Query 014482
Match_columns 423
No_of_seqs 248 out of 813
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 100.0 2.2E-29 7.6E-34 211.8 13.4 87 168-256 2-88 (98)
2 1rq8_A Conserved hypothetical 100.0 2.9E-29 9.9E-34 213.4 13.6 88 168-257 1-88 (104)
3 1rq8_A Conserved hypothetical 100.0 3.1E-29 1E-33 213.3 11.3 93 288-380 1-93 (104)
4 1jo0_A Hypothetical protein HI 100.0 9.5E-29 3.3E-33 208.0 10.2 89 288-376 2-90 (98)
5 3ka5_A Ribosome-associated pro 56.7 30 0.001 27.0 6.4 47 213-259 1-50 (65)
6 3sbx_A Putative uncharacterize 45.7 34 0.0012 31.2 6.0 50 297-352 131-187 (189)
7 3k2t_A LMO2511 protein; lister 40.3 30 0.001 26.2 3.9 47 213-259 1-50 (57)
8 3lyv_A Ribosome-associated fac 38.3 36 0.0012 26.6 4.2 47 213-259 2-51 (66)
9 3ka5_A Ribosome-associated pro 37.2 1.2E+02 0.0041 23.6 7.0 46 331-377 1-50 (65)
10 3p04_A Uncharacterized BCR; SE 35.8 1.7E+02 0.0057 23.8 8.0 56 203-259 19-77 (87)
11 1ydh_A AT5G11950; structural g 28.4 1E+02 0.0034 28.5 6.2 58 297-355 128-187 (216)
12 1t35_A Hypothetical protein YV 27.9 53 0.0018 29.6 4.2 54 297-356 120-180 (191)
13 3p04_A Uncharacterized BCR; SE 27.9 1.9E+02 0.0064 23.5 7.0 59 315-375 14-75 (87)
14 2a33_A Hypothetical protein; s 26.7 1.2E+02 0.0041 28.0 6.4 53 297-355 132-191 (215)
15 3qua_A Putative uncharacterize 26.3 78 0.0027 29.1 5.0 56 297-353 140-197 (199)
16 2h9u_A DNA/RNA-binding protein 24.9 1.6E+02 0.0054 24.5 6.2 65 187-251 6-74 (102)
17 3jsy_A Acidic ribosomal protei 24.8 27 0.00092 32.3 1.6 76 278-354 19-101 (213)
18 1nbw_B Glycerol dehydratase re 24.1 1.9E+02 0.0063 24.8 6.6 69 186-255 4-78 (117)
19 3sim_A Protein, family 18 chit 22.2 2.6E+02 0.009 25.9 7.9 68 287-354 59-143 (275)
20 3k2t_A LMO2511 protein; lister 21.6 1.2E+02 0.0043 22.8 4.5 46 332-377 2-50 (57)
21 4ici_A Putative flavoprotein; 21.0 3.1E+02 0.011 23.5 7.7 64 288-354 101-167 (171)
22 2j01_J 50S ribosomal protein L 20.6 35 0.0012 30.3 1.4 32 287-318 30-61 (173)
23 2bky_A DNA/RNA-binding protein 20.5 2.2E+02 0.0076 23.3 6.2 65 186-251 8-77 (97)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=2.2e-29 Score=211.85 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCccEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhhCCeEEEEEc
Q 014482 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (423)
Q Consensus 168 ~LT~kErk~LRk~Ah~~~LkPvV~IGK~GLT~~VV~eI~~aLk~hELVKIK~l~~~~~dmkeiae~LeekTggeVVq~IG 247 (423)
+||++|+++||++|| +|+|+|+|||+|||++|+++|++||++||||||+|++++.+|++++|++|+++|||++||+||
T Consensus 2 ~Lt~kqr~~Lr~~ah--~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG 79 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAH--HLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG 79 (98)
T ss_dssp CCCHHHHHHHHHHHT--TBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 699999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccC
Q 014482 248 GTLVLYRGR 256 (423)
Q Consensus 248 ~viVLYRg~ 256 (423)
+++||||++
T Consensus 80 ~~~vLyR~~ 88 (98)
T 1jo0_A 80 HILVLYRPS 88 (98)
T ss_dssp TEEEEECCC
T ss_pred CEEEEEccC
Confidence 999999987
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=2.9e-29 Score=213.41 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCccEEeCCCCCCHHHHHHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHHhhCCeEEEEEc
Q 014482 168 PLTNAERKALVEKCHRNRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRHG 247 (423)
Q Consensus 168 ~LT~kErk~LRk~Ah~~~LkPvV~IGK~GLT~~VV~eI~~aLk~hELVKIK~l~~~~~dmkeiae~LeekTggeVVq~IG 247 (423)
|||++|+++||++|| +|+|+|+|||+|||++|+++|+++|++||||||||++++.+|++++|++|+++|||++||+||
T Consensus 1 mLt~kqr~~LR~~ah--~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG 78 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAH--NIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG 78 (104)
T ss_dssp CCCHHHHHHHHHHTT--SSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 699999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCC
Q 014482 248 GTLVLYRGRN 257 (423)
Q Consensus 248 ~viVLYRg~n 257 (423)
+++||||++.
T Consensus 79 ~~~VLYR~~~ 88 (104)
T 1rq8_A 79 SMIVIYRESK 88 (104)
T ss_dssp TEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9999999875
No 3
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=3.1e-29 Score=213.27 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHcCCCCCceEEeccCCchhhHHHHHHHHHhcCceEEEEecCCCcccHHHHHHHHHhhcCCEEEEEeCCE
Q 014482 288 GLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQ 367 (423)
Q Consensus 288 ~LT~KQr~yLR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkrELVKI~vl~n~~~D~keia~eLaelTg~~lVq~iG~~ 367 (423)
|||+||++|||++|++|+|+|+|||+|++++++++|++||++||||||+|+++|..|.+++|++|++.|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCC
Q 014482 368 IVVWRGKDYKHPG 380 (423)
Q Consensus 368 IVLYRgk~~~p~~ 380 (423)
+||||+++.++..
T Consensus 81 ~VLYR~~~~~~~i 93 (104)
T 1rq8_A 81 IVIYRESKENKEI 93 (104)
T ss_dssp EEEEECCCSCCSC
T ss_pred EEEEeCCCCCCce
Confidence 9999999866543
No 4
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.95 E-value=9.5e-29 Score=207.99 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHcCCCCCceEEeccCCchhhHHHHHHHHHhcCceEEEEecCCCcccHHHHHHHHHhhcCCEEEEEeCCE
Q 014482 288 GLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRDLVPCILVTFEKEQ 367 (423)
Q Consensus 288 ~LT~KQr~yLR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkrELVKI~vl~n~~~D~keia~eLaelTg~~lVq~iG~~ 367 (423)
.||+||++|||++||+|+|+|+|||+|++++++++|++||++||||||+|+++|..|.+++|++|++.|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 014482 368 IVVWRGKDY 376 (423)
Q Consensus 368 IVLYRgk~~ 376 (423)
+||||+++.
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999965
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=56.70 E-value=30 Score=26.99 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=39.4
Q ss_pred CeeEEEeCCCChHhHHHHHHHHHHhhCCeEEEEE---ccEEEEeccCCCC
Q 014482 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (423)
Q Consensus 213 ELVKIK~l~~~~~dmkeiae~LeekTggeVVq~I---G~viVLYRg~nY~ 259 (423)
++|+.|-......+.++++.+|+-.-.--+|-+. |.+-|+||.++.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 5788888888888999999999988777777775 6789999988654
No 6
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=45.66 E-value=34 Score=31.19 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=36.0
Q ss_pred HHHcCCCCCceEEeccCCchhhHHHHHHHHHhcC-------ceEEEEecCCCcccHHHHHHHH
Q 014482 297 MRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS-------ELVRIDCQGLERSDYKKIGCKL 352 (423)
Q Consensus 297 LR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkr-------ELVKI~vl~n~~~D~keia~eL 352 (423)
|.+++.+-+|++-++.+|.|+.|++.++.+.+.. .++.+. +|++++.+.|
T Consensus 131 ~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~------d~~ee~~~~l 187 (189)
T 3sbx_A 131 EGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVV------DNLDDALQAC 187 (189)
T ss_dssp HHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEE------SSHHHHHHHH
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEe------CCHHHHHHHh
Confidence 4567777899999999999999999997554432 344433 5666666655
No 7
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=40.32 E-value=30 Score=26.22 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=34.3
Q ss_pred CeeEEEeCCCChHhHHHHHHHHHHhhCCeEEEEE---ccEEEEeccCCCC
Q 014482 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (423)
Q Consensus 213 ELVKIK~l~~~~~dmkeiae~LeekTggeVVq~I---G~viVLYRg~nY~ 259 (423)
++|+.|-......+.++++.+|+-.-.--+|-+. |.+-|+||.++.+
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSC
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 3566666666777889999999888777777765 7789999987654
No 8
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=38.27 E-value=36 Score=26.63 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=37.5
Q ss_pred CeeEEEeCCCChHhHHHHHHHHHHhhCCeEEEEE---ccEEEEeccCCCC
Q 014482 213 EAVRIKCLGVPTVDMKNVCFQLEDKTFGKIIFRH---GGTLVLYRGRNYN 259 (423)
Q Consensus 213 ELVKIK~l~~~~~dmkeiae~LeekTggeVVq~I---G~viVLYRg~nY~ 259 (423)
++|+.|-......+.++++.+|+-.-.--+|-+. |.+-|+||.++.+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSS
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCC
Confidence 4677777777788899999999887777777765 7789999988654
No 9
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=37.24 E-value=1.2e+02 Score=23.59 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=35.6
Q ss_pred ceEEEEecCCCcccHHHHHHHHHhhcCCEEEEE-e---CCEEEEEcCCCCC
Q 014482 331 ELVRIDCQGLERSDYKKIGCKLRDLVPCILVTF-E---KEQIVVWRGKDYK 377 (423)
Q Consensus 331 ELVKI~vl~n~~~D~keia~eLaelTg~~lVq~-i---G~~IVLYRgk~~~ 377 (423)
++||.+-....+-+.+++..++.-+ |-.+.-| + |..-|+||.++.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 4778887788899999999999765 5555554 4 6789999998764
No 10
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=35.84 E-value=1.7e+02 Score=23.81 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCeeEEEeCCCChHhHHHHHHHHHH---hhCCeEEEEEccEEEEeccCCCC
Q 014482 203 NDIHNHWKHAEAVRIKCLGVPTVDMKNVCFQLED---KTFGKIIFRHGGTLVLYRGRNYN 259 (423)
Q Consensus 203 ~eI~~aLk~hELVKIK~l~~~~~dmkeiae~Lee---kTggeVVq~IG~viVLYRg~nY~ 259 (423)
.+|-++|+....|-|.+.+.+.++.+++.+-+.= ..+|.+ +++|+.++|+=+.|.+
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i-~kI~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKM-QKIDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEE-EEEcCCEEEEECCCeE
Confidence 6899999999999999999999999999888875 557775 5667777777777654
No 11
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=28.37 E-value=1e+02 Score=28.53 Aligned_cols=58 Identities=14% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHHcCCCCCceEEeccCCchhhHHHHHHHHHhcCceEEEEecC--CCcccHHHHHHHHHhh
Q 014482 297 MRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQG--LERSDYKKIGCKLRDL 355 (423)
Q Consensus 297 LR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkrELVKI~vl~--n~~~D~keia~eLael 355 (423)
|.+++.+-.|++-+|.+|.++.+++.++.+.+. -+|+=.-+. ..-+|++++.+.|++.
T Consensus 128 ~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~-Gfi~~~~~~~~~~~d~~ee~~~~l~~~ 187 (216)
T 1ydh_A 128 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEE-GFIKPGARNIVVSAPTAKELMEKMEEY 187 (216)
T ss_dssp HHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHT-TSSCHHHHTTEEEESSHHHHHHHHHHC
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHHHC-CCCChHHcCeEEEeCCHHHHHHHHHHh
Confidence 455667889999999999999999999755533 222211100 1136789999999873
No 12
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=27.92 E-value=53 Score=29.60 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHcCCCCCceEEeccCCchhhHHHHHHHHHhcC-------ceEEEEecCCCcccHHHHHHHHHhhc
Q 014482 297 MRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVS-------ELVRIDCQGLERSDYKKIGCKLRDLV 356 (423)
Q Consensus 297 LR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkr-------ELVKI~vl~n~~~D~keia~eLaelT 356 (423)
+.+++.+-.|++-+|.+|.++.+++.++.+.+.. .++.+ .+|++++.+.|++..
T Consensus 120 ~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~------~~~~~e~~~~l~~~~ 180 (191)
T 1t35_A 120 WAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHS------SSRPDELIEQMQNYS 180 (191)
T ss_dssp TTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEE------ESSHHHHHHHHHTC-
T ss_pred HHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEE------eCCHHHHHHHHHHhc
Confidence 3455566699999999999999999997555431 23332 367899999988743
No 13
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=27.86 E-value=1.9e+02 Score=23.49 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHhcCceEEEEecCCCcccHHHHHHHHHh---hcCCEEEEEeCCEEEEEcCCC
Q 014482 315 YYGSLVPMVRDAFLVSELVRIDCQGLERSDYKKIGCKLRD---LVPCILVTFEKEQIVVWRGKD 375 (423)
Q Consensus 315 v~~~Lv~~V~eAlEkrELVKI~vl~n~~~D~keia~eLae---lTg~~lVq~iG~~IVLYRgk~ 375 (423)
-|++. ..|-++|.....|=|++.+....+.+.|.+.++- ..+|.+..+- +.|.|+=+++
T Consensus 14 sy~Da-~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~kI~-~~IFl~~P~~ 75 (87)
T 3p04_A 14 SFEDA-QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQKID-SVTFAVVPEL 75 (87)
T ss_dssp SGGGH-HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE-TTEEEEECCC
T ss_pred cHHHH-HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEEEc-CCEEEEECCC
Confidence 34443 5677799999999999999999999999999987 4588866555 5555544443
No 14
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=26.68 E-value=1.2e+02 Score=27.97 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=39.9
Q ss_pred HHHcCCCCCceEEeccCCchhhHHHHHHHHHhc-------CceEEEEecCCCcccHHHHHHHHHhh
Q 014482 297 MRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLV-------SELVRIDCQGLERSDYKKIGCKLRDL 355 (423)
Q Consensus 297 LR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEk-------rELVKI~vl~n~~~D~keia~eLael 355 (423)
+.+++.+-+|++-++.+|.++.|++.++...+. ..++.+ -+|++++.+.|++.
T Consensus 132 ~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~------~d~~ee~~~~l~~~ 191 (215)
T 2a33_A 132 WAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVS------APTAKELVKKLEEY 191 (215)
T ss_dssp HHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEE------ESSHHHHHHHHHC-
T ss_pred HHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEE------eCCHHHHHHHHHHh
Confidence 567788889999999999999999988755432 233333 36789999999873
No 15
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=26.25 E-value=78 Score=29.07 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=38.2
Q ss_pred HHHcCCCCCceEEeccCCchhhHHHHHHHHHhcCceEEEEecC--CCcccHHHHHHHHH
Q 014482 297 MRKRGLAVPVLTKLAKNGYYGSLVPMVRDAFLVSELVRIDCQG--LERSDYKKIGCKLR 353 (423)
Q Consensus 297 LR~lA~~l~PifqLGKnGv~~~Lv~~V~eAlEkrELVKI~vl~--n~~~D~keia~eLa 353 (423)
|.+++.+-+|++-++.+|.++.|++.++. +.....|+-.-+. ...+|++++.+.|+
T Consensus 140 ~~qlg~~~kPvvlln~~gfw~~l~~~l~~-~~~~Gfi~~~~~~~i~~~d~~~e~~~~l~ 197 (199)
T 3qua_A 140 AGYLGMHDKPLILLDPFGHYDGLLTWLRG-LVPTGYVSQRAMDSLVVVDNVEAALEACA 197 (199)
T ss_dssp HHHTTSCCCCEEEECTTSTTHHHHHHHHH-TTTTTSSCHHHHHTSEEESSHHHHHHHHS
T ss_pred HHHhccCCCCEEEEcCCccchHHHHHHHH-HHHCCCCCHHHCCeEEEeCCHHHHHHHHh
Confidence 56677778999999999999999999974 4444333322211 12367777777765
No 16
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=24.89 E-value=1.6e+02 Score=24.51 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=48.9
Q ss_pred CccEEeCCCCCCHHHHHHHHHHHHh-CCeeEEEeCCCChHhHHHHHHHHHHhh-CCeEEE--EEccEEE
Q 014482 187 KRQINLGRDGLTHNMLNDIHNHWKH-AEAVRIKCLGVPTVDMKNVCFQLEDKT-FGKIIF--RHGGTLV 251 (423)
Q Consensus 187 kPvV~IGK~GLT~~VV~eI~~aLk~-hELVKIK~l~~~~~dmkeiae~LeekT-ggeVVq--~IG~viV 251 (423)
...|.||+.|+..-|+..+...|.. +.=|.||-.|..-...-.+++.|.++. +|.-|+ .+|...+
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i 74 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEI 74 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEE
Confidence 3789999999976666666466654 778899999987777779999999999 575546 3454443
No 17
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=24.83 E-value=27 Score=32.29 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred CcCcccccCCCCCHHHHHHHHHcCCCCCceEEeccCCchhhHHHHHHH-----HHhcC-ceEEEEe-cCCCcccHHHHHH
Q 014482 278 YPKLIKTTIEGLSIEETKEMRKRGLAVPVLTKLAKNGYYGSLVPMVRD-----AFLVS-ELVRIDC-QGLERSDYKKIGC 350 (423)
Q Consensus 278 ~p~ll~~~~e~LT~KQr~yLR~lA~~l~PifqLGKnGv~~~Lv~~V~e-----AlEkr-ELVKI~v-l~n~~~D~keia~ 350 (423)
|+..+-....+||.+|.+.||+.-+.- ..|.+|||.+..--+....+ .|++= +.++-.+ +--+..|+.+++.
T Consensus 19 ~~~v~v~~~~gl~~~ql~~lR~~lr~~-~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k 97 (213)
T 3jsy_A 19 KPVVAIVDMMDVPAPQLQEIRDKIRDK-VKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYK 97 (213)
T ss_dssp SSEEEEEECCSCCHHHHHHHHHHHTTT-EEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCC-CEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHH
Q ss_pred HHHh
Q 014482 351 KLRD 354 (423)
Q Consensus 351 eLae 354 (423)
.|.+
T Consensus 98 ~l~~ 101 (213)
T 3jsy_A 98 LLEE 101 (213)
T ss_dssp HHHH
T ss_pred HHHH
No 18
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=24.08 E-value=1.9e+02 Score=24.79 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=49.3
Q ss_pred CCccEEeCC--CCCCHHHHHHHHHHHHhCCeeEEEeCCCCh-HhHHHHHHHHHHhhC---CeEEEEEccEEEEecc
Q 014482 186 TKRQINLGR--DGLTHNMLNDIHNHWKHAEAVRIKCLGVPT-VDMKNVCFQLEDKTF---GKIIFRHGGTLVLYRG 255 (423)
Q Consensus 186 LkPvV~IGK--~GLT~~VV~eI~~aLk~hELVKIK~l~~~~-~dmkeiae~LeekTg---geVVq~IG~viVLYRg 255 (423)
-+|.|.|.- ++....++.+|-.-++...+ ..++..... .|...++.+-+..++ |.=|+..|.++|=||.
T Consensus 4 ~~PaI~i~~~~~~~~~~~l~~vl~GIEEEGi-p~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~ 78 (117)
T 1nbw_B 4 SPPGVRLFYDPRGHHAGAINELCWGLEEQGV-PCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQ 78 (117)
T ss_dssp -CCCEEEEECTTSCCHHHHHHHHHHHHHTTC-CEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETT
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHhhhhhcCC-CeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCC
Confidence 578888886 66678999999988887554 444444333 688888888888877 5556666778888874
No 19
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=22.19 E-value=2.6e+02 Score=25.92 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHcCCCCCceEEeccCCch---------------hhHHHHHHHHHhcCceEEEEe--cCCCcccHHHHH
Q 014482 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYY---------------GSLVPMVRDAFLVSELVRIDC--QGLERSDYKKIG 349 (423)
Q Consensus 287 e~LT~KQr~yLR~lA~~l~PifqLGKnGv~---------------~~Lv~~V~eAlEkrELVKI~v--l~n~~~D~keia 349 (423)
+.++-++...||++..+++-++.||-.+.. +.++++|.+.+++..+==|++ ..-...|.....
T Consensus 59 ~~~~~~~~~~lK~~~~~lKvllSiGG~~~~~~~~~~~~~~~~~~r~~fi~si~~~l~~~gfDGiDiDwE~p~~~d~~~~~ 138 (275)
T 3sim_A 59 SILGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHFQNTDKNTFA 138 (275)
T ss_dssp TTSCHHHHHHHHHHCTTEEEEEEEECSEETTEECCCCCSCHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTSCHHHHH
T ss_pred ccccHHHHHHHHHhCCCCEEEEEEcCCCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhCCCeEEEEeecCCcccHHHHH
Confidence 356799999999999999999999865432 456788888999998866666 332334554444
Q ss_pred HHHHh
Q 014482 350 CKLRD 354 (423)
Q Consensus 350 ~eLae 354 (423)
..|++
T Consensus 139 ~ll~e 143 (275)
T 3sim_A 139 ECIGR 143 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 20
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.61 E-value=1.2e+02 Score=22.75 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=29.3
Q ss_pred eEEEEecCCCcccHHHHHHHHHhhcCCEEEEEe---CCEEEEEcCCCCC
Q 014482 332 LVRIDCQGLERSDYKKIGCKLRDLVPCILVTFE---KEQIVVWRGKDYK 377 (423)
Q Consensus 332 LVKI~vl~n~~~D~keia~eLaelTg~~lVq~i---G~~IVLYRgk~~~ 377 (423)
+|+.+-....+-+.+++..+|.-+-.--+|-++ |..-|+||.++.+
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 344444455677888888888765444444444 7889999998754
No 21
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=21.01 E-value=3.1e+02 Score=23.48 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHcCCCCCceEEeccCC--chhhHHHHHHHHHhcCceEE-EEecCCCcccHHHHHHHHHh
Q 014482 288 GLSIEETKEMRKRGLAVPVLTKLAKNG--YYGSLVPMVRDAFLVSELVR-IDCQGLERSDYKKIGCKLRD 354 (423)
Q Consensus 288 ~LT~KQr~yLR~lA~~l~PifqLGKnG--v~~~Lv~~V~eAlEkrELVK-I~vl~n~~~D~keia~eLae 354 (423)
.+...=+.+|.++...-++++-++=.| -+...+..+++.++...+.. +.|.+ ...++|..=|++
T Consensus 101 ~~~~~~~~fl~~~~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~~~~~~~g~~~~~---~~~~~i~~Wl~~ 167 (171)
T 4ici_A 101 LAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNR---TDEKAIRAWLDV 167 (171)
T ss_dssp BCCHHHHHHHHHSCCTTSEEEEEEECSSCCSHHHHHHHHHHSTTSEECCCEECSS---CCHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCcCEEEEEEecCCCCcchHHHHHHHHcCCCeeccCeEecC---CCHHHHHHHHHH
Confidence 445556778888755556666665554 34678899999998776543 22333 244555555554
No 22
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=20.62 E-value=35 Score=30.28 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHcCCCCCceEEeccCCchhh
Q 014482 287 EGLSIEETKEMRKRGLAVPVLTKLAKNGYYGS 318 (423)
Q Consensus 287 e~LT~KQr~yLR~lA~~l~PifqLGKnGv~~~ 318 (423)
.+||.+|.+.||+..+.-...|.++||.+..-
T Consensus 30 ~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~ 61 (173)
T 2j01_J 30 QGLPAKETHALRQALKQNGARLFVAKNTLIRL 61 (173)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEEehhHHHHH
Confidence 48999999999999888788999999987543
No 23
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=20.51 E-value=2.2e+02 Score=23.34 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCccEEeCCCCCCHHHHHHHHHHHHh-CCeeEEEeCCCChHhHHHHHHHHHHhhCCe-E-EE--EEccEEE
Q 014482 186 TKRQINLGRDGLTHNMLNDIHNHWKH-AEAVRIKCLGVPTVDMKNVCFQLEDKTFGK-I-IF--RHGGTLV 251 (423)
Q Consensus 186 LkPvV~IGK~GLT~~VV~eI~~aLk~-hELVKIK~l~~~~~dmkeiae~LeekTgge-V-Vq--~IG~viV 251 (423)
-...|.||+.|+..-|...+ ..|.. +.=|.||-.|..--..-.+++.|.++..+. + ++ .+|...+
T Consensus 8 ~~n~I~V~~k~v~~YV~~a~-~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i 77 (97)
T 2bky_A 8 PSNVVLIGKKPVMNYVLAAL-TLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVV 77 (97)
T ss_dssp -CCEEECCSSCHHHHHHHHH-HHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEE
T ss_pred CCCEEEEcCcCHHHHHHHHH-HHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEE
Confidence 35789999999654444444 55654 788999999977767779999999998553 4 45 3555444
Done!