport 99.9 1.6E-26 5.6E-31 224.6 18.5 290 114-404 12-344 (491)
6 2cfq_A Lactose permease; trans 99.9 7.6E-23 2.6E-27 194.4 13.0 271 119-404 12-291 (417)
7 2xut_A Proton/peptide symporte 99.8 3.6E-21 1.2E-25 188.4 12.8 169 119-288 17-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 7.8E-16 2.7E-20 147.4 14.6 175 116-290 254-434 (451)
9 2cfq_A Lactose permease; trans 99.5 7E-14 2.4E-18 132.6 13.9 141 148-289 258-399 (417)
10 3o7q_A L-fucose-proton symport 99.5 1.7E-13 5.7E-18 130.6 14.8 159 122-284 266-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.4 2.5E-12 8.7E-17 124.4 12.5 165 125-290 294-472 (491)
12 4gc0_A D-xylose-proton symport 99.4 3.7E-11 1.3E-15 116.2 19.2 181 114-295 277-469 (491)
13 2gfp_A EMRD, multidrug resista 99.2 3.5E-11 1.2E-15 112.1 6.8 158 116-276 201-363 (375)
14 2xut_A Proton/peptide symporte 98.9 2.7E-09 9.1E-14 104.0 8.2 140 150-289 336-502 (524)
15 2g9p_A Antimicrobial peptide l 61.1 4 0.00014 19.6 1.2 14 168-181 2-15 (26)
16 3hd6_A Ammonium transporter RH 29.3 3.6E+02 0.012 25.2 12.1 30 230-259 335-364 (490)
17 2jln_A MHP1; hydantoin, transp 28.3 2.7E+02 0.0093 26.1 9.4 51 232-282 20-72 (501)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.2e-31 Score=251.47 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=232.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (423)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 191 (423)
++..+..+++..+...+......+.+|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 45666677777888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH--HhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhh-hccC-
Q 014481 192 ATALLP--LLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPII-ENLG- 267 (423)
Q Consensus 192 ~~~~~~--~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~~g- 267 (423)
+.+++. ...++++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++||.+++.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887662 345778999999999999999999999999999999999999999999999999999999999998 5544
Q ss_pred ------------------------chHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccc
Q 014481 268 ------------------------WESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGES 323 (423)
Q Consensus 268 ------------------------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (423)
||+.|++.+++.++..+..++.+.++.++..+.++++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------------ 245 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------------------ 245 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------------------
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------------------
Confidence 99999888877766655554443322221111110000
Q ss_pred cCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014481 324 LKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTY-FSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIAT 402 (423)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r 402 (423)
....++++++++|.++...+..++..........++|.| +++.+|++..+++.+..+..++.+++.++.|++.||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~ 325 (438)
T 3o7q_A 246 SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH 325 (438)
T ss_dssp SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 001135788999999999999999988899999999999 8888899999999999999999999999999999999988
Q ss_pred CC
Q 014481 403 GV 404 (423)
Q Consensus 403 ~~ 404 (423)
+.
T Consensus 326 ~~ 327 (438)
T 3o7q_A 326 KV 327 (438)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.98 E-value=8.8e-32 Score=258.74 Aligned_cols=288 Identities=16% Similarity=0.199 Sum_probs=235.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHH
Q 014481 112 RYKLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSL 191 (423)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 191 (423)
+++.+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 466777888888888899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC
Q 014481 192 ATALLPLL----AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG 267 (423)
Q Consensus 192 ~~~~~~~~----~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 267 (423)
+.+++ .+ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++||.+++.+.+..|
T Consensus 105 ~~~~~-~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 105 VMLFM-GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHH-HHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHH-HhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98877 45 67788999999999999999999999999999999999999999999999999999999999888888
Q ss_pred -chHHHHHHHHHHHHHHHH-HHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHH
Q 014481 268 -WESVFYIFGLLGIAWFSG-FKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAH 345 (423)
Q Consensus 268 -w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (423)
||+.|++.+++.++..+. .++++|+++.......++.+... +.......+.....++..+++++++|.++...+..
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY--PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC---------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccc--cccchhhhhcccccccchHHHHHcCHHHHHHHHHH
Confidence 999999999888765444 45556554432211111100000 00000000001111111246788999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHh--hhcC
Q 014481 346 FCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNL--IATG 403 (423)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--~~r~ 403 (423)
++..........++|.|+++.+|+++.+++++.++..++.+++.++.|++.||+ ++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 999999999999999999988899999999999999999999999999999999 7764
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=2.7e-29 Score=235.66 Aligned_cols=261 Identities=17% Similarity=0.177 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHH
Q 014481 117 GTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALL 196 (423)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 196 (423)
..+++..++..+......+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45666777788888899999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHHHHHH
Q 014481 197 PLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVFYIFG 276 (423)
Q Consensus 197 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~ 276 (423)
...++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..|||+.|++.+
T Consensus 83 -~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 83 -VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred -HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999889999999988
Q ss_pred HHHHHHHH-HHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 014481 277 LLGIAWFS-GFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTC 355 (423)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (423)
++.++..+ ..+.+||+++.++++ +....++++++++|.++...+..++........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 88776655 344455443321110 001123568889999999999999999999999
Q ss_pred HhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 014481 356 LSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTSIAAQFADNLIA 401 (423)
Q Consensus 356 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~ 401 (423)
..++|.|+++.+|+++.+++.+.....++.+++.++.+++.||+++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998889999999999999999999999999999999986
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.94 E-value=4.4e-26 Score=221.54 Aligned_cols=286 Identities=16% Similarity=0.092 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhhhhhhhhhHHH-hhhh-----hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhH-hcCchHHHHHHHHHH
Q 014481 118 TTSLAFVICNMDKVNLSVAIIP-MSHR-----FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKI-FGGRKVLQTGVLIWS 190 (423)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~ 190 (423)
.+.+..+...+........++. +.++ +|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3444444444444444444333 4454 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCc--hhhHHHHHHhhhhhHHHHHHhhHHHhhhccCc
Q 014481 191 LATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEE--RSRAVSFVFGGLSFGSVAGLLLAPPIIENLGW 268 (423)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw 268 (423)
++.+++ ..+++++.++++|++.|++.+...+...++++|++|+++ |+.++++++.+.++|..+||.+++.+.+..||
T Consensus 97 ~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 97 LGHIVL-ALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp HHHHHH-HSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHH-HHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 988777 467777899999999999999999999999999999988 77888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc-CCcCcCCCCCcchhhhhhhhhhhh---------------hHH--------------
Q 014481 269 ESVFYIFGLLGIAWFSGFKILQE-GETSNGATLAPRSNYINMKKSLSA---------------SLE-------------- 318 (423)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-------------- 318 (423)
|+.|++.++..++.++..++..+ ..++............+..+..+. ...
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI 255 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhH
Confidence 99999988777666555444322 222111111110000000000000 000
Q ss_pred ----------hhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHH
Q 014481 319 ----------EMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLV 388 (423)
Q Consensus 319 ----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~ 388 (423)
....+.......+..+....+...+..++....+.....+++.|..+..+.+....+.+.....++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (491)
T 4aps_A 256 VAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLY 335 (491)
T ss_dssp HHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHH
Confidence 0000000000011111222444555556666666777788899998878888778888889999999999
Q ss_pred HHHHHHHhHHhhhcCC
Q 014481 389 TSIAAQFADNLIATGV 404 (423)
Q Consensus 389 ~~~~g~l~dr~~~r~~ 404 (423)
.++.+++.||++||+.
T Consensus 336 ~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQP 351 (491)
T ss_dssp HHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999998854
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.6e-26 Score=224.56 Aligned_cols=290 Identities=18% Similarity=0.218 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCC--------CcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHH
Q 014481 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGW--------NSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTG 185 (423)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~ 185 (423)
.+.+...++.++.+++...++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||++++++
T Consensus 12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~ 91 (491)
T 4gc0_A 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 334445566778888888899899998887743 345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-----------------hhhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhh
Q 014481 186 VLIWSLATALLPL-----------------LAGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGL 248 (423)
Q Consensus 186 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 248 (423)
.+++.++.+++++ .+++++.++++|+++|++.|+..+....+++|+.|+++|++..++.+.+.
T Consensus 92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence 9999999887753 47788999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhHHHhhhc--------cCchHHHHHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhh------
Q 014481 249 SFGSVAGLLLAPPIIEN--------LGWESVFYIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLS------ 314 (423)
Q Consensus 249 ~~g~~~g~~~~~~l~~~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 314 (423)
.+|.++++.++..+... .+||+.+.+..+..++.++..+++||+++....+.+.++.....++...
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 99999999888776543 3477777777777777777788888887654333332222111111000
Q ss_pred ---hhHHhhccccCCCcHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhhCCChhhHHHHHHHHHHHHHHHHH
Q 014481 315 ---ASLEEMGESLKDVPWKAIFRSKAVWAM-IYAHFCGSWGHYTCLSWLPTYFSEELSLNLTEAAWVSILPPLASVLVTS 390 (423)
Q Consensus 315 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 390 (423)
+..+...+..+.......++.+..... ....+....+.+.+..+.+.+.+. .+.+.........+.++..+++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 252 AVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHH
Confidence 000000111111112233333444333 333344444455566666666654 688888888888888999999999
Q ss_pred HHHHHhHHhhhcCC
Q 014481 391 IAAQFADNLIATGV 404 (423)
Q Consensus 391 ~~g~l~dr~~~r~~ 404 (423)
+++++.||+|||+.
T Consensus 331 ~~~~l~dr~Grr~~ 344 (491)
T 4gc0_A 331 LAIMTVDKFGRKPL 344 (491)
T ss_dssp HHHHHHHHHCSHHH
T ss_pred HHHHHHHhhcCcch
Confidence 99999999999854
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=7.6e-23 Score=194.44 Aligned_cols=271 Identities=11% Similarity=0.019 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHH-hhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHH
Q 014481 119 TSLAFVICNMDKVNLSVAIIP-MSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLP 197 (423)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~ 197 (423)
+....++.........+.+|. +.+++|++..+.|++.+++.++..++++++|+++||+|||++++++.+++++......
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~ 91 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF 91 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 333444445555566677776 5567999999999999999999999999999999999999999998877654321110
Q ss_pred --HhhhHH-HHHHHHHHHHHhhcccchHhHHHHHHhcCCC--CchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchHHH
Q 014481 198 --LLAGFM-PGLVLSRVLVGIGEGVSPSAATDLIARSIPL--EERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWESVF 272 (423)
Q Consensus 198 --~~~~~~-~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~~ 272 (423)
...... ..++..+++.|++.+...+.....+.++.++ ++++..+|....+..+|..++|.+++++.+ .+|++.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f 170 (417)
T 2cfq_A 92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVF 170 (417)
T ss_dssp HHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHH
Confidence 111111 1233455666665554444444444444432 456777888889999999999999999987 4899999
Q ss_pred HHHHHHHHHHHHHHHhhccCCcCcCCCCCcchhhhhhhhhhhhhHHhhccccCCCcHHHhhhcHHHHHHHHHHHHHHHHH
Q 014481 273 YIFGLLGIAWFSGFKILQEGETSNGATLAPRSNYINMKKSLSASLEEMGESLKDVPWKAIFRSKAVWAMIYAHFCGSWGH 352 (423)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (423)
++.++..++..+..++.++++++..++.++++. ..++.....+++++++|.++...+..++....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (417)
T 2cfq_A 171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY 236 (417)
T ss_dssp TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccccccccccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 887776554444444444332211100000000 000001112457888999988777666655566
Q ss_pred HHHHhhhhHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Q 014481 353 YTCLSWLPTYFSEELSL---NLTEAAWVSILPPLASVLVTSIAAQFADNLIATGV 404 (423)
Q Consensus 353 ~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~r~~ 404 (423)
.....++|.|+.+.++. +....+++.++..++.+++.++.+++.||+++|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 66667789888765542 23445777778888889999999999999998854
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=3.6e-21 Score=188.43 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhhhhhhhhHHH-hhhhhC------CCcchhhHHHHHHHHHHHhhhhhhhhHhhHh-cCchHHHHHHHHHH
Q 014481 119 TSLAFVICNMDKVNLSVAIIP-MSHRFG------WNSSVAGLVQSSFFWGYALSQLPGGWLAKIF-GGRKVLQTGVLIWS 190 (423)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~ 190 (423)
+.+..++..+..+...+.++. +.+++| .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444444455445555554 677889 9999999999999999999999999999999 99999999999998
Q ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHH---HHhhhhhHHHHHHhhHHHhhhcc
Q 014481 191 LATALLPLLAG-FMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSF---VFGGLSFGSVAGLLLAPPIIENL 266 (423)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~ 266 (423)
++.+++. ..+ +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ++.+.++|..+||.+++.+.+..
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 97 VGHAFLA-IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHH-HTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHH-HhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8887774 555 778999999999999999999999999999999999876666 99999999999999999999988
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 014481 267 GWESVFYIFGLLGIAWFSGFKI 288 (423)
Q Consensus 267 gw~~~~~~~~~~~~~~~~~~~~ 288 (423)
||++.|++.+++.++.++..++
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=7.8e-16 Score=147.38 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHh--cCchHHHHHHHHHH-H
Q 014481 116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIF--GGRKVLQTGVLIWS-L 191 (423)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~~~~~~~~~~-~ 191 (423)
+..+.+..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |+|+.+.++.++.. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 333 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3344455555555666666777776655 899999999999999999999999999999999 99999988877766 5
Q ss_pred HHHHHHHhh-hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhh-HHHHHHhhHHHhhhccCch
Q 014481 192 ATALLPLLA-GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSF-GSVAGLLLAPPIIENLGWE 269 (423)
Q Consensus 192 ~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~ 269 (423)
+.+++.... .+.+.++++.++.|++.+...+....++.+.+|+++|++++|+.+....+ |..++|.+.+.+.+..||+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~ 413 (451)
T 1pw4_A 334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 413 (451)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 554443222 35677778888999998888888899999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 014481 270 SVFYIFGLLGIAWFSGFKILQ 290 (423)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ 290 (423)
..|++.+++.++..+..+++.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 414 GGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877766655554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=7e-14 Score=132.55 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=115.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccchHhHHHH
Q 014481 148 SSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLLAGFMPGLVLSRVLVGIGEGVSPSAATDL 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 227 (423)
....++..++..++..++.++.|+++||+|||+++.++.++.++..++.. ..++.+.+++..++.+++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888899999999999999999999988888777665553 34455667777777787776666777889
Q ss_pred HHhcCCCCchhhHHHH-HHhhhhhHHHHHHhhHHHhhhccCchHHHHHHHHHHHHHHHHHHhh
Q 014481 228 IARSIPLEERSRAVSF-VFGGLSFGSVAGLLLAPPIIENLGWESVFYIFGLLGIAWFSGFKIL 289 (423)
Q Consensus 228 i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~ 289 (423)
++|.+|++.|+++.++ ++....+|..++|.++|.+.+..|++..|.+.+++.++..+..++.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 5888899999999999999998889999998888877766554443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=1.7e-13 Score=130.63 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=125.2
Q ss_pred HHHHHHhhhhhhhhhHHHh-hhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHHHHHHHh
Q 014481 122 AFVICNMDKVNLSVAIIPM-SHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLATALLPLL 199 (423)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 199 (423)
..++............|.+ .++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+.++.++.+++.++.. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~ 344 (438)
T 3o7q_A 266 AQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-F 344 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-H
Confidence 3333344444555555555 544 599999999999999999999999999999999999999999888877776663 4
Q ss_pred hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccC-chHHHHHHHHH
Q 014481 200 AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLG-WESVFYIFGLL 278 (423)
Q Consensus 200 ~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~~~~~~~~ 278 (423)
.++.+.+ ++.++.|++.+...+...++..+.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.++.
T Consensus 345 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 345 AGGHVGL-IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp CCHHHHH-HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred cCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4443443 3448889999999999999999999855 888888877 567999999999999999988 99999876655
Q ss_pred HHHHHH
Q 014481 279 GIAWFS 284 (423)
Q Consensus 279 ~~~~~~ 284 (423)
.++.++
T Consensus 422 ~~~~~~ 427 (438)
T 3o7q_A 422 FAVIFI 427 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=2.5e-12 Score=124.42 Aligned_cols=165 Identities=19% Similarity=0.075 Sum_probs=124.6
Q ss_pred HHHhhhhhhhhhHHHh-hhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHH-----HHHHHHHHHHHHHHH
Q 014481 125 ICNMDKVNLSVAIIPM-SHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQ-----TGVLIWSLATALLPL 198 (423)
Q Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~ 198 (423)
............++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+... ++.++.+++.++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 294 LFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp HHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455554 4446777678889999999999999999999999999987655 666666666555433
Q ss_pred hh--------hHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481 199 LA--------GFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (423)
Q Consensus 199 ~~--------~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~ 270 (423)
.. .+.+.++++.++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+. ++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~ 452 (491)
T 4aps_A 374 PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVA 452 (491)
T ss_dssp HHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTH
T ss_pred HHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHH
Confidence 21 24566777888999999998899999999999999999999999999999999999999988765 6777
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 014481 271 VFYIFGLLGIAWFSGFKILQ 290 (423)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ 290 (423)
.|++.+++.++..+..+++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 453 YFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888877776655555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.35 E-value=3.7e-11 Score=116.19 Aligned_cols=181 Identities=11% Similarity=0.017 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHHHHHHH
Q 014481 114 KLIGTTSLAFVICNMDKVNLSVAIIPMSHRFGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLIWSLAT 193 (423)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 193 (423)
+.........+...........+.+.+.+..+.+............+...++.++.+++.||+|||+.++.+..+.+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHH
Confidence 33444444445555555666667778888888888888888888889999999999999999999999999888877766
Q ss_pred HHHHHhh----hHHHHHH-HHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhh----
Q 014481 194 ALLPLLA----GFMPGLV-LSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIE---- 264 (423)
Q Consensus 194 ~~~~~~~----~~~~~~~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---- 264 (423)
+.++... .....++ +..+..+++ ....+....+.+|.+|.+.|++++|+......+|..+++.+.+.+.+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 357 FSLGTAFYTQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543221 1111122 222222333 23446778899999999999999999999999999999888766543
Q ss_pred --ccCchHHHHHHHHHHHHHHH-HHHhhccCCcC
Q 014481 265 --NLGWESVFYIFGLLGIAWFS-GFKILQEGETS 295 (423)
Q Consensus 265 --~~gw~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 295 (423)
..++.+.|++.++++++..+ ..+++||++.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 34567788888888777654 45677877654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.15 E-value=3.5e-11 Score=112.13 Aligned_cols=158 Identities=13% Similarity=-0.028 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhhhh-hCCCcchhhHHHHHHHHHHHhhhhhhhhHhhHhcCchHHHHHHHH-HHHHH
Q 014481 116 IGTTSLAFVICNMDKVNLSVAIIPMSHR-FGWNSSVAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLQTGVLI-WSLAT 193 (423)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~ 193 (423)
+....+..++............|.+.++ +|.++.+.+++.+...++..++.++.+++.||+|++ +..+..+ ...+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~ 278 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL 278 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3344444555555556666667765444 899999999999999999999999999999999883 2333222 22222
Q ss_pred H--HHHHh-hhHHHHHHHHHHHHHhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhccCchH
Q 014481 194 A--LLPLL-AGFMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENLGWES 270 (423)
Q Consensus 194 ~--~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~ 270 (423)
. ..... .++.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+....+|..++|.+.+.+.+..+|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 279 LMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 1 11111 2355667778889999999889999999999998 899999999999999999999999999988777877
Q ss_pred HHHHHH
Q 014481 271 VFYIFG 276 (423)
Q Consensus 271 ~~~~~~ 276 (423)
.+++.+
T Consensus 358 ~~~~~~ 363 (375)
T 2gfp_A 358 GLLMTL 363 (375)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.88 E-value=2.7e-09 Score=104.01 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhHh----hHhcC----chHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHH
Q 014481 150 VAGLVQSSFFWGYALSQLPGGWLA----KIFGG----RKVLQTGVLIWSLATALLPLLA--------GFMPGLVLSRVLV 213 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~ 213 (423)
..+++.....++..++.++.+++. +|.|+ ++.+.++.++.+++.++..... .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666666777777777764 55543 2456667777766665553321 2456677788999
Q ss_pred HhhcccchHhHHHHHHhcCCCCchhhHHHHHHhhhhhHHHHHHhhHHHhhhcc--Cc---------hHHHHHHHHHHHHH
Q 014481 214 GIGEGVSPSAATDLIARSIPLEERSRAVSFVFGGLSFGSVAGLLLAPPIIENL--GW---------ESVFYIFGLLGIAW 282 (423)
Q Consensus 214 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw---------~~~~~~~~~~~~~~ 282 (423)
|++.+...+....++.+..|+++|++++|+++....+|..+||.+.+.+.+.. +| +..|++.+++.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988742 23 33366666666665
Q ss_pred HHHHHhh
Q 014481 283 FSGFKIL 289 (423)
Q Consensus 283 ~~~~~~~ 289 (423)
.+..+++
T Consensus 496 ~~~~~~~ 502 (524)
T 2xut_A 496 AIVFALY 502 (524)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 5544443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=61.05 E-value=4 Score=19.64 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=11.4
Q ss_pred hhhhHhhHhcCchH
Q 014481 168 PGGWLAKIFGGRKV 181 (423)
Q Consensus 168 ~~g~l~dr~G~r~~ 181 (423)
++|.++.+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999853
No 16
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=29.33 E-value=3.6e+02 Score=25.23 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=17.4
Q ss_pred hcCCCCchhhHHHHHHhhhhhHHHHHHhhH
Q 014481 230 RSIPLEERSRAVSFVFGGLSFGSVAGLLLA 259 (423)
Q Consensus 230 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 259 (423)
+...-++---+.++...+..+|.++..+.+
T Consensus 335 ~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 335 SRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp HHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 334444545566776666666666655544
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=28.35 E-value=2.7e+02 Score=26.07 Aligned_cols=51 Identities=10% Similarity=-0.036 Sum_probs=25.7
Q ss_pred CCCCch-hhHHHHHHhhhhhHHHHHHh-hHHHhhhccCchHHHHHHHHHHHHH
Q 014481 232 IPLEER-SRAVSFVFGGLSFGSVAGLL-LAPPIIENLGWESVFYIFGLLGIAW 282 (423)
Q Consensus 232 ~~~~~r-~~~~~~~~~~~~~g~~~g~~-~~~~l~~~~gw~~~~~~~~~~~~~~ 282 (423)
.|+++| .....++....+....++.. +++.+....++.+.++...+-.++.
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~ 72 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIA 72 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 455566 45555555555554444444 3333333456666665544444433
Done!