Your job contains 1 sequence.
>014482
MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP
TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF
GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK
CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG
KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR
GLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCIL
VTFEKEQIVVWRGKDYKHPGDDGQFFTHRELFDDPENDSACGVEEEVMGDSSSQQDFCSG
DDE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014482
(423 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 1374 1.9e-140 1
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 867 9.9e-87 1
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 767 3.9e-76 1
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 732 2.0e-72 1
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 152 2.5e-11 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 140 7.3e-10 2
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 124 4.4e-09 2
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 127 5.0e-05 1
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 101 0.00052 2
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
Identities = 253/329 (76%), Positives = 287/329 (87%)
Query: 75 QYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA 134
QYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPFGP RL+REWTGVCA
Sbjct: 66 QYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA 125
Query: 135 PAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
PA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE C RN+TKRQ+NLGR
Sbjct: 126 PAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGR 184
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG+++ +H GTLVLYR
Sbjct: 185 DGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYR 244
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+GLAVP LTKLAKNG
Sbjct: 245 GRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNG 304
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
YYGSLVPMVRDAFLVSELVRIDC GLER DYKKIG KLRDLVPCILVTF+KEQ+V+WRGK
Sbjct: 305 YYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGK 364
Query: 375 DYKHPGDDGQF--FTHRELFDDPENDSAC 401
DYK P +D ++ F HRE D + D +C
Sbjct: 365 DYKPPKEDDEYSSFIHRESSIDSDVDLSC 393
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 161/286 (56%), Positives = 210/286 (73%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGA 148
+DLPFDFRYSY+ETN + PIG REPK +SPFGPGRL+R+WTG A A P++ ++
Sbjct: 75 SDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTA-LASPEIDQSQW-- 131
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
+EE R R+ GE LT E L+E+ + RQINLG+ G+THNM++DIHNH
Sbjct: 132 ----VEE-----RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNH 182
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
WK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++R+ LVLYRGRNY+PK RP+IPL
Sbjct: 183 WKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPL 242
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+PH P+YP+L+K +GL EETKEMR RGL P L KL +NG Y ++V VR+ F
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 329 VSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
E+VR+DC + SD K+IG KL+++VPC+ + F+ EQI++WRGK
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 158/332 (47%), Positives = 213/332 (64%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F+YSYTET + V+P+ LREP Y+PFGP + R WTG P
Sbjct: 150 PFEFKYSYTETPK-VKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPP 208
Query: 136 AADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
+K ++ G P + + + +E I GEPLT E + LV C + T RQ+N+GR
Sbjct: 209 VGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLK--TTRQLNMGR 266
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLN+IH+ WK +IKC GV TVDM NVC QLE+K GK+I+R GG L L+R
Sbjct: 267 DGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFR 326
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LI+ EGL+ +E MR++G + + KL KNG
Sbjct: 327 GRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNG 386
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
Y LV V++AF V ELVRIDCQG++ SD++KIG KL+DLVPC+LV+FE EQI++WRG+
Sbjct: 387 VYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGR 446
Query: 375 DYKHPGDDGQFFTHRELFDDPENDSACGVEEE 406
++K ++ +D E D+A ++E
Sbjct: 447 EWKSSLTTPD--KKGDILEDIEVDTALPEDDE 476
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 152/303 (50%), Positives = 200/303 (66%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA--------PAAD-----P 139
PF+F++SY+ET + V+P+G+REP + PF P + R WTG P D P
Sbjct: 110 PFEFQFSYSETPK-VKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 168
Query: 140 KVKSAEEGAEDPN-LE----EKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
KS + E P L K + RE + GEPL E+ L+ K H + RQ+NLGR
Sbjct: 169 AGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLI-KPHMH-DNRQVNLGR 226
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DG THNML IH+HWK +++C GVPTVDM NVC LE+KT G+II R GG + L+R
Sbjct: 227 DGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFR 286
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYPKLI+ EGL+ EE E R +G ++ + KL+KNG
Sbjct: 287 GRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNG 346
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
Y SLV VRDAF +S LV++DC GLE SDYKKIG KL++LVPC+L++F+ EQI++WRG+
Sbjct: 347 VYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGR 406
Query: 375 DYK 377
++K
Sbjct: 407 EWK 409
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 152 (58.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
R +++ +G+ G+T ++N IH W+ E V+I C + ++MK LE KT G +I+
Sbjct: 180 RLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIW 239
Query: 245 RHGGTLVLYRGRNY 258
R G ++LYRG NY
Sbjct: 240 RSGSKILLYRGVNY 253
Score = 84 (34.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 29/105 (27%), Positives = 46/105 (43%)
Query: 279 PKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ 338
P+L EG++ +E +RK GL + L + G + + + + ELV+I C
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 628
Query: 339 GLERSDYKKIGCKLRDLVPCILVTFEKEQ----IVVWRGKDYKHP 379
K+ L ILV E I+V+RGK+Y+ P
Sbjct: 629 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERP 673
Score = 72 (30.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 22/89 (24%), Positives = 47/89 (52%)
Query: 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKK 347
L+ +E +R+ G +P L +N L + + EL +I + G++ ++ +
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 348 IGCKLRDLVPCILVTFEKEQIVVWRGKDY 376
+ +L+ L L++ +K+ IV++RGKD+
Sbjct: 438 MAEELKWLTGGTLISRDKDFIVLYRGKDF 466
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/91 (19%), Positives = 43/91 (47%)
Query: 286 IEGLSIEETKEMRKRGLAVPVLTKLA--KNGYYGSLVPMVRDAFLVSELVRIDCQGLER- 342
+ LS E +RK+ L + A ++ L ++ F + L ++ +G
Sbjct: 872 VTDLSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANG 931
Query: 343 SDYKKIGCKLRDLVPCILVTFEKEQIVVWRG 373
+ +++ KL++ +LV+ E +++++RG
Sbjct: 932 TSVQEVIAKLKEETGALLVSQEPSKVILYRG 962
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 140 (54.3 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 45/147 (30%), Positives = 73/147 (49%)
Query: 139 PKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKR-------QIN 191
P K+ EE A + + E + V ++ + + AE VE R +R +IN
Sbjct: 206 PWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAE--LTVEDSELRRLRRDGMYLRVRIN 263
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLV 251
+ + GLT ++ I++ W+ E VR+K V DMK +E +T G +I+R G +V
Sbjct: 264 IPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGSVMV 323
Query: 252 LYRGRNYNPKKRPVIPLMLWRPHEPVY 278
+YRG +Y K PVI + P E ++
Sbjct: 324 VYRGLDY--KGPPVISNQMAGPKETLF 348
Score = 81 (33.6 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 24/99 (24%), Positives = 50/99 (50%)
Query: 280 KLIKTTIEG-LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ 338
+L+ T + L+ E +RK G +P L +N + L + + S + +I +
Sbjct: 432 RLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVK 491
Query: 339 -GLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDY 376
G++ ++ K + +++ L +L+ K IV++RGKD+
Sbjct: 492 RGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDF 530
Score = 58 (25.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYK 346
E +S EE RK GL + + G + ++ + + ELV++ + ++ +
Sbjct: 651 EVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVE 710
Query: 347 KIGCKLRDLVPCILVTFEKEQ----IVVWRGKDYKHP 379
+ L +LV EK ++ +RGK+Y+ P
Sbjct: 711 ETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRP 747
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 124 (48.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 169 LTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMK 228
L +E + L R +K +I G G+T ++ I WK AE VR+K G ++M+
Sbjct: 221 LPESELRRLRNLTFRTASKMRIRGG--GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMR 278
Query: 229 NVCFQLEDKTFGKIIFRHGGTLVLYRGRNY 258
+ LE KT G +I+R G ++ LYRG +Y
Sbjct: 279 KMHEILEKKTGGLVIWRSGTSISLYRGVSY 308
Score = 91 (37.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYK 346
E ++ EE RK GL + L + G + V + + ELV+I + K
Sbjct: 636 ESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVK 695
Query: 347 KIGCKLRDLVPCILVTFEKEQ----IVVWRGKDYKHP 379
K+ L ILV+ +K I+V+RG+DYK P
Sbjct: 696 KVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRP 732
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 127 (49.8 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/122 (24%), Positives = 64/122 (52%)
Query: 185 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIF 244
+ K + +G G+ ++ ++H HWK E V++ C P +K + + + G +I
Sbjct: 106 KNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVIN 165
Query: 245 RHG-GTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEG--LSIEETKE-MRKR 300
H T++++RGRNY K +IP+ + ++ + +E L+I++T++ +R+
Sbjct: 166 IHNVKTIIMFRGRNYRQPKN-LIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRM 224
Query: 301 GL 302
G+
Sbjct: 225 GV 226
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 101 (40.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 37/127 (29%), Positives = 67/127 (52%)
Query: 138 DPKVKSAEE-GAEDP-NLEEKRILVRERIQGEPL-TNAER---KALVEKCHRNRTKRQ-- 189
+ KV+S + G + P EE+R ++R R++ E + T AE + L+ + R +K +
Sbjct: 167 EEKVESKDRFGGKMPWEREEERFILR-RMKKESVPTTAELILDEGLLNRLRREASKMRKW 225
Query: 190 INLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTV-DMKNVCFQLEDKTFGKIIFRHGG 248
+N+ + G+T ++N I + WK E ++ VP +M+ +E KT G ++
Sbjct: 226 VNVRKAGVTELVVNKIKSMWKLNELAMVR-FDVPLCRNMERAQEIIEMKTGGLVVLSKKE 284
Query: 249 TLVLYRG 255
LV+YRG
Sbjct: 285 FLVVYRG 291
Score = 64 (27.6 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 30/114 (26%), Positives = 52/114 (45%)
Query: 270 LWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLV 329
LW+P E IE L+ EE + +R+ GL + L + G + ++ + +
Sbjct: 559 LWKPSEG------DDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKH 612
Query: 330 SELVR-IDCQGL-ERSDY--KKIGCKLRDLVPCILVTFEKEQIVVWRGKDYKHP 379
E+ + I Q L R Y K + + ++ I E I+++RGK+YK P
Sbjct: 613 REVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 666
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 423 377 0.00089 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 614 (65 KB)
Total size of DFA: 269 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.23u 0.11s 31.34t Elapsed: 00:00:02
Total cpu time: 31.23u 0.11s 31.34t Elapsed: 00:00:02
Start: Sat May 11 00:27:12 2013 End: Sat May 11 00:27:14 2013