BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014483
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/422 (72%), Positives = 355/422 (84%), Gaps = 1/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
MP P+++AFGILK+ AA+VN +YGLDP I AIM+AA EVAEGKLNDHFPLVVWQTGSGT
Sbjct: 68 MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGT 127
Query: 61 QSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
Q+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E + L
Sbjct: 128 QTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVL 187
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
+P L+ LH++L +KS EF I+KIGRTHTQDA PLTLGQEFSGY QVKY + R+ +P
Sbjct: 188 LPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMP 247
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
R+Y+LA GGTAVGTGLNT+ GF K+A+ VA T LPFVTA NKFEALAAHDA VE SGA
Sbjct: 248 RIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGA 307
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
+NT A SLMKIAND+R LGSGPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV
Sbjct: 308 MNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQV 367
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
+GNHVA+TVGGSNGHFELNVFKPM+ +LHS RLLGDAS SF +NCV GIQAN ERI+K
Sbjct: 368 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINK 427
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
L++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD V P+ M+
Sbjct: 428 LMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDML 487
Query: 420 GP 421
GP
Sbjct: 488 GP 489
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 583 bits (1503), Expect = e-167, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 337/422 (79%), Gaps = 1/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP P+V AFG+LKK AA VN G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSG
Sbjct: 66 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSG 125
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + L
Sbjct: 126 TQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL 185
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
IP L L N+L +KS EF IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L
Sbjct: 186 IPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 245
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+ LAQGGTAVGTGLNTK GFDVKIA +++ET L F TA N+FEALAAHDA VE SGA
Sbjct: 246 TLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA 305
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
LNT+A SL KIA D+R LGSGPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV
Sbjct: 306 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQV 365
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
+GN+ AIT GS G FELNVFKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +
Sbjct: 366 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHE 425
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+
Sbjct: 426 LLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 485
Query: 420 GP 421
GP
Sbjct: 486 GP 487
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/421 (64%), Positives = 323/421 (76%), Gaps = 2/421 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP+ ++RA ILKKCAA+VN E+G L+ I +I +A + G+ D+FPLVVWQTGSG
Sbjct: 61 MPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSG 120
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQ+NMN NEVIA+ A E L K+G K VHPNDHVN+ QSSND+FPT MHIA + T +
Sbjct: 121 TQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQ 180
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP L L L KS ++ I+KIGRTH QDATPLTL QEFSGY TQ++Y ++R+ L
Sbjct: 181 LIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDAL 240
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
++Y LAQGGTAVGTG+N+K GFD+K A VAE T PF TA NKFE+LAAHDA VE SG
Sbjct: 241 KKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSG 300
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
LNT+A SLMKIAND+RLLGSGPRCGLGEL LPENEPGSSIMPGKVNPTQ EALTMVC Q
Sbjct: 301 TLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQ 360
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GNHV +T+ GSNGH ELNVFKP+I +L S+ LL D+ SF +CV+G++ N RI+
Sbjct: 361 VMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARIN 420
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
L +SLMLVT LNP IGYDNAA +AK+AHK G TLK+AA KL L+ EEFD +VVPEKM
Sbjct: 421 TLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKM 480
Query: 419 I 419
I
Sbjct: 481 I 481
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/424 (62%), Positives = 310/424 (73%), Gaps = 2/424 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
P IVRA GI+K+ AA+ N G LDPAIG AI++AAQEV +GKL++HFPLVVWQTGSG
Sbjct: 72 QPLAIVRALGIVKQAAARANXALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSG 131
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSN NANEV++NRA E+LG G +K VHPNDHVN SQSSNDT+PT HIA A
Sbjct: 132 TQSNXNANEVVSNRAIELLGGVXGSKKPVHPNDHVNXSQSSNDTYPTAXHIACAERVIHD 191
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+P LK LH +L K F I+KIGRTHTQDATPLTLGQEFSGY QV I R+ L
Sbjct: 192 LLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEXTL 251
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LAQGGTAVGTGLN GF K+A +A T + F +A NKFEALAAHD+ V + G
Sbjct: 252 PGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSXVFSHG 311
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
A+N AA+L KIAND+R LGSGPR GLGEL LPENEPGSSI PGKVNPTQCEALT VC Q
Sbjct: 312 AINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPGSSIXPGKVNPTQCEALTQVCVQ 371
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V GNH A+T GS GHFELNV+ P+ A L S++LL DA+ SF NCV GI+A + I
Sbjct: 372 VFGNHAALTFAGSQGHFELNVYNPLXAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIK 431
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
L SL LVT+L PKIGYDNAA +AK AHK GTTL++ A+ G + EEFD +V PE
Sbjct: 432 AALDRSLXLVTALAPKIGYDNAAKIAKTAHKNGTTLREEAVGGGYVTDEEFDAVVRPETX 491
Query: 419 IGPS 422
IGP+
Sbjct: 492 IGPA 495
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From
Burkholderia Pseudomallei
Length = 459
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/421 (62%), Positives = 309/421 (73%), Gaps = 3/421 (0%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
PE ++ A ++K+ AA VN+E G L AI+ AA E+ G+ D FPL VWQTGSGT
Sbjct: 38 PE-LIHALALIKRAAAAVNLELGVLAQDKANAIVAAADEIIAGRHADEFPLAVWQTGSGT 96
Query: 61 QSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
Q+NMN NEVIANRA+E+LG +RGE + VHPND VNR QSSND FPT MHIAAA L
Sbjct: 97 QTNMNLNEVIANRASELLGGERGESRAVHPNDDVNRGQSSNDVFPTAMHIAAARAIVDHL 156
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
+P L+ L +L +K+ F DIVKIGRTH QDATPLTLGQEFSGY Q+ GI V LP
Sbjct: 157 LPALRTLRATLDAKAAAFADIVKIGRTHLQDATPLTLGQEFSGYVAQLDQGIRHVEAALP 216
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+Y+LAQGGTAVGTGLN F +A+ + T LPFV+A NKFE +AA DA V GA
Sbjct: 217 HLYELAQGGTAVGTGLNAHPKFAAGVAAEIGRLTGLPFVSAPNKFEVMAAADALVFAHGA 276
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
L TVAASLMKIAND+R L SGPRCGLGEL +PENEPGSSIMPGKVNPTQ EA+TM+C QV
Sbjct: 277 LKTVAASLMKIANDIRWLASGPRCGLGELSIPENEPGSSIMPGKVNPTQSEAVTMLCCQV 336
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
GN VA+ GG++G+FELNVF+PMIA +L S+RLL D + F +C GI+ NR RI
Sbjct: 337 FGNDVAVNFGGASGNFELNVFRPMIAHNVLQSVRLLADGAQGFNDHCAVGIEPNRARIDA 396
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
LL+ESLMLVT+LNP IGYD AA +AKKAHKEGTTLK AAL LG + +FD V PE M+
Sbjct: 397 LLNESLMLVTALNPHIGYDKAAQIAKKAHKEGTTLKAAALALGYVTDAQFDEWVRPEHMV 456
Query: 420 G 420
G
Sbjct: 457 G 457
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/422 (61%), Positives = 314/422 (74%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + GL AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG E+ VHPND VN+SQSSND FPT MH+AA + +
Sbjct: 100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRTH QDATPLTLGQE SG+ +++ + + L
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 220 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 280 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 340 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 400 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 459
Query: 419 IG 420
+G
Sbjct: 460 VG 461
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/422 (61%), Positives = 314/422 (74%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + GL AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG E+ VHPND VN+SQSSND FPT MH+AA + +
Sbjct: 100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRTH QDATPLTLGQE SG+ +++ + + L
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 220 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 280 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 340 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 400 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 459
Query: 419 IG 420
+G
Sbjct: 460 VG 461
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/422 (61%), Positives = 314/422 (74%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + GL AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG E+ VHPND VN+SQSSND FPT MH+AA + +
Sbjct: 100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRTH QDATPLTLGQE SG+ +++ + + L
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 220 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PEN+PGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 280 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENQPGSSIMPGKVNPTQCEALTMLCCQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 340 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 400 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 459
Query: 419 IG 420
+G
Sbjct: 460 VG 461
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/422 (61%), Positives = 314/422 (74%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + GL AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG E+ VHPND VN+SQSSND FPT MH+AA + +
Sbjct: 100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRT+ QDATPLTLGQE SG+ +++ + + L
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 220 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 280 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 340 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 400 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 459
Query: 419 IG 420
+G
Sbjct: 460 VG 461
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/422 (61%), Positives = 314/422 (74%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + GL AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG E+ V+PND VN+SQSSND FPT MH+AA + +
Sbjct: 100 TQSNMNMNEVLANRASELLGGVRGMERKVNPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRTH QDATPLTLGQE SG+ +++ + + L
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 220 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 280 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 340 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 400 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 459
Query: 419 IG 420
+G
Sbjct: 460 VG 461
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/424 (56%), Positives = 296/424 (69%), Gaps = 1/424 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP I+RA+G+LKK AA+ N+E G L I KAI+QAA+EV +GK +DHFPLVV+QTGSG
Sbjct: 41 MPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSG 100
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQ+NMN NEVIANRA+EILG G K HPNDHVNR QSSNDTFPT M++A A+ + RL
Sbjct: 101 TQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRL 160
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
P ++ L + +K+ F IVK+GRTH DA P+TLGQE + Q+K + V
Sbjct: 161 YPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEK 220
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+Y LA GGTAVGTGLN F +A +AEET LPF AEN+F ALAAHD V GA
Sbjct: 221 GLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGA 280
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
+ T+A +LMKI NDVR L SGP G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V
Sbjct: 281 IRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRV 340
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
GN + GS G+F+LNV+KP++A L S+ LL DA ASF+ + +GI+ N ERI +
Sbjct: 341 YGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEE 400
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
L ++ ML T+LN IGYD AA + KKA KE TLK AAL+LG L EEFD +VVP ++
Sbjct: 401 YLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLA 460
Query: 420 GPSD 423
P +
Sbjct: 461 KPHE 464
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/411 (53%), Positives = 278/411 (67%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VNM+ GL P +AI+ AA E+A+G+ +D FP+ V+QTGSGT SNM
Sbjct: 60 IRALGLLKGACAQVNMDLGLLAPEKAEAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNM 119
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ A VHPND VN SQSSNDTFPT HIAA S LIP L+
Sbjct: 120 NTNEVIASIAGA------NGVAVHPNDDVNMSQSSNDTFPTATHIAATEAAVSHLIPALE 173
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
+L ++L +K++E++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV LPR+ +L
Sbjct: 174 ILQDALATKALEWQSVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRATLPRLGEL 233
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN +GF VK+ S + +T LP TA N FEA AA D VE SGAL T+
Sbjct: 234 AIGGTAVGTGLNAPEGFGVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTI 293
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN
Sbjct: 294 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGND 353
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
A+ GG+NG FELNV+ PM+A +L S LL + S F + C+ G+ AN E + +L
Sbjct: 354 AAVAWGGANGAFELNVYIPMMARNILESFTLLTNVSKLFAQRCIAGLTANAEHLRELAES 413
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ EE D
Sbjct: 414 SPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDKLSLEELD 464
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 277/411 (67%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNM
Sbjct: 73 IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNM 132
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ AA +G +HPND VN SQSSNDTFPT HIAA + LIP L+
Sbjct: 133 NTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQ 186
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
LH++L +K++++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +L
Sbjct: 187 QLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGEL 246
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN F V++ + + +T L TA N FEA AA D VE SGAL T+
Sbjct: 247 AIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTI 306
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN
Sbjct: 307 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGND 366
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AI GG+NG FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 367 AAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAES 426
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ E+ D
Sbjct: 427 SPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLD 477
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 277/411 (67%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNM
Sbjct: 52 IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNM 111
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ AA +G +HPND VN SQSSNDTFPT HIAA + LIP L+
Sbjct: 112 NTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQ 165
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
LH++L +K++++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +L
Sbjct: 166 QLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGEL 225
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN F V++ + + +T L TA N FEA AA D VE SGAL T+
Sbjct: 226 AIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTI 285
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN
Sbjct: 286 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGND 345
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AI GG+NG FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 346 AAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAES 405
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ E+ D
Sbjct: 406 SPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLD 456
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/411 (52%), Positives = 277/411 (67%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNM
Sbjct: 51 IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNM 110
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ AA +G +HPND VN SQSSNDTFPT HIAA + LIP L+
Sbjct: 111 NTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQ 164
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
LH++L +K++++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +L
Sbjct: 165 QLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGEL 224
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN F V++ + + +T L TA N FEA AA D VE SGAL T+
Sbjct: 225 AIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTI 284
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PG+SIMPGKVNP EA+T V AQVIGN
Sbjct: 285 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGASIMPGKVNPVLPEAVTQVAAQVIGND 344
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AI GG+NG FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 345 AAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAES 404
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ E+ D
Sbjct: 405 SPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLD 455
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 390 bits (1002), Expect = e-109, Method: Compositional matrix adjust.
Identities = 214/411 (52%), Positives = 276/411 (67%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL P AI+ AA E+A+G+ +D FP+ V+QTGSGT SNM
Sbjct: 51 IRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNM 110
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ AA +G +HPND VN SQSSNDTFPT HIAA + LIP L+
Sbjct: 111 NTNEVIASIAA------KGGVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQ 164
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
LH++L +K++++ +VK GRTH DA P+TLGQEFSGY Q++ GI+RV CLPR+ +L
Sbjct: 165 QLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGEL 224
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN F V++ + + +T L TA N FEA AA D VE SGAL T+
Sbjct: 225 AIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTI 284
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PG SIMPGKVNP EA+T V AQVIGN
Sbjct: 285 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGCSIMPGKVNPVLPEAVTQVAAQVIGND 344
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AI GG+NG FELNV+ PM+A +L S +LL + S F + C+ G+ AN E + +L
Sbjct: 345 AAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAES 404
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ E+ D
Sbjct: 405 SPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLD 455
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/411 (53%), Positives = 271/411 (65%), Gaps = 12/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL DP AI+ AA E+AEGK +D FP+ V+QTGSGT SNM
Sbjct: 70 IRALGLLKAACAQVNKDLGLLDPEKADAIIAAAGEIAEGKHDDQFPIDVFQTGSGTSSNM 129
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVIA+ AA VHPNDHVN SQSSNDTFPT HIAA LIP L+
Sbjct: 130 NTNEVIASIAAA------NGVTVHPNDHVNMSQSSNDTFPTATHIAATEAAVRHLIPALE 183
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
VLH SL +K+ +++ +VK GRTH DA P+TLGQEF GY Q++ GI+RV LPR+ +L
Sbjct: 184 VLHASLAAKAKQWRTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGEL 243
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
A GGTAVGTGLN +GF K+ + ET L TA + FEA AA D VE SGAL T+
Sbjct: 244 AIGGTAVGTGLNAPEGFGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTI 303
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A SL KIAND+R +GSGP GL E+ LP+ +PGSSIMPGKVNP EA+T V QV+GN
Sbjct: 304 AVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVACQVVGND 363
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AI GG++G FELNV+ PM+A LL S LL + S F + C+ G+ AN ER+ +L
Sbjct: 364 AAIAFGGASGAFELNVYIPMMARNLLESFTLLSNVSRLFAERCIDGLVANEERLRELAES 423
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AA VAK+A E T++ + G+ L+ EE D
Sbjct: 424 SPSIVTPLNSAIGYEEAAKVAKQALAEKKTIRQTVIDRGLIGDKLSLEELD 474
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/411 (52%), Positives = 270/411 (65%), Gaps = 10/411 (2%)
Query: 6 VRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA G+LK A+VN + GL AI+ AAQE+A+GK +D FP+ V+QTGSGT SNM
Sbjct: 52 IRALGLLKGACAQVNKDLGLLAAEKADAIIAAAQEIADGKHDDQFPIDVFQTGSGTSSNM 111
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
NANEVIA+ AA+ +VHPND VN SQSSNDTFPT H+AA LIP L+
Sbjct: 112 NANEVIASIAAQ----ATPPVVVHPNDDVNMSQSSNDTFPTATHLAATEAAVRDLIPALE 167
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
L +L +K+ +K +VK GRTH DA P+TLGQEF GY Q++ GI+RV LPR+ +L
Sbjct: 168 YLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGEL 227
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLP-FVTAENKFEALAAHDAFVETSGALNTV 243
GGTAVGTGLN GF K+ + + T L TA + FEA AA D VE SGAL T+
Sbjct: 228 PIGGTAVGTGLNAPDGFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTI 287
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
AASL KIAND+R +GSGP GLGE+ LP+ +PGSSIMPGKVNP EA+T V AQVIGN
Sbjct: 288 AASLTKIANDIRWMGSGPLTGLGEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGND 347
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
AITVGG +G FELNV+ P++A LL S LL + S F CV G+ AN + + L
Sbjct: 348 AAITVGGLSGAFELNVYIPVMARNLLESFTLLANVSRLFVDKCVDGLVANEDHLRTLAES 407
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGV----LNSEEFD 410
S +VT LN IGY+ AAAVAK+A KE T++ + G+ L+ EE D
Sbjct: 408 SPSIVTPLNSAIGYEEAAAVAKEALKERKTIRQTVIDRGLIGDKLSIEELD 458
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 353 bits (907), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 179/422 (42%), Positives = 264/422 (62%), Gaps = 4/422 (0%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
PE ++++ GI+KK AA NME GL D +G+ I++AA EV EGK ND F + Q G+GT
Sbjct: 43 PE-LIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGT 101
Query: 61 QSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
NMNANEVIANRA E++G ++G + PN HVN SQS+ND FPT HIA N +L
Sbjct: 102 SINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QL 160
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
I K + K+ EF ++K+GRTH QDA P+ LGQEF Y + I+R+
Sbjct: 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRN 220
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+Y + G TAVGTGLN + + +A+ + P +A++ +A D + E S A
Sbjct: 221 NLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSA 280
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
L ++ KIAND+RL+ SGPR GL E++LP +PGSSIMPGKVNP E + V QV
Sbjct: 281 LKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQV 340
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
GN + IT G FELNV +P++ L+ S+ ++ + SF +NC++GI+AN ER+ +
Sbjct: 341 FGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
+ +S+ ++T++NP +GY+ AA +A++A+ G ++++ +K GVL E+ + ++ P +MI
Sbjct: 401 YVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMI 460
Query: 420 GP 421
P
Sbjct: 461 HP 462
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 176/423 (41%), Positives = 249/423 (58%), Gaps = 8/423 (1%)
Query: 5 IVRAFGILKKCAAKVNMEYGLDPAIG-KAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSN 63
+VRA ++KK AA N + P AI+ A ++ +G L + F + V+Q G+GT SN
Sbjct: 48 LVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSN 107
Query: 64 MNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPN 122
MNANEVIANRA E LG RG+ + +HPND VN SQS+ND +PT + +A + N ++
Sbjct: 108 MNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTA 166
Query: 123 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV--ICCLPR 180
L L + +K EF ++KIGRT QDA P+TLGQEF + ++ R+ + L R
Sbjct: 167 LHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFR 226
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
L GGTA+GT +N + + +++ + + N EA AFV SG L
Sbjct: 227 EVNL--GGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGIL 284
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
+A L KIAND+RLL SGPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVI
Sbjct: 285 RRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVI 344
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
GN + +T+ +G +LN F+P+I +L S+RLLG A + + CV GI+AN ER
Sbjct: 345 GNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAG 404
Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
ES+ L T+L P +GY AA +AK+A G T+ + A+ G L++ ++ P +M
Sbjct: 405 AEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRMAF 463
Query: 421 PSD 423
P +
Sbjct: 464 PPE 466
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/360 (44%), Positives = 221/360 (61%), Gaps = 4/360 (1%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
PE ++++ GI+KK AA NME GL D +G+ I++AA EV EGK ND F + Q G+GT
Sbjct: 43 PE-LIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGT 101
Query: 61 QSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
NMNANEVIANRA E++G ++G + PN HVN SQS+ND FPT HIA N +L
Sbjct: 102 SINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLN-QL 160
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
I K + K+ EF ++K+GRTH QDA P+ LGQEF Y + I+R+
Sbjct: 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRN 220
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+Y + G TAVGTGLN + + +A+ + P +A++ +A D + E S A
Sbjct: 221 NLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSA 280
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
L ++ KIAND+RL+ SGPR GL E++LP +PGSSIMPGKVNP E + V QV
Sbjct: 281 LKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQV 340
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
GN + IT G FELNV +P++ L+ S+ ++ + SF +NC++GI+AN ER+ +
Sbjct: 341 FGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKE 400
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/418 (41%), Positives = 247/418 (59%), Gaps = 8/418 (1%)
Query: 5 IVRAFGILKKCAAKVNMEYGLDPAIG-KAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSN 63
+VRA ++KK AA N + P AI+ A ++ +G L + F + V+Q G+GT SN
Sbjct: 65 LVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSN 124
Query: 64 MNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPN 122
MNANEVIANRA E LG RG+ + +HPND VN SQS+ND +PT + +A + N ++
Sbjct: 125 MNANEVIANRALEHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQN-QVQTA 183
Query: 123 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV--ICCLPR 180
L L + +K EF ++KIGRT QDA P+TLGQEF + ++ R+ + L R
Sbjct: 184 LHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFR 243
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
L GGTA+GT +N + + +++ + + N EA AFV SG L
Sbjct: 244 EVNL--GGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGIL 301
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
+A L KIAND+RLL SGPR GLGE+ LP +PGSSIMPGKVNP E++ VC QVI
Sbjct: 302 RRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVI 361
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
GN + +T+ +G +LN F+P+I +L S+RLLG A + + CV GI+AN ER
Sbjct: 362 GNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAG 421
Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
ES+ L T+L P +GY AA +AK+A G T+ + A+ G L++ ++ P +M
Sbjct: 422 AEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAISKG-LDASALTIMLDPLRM 478
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/425 (39%), Positives = 250/425 (58%), Gaps = 5/425 (1%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGS 58
+PE VR ++KK AA N E P ++ AI+ A EV GK D FP+ V+Q G+
Sbjct: 44 IPE-FVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA 102
Query: 59 GTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS 117
GT NMN NEV+AN E++GH++GE + ++PNDHVN+ QS+ND +PT IA +
Sbjct: 103 GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAV-YSSLI 161
Query: 118 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 177
+L+ + L K+VEF+DI+K+GRT QDA P+TLGQEF ++ +K + +
Sbjct: 162 KLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRT 221
Query: 178 LPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237
+ ++ G TA+GTGLNT K + +AE T P V AE+ EA + A+V
Sbjct: 222 AELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVH 281
Query: 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCA 297
GAL +A + KI ND+RLL SGPR GL E+ LPE + GSSIMP KVNP E + VC
Sbjct: 282 GALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCF 341
Query: 298 QVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
+VIGN +T+ G +LNV +P+I + S+ +L +A + + C+ GI AN+E
Sbjct: 342 KVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVC 401
Query: 358 SKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEK 417
++ S+ +VT LNP IG+ N V K + G ++++ L+ G+L E D++ +
Sbjct: 402 EGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSVQN 461
Query: 418 MIGPS 422
++ P+
Sbjct: 462 LMHPA 466
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 96 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 155
+Q DT TV+ I + SR I +++ +L + + +D GRTH Q A P+T
Sbjct: 104 TQDIMDT-ATVLQIRDGLALISRRIESVR---KALAALARNHRDTPMAGRTHLQHALPVT 159
Query: 156 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 215
G + + + + R+ PR+ + G + +G DV+ A +
Sbjct: 160 FGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGV 219
Query: 216 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 273
P +T + A DA ET L V+ SL K+A D+ ++ + LGE+ P +
Sbjct: 220 PSITWHS------ARDAVAETVQFLALVSGSLGKLAMDISIMMT---TELGEVAEPFVRH 270
Query: 274 EPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
SS MP K NP CE L + A+++ NH
Sbjct: 271 RGASSTMPQKQNPVSCE-LILAGARIVRNH 299
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 92 HVNRSQSSNDTFPT--VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQ 149
+V+ +S D T V+ + A++ + +L L ++L ++++ D +GRT Q
Sbjct: 99 YVHLGATSQDAMDTGLVLQLRDALDL---IEADLGKLADTLSQQALKHADTPLVGRTWLQ 155
Query: 150 DATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAV 209
ATP+TLG + +G + R+ PR+ L GG + K V A A+
Sbjct: 156 HATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPV--AEAL 213
Query: 210 AEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 269
AE+ L E + D VE + L VA SL K D+ LL + GE+
Sbjct: 214 AEQ--LKLTLPEQPWH--TQRDRLVEFASVLGLVAGSLGKFGRDISLL---MQTEAGEVF 266
Query: 270 LPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
P + GSS MP K NP L +V G
Sbjct: 267 EPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPG 300
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 22/201 (10%)
Query: 114 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGI-- 171
++ S +I +L+ L +SL +K+ E K+I+ +GR+H A P++ GQ+F G + K +
Sbjct: 108 DSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 172 --DRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA 229
D L + A G + T + KK D I EE S + + + ++
Sbjct: 168 LKDFQKDGLTVQFSGAVGNYCILTTEDEKKAAD--ILGLPVEEVSTQVIPRDRIAKLISI 225
Query: 230 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI--LPENEPGSSIMPGKVNPT 287
H +A+++ ++A ++R L R + E+ + + GSS MP K NP
Sbjct: 226 H----------GLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPI 272
Query: 288 QCEALTMVCAQVIGNHVAITV 308
E LT + A+++ +HV+I +
Sbjct: 273 STENLTGM-ARMLRSHVSIAL 292
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 15/167 (8%)
Query: 144 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFD 202
G TH Q A P+ L F Y +K R+ R+ + G A+ GTG + F
Sbjct: 156 GYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFT 215
Query: 203 VKIASAVAEETSLPF-VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGP 261
+ L F N +A+A+ D +E ALN L ++A ++ +L S
Sbjct: 216 AR---------ELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEEL-ILYSTE 265
Query: 262 RCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAIT 307
G E+ P+ GSSIMP K NP E + +V+G V ++
Sbjct: 266 EFGFVEV--PDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLS 310
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 131/318 (41%), Gaps = 52/318 (16%)
Query: 132 SKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV 191
S++ ++ V +GRT Q A P+TLG + + + + K +DR+ R+ +AQ G AV
Sbjct: 142 SQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL-VAQLGGAV 200
Query: 192 GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIA 251
G+ + + + + A A++ L E D VE + L + ++ K+A
Sbjct: 201 GSLASLQDQGSI-VVEAYAKQLKLGQTACTWHGE----RDRIVEIASVLGIITGNVGKMA 255
Query: 252 NDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPT----------QCEALTMVCAQV 299
D L+ + + E+ P + GSS MP K NP + AL Q
Sbjct: 256 RDWSLM---MQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS 312
Query: 300 IGNHVAITVGGSNGHF-ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
+ ++G + + L + A L +L +L +G++ N E +
Sbjct: 313 MVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVL------------KGMEVNAENMH 360
Query: 359 K--------LLHESLMLVTSLNPKIGYDNA----AAVAKKAHKEGTTLKDAALKLG---- 402
+ ++ E++M+ +L P +G NA A K A E LKD ++
Sbjct: 361 QNIECTHGLIMAEAVMM--ALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQ 418
Query: 403 VLNSEEFDNLVVPEKMIG 420
N + D + PE +G
Sbjct: 419 YFNPSQLDEIFKPESYLG 436
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
pdb|2QGA|C Chain C, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp
Bound
Length = 465
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 31/228 (13%)
Query: 76 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 135
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 99 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAV 158
Query: 136 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 184
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 159 EYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 218
Query: 185 AQGGT-AVGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 242
A T V T GL KK F++ + + + HD E L
Sbjct: 219 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 263
Query: 243 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 290
+L+ + D+ L S L +L + E E GSS MP KVNP E
Sbjct: 264 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFE 308
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 15/183 (8%)
Query: 114 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 173
+ N L+ +L+ + + K+ E K V +GRTH A P T G + + + ++K ++R
Sbjct: 108 QANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLER 167
Query: 174 VICCLPRMYQLAQGGTAVGT---GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAH 230
++ A+ G VG + T D + V E+ L + H
Sbjct: 168 --------FKQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRH 219
Query: 231 DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 290
++ T L +A S+ K A ++R L + E + + GSS MP K NP E
Sbjct: 220 ADYMAT---LALIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSE 275
Query: 291 ALT 293
+T
Sbjct: 276 NMT 278
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
pdb|2HVG|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Plasmodium Vivax
Length = 482
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 31/228 (13%)
Query: 76 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 135
E L + + E ++ ++V+ +S D N +IP L+ + L +V
Sbjct: 116 EKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIXLKLKDLAV 175
Query: 136 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYG---IDRVICCLP--------RMYQL 184
E+ + + RTH Q A+ T G+E + + ++ + I RV C +++
Sbjct: 176 EYSHVPLLSRTHGQPASSTTFGKEXANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKV 235
Query: 185 AQGGT-AVGT-GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNT 242
A T V T GL KK F++ + + + HD E L
Sbjct: 236 ASKDTDWVNTIGLFLKKHFNLTYSIYCTQ---------------IQDHDYICELCDGLAR 280
Query: 243 VAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 290
+L+ + D+ L S L +L + E E GSS P KVNP E
Sbjct: 281 ANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTXPHKVNPIDFE 325
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 37/275 (13%)
Query: 98 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 92 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 150
Query: 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA---EETS 214
+ G+ +++K + R+ + + + AVG N + K S + E S
Sbjct: 151 LKVLGWYSEMKRNVQRLERAIEEV-SYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS 209
Query: 215 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 272
V + H ++ T L VAA + +IA ++R L R + E+ P +
Sbjct: 210 TQVVPRDR-------HAFYLST---LAIVAAGIERIAVEIRHL---QRTEVLEVEEPFRK 256
Query: 273 NEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFELNVFKPMI 324
+ GSS MP K NP CE LT M+ A V + I + S+ E VF P
Sbjct: 257 GQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDA 315
Query: 325 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
L + + +A+ N VR ++ N ER+ K
Sbjct: 316 TQTLYYMI-----VTAT---NVVRNMKVNEERMKK 342
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 117/275 (42%), Gaps = 37/275 (13%)
Query: 98 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157
+S+D T +A +E L+ +LK + L + +K IGRTH A P + G
Sbjct: 93 TSSDVLDTANSLAL-VEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFG 151
Query: 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVA---EETS 214
+ G+ +++K + R+ + + + AVG N + K S + E S
Sbjct: 152 LKVLGWYSEMKRNVQRLERAIEEV-SYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS 210
Query: 215 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 272
V + H ++ T L VAA + +IA ++R L R + E+ P +
Sbjct: 211 TQVVPRDR-------HAFYLST---LAIVAAGIERIAVEIRHL---QRTEVLEVEEPFRK 257
Query: 273 NEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITVGG----SNGHFELNVFKPMI 324
+ GSS MP K NP CE LT M+ A V + I + S+ E VF P
Sbjct: 258 GQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVF-PDA 316
Query: 325 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
L + + +A+ N VR ++ N ER+ K
Sbjct: 317 TQTLYYMI-----VTAT---NVVRNMKVNEERMKK 343
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 39/229 (17%)
Query: 92 HVNRSQSSNDTFPT-----VMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRT 146
+V+ +SND T + AA++ +R + + L S + ++K + +GRT
Sbjct: 89 YVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGD------QLASMARKYKTLEMVGRT 142
Query: 147 HTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIA 206
H Q A P+TLG +F+ Y ++ ++ L + A+ G AVGT + + +++
Sbjct: 143 HGQWAEPITLGFKFANYYYELYIACRQL--ALAEEFIRAKIGGAVGT-MASWGELGLEVR 199
Query: 207 SAVAEETSLP--FVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCG 264
VAE LP +T + +A ++F + AL +AA ++A ++R
Sbjct: 200 RRVAERLGLPHHVITTQ-----VAPRESFAVLASALALMAAVFERLAVEIR--------- 245
Query: 265 LGELILPE------NEPGSSIMPGKVNPTQCEALTMVCAQVIG-NHVAI 306
EL PE GSS MP K NPT E + + V HVA
Sbjct: 246 --ELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAF 292
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P + L + + +V+++DI + RTH Q ATP T+G+E + V Y ++R L
Sbjct: 169 ILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMAN----VAYRMERQYRQL 224
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 230
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 225 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 277
Query: 231 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 286
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 278 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 330
Query: 287 TQCE 290
E
Sbjct: 331 IDFE 334
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 14/211 (6%)
Query: 92 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 151
H RS+ ND T + + +T S L+ + L ++L + +D V G TH Q A
Sbjct: 104 HTGRSR--NDQVATDLKLWCK-DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA 160
Query: 152 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAE 211
P+T Y + R+ L R+ + +G G +++
Sbjct: 161 QPVTFAHWCLAYVEMLARDESRLQDALKRL-----DVSPLGCGALAGTAYEIDREQLAG- 214
Query: 212 ETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 270
L F +A N ++++ D +E A L + A D+ +G G EL
Sbjct: 215 --WLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG-EAGFVELS- 270
Query: 271 PENEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
GSS+MP K NP E + C +V G
Sbjct: 271 DRVTSGSSLMPQKKNPDALELIRGKCGRVQG 301
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 9/180 (5%)
Query: 114 ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDR 173
+ N ++ +L+ + L +K+ E K + +GRTH A P T G + + ++K ++R
Sbjct: 119 QANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 174 VICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 233
++ + AVGT N D + V E L + H +
Sbjct: 179 FKQA-ANTVRVGKLSGAVGTYAN----IDPFVEKYVCENLGLEAAPISTQTLQRDRHAHY 233
Query: 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALT 293
+ T L +A S+ K+A ++R L + E + + GSS MP K NP E +T
Sbjct: 234 MST---LALIATSIEKMAVEIRGLQKSETREVEE-AFAKGQKGSSAMPHKRNPIGSENMT 289
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 18/232 (7%)
Query: 70 IANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNS 129
+ +E LG +R K VH +S D T + + N + +L+ +
Sbjct: 73 FTRQVSETLGEER--KWVH------YGLTSTDVVDTALSFVIK-QANDIIEKDLERFIDV 123
Query: 130 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 189
L K+ +K + +GRTH A P T G + + + T+++ + R + ++ +
Sbjct: 124 LAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMQRNLQRFKQVREEI-EVGKMSG 182
Query: 190 AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMK 249
AVGT N +I S V + + + H ++ T L +A SL K
Sbjct: 183 AVGTFANIPP----EIESYVCKHLGIGTAPVSTQTLQRDRHAYYIAT---LALIATSLEK 235
Query: 250 IANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
A ++R L + E + + GSS MP K NP E +T + + G
Sbjct: 236 FAVEIRNLQKTETREVEEA-FAKGQKGSSAMPHKRNPIGSENITGISRVIRG 286
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
pdb|4EFC|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Trypanosoma Brucei, Tb427tmp.160.5560
Length = 472
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 88 HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTH 147
H + V+ +S D T + + + +P L + SL SK V++ D+ + RTH
Sbjct: 128 HVTEFVHFGLTSQDINNTAIPMMIRDAIVTLYLPALDGIIGSLTSKLVDW-DVPMLARTH 186
Query: 148 TQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT---------GLNTK 198
Q A+P L +EF + +++ R +C +P + G A G +N +
Sbjct: 187 GQPASPTNLAKEFVVWIERLREQ-RRQLCEVP---TTGKFGGATGNFNAHLVAYPSVNWR 242
Query: 199 KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLG 258
D+ +A + + EN ++ LA A + L+ + L+ + DV
Sbjct: 243 AFADMFLAKYLGLKRQQATTQIEN-YDHLA---ALCDACARLHVI---LIDMCRDVWQYI 295
Query: 259 SGPRCGLGELILPENEPGSSIMPGKVNPTQCE 290
S G + + E E GSS MP KVNP E
Sbjct: 296 S---MGFFKQKVKEGEVGSSTMPHKVNPIDFE 324
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P + L + L +V+++DI + RT+ Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTNGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 230
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 231 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 286
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 304
Query: 287 TQCE 290
E
Sbjct: 305 IDFE 308
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 26/251 (10%)
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQS+ + I R E++G G+ + +S N+ T + + ++++ +
Sbjct: 82 TQSDEDIQTAIERRLKELIGDIAGK--------LQTGRSRNEQVVTDLKLL--LKSSISV 131
Query: 120 IPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 177
I L+++ + ++E DI+ G TH Q A P+ Q + + +R+
Sbjct: 132 ISTHLLQLIKTLVERAAIEI-DIIMPGYTHLQKALPIRWSQFLLSHAVALTRDSERLGEV 190
Query: 178 LPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 236
R+ L G G G L D ++ + + TS+ N +A++ D VE
Sbjct: 191 KKRITVLPLGSGVLAGNPLE----IDRELLRSELDMTSITL----NSIDAISERDFVVEL 242
Query: 237 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE-NEPGSSIMPGKVNPTQCEALTMV 295
+ L K+A D+ + + G + L + GSS++P K NP E +
Sbjct: 243 ISVATLLMIHLSKLAEDLIIFST---TEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSK 299
Query: 296 CAQVIGNHVAI 306
+V G AI
Sbjct: 300 AGRVFGRLAAI 310
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P + L + L +V+++DI + RT Q ATP T+G+E + V Y ++R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMAN----VAYRMERQYRQL 198
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 230
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 231 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 286
D E + L+ DV L + GE+ GSS MP KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTMPHKVNP 304
Query: 287 TQCE 290
E
Sbjct: 305 IDFE 308
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P + L + L +V+++DI + RTH Q ATP T+G+E + V Y +R L
Sbjct: 143 ILPYWRQLIDGLKDLAVQYRDIPLLSRTHGQPATPSTIGKEXAN----VAYRXERQYRQL 198
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIAS---AVAEETSLPFVTA----ENKFEA-LAAH 230
++ L + AVG ++ IA+ + S FVT+ N + + H
Sbjct: 199 NQVEILGKINGAVG-------NYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH 251
Query: 231 DAFVETSGALNTVAASLMKIANDVR----LLGSGPRCGLGELILPENEPGSSIMPGKVNP 286
D E + L+ DV L + GE+ GSS P KVNP
Sbjct: 252 DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEI-------GSSTXPHKVNP 304
Query: 287 TQCE 290
E
Sbjct: 305 IDFE 308
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 26/251 (10%)
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQS+ + R E++G G+ H RS++ V + M+ + +
Sbjct: 82 TQSDEDIQTANERRLKELIGDIAGKL------HTGRSRNEQ----VVTDLKLFMKNSLSI 131
Query: 120 IPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 177
I L+++ + ++E D++ G TH Q A P+ Q + + +R+
Sbjct: 132 ISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEV 190
Query: 178 LPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 236
R+ L G G G L+ D ++ + E S+ N +A++ D VE
Sbjct: 191 KKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAISERDFVVEF 242
Query: 237 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMV 295
+ L K+A D+ + + G L L + GSS+MP K NP E +
Sbjct: 243 LSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPDSLELIRSK 299
Query: 296 CAQVIGNHVAI 306
+V G +I
Sbjct: 300 SGRVFGRLASI 310
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 106/261 (40%), Gaps = 32/261 (12%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + N R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDINTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEP---GSSIMPGKVN 285
D VE + L K+A D+ ++ S G L +++ GSS+MP K N
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDL-IIYSTSEFGF----LTDSDAFSTGSSLMPQKKN 291
Query: 286 PTQCEALTMVCAQVIGNHVAI 306
P E + +V G +I
Sbjct: 292 PDSLELIRSKAGRVFGRLASI 312
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ H RS++ V +
Sbjct: 74 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSRNEQ----VVTDLKL 123
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 124 FMKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 182
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 183 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 234
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 235 ERDFVVEFLSVATLLLIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 291
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 292 SLELIRSKAGRVFGRLASI 310
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 28/259 (10%)
Query: 54 WQTGSG--TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G TQS+ + + R E++G G+ +N +S N+ T + +
Sbjct: 73 WSKGVFVVTQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNEQVVTDLKLF- 123
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 124 -MKNSLSVISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 181
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + + S+ N +A++
Sbjct: 182 DSERLGEVKRRINVLPLGSGALAGNPLD----IDREMLRSELDFASISL----NSMDAIS 233
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 234 ERDFVVEFLSVATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 290
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 291 SLELIRSKAGRVFGRLASI 309
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G TH Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTHLQKAQPIRWSQFLLSHAVALTR 184
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + G+S+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGASLMPQKKNPD 293
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G +H Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYSHLQKAQPIRWSQFLLSHAVALTR 184
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ H RS+ ND T + +
Sbjct: 76 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGKL------HTGRSR--NDQVVTDLKLF- 126
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G H Q A P+ Q + +
Sbjct: 127 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYDHLQKAQPIRWSQFLLSHAVALTR 184
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 185 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 236
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 237 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 293
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 294 SLELIRSKAGRVFGRLASI 312
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 28/259 (10%)
Query: 54 WQTGSGT--QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAA 111
W G QS+ + + R E++G G+ +N +S ND T + +
Sbjct: 58 WSKGVFVVKQSDEDIHTANERRLKELIGDIAGK--------LNTGRSRNDQVVTDLKLF- 108
Query: 112 AMETNSRLIPN--LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKY 169
M+ + +I L+++ + ++E D++ G T+ Q A P+ Q + +
Sbjct: 109 -MKNSLSIISTHLLQLIKTLVERAAIEI-DVILPGYTNLQKAQPIRWSQFLLSHAVALTR 166
Query: 170 GIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA 228
+R+ R+ L G G G L+ D ++ + E S+ N +A++
Sbjct: 167 DSERLGEVKKRINVLPLGSGALAGNPLD----IDREMLRSELEFASISL----NSMDAIS 218
Query: 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPT 287
D VE + L K+A D+ + + G L L + GSS+MP K NP
Sbjct: 219 ERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE---FGFLTLSDAFSTGSSLMPQKKNPD 275
Query: 288 QCEALTMVCAQVIGNHVAI 306
E + +V G +I
Sbjct: 276 SLELIRSKSGRVFGRLASI 294
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Adenylosuccinate Lyase
Length = 478
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/278 (18%), Positives = 114/278 (41%), Gaps = 36/278 (12%)
Query: 109 IAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG----------- 157
+ A ++ ++ + + L + S++ K++V +GRTH Q A+ +T+G
Sbjct: 117 LIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELL 176
Query: 158 ---QEFSGYTTQVKY-GIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET 213
Q S + + ++ GI L G + L+ ++ + A +
Sbjct: 177 XAFQSLSEFRDKXRFRGIKGATGTQDSFLTLFAGDESKVEALD-------ELVTKKANFS 229
Query: 214 SLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP-- 271
+ +T + + F +L+ + A+ K+ D+R+L + GEL+ P
Sbjct: 230 NRFLITGQTYSRQQDSQLVF-----SLSLLGAAAKKVCTDIRVLQA-----FGELLEPFE 279
Query: 272 ENEPGSSIMPGKVNPTQCEALTMVCAQVIGN-HVAITVGGSNGHFELNVFKPMIASGLLH 330
+++ GSS P K NP + E + ++I A+T+ G E + L+
Sbjct: 280 KDQIGSSAXPYKKNPXKSERCCALSRKLINAPQEALTILADQG-LERTLDDSAGRRXLIP 338
Query: 331 SLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV 368
+ L +A + +N G+ + + K++ + + +
Sbjct: 339 DVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFL 376
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEA 291
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE- 305
Query: 292 LTMVCAQVIGNHVAITV 308
C + H+ V
Sbjct: 306 ----CCCSLARHLMTLV 318
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 290
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 252 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 305
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Legionella Pneumophila
Length = 459
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 139 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI-CCLPRMYQLAQGGTAVGTGLNT 197
D+ + RTH Q ATP T G+E + ++K ++ +P + A G
Sbjct: 166 DVAXLSRTHGQPATPTTXGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYP 225
Query: 198 KKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR-- 255
+ + A+ V L F + E HD E S + L+ D+
Sbjct: 226 EVDWRKHCANFVT-SLGLSFNAYTTQIE---PHDGIAEVSQIXVRINNILLDYTQDIWSY 281
Query: 256 -LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCE 290
LG + + E E GSS P KVNP E
Sbjct: 282 ISLGYFKQKTIAE------EVGSSTXPHKVNPIDFE 311
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 290
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCE 290
+E L ++ AS+ KI D+RLL + L E+ P + + GSS MP K NP + E
Sbjct: 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSE 324
>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
From Escherichia Coli
Length = 346
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 153 PLTLGQEFSGYTTQVKYGIDRV-----ICCLPRM 181
P+TLG EFSGY V G+D + + C+P +
Sbjct: 54 PITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLL 87
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 26/270 (9%)
Query: 33 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 92
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 93 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 152
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 153 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 212
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 213 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 272
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 273 NEPGSSIMPGKVNPTQCEALTMVCAQVIGN 302
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPRKKNPDSLELIRSKAGRVFGR 306
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 26/270 (9%)
Query: 33 IMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDH 92
I+ +VAE F L S + ANE R E++G G+ H
Sbjct: 63 ILHGLDKVAEEWAQGTFKL-----NSNDEDIHTANE---RRLKELIGATAGKL------H 108
Query: 93 VNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 152
RS+ ND T + + +T S L L L ++ ++ +D++ G TH Q A
Sbjct: 109 TGRSR--NDQVVTDLRLWMR-QTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 165
Query: 153 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEE 212
P+ + + +R++ R+ L G A+ G D ++ A E
Sbjct: 166 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIA---GNPLGVDRELLRA---E 219
Query: 213 TSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE 272
+ +T N +A + D E + L ++A D+ L + + +
Sbjct: 220 LNFGAITL-NSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQ--LSDA 276
Query: 273 NEPGSSIMPGKVNPTQCEALTMVCAQVIGN 302
GSS+MP K NP E + +V G
Sbjct: 277 YSTGSSLMPQKKNPDSLELIRSKAGRVFGR 306
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 230 HDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQC 289
D E + L+ V +L K D+ L+ +G I GSS MP K NP
Sbjct: 231 RDGIAEFANLLSLVTGTLGKFGQDIALMAE-----IGSEIRLSGGGGSSAMPHKQNPVNA 285
Query: 290 EALTMVC 296
E L +
Sbjct: 286 ETLVTLA 292
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 49 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHP 89
+PLVV+ G+G + N +V NR A + R ++VHP
Sbjct: 174 YPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPR-YQVVHP 213
>pdb|1JLH|A Chain A, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|B Chain B, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|C Chain C, Human Glucose-6-Phosphate Isomerase
pdb|1JLH|D Chain D, Human Glucose-6-Phosphate Isomerase
Length = 558
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 302 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|1IRI|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1IRI|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
Complexed With An Inhibitor
pdb|1JIQ|A Chain A, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|B Chain B, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|C Chain C, Crystal Structure Of Human Autocrine Motility Factor
pdb|1JIQ|D Chain D, Crystal Structure Of Human Autocrine Motility Factor
pdb|1NUH|A Chain A, The Crystal Structure Of Human Phosphoglucose Isomerase
Complexed With 5-Phosphoarabinonate
Length = 558
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 302 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 38 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 84
>pdb|1IAT|A Chain A, Crystal Structure Of Human Phosphoglucose
IsomeraseNEUROLEUKINAUTOCRINE MOTILITY FACTORMATURATION
FACTOR
Length = 557
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 302 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
NH ++T+ ++GH ++ K ++ + +R+L D + S RG++A RER+
Sbjct: 37 NHFSLTLNTNHGHILVDYSKNLVTEDV---MRMLVDLAKS------RGVEAARERM 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,058,256
Number of Sequences: 62578
Number of extensions: 470367
Number of successful extensions: 1179
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 78
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)