BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014482
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 544 bits (1401), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/404 (70%), Positives = 324/404 (80%), Gaps = 12/404 (2%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKPENPNP 60
M R SR PS FTLLT L + T +SS+L D Y+F+ PP LS NP
Sbjct: 1 MFLIRLSRHNPS----SFTLLTRRLH----DQTISSSRLRDLYNFQSPPPLSSSASE-NP 51
Query: 61 TLNPNKNFKKKSKPQYRPPSSLDAPKKKYTDLPFDFRYSYTETNQNVRPIGLREPKYSPF 120
N N KKK KPQYRPPSSL+ K ++DLPFDFR+SYTE+ NVRPIGLREPKYSPF
Sbjct: 52 DFNQKNNNKKKPKPQYRPPSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPF 111
Query: 121 GPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEK 180
GP RL+REWTGVCAPA +PKV+S + G EDP LEEKR VRE+IQG LT AERK LVE
Sbjct: 112 GPDRLDREWTGVCAPAVNPKVESVD-GVEDPKLEEKRRKVREKIQGASLTEAERKFLVEL 170
Query: 181 CHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFG 240
C RN+TKRQ+NLGRDGLTHNMLND++NHWKHAEAVR+KCLGVPT+DMKNV F LEDKTFG
Sbjct: 171 CQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFG 230
Query: 241 KIIFRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKR 300
+++ +H GTLVLYRGRNY+PKKRP IPLMLW+PHEPVYP+LIKTTI+GLSI+ETK MRK+
Sbjct: 231 QVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKK 290
Query: 301 GLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCIL 360
GLAVP LTKLAKNGYYGSLVPMVRDAFLVSELVRIDC GLER DYKKIG KLRDLVPCIL
Sbjct: 291 GLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCIL 350
Query: 361 VTFEKEQIVVWRGKDYKHPGDDGQF--FTHRELFDDPENDSACG 402
VTF+KEQ+V+WRGKDYK P +D ++ F HRE D + D +C
Sbjct: 351 VTFDKEQVVIWRGKDYKPPKEDDEYSSFIHRESSIDSDVDLSCS 394
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/346 (67%), Positives = 272/346 (78%), Gaps = 10/346 (2%)
Query: 37 SKLYDHYSFKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKK--KYTDLPF 94
S L D Y F PP SL+P + + + ++ KP YRPPSSLD + +DLPF
Sbjct: 23 SGLLDRYGFVPPASLTPH----SASDDGGAKKRRPKKPPYRPPSSLDRGGRPAARSDLPF 78
Query: 95 DFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGAEDPNLE 154
DFR+SYTE++ +PIGLREPKYSPFGPGRL+R WTG+CAPA D ++ A P E
Sbjct: 79 DFRFSYTESSPGDKPIGLREPKYSPFGPGRLDRPWTGLCAPAVDTTLRDAHADDPAPAAE 138
Query: 155 EKRILVRER----IQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWK 210
+ R R + GEPLT AER LV KC ++RTK+QINLGRDGLTHNMLNDIHNHWK
Sbjct: 139 RELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWK 198
Query: 211 HAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPLML 270
+ EAVR+KCLGVPTVDM+NVC QLEDKT G II RHGG L+LYRGR+YNPKKRPVIPLML
Sbjct: 199 NDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLML 258
Query: 271 WRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS 330
W+P EPVYP+LIKTTIEGL++EETKEMRK+GL VPVLTKLAKNGYY SLVPMVRDAFL
Sbjct: 259 WKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTD 318
Query: 331 ELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGKDY 376
ELVRID +GL +SDY+KIG KLRDLVPCI+V+F+KEQI+VWRGKDY
Sbjct: 319 ELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKDY 364
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 338 bits (867), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 160/286 (55%), Positives = 208/286 (72%), Gaps = 13/286 (4%)
Query: 90 TDLPFDFRYSYTETNQNVRPIGLREPK-YSPFGPGRLEREWTGVCAPAADPKVKSAEEGA 148
+DLPFDFRYSY+ETN + PIG REPK +SPFGPGRL+R+WTG A A P++ ++
Sbjct: 75 SDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTA-LASPEIDQSQWVE 133
Query: 149 EDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNH 208
E R R+ GE LT E L+E+ + RQINLG+ G+THNM++DIHNH
Sbjct: 134 E-----------RARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNH 182
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKRPVIPL 268
WK AEAVRIKCLGVPT+DM N+CF LE+K+ GKI++R+ LVLYRGRNY+PK RP+IPL
Sbjct: 183 WKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPL 242
Query: 269 MLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFL 328
MLW+PH P+YP+L+K +GL EETKEMR RGL P L KL +NG Y ++V VR+ F
Sbjct: 243 MLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFE 302
Query: 329 VSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
E+VR+DC + SD K+IG KL+++VPC+ + F+ EQI++WRGK
Sbjct: 303 TEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 161/291 (55%), Positives = 206/291 (70%), Gaps = 13/291 (4%)
Query: 85 PKKKYTDLPFDFRYSYTETNQNVRPIGLREP-KYSPFGPGRLEREWTGVCAPAADPKVKS 143
P+ +DLPFDFRYSY+ET+ RPIG REP ++SPFGPGRL+R W GV A AA +
Sbjct: 72 PEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAG 131
Query: 144 AEEGAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLN 203
A + RE + GEPL E LVE+ + RQINLG+ G+THNM++
Sbjct: 132 AAATS------------REEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMID 179
Query: 204 DIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYRGRNYNPKKR 263
DIHNHWK AEAVRIKCLGVPT+DM N+CF LEDKT GK+I+R+ L+LYRGRNY+PK+R
Sbjct: 180 DIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQR 239
Query: 264 PVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMV 323
P IPLMLW+P P+YP+L++ +GL+ E+TKE+R GL L KL +NG Y ++V V
Sbjct: 240 PQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRV 299
Query: 324 RDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
R+AF E+VR+DC + SD KKIG KLRDLVPC+ + F+ EQI++WRGK
Sbjct: 300 REAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGK 350
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 306 bits (783), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 215/336 (63%), Gaps = 31/336 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F+YSYTET + V+P+ LREP Y+PFGP + R WTG P
Sbjct: 150 PFEFKYSYTETPK-VKPLKLREPAYAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPP 208
Query: 136 AADPKVKSAEE-GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLGR 194
+K ++ G P + + + +E I GEPLT E + LV C + T RQ+N+GR
Sbjct: 209 VGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLK--TTRQLNMGR 266
Query: 195 DGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLYR 254
DGLTHNMLN+IH+ WK +IKC GV TVDM NVC QLE+K GK+I+R GG L L+R
Sbjct: 267 DGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFR 326
Query: 255 GRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNG 314
GRNYN + RP PLMLW+P PVYP+LI+ EGL+ +E MR++G + + KL KNG
Sbjct: 327 GRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNG 386
Query: 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRGK 374
Y LV V++AF V ELVRIDCQG++ SD++KIG KL+DLVPC+LV+FE EQI++WRG+
Sbjct: 387 VYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGR 446
Query: 375 DYKH----PGDDGQFFTHRELFDDPENDSACGVEEE 406
++K P G ++ +D E D+A ++E
Sbjct: 447 EWKSSLTTPDKKG------DILEDIEVDTALPEDDE 476
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 288 bits (738), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 203/314 (64%), Gaps = 33/314 (10%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDFR+SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 127 PFDFRFSYSECPR-APPVAIREPAFLPFAPPTMPRPWTGK-APLLTKEEKARRRGVRLHT 184
Query: 149 ----EDP----------------NLEEKRIL-----VRERIQGEPLTNAERKALVEKCHR 183
E P L+ R+ RE + GEPLT AE + LV K H
Sbjct: 185 PLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLV-KPHI 243
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 244 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 302
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGRNYNP+ RP PLMLW+P PVYPKLI+ EGL+ EE EMR+RG
Sbjct: 303 HRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKD 362
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTF 363
+ + KLAKNG Y LV VRDAF S+LV+IDC+GL SDYKKIG KLRDLVPC+L++F
Sbjct: 363 LLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSF 422
Query: 364 EKEQIVVWRGKDYK 377
+ EQI+++RGK++K
Sbjct: 423 DNEQILMFRGKEWK 436
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 288 bits (736), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 193/307 (62%), Gaps = 28/307 (9%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG-----------------VCAP 135
PF+F+YSYTET + RP+ LRE + PFGP R WTG + P
Sbjct: 91 PFEFQYSYTETPR-ARPVALREAPFLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLPP 149
Query: 136 AADPKVKSAEE-----GAEDPNLEEKRILVRERIQGEPLTNAERKALVEKCHRNRTKRQI 190
VK + +P + RE + GEPLT E LV+ +TKRQ+
Sbjct: 150 PGKKGVKPVQSPGPFLAGTEPRYQAAS---REEVLGEPLTKEEVDELVKATL--KTKRQL 204
Query: 191 NLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
N+GRDGLTHNML +IH+HWK +IKC GV TVDM NVC QLE+K GK+I GG +
Sbjct: 205 NIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVI 264
Query: 251 VLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKL 310
L+RGRNYN + RP+ PLMLW+P PVYP+L+K +GL+ +E ++MRKRG +P + KL
Sbjct: 265 FLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKL 324
Query: 311 AKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVV 370
KNG Y +LV VR+AF +LVR+DC GL +SD +KIG KL+DLVPC L++FE E I++
Sbjct: 325 GKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILM 384
Query: 371 WRGKDYK 377
WRG D+K
Sbjct: 385 WRGNDWK 391
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/304 (49%), Positives = 197/304 (64%), Gaps = 23/304 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCA-----------------P 135
PF+F++SY+ET + V+P+G+REP + PF P + R WTG P
Sbjct: 110 PFEFQFSYSETPK-VKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPP 168
Query: 136 AADPKVKSAEEGAEDP-NLEEKRILVRERIQGEPLTNAERKALVE-KCHRNRTKRQINLG 193
A VK E P K + RE + GEPL E+ L++ H NR Q+NLG
Sbjct: 169 AGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNR---QVNLG 225
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDG THNML IH+HWK +++C GVPTVDM NVC LE+KT G+II R GG + L+
Sbjct: 226 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLF 285
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYPKLI+ EGL+ EE E R +G ++ + KL+KN
Sbjct: 286 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKN 345
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRG 373
G Y SLV VRDAF +S LV++DC GLE SDYKKIG KL++LVPC+L++F+ EQI++WRG
Sbjct: 346 GVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRG 405
Query: 374 KDYK 377
+++K
Sbjct: 406 REWK 409
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 204/314 (64%), Gaps = 33/314 (10%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTGVCAPAADPKVKSAEEGA---- 148
PFDF++SY+E + P+ +REP + PF P + R WTG AP + K+ G
Sbjct: 131 PFDFQFSYSEAPR-APPLAIREPAFLPFAPPTMPRPWTG-KAPLLTKEEKARRRGVRLHT 188
Query: 149 ----EDPN----------LEEKRIL-----------VRERIQGEPLTNAERKALVEKCHR 183
E P + E+R + RE + GEPLT +E +ALV K H
Sbjct: 189 PLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPLTPSEVRALV-KPHI 247
Query: 184 NRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII 243
+ RQ+N+GRDGLTHNML IH HW+ E +++C GVPTVDMKN+C+ LE+K+ GK+I
Sbjct: 248 SHN-RQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVI 306
Query: 244 FRHGGTLVLYRGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLA 303
R GG + LYRGR+Y+PK RP PLMLW+P PVYPKLIK +G + EE EMR++G
Sbjct: 307 HRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGFTKEEADEMRRKGRD 366
Query: 304 VPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTF 363
+ + KLAKNG Y +LV VRDAF S+LV+IDC+GL SDYKKIG KLRDLVPC+L++F
Sbjct: 367 LLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSF 426
Query: 364 EKEQIVVWRGKDYK 377
+ EQI++ RGK++K
Sbjct: 427 DDEQILMHRGKEWK 440
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/304 (49%), Positives = 193/304 (63%), Gaps = 22/304 (7%)
Query: 93 PFDFRYSYTETNQNVRPIGLREPKYSPFGPGRLEREWTG----------------VCAPA 136
PF+F+YSYTE + RP+ LRE + PFGP R WTG PA
Sbjct: 91 PFEFQYSYTEAPR-ARPVALREAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPA 149
Query: 137 ADPK-VKSAEE-GAEDPNLEEK-RILVRERIQGEPLTNAERKALVEKCHRNRTKRQINLG 193
K VK + G +E + + + RE I GEPLT E LV+ + +KRQ+N+G
Sbjct: 150 PGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLK--SKRQLNMG 207
Query: 194 RDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHGGTLVLY 253
RDGLTHNML +IH+HWK +IKC GV T+DM N+C QLE+K GK+I R GG + L+
Sbjct: 208 RDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLF 267
Query: 254 RGRNYNPKKRPVIPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKN 313
RGRNYN + RP PLMLW+P PVYP+L+ GL+ +E EMR RG +P + KL KN
Sbjct: 268 RGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKN 327
Query: 314 GYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQIVVWRG 373
G Y +LV VR+AF +LVR+DC GL +SD +KIG KL+DLVPCIL++FE E I++WRG
Sbjct: 328 GVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRG 387
Query: 374 KDYK 377
D+K
Sbjct: 388 SDWK 391
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 189 QINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKII----F 244
+ LGR G+ ++ +IH HWKH E V++ + LE +T G +I F
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 245 RHGGTLVLYRGRNY 258
++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 288 GLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYK 346
L+ EE +RK +P L +N L + + S + ++ + G++ ++++
Sbjct: 353 ALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHE 412
Query: 347 KIGCKLRDLVPCILVTFEKEQIVVWRGKDYKHPGDDGQFFTHRE 390
++ L+ L ++ K+ I+++RGKD+ PG + RE
Sbjct: 413 QMARNLKRLTGGTVILRNKDYIIIYRGKDFL-PGGVAESVIERE 455
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 154 EEKRILVRERIQGEPLTNAERKALVEKCHRNR-----TKRQINLGRDGLTHNMLNDIHNH 208
EE ++++R + T AE + + R R +R + G+T ++ ++
Sbjct: 133 EETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQ 192
Query: 209 WKHAEAVRIKCLGVPTVDMKNVCFQ-----LEDKTFGKIIFRHGGTLVLYRGRNY 258
W + + GV V+ C LE KT G +++ GG +YRG +Y
Sbjct: 193 WAKGQ----ELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 167 EPLTNAERKALVEKCHRN---RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVP 223
E LTN ER+ C R + + LGR G+ ++ +H HWKH E ++ +
Sbjct: 570 EILTNEERE-----CLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKL 624
Query: 224 TVDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNYNPKKRPVIPLM 269
+ LE ++ G +I + G +++YRG+NY KRP LM
Sbjct: 625 FSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 671
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 48/268 (17%)
Query: 154 EEKRILVRERIQGEPL-TNAER---KALVEKCHR--NRTKRQINLGRDGLTHNMLNDIHN 207
EE+R ++R R++ E + T AE + L+ + R ++ ++ +N+ + G+T ++N I +
Sbjct: 185 EEERFILR-RMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKS 243
Query: 208 HWKHAEAVRIKCLGVPTV-DMKNVCFQLEDKTFGKIIFRHGGTLVLYRGR-NYNPKKRPV 265
WK E ++ VP +M+ +E KT G ++ LV+YRG +Y+ + +
Sbjct: 244 MWKLNELAMVR-FDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEGQDE 302
Query: 266 IPLMLW---------------------RPHEPVYPKLIKTTIEG---------------L 289
I L+ RP PV L+ + G L
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPF-PVDADLLPEVVNGYMTPSRRCPPNTRAKL 361
Query: 290 SIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKKI 348
+ EE +R +P L +N L + + + +I + G ++ +++
Sbjct: 362 TDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEM 421
Query: 349 GCKLRDLVPCILVTFEKEQIVVWRGKDY 376
+LR L +L+ K IV++RGKD+
Sbjct: 422 ADELRYLTGGVLILRNKYLIVLYRGKDF 449
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 171 NAERKALVE--KCHRNRTKRQIN----LGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPT 224
+A+R+ L E K R R+++ LGR G+ ++ +IH HWKH E V++ T
Sbjct: 558 SADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQT 617
Query: 225 VDMKNVCFQLEDKTFGKII----FRHGGTLVLYRGRNY 258
+ LE +T G +I ++LYRG+NY
Sbjct: 618 RQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 289 LSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQ-GLERSDYKK 347
L+ EE +RK +P L +N L + + S + +I + G++ ++ ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 348 IGCKLRDLVPCILVTFEKEQIVVWRGKDYKHPGDDGQFFTHRE 390
+ L+ L ++ K+ I+++RGKD+ PG Q RE
Sbjct: 412 MAWNLKHLTGGTVILRNKDFIILYRGKDFL-PGGVAQTVIQRE 453
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 192 LGRDGLTHNMLNDIHNHWKHAEAVRIKC-LGVPTVDMKNVCFQLEDKTFGKIIFRHGGTL 250
LGR+ + I W+ + +I +G+ + + + + L+ T G +I R+ +
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFI 432
Query: 251 VLYRGRNYNP 260
+LYRG+++ P
Sbjct: 433 ILYRGKDFLP 442
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 187 KRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH 246
K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++ H
Sbjct: 193 KNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH 252
Query: 247 -GGTLVLYRGRNY 258
G T+++YRG+NY
Sbjct: 253 EGNTIIMYRGKNY 265
>sp|O82261|DEGP2_ARATH Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana
GN=DEGP2 PE=1 SV=2
Length = 607
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 19 TLLTCCLSATAANTTNNSSKLYDHYSFKPPPSLSPKP-----------ENPNPTLNPNKN 67
++ CC S A+ SS + + F SL+P+ ++P+P LNP KN
Sbjct: 4 SVANCCFSVLNASVKIQSSSISSPWCFVSASSLTPRASSNIKRKSSRSDSPSPILNPEKN 63
Query: 68 FKKKSK------PQYRPPSSLDAPKKKYTDLPFDF 96
+ + + PQ + +PKK+ + DF
Sbjct: 64 YPGRVRDESSNPPQKMAFKAFGSPKKEKKESLSDF 98
>sp|B5EMD4|PNP_ACIF5 Polyribonucleotide nucleotidyltransferase OS=Acidithiobacillus
ferrooxidans (strain ATCC 53993) GN=pnp PE=3 SV=1
Length = 692
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 193 GRDGLTH------NMLNDIHNHWKHAEAVRIKCLGV 222
GRDGL H ++D+H+H K +AVR+K L V
Sbjct: 642 GRDGLLHISQISNERVSDVHDHLKEGQAVRVKVLEV 677
>sp|B7J4D8|PNP_ACIF2 Polyribonucleotide nucleotidyltransferase OS=Acidithiobacillus
ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)
GN=pnp PE=3 SV=1
Length = 690
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 193 GRDGLTH------NMLNDIHNHWKHAEAVRIKCLGV 222
GRDGL H ++D+H+H K +AVR+K L V
Sbjct: 640 GRDGLLHISQISNERVSDVHDHLKEGQAVRVKVLEV 675
>sp|P75168|PT1_MYCPN Phosphoenolpyruvate-protein phosphotransferase OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=ptsI PE=1 SV=1
Length = 572
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 270 LWRPHEPVYPKLIKTTIEGLSIEET-----KEMRKRGLAVPVLTKLAKNGYYGSLVPMVR 324
L++P P KLI TIEG + + EM LA+P+L L + S M +
Sbjct: 469 LYQPLNPALLKLIYLTIEGGKVNDIWTGMCGEMAGEPLAIPLLLGLGLKEFSMSASSMFK 528
Query: 325 DAFLVSELVRIDCQGLER 342
++++L +CQ L +
Sbjct: 529 ARMIIAKLNYTECQTLAQ 546
>sp|Q4UNI5|SCA1_RICFE Putative surface cell antigen sca1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=sca1 PE=3 SV=1
Length = 1703
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 28 TAANTTNNSSKLYDHYSFKP-PPSLSPKPENPNPTLNPNKNFKKKSKP 74
TA NT N + +HY+ P PS P P P PN N + K+ P
Sbjct: 186 TAPNTPNTTLTSPEHYTTAPGTPSTPVTPYQPTPDSKPNDNLEAKTPP 233
>sp|Q6ZQK0|CNDD3_MOUSE Condensin-2 complex subunit D3 OS=Mus musculus GN=Ncapd3 PE=1 SV=3
Length = 1506
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 MIFNRFSRQKPSLRSQPFTLLTCCLSATAANTTNNSSKLYDHYSFKP-PPSLSPKPENPN 59
+IF+R + P++RS+ + CL +++NT+ + +++ + + P +LS NP+
Sbjct: 449 IIFDRCLDKAPTVRSKALSSFAHCLELSSSNTSESILEIFINSNLVPGIQNLSNTVLNPS 508
Query: 60 PTLNPNKNFKKKSK 73
P L + +S+
Sbjct: 509 PVLTSRNGYSAQSR 522
>sp|Q8TE54|S26A7_HUMAN Anion exchange transporter OS=Homo sapiens GN=SLC26A7 PE=2 SV=2
Length = 656
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLA-KNGYYGSLVPMVR 324
+P++ W PH + L+ T+ G+ + + +GLA VL+ + G YGSL P +
Sbjct: 32 LPILDWAPHYNLKENLLPDTVSGIML--AVQQVTQGLAFAVLSSVHPVFGLYGSLFPAII 89
Query: 325 DAFL 328
A
Sbjct: 90 YAIF 93
>sp|Q5RAL2|S26A7_PONAB Anion exchange transporter OS=Pongo abelii GN=SLC26A7 PE=2 SV=1
Length = 656
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 266 IPLMLWRPHEPVYPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLA-KNGYYGSLVPMVR 324
+P++ W PH + L+ T+ G+ + + +GLA VL+ + G YGSL P +
Sbjct: 32 LPILDWAPHYNLKENLLPDTVSGIML--AVQQVTQGLAFAVLSSVHPVFGLYGSLFPAII 89
Query: 325 DAFL 328
A
Sbjct: 90 YAIF 93
>sp|O14299|WIS4_SCHPO MAP kinase kinase kinase wis4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=wis4 PE=3 SV=1
Length = 1401
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 30 ANTTNNSSKLYDHYS--FKPPPSLSPKPENPNPTLNPNKNFKKKSKPQYRPPSSLDAPKK 87
AN T NSS + HYS + PPS+ + + N + P+ + RP +S D+ +K
Sbjct: 104 ANLTRNSSFNHQHYSTTLRSPPSMRGRGIDVNSSHYPHIS---------RPRTSSDS-QK 153
Query: 88 KYTDLPFDFRY 98
YT P D+ Y
Sbjct: 154 MYTRAPVDYYY 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,163,820
Number of Sequences: 539616
Number of extensions: 8267145
Number of successful extensions: 23290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 22968
Number of HSP's gapped (non-prelim): 333
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)