Query 014485
Match_columns 423
No_of_seqs 212 out of 1206
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 5.8E-16 2E-20 126.0 6.5 61 328-388 4-65 (82)
2 4h10_B Circadian locomoter out 99.6 2.7E-15 9.4E-20 119.9 7.2 60 327-386 5-65 (71)
3 4ati_A MITF, microphthalmia-as 99.5 4.5E-15 1.5E-19 128.4 6.9 65 324-388 21-89 (118)
4 4h10_A ARYL hydrocarbon recept 99.5 2.2E-15 7.4E-20 120.9 3.6 56 325-380 4-63 (73)
5 1an4_A Protein (upstream stimu 99.5 1.2E-15 4.1E-20 118.5 1.8 54 330-383 5-64 (65)
6 1a0a_A BHLH, protein (phosphat 99.5 1.9E-15 6.4E-20 117.9 1.6 53 331-383 3-62 (63)
7 1hlo_A Protein (transcription 99.5 5.3E-14 1.8E-18 113.6 6.3 59 330-388 12-72 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 5.7E-14 2E-18 113.8 6.3 58 330-387 2-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.6E-13 5.4E-18 113.2 6.4 58 330-387 6-66 (88)
10 3u5v_A Protein MAX, transcript 99.4 4.2E-13 1.4E-17 108.3 5.7 58 330-387 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 4E-12 1.4E-16 103.3 6.8 57 331-387 2-61 (80)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 2.4E-12 8.3E-17 128.3 5.1 94 327-421 10-109 (387)
13 4f3l_A Mclock, circadian locom 99.2 1.6E-11 5.4E-16 120.9 6.3 94 327-421 9-108 (361)
14 1mdy_A Protein (MYOD BHLH doma 99.1 8.5E-11 2.9E-15 93.0 5.1 53 330-382 12-66 (68)
15 2ql2_B Neurod1, neurogenic dif 99.0 1.9E-10 6.4E-15 88.9 5.7 53 331-383 3-58 (60)
16 4ath_A MITF, microphthalmia-as 98.6 3.9E-08 1.3E-12 80.7 5.8 46 342-387 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.5 1.9E-08 6.6E-13 79.8 1.9 46 335-380 19-67 (68)
18 4aya_A DNA-binding protein inh 98.0 9.8E-06 3.3E-10 68.3 7.3 49 338-386 33-84 (97)
19 3muj_A Transcription factor CO 45.5 25 0.00084 31.2 4.8 35 344-378 95-133 (138)
20 1xkm_B Distinctin chain B; por 28.2 59 0.002 20.8 3.1 20 365-384 3-22 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.61 E-value=5.8e-16 Score=126.01 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=56.7
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHhccCCC-CCCchhhhHHHHHHHHHHHHHHHHHhccC
Q 014485 328 SRAAEVHNLSERRRRDRINEKMRALQELIPRC-NKSDKASMLDEAIEYLKSLQLQVQMMSMG 388 (423)
Q Consensus 328 ~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~K~DKASIL~eAIeYIK~LQ~qvq~Ls~~ 388 (423)
..++..|+.+||+||++||++|.+|++|||.+ .|+||++||.+||+||++||.+++.|..+
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e 65 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE 65 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 79999999999999999999999999864
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=119.87 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=54.4
Q ss_pred chhhhhccchHHHHHHHHHHHHHHHHHhccCCC-CCCchhhhHHHHHHHHHHHHHHHHHhc
Q 014485 327 RSRAAEVHNLSERRRRDRINEKMRALQELIPRC-NKSDKASMLDEAIEYLKSLQLQVQMMS 386 (423)
Q Consensus 327 r~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-~K~DKASIL~eAIeYIK~LQ~qvq~Ls 386 (423)
...++.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||++||.++.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344567899999999999999999999999975 599999999999999999999987765
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=4.5e-15 Score=128.44 Aligned_cols=65 Identities=35% Similarity=0.567 Sum_probs=51.5
Q ss_pred cccchhhhhccchHHHHHHHHHHHHHHHHHhccCCCC----CCchhhhHHHHHHHHHHHHHHHHHhccC
Q 014485 324 SAKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCN----KSDKASMLDEAIEYLKSLQLQVQMMSMG 388 (423)
Q Consensus 324 ~~kr~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~----K~DKASIL~eAIeYIK~LQ~qvq~Ls~~ 388 (423)
..++..++..|+.+||+||++||++|.+|++|||.|. |++|++||.+||+||++||.+++.|...
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778999999999999999999999999985 6789999999999999999999999853
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.2e-15 Score=120.86 Aligned_cols=56 Identities=36% Similarity=0.595 Sum_probs=50.9
Q ss_pred ccchhhhhccchHHHHHHHHHHHHHHHHHhccCCC----CCCchhhhHHHHHHHHHHHHH
Q 014485 325 AKRSRAAEVHNLSERRRRDRINEKMRALQELIPRC----NKSDKASMLDEAIEYLKSLQL 380 (423)
Q Consensus 325 ~kr~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~----~K~DKASIL~eAIeYIK~LQ~ 380 (423)
.+...++..|+.+||+||++||+.|.+|+.|||.| .|+|||+||++||+|||.|+.
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34566778999999999999999999999999987 699999999999999999974
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.2e-15 Score=118.52 Aligned_cols=54 Identities=33% Similarity=0.554 Sum_probs=49.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCCC------CCchhhhHHHHHHHHHHHHHHHH
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRCN------KSDKASMLDEAIEYLKSLQLQVQ 383 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~~------K~DKASIL~eAIeYIK~LQ~qvq 383 (423)
++..|+.+||+||++||++|.+|++|||.+. |++|++||.+||+||++||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999986 78999999999999999998653
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.9e-15 Score=117.88 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=48.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhccCCC-------CCCchhhhHHHHHHHHHHHHHHHH
Q 014485 331 AEVHNLSERRRRDRINEKMRALQELIPRC-------NKSDKASMLDEAIEYLKSLQLQVQ 383 (423)
Q Consensus 331 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~-------~K~DKASIL~eAIeYIK~LQ~qvq 383 (423)
+.+|+++||+||++||+.|.+|+.|||.+ .|++||+||++||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999976 466799999999999999998753
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=5.3e-14 Score=113.55 Aligned_cols=59 Identities=29% Similarity=0.533 Sum_probs=55.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHHHHhccC
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQVQMMSMG 388 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~DKASIL~eAIeYIK~LQ~qvq~Ls~~ 388 (423)
.+..|+..||+||++||++|..|+++||.+ .|++|++||..||+||++|+.+++.|...
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999987 59999999999999999999999998754
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=5.7e-14 Score=113.81 Aligned_cols=58 Identities=29% Similarity=0.541 Sum_probs=53.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQVQMMSM 387 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~DKASIL~eAIeYIK~LQ~qvq~Ls~ 387 (423)
++..|+..||+||++||+.|..|+++||.+ .|++|++||.+||+||++|+.+++.|..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999986 6999999999999999999999888864
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.6e-13 Score=113.24 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=53.2
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMSM 387 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~DKASIL~eAIeYIK~LQ~qvq~Ls~ 387 (423)
.+..|+..||+||++||++|..|+++||.+ .|++|++||.+||+||++|+.+++.|..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999986 4999999999999999999999887654
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.37 E-value=4.2e-13 Score=108.32 Aligned_cols=58 Identities=31% Similarity=0.443 Sum_probs=49.8
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCC---CCC-chhhhHHHHHHHHHHHHHHHHHhcc
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRC---NKS-DKASMLDEAIEYLKSLQLQVQMMSM 387 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~-DKASIL~eAIeYIK~LQ~qvq~Ls~ 387 (423)
++..|+..||+||+.||++|.+|+.+||.+ .|. .|+.||..||+||++|++++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456799999999999999999999999953 455 7999999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.29 E-value=4e-12 Score=103.29 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=52.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhcc
Q 014485 331 AEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMSM 387 (423)
Q Consensus 331 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~DKASIL~eAIeYIK~LQ~qvq~Ls~ 387 (423)
+..||..||+||+.||++|..|+++||.+ .|.+|+.||.+|++||+.|+.+.+.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~ 61 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999965 5889999999999999999999987764
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.26 E-value=2.4e-12 Score=128.31 Aligned_cols=94 Identities=26% Similarity=0.377 Sum_probs=72.3
Q ss_pred chhhhhccchHHHHHHHHHHHHHHHHHhccC----CCCCCchhhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCc--hhh
Q 014485 327 RSRAAEVHNLSERRRRDRINEKMRALQELIP----RCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGVVPMMFP--GVQ 400 (423)
Q Consensus 327 r~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP----~~~K~DKASIL~eAIeYIK~LQ~qvq~Ls~~~~~~P~~~p--g~q 400 (423)
...++++|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+......... ...|.++. .+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEA-NYKPTFLSDDELK 88 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC------C-CSSCTTSCHHHHH
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccccccccc-ccCcccCCHHHHH
Confidence 3455778999999999999999999999999 4579999999999999999998544333222 23344443 577
Q ss_pred hcccccCCCCcccccCCcccc
Q 014485 401 QYMPNMGMGIGMGMGMGRAWI 421 (423)
Q Consensus 401 ~~m~~~g~gm~~~~g~~~~~i 421 (423)
+++.....||.+.+.++-|+|
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i 109 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKI 109 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBE
T ss_pred HHHHhcCCCEEEEEecCCeEE
Confidence 888888899999988876665
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.18 E-value=1.6e-11 Score=120.85 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=62.1
Q ss_pred chhhhhccchHHHHHHHHHHHHHHHHHhccC-CCCCCchhhhHHHHHHHHHHHHHHHHHhc---cCCCCCCCCCc--hhh
Q 014485 327 RSRAAEVHNLSERRRRDRINEKMRALQELIP-RCNKSDKASMLDEAIEYLKSLQLQVQMMS---MGCGVVPMMFP--GVQ 400 (423)
Q Consensus 327 r~~~~~~H~~~ERrRRdrINe~~~~Lr~LVP-~~~K~DKASIL~eAIeYIK~LQ~qvq~Ls---~~~~~~P~~~p--g~q 400 (423)
...++..|+.+||+||++||+.|.+|+.||| ...|+||++||.+||+|||.|+....... ......|.++. .+.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFT 88 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHH
Confidence 3445677999999999999999999999999 56799999999999999999986543211 11123344443 456
Q ss_pred hcccccCCCCcccccCCcccc
Q 014485 401 QYMPNMGMGIGMGMGMGRAWI 421 (423)
Q Consensus 401 ~~m~~~g~gm~~~~g~~~~~i 421 (423)
+++.....||.+.+..+ |+|
T Consensus 89 ~~~l~a~~~~i~v~~~~-G~i 108 (361)
T 4f3l_A 89 QLMLEALDGFFLAIMTD-GSI 108 (361)
T ss_dssp HHHHHHTTEEEEEEETT-SBE
T ss_pred HHHHHhcCceEEEEcCC-ccE
Confidence 77777777776666554 443
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.08 E-value=8.5e-11 Score=93.03 Aligned_cols=53 Identities=26% Similarity=0.449 Sum_probs=48.6
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhccCCC--CCCchhhhHHHHHHHHHHHHHHH
Q 014485 330 AAEVHNLSERRRRDRINEKMRALQELIPRC--NKSDKASMLDEAIEYLKSLQLQV 382 (423)
Q Consensus 330 ~~~~H~~~ERrRRdrINe~~~~Lr~LVP~~--~K~DKASIL~eAIeYIK~LQ~qv 382 (423)
.+..|+..||+|+..||+.|..|+++||.. .|++|+.||..||+||++|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999975 59999999999999999999754
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.05 E-value=1.9e-10 Score=88.94 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=48.1
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 014485 331 AEVHNLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQ 383 (423)
Q Consensus 331 ~~~H~~~ERrRRdrINe~~~~Lr~LVP~~---~K~DKASIL~eAIeYIK~LQ~qvq 383 (423)
+..||..||+|+..||+.|..|+++||.. .|++|+.||..||+||++|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999975 499999999999999999998653
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.62 E-value=3.9e-08 Score=80.74 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhccCCCC----CCchhhhHHHHHHHHHHHHHHHHHhcc
Q 014485 342 RDRINEKMRALQELIPRCN----KSDKASMLDEAIEYLKSLQLQVQMMSM 387 (423)
Q Consensus 342 RdrINe~~~~Lr~LVP~~~----K~DKASIL~eAIeYIK~LQ~qvq~Ls~ 387 (423)
|..||++|.+|..|||.++ |.+|++||..||+||++||.+++.|..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999874 789999999999999999887776653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.54 E-value=1.9e-08 Score=79.78 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHH
Q 014485 335 NLSERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQL 380 (423)
Q Consensus 335 ~~~ERrRRdrINe~~~~Lr~LVP~~---~K~DKASIL~eAIeYIK~LQ~ 380 (423)
+..||+|...||+.|..||++||.. .|++|..||..||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999976 599999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.04 E-value=9.8e-06 Score=68.29 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCC---CCCchhhhHHHHHHHHHHHHHHHHHhc
Q 014485 338 ERRRRDRINEKMRALQELIPRC---NKSDKASMLDEAIEYLKSLQLQVQMMS 386 (423)
Q Consensus 338 ERrRRdrINe~~~~Lr~LVP~~---~K~DKASIL~eAIeYIK~LQ~qvq~Ls 386 (423)
|+.|=..||+.|..||.+||.. .|+.|..+|..||+||++|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788999999999999965 499999999999999999999877644
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=45.47 E-value=25 Score=31.23 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccCCC----CCCchhhhHHHHHHHHHHH
Q 014485 344 RINEKMRALQELIPRC----NKSDKASMLDEAIEYLKSL 378 (423)
Q Consensus 344 rINe~~~~Lr~LVP~~----~K~DKASIL~eAIeYIK~L 378 (423)
.|.=+|..|+++||.. .++-|-.||.+|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4778999999999976 3788999999999999877
No 20
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=28.16 E-value=59 Score=20.83 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 014485 365 ASMLDEAIEYLKSLQLQVQM 384 (423)
Q Consensus 365 ASIL~eAIeYIK~LQ~qvq~ 384 (423)
.+-|-+|-+|+.+|+.+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999988765
Done!