RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014483
(423 letters)
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 838 bits (2167), Expect = 0.0
Identities = 371/425 (87%), Positives = 389/425 (91%), Gaps = 2/425 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MPEPIVRAFGI+KK AAKVNMEYG LDP IGKAIMQAA EVAEGKL+DHFPLVVWQTGSG
Sbjct: 32 MPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSG 91
Query: 60 TQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQ+NMNANEVIANRAAEILG GEK VHPNDHVNRSQSSNDTFPT MHIAAA E +SR
Sbjct: 92 TQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSR 151
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK LH SL +KS EFKDIVKIGRTH QDA PLTLGQEFSGY TQVKYG++RV C L
Sbjct: 152 LIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTL 211
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
PR+Y+LAQGGTAVGTGLNTKKGFD KIA+AVAEET LPFVTA NKFEALAAHDAFVE SG
Sbjct: 212 PRLYELAQGGTAVGTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSG 271
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
ALNTVA SLMKIAND+RLLGSGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQ
Sbjct: 272 ALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQ 331
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GNHVAITVGGS GHFELNVFKP+IA LLHS+RLLGDASASF KNCVRGI+ANRERIS
Sbjct: 332 VMGNHVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERIS 391
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
KLLHESLMLVT+LNPKIGYD AAAVAKKAHKEGTTLK+AALKLGVL +EEFD LVVPEKM
Sbjct: 392 KLLHESLMLVTALNPKIGYDKAAAVAKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKM 451
Query: 419 IGPSD 423
GPSD
Sbjct: 452 TGPSD 456
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 819 bits (2118), Expect = 0.0
Identities = 289/423 (68%), Positives = 330/423 (78%), Gaps = 2/423 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++RA +LKK AA+VN E G LD AI+ AA EV GK +DHFPL VWQTGSG
Sbjct: 40 MPRELIRALALLKKAAARVNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEVIANRA+E+LG + G K VHPNDHVN SQSSNDTFPT MHIAA + R
Sbjct: 100 TQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVER 159
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+P L+ L ++L +K+ EF DIVKIGRTH QDATPLTLGQEFSGY Q+++GI+R+ L
Sbjct: 160 LLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAAL 219
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P +Y+LA GGTAVGTGLN GF ++A +AE T LPFVTA NKFEALAAHDA VE SG
Sbjct: 220 PHLYELALGGTAVGTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASG 279
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL T+A SLMKIAND+R L SGPRCGLGE+ LPENEPGSSIMPGKVNPTQCEALTMVCAQ
Sbjct: 280 ALKTLAVSLMKIANDIRWLASGPRCGLGEISLPENEPGSSIMPGKVNPTQCEALTMVCAQ 339
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN A+T GS G+FELNVFKP+IA L S+RLL DA SF +CV GI+ NRERI
Sbjct: 340 VMGNDAAVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIK 399
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL SLMLVT+LNP IGYD AA +AKKAHKEG TLK+AAL+LG L EEFD V PEKM
Sbjct: 400 ELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRWVDPEKM 459
Query: 419 IGP 421
GP
Sbjct: 460 TGP 462
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 806 bits (2085), Expect = 0.0
Identities = 296/420 (70%), Positives = 334/420 (79%), Gaps = 2/420 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++RA G+LKK AA+ N E G LD AI+QAA EV GKL+DHFPLVVWQTGSG
Sbjct: 36 MPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSG 95
Query: 60 TQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQ+NMN NEVIANRA E+LG G K VHPNDHVN SQSSNDTFPT MHIAAA+ R
Sbjct: 96 TQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQER 155
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+P LK L ++L +K+ EFKDIVKIGRTH QDATPLTLGQEFSGY Q+++ I R+ L
Sbjct: 156 LLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAAL 215
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
PR+Y+LA GGTAVGTGLN GF K+A+ +AE T LPFVTA NKFEALAAHDA VE SG
Sbjct: 216 PRLYELALGGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASG 275
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL T+A SLMKIAND+R LGSGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMV AQ
Sbjct: 276 ALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVAAQ 335
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN AIT+ GS+G+FELNVFKP+I LL S+RLL DA SF CV GI+ NRERI+
Sbjct: 336 VMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIA 395
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL SLMLVT+LNP IGYD AA +AKKAHKEG TLK+AAL+LG L EEFD LV PEKM
Sbjct: 396 ELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGLTLKEAALELGYLTEEEFDRLVDPEKM 455
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 756 bits (1955), Expect = 0.0
Identities = 290/423 (68%), Positives = 333/423 (78%), Gaps = 2/423 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP I+RA G+LKK AA+VN + G LDP AI+ AA EV GK +DHFPL VWQTGSG
Sbjct: 39 MPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSG 98
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEVIANRA+E+LG + G K VHPNDHVN SQSSNDTFPT MHIAA + +R
Sbjct: 99 TQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNR 158
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L +K+ EF D+VKIGRTH QDATPLTLGQEFSGY Q+++ ++R+ L
Sbjct: 159 LIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASL 218
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P +Y+LA GGTAVGTGLN F K+A +AE T LPFVTA NKFEALAAHDA VE SG
Sbjct: 219 PHLYELAIGGTAVGTGLNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASG 278
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL T+A SLMKIAND+R LGSGPRCGLGE+ LPENEPGSSIMPGKVNPTQCEALTMV AQ
Sbjct: 279 ALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQ 338
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
VIGN AI GS G+FELNVFKP+IA L S+RLL DA SF +C+ GI+ N ERI
Sbjct: 339 VIGNDAAIAFAGSQGNFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIK 398
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL SLMLVT+LNP IGYD AA +AKKAHKEGTTL++AAL+LG+L+ EEFD LV PEKM
Sbjct: 399 ELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLLSEEEFDKLVDPEKM 458
Query: 419 IGP 421
+GP
Sbjct: 459 VGP 461
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 753 bits (1948), Expect = 0.0
Identities = 253/415 (60%), Positives = 300/415 (72%), Gaps = 1/415 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++RA ++KK AA N E G LD AI+QA EV GKL+D FPL VWQTGSG
Sbjct: 36 MPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSG 95
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
T +NMN NEVIANRA E+LG K+G+ VHPND VN SQSSND FP HIAAA+ RL
Sbjct: 96 TSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERL 155
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
+P L+ L ++L +K+ EF DIVKIGRTH QDA PLTLGQEFSGY Q+ I R+ L
Sbjct: 156 LPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALE 215
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
R+ +L GGTAVGTGLN G+ K+A+ +AE T LPFVTA N FEA AAHDA VE SGA
Sbjct: 216 RLRELNLGGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGA 275
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
L T+A SL KIAND+RLL SGPR GLGE+ LP N+PGSSIMPGKVNP EA+ MV AQV
Sbjct: 276 LKTLAVSLSKIANDLRLLSSGPRAGLGEINLPANQPGSSIMPGKVNPVIPEAVNMVAAQV 335
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
IGN AIT+ GS G ELNVFKP+IA LL S+RLL +A SF CV GI+AN ER +
Sbjct: 336 IGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKE 395
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVV 414
+ SLMLVT+LNP IGY+ AA +AK+A KEG TL++AAL+LG+L EE D ++
Sbjct: 396 YVENSLMLVTALNPHIGYEKAAEIAKEALKEGRTLREAALELGLLTEEELDEILD 450
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 702 bits (1813), Expect = 0.0
Identities = 291/422 (68%), Positives = 336/422 (79%), Gaps = 2/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ AF ILKK AA VN + G LD AI+QAA E+ GKL+DHFPLVVWQTGSG
Sbjct: 37 MPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSG 96
Query: 60 TQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEVIANRA E+LG K G K VHPNDHVN+SQSSNDTFPT MHIAA + ++
Sbjct: 97 TQSNMNVNEVIANRAIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQ 156
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP L+ L +L +KS EF IVKIGRTH QDATPLTLGQEFSGY Q+++G++R+ L
Sbjct: 157 LIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSL 216
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P +Y+LA GGTAVGTGLNT GFD K+A +A+ET LPFVTA NKFEALAAHDA VE G
Sbjct: 217 PHLYELAIGGTAVGTGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHG 276
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL T+AASLMKIAND+R LGSGPRCGLGEL +PENEPGSSIMPGKVNPTQCEALTMVC Q
Sbjct: 277 ALKTLAASLMKIANDIRWLGSGPRCGLGELFIPENEPGSSIMPGKVNPTQCEALTMVCVQ 336
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN I GS G+FELNVFKP+I L S+RLL DA SF +CV GI+ N+ERI
Sbjct: 337 VMGNDATIGFAGSQGNFELNVFKPVIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQ 396
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ SLMLVT+LNP IGYDNAA +AKKAHKEG TLK+AAL+LG+L+ EEFD VVPE+M
Sbjct: 397 QLLNNSLMLVTALNPHIGYDNAAKIAKKAHKEGITLKEAALELGLLSEEEFDEWVVPEQM 456
Query: 419 IG 420
+G
Sbjct: 457 VG 458
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 530 bits (1368), Expect = 0.0
Identities = 194/418 (46%), Positives = 263/418 (62%), Gaps = 3/418 (0%)
Query: 6 VRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA ++KK AA N E G LD AI+ A E+ GKL+D F + V Q G+GT +NM
Sbjct: 48 IRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNM 107
Query: 65 NANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 123
NANEVIANRA E+LGH++GE + VHPNDHVN SQS+ND +PT + IA + +L+ L
Sbjct: 108 NANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLR-KLLDAL 166
Query: 124 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ 183
+ L + +K+ EF DI+K+GRT QDA P+TLGQEF Y + R+ + +
Sbjct: 167 EQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLRE 226
Query: 184 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 243
+ G TA+GTGLN G+ + +AE T LP V AE+ EA AFVE SGAL +
Sbjct: 227 VNLGATAIGTGLNAPPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRL 286
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A L KI ND+RLL SGPR GL E+ LP + GSSIMPGKVNP E + VC QVIGN
Sbjct: 287 AVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFQVIGND 346
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
+T+ G ELNV +P+IA L S+ +L +A + + C+ GI AN ER + +
Sbjct: 347 TTVTMAAEAGQLELNVMEPVIAYNLFESISILTNACRTLREKCIDGITANEERCREYVEN 406
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 421
S+ +VT+LNP IGY+NAA +AK+A + G ++++ L+ G+L EE D+++ PE M P
Sbjct: 407 SIGIVTALNPYIGYENAAEIAKEALETGKSVRELVLERGLLTEEELDDILSPENMTHP 464
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 518 bits (1335), Expect = 0.0
Identities = 240/423 (56%), Positives = 294/423 (69%), Gaps = 2/423 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A ++KK AA+VN G L I + I QAA EV +G+ +D FPLVVWQTGSG
Sbjct: 38 MPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSG 97
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEVIA RA E+ G+ RG K VHPNDHVNRSQSSND FPT MHIAAA + +
Sbjct: 98 TQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQ 157
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+P + L L +S +VK GRTH DATP+T GQE S + Q+ Y + L
Sbjct: 158 LLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAAL 217
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LAQGGTAVGTGLN GF IA+ +A + LPFVTA NKF ALA H+ V SG
Sbjct: 218 PAVCELAQGGTAVGTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSG 277
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL T+A +LMKIAND+RLLGSGPR GL E+ LP NEPGSSIMPGKVNPTQCEAL+M+ Q
Sbjct: 278 ALKTLAVALMKIANDLRLLGSGPRAGLAEVRLPANEPGSSIMPGKVNPTQCEALSMLACQ 337
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN I S GH +LNVFKP+I LL S+RLL D +F+++CV G++ + E+++
Sbjct: 338 VMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMA 397
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
L LMLVT+LNP IGYD AA +AKKA+ EGTTL++AAL LG L E+FD V PE M
Sbjct: 398 AHLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTTLREAALALGYLTDEQFDAWVRPENM 457
Query: 419 IGP 421
+
Sbjct: 458 LEA 460
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 516 bits (1332), Expect = 0.0
Identities = 194/412 (47%), Positives = 267/412 (64%), Gaps = 3/412 (0%)
Query: 3 EPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 61
++RA ++KK AA N E G LD +AI++A E+ GKL+D F + V Q G+GT
Sbjct: 38 PELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTS 97
Query: 62 SNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
+NMNANEVIANRA E+LGH++GE + VHPNDHVN SQS+ND +PT + +A + +L+
Sbjct: 98 TNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLR-KLL 156
Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
L L + +K+ EF D++K+GRT QDA P+TLGQEF Y T +K R+ R
Sbjct: 157 DALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARER 216
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
+ ++ GGTA+GTG+N G+ + ++E T LP AEN +A DAFVE SGAL
Sbjct: 217 LREVNLGGTAIGTGINAPPGYIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGAL 276
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
+A L KIAND+RLL SGPR GLGE+ LP +PGSSIMPGKVNP E + V QVI
Sbjct: 277 KRLAVKLSKIANDLRLLSSGPRAGLGEINLPAVQPGSSIMPGKVNPVIPEVVNQVAFQVI 336
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
GN + IT+ G ELNVF+P+IA LL S+ +L +A + + C+ GI AN ER +
Sbjct: 337 GNDLTITMAAEAGQLELNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREY 396
Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNL 412
+ S+ +VT+LNP IGY+ AA +AK+A + G ++++ L+ G+L EE D +
Sbjct: 397 VENSIGIVTALNPYIGYEAAAEIAKEALETGRSVRELVLEEGLLTEEELDEI 448
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 492 bits (1269), Expect = e-173
Identities = 197/421 (46%), Positives = 268/421 (63%), Gaps = 3/421 (0%)
Query: 3 EPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 61
++RAF +KK AA N + G L I +AI+QA E+ GKL+D F + Q G+GT
Sbjct: 43 PELIRAFAQVKKAAALANADLGLLPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTS 102
Query: 62 SNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
+NMNANEVIANRA E+LG ++G+ V PNDHVN +QS+ND FPT + IAA L+
Sbjct: 103 TNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLL-EGLL 161
Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
+ L + K+ EF ++K+GRT QDA P+TLGQEFS Y +K R+
Sbjct: 162 AAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREH 221
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
+Y++ GGTAVGTGLN + ++ +A T LP V AE+ +A DAFVE SGAL
Sbjct: 222 LYEVNLGGTAVGTGLNADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGAL 281
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
A +L KIAND+RLL SGPR GLGE+ LP +PGSSIMPGKVNP E + + QVI
Sbjct: 282 KVCAVNLSKIANDLRLLSSGPRTGLGEINLPAVQPGSSIMPGKVNPVMPEVVNQIAFQVI 341
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
GN V IT+ G ELNV +P+IA LL S+ +L +A +F NCV+GI+AN ER +
Sbjct: 342 GNDVTITLAAEAGQLELNVMEPVIAFNLLESISILTNACRAFTDNCVKGIEANEERCKEY 401
Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
+ +S+ + T+LNP IGY+ AA +AK+A G ++++ AL+ G+L+ EE D ++ P +M
Sbjct: 402 VEKSVGIATALNPHIGYEAAARIAKEAIATGRSVRELALENGLLSEEELDLILDPFRMTH 461
Query: 421 P 421
P
Sbjct: 462 P 462
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 472 bits (1217), Expect = e-165
Identities = 194/418 (46%), Positives = 267/418 (63%), Gaps = 3/418 (0%)
Query: 6 VRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA ++KK AA N E G L I AI++A E+ +GK +D F + V+Q G+GT +NM
Sbjct: 47 IRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNM 106
Query: 65 NANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 123
NANEVIANRA E+LGH++GE + +HPNDHVN SQS+ND +PT IA ++ +LI L
Sbjct: 107 NANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAV-YKSLRKLIDAL 165
Query: 124 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ 183
+ L + K+ EF DI+K+GRT QDA P+TLGQEF + +K I R+ + +
Sbjct: 166 EDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLE 225
Query: 184 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 243
+ GGTA+GTG+N KG+ + +AE T LP V AEN EA AFV SGAL +
Sbjct: 226 VNLGGTAIGTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRL 285
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
A L KI ND+RLL SGPR GL E+ LP + GSSIMPGKVNP E + VC +VIGN
Sbjct: 286 AVKLSKICNDLRLLSSGPRAGLNEINLPAVQAGSSIMPGKVNPVIPEVVNQVCFKVIGND 345
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHE 363
IT+ G +LNV +P+IA L S+ +L +A + + C+ GI AN ER + +
Sbjct: 346 TTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVEN 405
Query: 364 SLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 421
S+ +VT+LNP IGY+NAA +AK+A + G ++++ L+ G+L EE D+++ PE M P
Sbjct: 406 SIGIVTALNPYIGYENAAIIAKEALETGKSVREVVLERGLLTEEELDDILSPENMTKP 463
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 405 bits (1042), Expect = e-139
Identities = 172/423 (40%), Positives = 248/423 (58%), Gaps = 4/423 (0%)
Query: 3 EPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGT 60
VR ++KK AA N E G + +I AI+ A E+ GK +D FP+ V+Q G+GT
Sbjct: 40 PEFVRGMVMVKKAAALANKELGTIPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGT 99
Query: 61 QSNMNANEVIANRAAEILGHKRGEKIV-HPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
NMN NEVIAN A E++GH++GE +PNDHVN+SQS+ND +PT IA + +L
Sbjct: 100 SVNMNTNEVIANLALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAV-YSSLIKL 158
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
+ + L + K+ EF DI+K+GRT QDA P+TLGQEF ++ ++ + +
Sbjct: 159 VDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAE 218
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+ ++ G TA+GTGLNT + + +AE T LP V AEN EA + A+V GA
Sbjct: 219 LLLEVNLGATAIGTGLNTPPEYSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGA 278
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
L +A + KI ND+RLL SGPR GL E+ LPE + GSSIMP KVNP E + VC +V
Sbjct: 279 LKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKV 338
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
IGN +T+ G +LNV +P+I + S+ +L +A + CV GI AN+E
Sbjct: 339 IGNDTTVTLAAEAGQLQLNVMEPVIGQAMFESIHILTNACYNLTDKCVNGITANKEICEG 398
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
+ S+ +VT LNP IG+ N V K + G ++++ L+ G+L EE D++ E ++
Sbjct: 399 YVFNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLEKGLLTEEELDDIFSVENLM 458
Query: 420 GPS 422
P+
Sbjct: 459 HPA 461
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 355 bits (911), Expect = e-119
Identities = 175/421 (41%), Positives = 264/421 (62%), Gaps = 3/421 (0%)
Query: 3 EPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 61
E +++AF I+KK AA N + G L+ G AI +AAQE+ +GK +DHF + Q G+GT
Sbjct: 49 EGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEAAQEILDGKWHDHFIVDPIQGGAGTS 108
Query: 62 SNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
NMNANEVIANRA E+LG ++G+ + PN HVN +QS+ND FPT +HIA L+
Sbjct: 109 MNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALE-GLL 167
Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
+ +H+ K+ +F ++K+GRTH QDA P+ LGQEF Y+ ++ + R+
Sbjct: 168 QTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQH 227
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
+Y++ G TAVGTGLN + + +A + LP V AE+ +A DA+ E S AL
Sbjct: 228 LYEVNMGATAVGTGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAAL 287
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
++ KIAND+RL+ SGPR GL E++LP +PGSSIMPGKVNP E + + QVI
Sbjct: 288 KVCMMNMSKIANDLRLMASGPRVGLAEIMLPARQPGSSIMPGKVNPVMPEVINQIAFQVI 347
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
GN I + G ELNV +P++ LL S+ ++ + +F NC++GI+AN +R+ +
Sbjct: 348 GNDHTICLASEAGQLELNVMEPVLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEY 407
Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
+ +S+ ++T++NP IGY+ AA VAK+A G ++++ +K GVL+ E+ + ++ P +M
Sbjct: 408 VEKSVGIITAVNPHIGYEAAARVAKEAIATGQSVRELCVKNGVLSQEDLELILDPFEMTH 467
Query: 421 P 421
P
Sbjct: 468 P 468
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 345 bits (886), Expect = e-117
Identities = 147/298 (49%), Positives = 177/298 (59%), Gaps = 16/298 (5%)
Query: 6 VRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNM 64
++ LKK AAK N+ AI++A EVAE GK +D FPL V Q GSGT NM
Sbjct: 29 IKGLAALKKAAAKANVLL---KEEAAAIIKALDEVAEEGKADDAFPLKVIQEGSGTAVNM 85
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
N NEVI E+LG VHPND V+ QSSND PT + +A + + L+P L
Sbjct: 86 NLNEVIG----ELLGQL-----VHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALG 136
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM-YQ 183
L ++L K+ EF D+VK GRTH QDATP+TLGQE SGY + ++R+ LPR+ +
Sbjct: 137 QLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLERLKQLLPRILVE 196
Query: 184 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 243
GGTAVGTGLN F +A + T LP V A N FEA + DA VE SGAL +
Sbjct: 197 PLGGGTAVGTGLNADPEFAELLAKELGFFTGLP-VPAPNSFEATSDRDAVVEFSGALALL 255
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
A L K AND+RLL SGP G EL LPE EPGSSIMPGKVNP Q E L +V G
Sbjct: 256 ATHLSKFANDLRLLSSGP-FGFVELSLPEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 345 bits (887), Expect = e-117
Identities = 121/350 (34%), Positives = 165/350 (47%), Gaps = 27/350 (7%)
Query: 6 VRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
+RA ++K AK E G L +AI+ A E+ EG D Q GSGT M
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQV----EQEGSGTHDVM 56
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
EV+A RA E+ N + S++ A + L+P LK
Sbjct: 57 AVEEVLAERAGEL------------NGGYVHTGRSSNDIVDTALRLALRDALDILLPALK 104
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
L ++L +K+ E KD V GRTH QDA P TLG E + + +++ ++R+ L R+ L
Sbjct: 105 ALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVL 164
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 244
GG AVGTG N ++A + F A N +A++ D VE AL +A
Sbjct: 165 PLGGGAVGTGANAPPIDRERVAELLGF-----FGPAPNSTQAVSDRDFLVELLSALALLA 219
Query: 245 ASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
SL KIAND+RLL SG GE+ LP+ +PGSSIMP KVNP E + + +VIGN
Sbjct: 220 VSLSKIANDLRLLSSG---EFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNL 276
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQAN 353
A+ G E NV P+ L S LL A G++ N
Sbjct: 277 AALLEALKGGPLEDNVDSPVEREALPDSFDLLDAALRLLTGVL-EGLEVN 325
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 190 bits (486), Expect = 1e-58
Identities = 86/279 (30%), Positives = 109/279 (39%), Gaps = 62/279 (22%)
Query: 64 MNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNL 123
EV+A RA E+ G G +VH S++ T A + L+P L
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVH-------KGRSSNDIGTTALRLALRDALDDLLPLL 66
Query: 124 KVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQ 183
K L ++L K+ K V GRTH QDA P+TLG E + + ++R+
Sbjct: 67 KALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERL--------- 117
Query: 184 LAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTV 243
+AVAE AL
Sbjct: 118 ---------------------EEAAVAE------------------------ALDALALA 132
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNH 303
AA L KIA D+RLL SG LGE LP +PGSSIMP KVNP E + + VIGN
Sbjct: 133 AAHLSKIAEDLRLLLSGEFGELGEPFLP-GQPGSSIMPQKVNPVAAELVRGLAGLVIGNL 191
Query: 304 VAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASF 342
VA+ G N P + L SL LL DA
Sbjct: 192 VAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus. Fumarase C
catalyzes the stereo-specific interconversion of
fumarate to L-malate as part of the Kreb's cycle. The
full-length protein forms a tetramer with visible
globular shape. FumaraseC_C is the C-terminal 65
residues referred to as domain 3. The core of the
molecule consists of a bundle of 20 alpha-helices from
the five-helix bundle of domain 2. The projections from
the core of the tetramer are generated from domains 1
and 3 of each subunit. FumaraseC_C does not appear to be
part of either the active site or the activation site
but is helical in structure forming a little bundle.
Length = 55
Score = 97.9 bits (245), Expect = 2e-25
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 367 LVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 421
LVT+LNP IGYD AA +AK+A K G TL++ AL+LG+L EE D ++ PE M GP
Sbjct: 1 LVTALNPHIGYDKAAKIAKEALKTGRTLREVALELGLLTEEELDEILDPENMTGP 55
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 98.3 bits (246), Expect = 1e-22
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 33/286 (11%)
Query: 96 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 155
SQ NDT + + A++ ++P+L L ++L ++E KD +GRTH Q A P T
Sbjct: 89 SQDINDT-ALALQLRDALD---IILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTT 144
Query: 156 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLN-TKKGFDVKIASAVAEETS 214
G++F+ + ++ ++R+ R+ G AVGT + KG +V VAE+
Sbjct: 145 FGKKFAVWAAELLRHLERLEEARERVLVGGISG-AVGTHASLGPKGPEV--EERVAEKLG 201
Query: 215 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--E 272
L + E D E AL +A +L KIA D+RLL R +GE+ P +
Sbjct: 202 LKVPPITTQIE---PRDRIAELLSALALIAGTLEKIATDIRLLQ---RTEIGEVEEPFEK 255
Query: 273 NEPGSSIMPGKVNPTQCEALT----MVCAQVIGNHVAITV----GGSNGHFELNVFKPMI 324
+ GSS MP K NP E + +V A + S+ E N+ P
Sbjct: 256 GQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENLVQWHERDLSDSSVERNIL-PDA 314
Query: 325 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTS 370
L +L L + + G+ N ER+ + L + L+ S
Sbjct: 315 FLLLDAALSRL--------QGLLEGLVVNPERMRRNLDLTWGLILS 352
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 90.4 bits (225), Expect = 1e-19
Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 30/321 (9%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P+LK L +L ++E KD +GRTH Q A P T G++F+ + ++ ++R+
Sbjct: 117 ILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAE 176
Query: 179 PRMYQLAQGGTAVGTGLNTK-KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237
R+ GG AVGT G +V VAE+ L + D E
Sbjct: 177 ERIIVGKIGG-AVGTLAALGDLGAEV--EERVAEKLGLKPAPISTQVS---PRDRIAEFF 230
Query: 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALT-- 293
AL +A SL K A D+RLL R +GE+ P + + GSS MP K NP E +T
Sbjct: 231 SALALLAGSLEKFARDIRLLQ---RTEVGEVEEPFAKGQVGSSAMPHKRNPIDSENVTGL 287
Query: 294 --MVCAQVIGNHVAITV----GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCV 347
+ A V + + ++ E + + +L L + E N
Sbjct: 288 ARVARALVSTLLENLVLWHERDLTDSSVERVILPDAFIA-ADGALNRLLNVLEGLEVNPE 346
Query: 348 RGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAV----AKKAHKEGTTLKDAALK--- 400
R ++ N + L+ +++ +G + A + A KA ++G + L
Sbjct: 347 R-MRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLELLLADER 405
Query: 401 -LGVLNSEEFDNLVVPEKMIG 420
L+ EE L+ P +G
Sbjct: 406 VTKYLSEEELLELLDPANYLG 426
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 88.1 bits (219), Expect = 6e-19
Identities = 80/319 (25%), Positives = 128/319 (40%), Gaps = 50/319 (15%)
Query: 130 LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGT 189
L + +D +GRTH Q A P+T G + + + +++ +R+ PR+ + GG
Sbjct: 129 LARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGG- 187
Query: 190 AVGTGLN-TKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLM 248
A GT + +G V A+A E L A D E + L + +L
Sbjct: 188 AAGTLASLGDQGLAV--QEALAAELGL----GVPAIPWHTARDRIAELASFLALLTGTLG 241
Query: 249 KIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 306
KIA DV LL + +GE+ P + GSS MP K NP CE + A+ + A+
Sbjct: 242 KIARDVYLLM---QTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIV-ALARRVPGLAAL 297
Query: 307 TV---------GGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
+ H E P I +L + + G++ N +R+
Sbjct: 298 LLDAMVQEHERDAGAWHAEWIAL-PEIFLLASGALEQA--------EFLLSGLEVNEDRM 348
Query: 358 SKLLH--------ESLMLVTSLNPKIGYDNA----AAVAKKAHKEGTTLKDAALK----L 401
L E++M+ L PK+G A +A +EG L++ L+
Sbjct: 349 RANLDLTGGLILSEAVMMA--LAPKLGRQEAHDLVYEACMRAVEEGRPLREVLLEDPEVA 406
Query: 402 GVLNSEEFDNLVVPEKMIG 420
L+ EE D L+ P +G
Sbjct: 407 AYLSDEELDALLDPANYLG 425
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 81.2 bits (201), Expect = 1e-16
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P LK L + L +VE+KD V +GRTH Q A P TLG++F+ + D + L
Sbjct: 116 ILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALW-------ADEMKRQL 168
Query: 179 PRMYQLAQGGT------AVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDA 232
R+ Q + AVGT + ++ V E L V + E D
Sbjct: 169 ERLLQAKERIKVGGISGAVGTHAAAYPLVE-EVEERVTEFLGLKPVPISTQIE---PRDR 224
Query: 233 FVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCE 290
E AL +A +L K A D+RLL R E+ + + GSS MP K NP E
Sbjct: 225 HAELLDALALLATTLEKFAVDIRLL---QRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFE 281
Query: 291 ALT 293
+
Sbjct: 282 NVC 284
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 79.6 bits (197), Expect = 4e-16
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 74/339 (21%)
Query: 123 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 182
LK L L K+ E K+ V IGRTH Q A P T G F+ + ++++ ++R+ PR+
Sbjct: 126 LKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRV- 184
Query: 183 QLAQGGTAVGT----GLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
+ Q AVGT G +KG +++ V E L V N+ H F+
Sbjct: 185 CVGQMTGAVGTQAAFG---EKGIEIQ--KRVMEILGLKPVLISNQVIQRDRHAEFMMF-- 237
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQCEALTMVC 296
L +A +L KI ++R L R +GE+ + + GSS MP K NP E +C
Sbjct: 238 -LANIATTLDKIGLEIRNL---QRTEIGEVEEEFGKKQVGSSTMPHKRNPITSE---QIC 290
Query: 297 --AQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASAS---FEKNCV---- 347
A+V+ ++V +P + + L R L ++S F ++CV
Sbjct: 291 GLARVVRSNV----------------EPALLNNPLWDERDLTNSSCERIIFPESCVLTDH 334
Query: 348 ---------RGIQANRERISK---LLH-----ESLMLVTSLNPK-IGYDNAAAV----AK 385
G++ N E I + L E++M+ L + +G A + A
Sbjct: 335 ILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMI--ELAKRGMGRQEAHELVRQAAM 392
Query: 386 KAHKEGTTLKDAALK----LGVLNSEEFDNLVVPEKMIG 420
KAH+EG LK+ L+ + L EE + L+ PE IG
Sbjct: 393 KAHEEGRHLKEVLLEDEEVMKYLTEEELEELLDPETYIG 431
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 76.1 bits (188), Expect = 4e-15
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 20/200 (10%)
Query: 99 SNDTFPTVMHIAAAM---ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 155
S+D V+ A A+ E ++ +LK L L K++E KD V +GRTH A P T
Sbjct: 91 SSD----VVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTT 146
Query: 156 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSL 215
G +F+ + + K ++R+ R+ + + AVGT N ++ VAE+ L
Sbjct: 147 FGLKFALWYAEFKRHLERLKEARERI-LVGKISGAVGTYAN----LGPEVEERVAEKLGL 201
Query: 216 PFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--EN 273
+ + D E L +A++L KIA ++R L R + E+ P +
Sbjct: 202 KPEPISTQ---VIQRDRHAEYLSTLALIASTLEKIATEIRHL---QRTEVLEVEEPFSKG 255
Query: 274 EPGSSIMPGKVNPTQCEALT 293
+ GSS MP K NP E +
Sbjct: 256 QKGSSAMPHKRNPILSENIC 275
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 70.3 bits (172), Expect = 5e-13
Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 98 SSNDTFPTVMHIAAAMETN---SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 154
+SND T A A++ + S + ++K L +L E+KD +GRTH Q A+P+
Sbjct: 101 TSNDINDT----ATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPI 156
Query: 155 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNT-KKGFDVK-----IASA 208
T G +F+ Y ++ +DR+ R + G VGTG K D++ I
Sbjct: 157 TFGLKFAVYLDEMSRHLDRLTEMGDRAFAGKVLG-PVGTGAALGKDALDIQNRVMEILGI 215
Query: 209 VAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGEL 268
+E S V D ++E +N ++ +L KIA ++R L + E
Sbjct: 216 YSEIGSTQIVN----------RDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEY 265
Query: 269 ILPENEPGSSIMPGKVNPTQCEALTMVC 296
E++ GSS MP KVNP E + +
Sbjct: 266 FDEESQVGSSSMPSKVNPINSENVVSLS 293
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 66.6 bits (163), Expect = 6e-12
Identities = 99/361 (27%), Positives = 147/361 (40%), Gaps = 70/361 (19%)
Query: 96 SQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLT 155
SQ DT V+ + A++ L P+L L ++L + + + +GRT Q A P+T
Sbjct: 108 SQDIIDT-GLVLQLRDALD---LLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVT 163
Query: 156 LGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAVAEET 213
LG +F+G+ + R+ PR L Q G A GT L + V A A+A E
Sbjct: 164 LGLKFAGWLDALLRHRQRLAALRPRALVL-QFGGAAGTLASLGE-QALPV--AQALAAEL 219
Query: 214 SLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 270
L AL H D E + AL +A +L KIA DV LL + +GE+
Sbjct: 220 QLA-------LPALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLL---MQTEVGEVFE 269
Query: 271 P--ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMI---- 324
P + GSS MP K NP C A+ + G + T +F M
Sbjct: 270 PAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPG--LVAT-----------LFAAMPQEHE 316
Query: 325 -ASGLLHS--------LRLLGDASASFEKNCVRGIQANRERISK--------LLHESLML 367
A G H+ L A A + V G++ + R+ +L E++ML
Sbjct: 317 RALGGWHAEWDTLPELACLAAGALAQMAQ-IVEGLEVDAARMRANLDLTHGLILAEAVML 375
Query: 368 VTSLNPKIGYDNAAAV----AKKAHKEGTTLKDA----ALKLGVLNSEEFDNLVVPEKMI 419
L +IG +A + +K+A EG L+D L+ D L+ P +
Sbjct: 376 A--LADRIGRLDAHHLVEQASKRAVAEGRHLRDVLAEDPQVSAHLSPAALDRLLDPAHYL 433
Query: 420 G 420
G
Sbjct: 434 G 434
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 65.8 bits (161), Expect = 1e-11
Identities = 65/277 (23%), Positives = 104/277 (37%), Gaps = 33/277 (11%)
Query: 32 AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPND 91
+ + +E EG + + I + +G G K+
Sbjct: 59 GLNELKEEGREGPFILDPDD------------EDIHMAIERELIDRVGEDLGGKL----- 101
Query: 92 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 151
H RS+ ND T + + + L L L ++L + + + + G TH Q A
Sbjct: 102 HTGRSR--NDQVATDLRLYLR-DHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRA 158
Query: 152 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVA 210
P+TL Y + +R+ L R+ G A+ GTG + + +A
Sbjct: 159 QPITLAHHLLAYAEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREY-------LA 211
Query: 211 EETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELIL 270
E VT EN +A++ D +E + L + A D+ L +G G + L
Sbjct: 212 ELLGFDAVT-ENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGE---FGFVEL 267
Query: 271 P-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 306
P E GSSIMP K NP E + +V GN +
Sbjct: 268 PDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGM 304
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 59.0 bits (143), Expect = 1e-09
Identities = 65/207 (31%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 92 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 151
+V+R +S D T + + L+ +L L ++L + +D GRT Q A
Sbjct: 92 YVHRGATSQDVIDTSLMLQLRDAL-DLLLADLGRLADALADLAARHRDTPMTGRTLLQQA 150
Query: 152 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGT--GLNTKKGFDVKIASAV 209
P T G + +G+ V DR+ R L GG A GT L T+ G +A+A+
Sbjct: 151 VPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGG-AAGTLAALGTRGG---AVAAAL 206
Query: 210 AEETSLPFVTAENKFEALAAH---DAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLG 266
A LP AL H D E AL VA +L KIA D+ LL + +G
Sbjct: 207 AARLGLP-------LPALPWHTQRDRIAEFGSALALVAGALGKIAGDIALLS---QTEVG 256
Query: 267 ELILPENEP-GSSIMPGKVNPTQCEAL 292
E+ E GSS MP K NP L
Sbjct: 257 EVF--EAGGGGSSAMPHKRNPVGAALL 281
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 56.5 bits (137), Expect = 1e-08
Identities = 86/362 (23%), Positives = 132/362 (36%), Gaps = 58/362 (16%)
Query: 68 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAM-----ETNSRLIPN 122
I R E +G G K+ H RS+ ND +A + + L+
Sbjct: 87 TAIEARLIERIGDV-GGKL-----HTGRSR--ND------QVATDLRLWLRDKLLELLEL 132
Query: 123 LKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMY 182
+++L +L + E + V G TH Q A P+T Y + I+R+ L R+
Sbjct: 133 IRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVN 192
Query: 183 QLAQG-GTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 241
G G GT + AE VT N +A++ D +E A
Sbjct: 193 VSPLGAGALAGTPFPIDRER-------TAELLGFDAVT-RNSLDAVSDRDFILEFLSAAA 244
Query: 242 TVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVI 300
+ L ++A D+ L S G + LP+ GSSIMP K NP E + +VI
Sbjct: 245 LIMVHLSRLAEDLILWSSPE---FGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVI 301
Query: 301 GNHVAITVGGSNG----HFELNVFKPMI---ASGLLHSLRLLGDASASFEKNCVRGIQAN 353
G + + +L K + L SLR+L V G+ N
Sbjct: 302 GALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAG--------MVSGLTVN 353
Query: 354 RERISKLLHESLMLVTSLN--------P-KIGYDNAAAVAKKAHKEGTTLKDAALKLGVL 404
+ER+ + T L P + ++ ++A + G L D L L L
Sbjct: 354 KERMREAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLAD--LSLEEL 411
Query: 405 NS 406
S
Sbjct: 412 QS 413
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 54.1 bits (131), Expect = 6e-08
Identities = 71/285 (24%), Positives = 110/285 (38%), Gaps = 33/285 (11%)
Query: 98 SSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLG 157
S ND T + + + L+ L L +L ++ E D + G TH Q A P+T G
Sbjct: 86 SRNDQVATDLRLYL-RDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFG 144
Query: 158 QEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAEETSLP 216
Y ++ ++R+ R+ G A GT + AE L
Sbjct: 145 HYLLAYAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDRER-------TAEL--LG 195
Query: 217 F--VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN- 273
F T EN +A++ D +E A + L ++A D+ L + G + LP+
Sbjct: 196 FDGPT-ENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEF---GFVELPDAY 251
Query: 274 EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGG--SNGHFELNVFKPMI---AS 326
GSSIMP K NP E + +VIG + T+ G + +L K +
Sbjct: 252 STGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVD 311
Query: 327 GLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSL 371
L+ SLRLL + + N ER+ + T L
Sbjct: 312 TLIASLRLLTG--------VISTLTVNPERMREAAEAGFSTATDL 348
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 53.2 bits (128), Expect = 1e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 13/193 (6%)
Query: 118 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 177
+ +K L +L + + D+V G TH Q A P+ L + Q++ R++ C
Sbjct: 141 VIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDC 200
Query: 178 LPRMYQLAQGGTAV-GTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVET 236
PR+ G A+ GTGL + A + + N +A++ D +E
Sbjct: 201 RPRVNFCPLGSCALAGTGLPIDRFM---TAKDLGFTAPMR-----NSIDAVSDRDFVLEF 252
Query: 237 SGALNTVAASLMKIANDVRLLGSGPRCGLGELILPEN-EPGSSIMPGKVNPTQCEALTMV 295
A + A L ++ + L S G + + GSSIMP K NP E +
Sbjct: 253 LFANSITAIHLSRLGEEWVLWASEE---FGFVTPSDAVSTGSSIMPQKKNPDPMELVRGK 309
Query: 296 CAQVIGNHVAITV 308
A+VIG+ V +
Sbjct: 310 SARVIGDLVTVLA 322
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 53.0 bits (128), Expect = 1e-07
Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 44/198 (22%)
Query: 107 MHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ 166
+ I A N ++P LK + +SL + E+ D+ + RTH Q ATP TLG+E + +
Sbjct: 111 LMIKEAR--NEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFV-- 166
Query: 167 VKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-- 215
Y ++R L ++ L + AVG F+ + + +E TSL
Sbjct: 167 --YRLERQYKQLKQIEILGKFNGAVGN-------FNAHLVAYPDVDWRKFSEFFVTSLGL 217
Query: 216 ---PFVTA-ENKFEALAAHDAFVETSGAL---NTVAASLMKIANDVRLLGSGPRCGLGEL 268
P+ T E HD E AL NT+ L+ + D+ S G +
Sbjct: 218 TWNPYTTQIEP-------HDYIAELFDALARINTI---LIDLCRDIWGYIS---LGYFKQ 264
Query: 269 ILPENEPGSSIMPGKVNP 286
+ + E GSS MP KVNP
Sbjct: 265 KVKKGEVGSSTMPHKVNP 282
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 50.8 bits (122), Expect = 7e-07
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 30/187 (16%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
++P L + + L ++E+KD+ +G TH Q A T+G+ + + + +
Sbjct: 115 ILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLR 174
Query: 179 PRM-YQLAQGGTAVGTG---LNTKKGFDVKIAS---AVAEETSLPFV------TAENKFE 225
+ ++ +G GT L+ +G K+ + V ++ V T K +
Sbjct: 175 DDLRFRGVKG--TTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKVD 232
Query: 226 ALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGK 283
++ AL+++ A+ KIA D+RLL L E+ P + + GSS MP K
Sbjct: 233 --------IDVLNALSSLGATAHKIATDIRLLA-----NLKEVEEPFEKGQIGSSAMPYK 279
Query: 284 VNPTQCE 290
NP + E
Sbjct: 280 RNPMRSE 286
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 50.8 bits (122), Expect = 8e-07
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+ L+ L ++ ++ E ++ V IGR+H A P+T G + +G+ + +R + L
Sbjct: 113 LLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRER-LVRL 171
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
+ Q AVGT NT D ++ + ++ L TA + + H +V+T
Sbjct: 172 REDIAVGQISGAVGTYANT----DPRVEAITCQKLGLKPDTASTQVISRDRHAEYVQT-- 225
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGEL--ILPENEPGSSIMPGKVNPTQCEALTMVC 296
L V ASL + A ++R L R + E+ + + GSS MP K NP + E L+ +
Sbjct: 226 -LALVGASLERFATEIRNL---QRTDVLEVEEYFAKGQKGSSAMPHKRNPIRSERLSGL- 280
Query: 297 AQVIGNHV 304
A+V+ ++
Sbjct: 281 ARVLRSYA 288
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 47.7 bits (114), Expect = 3e-06
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 23/200 (11%)
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
L +A SL K AN++RLL E + + GSS MP K NP E +T A+
Sbjct: 22 VLALIATSLEKFANEIRLL-QRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERIT-GLAR 79
Query: 299 VIGNHVAITVGGSNGHFELNVF-KPM--IASGLLHSLRLLGDASASFEKNCVRGIQANRE 355
V+ +++ + E ++ IA L + L D + N + + E
Sbjct: 80 VLRSYLVTALENVPLWHERDLSHSSAERIA--LPDAF-LALDYILNRFVNILENLVVFPE 136
Query: 356 RISKLLHESLMLVTSLNP-----KIGYDNAAA------VAKKAHKEGTTLKDAALK---- 400
I + L ++L + + + G A A +A K L++
Sbjct: 137 NIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEADERF 196
Query: 401 LGVLNSEEFDNLVVPEKMIG 420
L EE D L PE +G
Sbjct: 197 TKQLTKEELDELFDPEAFVG 216
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 48.0 bits (115), Expect = 5e-06
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
L+ +L + +L ++ E KD IGR+H A P T G + + + + +R++
Sbjct: 116 LLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAR 175
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAA-------HD 231
+ A G AVGT N D ++ VA++ L K E ++ H
Sbjct: 176 EEIATCAISG-AVGTFAN----IDPRVEEHVAKKLGL-------KPEPVSTQVIPRDRHA 223
Query: 232 AFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP--ENEPGSSIMPGKVNPTQC 289
F T L +A+S+ ++A ++R L R + E + GSS MP K NP
Sbjct: 224 MFFAT---LGVIASSIERLAIEIRHL---QRTEVLEAEEFFSPGQKGSSAMPHKRNPVLT 277
Query: 290 EALT----MVCAQVI 300
E LT +V + V+
Sbjct: 278 ENLTGLARLVRSYVV 292
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 46.9 bits (111), Expect = 1e-05
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 24/226 (10%)
Query: 96 SQSSNDTFPTVMHIA-------AAMETNS------RLIPNLKVLHNSLHSKSVEFKDIVK 142
SQ + F + MHI M S RL+ + +L S+ + + K+ +
Sbjct: 99 SQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIM 158
Query: 143 IGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFD 202
THTQ A P T G YT + + R + + + Y+L L+T F
Sbjct: 159 PAYTHTQPAQPTTFGH----YTLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTS-FP 213
Query: 203 VKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPR 262
+K VA+ V EN ++A+A D +E S L + + + +D LL +
Sbjct: 214 IK-RERVADLLGFTNVI-ENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEY 271
Query: 263 CGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 308
G+ + SSIMP K NP E + + +G A TV
Sbjct: 272 DGI--TVARPYVQISSIMPQKRNPVSIEHARAITSSALGE--AFTV 313
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 42.8 bits (102), Expect = 3e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEF 160
L+P L+ L ++L + E+ D+ + RTH Q ATP TLG+E
Sbjct: 143 LLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEM 184
Score = 30.5 bits (70), Expect = 1.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 272 ENEPGSSIMPGKVNP 286
E GSS MP KVNP
Sbjct: 290 AGEIGSSTMPHKVNP 304
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 41.3 bits (97), Expect = 9e-04
Identities = 77/323 (23%), Positives = 120/323 (37%), Gaps = 45/323 (13%)
Query: 92 HVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDA 151
H RS+ ND T + + + +L+ L L + + + + V G TH Q A
Sbjct: 104 HTGRSR--NDQVATDLKLWCR-QQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRA 160
Query: 152 TPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIASAVA 210
P+T Y + R+ L R+ G G GT + A+A
Sbjct: 161 QPVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDR-------EALA 213
Query: 211 EETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIANDVRLLGSGPRCGLG 266
+L F A N ++++ D +E ++ + S++ ++A D+ SG G
Sbjct: 214 H--NLGFRRATRNSLDSVSDRDHVMEL---MSVASISMLHLSRLAEDLIFYNSGES---G 265
Query: 267 ELILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI--TVGGSNGHFELNVFKPM 323
+ L + GSS+MP K NP E + +V G + TV L K M
Sbjct: 266 FIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKA----LPLAYNKDM 321
Query: 324 I--ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAA 381
GL +L D C GI+ N ER T K GY NA
Sbjct: 322 QEDKEGLFDALDTWND-CMEMAALCFDGIKVNGER------------TLEAAKQGYANAT 368
Query: 382 AVAKKAHKEGTTLKDAALKLGVL 404
+A +G ++A +GV
Sbjct: 369 ELADYLVAKGIPFREAHHIVGVA 391
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 39.7 bits (93), Expect = 0.002
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 116 NSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVI 175
NS ++P + + ++ S + EF + + RTH Q A+P TLG+E + Y + R
Sbjct: 143 NSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMA----NFAYRLSRQR 198
Query: 176 CCLPRMYQLAQGGTAVGTGLNTKKGFDVKIAS-------AVAEE--TSL-----PFVTAE 221
L + + AVG ++ +++ AVAEE TSL P+VT
Sbjct: 199 KQLSEVKIKGKFAGAVGN-------YNAHMSAYPEVDWPAVAEEFVTSLGLTFNPYVT-- 249
Query: 222 NKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMP 281
+ HD E A++ L+ D+ S G + I E GSS MP
Sbjct: 250 ----QIEPHDYMAELFNAVSRFNNILIDFDRDIWSYIS---LGYFKQITKAGEVGSSTMP 302
Query: 282 GKVNPTQCE 290
KVNP E
Sbjct: 303 HKVNPIDFE 311
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 37.3 bits (87), Expect = 0.011
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 144 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDV 203
G T Q A P+T+ + + + DR+ ++ L GG A GT L G
Sbjct: 152 GHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGG-AAGT-LEKLGGKAA 209
Query: 204 KIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRC 263
+ + +A+ L E+ + + D + + L+ V SL K D+ L+
Sbjct: 210 AVRARLAKRLGL-----EDAPQWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQ---- 260
Query: 264 GLGELILPENEPGSSIMPGKVNPTQCEAL 292
G+ I GSS MP K NP E L
Sbjct: 261 -AGDEISLSGGGGSSAMPHKQNPVAAETL 288
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 37.4 bits (88), Expect = 0.011
Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 36/202 (17%)
Query: 98 SSNDTFPTVMHIAAAM-----ETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDAT 152
S ND +A + + + L L +L + E D + G TH Q A
Sbjct: 110 SRND------QVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQ 163
Query: 153 PLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTA-VGTGLNTKKGFDVKIASAVAE 211
P+T G Y + ++R+ R+ + G A GT + AE
Sbjct: 164 PVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRER-------TAE 216
Query: 212 ETSLPF--VTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELI 269
L F VT EN +A++ D +E A + + L ++A ++ L S G EL
Sbjct: 217 L--LGFDGVT-ENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSS-QEFGFVEL- 271
Query: 270 LPENEP-----GSSIMPGKVNP 286
P GSSIMP K NP
Sbjct: 272 -----PDAFSTGSSIMPQKKNP 288
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 35.9 bits (83), Expect = 0.033
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 16/202 (7%)
Query: 98 SSNDTFPTVMHIAAAMETNSRL---IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 154
+S+D T A A++ L I ++K L ++ +++E KD + +GR+H P+
Sbjct: 93 TSSDCIDT----AVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPI 148
Query: 155 TLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETS 214
T G + + ++K + + + + + + A+G + +++ V EE
Sbjct: 149 TFGLVLAIWYDEIKRHLKALEHTME-VISVGKISGAMGNFAHAP----LELEELVCEELG 203
Query: 215 LPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENE 274
L N+ + D + + AL +A+S KIA +R L E +
Sbjct: 204 LKPAPVSNQ---VIQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEYFSK-GQ 259
Query: 275 PGSSIMPGKVNPTQCEALTMVC 296
GSS MP K NP E +T +C
Sbjct: 260 KGSSAMPHKRNPVLSENITGLC 281
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 33.7 bits (77), Expect = 0.18
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 325 ASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYD 378
+ GLL+S+ G + + + NR+RI KLLHE L V LN D
Sbjct: 254 SGGLLNSISNKGKYLEIYTE----LNEENRKRILKLLHEDLNEVNELNKAPRLD 303
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 33.0 bits (76), Expect = 0.29
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 139 DIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNT 197
D V G TH Q A P+T Y + R+ L R+ G G GT
Sbjct: 148 DAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEI 207
Query: 198 KKGFDVKIASAVAEETSLPFVTA-ENKFEALAAHDAFVETSGALNTVAASLM---KIAND 253
+ ++A L F +A N ++++ D +E L+ + S++ + A D
Sbjct: 208 DR---EQLAG------WLGFASATRNSLDSVSDRDHVLEL---LSDASISMVHLSRFAED 255
Query: 254 VRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITV 308
+ SG G EL GSS+MP K NP E + C +V G + +
Sbjct: 256 LIFFNSG-EAGFVELS-DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLM 308
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 31.5 bits (72), Expect = 0.67
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 200 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 242
GFDV +A A+A+E L V+ ++ AL + V +G T
Sbjct: 24 GFDVDLAKAIAKELGLKVEFVEVSFDSLLTALKSGKIDVVAAGMTIT 70
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 31.8 bits (72), Expect = 0.79
Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 144 GRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG---GTAVGTGLNTKKG 200
G TH + A P+T + Y +K + I L + G G G +
Sbjct: 147 GYTHFRQAMPMT----VNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVK 202
Query: 201 FDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSG 260
F+ ++E + + + S ++++A L +I D+ +
Sbjct: 203 FNQ-----MSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN 257
Query: 261 PRCGLGELILP-ENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAI 306
G + +P E GSS+MP K NP E + A+ I I
Sbjct: 258 -----GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFI 299
>gnl|CDD|197308 cd09074, INPP5c, Catalytic domain of inositol polyphosphate
5-phosphatases. Inositol polyphosphate 5-phosphatases
(5-phosphatases) are signal-modifying enzymes, which
hydrolyze the 5-phosphate from the inositol ring of
specific 5-position phosphorylated phosphoinositides
(PIs) and inositol phosphates (IPs), such as PI(4,5)P2,
PI(3,4,5)P3, PI(3,5)P2, I(1,4,5)P3, and I(1,3,4,5)P4.
These enzymes are Mg2+-dependent, and belong to the
large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds. In addition to this INPP5c domain,
5-phosphatases often contain additional domains and
motifs, such as the SH2 domain, the Sac-1 domain, the
proline-rich domain (PRD), CAAX, RhoGAP
(RhoGTPase-activating protein), and SKICH [SKIP
(skeletal muscle- and kidney-enriched inositol
phosphatase) carboxyl homology] domains, that are
important for protein-protein interactions and/or for
the subcellular localization of these enzymes.
5-phosphatases incorporate into large signaling
complexes, and regulate diverse cellular processes
including postsynaptic vesicular trafficking, insulin
signaling, cell growth and survival, and endocytosis.
Loss or gain of function of 5-phosphatases is implicated
in certain human diseases. This family also contains a
functionally unrelated nitric oxide transport protein,
Cimex lectularius (bedbug) nitrophorin, which catalyzes
a heme-assisted S-nitrosation of a proximal thiolate;
the heme however binds at a site distinct from the
active site of the 5-phosphatases.
Length = 299
Score = 30.8 bits (70), Expect = 1.3
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 177 CLPRMYQLAQGGTAVGTGLNTK---KGFDVKIASAVAEETSLPFVTAENKFEALAAHDAF 233
LP++ L G VGTG K KG V I +TS FV + LAA
Sbjct: 96 HLPQIKDLEVEGVTVGTGGGGKLGNKGG-VAI-RFQINDTSFCFVNSH-----LAAGQEE 148
Query: 234 VETS 237
VE
Sbjct: 149 VERR 152
>gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine
biosynthesis, the formation of the imidazole ring. IGPS
converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 243
Score = 30.1 bits (69), Expect = 1.6
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 197 TKKGFDVKIASAVAEETSLPFV------TAENKFEALAAHDAFVETSGALNTVAASL 247
TKKG+D+++ AV+ ++P + E+ EA A AL AAS+
Sbjct: 176 TKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGA----DAAL---AASI 225
>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase;
Provisional.
Length = 347
Score = 30.2 bits (68), Expect = 2.3
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 106 VMHIAAAMETNSRLIPNLKVLHNSL---HSKSVEFKDIVKIGRTHTQDATPLTLGQEFSG 162
V + IP +K + L S + DI +I + + P+TLG EFSG
Sbjct: 5 VNDTDGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFK-NGAHYYPITLGHEFSG 63
Query: 163 YTTQVKYGIDR-----VICCLP 179
Y V G+D + C+P
Sbjct: 64 YVEAVGSGVDDLHPGDAVACVP 85
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as,
amino acids, peptides, sugars, vitamins and inorganic
ions. PBPs have two cell-membrane translocation
functions: bind substrate, and interact with the
membrane bound complex. A diverse group of periplasmic
transport receptors for lysine/arginine/ornithine (LAO),
glutamine, histidine, sulfate, phosphate, molybdate, and
methanol are included in the PBPb CD.
Length = 218
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 200 GFDVKIASAVAEETSLPF----VTAENKFEALAAHDAFVETSGALNT 242
GFDV +A A+A+E + V + AL + + +G T
Sbjct: 23 GFDVDLAKAIAKELGVKVKFVEVDWDGLITALKSGKVDLIAAGMTIT 69
>gnl|CDD|235034 PRK02395, PRK02395, hypothetical protein; Provisional.
Length = 279
Score = 29.7 bits (67), Expect = 2.7
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 23 YGLDPAIGKAIMQAAQEVA-EGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHK 81
G PA+ I A+ V + + + L V G GT+ N N+ + I A +
Sbjct: 109 VGTHPAMADVIAARARSVTGDPDVGEDTALAV--VGHGTERNENSAKAIYYHADRLRERG 166
Query: 82 R 82
R
Sbjct: 167 R 167
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 30.2 bits (68), Expect = 2.8
Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 29/219 (13%)
Query: 149 QDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQG-GTAVGTGLNTKKGFDVKIAS 207
Q A P +LG + + + G G GT F +A
Sbjct: 565 QPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPEF---VAR 621
Query: 208 AVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGE 267
+ E A N +A+A+ D + A+ ++ L ++A D++L +
Sbjct: 622 LLGFEQP-----APNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTRE---FAL 673
Query: 268 LILPEN-EPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF--ELNVFKPMI 324
+ LP+ GSS++P K NP E + V G + + F PM
Sbjct: 674 VSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMN 733
Query: 325 ASGLLHSLRLLGDASASFEKNC------VRGIQANRERI 357
+ A A+ E + G++A++ R+
Sbjct: 734 G--------PIAQACAAIEDAAAVLVLLIDGLEADQARM 764
>gnl|CDD|189052 cd09882, PIN_MtRv0301, PIN domain of the Rv0301 toxin of
Mycobacterium tuberculosis and other uncharacterized,
annotated PilT protein domain proteins. Virulence
associated protein C (VapC)-like PIN (PilT N terminus)
domain of Mycobacterium tuberculosis protein Rv0301 and
similar bacterial proteins are included in this
subfamily. They are PIN domain homologs of the
Mycobacterium tuberculosis VapC and Neisseria
gonorrhoeae FitB toxins of the prokaryotic
toxin/antitoxin operons, VapBC and FitAB, respectively,
which are believed to be involved in growth inhibition
by regulating translation. These toxins are nearly
always co-expressed with an antitoxin, a cognate protein
inhibitor, forming an inert protein complex.
Disassociation of the protein complex activates the
ribonuclease activity of the toxin by an, as yet
undefined mechanism. VapC-like PIN domains are homologs
of flap endonuclease-1 (FEN1)-like PIN domains, but lack
the extensive arch/clamp region and the H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region, seen in FEN1-like PIN
domains. PIN domains within this subgroup contain four
highly conserved acidic residues. These putative active
site residues are thought to bind Mg2+ and/or Mn2+ ions
and be essential for single-stranded ribonuclease
activity.
Length = 128
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 197 TKKGF------DVKIASAVAEETSLPFVTAENKFEALAAH 230
KKG D+ IA A A E L + + F+ +AA
Sbjct: 83 RKKGITIRSTVDLLIA-ATALEHGLTLLHNDRDFDTIAAV 121
>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase. Glucan
1,4-alpha-glucosidase catalyzes the hydrolysis of
terminal 1,4-linked alpha-D-glucose residues from
non-reducing ends of polysaccharides, releasing a
beta-D-glucose monomer. Some forms of this enzyme can
hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds
in polysaccharides as well [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 648
Score = 29.8 bits (67), Expect = 3.4
Identities = 14/70 (20%), Positives = 26/70 (37%)
Query: 13 KKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIAN 72
KK ++ + DP I++ E +G + D+ ++ N+ VI
Sbjct: 67 KKGRYRITKQIFTDPKRNALILKVTFEALKGSIGDYKLYLLLDPHLANTGGGNSGYVIKY 126
Query: 73 RAAEILGHKR 82
E+L K
Sbjct: 127 ANNEMLMAKG 136
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 29.6 bits (67), Expect = 4.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 183 QLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPF----VTAEN 222
L GGT +G GLNT K+A VAEE + +TA +
Sbjct: 461 HLNHGGTEMGQGLNT------KVAQVVAEEFQVDIDRVKITATD 498
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA
processing and modification].
Length = 1175
Score = 29.5 bits (66), Expect = 4.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 96 SQSSNDTFPTVMHIAAAMETN-SRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPL 154
S S+N+ V + + N SR + N++ + ++ H S F+ IV +
Sbjct: 259 SDSNNNVINPVSDNVPSRDMNDSRNVENVRPVRSNDHMNSFLFRPIVDSIS-------GM 311
Query: 155 TLGQEFS 161
TL FS
Sbjct: 312 TLPDSFS 318
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 29.3 bits (66), Expect = 5.1
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 337 DASASFEKNCVRGIQANRERISKL-------LHESLMLVTSLNPKIGYDNAAAVAKKAHK 389
+A A E+ I+A + RISKL ++L + KIGY + K
Sbjct: 352 EAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPWRYYSKLEI 411
Query: 390 EGTTLKDAALKLGVLN 405
+ +L L+ N
Sbjct: 412 KRDSLYGNVLRASAFN 427
>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog
Ypt1. Rab1/Ypt1 subfamily. Rab1 is found in every
eukaryote and is a key regulatory component for the
transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation of
the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 166
Score = 28.1 bits (63), Expect = 5.3
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 195 LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
L KK D A A+E +PF+ K A +AF+ + +
Sbjct: 119 LTDKKVVDYTEAKEFADELGIPFLETSAK-NATNVEEAFMTMAREI 163
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 28.4 bits (64), Expect = 5.6
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 86 IVHPNDHVNRSQSSNDTFPTVMHIAAAMET-NSRLIPNLKVLHNSLHSKSVEFKDIVK 142
IV P + V + T + A+E L+ L+ + + E K +K
Sbjct: 53 IVGPKESVGSHPAPESTLARLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIK 110
>gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein.
Length = 413
Score = 28.9 bits (65), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 244 AASLMKIANDVRLLGSGPRCGLGELILPENEPG 276
++SL KIA V G GE ++ E EPG
Sbjct: 21 SSSLKKIAEVVVPKRYGK----GEYVVREGEPG 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,774,579
Number of extensions: 1966014
Number of successful extensions: 1856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1770
Number of HSP's successfully gapped: 83
Length of query: 423
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 323
Effective length of database: 6,502,202
Effective search space: 2100211246
Effective search space used: 2100211246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)