Query 014483
Match_columns 423
No_of_seqs 125 out of 1183
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gtd_A Fumarase C, fumarate hy 100.0 2E-100 6E-105 781.1 44.6 420 1-420 61-482 (482)
2 3e04_A Fumarase, fumarate hydr 100.0 5E-100 2E-104 778.2 43.2 422 1-422 68-490 (490)
3 3r6q_A Aspartase; aspartate am 100.0 8.8E-99 3E-103 771.0 42.2 421 1-422 41-463 (468)
4 1yfm_A Fumarase, YFUM; lyase, 100.0 1.2E-97 4E-102 765.4 43.6 420 1-422 66-488 (488)
5 3ocf_A Fumarate lyase:delta cr 100.0 8.9E-98 3E-102 763.0 42.4 414 2-417 62-477 (478)
6 1fur_A Fumarase C, FUMC; hydro 100.0 2.1E-97 7E-102 762.7 45.3 421 1-422 40-463 (467)
7 4adm_A Fumarase C, fumarate hy 100.0 2.5E-97 8E-102 762.7 42.7 416 1-422 68-489 (495)
8 1jsw_A L-aspartase, L-aspartat 100.0 1.1E-96 4E-101 760.1 43.1 419 2-422 44-466 (478)
9 1vdk_A Fumarase C, fumarate hy 100.0 7E-97 2E-101 759.3 39.5 419 2-422 42-463 (466)
10 4hgv_A Fumarase C, fumarate hy 100.0 3.8E-96 1E-100 755.5 44.2 422 1-422 72-495 (495)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 8.1E-81 2.8E-85 640.0 35.1 394 2-422 23-438 (454)
12 3c8t_A Fumarate lyase; structu 100.0 9.7E-81 3.3E-85 638.5 34.5 391 2-422 23-432 (451)
13 2pfm_A Adenylosuccinate lyase; 100.0 2.6E-80 9E-85 633.7 36.4 387 2-422 25-432 (444)
14 1c3c_A Protein (adenylosuccina 100.0 2.2E-80 7.4E-85 632.6 34.4 385 2-421 15-419 (429)
15 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 3.1E-80 1.1E-84 635.0 33.1 393 2-422 21-434 (450)
16 2e9f_A Argininosuccinate lyase 100.0 4.6E-79 1.6E-83 626.9 29.8 389 2-422 28-437 (462)
17 1k7w_A Delta 2 crystallin; eye 100.0 2.4E-79 8.4E-84 629.9 27.6 388 2-422 33-439 (468)
18 1tj7_A Argininosuccinate lyase 100.0 8.9E-78 3E-82 616.6 31.3 391 2-422 26-434 (457)
19 1dof_A Adenylosuccinate lyase; 100.0 3.7E-76 1.3E-80 596.1 33.7 361 2-401 21-397 (403)
20 4eei_A Adenylosuccinate lyase; 100.0 5.1E-75 1.8E-79 592.3 30.1 384 2-421 16-421 (438)
21 2ptr_A Adenylosuccinate lyase; 100.0 8.8E-75 3E-79 595.6 26.6 396 2-422 29-448 (462)
22 1yis_A Adenylosuccinate lyase; 100.0 4.5E-73 1.5E-77 585.6 29.9 392 2-421 27-446 (478)
23 2j91_A Adenylosuccinate lyase; 100.0 2.4E-72 8.2E-77 581.7 31.8 393 2-422 54-475 (503)
24 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 3.5E-71 1.2E-75 551.1 24.7 329 2-360 26-355 (359)
25 2qga_B Adenylosuccinate lyase; 100.0 2.4E-69 8.1E-74 555.7 21.8 391 2-421 28-449 (465)
26 3bhg_A Adenylosuccinate lyase; 100.0 2.5E-68 8.6E-73 547.2 27.5 388 2-421 32-450 (459)
27 1fgl_B HIV-1 GAG protein; cycl 30.9 15 0.00052 21.3 0.7 14 145-158 2-15 (26)
No 1
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=1.6e-100 Score=781.13 Aligned_cols=420 Identities=65% Similarity=0.993 Sum_probs=404.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
+|+++|++|+.||+|+|.++.+.| ||++.+++|.++|++|.++..+++||++.+|+|++|+.|||+||||++++.+++|
T Consensus 61 ~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G 140 (482)
T 3gtd_A 61 MPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELT 140 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhC
Confidence 589999999999999999999999 9999999999999999998888999999999999999999999999999999999
Q ss_pred ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
.+.|+|. +|+++|||+||||||+++|+++|++++++.+.|.+.|..|+++|.++|++|+|++||||||+|+||||||||
T Consensus 141 ~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~ 220 (482)
T 3gtd_A 141 GKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQ 220 (482)
T ss_dssp SCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHH
T ss_pred cccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHH
Confidence 8888874 799999999999999999999999987765689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
||++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||+++++++
T Consensus 221 ~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~ 300 (482)
T 3gtd_A 221 EFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSG 300 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999998778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+|+.++++|+|||+||++|+|+||+||||+.+|++++|||||||||||+.+|.++++|++++|+.+++.....++++|++
T Consensus 301 ~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln 380 (482)
T 3gtd_A 301 TLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELN 380 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999888889999999
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA 398 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~ 398 (423)
.++|++.|+++++++++.+++..++..|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++
T Consensus 381 ~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~ 460 (482)
T 3gtd_A 381 VFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAA 460 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHhhccCcccccC
Q 014483 399 LKLGVLNSEEFDNLVVPEKMIG 420 (423)
Q Consensus 399 ~~~~~l~~~~l~~~~dp~~~~g 420 (423)
.+.+.+++++++++|||.+++|
T Consensus 461 ~~~~~ls~eeld~~ldP~~~~g 482 (482)
T 3gtd_A 461 KKLNFLSEEEFDKIVVPEKMIS 482 (482)
T ss_dssp HHTTSCCHHHHHHHHSCC----
T ss_pred HHcCCCCHHHHHHHcCHHHhcC
Confidence 9999999999999999999987
No 2
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-100 Score=778.17 Aligned_cols=422 Identities=73% Similarity=1.126 Sum_probs=403.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~gip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
||+.+|+++..|++|+|.++.+.|||++.+++|.++|++|.++..+++||++.+|+|++|+.|||+||||++++.+++|.
T Consensus 68 ~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~ 147 (490)
T 3e04_A 68 MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGG 147 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHHHHhCc
Confidence 58999999999999999999999999999999999999999988888999999999999999999999999999999998
Q ss_pred cCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHH
Q 014483 81 KRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 159 (423)
Q Consensus 81 ~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~ 159 (423)
+.|+|. +||++|||+||||||+++|+++|++++++.+.|.+.|..|+++|.++|++|+|++||||||+|+|||||||||
T Consensus 148 ~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~ 227 (490)
T 3e04_A 148 ELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQE 227 (490)
T ss_dssp CTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHH
T ss_pred ccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHH
Confidence 889884 7999999999999999999999999877656899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHH
Q 014483 160 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239 (423)
Q Consensus 160 ~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~ 239 (423)
|++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||++++++++
T Consensus 228 ~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~ 307 (490)
T 3e04_A 228 FSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGA 307 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999986789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccccc
Q 014483 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 319 (423)
Q Consensus 240 l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~~ 319 (423)
|+.++++|+|||+||++|+|+||+||||+.+|+.++|||||||||||+.+|.++++|++++|+.+++.....++++|++.
T Consensus 308 L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~~g~~eln~ 387 (490)
T 3e04_A 308 MNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNV 387 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999889999999999999999999999999999999998888899999999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHHH
Q 014483 320 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL 399 (423)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~~ 399 (423)
++|++.|+++++++++.+++..++..|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++.
T Consensus 388 ~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~iak~A~~~g~~l~e~~~ 467 (490)
T 3e04_A 388 FKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAI 467 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhchHHHHHhhhHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHhhccCcccccCCC
Q 014483 400 KLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 400 ~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.+.+++++++++|||.+++|++
T Consensus 468 ~~~~ls~eeld~~ldP~~~~g~~ 490 (490)
T 3e04_A 468 ELGYLTAEQFDEWVKPKDMLGPK 490 (490)
T ss_dssp HHTSCCHHHHHHHCCGGGSSCC-
T ss_pred HcCCCCHHHHHHHcCHHHhcCCC
Confidence 99999999999999999999985
No 3
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=8.8e-99 Score=771.03 Aligned_cols=421 Identities=42% Similarity=0.707 Sum_probs=404.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
||+++|++|+.||+|+|.++.+.| ||++++++|.++|++|.++..+++|+++.+++++++++|+++|+||++++.+++|
T Consensus 41 ~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevia~~~~e~~G 120 (468)
T 3r6q_A 41 IHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 120 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCccccCCCccHHhccccccccccHHHHHHHHHHHHhc
Confidence 589999999999999999999999 9999999999999999988778899999999999999999999999999999999
Q ss_pred ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
++.|+|. +|+++|||+|+||||+++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+||||||||
T Consensus 121 ~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~-l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~ 199 (468)
T 3r6q_A 121 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSL-LNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQ 199 (468)
T ss_dssp CCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred cccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHH
Confidence 8778753 9999999999999999999999999765 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
||++|+++|.|+++||.+++++++.+||||||+||++++++++...+.+++++.|||+.++.+|++||+++||+++++++
T Consensus 200 ~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~ 279 (468)
T 3r6q_A 200 EFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSS 279 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTCCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCCChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+|+.++++|+|||+||++|+|+||+|||||.+|+.++|||||||||||+.+|.++++|++++|+.++++.+..++++|++
T Consensus 280 ~l~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln 359 (468)
T 3r6q_A 280 ALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999888888999999
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA 398 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~ 398 (423)
.+.+.+.+++++++..+.+++..+.+.|+++|+||++||++|+..+++++|+|++++||+.|++++++|.++|++++|++
T Consensus 360 ~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~lgy~~a~~ia~~a~~~g~~l~e~~ 439 (468)
T 3r6q_A 360 VMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELC 439 (468)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCchHHhcchhhHHHHHHHHHHHHHHhCCCHHHHH
Confidence 88888888899999999999999976899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHhhccCcccccCCC
Q 014483 399 LKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 399 ~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
.+++.+++++++++|||.+++++.
T Consensus 440 ~~~~~ls~eel~~~ldp~~~~~~~ 463 (468)
T 3r6q_A 440 IKYGVLTEEQLNEILNPYEMIHPG 463 (468)
T ss_dssp HHHTSSCHHHHHHHSCHHHHTSCC
T ss_pred HHcCCCCHHHHHHHcCHHHhcCCC
Confidence 999999999999999999999863
No 4
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=1.2e-97 Score=765.43 Aligned_cols=420 Identities=70% Similarity=1.033 Sum_probs=396.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
+|+++|++|++||+|+|.++.+.| ||++++++|.++|++|.++..+++|+++++++++++++|||+|+||++++.+.+|
T Consensus 66 ~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG 145 (488)
T 1yfm_A 66 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 145 (488)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhC
Confidence 578999999999999999999999 9999999999999999988777889999999999999999999999998889999
Q ss_pred ccCC-CcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChh
Q 014483 80 HKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157 (423)
Q Consensus 80 ~~~g-~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~-~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G 157 (423)
++.| ++ +||++|||+|+||||+++|+++|++++. +. .|.+.|..|+++|.++|++|+|++||||||+|+|||||||
T Consensus 146 ~~~g~~~-vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~-l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G 223 (488)
T 1yfm_A 146 GKIGSKQ-VHPNNHCNQSQSSNDTFPTVMHIAASLQ-IQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLG 223 (488)
T ss_dssp --------CCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHH
T ss_pred ccccCCc-cCcccCcCCCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHH
Confidence 7777 88 9999999999999999999999998765 66 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHH
Q 014483 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237 (423)
Q Consensus 158 ~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~ 237 (423)
|||++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||++++++
T Consensus 224 ~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~ 303 (488)
T 1yfm_A 224 QEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECS 303 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCChhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999768999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 317 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~ 317 (423)
++|+.++++|+|||+||++|+|+||+||||+.+|++++|||||||||||+.+|.++++|+++.|+.++++.+..++++|+
T Consensus 304 ~~L~~la~~L~Kia~DlrllsS~pr~g~gei~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~el 383 (488)
T 1yfm_A 304 GALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFEL 383 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCceeEECCCCCCcCCCcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999888899999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHH
Q 014483 318 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDA 397 (423)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~ 397 (423)
+...|.+.+++++++..+.+++..+...|+++|+||++||++++..+++++++|++++||+.|+++++.|.++|++++|+
T Consensus 384 n~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~lg~~~a~~i~~~a~~~g~~l~e~ 463 (488)
T 1yfm_A 384 NVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKES 463 (488)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHHHHHHHhccHHHHHHHHHHHHHhCCCHHHH
Confidence 99999888999999999999999997789999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHhhccCcccccCCC
Q 014483 398 ALKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 398 ~~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.+++.++++++++++||..++|++
T Consensus 464 ~~~~~~l~~eel~~~ldp~~~~~~~ 488 (488)
T 1yfm_A 464 ALELGVLTEKEFDEWVVPEHMLGPK 488 (488)
T ss_dssp HHHTTSCCHHHHHHHCCGGGCC---
T ss_pred HHhcCCCCHHHHHHhcCHHHhcCCC
Confidence 9999999999999999999999974
No 5
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=8.9e-98 Score=762.99 Aligned_cols=414 Identities=41% Similarity=0.646 Sum_probs=389.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
++++|++|+.||+|+|.+|.+.| ||++.+++|.++|++|.++..+++||++.+++++++++|+|+|+||++++.+++|+
T Consensus 62 ~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~e~~G~ 141 (478)
T 3ocf_A 62 IPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLGR 141 (478)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHHHHhch
Confidence 48999999999999999999999 99999999999999999887788999999999999999999999999999999998
Q ss_pred cCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHH
Q 014483 81 KRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 159 (423)
Q Consensus 81 ~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~ 159 (423)
+.|+|. +||++|||+|+||||+++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+|||||||||
T Consensus 142 ~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~-l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~ 220 (478)
T 3ocf_A 142 PRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLS-QNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQE 220 (478)
T ss_dssp CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHH
T ss_pred hcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHH
Confidence 888764 9999999999999999999999999765 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHH
Q 014483 160 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239 (423)
Q Consensus 160 ~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~ 239 (423)
|++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||++++++++
T Consensus 221 ~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~ 300 (478)
T 3ocf_A 221 FEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGI 300 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGEECTTC-----------CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeCCCcCCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999977889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccccc
Q 014483 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV 319 (423)
Q Consensus 240 l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~~ 319 (423)
|+.++++|+|||+||++|+|+||+||||+.+|+.++|||||||||||+.+|.++++|++++|+.++++....+++++++.
T Consensus 301 L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~ 380 (478)
T 3ocf_A 301 LRRIAVKLSKIANDLRLLSSGPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNA 380 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHTCBSSSSCCCEECCCCSCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceeEEECCCCCCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcc
Confidence 99999999999999999999999999999999889999999999999999999999999999999998888899999999
Q ss_pred chhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHHH
Q 014483 320 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL 399 (423)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~~ 399 (423)
++|.+.+++++++.++.+++..++..|+++|+||++||++|+..+++++|+|++++||+.|++++++|.++|++++|++.
T Consensus 381 ~~p~i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvtaLa~~igy~~a~~ia~~A~~~g~~l~e~~~ 460 (478)
T 3ocf_A 381 FEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVVGYARAAEIAKQALASGQTVMEVAI 460 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCGGGGGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHHHHhCccHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99988899999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHhhccCccc
Q 014483 400 KLGVLNSEEFDNLVVPEK 417 (423)
Q Consensus 400 ~~~~l~~~~l~~~~dp~~ 417 (423)
+.+. ++++++++|||.+
T Consensus 461 ~~~~-s~eel~~~ldp~~ 477 (478)
T 3ocf_A 461 SKGL-DASALTIMLDPLR 477 (478)
T ss_dssp HTTC-CCHHHHHHTCSCC
T ss_pred HcCC-CHHHHHHhcCccc
Confidence 9887 9999999999986
No 6
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=2.1e-97 Score=762.69 Aligned_cols=421 Identities=61% Similarity=0.943 Sum_probs=401.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
+|++++++|++||+|+|.++.+.| ||++++++|.++|++|.++..++.|+++++++++++++|+|+|+||++++.+.+|
T Consensus 40 ~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~g~~~~~~mn~~~via~~a~e~~G 119 (467)
T 1fur_A 40 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLG 119 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccccccccchhhhccccccccccHHHHHHHHHHHHhC
Confidence 588999999999999999999999 9999999999999999987777889999999999999999999999999899999
Q ss_pred ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChh
Q 014483 80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR-LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157 (423)
Q Consensus 80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~-l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G 157 (423)
++.|+|. +||++|||+|+||||+++|+++|++++. +.. |.+.|..|+++|.++|++|+|++||||||+|+|||||||
T Consensus 120 ~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~-l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G 198 (467)
T 1fur_A 120 GVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLA-LRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLG 198 (467)
T ss_dssp CCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHH
T ss_pred cccccccccCchhhcccCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHH
Confidence 7788764 9999999999999999999999999765 556 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHH
Q 014483 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237 (423)
Q Consensus 158 ~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~ 237 (423)
|||++|+++|.|+++||.+++++++.+||||||+||++++++.|+..+.+++++.|||+.++.+|++||+++||++++++
T Consensus 199 ~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~ 278 (467)
T 1fur_A 199 QEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAH 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 317 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~ 317 (423)
++++.++++|+|||+||++|+|+||+||||+.+|++++|||||||||||+.+|.++++|+++.|++.+++.....+++|+
T Consensus 279 ~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~ 358 (467)
T 1fur_A 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFEL 358 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEECCCCSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999998888899999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHH
Q 014483 318 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDA 397 (423)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~ 397 (423)
+...|.+.+.+++++..+.+++..+...|+++|+||++||++|+..+++++++|++++||+.++++++.|.++|++++|+
T Consensus 359 ~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~~~~a~~~g~~l~e~ 438 (467)
T 1fur_A 359 NVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAA 438 (467)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCccHHHHhHhhccHHHHHHHHHHHHHcCCCHHHH
Confidence 99999988999999999999999997789999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHhhccCcccccCCC
Q 014483 398 ALKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 398 ~~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.+++.++++++++++||..++|++
T Consensus 439 ~~~~~~l~~~e~~~~ldp~~~~~~~ 463 (467)
T 1fur_A 439 ALALGYLSEAEFDSWVRPEQMVGSM 463 (467)
T ss_dssp HHHTTSSCHHHHHHHCCGGGC----
T ss_pred HHhcCCCCHHHHHHhcCHHHHhCcc
Confidence 9999999999999999999999974
No 7
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=2.5e-97 Score=762.67 Aligned_cols=416 Identities=52% Similarity=0.802 Sum_probs=390.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
+|+++|++|+.||+|+|.+|.+.| ||++++++|.++|++|.++..+++||++++++++++++|+|+|++|.++. .+|
T Consensus 68 ~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra--~lG 145 (495)
T 4adm_A 68 LERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIA--AKG 145 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCcccCCCCcchhhccccccccccHHHHHHHHH--HhC
Confidence 589999999999999999999999 99999999999999999888888999999999999999999999998755 667
Q ss_pred ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHH
Q 014483 80 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 159 (423)
Q Consensus 80 ~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~ 159 (423)
|+| +||++|||+|+||||+++|+++|++++.+.+.|.+.|..|+++|.++|++|+|++||||||+|+|||||||||
T Consensus 146 ---G~~-vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~ 221 (495)
T 4adm_A 146 ---GVT-LHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQE 221 (495)
T ss_dssp ---TCC-CCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHH
T ss_pred ---CCc-cCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHH
Confidence 788 9999999999999999999999999776545799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCC-CCCcCCchhHHhhhchHHHHHHH
Q 014483 160 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL-PFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 160 ~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl-~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
|++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.||| +..+.+|++||+++||+++++++
T Consensus 222 ~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~ 301 (495)
T 4adm_A 222 FSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASG 301 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccCChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 66688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+|+.++++|+|||+||++|+|+||+|||||.+|+.++|||||||||||+.+|.++++|++++|+.+++.....+++++++
T Consensus 302 ~L~~la~~L~Kia~DlrllsSgpr~e~gei~lp~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln 381 (495)
T 4adm_A 302 ALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELN 381 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBSTTSCCCEECCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999888889999999
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA 398 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~ 398 (423)
.+++.+.+++++++..+.+++..++..|+++|+||++||++|+..+++++|+|++++||+.|+++|++|.++|++|+|++
T Consensus 382 ~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~igy~~a~~ia~~a~~~g~~l~e~~ 461 (495)
T 4adm_A 382 VYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAIGYEEAAAVAKQALKERKTIRQTV 461 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCGGGGGGGHHHHCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhccccHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHH
Confidence 99998889999999999999999977899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCC----CCHHHHhhccCcccccCCC
Q 014483 399 LKLGV----LNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 399 ~~~~~----l~~~~l~~~~dp~~~~g~~ 422 (423)
.+++. +++++++++|||.+++|+.
T Consensus 462 ~~~~~~~~~ls~eel~~~ldp~~~~~~~ 489 (495)
T 4adm_A 462 IDRGLIGDRLSIEDLDRRLDVLAMAKAE 489 (495)
T ss_dssp HHTTCCBTTBCHHHHHHHTCHHHHTTCC
T ss_pred HhCcccccCCCHHHHHHHcCHHHhcCCc
Confidence 98865 9999999999999999975
No 8
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1.1e-96 Score=760.11 Aligned_cols=419 Identities=40% Similarity=0.650 Sum_probs=397.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH-ccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
|+++|++|++||.|+|.++++.| ||++++++|.++|++|. ++...+.|+++++++++++|+|+|+|+||++++++++|
T Consensus 44 ~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g 123 (478)
T 1jsw_A 44 IPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMG 123 (478)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcC
Confidence 89999999999999999999999 99999999999999999 88778899999999999999999999999999999999
Q ss_pred ccCCC--cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChh
Q 014483 80 HKRGE--KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157 (423)
Q Consensus 80 ~~~g~--~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G 157 (423)
++.|+ + +||++|||+|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+|||||||
T Consensus 124 ~~~g~~~~-lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~-l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G 201 (478)
T 1jsw_A 124 HQKGEYQY-LNPNDHVNKCQSTNDAYPTGFRIAVYSS-LIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLG 201 (478)
T ss_dssp SCCTTSCS-SCCCCCCSCSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHH
T ss_pred cccccccc-ccccccccCCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHH
Confidence 77776 7 9999999999999999999999999776 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHH
Q 014483 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237 (423)
Q Consensus 158 ~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~ 237 (423)
|||++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||++++++
T Consensus 202 ~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~ 281 (478)
T 1jsw_A 202 QEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVH 281 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCccCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999768999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 317 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~ 317 (423)
++|+.++++|+|||+||++|+|+||+|||||.+|++++|||||||||||+.+|.++++|+++.|++.+++.....+++|+
T Consensus 282 ~~l~~la~~L~kia~Dl~ll~S~pr~e~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~e~ 361 (478)
T 1jsw_A 282 GALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQL 361 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCceeEECCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhccchhh
Confidence 99999999999999999999999999999999999899999999999999999999999999999999988888889999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHH
Q 014483 318 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDA 397 (423)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~ 397 (423)
+...+.+.+++++++..+..++..+...|+++|+||++||++|++.+++++++|++++||+.++++++.|.++|++++|+
T Consensus 362 ~~~~p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~ 441 (478)
T 1jsw_A 362 NVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREV 441 (478)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHHHHHHHHHhCchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHH
Confidence 98888778999999999999999987679999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHhhccCcccccCCC
Q 014483 398 ALKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 398 ~~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.+++.+++++++++|||.+|+|++
T Consensus 442 ~~~~~~l~~~~~~~~ldp~~~~~~~ 466 (478)
T 1jsw_A 442 VLERGLLTEAELDDIFSVQNLMHPA 466 (478)
T ss_dssp HHHHTSSCSHHHHTSCCC-------
T ss_pred HHhcCCCCHHHHHHhCCHHHHhCCC
Confidence 9988899999999999999999874
No 9
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=7e-97 Score=759.31 Aligned_cols=419 Identities=56% Similarity=0.851 Sum_probs=401.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
|++++++|++||+|+|.++.+.| ||++++++|.++|++|.++..++.|+++++++++++|+|+|+|+||++++++.+|+
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~~q~~~~~~~~mn~~~via~~a~e~~g~ 121 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGK 121 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccccCCCchhhhccccccccccHHHHHHHHHHHHhCc
Confidence 89999999999999999999999 99999999999999999877777899999999999999999999999998999997
Q ss_pred cCC-CcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 81 KRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 81 ~~g-~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~-~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
+.| ++ +||++|||+|+||||+++|+++|++++. +. .|.+.|..|+++|.++|++|+|++||||||+|+||||||||
T Consensus 122 ~~g~~~-lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~-l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~ 199 (466)
T 1vdk_A 122 PLGSKY-AHPNDHVNRGQSSNDTFPTAMYVAVALA-LHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQ 199 (466)
T ss_dssp CTTSCS-SCCCCCCTTTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred cccccc-cccccCcCCCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHH
Confidence 788 88 9999999999999999999999998665 55 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
||++|+++|.|+++||.+++++++.+||||||+||+++++++|+.++.+++++.|||+.++.+|++|++++||+++++++
T Consensus 200 ~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~ 279 (466)
T 1vdk_A 200 EIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMG 279 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCCchHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999997679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+++.++++|+|||+||++|+|+||+|||||.+|++++|||||||||||+.+|.++++|+++.|++.+++....++++|++
T Consensus 280 ~l~~la~~L~kia~Dl~ll~S~~r~~~gei~lp~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~ 359 (466)
T 1vdk_A 280 AIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLN 359 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCceeEECCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhh
Confidence 99999999999999999999999999999999998899999999999999999999999999999999998888899999
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA 398 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~ 398 (423)
...|.+.+++++++..+.+++..+...|+++|+||++||++|+..+++++++|++++||+.++++|++|.++|++++|++
T Consensus 360 ~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~lg~~~a~~~v~~a~~~g~~l~e~~ 439 (466)
T 1vdk_A 360 VYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAA 439 (466)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 88998888999999999999999877799999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHhhccCcccccCCC
Q 014483 399 LKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 399 ~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
.+++.+++++++++|||.+++|++
T Consensus 440 ~~~~~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 440 LELGYLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred HhcCCCCHHHHHHHcCHHHhcCCC
Confidence 999999999999999999999975
No 10
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.8e-96 Score=755.48 Aligned_cols=422 Identities=64% Similarity=0.986 Sum_probs=404.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
||+++|++++.||+|+|++|.++| ||++.+++|.++|++|.++.++++||++.+|+|++++.|||+||||.+++.+.+|
T Consensus 72 ~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a~e~lg 151 (495)
T 4hgv_A 72 QPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKAAQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRAIELLG 151 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCchhhccchhhhhhccccccCcchhHHHHHHHHHHcC
Confidence 689999999999999999999999 9999999999999999999899999999999999999999999999999999999
Q ss_pred ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
.+.|.|. +|+++|||+|+||||+++|+++|++++++.+.|.+.|..|+++|.++|++|+|++||||||+|+|+|||||+
T Consensus 152 ~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~ 231 (495)
T 4hgv_A 152 GVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQ 231 (495)
T ss_dssp CCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHH
T ss_pred cccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHH
Confidence 8888765 999999999999999999999999887777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
+|++|+++|.|+++||.++++++..+++||+|+||+.+.+++++..+.+++++.+||...+.+|+++|+++||+++++++
T Consensus 232 ~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~ 311 (495)
T 4hgv_A 232 EFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHG 311 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcccCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999998888888899999999999998788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+|+.++++|+|||+||++|+|+|+.||+|+.+|++++||||||||+||+.+|.++++|+++.|+.+++......+++|++
T Consensus 312 ~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n 391 (495)
T 4hgv_A 312 AINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELN 391 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCcccccCccccChHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA 398 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~ 398 (423)
...|.+.|.++++++.+.+++..++..|+++|+||+++|+++++.+++++++|++++||+.|++++++|.++|++++|++
T Consensus 392 ~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~lvtaL~~~iGy~~A~~iak~A~~~g~~lre~~ 471 (495)
T 4hgv_A 392 VYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKIGYDNAAKIAKTAHKNGTTLREEA 471 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGTHHHHCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHhcChhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCHHHHhhccCcccccCCC
Q 014483 399 LKLGVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 399 ~~~~~l~~~~l~~~~dp~~~~g~~ 422 (423)
.+.+.++++|++++|||++|+|+.
T Consensus 472 ~~~~~ls~eeld~lldP~~~~gpA 495 (495)
T 4hgv_A 472 VGGGYVTDEEFDAVVRPETMIGPA 495 (495)
T ss_dssp HTTTSSCHHHHHHHCCGGGSSSCC
T ss_pred HHcCCCCHHHHHHhCCHHHhcCCC
Confidence 999999999999999999999973
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=8.1e-81 Score=639.98 Aligned_cols=394 Identities=21% Similarity=0.261 Sum_probs=337.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++|++|.. +|+++.++++.++ +.|+|+.+ .+.+.+
T Consensus 23 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~-----~~~~~~~~~~~~~----~~~dVia~~~~l~e~~ 93 (454)
T 1q5n_A 23 DRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAID-----KIDFDALATATGL----AGNIAIPFVKQLTAIV 93 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTHHH-----HCCHHHHHHHHHH----HSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-----cCCHHHHHHHhhc----cCCcHHHHHHHHHHHh
Confidence 57899999999999999999999 999999999999987752 2555555543332 45555554 557888
Q ss_pred C---ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCC
Q 014483 79 G---HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 155 (423)
Q Consensus 79 g---~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T 155 (423)
| ++.|+| + |+|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|||||||
T Consensus 94 g~~~g~~~~~-v------H~g~SsnD~~~Ta~~L~~r~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T 165 (454)
T 1q5n_A 94 KDADEDAARY-V------HWGATSQDILDTACILQCRDA-LAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPIT 165 (454)
T ss_dssp HTTCTTGGGG-T------TTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEE
T ss_pred ccccCCcccc-c------cCCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCceeeccccCCcCcccH
Confidence 4 244444 4 469999999999999998765 5799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHH
Q 014483 156 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVE 235 (423)
Q Consensus 156 ~G~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e 235 (423)
|||||++|+++|.|+++||.+++++++.+|||| |+||+.+..+ |+..+++++++.|||+.++.+| +.+||++++
T Consensus 166 ~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~LG~~~~~~~~----~~~rD~~~e 239 (454)
T 1q5n_A 166 LGHKLARWASAFKRDLDRINAIKARVLVAQLGG-AVGSLASLQD-QGSIVVEAYAKQLKLGQTACTW----HGERDRIVE 239 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGTT-CHHHHHHHHHHHHTCBCCSSCC----SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-HhhcCccccc-ccHHHHHHHHHHhCcCCCCCCC----ccCcHHHHH
Confidence 999999999999999999999999999999999 8899988755 8889999999999999866554 569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCc
Q 014483 236 TSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNG 313 (423)
Q Consensus 236 ~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~ 313 (423)
++++++.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++++|+++.|++++++.+ ..+
T Consensus 240 ~~~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~ 315 (454)
T 1q5n_A 240 IASVLGIITGNVGKMARDWSLMM---QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQS-MVQ 315 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCC-------------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 99999999999999999999999 57999999996 6899999999999999999999999999999998864 567
Q ss_pred ccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------HhhcccccHHHHHHH----
Q 014483 314 HFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPKIGYDNAAAV---- 383 (423)
Q Consensus 314 ~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~~g~~~a~~~---- 383 (423)
++++|...|.+.|.+++++..+...++..+..|+++|+||++||++|++.+.+++ +.|++++||++||++
T Consensus 316 ~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig~~~A~~iv~~~ 395 (454)
T 1q5n_A 316 EHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAA 395 (454)
T ss_dssp CTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8999999998888888777777777777778999999999999999999777765 678888999999974
Q ss_pred HHHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCCC
Q 014483 384 AKKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 384 ~~~a~~~g~~l~e~~~~~----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
++.|.++|++++|++.++ +.++++++++++||.+|+|+.
T Consensus 396 ~~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~g~a 438 (454)
T 1q5n_A 396 CKTAVAEQKHLKDIISQVDEVKQYFNPSQLDEIFKPESYLGNI 438 (454)
T ss_dssp HHHHHHHTCCHHHHHTTCHHHHTTCCHHHHHHHTCGGGGCTTH
T ss_pred HHHHHHhCCCHHHHHhcchhhhcCCCHHHHHHhCCHHHHcCcH
Confidence 478889999999999887 789999999999999999863
No 12
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=9.7e-81 Score=638.49 Aligned_cols=391 Identities=20% Similarity=0.226 Sum_probs=335.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++|++ +.|+++.++++.++ +.|+|+.+ .+++.+
T Consensus 23 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~-------~~~~~~~~~~~~~~----~~~dVia~~~~l~e~~ 91 (451)
T 3c8t_A 23 AQSFISRCVETEVALARAQARLGIIPEDAAAGITAAART-------FAPEMERLRDDTEI----VGYPILPLVEQLSAHA 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-------CCCCHHHHHHHHHH----HSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhh-------cCCCHHHHHHHhhc----CCCcHHHHHHHHHHHc
Confidence 57899999999999999999999 999999999999986 24555555544333 45555554 557999
Q ss_pred CccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 79 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 79 g~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
|+ .|+| +| +|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+||||||||
T Consensus 92 g~-~g~~-vH------~g~SsnDv~~Ta~~L~lr~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~ 162 (451)
T 3c8t_A 92 GE-AGKY-LH------WGATTQDIMDTATVLQIRDG-LALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGY 162 (451)
T ss_dssp GG-GGGG-SS------SSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred cc-cccc-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCceeecccCCCCceeehHHH
Confidence 84 5777 77 59999999999999998765 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
||++|+++|.|+++||.+++++++.+|||| |+||+.+..+ |+..+++++++.|||+.++.+| +.+||+++++++
T Consensus 163 ~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGT~~~~~~-~~~~~~~~~a~~LGl~~~~~~~----~~~rD~~~e~~~ 236 (451)
T 3c8t_A 163 KAAVWLSAFDRHAARLEEISPRVLVVEFSG-ASGTLASLGT-RGLDVQRELARELNLGVPSITW----HSARDAVAETVQ 236 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCBCCCCC-TTSSCGGGTT-CHHHHHHHHHHHHTCBCCSSCC----SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCch-hhhcCccccc-ccHHHHHHHHHHhCCCCCCCCC----ccCcHHHHHHHH
Confidence 999999999999999999999999999999 8999988765 8889999999999999866554 469999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 316 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e 316 (423)
+++.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++++|+++.|++++++.+ ..++++
T Consensus 237 ~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~e 312 (451)
T 3c8t_A 237 FLALVSGSLGKLAMDISIMM---TTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLDA-MIHDFE 312 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---STTTCCEECC---------------CCHHHHHHHHHHHHHHHHHHHHHHH-TCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHh---CccccccccccccCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhc-Cchhhc
Confidence 99999999999999999999 57999999996 6899999999999999999999999999999998864 567899
Q ss_pred cccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------HhhcccccHHHHHHHH----HH
Q 014483 317 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPKIGYDNAAAVA----KK 386 (423)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~~g~~~a~~~~----~~ 386 (423)
++...|.+.|.+++++..+...++..+..|+++|+||++||++|++.+.+++ +.|++++||++||++| +.
T Consensus 313 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~ig~~~A~~iv~~~~~~ 392 (451)
T 3c8t_A 313 RATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPHTGRKEAHDIVYLGCRR 392 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999988888888777777777777778999999999999999998777765 6778889999999754 78
Q ss_pred HHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCCC
Q 014483 387 AHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 387 a~~~g~~l~e~~~~~----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
|.++|++++|++.++ +.++++++++++||.+|+|+.
T Consensus 393 a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~~ 432 (451)
T 3c8t_A 393 AVEDKTGLFEVLRTMPEVAKPLGEEALRDLTDPRNYLGSA 432 (451)
T ss_dssp HHHTTSCHHHHHTTCHHHHHHHCHHHHHHHTCGGGCCTTH
T ss_pred HHHhCCCHHHHHhcChhhhccCCHHHHHHhCCHHHHhchH
Confidence 889999999999887 578999999999999999863
No 13
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=2.6e-80 Score=633.69 Aligned_cols=387 Identities=20% Similarity=0.179 Sum_probs=343.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++| .|+++.++++.+ .+.|+|+++ .+.+.+
T Consensus 25 d~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~----------~~d~~~i~~~~~----~~~~dVia~~~~l~e~~ 90 (444)
T 2pfm_A 25 EENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA----------SFDIDRIYEIEK----ETRHDVVAFTRAVSETP 90 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC----------CCCHHHHHHHHH----HHCCHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHHhc----cCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999 9999999999986 134444443322 246666655 457888
Q ss_pred C-ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChh
Q 014483 79 G-HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157 (423)
Q Consensus 79 g-~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G 157 (423)
| ++.|+| +| +|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+|||||||
T Consensus 91 g~g~~g~~-vH------~g~SsnDv~~Ta~~L~lr~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G 162 (444)
T 2pfm_A 91 ALGEERKW-VH------YGLTSTDVVDTALSYILKQA-NEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFG 162 (444)
T ss_dssp TCCGGGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHH
T ss_pred CCCccccc-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccceeccHH
Confidence 5 466776 77 59999999999999998765 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHH
Q 014483 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237 (423)
Q Consensus 158 ~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~ 237 (423)
|||++|+++|.|+++||.+++++++.+|||| |+||+.+.+ ..+++++++.|||+.++.+ ||+.+||++++++
T Consensus 163 ~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LGl~~~~~~---d~~~~rD~~~e~~ 234 (444)
T 2pfm_A 163 LKLGLWYEEMKRNVERFKQAANTVRVGKLSG-AVGTYANID----PFVEKYVCENLGLEAAPIS---TQTLQRDRHAHYM 234 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCTTSC----HHHHHHHHHHTTCEECSSC---SSSCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCch-hhccCCcCC----HHHHHHHHHHhCCCCCCCC---cCccCcHHHHHHH
Confidence 9999999999999999999999999999999 899988764 4688899999999975444 5678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 315 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~ 315 (423)
++++.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++++|+++.|++.+++.+. .+++
T Consensus 235 ~~l~~la~~L~kia~Dl~ll~---~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~ 310 (444)
T 2pfm_A 235 STLALIATSIEKMAVEIRGLQ---KSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYENV-PLWH 310 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHTS-CCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cccccccccccccCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhC-cccc
Confidence 999999999999999999999 57999999996 68999999999999999999999999999999988754 6899
Q ss_pred ccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------Hhhccc-ccHHHHHH----HH
Q 014483 316 ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPK-IGYDNAAA----VA 384 (423)
Q Consensus 316 e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~-~g~~~a~~----~~ 384 (423)
++|...|.++|.+++++..+...++..+..|+++|+||++||++|++.+++++ +.|+++ +||++||+ ++
T Consensus 311 erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv~~~~ 390 (444)
T 2pfm_A 311 ERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKA 390 (444)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999899999888777777777778999999999999999998777765 677887 99999995 57
Q ss_pred HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCCC
Q 014483 385 KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 385 ~~a~~~g~~l~e~~~~~----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.|.++|.+++|++.++ +.++++++++++||.+|+|+-
T Consensus 391 ~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a 432 (444)
T 2pfm_A 391 MEAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQHV 432 (444)
T ss_dssp HHHHHHTCCHHHHHHTCHHHHTTSCHHHHHHHTCGGGGGTTH
T ss_pred HHHHHHCCCHHHHHhcchhhhccCCHHHHHHhCCHHHHHhHH
Confidence 78889999999999887 789999999999999999863
No 14
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=2.2e-80 Score=632.58 Aligned_cols=385 Identities=21% Similarity=0.219 Sum_probs=337.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++| .|+++.++++.+ .+.|+|+.+ .+.+.+
T Consensus 15 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~----------~~d~~~i~~~~~----~~~~dVia~~~~l~e~~ 80 (429)
T 1c3c_A 15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNA----------KIDVELFKKIEE----KTNHDVVAFVEGIGSMI 80 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHC----------CCCHHHHHHHHH----HHCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC----------CCCHHHHHHHHh----ccCCChHHHHHHHHHHc
Confidence 57899999999999999999999 9999999999986 134444443322 245666655 558999
Q ss_pred CccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 79 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 79 g~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
|+ .|+| +| +|+||||+++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||
T Consensus 81 g~-~g~~-vH------~g~SsnD~~~Ta~~l~lr~~-~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~ 151 (429)
T 1c3c_A 81 GE-DSRF-FH------YGLTSSDVLDTANSLALVEA-GKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGL 151 (429)
T ss_dssp GG-GGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred Cc-cccc-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCCcHHH
Confidence 84 4777 77 59999999999999999765 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~ 238 (423)
||++|+++|.|+++||.+++++++.+|||| |+||+.+.+ ..+++++++.|||+.++.+ ||+.+||+++++++
T Consensus 152 ~~~~~~~~l~r~~~rL~~~~~~~~~~~lGg-AvGt~~~~~----~~~~~~~a~~LGl~~~~~~---d~~~~rD~~~e~~~ 223 (429)
T 1c3c_A 152 KVLGWYSEMKRNVQRLERAIEEVSYGKISG-AVGNYANVP----PEVEEKALSYLGLKPEPVS---TQVVPRDRHAFYLS 223 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEECCCC-TTSSCSSSC----HHHHHHHHHHTTCEECSSC---SSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCch-hhcCCccCC----HHHHHHHHHHcCCCCCCCC---cCccCcHHHHHHHH
Confidence 999999999999999999999999999999 899988764 4688899999999975443 56789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccc
Q 014483 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFE 316 (423)
Q Consensus 239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e 316 (423)
+++.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++++|+++.|++.+++.+. .++++
T Consensus 224 ~l~~~a~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~~e 299 (429)
T 1c3c_A 224 TLAIVAAGIERIAVEIRHLQ---RTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENI-ALWHE 299 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---STTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHHTT-CCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcC-Ccccc
Confidence 99999999999999999999 57999999996 68999999999999999999999999999999987754 68999
Q ss_pred cccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------Hhhccc-ccHHHHHH----HHH
Q 014483 317 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPK-IGYDNAAA----VAK 385 (423)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~-~g~~~a~~----~~~ 385 (423)
+|...|.++|.+++++..+...++..+..|+++|+||++||++|++.+++++ +.|+++ +||++||+ +++
T Consensus 300 rd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~ 379 (429)
T 1c3c_A 300 RDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNAL 379 (429)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999889998888777777778788999999999999999998777765 677787 99999995 577
Q ss_pred HHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCC
Q 014483 386 KAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGP 421 (423)
Q Consensus 386 ~a~~~g~~l~e~~~~~----~~l~~~~l~~~~dp~~~~g~ 421 (423)
.+.++|++++|++.++ +.++++++++++||.+|+|+
T Consensus 380 ~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~ 419 (429)
T 1c3c_A 380 KTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKH 419 (429)
T ss_dssp HHHTSSSCHHHHHHTCHHHHTTCCHHHHHHTTCTHHHHTT
T ss_pred HHHHhCCCHHHHHhCChhhhccCCHHHHHHhCCHHHHhhh
Confidence 8889999999999887 78999999999999999986
No 15
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=3.1e-80 Score=635.01 Aligned_cols=393 Identities=23% Similarity=0.263 Sum_probs=340.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++|++ +.|+++.++++.++ +.|+|+.+ .+++.+
T Consensus 21 ~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~-------~~f~~~~~~~~~~~----~~~dV~a~~~~l~e~~ 89 (450)
T 1re5_A 21 DRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQA-------ERYDTGALANAIAT----AGNSAIPLVKALGKVI 89 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCG-------GGSCHHHHHHHHHH----HSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc-------CCCCHHHHHHHHhc----cCccHHHHHHHHHHHh
Confidence 57899999999999999999999 999999999999864 23666665554332 34455543 456888
Q ss_pred Cc--cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCCh
Q 014483 79 GH--KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTL 156 (423)
Q Consensus 79 g~--~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~ 156 (423)
|. +. +++|||+|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+|+||||||
T Consensus 90 g~~~~~------~~~~vh~g~SsnD~~~Ta~~l~lr~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~ 162 (450)
T 1re5_A 90 ATGVPE------AERYVHLGATSQDAMDTGLVLQLRDA-LDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTL 162 (450)
T ss_dssp HHHCGG------GGGGTTTTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEH
T ss_pred CCCCCc------ccccccCCCChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccCcH
Confidence 72 11 24566679999999999999998765 57999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHH
Q 014483 157 GQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 236 (423)
Q Consensus 157 G~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~ 236 (423)
||||++|+++|.|+++||.+++++++.+|||| |+||+.+++++ +..+++++++.|||+.++.+ |+++||+++++
T Consensus 163 G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGG-AvGt~~~~~~~-~~~~~~~la~~LG~~~~~~~----~~~~rD~~~e~ 236 (450)
T 1re5_A 163 GMKLAGVLGALTRHRQRLQELRPRLLVLQFGG-ASGSLAALGSK-AMPVAEALAEQLKLTLPEQP----WHTQRDRLVEF 236 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCC-TTSSCGGGGGG-HHHHHHHHHHHHTCBCCSSC----CTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-hhcCCcccCcc-hHHHHHHHHHHhCcCCCCcc----cccccHHHHHH
Confidence 99999999999999999999999999999998 89999998887 78899999999999986543 57999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcc
Q 014483 237 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 314 (423)
Q Consensus 237 ~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~ 314 (423)
+++++.++++|+|||+||++|+ ++||||+.+|. +++|||||||||||+.+|.++++|+++.|++.+++.+. ..+
T Consensus 237 ~~~l~~la~~L~kia~Dl~ll~---~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~-~~~ 312 (450)
T 1re5_A 237 ASVLGLVAGSLGKFGRDISLLM---QTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAM-PQE 312 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---STTTCCEECCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHTC-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHHHhC-hhh
Confidence 9999999999999999999999 57999999996 58999999999999999999999999999999998755 459
Q ss_pred cccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------HhhcccccHHHHH----HHH
Q 014483 315 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPKIGYDNAA----AVA 384 (423)
Q Consensus 315 ~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~~g~~~a~----~~~ 384 (423)
+++|...|.+.|.+++++..+.++++.++..|+++|+||++||++|++.+++++ +.|++.+||++|| +++
T Consensus 313 ~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~gig~~~A~~~v~~~~ 392 (450)
T 1re5_A 313 HERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCC 392 (450)
T ss_dssp TTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999777765 6677789988888 577
Q ss_pred HHHHHcCCCHHHHHHHc----CCCCHHHHhhccCcccccCCC
Q 014483 385 KKAHKEGTTLKDAALKL----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 385 ~~a~~~g~~l~e~~~~~----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
+.|.++|++++|++.++ +.++++++++++||.+|+|+-
T Consensus 393 ~~a~~~g~~l~e~~~~~~~~~~~l~~~~l~~~ldp~~~~~~a 434 (450)
T 1re5_A 393 QRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYLGQA 434 (450)
T ss_dssp HHHHHTTCCHHHHHHTCHHHHHHSCHHHHHHHTCGGGCCTTH
T ss_pred HHHHHhCCCHHHHHHhChhhccCCCHHHHHHhcCHHHHhhhH
Confidence 78889999999999887 679999999999999999863
No 16
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-79 Score=626.92 Aligned_cols=389 Identities=24% Similarity=0.298 Sum_probs=342.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
|+.++++++.+|.|+|.++.+.| ||++++++|.++|++|.++..+++|+++. .++|+|++ +++++.+.+|
T Consensus 28 d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~----~~~dv~~~----~~~~l~e~~g- 98 (462)
T 2e9f_A 28 DRALWREDLWQNRVHARMLHAVGLLSAEELEAILKGLDRIEEEIEAGTFPWRE----ELEDVHMN----LEARLTELVG- 98 (462)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCSCCCG----GGCSHHHH----HHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcccCCcCC----CCCchHHH----HHHHHHHHcc-
Confidence 56889999999999999999999 99999999999999998766667788865 36777777 6788899998
Q ss_pred cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--ceecccCCCCCcCCChhH
Q 014483 81 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDI--VKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 81 ~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~--~m~grTh~Q~A~P~T~G~ 158 (423)
+.|+| +| +|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|+ +||||||+||||||||||
T Consensus 99 ~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~ 170 (462)
T 2e9f_A 99 PPGGK-LH------TARSRNDQVATDLRLYLRGA-IDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAH 170 (462)
T ss_dssp TTHHH-HT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEEEEEEEHHH
T ss_pred ccccc-ee------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCccCeeccHHH
Confidence 67777 77 59999999999999998765 5799999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccc-cCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~-Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~ 237 (423)
||++|+++|.|+++||.+++++++.+||||+|+ ||+++.+++ ++++.|||+. +..|++|++++||++++++
T Consensus 171 ~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~-------~~a~~LG~~~-~~~n~~~~~~~rD~~~e~~ 242 (462)
T 2e9f_A 171 WFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRH-------FTARELGFKA-PMRNSLDAVASRDFALEVL 242 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCSSCCCHH-------HHHHHTTCSE-ECSCHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCCCCCCHH-------HHHHHhCCCC-CCCCcHHHHHccHHHHHHH
Confidence 999999999999999999999999999999887 999988874 6999999995 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcC--cc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSN--GH 314 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~-~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~--~~ 314 (423)
++++.++++|+|||+||++|+|+ ||||+++|+. .+|||||||||||+.+|.++++|+++.|++.+++....+ .+
T Consensus 243 ~~l~~~a~~L~kia~Dl~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~ 319 (462)
T 2e9f_A 243 SALNIGMLHLSRMAEELILYSTE---EFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLA 319 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCEECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCcEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 99999999999999999999985 5999999987 469999999999999999999999999999999854432 35
Q ss_pred cccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccc-----c----HHHHHHHHH
Q 014483 315 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKI-----G----YDNAAAVAK 385 (423)
Q Consensus 315 ~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~-----g----~~~a~~~~~ 385 (423)
++++...+. ..+++++..+..++..+. .++++|+||+++|++|+..++.+++.|++.+ | |+.+.++++
T Consensus 320 ~~rDl~~~~--~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~ 396 (462)
T 2e9f_A 320 YNKDLQEDK--EPLLDALATYRDSLRLLA-ALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVR 396 (462)
T ss_dssp BCGGGGGGH--HHHHHHHHHHHHHHHHHH-HHGGGCEECHHHHHHHHSCSSTTHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred hhhchhhhH--hHHHHHHHHHHHHHHHHH-HHhCcCEECHHHHHHHHhcCccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 666554431 246677777777777775 6999999999999999999998888887765 4 444556778
Q ss_pred HHHHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCCC
Q 014483 386 KAHKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 386 ~a~~~g~~l~e~~~~~-----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
.|.++|++++|++.++ +.++ +++++++||..++..+
T Consensus 397 ~a~~~g~~l~e~~~~~~~~~~~~l~-~~l~~~ldp~~~~~~r 437 (462)
T 2e9f_A 397 RLVEEGRALKDLTLEELQAHHPLFA-EDALPLLRLETAIHRR 437 (462)
T ss_dssp HHHHTTCCGGGCCHHHHHHHCTTCC-GGGGGGGSHHHHTTSC
T ss_pred HHHHHCcCHHHHHHHHHHHhhhhhH-HHHHHhCCHHHHHhcC
Confidence 8889999999987765 7887 7899999999999655
No 17
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=2.4e-79 Score=629.90 Aligned_cols=388 Identities=19% Similarity=0.225 Sum_probs=341.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
|++++++|++||.|+|.++.+.| ||++++++|.++|++|.++..+++|+++. .++|+|++ +++++.+.+|
T Consensus 33 d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~----~~~dv~m~----~~~~l~e~~g- 103 (468)
T 1k7w_A 33 DQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSGLEKISEEWSKGVFVVKQ----SDEDIHTA----NERRLKELIG- 103 (468)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCT----TCCSHHHH----HHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhcccCccCC----CCCchHHH----HHHHHHHHcc-
Confidence 57899999999999999999999 99999999999999998765667788765 36777777 6888999998
Q ss_pred cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHHH
Q 014483 81 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 160 (423)
Q Consensus 81 ~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~ 160 (423)
+.|+| +| +|+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||||
T Consensus 104 ~~g~~-vH------~g~SsnDv~~Ta~~l~lr~~-l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~ 175 (468)
T 1k7w_A 104 DIAGK-LH------TGRSRNDQVVTDLKLFMKNS-LSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFL 175 (468)
T ss_dssp GGGGG-GG------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHH
T ss_pred ccccc-ee------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcCCccchHHHHH
Confidence 67777 88 49999999999999998765 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccc-cCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHH
Q 014483 161 SGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239 (423)
Q Consensus 161 a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~-Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~ 239 (423)
++|+++|.|+++||.+++++++.+||||+|+ ||+++.+++ ++++.|||+. +..|++|++++||++++++++
T Consensus 176 ~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~-------~la~~LG~~~-~~~n~~~~~~~rD~~~e~~~~ 247 (468)
T 1k7w_A 176 LSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDRE-------MLRSELEFAS-ISLNSMDAISERDFVVEFLSF 247 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCTTCCCHH-------HHHHHHTCSE-ECSCHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCCCCCChH-------HHHHHcCCCC-CCCChHHHHHccHHHHHHHHH
Confidence 9999999999999999999999999999887 999988774 6999999995 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcC--cccc
Q 014483 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSN--GHFE 316 (423)
Q Consensus 240 l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~-~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~--~~~e 316 (423)
++.++++|+|||+||++|+|+ ||||+++|+. .+|||||||||||+.+|.++++|+++.|++.+++....+ .+++
T Consensus 248 l~~la~~L~kia~Dl~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~ 324 (468)
T 1k7w_A 248 ATLLMIHLSKMAEDLIIYSTS---EFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYN 324 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCEEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhh
Confidence 999999999999999999985 5999999987 469999999999999999999999999999999854432 3566
Q ss_pred cccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccc-----cHHHHH----HHHHHH
Q 014483 317 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKI-----GYDNAA----AVAKKA 387 (423)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~-----g~~~a~----~~~~~a 387 (423)
++...+. ..+++++..+..++..+. .++++|+||+++|++|+..+ .++++|++.+ ||++|| ++++.|
T Consensus 325 rDl~~~~--~~l~~s~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~-~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a 400 (468)
T 1k7w_A 325 KDLQEDK--EAVFDVVDTLTAVLQVAT-GVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLA 400 (468)
T ss_dssp GGGGGHH--HHHHHHHHHHHHHHHHHH-HHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhH--hHHHHHHHHHHHHHHHHH-HHhCCCEECHHHHHHHhhCC-ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6654431 246677777777777775 69999999999999999988 8888877654 555555 677788
Q ss_pred HHcCCCHHHHHHHc-----CCCCHHHHhhccCcccccCCC
Q 014483 388 HKEGTTLKDAALKL-----GVLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 388 ~~~g~~l~e~~~~~-----~~l~~~~l~~~~dp~~~~g~~ 422 (423)
.++|++++|++.++ +.++ +++++++||..++..+
T Consensus 401 ~~~g~~l~e~~~~~~~~~~~~l~-~~~~~~ldp~~~~~~r 439 (468)
T 1k7w_A 401 ETKGITINKLSLEDLKSISPQFS-SDVSQVFNFVNSVEQY 439 (468)
T ss_dssp HTTTCCGGGCCHHHHHHHCTTCC-GGGGGGSCHHHHHTTC
T ss_pred HHhCCChHHHHHHHHHHHHHhhH-HHHHHhCCHHHHHhcC
Confidence 89999999987766 7787 6899999999999655
No 18
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=8.9e-78 Score=616.62 Aligned_cols=391 Identities=19% Similarity=0.239 Sum_probs=336.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
|..++++.+.++.|+|.++.+.| ||++++++|.++|+++.++..+++|+++.. +++|+|++ +++++.+.+|
T Consensus 26 d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~---~~~dv~~~----v~~~l~e~~g- 97 (457)
T 1tj7_A 26 DYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILES---DAEDIHSW----VEGKLIDKVG- 97 (457)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGS---CCSSHHHH----HHHHHHHHHG-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCC---CCCcHHHH----HHHHHHHHcc-
Confidence 35788999999999999999999 999999999999998876555567777632 46777777 5678899998
Q ss_pred cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHHH
Q 014483 81 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 160 (423)
Q Consensus 81 ~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~ 160 (423)
+.|+| +| +|+||||+++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||||
T Consensus 98 ~~g~~-vH------~g~SsnD~~~Ta~~l~lr~~-l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~ 169 (457)
T 1tj7_A 98 QLGKK-LH------TGRSRNDQVATDLKLWCKDT-VSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWC 169 (457)
T ss_dssp GGGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEEEEHHHHH
T ss_pred ccccc-ee------cCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCeechHHHHH
Confidence 46777 77 59999999999999998765 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccc-cCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHH
Q 014483 161 SGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239 (423)
Q Consensus 161 a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~-Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~ 239 (423)
++|+++|.|+++||.+++++++.+||||+|+ ||+++++++ ++++.|||+. +..|++||+++||++++++++
T Consensus 170 ~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~~~~~~~-------~la~~LGl~~-~~~n~~~~~~~rD~~~e~~~~ 241 (457)
T 1tj7_A 170 LAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDRE-------QLAGWLGFAS-ATRNSLDSVSDRDHVLELLSA 241 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHH-------HHHHHHTCSS-BCSCHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCCCCCCHH-------HHHHHcCCCC-CCCChHHHHHccHHHHHHHHH
Confidence 9999999999999999999999999999887 999988874 6999999996 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCC-CCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcC--cccc
Q 014483 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSN--GHFE 316 (423)
Q Consensus 240 l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~-~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~--~~~e 316 (423)
++.++++|+|||+||++|+|+ ||||+++|+. .+|||||||||||+.+|.++++|+++.|+..+++....+ .+++
T Consensus 242 l~~~a~~L~kia~Di~ll~s~---e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~ 318 (457)
T 1tj7_A 242 AAIGMVHLSRFAEDLIFFNTG---EAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYN 318 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTST---TTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhh
Confidence 999999999999999999985 6999999987 479999999999999999999999999999999654433 3555
Q ss_pred cccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccc---c--HHHHH----HHHHHH
Q 014483 317 LNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKI---G--YDNAA----AVAKKA 387 (423)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~---g--~~~a~----~~~~~a 387 (423)
++..... ..+++++..+..++..+. .|+++|+||+++|++|+..++.+++.|++.+ | |++|| ++++.|
T Consensus 319 RDl~~~~--~~l~~s~~~~~~~l~~~~-~~l~gl~vn~~~m~~~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a 395 (457)
T 1tj7_A 319 KDMQEDK--EGLFDALDTWLDCLHMAA-LVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEA 395 (457)
T ss_dssp GGGGGHH--HHHHHHHHHHHHHHHHHH-HHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cchhhHH--hHHHHHHHHHHHHHHHHH-HHHccCEECHHHHHHHHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5543211 236666777777777775 5999999999999999999988888877654 4 56555 577788
Q ss_pred HHcCCCHHHHHHHc-C---CCCHHHHhhccCcccccCCC
Q 014483 388 HKEGTTLKDAALKL-G---VLNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 388 ~~~g~~l~e~~~~~-~---~l~~~~l~~~~dp~~~~g~~ 422 (423)
.++|++++|++.++ . .+.++++++++||.+++..+
T Consensus 396 ~~~g~~l~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~r 434 (457)
T 1tj7_A 396 IRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKR 434 (457)
T ss_dssp HHHTCCGGGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTC
T ss_pred HHHCcCHHHHHHHHHHHHhhhcHHHHHHhCCHHHHHhcc
Confidence 89999999987765 3 12356899999999998544
No 19
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=3.7e-76 Score=596.09 Aligned_cols=361 Identities=20% Similarity=0.229 Sum_probs=308.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHH--HHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN--RAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~--~l~~~~ 78 (423)
+++++++|++||.|+|.++.+.| ||++++++|.++ .|+++.++++.++ +.|+|+.+ .+.+.+
T Consensus 21 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----------~~d~~~~~~~~~~----~~~dVia~~~~l~e~~ 85 (403)
T 1dof_A 21 NEAIINAYLEVERALVCALEELGVAERGCCEKVNKA-----------SVSADEVYRLERE----TGHDILSLVLLLEQKS 85 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC-----------CCCTTTC------------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC-----------CCCHHHHHHHhhc----cCCcHHHHHHHHHHHc
Confidence 57899999999999999999999 999999999886 2456666555443 56777665 457888
Q ss_pred CccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 79 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 79 g~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
| |+| +| +|+||||+++|+++|++++. +..+.+.|..|+++|.++|++|+|++||||||+||||||||||
T Consensus 86 G---g~~-vH------~g~SsnD~~~Ta~~l~~r~~-l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~ 154 (403)
T 1dof_A 86 G---CRY-VH------YGATSNDIIDTAWALLIRRA-LAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGF 154 (403)
T ss_dssp C---CSC-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred C---CCc-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCcccccCcHHH
Confidence 7 667 77 59999999999999998765 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhh-hchHHHHHH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALA-AHDAFVETS 237 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~-~rd~~~e~~ 237 (423)
||++|+++|.|+ +||.+++++++.+|||| |+||+.+..+ |+..+++++++.|||+.++.+| +. +||++++++
T Consensus 155 ~~~~~~~~l~r~-~rL~~~~~~~~~~~lGg-AvGt~~~~~~-~~~~~~~~~a~~lGl~~~~~~~----~~~~rD~~~e~~ 227 (403)
T 1dof_A 155 KFANYYYELYIA-CRQLALAEEFIRAKIGG-AVGTMASWGE-LGLEVRRRVAERLGLPHHVITT----QVAPRESFAVLA 227 (403)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHCCBCCCC-TTSSCGGGGG-GHHHHHHHHHHHTTCCBCSSCS----SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcccCccH-HHhhCccccc-ccHHHHHHHHHHhCcCCCCCcc----hhhccHHHHHHH
Confidence 999999999999 99999999999999999 8999988755 7888999999999999866554 57 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccc
Q 014483 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFEL 317 (423)
Q Consensus 238 ~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~ 317 (423)
++++.++++|+|||+||++|+ ++||||+.+| + +|||||||||||+.+|.++++|+++.|+..+++.+ ..+++++
T Consensus 228 ~~l~~~a~~L~kia~Dl~ll~---~~e~~ei~lp-~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~-~~~~~er 301 (403)
T 1dof_A 228 SALALMAAVFERLAVEIRELS---RPEIGEVVEG-G-GGSSAMPHKANPTASERIVSLARYVRALTHVAFEN-VALWHER 301 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---STTTCSEESC-C----------CCCHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CCccCeEeCC-C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHc-Ccccccc
Confidence 999999999999999999999 5799999999 7 99999999999999999999999999999988774 4578999
Q ss_pred ccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH------Hhhccc-ccHHHHHHHHH----H
Q 014483 318 NVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV------TSLNPK-IGYDNAAAVAK----K 386 (423)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~------~~la~~-~g~~~a~~~~~----~ 386 (423)
|...|.+.|..++++..+...++..+..|+++|+||++||+++++.+.+++ +.|+++ +||++||+++. +
T Consensus 302 d~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~gig~~~A~~iv~~~~~~ 381 (403)
T 1dof_A 302 DLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKAL 381 (403)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 999988887777777776666677668999999999999999999888876 678887 99999999865 7
Q ss_pred HHHcCC-CHHHHHHHc
Q 014483 387 AHKEGT-TLKDAALKL 401 (423)
Q Consensus 387 a~~~g~-~l~e~~~~~ 401 (423)
|.++|+ +++|++.+.
T Consensus 382 a~~~g~~~l~e~~~~~ 397 (403)
T 1dof_A 382 TFEYQKWPVERLIEDA 397 (403)
T ss_dssp CCGGGGCCHHHHHHHH
T ss_pred HHHhCCcCHHHHHHHH
Confidence 888998 999987753
No 20
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=5.1e-75 Score=592.29 Aligned_cols=384 Identities=17% Similarity=0.164 Sum_probs=308.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
++++++.|++||.|++.++++ | ||++++++|.++++ |+++.+.+...+ .+.++.. ++..+.+.+|+
T Consensus 16 ~~~~~~~~l~ve~Ala~a~~~-GlIp~~~~~~i~~~~~----------~d~~~i~~~e~~-~~hdV~a-~~~~l~e~~g~ 82 (438)
T 4eei_A 16 DENKYAKMLEVELAILEALED-RMVPKGTAAEIRARAQ----------IRPERVDEIEKV-TKHDIIA-FCTSIAEQFTA 82 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTSCTTHHHHHHHHCC----------CCHHHHHHHHHH-HSCHHHH-HHHHHHTTSCT
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHhhCC----------CCHHHHHHHHHh-cCCCHHH-HHHHHHHHcCH
Confidence 468999999999999999999 9 99999999988752 111111100000 1223333 45678899986
Q ss_pred cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHHH
Q 014483 81 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 160 (423)
Q Consensus 81 ~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~ 160 (423)
+.|+| +|+ |+|||||++|+++|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||||
T Consensus 83 ~~~~~-iH~------G~SsnDv~~Ta~~L~lr~~-~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~ 154 (438)
T 4eei_A 83 ETGKF-FHF------GVTSSDIIDSALSLQIRDS-MSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKF 154 (438)
T ss_dssp TTTTT-TTC------SCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEETHHHH
T ss_pred Hhhcc-cCC------CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCCchhHHHHH
Confidence 55777 774 9999999999999998765 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHHH
Q 014483 161 SGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240 (423)
Q Consensus 161 a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~l 240 (423)
++|+++|.|+++||.+++++++.+|||| |+||++++++ .+++++++.|||+.. +++ +++++||+++++++++
T Consensus 155 ~~~~~~l~r~~~rL~~~~~~~~~~~lgG-AvGT~~~~~~----~~~~~~a~~LG~~~~--~~~-~~v~~rD~~~e~~~~l 226 (438)
T 4eei_A 155 LGAYVEFKRRLKDLKDFQKDGLTVQFSG-AVGNYCILTT----EDEKKAADILGLPVE--EVS-TQVIPRDRIAKLISIH 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCCCC-TTSCCSSSCH----HHHHHHHHHHTCCBC--SSC-SSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcc-HhhCcccccH----HHHHHHHHHcCCCCC--Ccc-ccccccHHHHHHHHHH
Confidence 9999999999999999999999999997 8999988755 456789999999853 333 4688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceeEecC--CCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483 241 NTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN 318 (423)
Q Consensus 241 ~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~--~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~ 318 (423)
+.++++|+|||+||++|+ ++||||+.+| ++++|||||||||||+.+|+++++|+++.|++.+.+. ....+++++
T Consensus 227 ~~~a~~L~kia~Di~ll~---~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~-~~~~~~erd 302 (438)
T 4eei_A 227 GLIASAIERLAVEIRHLH---RSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTGMARMLRSHVSIALE-NCVLWHERD 302 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH---STTTCSEECCC------------CCCCHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHh---ccccceeccccccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-ccchhcCcc
Confidence 999999999999999999 5799999998 4689999999999999999999999999999866543 344578888
Q ss_pred cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHH------hhcc-cccHHHHHHH----HHHH
Q 014483 319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT------SLNP-KIGYDNAAAV----AKKA 387 (423)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~------~la~-~~g~~~a~~~----~~~a 387 (423)
...|..+|..++++..+.++++.++..++++|+||+++|++|++.++++++ .|++ .+++++||++ +++|
T Consensus 303 l~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~Ah~~v~~~~~~a 382 (438)
T 4eei_A 303 ISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDL 382 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHHHHHHHHHC----
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888888888999999999999998899999999999999999998776643 3443 3688888864 4577
Q ss_pred HHcCCCHHHHHHHc------C--CCCHHHHhhccCcccccCC
Q 014483 388 HKEGTTLKDAALKL------G--VLNSEEFDNLVVPEKMIGP 421 (423)
Q Consensus 388 ~~~g~~l~e~~~~~------~--~l~~~~l~~~~dp~~~~g~ 421 (423)
.+ |++|+|++.++ . .+++++++++|| .|.|+
T Consensus 383 ~~-g~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~d--~~gG~ 421 (438)
T 4eei_A 383 KQ-GESFSKKLQKVMHDEHNIILDIPEMDFEGIKK--TYLKE 421 (438)
T ss_dssp ----CCHHHHHHHHHHHTTCCCCCCCCCSHHHHHH--HHTTT
T ss_pred hc-CCCHHHHHHHHHhhhhccccCCCHHHHHHHHH--hcCCc
Confidence 78 99999998763 2 467788999999 67765
No 21
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=8.8e-75 Score=595.59 Aligned_cols=396 Identities=15% Similarity=0.124 Sum_probs=336.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHH
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA 74 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip------~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l 74 (423)
+++++++|+++|.|++.++++.| || ++++++|.++|+++..+ +++.++++. +..++++++++ ..+
T Consensus 29 d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~~~~i~~g------~~~~~~~~~-~~~~~dv~av~-~~l 100 (462)
T 2ptr_A 29 EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEE------DAARIKTIE-RTTNHDVKAVE-YFL 100 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHHHHTCCHH------HHHHHHHHH-HHHSCHHHHHH-HHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHhccC------CHHHHHhhc-cccCCCHHHHH-HHH
Confidence 46899999999999999999998 83 89999999999765321 233333332 44567886665 556
Q ss_pred HHHhCccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcC
Q 014483 75 AEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATP 153 (423)
Q Consensus 75 ~~~~g~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~-~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P 153 (423)
.+.+|+ .|.. .|+++|||+|+|||||++|+++|++++. +. .|.+.|..|+++|.++|++|+|++||||||+|+|||
T Consensus 101 ~e~~g~-~g~~-~~~~~~vH~g~SsnDv~~Ta~~L~lr~~-l~~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P 177 (462)
T 2ptr_A 101 KEKVAE-IPEL-HAVSEFIHFACTSEDINNLSHALMLKTA-RDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATP 177 (462)
T ss_dssp HHHHTT-SHHH-HTTGGGTTTTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEE
T ss_pred HHHhcc-ccCC-cchhhhccCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCeecee
Confidence 788983 4444 6778899999999999999999998765 57 599999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcch----HHHHHHHHHHcCCCCCcCCchhH-Hhh
Q 014483 154 LTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD----VKIASAVAEETSLPFVTAENKFE-ALA 228 (423)
Q Consensus 154 ~T~G~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~----~~~~~~la~~LGl~~~~~~n~~d-a~~ 228 (423)
|||||||++|+++|.|+++||.+++ ..+++|| |+||+.+..+.|+ .++.+.+++.|||. .|+++ +++
T Consensus 178 ~T~G~~~~~~~~~l~r~~~rL~~~~---~~~~~~G-AvGT~~~~~~~~~~~~~~~v~~~~~~~LGl~----~n~~~~~~~ 249 (462)
T 2ptr_A 178 STIGKEMANVAYRMERQYRQLNQVE---ILGKING-AVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQ----WNPYTTQIE 249 (462)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHCC---CEECCCC-TTSSCHHHHHHCTTSCHHHHHHHHHHHTTCE----ECCCCSSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---HHhccCc-hhcchhhcccccCcccHHHHHHHHHHHhCCC----CCchhhhhc
Confidence 9999999999999999999999988 3677777 9999875555555 67889999999994 55677 488
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhh
Q 014483 229 AHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 308 (423)
Q Consensus 229 ~rd~~~e~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~ 308 (423)
+||++++++++++.++++|+|||+||++|+|+|+ |+| ..|++++|||||||||||+.+|.++++|+++.|+..+++.
T Consensus 250 ~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~--~~E-~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~ 326 (462)
T 2ptr_A 250 PHDYIAELFDCVARFNTILIDFDRDVWGYIALNH--FKQ-KTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS 326 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--EEE-CCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--hhc-cCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999763 555 3456799999999999999999999999999999988888
Q ss_pred hhcCcccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHH-----hhcccccHHHHHHH
Q 014483 309 GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVT-----SLNPKIGYDNAAAV 383 (423)
Q Consensus 309 ~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~-----~la~~~g~~~a~~~ 383 (423)
....+++++|...|.+.+.++.++..+..++..+. .|+++|+||++||++|+..++++++ .|.+. |+++||++
T Consensus 327 ~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~-~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~l~~~-G~~~A~~i 404 (462)
T 2ptr_A 327 KLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTL-KGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRY-GIEKPYEK 404 (462)
T ss_dssp HTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHH-HHHHHEEECHHHHHHHHTTCGGGGHHHHHHHHHHT-TCSSHHHH
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHHHHHHHH-HHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHhh-ChHHHHHH
Confidence 76678999999999888888899999988888886 7999999999999999999999887 45554 99999999
Q ss_pred HHHHHH----cCCCHHHHHHHcCCC--CHHHHhhccCcccccCCC
Q 014483 384 AKKAHK----EGTTLKDAALKLGVL--NSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 384 ~~~a~~----~g~~l~e~~~~~~~l--~~~~l~~~~dp~~~~g~~ 422 (423)
++++.. +|++++|++.+.+.. .+++++ ++||.+|+|+.
T Consensus 405 v~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~l~-~ldp~~~~~~a 448 (462)
T 2ptr_A 405 LKELTRGKRVDAEGMKQFIDGLALPEEEKARLK-AMTPANYIGRA 448 (462)
T ss_dssp HHHC-----CCHHHHHHHHHTSSSCHHHHHHHH-TCCGGGCCTTH
T ss_pred HHHHHHHHHHcCCCHHHHHHhcCCCcccHHHHH-hCCHHHHhChH
Confidence 987776 889999998765522 367899 99999999963
No 22
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.5e-73 Score=585.57 Aligned_cols=392 Identities=16% Similarity=0.153 Sum_probs=308.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG---LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g---ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~ 78 (423)
++++++.|+++|.|++.++++.| ||++++++|.++++++. .+...+. ....+.+++.+++. +.+.+
T Consensus 27 ~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~---------~~~~~~~-e~~~~~DV~a~v~~-l~e~~ 95 (478)
T 1yis_A 27 ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFD---------WPFIRSE-ERKLKHDVMAHNHA-FGKLC 95 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCC---------HHHHHHH-HHHSSCHHHHHHHH-HHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC---------HHHHhhH-HHhcCCcHHHHHHH-HHHhh
Confidence 46899999999999999999999 59999999998765432 1111110 01123456666764 78889
Q ss_pred CccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483 79 GHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ 158 (423)
Q Consensus 79 g~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~ 158 (423)
| +.|+| +|+ |+||||+++|+..|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||
T Consensus 96 g-~~~~~-iH~------G~TS~Di~~ta~~L~lr~~-l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~ 166 (478)
T 1yis_A 96 P-TAAGI-IHL------GATSCFVQDNADLIAYRDS-IDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGK 166 (478)
T ss_dssp T-TTGGG-TTT------TCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHH
T ss_pred h-hchhh-eeC------CCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccceeccHHH
Confidence 8 56777 885 9999999999999888665 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCC------CCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchH
Q 014483 159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 232 (423)
Q Consensus 159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~------~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~ 232 (423)
+|++|+++|.|+++||.++++++..+++|| ++||+ ++.|+.....+.+++++.|||+. +..|++ ++++||+
T Consensus 167 ~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg-~~GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~-~~~~s~-~~~~rd~ 243 (478)
T 1yis_A 167 RGVLWAQELLMAFQSLSEFRDKMRFRGIKG-ATGTQDSFLTLFAGDESKVEALDELVTKKANFSN-RFLITG-QTYSRQQ 243 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCBCCSCT-TTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSC-BCSSCS-SSCCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhccchhhhcccCcchhhHHHHHHHHHHHhCcCC-CCCccc-cccCChH
Confidence 999999999999999999999999999988 68998 67666556788899999999995 445554 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhh
Q 014483 233 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGG 310 (423)
Q Consensus 233 ~~e~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~ 310 (423)
+++++++++.++++|+|||+||++|+| +||+.+|. +++|||||||||||+.+|.++++|+++.|++++++...
T Consensus 244 ~~e~~~~l~~~a~~L~kia~Di~ll~s-----~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~ 318 (478)
T 1yis_A 244 DSQLVFSLSLLGAAAKKVCTDIRVLQA-----FGELLEPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTIL 318 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSEECC-------------CCCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhheeccccCCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 999999999999999999999999995 99999994 58999999999999999999999999999998888877
Q ss_pred cCcccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhH-HHh-----hccc-ccHHHHHHH
Q 014483 311 SNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML-VTS-----LNPK-IGYDNAAAV 383 (423)
Q Consensus 311 ~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~-~~~-----la~~-~g~~~a~~~ 383 (423)
..+++|+|...|...+..++++..+.++++.++..|+++|+||+++|++|+..++++ +++ +.++ +++++||++
T Consensus 319 ~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~ 398 (478)
T 1yis_A 319 ADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAV 398 (478)
T ss_dssp HTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHHHHHcCCCHHHHHHH
Confidence 888999999999988889999999999999999999999999999999999998776 443 3332 667899986
Q ss_pred HHH--------HHHcCCCHHHHHHHcCC-CCHHHHhhcc-CcccccCC
Q 014483 384 AKK--------AHKEGTTLKDAALKLGV-LNSEEFDNLV-VPEKMIGP 421 (423)
Q Consensus 384 ~~~--------a~~~g~~l~e~~~~~~~-l~~~~l~~~~-dp~~~~g~ 421 (423)
+++ +.++|+++.++..+... +++++++++| ||.+|+|+
T Consensus 399 v~~~a~~~~~~v~~~g~~~~~l~~~~~~~l~~~el~~~l~dp~~~~g~ 446 (478)
T 1yis_A 399 IRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVNNPINFTGR 446 (478)
T ss_dssp --------------------CCCTTTTSTTTHHHHHHHHHCGGGGSTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHhCHHHHcCc
Confidence 632 22577774443322233 6899999999 99999986
No 23
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=2.4e-72 Score=581.73 Aligned_cols=393 Identities=16% Similarity=0.130 Sum_probs=325.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG--LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG 79 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g--ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g 79 (423)
++++++.|+++|.|++.++++.| ||++++++|.++++++ ..+...+. ....+.+++.+++ .+.+.+|
T Consensus 54 ~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i---------~~~~~~~~-e~~~~hDV~a~v~-~l~e~~g 122 (503)
T 2j91_A 54 DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENI---------DFKMAAEE-EKRLRHDVMAHVH-TFGHCCP 122 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCC---------CHHHHHHH-HHHHSCHHHHHHH-HHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---------CHHHHhhh-hhhcCCcHHHHHH-HHHHHhc
Confidence 46899999999999999999999 9999999999865432 12111110 0112345666676 4788898
Q ss_pred ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHH
Q 014483 80 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE 159 (423)
Q Consensus 80 ~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~ 159 (423)
+.|+| +|+ |+||||+++|+..|++++. +..|.+.|..|+++|.++|++|+|++||||||+||||||||||+
T Consensus 123 -~~~~~-iH~------G~TS~Di~dta~~L~lr~a-l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~ 193 (503)
T 2j91_A 123 -KAAGI-IHL------GATSCYVGDNTDLIILRNA-LDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKR 193 (503)
T ss_dssp -TTGGG-TTT------TCCTHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHH
T ss_pred -ccccc-ccC------CCCHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceecchHHH
Confidence 56777 775 9999999999999888665 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccCC------CCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHH
Q 014483 160 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTG------LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 233 (423)
Q Consensus 160 ~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~------~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~ 233 (423)
|++|+++|.|+++||.++++++..+++|| ++||+ ++.|+.....+.+.+++.|||+. +..|++ ++++||++
T Consensus 194 ~~~~~~~l~rd~~RL~~~~~~l~~lg~gG-~~GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~-~~~~s~-~~~~rd~~ 270 (503)
T 2j91_A 194 CCLWIQDLCMDLQNLKRVRDDLRFRGVKG-TTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR-AFIITG-QTYTRKVD 270 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCCSCC-TTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSC-BCSCCS-SSCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc-cccchhhhccccCCchHHHHHHHHHHHHHhCCCC-CCCccc-ccccChHH
Confidence 99999999999999999999999999988 68998 66666555788899999999995 345554 68899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCC--CCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhc
Q 014483 234 VETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPE--NEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGS 311 (423)
Q Consensus 234 ~e~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~--~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~ 311 (423)
++++++++.++++|+|||+||++|+| +||+.+|. +++|||||||||||+.+|+++++|+++.|++++++....
T Consensus 271 ~e~~~~la~la~~L~kia~Dirll~s-----~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~ 345 (503)
T 2j91_A 271 IEVLSVLASLGASVHKICTDIRLLAN-----LKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTAS 345 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSEECCC-----------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-----cceeeccccCCCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999995 99999994 589999999999999999999999999999988887778
Q ss_pred CcccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhH-HHh-----hccc-ccHHHHHHHH
Q 014483 312 NGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLML-VTS-----LNPK-IGYDNAAAVA 384 (423)
Q Consensus 312 ~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~-~~~-----la~~-~g~~~a~~~~ 384 (423)
.+++|+|...|...+..++++..+.++++.++..|+++|+||+++|++|+..++++ +++ +.++ +++++||+++
T Consensus 346 ~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v 425 (503)
T 2j91_A 346 VQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKI 425 (503)
T ss_dssp TCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHH
T ss_pred cCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 88999999999988999999999999999999999999999999999999998776 333 4443 7889999876
Q ss_pred HH-HHH-------c--CCCHHHHHHHcCC--CCHHHHhhccCcccccCCC
Q 014483 385 KK-AHK-------E--GTTLKDAALKLGV--LNSEEFDNLVVPEKMIGPS 422 (423)
Q Consensus 385 ~~-a~~-------~--g~~l~e~~~~~~~--l~~~~l~~~~dp~~~~g~~ 422 (423)
++ +.+ . +.+|.|.+..++. ++++++++++||.+|+|+.
T Consensus 426 ~~~a~~~g~~V~~~~~~~~l~e~l~~~~~~~l~~eel~~~ldp~~~~g~a 475 (503)
T 2j91_A 426 RVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRA 475 (503)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHCGGGHHHHTTHHHHTCGGGGSTTH
T ss_pred HHHHHHhhhHHHHHHhcccHHHHHhcCcccCCCHHHHHHhcCHHHhCCcH
Confidence 32 221 2 2478887776665 5688999999999999863
No 24
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=3.5e-71 Score=551.09 Aligned_cols=329 Identities=19% Similarity=0.167 Sum_probs=276.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhCc
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGH 80 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g~ 80 (423)
++++|++|++||.|+|.++.+.| ||++++++|.++|+++. |+++.++++..++.+ ++++++. .+.+.+|+
T Consensus 26 ~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~-------~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~g~ 96 (359)
T 2fel_A 26 AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFA-------ADMSALRHGVAKDGV-VVPELIR-QMRAAVAG 96 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCC-------CCHHHHHHHHHHHSS-SHHHHHH-HHHTTSCG
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcc-------ccHHHHHhhccccCC-cHHHHHH-HHHHHcCc
Confidence 57899999999999999999999 99999999999998753 455555544444434 6777654 45667775
Q ss_pred cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHHH
Q 014483 81 KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 160 (423)
Q Consensus 81 ~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~~ 160 (423)
+.++| +| +|+|||||++|+++|++++. ++.|.+.|..|+++|.++|++|+|++||||||+||||||||||||
T Consensus 97 ~~~~~-vH------~G~SsnDv~~Ta~~l~lr~~-l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~ 168 (359)
T 2fel_A 97 QAADK-VH------FGATSQDVIDTSLMLRLKMA-AEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRA 168 (359)
T ss_dssp GGGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cccch-hc------CCCCHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccccchHHHHH
Confidence 55555 55 69999999999999998765 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHHH
Q 014483 161 SGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240 (423)
Q Consensus 161 a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~l 240 (423)
++|+++|.|+++||.+++++++.+|||| |+||+.+ .++++..+++++++.|||+.++ +|+++||+++++++++
T Consensus 169 ~~~~~~l~r~~~rL~~~~~~~~~~~lGg-avGT~~~-~~~~~~~~~~~~a~~LG~~~~~-----~~~~~RD~~~e~~~~l 241 (359)
T 2fel_A 169 AGWIAPLERHLLRLETFAQNGFALQFGG-AAGTLEK-LGDNAGAVRADLAKRLGLADRP-----QWHNQRDGIAEFANLL 241 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSBCCCCC-TTSSCTT-TGGGHHHHHHHHHHHHTCBCCC-----CCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcH-HhccCcc-CcchHHHHHHHHHHHhCcCCCc-----hHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999 7999755 3567889999999999999753 3678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccccc
Q 014483 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVF 320 (423)
Q Consensus 241 ~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~~~ 320 (423)
+.++++|+|||+||++|+| +| ||+.+|. ++|||||||||||+.+|.++++++++.|++.+++. ...+|+|++..
T Consensus 242 ~~~a~~L~kia~Dirll~s---~e-~Ei~~~~-~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~~-~~~~~~er~~~ 315 (359)
T 2fel_A 242 SLVTGTLGKFGQDIALMAE---IG-SEIRLSG-GGGSSAMPHKQNPVNAETLVTLARFNAVQISALHQ-SLVQEQERSGA 315 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HC-TTEEEC-------------CCHHHHHHHHHHHHHHHHHHHHHH-TTCCCSSBCHH
T ss_pred HHHHHHHHHHHHHHHHHhC---CC-CeecCCC-CCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCc
Confidence 9999999999999999996 68 9999986 49999999999999999999999999999988775 56778999988
Q ss_pred hhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHH
Q 014483 321 KPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360 (423)
Q Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~ 360 (423)
.|..+|..++.++.+.+.++..+..++++|+||+++|..+
T Consensus 316 ~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 316 GWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 8888888899999988999988899999999999999764
No 25
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=2.4e-69 Score=555.67 Aligned_cols=391 Identities=18% Similarity=0.189 Sum_probs=303.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHHccccCCCCc-ccccccCcccccccchHHHHHHHHHHHh
Q 014483 2 PEPIVRAFGILKKCAAKVNMEY-G-LDPAIGKAIMQAAQEVAEGKLNDHFP-LVVWQTGSGTQSNMNANEVIANRAAEIL 78 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~-g-ip~~~a~~I~~a~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ie~~l~~~~ 78 (423)
+++++++|+++|.||+.++++. | ||++++++|.+ +.++.+....+.+. +..+......| + -.++..+++.+
T Consensus 28 d~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~-l~~~~~~~~~~d~~~i~~~e~~~~hD----V-~a~e~~l~e~~ 101 (465)
T 2qga_B 28 EHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEV-LNQIATNITDSDIARVKAIEEETNHD----V-KAVEYFVKEKL 101 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHSCH----H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHhhccccHHHHHHHhhccCCC----h-HHHHHHHHHHh
Confidence 4689999999999999999999 9 99999999975 33332211000010 10111112233 3 33678889999
Q ss_pred Cc-------cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcceecccCCCC
Q 014483 79 GH-------KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQD 150 (423)
Q Consensus 79 g~-------~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~-~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~ 150 (423)
|. +.|+| +| +|+|||||++|+++|++++. +. .|.+.|..|+++|.++|++|+|++||||||+||
T Consensus 102 g~~~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~-l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~ 173 (465)
T 2qga_B 102 KNSKREDLLKIKEY-VH------YLCTSEDINNVAYATCLKAC-LNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQP 173 (465)
T ss_dssp HTSCCHHHHHHGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEE
T ss_pred cccccccchhhhhh-cc------CCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCcc
Confidence 72 44666 66 59999999999999998665 66 799999999999999999999999999999999
Q ss_pred CcCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCC----Ccch-HHHHHHHHHH-cCCCCCcCCchh
Q 014483 151 ATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTK----KGFD-VKIASAVAEE-TSLPFVTAENKF 224 (423)
Q Consensus 151 A~P~T~G~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~----~~~~-~~~~~~la~~-LGl~~~~~~n~~ 224 (423)
||||||||||++|+++|.|+++||.+++ .+++||||+|| ++.. ++.+ ..+.+.+++. |||+.++.+
T Consensus 174 A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~~p~~d~~~~~~~~~~~~LGl~~~~~~--- 245 (465)
T 2qga_B 174 ASSTTFGKEMANFYARIHHHVGVIRRVK----VCAKFNGAVGN-FNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYC--- 245 (465)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHSC----CEECCCCTTSS-CHHHHHHCTTCCHHHHHHHHHHHHHCCEECCCC---
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH----HhccccchhcC-ccccccccCcccHHHHHHHHHHHHhCCCCCCCc---
Confidence 9999999999999999999999999887 56777779999 3211 1111 2455566665 999875433
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhH
Q 014483 225 EALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHV 304 (423)
Q Consensus 225 da~~~rd~~~e~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~ 304 (423)
+++.+||++++++++++.++++|+|||+||++|+|+ |+.+...|++++|||||||||||+.+|.++++++.+.|...
T Consensus 246 ~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~~~~ 322 (465)
T 2qga_B 246 TQIQDHDYICELCDGLARANGTLIDLCVDIWLYISN---NLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFK 322 (465)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEEC-------CCSCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999983 56444455679999999999999999999999999999988
Q ss_pred HHhhhhcCcccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH-----HhhcccccHHH
Q 014483 305 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV-----TSLNPKIGYDN 379 (423)
Q Consensus 305 ~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~-----~~la~~~g~~~ 379 (423)
.++......+++++...|...+.++..+..+...+..+ ..++++|+||+++|++|+..+++++ +.|+++ |+++
T Consensus 323 ~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~~L~~~-G~~~ 400 (465)
T 2qga_B 323 LFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSV-LKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRH-NYVD 400 (465)
T ss_dssp HHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHHHEEECHHHHHHHHHTCGGGGHHHHHHHHHHT-TCSC
T ss_pred HHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHccCEECHHHHHHHHHcCCChHHHHHHHHHHHh-ChHH
Confidence 88776656678888777766666666666666666666 4799999999999999999999876 566666 9999
Q ss_pred HHHHHHHHHHcCC-----CHHHHHHHcC-CCCH---HHHhhccCcccccCC
Q 014483 380 AAAVAKKAHKEGT-----TLKDAALKLG-VLNS---EEFDNLVVPEKMIGP 421 (423)
Q Consensus 380 a~~~~~~a~~~g~-----~l~e~~~~~~-~l~~---~~l~~~~dp~~~~g~ 421 (423)
||++++++.. +. +|.+++.++. .+++ ++|+ +|||.+|+|.
T Consensus 401 A~~iv~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~ldp~~y~G~ 449 (465)
T 2qga_B 401 AYEELKQFTR-GKVIDQKIMQEFIKTKCAFLPQDVVDQLL-ELTPATYTGY 449 (465)
T ss_dssp HHHHHHHHHT-TSCCCHHHHHHHHHHHSTTSCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHHHHh-hhhhccCCHHHHHHhchhcCCcchHHHHH-hcCHHHhCCc
Confidence 9999998775 33 3566666553 4777 8898 9999999996
No 26
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.5e-68 Score=547.24 Aligned_cols=388 Identities=18% Similarity=0.154 Sum_probs=302.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHH
Q 014483 2 PEPIVRAFGILKKCAAKVNMEYG-LD------PAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRA 74 (423)
Q Consensus 2 ~~~~~~~~~~ve~A~a~a~~~~g-ip------~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l 74 (423)
+++++++|+++|.||+.++++.| || ++++++|.++++++..+ ++..+.+.. ...+.++ ..++..+
T Consensus 32 d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~~~~~~~~------d~~~~~~~e-~~~~~Dv-~a~e~~l 103 (459)
T 3bhg_A 32 EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDLISNFNES------EAEKIKEFE-KQTNHDV-KAVEYYL 103 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHHHHTCCHH------HHHHHHHHT-TTCSSHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhccc------cHHHHHHHH-HhcCCCh-HHHHHHH
Confidence 46899999999999999999996 73 79999999988654210 111110000 0112334 3467888
Q ss_pred HHHhCc-----cCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcceecccCC
Q 014483 75 AEILGH-----KRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS-RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHT 148 (423)
Q Consensus 75 ~~~~g~-----~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~-~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~ 148 (423)
++.+|+ +.|+| +| +|+|||||++|+++|++++. +. .|.+.|..|+++|.++|++|+|++||||||+
T Consensus 104 ~e~~g~~~~~~~~~~~-iH------~g~SsnDv~~Ta~~L~lr~~-l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 175 (459)
T 3bhg_A 104 QDKFQENEQLKSCVAF-IH------FACTSEDINNLAYALMIKQA-IAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHG 175 (459)
T ss_dssp HHHHTTSTTGGGGGGG-TT------TTCCHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhcccccCchhhhh-hc------CCCCHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 999982 23444 55 69999999999999998665 66 6999999999999999999999999999999
Q ss_pred CCCcCCChhHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCC-cch----HHHHHHHHHHcCCCCCcCCch
Q 014483 149 QDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKK-GFD----VKIASAVAEETSLPFVTAENK 223 (423)
Q Consensus 149 Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~-~~~----~~~~~~la~~LGl~~~~~~n~ 223 (423)
||||||||||||++|+++|.|+++||.+++ .++.||||+|| ++... .|+ ..+.+.+++.|||..++.++
T Consensus 176 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~----~~~~~~GAvGT-~~a~~~~~~~~~~~~~~~~~~~~LGl~~~~~~~- 249 (459)
T 3bhg_A 176 QPATPTTMGKELVNFVARLKRPQQQLAEVL----IPAKFNGAVGN-YNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTT- 249 (459)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHCC----CEECCCCSSSS-CHHHHHHCTTSCHHHHHHHHHHHTTCEECSSCS-
T ss_pred ccceechHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccccccc-ccccccccCcccHHHHHHHHHHHhCCCCCcccc-
Confidence 999999999999999999999999999987 35666669999 33111 122 45778899999998644443
Q ss_pred hHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhh
Q 014483 224 FEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303 (423)
Q Consensus 224 ~da~~~rd~~~e~~~~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~ 303 (423)
++++||++++++++++.++++|+|||+||++|+|. |+.+...|++++|||||||||||+.+|.++++++.+.|..
T Consensus 250 --~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~---~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~l~~~~~ 324 (459)
T 3bhg_A 250 --QIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISL---GYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALF 324 (459)
T ss_dssp --SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEECC------CCSSCCCCCTHHHHHHHHHHHHHHHHH
T ss_pred --chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---cceehccCCCCCCCCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999983 5644334557999999999999999999999999999988
Q ss_pred HHHhhhhcCcccccccchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHH-----HhhcccccHH
Q 014483 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLV-----TSLNPKIGYD 378 (423)
Q Consensus 304 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~-----~~la~~~g~~ 378 (423)
..++......+++++...|...+.++..+..+...+..+ ..++++|+||+++|++|+..+++++ +.|+++ |++
T Consensus 325 ~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~-~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~L~~~-G~~ 402 (459)
T 3bhg_A 325 IHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSV-AKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRY-NEP 402 (459)
T ss_dssp HHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTEEECHHHHHHHHHTCGGGGHHHHHHHHHHT-TCT
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHH-HHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHHh-ChH
Confidence 877776655677888777766666666666666666656 5799999999999999999999987 455555 999
Q ss_pred HHHHHHHHHHHcCC-----CHHHHHHHcCCCC---HHHHhhccCcccccCC
Q 014483 379 NAAAVAKKAHKEGT-----TLKDAALKLGVLN---SEEFDNLVVPEKMIGP 421 (423)
Q Consensus 379 ~a~~~~~~a~~~g~-----~l~e~~~~~~~l~---~~~l~~~~dp~~~~g~ 421 (423)
+||++++++.. |. +|+|++.+.+ ++ .++|+ +|||.+|+|.
T Consensus 403 ~A~~iv~~~~~-~~~~~~~~l~~~l~~l~-~~~~~~~~l~-~~dp~~y~g~ 450 (459)
T 3bhg_A 403 NAYEQLKELTR-GQMIDAENLKKFIKTLS-IPEEAKAELM-KLTPETYTGL 450 (459)
T ss_dssp THHHHHHHHHT-TSCCCHHHHHHHHHTSC-SCHHHHHHHH-HCCGGGCCTT
T ss_pred HHHHHHHHHHh-hcccccccHHHHHHhcC-CCchhHHHHH-hCCHHHHhCc
Confidence 99999998887 44 4777776522 22 46787 9999999996
No 27
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=30.91 E-value=15 Score=21.32 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=11.5
Q ss_pred ccCCCCCcCCChhH
Q 014483 145 RTHTQDATPLTLGQ 158 (423)
Q Consensus 145 rTh~Q~A~P~T~G~ 158 (423)
|+|-|+|.|+.-|.
T Consensus 2 r~Hp~~agp~p~gq 15 (26)
T 1fgl_B 2 RXHPVHAGPIAPGQ 15 (26)
T ss_pred CcCcccCCCCCCCC
Confidence 78999999987663
Done!