RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014483
(423 letters)
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 423 bits (1088), Expect = e-147
Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 1/420 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP P+V AFG+LKK AA VN G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSG
Sbjct: 40 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSG 99
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++ + L
Sbjct: 100 TQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL 159
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
IP L L N+L +KS EF IVKIGRTH QDATPLTLGQEFSGY QV+ GI RV L
Sbjct: 160 IPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 219
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+ LAQGGTAVGTGLNTK GFDVKIA +++ET L F TA N+FEALAAHDA VE SGA
Sbjct: 220 TLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA 279
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
LNT+A SL KIA D+R LGSGPRCG EL+LPENEPGSSIMPGKVNPTQ EALT VC QV
Sbjct: 280 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQV 339
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
+GN+ AIT GS G FELNVFKP++ + LL+S+RL+ DA+ SF +CV GI+AN RI +
Sbjct: 340 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHE 399
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL +EFD VVPE M+
Sbjct: 400 LLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 399 bits (1025), Expect = e-137
Identities = 257/420 (61%), Positives = 311/420 (74%), Gaps = 2/420 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP ++ A + K+ AAKVN + G L AI QAA EV G+ +D FPL +WQTGSG
Sbjct: 37 MPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSG 96
Query: 60 TQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
TQSNMN NEV+ANRA+E+LG RG + VHPND VN+SQSSND FPT MH+AA + +
Sbjct: 97 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQ 156
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LIP LK L +L+ KS F DIVKIGRTH QDATPLTLGQE SG+ +++ + + L
Sbjct: 157 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 216
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
P + +LA GGTAVGTGLNT + ++A +A T PFVTA NKFEALA DA V+ G
Sbjct: 217 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 276
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL +AASLMKIANDVR L SGPRCG+GE+ +PENEPGSSIMPGKVNPTQCEALTM+C Q
Sbjct: 277 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 336
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V+GN VAI +GG++G+FELNVF+PM+ L S+RLL D SF K+C GI+ NRERI+
Sbjct: 337 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 396
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+LL+ESLMLVT+LN IGYD AA +AKKAHKEG TLK AAL LG L+ EFD+ V PE+M
Sbjct: 397 QLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 392 bits (1007), Expect = e-134
Identities = 238/422 (56%), Positives = 295/422 (69%), Gaps = 1/422 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
MP I+RA+G+LKK AA+ N+E G L I KAI+QAA+EV +GK +DHFPLVV+QTGSG
Sbjct: 38 MPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSG 97
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
TQ+NMN NEVIANRA+EILG G K HPNDHVNR QSSNDTFPT M++A A+ + RL
Sbjct: 98 TQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRL 157
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
P ++ L + +K+ F IVK+GRTH DA P+TLGQE + Q+K + V
Sbjct: 158 YPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEK 217
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
+Y LA GGTAVGTGLN F +A +AEET LPF AEN+F ALAAHD V GA
Sbjct: 218 GLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGA 277
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
+ T+A +LMKI NDVR L SGP G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV +V
Sbjct: 278 IRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRV 337
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
GN + GS G+F+LNV+KP++A L S+ LL DA ASF+ + +GI+ N ERI +
Sbjct: 338 YGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEE 397
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
L ++ ML T+LN IGYD AA + KKA KE TLK AAL+LG L EEFD +VVP ++
Sbjct: 398 YLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLA 457
Query: 420 GP 421
P
Sbjct: 458 KP 459
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 330 bits (846), Expect = e-110
Identities = 176/424 (41%), Positives = 264/424 (62%), Gaps = 3/424 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
+ ++++ GI+KK AA NME G LD +G+ I++AA EV EGK ND F + Q G+G
Sbjct: 37 IHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAG 96
Query: 60 TQSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
T NMNANEVIANRA E++G ++G + PN HVN SQS+ND FPT HIA + ++
Sbjct: 97 TSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAV-LSLLNQ 155
Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
LI K + K+ EF ++K+GRTH QDA P+ LGQEF Y + I+R+
Sbjct: 156 LIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTR 215
Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
+Y + G TAVGTGLN + + +A+ + P +A++ +A D + E S
Sbjct: 216 NNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSS 275
Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
AL ++ KIAND+RL+ SGPR GL E++LP +PGSSIMPGKVNP E + V Q
Sbjct: 276 ALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQ 335
Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
V GN + IT G FELNV +P++ L+ S+ ++ + SF +NC++GI+AN ER+
Sbjct: 336 VFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMK 395
Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
+ + +S+ ++T++NP +GY+ AA +A++A+ G ++++ +K GVL E+ + ++ P +M
Sbjct: 396 EYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEM 455
Query: 419 IGPS 422
I P
Sbjct: 456 IHPG 459
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 314 bits (806), Expect = e-104
Identities = 165/415 (39%), Positives = 241/415 (58%), Gaps = 4/415 (0%)
Query: 1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEV-AEGKLNDHFPLVVWQTGS 58
VR ++KK AA N E + ++ AI+ A EV GK D FP+ V+Q G+
Sbjct: 43 DIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA 102
Query: 59 GTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNS 117
GT NMN NEV+AN E++GH++GE + ++PNDHVN+ QS+ND +PT IA
Sbjct: 103 GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLI- 161
Query: 118 RLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICC 177
+L+ + L K+VEF+DI+K+GRT QDA P+TLGQEF ++ +K + +
Sbjct: 162 KLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRT 221
Query: 178 LPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETS 237
+ ++ G TA+GTGLNT K + +AE T P V AE+ EA + A+V
Sbjct: 222 AELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVH 281
Query: 238 GALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCA 297
GAL +A + KI ND+RLL SGPR GL E+ LPE + GSSIMP KVNP E + VC
Sbjct: 282 GALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCF 341
Query: 298 QVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERI 357
+VIGN +T+ G +LNV +P+I + S+ +L +A + + C+ GI AN+E
Sbjct: 342 KVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVC 401
Query: 358 SKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNL 412
++ S+ +VT LNP IG+ N V K + G ++++ L+ G+L E D++
Sbjct: 402 EGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDI 456
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 185 bits (470), Expect = 5e-55
Identities = 74/427 (17%), Positives = 144/427 (33%), Gaps = 47/427 (11%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
E +A+ ++ A + E G P + I + A E + + T
Sbjct: 8 EENRFKAWLEVEILACEAWAELGDIPKEDVQKIRENASFDIER---------INEIEQET 58
Query: 61 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
+ ++ A E + V+ +S D T + + L
Sbjct: 59 RHDVVAFT-----------RAVSETLGEERKWVHYGLTSTDVVDTALSYLIKQANSILL- 106
Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
+L+ L +K+ E K V +GRTH A P T G + + + ++K ++R
Sbjct: 107 QDLENFVEILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAAS- 165
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
+ + AVGT N + + + D A+
Sbjct: 166 GVEFGKMSGAVGTYANINPFVESYVCE-------KLGLQPAPISTQTLQRDRHAHYMAAI 218
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
+ +A S+ K A ++R L + E + + GSS MP K NP E +T + +
Sbjct: 219 SLIATSIEKFAVEIRGLQKSETREVEEF-FAKGQKGSSAMPHKRNPIGSENMTGLARVIR 277
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
G+ + E ++ +L + + + N V+ + E + +
Sbjct: 278 GHMLTAY-ENVPLWHERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRN 336
Query: 361 LHESLMLVTS-----------LNPKIGYDNAAAVAKKAHKEGTTLKDAALK----LGVLN 405
+ +L L+ S + + YD A +A ++ K L+
Sbjct: 337 MDRTLGLIYSQRVLLALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLS 396
Query: 406 SEEFDNL 412
+EE ++
Sbjct: 397 AEEIEDC 403
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 171 bits (434), Expect = 2e-49
Identities = 86/436 (19%), Positives = 145/436 (33%), Gaps = 35/436 (8%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 61
++ + A+ GL P A + + + T
Sbjct: 19 DRGRLQGMLDFEAALARAEASAGLVPH------SAVAAIEAACQAERYDTGALANAIATA 72
Query: 62 SNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 121
N V A + +V+ +S D T + + + +
Sbjct: 73 GNSAIPLVKALGKVI------ATGVPEAERYVHLGATSQDAMDTGLVLQLRDALD-LIEA 125
Query: 122 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM 181
+L L ++L ++++ D +GRT Q ATP+TLG + +G + R+ PR+
Sbjct: 126 DLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRL 185
Query: 182 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 241
L GG + K +A A+AE+ L D VE + L
Sbjct: 186 LVLQFGGASGSLAALGSKAMP--VAEALAEQLKLTLPEQPWHT----QRDRLVEFASVLG 239
Query: 242 TVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
VA SL K D+ LL + E + GSS MP K NP L +V G
Sbjct: 240 LVAGSLGKFGRDISLLMQTEAGEVFEPS-APGKGGSSTMPHKRNPVGAAVLIGAATRVPG 298
Query: 302 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 361
+ H L L+ + + G++ + R+ + L
Sbjct: 299 LLSTLFAAMPQEHERSLGLWHAEWETLPDICCLV-SGALRQAQVIAEGMEVDAARMRRNL 357
Query: 362 HESLMLVTS------LNPKIGYDNAAAV----AKKAHKEGTTLKDAALK----LGVLNSE 407
+ LV + L ++G D A + ++A E L+ L+ E
Sbjct: 358 DLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGE 417
Query: 408 EFDNLVVPEKMIGPSD 423
E D L+ P +G +
Sbjct: 418 ELDRLLDPAHYLGQAR 433
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 153 bits (388), Expect = 6e-43
Identities = 75/437 (17%), Positives = 138/437 (31%), Gaps = 45/437 (10%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQ 61
E R + ++ + E G+ P + + N + +++
Sbjct: 15 EEAKYRRWLEVELAVTRAYEELGMIPK------GVTERIRN---NAKIDVELFKKIEEK- 64
Query: 62 SNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIP 121
++V+A G I + + +S+D T +A L
Sbjct: 65 ---TNHDVVAFV------EGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLES 115
Query: 122 NLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRM 181
+ + L + +K IGRTH A P + G + G+ +++K + R+ + +
Sbjct: 116 LKEF-CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEV 174
Query: 182 YQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALN 241
G + + S + E + D L
Sbjct: 175 SYGKISGAVGNYANVPPEVE--------EKALSYLGLKPEPVSTQVVPRDRHAFYLSTLA 226
Query: 242 TVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIG 301
VAA + +IA ++R L + E + + GSS MP K NP CE LT + +
Sbjct: 227 IVAAGIERIAVEIRHLQRTEVLEVEE-PFRKGQRGSSAMPHKKNPITCERLTGLSRMMRA 285
Query: 302 NHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLL 361
++ E ++ + + N VR ++ N ER+ K +
Sbjct: 286 YVDP-SLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNI 344
Query: 362 HESLMLVTS-----------LNPKIGYDNAAAVAKKAHKEGTTLKDAALK----LGVLNS 406
+ LV S L K YD A K + L+ ++
Sbjct: 345 DLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTK 404
Query: 407 EEFDNLVVPEKMIGPSD 423
EE + L + D
Sbjct: 405 EELEELFDISYYLKHVD 421
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 153 bits (386), Expect = 1e-42
Identities = 80/433 (18%), Positives = 149/433 (34%), Gaps = 35/433 (8%)
Query: 6 VRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNM 64
V + A+ + G+ P I +AA+ D T +G N+
Sbjct: 22 VSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAI-----DKIDFDALATATGLAGNI 76
Query: 65 NANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLK 124
V A + +V+ +S D T + + + + ++
Sbjct: 77 AIPFVKQLTAIVKDADE------DAARYVHWGATSQDILDTACIL-QCRDALAIVQNQVQ 129
Query: 125 VLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQL 184
+ + S++ ++ V +GRT Q A P+TLG + + + + K +DR+ R+
Sbjct: 130 QCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVA 189
Query: 185 AQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVA 244
GG +G V E + + D VE + L +
Sbjct: 190 QLGGAVGSLASLQDQGS------IVVEAYAKQLKLGQTACTWHGERDRIVEIASVLGIIT 243
Query: 245 ASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHV 304
++ K+A D L+ + E + GSS MP K NP ++ +V
Sbjct: 244 GNVGKMARDWSLMMQTEIAEVFEPT-AKGRGGSSTMPHKRNPVAAASVLAAANRVPALMS 302
Query: 305 AITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHES 364
+I E ++ L + L + + ++G++ N E + + + +
Sbjct: 303 SIYQ-SMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECT 361
Query: 365 LMLVTS------LNPKIGYDNAAAV----AKKAHKEGTTLKDAALKL----GVLNSEEFD 410
L+ + L P +G NA V K A E LKD ++ N + D
Sbjct: 362 HGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDIISQVDEVKQYFNPSQLD 421
Query: 411 NLVVPEKMIGPSD 423
+ PE +G
Sbjct: 422 EIFKPESYLGNIQ 434
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 138 bits (347), Expect = 5e-37
Identities = 69/416 (16%), Positives = 130/416 (31%), Gaps = 40/416 (9%)
Query: 17 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 75
++ + G L A I+ +VAE F L T ANE
Sbjct: 41 SRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHT-----ANERRLK--- 92
Query: 76 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 135
E I ++ +S ND T + + +T S L L L ++ ++
Sbjct: 93 --------ELIGATAGKLHTGRSRNDQVVTDLRLWM-RQTCSTLSGLLWELIRTMVDRAE 143
Query: 136 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 195
+D++ G TH Q A P+ + + +R++ R+ L G A+
Sbjct: 144 AERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNP 203
Query: 196 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR 255
++ T N +A + D E + L ++A D+
Sbjct: 204 LGVDRELLRAELNFGAIT-------LNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLI 256
Query: 256 LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 315
L + + GSS+MP K NP E + +V G + +
Sbjct: 257 LYCTKEFS--FVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPS 314
Query: 316 ELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLM-------LV 368
N + + + +Q ++E + + L ++ LV
Sbjct: 315 TYNKDLQEDKEAVFEVSDTMSAVL-QVATGVISTLQIHQENMGQALSPDMLATDLAYYLV 373
Query: 369 TSLNP-KIGYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 419
P + ++ + A +G L +L + L S + + +
Sbjct: 374 RKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSV 429
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 137 bits (345), Expect = 1e-36
Identities = 69/418 (16%), Positives = 131/418 (31%), Gaps = 42/418 (10%)
Query: 17 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 75
+K + G L + +A + E + +A ++ +
Sbjct: 39 SKALVTVGVLTAEEQAQLEEALNVLLED----------VRARPQQILESDAEDIHSWVEG 88
Query: 76 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 135
+++ + ++ +S ND T + + + + + L ++L +
Sbjct: 89 KLIDK-----VGQLGKKLHTGRSRNDQVATDLKLWCKDTVSEL-LTANRQLQSALVETAQ 142
Query: 136 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLA-QGGTAVGTG 194
+D V G TH Q A P+T Y + R+ L R+ G GT
Sbjct: 143 NNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTA 202
Query: 195 LNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDV 254
+ +A T N ++++ D +E A L + A D+
Sbjct: 203 YEIDREQ-------LAGWLGFASATR-NSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDL 254
Query: 255 RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGH 314
+G + GSS+MP K NP E + C +V G + +
Sbjct: 255 IFFNTGEAGFVELS--DRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLP 312
Query: 315 FELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPK 374
N GL +L D + GIQ R R + + T L
Sbjct: 313 LAYNKDMQEDKEGLFDALDTWLDCLHMA-ALVLDGIQVKRPRCQEAAQQGYANATELADY 371
Query: 375 I---------GYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 419
+ + +A ++G L+D L K + E+ ++ + +
Sbjct: 372 LVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCL 429
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 128 bits (323), Expect = 1e-33
Identities = 68/415 (16%), Positives = 133/415 (32%), Gaps = 38/415 (9%)
Query: 17 AKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAA 75
AK + G L + I+ ++++E F + ++E I A
Sbjct: 30 AKALEKAGILTKTELEKILSGLEKISEEWSKGVFVV------------KQSDEDIHT-AN 76
Query: 76 EILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSV 135
E + E I ++ +S ND T + + + S + +L L +L ++
Sbjct: 77 E---RRLKELIGDIAGKLHTGRSRNDQVVTDLKLFM-KNSLSIISTHLLQLIKTLVERAA 132
Query: 136 EFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGL 195
D++ G H Q A P+ Q + + +R+ R+ L G G
Sbjct: 133 IEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLG---SGALA 189
Query: 196 NTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVR 255
D + + + N +A++ D VE + L K+A D+
Sbjct: 190 GNPLDIDRE----MLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 245
Query: 256 LLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHF 315
+ + + GSS+MP K NP E + +V G +I +
Sbjct: 246 IYSTSEFGF--LTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPS 303
Query: 316 ELNVFKPMIASGLLHSLR----LLGDASASFEKNCVRGIQANRERISKLLHESLM--LVT 369
N + + +L A+ + + ++L L LV
Sbjct: 304 TYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVR 363
Query: 370 SLNP-KIGYDNAAAVAKKAHKEGTTLKDAAL----KLGVLNSEEFDNLVVPEKMI 419
P + + + A +G T+ +L + S + + +
Sbjct: 364 KGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSV 418
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 126 bits (317), Expect = 4e-33
Identities = 68/411 (16%), Positives = 140/411 (34%), Gaps = 48/411 (11%)
Query: 2 PEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
E I+ A+ +++ E G+ + + +A+ E V++ T
Sbjct: 20 NEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADE----------VYRLERET 69
Query: 61 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
++ + ++ + +V+ +SND T + +
Sbjct: 70 GHDILSLVLLLEQ-------------KSGCRYVHYGATSNDIIDTAWALLIRRALAAVKE 116
Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
+ + L S + ++K + +GRTH Q A P+TLG +F+ Y ++ + L
Sbjct: 117 KARA-VGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQ--LALAE 173
Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
+ A+ G AVGT + + + +A ++F + AL
Sbjct: 174 EFIRAKIGGAVGTMASWGELGLEVRR----RVAERLGLPHHVITTQVAPRESFAVLASAL 229
Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
+AA ++A ++R L + E GSS MP K NPT E + + V
Sbjct: 230 ALMAAVFERLAVEIRELSRPEIG-----EVVEGGGGSSAMPHKANPTASERIVSLARYVR 284
Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
E ++ + L D + ++ + + ERI++
Sbjct: 285 ALTHVAF-ENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITEN 343
Query: 361 LHESLMLVTS-----------LNPKIGYDNAAAVAKKAHKEGTTLKDAALK 400
L ++L + + + Y A V + + ++
Sbjct: 344 LQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIE 394
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 29.1 bits (63), Expect = 0.91
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 15/101 (14%)
Query: 23 YGLDPAIGKAIMQAAQ------------EVAEGKLNDHF---PLVVWQTGSGTQSNMNAN 67
G+ P I + + A + + V GTQ+N+ A
Sbjct: 10 VGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69
Query: 68 EVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMH 108
+ ++ + G H + + T P
Sbjct: 70 SLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD
{Pseudomonas putida [TaxId: 303]}
Length = 345
Score = 29.0 bits (63), Expect = 1.2
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 14/84 (16%)
Query: 23 YGLDPAIGKAIMQAA------------QEVAEGKLNDHF--PLVVWQTGSGTQSNMNANE 68
G P + +A+++ + + K + F + V+ +GT +N
Sbjct: 13 AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS 72
Query: 69 VIANRAAEILGHKRGEKIVHPNDH 92
+ I H
Sbjct: 73 AMTPPWGNIYCHPASHINNDECGA 96
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 28.1 bits (61), Expect = 2.5
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 23 YGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKR 82
+ P G A+ + +G + VV T G + + + +N ++
Sbjct: 390 MFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFS 449
Query: 83 GEKIVHPND 91
+ D
Sbjct: 450 NPPVDVKAD 458
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase,
N-terminal domain {North american leech (Macrobdella
decora) [TaxId: 6405]}
Length = 196
Score = 26.4 bits (57), Expect = 4.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 302 NHVAITVGGSNGHFELNVFKPMIASG 327
N VA+ +N L ++A+
Sbjct: 111 NTVALKADAANKQCRLFANGELLATL 136
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,453,915
Number of extensions: 63640
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 18
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)