Query 014486
Match_columns 423
No_of_seqs 205 out of 2451
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 05:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.5E-69 3.1E-74 463.4 29.1 366 45-415 60-426 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 1.7E-66 3.7E-71 473.6 34.0 359 46-408 91-460 (519)
3 COG0513 SrmB Superfamily II DN 100.0 2.3E-63 5E-68 473.3 40.2 366 46-413 29-398 (513)
4 PRK11776 ATP-dependent RNA hel 100.0 8.1E-62 1.8E-66 463.4 40.2 362 46-412 4-365 (460)
5 KOG0328 Predicted ATP-dependen 100.0 2.6E-62 5.6E-67 401.7 27.8 366 45-415 26-392 (400)
6 PRK04837 ATP-dependent RNA hel 100.0 4.2E-61 9.1E-66 453.7 39.6 363 45-412 7-378 (423)
7 PTZ00110 helicase; Provisional 100.0 5.9E-61 1.3E-65 461.3 40.1 367 41-411 125-499 (545)
8 KOG0338 ATP-dependent RNA heli 100.0 9.4E-63 2E-67 434.9 25.2 357 46-407 181-544 (691)
9 PRK11634 ATP-dependent RNA hel 100.0 6.9E-61 1.5E-65 464.4 40.1 363 47-413 7-369 (629)
10 KOG0342 ATP-dependent RNA heli 100.0 1.4E-61 3E-66 426.7 30.4 358 45-405 81-446 (543)
11 PRK10590 ATP-dependent RNA hel 100.0 2E-60 4.3E-65 451.6 39.4 361 47-412 2-368 (456)
12 KOG0345 ATP-dependent RNA heli 100.0 2.5E-60 5.4E-65 416.0 32.4 357 47-405 5-373 (567)
13 PRK04537 ATP-dependent RNA hel 100.0 2.4E-59 5.3E-64 451.4 40.1 363 46-413 9-381 (572)
14 KOG0326 ATP-dependent RNA heli 100.0 3.3E-61 7.1E-66 401.8 23.0 365 43-413 82-446 (459)
15 PRK11192 ATP-dependent RNA hel 100.0 9E-59 1.9E-63 440.0 40.3 361 47-412 2-368 (434)
16 PLN00206 DEAD-box ATP-dependen 100.0 8.1E-59 1.7E-63 445.5 39.2 364 41-410 116-489 (518)
17 PRK01297 ATP-dependent RNA hel 100.0 1.3E-58 2.9E-63 442.3 39.6 363 46-412 87-458 (475)
18 KOG0333 U5 snRNP-like RNA heli 100.0 4.3E-59 9.4E-64 413.2 32.4 358 37-398 236-627 (673)
19 KOG0340 ATP-dependent RNA heli 100.0 4.4E-59 9.6E-64 394.5 27.2 367 45-415 6-380 (442)
20 KOG0343 RNA Helicase [RNA proc 100.0 7.9E-59 1.7E-63 413.7 28.3 358 46-407 69-434 (758)
21 PTZ00424 helicase 45; Provisio 100.0 5.5E-57 1.2E-61 425.2 40.2 366 45-415 27-393 (401)
22 KOG0329 ATP-dependent RNA heli 100.0 9.6E-60 2.1E-64 381.3 17.5 371 9-415 4-375 (387)
23 KOG0336 ATP-dependent RNA heli 100.0 1.4E-57 3E-62 392.2 28.8 368 41-413 214-589 (629)
24 KOG0335 ATP-dependent RNA heli 100.0 2.2E-57 4.7E-62 406.8 29.8 365 41-409 69-457 (482)
25 KOG0348 ATP-dependent RNA heli 100.0 1.2E-56 2.6E-61 398.4 27.0 366 42-410 132-568 (708)
26 KOG0346 RNA helicase [RNA proc 100.0 3.1E-56 6.8E-61 387.0 25.9 361 46-409 19-423 (569)
27 KOG0332 ATP-dependent RNA heli 100.0 2E-55 4.3E-60 374.6 25.9 361 46-412 90-460 (477)
28 KOG0347 RNA helicase [RNA proc 100.0 1.7E-55 3.6E-60 392.4 21.0 362 43-410 178-584 (731)
29 KOG0341 DEAD-box protein abstr 100.0 1.2E-55 2.6E-60 377.8 17.3 361 45-409 169-542 (610)
30 KOG0339 ATP-dependent RNA heli 100.0 5.5E-52 1.2E-56 366.5 31.2 350 45-398 222-578 (731)
31 KOG0327 Translation initiation 100.0 1E-52 2.2E-57 360.9 25.4 363 47-415 27-389 (397)
32 TIGR03817 DECH_helic helicase/ 100.0 3.8E-51 8.2E-56 404.2 35.5 349 53-413 21-405 (742)
33 KOG0350 DEAD-box ATP-dependent 100.0 5.4E-52 1.2E-56 366.2 25.5 359 47-407 128-552 (620)
34 PLN03137 ATP-dependent DNA hel 100.0 4.5E-50 9.8E-55 394.1 33.9 334 50-398 441-790 (1195)
35 KOG4284 DEAD box protein [Tran 100.0 6.3E-51 1.4E-55 369.3 24.9 357 44-403 23-387 (980)
36 TIGR00614 recQ_fam ATP-depende 100.0 1.1E-49 2.4E-54 379.2 32.8 318 64-398 7-336 (470)
37 KOG0334 RNA helicase [RNA proc 100.0 2.7E-50 5.8E-55 386.1 28.5 363 41-408 360-732 (997)
38 KOG0337 ATP-dependent RNA heli 100.0 1.9E-50 4E-55 349.4 23.7 362 45-411 20-383 (529)
39 PRK11057 ATP-dependent DNA hel 100.0 1.8E-48 3.8E-53 380.1 33.8 326 53-396 9-344 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 7.2E-48 1.6E-52 377.3 31.8 321 59-396 3-332 (591)
41 KOG0344 ATP-dependent RNA heli 100.0 4.4E-48 9.5E-53 349.3 22.7 366 42-409 128-508 (593)
42 PRK13767 ATP-dependent helicas 100.0 7.1E-46 1.5E-50 373.9 33.2 340 53-396 18-399 (876)
43 PRK02362 ski2-like helicase; P 100.0 6.4E-46 1.4E-50 371.3 30.3 335 47-395 2-397 (737)
44 PRK00254 ski2-like helicase; P 100.0 8.8E-45 1.9E-49 362.2 31.9 336 47-395 2-388 (720)
45 COG1201 Lhr Lhr-like helicases 100.0 2E-44 4.4E-49 347.5 28.0 335 53-394 8-361 (814)
46 COG0514 RecQ Superfamily II DN 100.0 2.4E-44 5.2E-49 334.9 27.0 324 59-397 7-339 (590)
47 TIGR00580 mfd transcription-re 100.0 5.4E-43 1.2E-47 349.2 36.5 324 51-395 434-770 (926)
48 PRK01172 ski2-like helicase; P 100.0 5.1E-43 1.1E-47 348.3 30.3 333 47-396 2-379 (674)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.5E-42 7.6E-47 333.9 33.2 316 64-392 12-388 (844)
50 PRK10689 transcription-repair 100.0 4.9E-42 1.1E-46 349.5 34.5 317 56-394 589-918 (1147)
51 PRK10917 ATP-dependent DNA hel 100.0 1.5E-41 3.3E-46 334.9 36.2 320 55-395 248-589 (681)
52 COG1111 MPH1 ERCC4-like helica 100.0 4.1E-42 8.9E-47 306.0 27.8 335 65-407 12-495 (542)
53 TIGR00643 recG ATP-dependent D 100.0 1.4E-41 3.1E-46 333.0 34.3 319 57-393 225-564 (630)
54 PRK09751 putative ATP-dependen 100.0 2.3E-40 5E-45 339.0 30.4 321 88-413 1-404 (1490)
55 PRK09401 reverse gyrase; Revie 100.0 1.2E-39 2.5E-44 332.9 35.2 284 65-367 78-410 (1176)
56 PHA02653 RNA helicase NPH-II; 100.0 2.1E-39 4.5E-44 313.0 29.3 308 71-397 167-516 (675)
57 PHA02558 uvsW UvsW helicase; P 100.0 2E-39 4.4E-44 310.3 26.2 307 67-393 113-450 (501)
58 COG1202 Superfamily II helicas 100.0 6.8E-39 1.5E-43 288.1 24.8 340 43-395 191-553 (830)
59 PRK11664 ATP-dependent RNA hel 100.0 1.6E-38 3.5E-43 314.9 29.4 301 75-395 12-339 (812)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.3E-38 5.1E-43 313.0 29.3 300 75-395 9-336 (819)
61 PRK14701 reverse gyrase; Provi 100.0 2.9E-38 6.3E-43 329.2 30.0 319 57-391 68-452 (1638)
62 PRK12898 secA preprotein trans 100.0 5.3E-38 1.1E-42 298.5 28.8 316 65-395 101-586 (656)
63 COG1204 Superfamily II helicas 100.0 3.1E-38 6.7E-43 309.0 27.1 341 52-402 15-415 (766)
64 TIGR01587 cas3_core CRISPR-ass 100.0 6.2E-38 1.3E-42 290.8 25.3 298 85-394 1-335 (358)
65 PRK13766 Hef nuclease; Provisi 100.0 6E-37 1.3E-41 310.6 33.4 324 65-396 12-480 (773)
66 COG1205 Distinct helicase fami 100.0 2.5E-37 5.5E-42 306.8 29.5 336 54-394 56-421 (851)
67 TIGR01054 rgy reverse gyrase. 100.0 2E-36 4.3E-41 309.8 34.2 293 57-367 67-409 (1171)
68 KOG0351 ATP-dependent DNA heli 100.0 1.9E-37 4.2E-42 305.3 25.3 335 57-405 252-602 (941)
69 PRK09200 preprotein translocas 100.0 7.9E-37 1.7E-41 296.7 28.9 317 65-395 76-541 (790)
70 KOG0354 DEAD-box like helicase 100.0 9.6E-37 2.1E-41 287.5 27.9 319 66-393 60-527 (746)
71 TIGR03714 secA2 accessory Sec 100.0 2.3E-36 5E-41 290.6 28.9 319 68-397 68-539 (762)
72 TIGR00603 rad25 DNA repair hel 100.0 2.4E-36 5.3E-41 290.5 27.0 307 67-398 254-610 (732)
73 TIGR00963 secA preprotein tran 100.0 5.2E-36 1.1E-40 286.3 28.2 318 65-397 54-519 (745)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-35 2.9E-40 271.8 28.9 293 72-380 1-357 (357)
75 KOG0352 ATP-dependent DNA heli 100.0 9.8E-37 2.1E-41 264.9 18.4 328 56-399 6-366 (641)
76 KOG0353 ATP-dependent DNA heli 100.0 5.9E-36 1.3E-40 256.7 21.5 338 45-395 70-467 (695)
77 KOG0349 Putative DEAD-box RNA 100.0 1.2E-35 2.5E-40 258.7 20.4 276 115-394 287-614 (725)
78 PRK04914 ATP-dependent helicas 100.0 7.1E-34 1.5E-38 282.8 29.1 334 68-410 152-617 (956)
79 KOG0952 DNA/RNA helicase MER3/ 100.0 1.4E-34 3.1E-39 276.4 22.2 331 64-404 106-500 (1230)
80 COG1061 SSL2 DNA or RNA helica 100.0 5E-33 1.1E-37 260.9 24.2 291 68-381 36-375 (442)
81 COG1200 RecG RecG-like helicas 100.0 1.3E-31 2.7E-36 249.4 30.3 327 50-397 244-593 (677)
82 PRK05580 primosome assembly pr 100.0 3.6E-31 7.8E-36 260.3 34.7 309 68-395 144-549 (679)
83 PRK11131 ATP-dependent RNA hel 100.0 6.8E-32 1.5E-36 272.4 28.4 297 73-395 79-411 (1294)
84 PRK09694 helicase Cas3; Provis 100.0 5.1E-31 1.1E-35 260.9 28.3 312 67-384 285-664 (878)
85 PLN03142 Probable chromatin-re 100.0 6.3E-31 1.4E-35 262.7 28.0 333 68-410 169-615 (1033)
86 cd00268 DEADc DEAD-box helicas 100.0 3E-31 6.4E-36 226.2 21.5 200 48-250 1-202 (203)
87 KOG0947 Cytoplasmic exosomal R 100.0 3E-31 6.5E-36 251.2 22.3 309 64-394 294-722 (1248)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.2E-30 2.6E-35 264.5 26.3 298 75-395 74-404 (1283)
89 TIGR00595 priA primosomal prot 100.0 1.8E-30 3.8E-35 246.5 25.9 290 87-394 1-380 (505)
90 PRK13104 secA preprotein trans 100.0 6.2E-30 1.3E-34 248.2 27.3 316 68-397 82-589 (896)
91 KOG0951 RNA helicase BRR2, DEA 100.0 2.6E-30 5.7E-35 250.6 22.7 329 55-393 298-700 (1674)
92 PRK12904 preprotein translocas 100.0 1.4E-29 2.9E-34 245.7 27.7 318 65-397 79-575 (830)
93 PRK12906 secA preprotein trans 100.0 1.5E-29 3.1E-34 244.4 24.0 318 65-397 78-555 (796)
94 COG1197 Mfd Transcription-repa 100.0 3.1E-28 6.7E-33 239.3 31.4 322 51-394 577-912 (1139)
95 PRK12899 secA preprotein trans 100.0 2.1E-28 4.5E-33 237.2 27.7 149 49-204 65-229 (970)
96 PRK11448 hsdR type I restricti 100.0 1.3E-28 2.9E-33 250.7 27.0 317 68-393 413-813 (1123)
97 KOG0385 Chromatin remodeling c 100.0 5.6E-29 1.2E-33 231.2 21.9 330 68-408 167-613 (971)
98 COG4098 comFA Superfamily II D 100.0 1.2E-27 2.6E-32 203.1 27.2 313 68-407 97-427 (441)
99 COG4581 Superfamily II RNA hel 100.0 4.5E-28 9.8E-33 238.0 23.4 319 63-396 115-538 (1041)
100 KOG0948 Nuclear exosomal RNA h 100.0 4.3E-28 9.4E-33 224.6 20.7 317 68-403 129-547 (1041)
101 PRK13107 preprotein translocas 100.0 3.8E-27 8.3E-32 228.2 24.3 316 68-397 82-593 (908)
102 KOG0387 Transcription-coupled 99.9 2.5E-26 5.4E-31 214.6 21.7 313 68-391 205-652 (923)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 9.7E-27 2.1E-31 192.6 16.0 165 70-237 1-167 (169)
104 COG1110 Reverse gyrase [DNA re 99.9 5.1E-25 1.1E-29 211.5 27.8 289 59-367 73-417 (1187)
105 COG1643 HrpA HrpA-like helicas 99.9 1.5E-25 3.3E-30 218.9 24.1 307 70-394 52-386 (845)
106 COG1203 CRISPR-associated heli 99.9 7E-26 1.5E-30 225.1 20.0 323 68-395 195-550 (733)
107 KOG0950 DNA polymerase theta/e 99.9 1E-25 2.2E-30 215.2 18.6 343 52-408 207-624 (1008)
108 KOG0920 ATP-dependent RNA heli 99.9 1E-24 2.2E-29 212.3 21.7 318 68-397 173-546 (924)
109 KOG0389 SNF2 family DNA-depend 99.9 8.6E-25 1.9E-29 204.2 19.8 336 68-412 399-906 (941)
110 KOG0384 Chromodomain-helicase 99.9 1.1E-24 2.5E-29 212.0 21.2 337 67-418 369-835 (1373)
111 KOG0922 DEAH-box RNA helicase 99.9 2.3E-24 5E-29 199.2 22.0 308 70-396 53-391 (674)
112 COG1198 PriA Primosomal protei 99.9 3.6E-24 7.9E-29 206.3 22.3 313 68-396 198-604 (730)
113 KOG0390 DNA repair protein, SN 99.9 1.9E-23 4.1E-28 200.2 25.7 316 68-391 238-701 (776)
114 TIGR00348 hsdR type I site-spe 99.9 7.7E-23 1.7E-27 201.5 28.0 299 68-382 238-634 (667)
115 COG4096 HsdR Type I site-speci 99.9 5.8E-24 1.3E-28 201.2 18.4 310 68-398 165-548 (875)
116 KOG1123 RNA polymerase II tran 99.9 5.8E-25 1.3E-29 195.6 10.3 301 66-394 300-649 (776)
117 PRK12900 secA preprotein trans 99.9 1.7E-23 3.8E-28 203.8 20.6 128 268-397 576-713 (1025)
118 KOG1000 Chromatin remodeling p 99.9 5.5E-23 1.2E-27 182.8 21.6 327 68-410 198-619 (689)
119 KOG0926 DEAH-box RNA helicase 99.9 2.8E-23 6.1E-28 194.2 19.8 310 74-398 262-707 (1172)
120 KOG0392 SNF2 family DNA-depend 99.9 3.7E-23 8.1E-28 201.1 20.3 328 68-406 975-1465(1549)
121 TIGR01407 dinG_rel DnaQ family 99.9 1E-21 2.2E-26 199.6 31.9 345 55-408 233-828 (850)
122 KOG0923 mRNA splicing factor A 99.9 5.1E-23 1.1E-27 188.9 19.7 312 67-395 264-606 (902)
123 PRK12326 preprotein translocas 99.9 4E-22 8.6E-27 189.1 26.1 316 65-396 76-548 (764)
124 TIGR00631 uvrb excinuclease AB 99.9 3E-21 6.6E-26 188.0 23.3 130 276-407 428-564 (655)
125 KOG0924 mRNA splicing factor A 99.9 1.2E-21 2.6E-26 180.4 17.3 309 68-394 356-696 (1042)
126 PRK13103 secA preprotein trans 99.9 5.4E-21 1.2E-25 185.9 22.5 315 68-397 82-593 (913)
127 smart00487 DEXDc DEAD-like hel 99.9 1.4E-20 3.1E-25 160.2 19.3 185 64-251 4-189 (201)
128 PRK05298 excinuclease ABC subu 99.9 8.7E-20 1.9E-24 179.3 27.4 134 277-411 433-581 (652)
129 PRK12903 secA preprotein trans 99.9 6.4E-20 1.4E-24 176.7 24.5 316 65-396 76-540 (925)
130 COG4889 Predicted helicase [Ge 99.9 3.1E-22 6.7E-27 188.9 8.5 327 47-382 141-572 (1518)
131 KOG0925 mRNA splicing factor A 99.9 1.7E-20 3.7E-25 166.8 17.4 318 45-394 24-386 (699)
132 COG0556 UvrB Helicase subunit 99.9 4.4E-19 9.6E-24 159.9 26.5 174 222-404 386-565 (663)
133 KOG0391 SNF2 family DNA-depend 99.8 2.4E-19 5.2E-24 173.6 23.3 116 275-390 1261-1380(1958)
134 KOG0386 Chromatin remodeling c 99.8 5.6E-21 1.2E-25 183.1 11.6 316 68-392 394-833 (1157)
135 PRK07246 bifunctional ATP-depe 99.8 1.2E-18 2.5E-23 174.9 28.7 332 64-409 242-798 (820)
136 KOG0949 Predicted helicase, DE 99.8 1.4E-19 3.1E-24 173.0 20.0 157 68-234 511-673 (1330)
137 CHL00122 secA preprotein trans 99.8 1.2E-18 2.6E-23 168.9 24.4 276 65-355 74-491 (870)
138 KOG0388 SNF2 family DNA-depend 99.8 8.5E-20 1.8E-24 169.0 13.8 116 275-390 1029-1147(1185)
139 TIGR03117 cas_csf4 CRISPR-asso 99.8 2.7E-17 5.9E-22 157.9 31.1 125 279-406 462-627 (636)
140 KOG1002 Nucleotide excision re 99.8 9.7E-19 2.1E-23 156.0 19.4 120 287-406 637-760 (791)
141 cd00079 HELICc Helicase superf 99.8 4.7E-19 1E-23 139.9 14.9 118 274-391 12-131 (131)
142 KOG4439 RNA polymerase II tran 99.8 1.5E-18 3.2E-23 160.9 18.3 116 275-390 730-851 (901)
143 PRK08074 bifunctional ATP-depe 99.8 2.9E-17 6.3E-22 167.9 28.4 123 287-409 751-908 (928)
144 KOG0953 Mitochondrial RNA heli 99.8 1.4E-18 3E-23 157.2 16.0 281 83-409 191-486 (700)
145 KOG4150 Predicted ATP-dependen 99.8 5.4E-19 1.2E-23 160.2 12.0 338 59-397 277-642 (1034)
146 PRK12902 secA preprotein trans 99.8 6.3E-17 1.4E-21 156.9 25.2 274 68-355 85-506 (939)
147 PF00271 Helicase_C: Helicase 99.8 4.9E-19 1.1E-23 125.6 7.5 78 306-383 1-78 (78)
148 cd00046 DEXDc DEAD-like helica 99.8 3.7E-17 8.1E-22 130.9 16.2 144 84-232 1-144 (144)
149 PF04851 ResIII: Type III rest 99.7 2.6E-17 5.7E-22 138.1 13.0 155 68-234 3-184 (184)
150 COG1199 DinG Rad3-related DNA 99.7 3.8E-16 8.2E-21 156.2 22.7 130 277-410 469-633 (654)
151 PRK12901 secA preprotein trans 99.7 7.2E-16 1.6E-20 151.2 20.3 125 270-397 608-743 (1112)
152 KOG0951 RNA helicase BRR2, DEA 99.7 2.4E-15 5.1E-20 147.9 22.4 329 68-418 1143-1517(1674)
153 TIGR00604 rad3 DNA repair heli 99.7 1.4E-14 3E-19 145.1 26.9 110 288-398 522-677 (705)
154 PRK11747 dinG ATP-dependent DN 99.7 2.9E-14 6.3E-19 141.6 28.0 106 287-396 533-675 (697)
155 PRK14873 primosome assembly pr 99.7 2.5E-15 5.4E-20 146.5 17.9 140 87-239 164-310 (665)
156 smart00490 HELICc helicase sup 99.7 4E-16 8.7E-21 112.0 8.1 81 303-383 2-82 (82)
157 COG0553 HepA Superfamily II DN 99.7 2.2E-15 4.8E-20 156.8 17.0 333 67-407 337-835 (866)
158 TIGR02562 cas3_yersinia CRISPR 99.7 1.5E-14 3.3E-19 142.8 21.2 320 58-384 398-881 (1110)
159 KOG1015 Transcription regulato 99.6 7.6E-15 1.7E-19 140.5 17.7 117 275-391 1127-1271(1567)
160 PF02399 Herpes_ori_bp: Origin 99.6 3.9E-13 8.4E-18 129.6 19.8 288 85-394 51-387 (824)
161 KOG1016 Predicted DNA helicase 99.5 4.5E-12 9.8E-17 119.5 23.2 115 289-403 720-858 (1387)
162 PF06862 DUF1253: Protein of u 99.5 2.9E-11 6.2E-16 111.0 26.4 238 167-410 132-426 (442)
163 PF07652 Flavi_DEAD: Flaviviru 99.5 3.4E-13 7.4E-18 102.8 10.7 136 83-236 4-140 (148)
164 COG0610 Type I site-specific r 99.5 9.8E-12 2.1E-16 127.0 23.3 139 84-233 274-414 (962)
165 COG0653 SecA Preprotein transl 99.5 2.6E-12 5.6E-17 124.8 17.7 312 68-394 80-544 (822)
166 PF00176 SNF2_N: SNF2 family N 99.4 6.6E-13 1.4E-17 120.5 10.6 146 83-235 25-175 (299)
167 KOG2340 Uncharacterized conser 99.3 1.2E-10 2.7E-15 105.7 14.0 329 66-396 214-669 (698)
168 KOG0921 Dosage compensation co 99.1 1.4E-10 3.1E-15 111.4 8.6 307 76-393 386-772 (1282)
169 smart00488 DEXDc2 DEAD-like he 99.1 7.7E-10 1.7E-14 98.5 11.3 72 65-137 6-84 (289)
170 smart00489 DEXDc3 DEAD-like he 99.1 7.7E-10 1.7E-14 98.5 11.3 72 65-137 6-84 (289)
171 KOG1001 Helicase-like transcri 99.1 7.5E-10 1.6E-14 107.9 10.8 120 290-409 541-665 (674)
172 PF07517 SecA_DEAD: SecA DEAD- 99.0 3.8E-09 8.3E-14 91.4 12.7 130 65-204 75-211 (266)
173 PF13307 Helicase_C_2: Helicas 98.8 2.2E-08 4.8E-13 81.7 7.5 115 281-398 3-153 (167)
174 PRK15483 type III restriction- 98.8 7.3E-08 1.6E-12 96.5 11.9 72 338-409 501-581 (986)
175 COG3587 Restriction endonuclea 98.7 1.7E-06 3.8E-11 83.9 19.2 73 337-409 482-566 (985)
176 KOG0952 DNA/RNA helicase MER3/ 98.7 3.4E-08 7.4E-13 97.2 6.2 131 68-204 927-1060(1230)
177 TIGR00596 rad1 DNA repair prot 98.6 8.1E-07 1.8E-11 89.0 15.7 65 168-233 9-73 (814)
178 PF13086 AAA_11: AAA domain; P 98.6 3E-07 6.6E-12 80.1 10.2 69 68-136 1-75 (236)
179 PF13872 AAA_34: P-loop contai 98.5 4.7E-07 1E-11 78.7 8.4 161 68-238 37-226 (303)
180 PF13604 AAA_30: AAA domain; P 98.5 4.7E-07 1E-11 76.0 7.8 123 68-231 1-130 (196)
181 PF02562 PhoH: PhoH-like prote 98.5 4.9E-07 1.1E-11 75.2 7.5 142 67-231 3-155 (205)
182 KOG1802 RNA helicase nonsense 98.5 4E-07 8.7E-12 85.6 7.5 86 59-151 401-486 (935)
183 KOG1513 Nuclear helicase MOP-3 98.4 1.7E-06 3.8E-11 83.0 8.7 79 331-409 850-939 (1300)
184 PF12340 DUF3638: Protein of u 98.3 2.6E-06 5.7E-11 71.4 7.6 151 48-204 5-186 (229)
185 PF09848 DUF2075: Uncharacteri 98.2 7.9E-06 1.7E-10 75.5 10.2 109 85-218 3-117 (352)
186 PRK10536 hypothetical protein; 98.2 4.6E-05 9.9E-10 65.4 12.3 147 65-229 56-210 (262)
187 PF13245 AAA_19: Part of AAA d 98.1 5.7E-06 1.2E-10 57.2 5.4 50 84-134 11-62 (76)
188 smart00492 HELICc3 helicase su 98.1 2.5E-05 5.4E-10 61.4 9.0 78 317-394 26-137 (141)
189 KOG1803 DNA helicase [Replicat 98.1 1.3E-05 2.8E-10 75.4 7.9 64 68-134 185-249 (649)
190 smart00491 HELICc2 helicase su 98.0 2.4E-05 5.2E-10 61.6 7.9 70 325-394 31-138 (142)
191 TIGR01447 recD exodeoxyribonuc 98.0 3.9E-05 8.4E-10 75.0 11.0 140 71-231 148-295 (586)
192 TIGR01448 recD_rel helicase, p 98.0 4.7E-05 1E-09 76.7 11.8 126 67-231 322-452 (720)
193 PRK10875 recD exonuclease V su 98.0 7.5E-05 1.6E-09 73.2 11.7 140 70-231 154-301 (615)
194 KOG0383 Predicted helicase [Ge 97.9 5.8E-07 1.3E-11 87.1 -3.5 74 277-351 618-696 (696)
195 COG1875 NYN ribonuclease and A 97.8 4E-05 8.7E-10 67.9 6.4 147 64-229 224-385 (436)
196 PF13871 Helicase_C_4: Helicas 97.8 6.4E-05 1.4E-09 65.4 7.6 81 329-409 52-143 (278)
197 KOG1132 Helicase of the DEAD s 97.8 6.7E-05 1.5E-09 73.6 7.2 108 289-397 562-724 (945)
198 PF00580 UvrD-helicase: UvrD/R 97.8 4.1E-05 9E-10 69.9 5.7 122 69-200 1-125 (315)
199 PRK13889 conjugal transfer rel 97.7 0.00031 6.8E-09 72.3 11.8 123 68-231 346-470 (988)
200 KOG0989 Replication factor C, 97.7 0.00014 3E-09 63.0 7.4 47 186-234 125-171 (346)
201 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00074 1.6E-08 68.5 13.2 61 68-131 352-413 (744)
202 KOG0298 DEAD box-containing he 97.6 0.0002 4.3E-09 73.0 7.9 146 83-236 374-554 (1394)
203 PRK13826 Dtr system oriT relax 97.6 0.0009 2E-08 69.5 12.9 138 52-231 366-505 (1102)
204 PRK04296 thymidine kinase; Pro 97.6 0.00015 3.3E-09 60.5 5.7 36 85-123 4-39 (190)
205 KOG1805 DNA replication helica 97.5 0.00058 1.3E-08 67.9 9.6 137 51-204 656-810 (1100)
206 PF13401 AAA_22: AAA domain; P 97.5 0.00034 7.4E-09 54.6 6.4 20 83-102 4-23 (131)
207 COG1419 FlhF Flagellar GTP-bin 97.5 0.0043 9.4E-08 56.7 14.1 135 83-246 203-338 (407)
208 KOG1131 RNA polymerase II tran 97.4 0.00028 6E-09 65.3 5.8 73 65-137 13-90 (755)
209 KOG1133 Helicase of the DEAD s 97.4 0.003 6.5E-08 60.8 12.5 118 278-399 620-784 (821)
210 PRK12723 flagellar biosynthesi 97.4 0.0016 3.5E-08 60.2 10.5 122 84-235 175-300 (388)
211 PRK06526 transposase; Provisio 97.3 0.00065 1.4E-08 59.4 6.7 23 80-102 95-117 (254)
212 PRK14974 cell division protein 97.3 0.003 6.6E-08 57.3 11.1 55 190-244 222-276 (336)
213 PF14617 CMS1: U3-containing 9 97.3 0.00097 2.1E-08 57.4 7.4 87 112-200 124-211 (252)
214 TIGR00376 DNA helicase, putati 97.3 0.0005 1.1E-08 68.3 6.1 66 68-136 157-223 (637)
215 PRK05642 DNA replication initi 97.2 0.00096 2.1E-08 57.8 7.0 45 190-234 97-141 (234)
216 PRK08084 DNA replication initi 97.2 0.0017 3.6E-08 56.4 8.2 18 84-101 46-63 (235)
217 smart00382 AAA ATPases associa 97.2 0.0017 3.7E-08 51.2 7.6 40 83-125 2-41 (148)
218 PF00448 SRP54: SRP54-type pro 97.2 0.0019 4.2E-08 54.0 8.0 55 189-243 82-136 (196)
219 PRK14722 flhF flagellar biosyn 97.2 0.0044 9.6E-08 56.9 10.8 132 83-243 137-269 (374)
220 PRK11054 helD DNA helicase IV; 97.2 0.0021 4.6E-08 64.3 9.5 83 66-151 194-277 (684)
221 PRK11889 flhF flagellar biosyn 97.1 0.0073 1.6E-07 55.4 11.8 131 84-244 242-375 (436)
222 PRK08181 transposase; Validate 97.1 0.0019 4.2E-08 56.7 7.9 46 81-130 104-149 (269)
223 PRK06893 DNA replication initi 97.1 0.0016 3.4E-08 56.3 7.0 47 189-235 90-137 (229)
224 cd00009 AAA The AAA+ (ATPases 97.1 0.0053 1.2E-07 48.6 9.4 18 83-100 19-36 (151)
225 PRK10919 ATP-dependent DNA hel 97.0 0.00085 1.8E-08 67.5 5.3 70 68-139 2-72 (672)
226 TIGR02760 TraI_TIGR conjugativ 97.0 0.054 1.2E-06 61.0 19.3 236 68-338 429-686 (1960)
227 PRK05703 flhF flagellar biosyn 97.0 0.015 3.2E-07 55.0 12.7 129 83-243 221-354 (424)
228 PF05970 PIF1: PIF1-like helic 97.0 0.0021 4.5E-08 59.7 6.9 59 69-130 2-66 (364)
229 TIGR01075 uvrD DNA helicase II 97.0 0.0024 5.2E-08 65.1 7.9 83 67-151 3-87 (715)
230 PRK08727 hypothetical protein; 96.9 0.0023 5E-08 55.4 6.5 47 190-236 93-140 (233)
231 COG3421 Uncharacterized protei 96.9 0.00087 1.9E-08 63.3 3.8 144 89-235 3-168 (812)
232 PRK11773 uvrD DNA-dependent he 96.9 0.0028 6.1E-08 64.6 7.7 82 68-151 9-92 (721)
233 PHA02533 17 large terminase pr 96.9 0.0087 1.9E-07 58.1 10.4 123 68-203 59-182 (534)
234 PF00308 Bac_DnaA: Bacterial d 96.7 0.0068 1.5E-07 51.9 7.5 48 189-236 96-144 (219)
235 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.007 1.5E-07 52.3 7.5 20 82-101 37-56 (226)
236 PF05876 Terminase_GpA: Phage 96.7 0.0087 1.9E-07 58.7 8.8 127 68-204 16-148 (557)
237 PF05127 Helicase_RecD: Helica 96.6 0.0027 5.8E-08 51.7 4.4 123 87-233 1-124 (177)
238 TIGR01074 rep ATP-dependent DN 96.6 0.0032 6.9E-08 63.8 5.8 69 69-139 2-71 (664)
239 PRK05707 DNA polymerase III su 96.6 0.016 3.4E-07 52.8 9.5 40 68-107 3-46 (328)
240 COG1435 Tdk Thymidine kinase [ 96.6 0.0071 1.5E-07 49.3 6.4 89 85-202 6-94 (201)
241 PRK14712 conjugal transfer nic 96.6 0.012 2.7E-07 63.5 9.8 62 68-130 835-900 (1623)
242 PF03354 Terminase_1: Phage Te 96.6 0.0083 1.8E-07 58.0 8.0 135 84-229 23-160 (477)
243 KOG0701 dsRNA-specific nucleas 96.5 0.0024 5.2E-08 68.0 4.2 94 290-383 294-399 (1606)
244 PRK12402 replication factor C 96.5 0.02 4.4E-07 52.7 10.0 40 189-230 124-163 (337)
245 PRK14956 DNA polymerase III su 96.5 0.0098 2.1E-07 56.3 7.7 23 84-106 41-63 (484)
246 PRK13709 conjugal transfer nic 96.5 0.02 4.3E-07 62.8 10.8 62 68-130 967-1032(1747)
247 PRK14964 DNA polymerase III su 96.5 0.018 4E-07 55.0 9.3 39 189-229 115-153 (491)
248 PRK14087 dnaA chromosomal repl 96.5 0.008 1.7E-07 57.4 7.0 47 84-132 142-188 (450)
249 PRK00149 dnaA chromosomal repl 96.5 0.015 3.3E-07 55.8 9.0 44 84-129 149-192 (450)
250 PRK07764 DNA polymerase III su 96.4 0.019 4.2E-07 58.6 9.8 39 189-229 119-157 (824)
251 KOG0991 Replication factor C, 96.4 0.0058 1.3E-07 51.1 4.9 39 188-228 111-149 (333)
252 PRK08116 hypothetical protein; 96.4 0.023 5E-07 50.2 9.0 43 84-130 115-157 (268)
253 cd01124 KaiC KaiC is a circadi 96.4 0.037 8E-07 46.1 9.9 48 86-137 2-49 (187)
254 PF13173 AAA_14: AAA domain 96.4 0.046 9.9E-07 42.4 9.7 37 190-231 61-97 (128)
255 PRK07003 DNA polymerase III su 96.4 0.022 4.7E-07 56.8 9.4 40 189-230 118-157 (830)
256 PRK12422 chromosomal replicati 96.4 0.017 3.7E-07 54.9 8.6 48 190-237 202-250 (445)
257 PRK14088 dnaA chromosomal repl 96.4 0.035 7.7E-07 52.9 10.8 38 84-122 131-168 (440)
258 PF02456 Adeno_IVa2: Adenoviru 96.4 0.014 3E-07 51.0 7.1 40 86-126 90-129 (369)
259 cd01120 RecA-like_NTPases RecA 96.4 0.033 7.2E-07 45.0 9.4 37 86-125 2-38 (165)
260 TIGR01073 pcrA ATP-dependent D 96.3 0.011 2.5E-07 60.4 7.8 82 68-151 4-87 (726)
261 PLN03025 replication factor C 96.3 0.036 7.8E-07 50.6 10.3 38 190-229 99-136 (319)
262 PTZ00112 origin recognition co 96.3 0.057 1.2E-06 54.6 12.0 17 86-102 784-800 (1164)
263 PRK06731 flhF flagellar biosyn 96.3 0.09 2E-06 46.3 12.0 132 83-244 75-209 (270)
264 PRK14723 flhF flagellar biosyn 96.3 0.043 9.3E-07 55.1 11.0 129 84-243 186-317 (767)
265 PF13177 DNA_pol3_delta2: DNA 96.2 0.017 3.7E-07 46.8 6.7 44 189-234 101-144 (162)
266 TIGR02785 addA_Gpos recombinat 96.2 0.016 3.5E-07 62.6 8.4 123 69-201 2-126 (1232)
267 PRK14721 flhF flagellar biosyn 96.2 0.078 1.7E-06 49.7 11.7 125 83-236 191-315 (420)
268 TIGR00362 DnaA chromosomal rep 96.2 0.026 5.6E-07 53.5 8.8 37 84-121 137-173 (405)
269 KOG0739 AAA+-type ATPase [Post 96.2 0.18 3.8E-06 44.2 12.7 78 46-136 130-212 (439)
270 PRK00771 signal recognition pa 96.1 0.04 8.7E-07 52.1 9.4 53 192-244 177-229 (437)
271 PRK07952 DNA replication prote 96.1 0.039 8.5E-07 47.8 8.7 34 84-120 100-133 (244)
272 TIGR02881 spore_V_K stage V sp 96.1 0.036 7.8E-07 49.0 8.7 18 84-101 43-60 (261)
273 PRK06835 DNA replication prote 96.1 0.013 2.7E-07 53.4 5.7 44 83-130 183-226 (329)
274 PRK06921 hypothetical protein; 96.1 0.025 5.4E-07 49.9 7.4 44 83-129 117-160 (266)
275 PRK12377 putative replication 96.0 0.032 6.9E-07 48.5 7.8 44 84-131 102-145 (248)
276 PRK14958 DNA polymerase III su 96.0 0.043 9.3E-07 53.2 9.5 39 189-229 118-156 (509)
277 PRK13833 conjugal transfer pro 96.0 0.0095 2.1E-07 53.8 4.6 66 58-126 120-186 (323)
278 PRK08903 DnaA regulatory inact 96.0 0.053 1.1E-06 46.8 9.1 18 83-100 42-59 (227)
279 PRK08451 DNA polymerase III su 96.0 0.071 1.5E-06 51.6 10.6 39 189-229 116-154 (535)
280 PRK14949 DNA polymerase III su 95.9 0.033 7.1E-07 56.6 8.5 38 189-228 118-155 (944)
281 PRK13894 conjugal transfer ATP 95.9 0.0088 1.9E-07 54.1 4.2 67 57-126 123-190 (319)
282 PRK14873 primosome assembly pr 95.9 0.12 2.6E-06 51.7 12.3 125 274-401 172-308 (665)
283 PRK14960 DNA polymerase III su 95.9 0.035 7.7E-07 54.5 8.4 39 189-229 117-155 (702)
284 PTZ00293 thymidine kinase; Pro 95.9 0.039 8.5E-07 46.3 7.6 39 83-124 4-42 (211)
285 TIGR01547 phage_term_2 phage t 95.9 0.029 6.3E-07 53.0 7.8 146 86-244 4-152 (396)
286 PRK14961 DNA polymerase III su 95.9 0.046 9.9E-07 50.9 9.0 39 189-229 118-156 (363)
287 PRK14952 DNA polymerase III su 95.9 0.065 1.4E-06 52.7 10.3 39 189-229 117-155 (584)
288 PRK12323 DNA polymerase III su 95.9 0.045 9.8E-07 53.7 9.0 41 189-231 123-163 (700)
289 PRK12726 flagellar biosynthesi 95.9 0.099 2.1E-06 48.0 10.5 121 83-233 206-328 (407)
290 PRK14951 DNA polymerase III su 95.9 0.061 1.3E-06 53.1 9.9 39 189-229 123-161 (618)
291 PF05496 RuvB_N: Holliday junc 95.9 0.041 9E-07 46.4 7.4 47 43-101 18-68 (233)
292 TIGR01425 SRP54_euk signal rec 95.8 0.087 1.9E-06 49.5 10.3 54 190-243 182-235 (429)
293 PHA03372 DNA packaging termina 95.8 0.088 1.9E-06 50.8 10.3 127 84-231 203-336 (668)
294 PRK00411 cdc6 cell division co 95.8 0.061 1.3E-06 50.8 9.6 18 84-101 56-73 (394)
295 PHA03368 DNA packaging termina 95.8 0.036 7.7E-07 54.1 7.8 135 82-232 253-390 (738)
296 PF05621 TniB: Bacterial TniB 95.8 0.045 9.8E-07 48.4 7.8 42 189-231 144-188 (302)
297 PRK08769 DNA polymerase III su 95.8 0.072 1.6E-06 48.2 9.4 140 67-232 3-153 (319)
298 PRK14086 dnaA chromosomal repl 95.8 0.049 1.1E-06 53.3 8.8 47 190-236 377-424 (617)
299 PHA03333 putative ATPase subun 95.8 0.087 1.9E-06 51.8 10.3 137 82-232 186-332 (752)
300 PHA02544 44 clamp loader, smal 95.8 0.068 1.5E-06 48.8 9.4 39 190-229 100-138 (316)
301 COG1444 Predicted P-loop ATPas 95.8 0.041 8.9E-07 54.8 8.2 152 58-233 204-357 (758)
302 TIGR02760 TraI_TIGR conjugativ 95.8 0.039 8.4E-07 62.0 9.0 62 67-130 1018-1084(1960)
303 PF06745 KaiC: KaiC; InterPro 95.7 0.012 2.5E-07 50.9 4.0 134 82-231 18-159 (226)
304 COG0470 HolB ATPase involved i 95.7 0.051 1.1E-06 49.8 8.5 40 189-230 108-147 (325)
305 cd01122 GP4d_helicase GP4d_hel 95.7 0.096 2.1E-06 46.6 10.0 55 77-134 24-78 (271)
306 PRK14955 DNA polymerase III su 95.7 0.092 2E-06 49.5 10.1 22 84-105 39-60 (397)
307 PRK09111 DNA polymerase III su 95.7 0.095 2.1E-06 51.8 10.5 40 188-229 130-169 (598)
308 COG0593 DnaA ATPase involved i 95.7 0.085 1.8E-06 49.0 9.4 48 190-237 175-223 (408)
309 PRK05563 DNA polymerase III su 95.7 0.092 2E-06 51.7 10.3 49 45-105 12-60 (559)
310 PRK14963 DNA polymerase III su 95.6 0.06 1.3E-06 52.1 8.8 19 85-103 38-56 (504)
311 PRK09183 transposase/IS protei 95.6 0.071 1.5E-06 46.9 8.6 24 80-103 99-122 (259)
312 TIGR00678 holB DNA polymerase 95.6 0.041 8.8E-07 45.9 6.7 40 188-229 94-133 (188)
313 TIGR02782 TrbB_P P-type conjug 95.6 0.019 4.2E-07 51.6 4.9 74 50-126 100-174 (299)
314 PRK14962 DNA polymerase III su 95.6 0.069 1.5E-06 51.2 8.9 19 85-103 38-56 (472)
315 PRK12724 flagellar biosynthesi 95.6 0.17 3.7E-06 47.2 11.0 55 189-243 298-356 (432)
316 PF00004 AAA: ATPase family as 95.6 0.11 2.3E-06 40.3 8.7 15 86-100 1-15 (132)
317 CHL00181 cbbX CbbX; Provisiona 95.5 0.11 2.3E-06 46.6 9.3 20 83-102 59-78 (287)
318 PRK14959 DNA polymerase III su 95.5 0.064 1.4E-06 52.7 8.4 24 84-107 39-62 (624)
319 PRK07994 DNA polymerase III su 95.5 0.096 2.1E-06 52.0 9.6 39 189-229 118-156 (647)
320 TIGR00064 ftsY signal recognit 95.5 0.23 5E-06 44.0 11.2 56 189-244 153-214 (272)
321 COG2909 MalT ATP-dependent tra 95.5 0.16 3.5E-06 50.9 10.9 43 191-234 130-172 (894)
322 PRK06995 flhF flagellar biosyn 95.4 0.12 2.5E-06 49.5 9.6 23 83-105 256-278 (484)
323 COG3973 Superfamily I DNA and 95.4 0.07 1.5E-06 51.1 7.9 85 53-138 189-284 (747)
324 PRK05896 DNA polymerase III su 95.4 0.12 2.6E-06 50.6 9.8 39 189-229 118-156 (605)
325 COG3972 Superfamily I DNA and 95.4 0.16 3.4E-06 47.6 9.9 79 57-138 152-230 (660)
326 PRK12727 flagellar biosynthesi 95.4 0.19 4.2E-06 48.3 10.9 21 82-102 349-369 (559)
327 PRK08691 DNA polymerase III su 95.4 0.13 2.8E-06 51.1 10.0 39 189-229 118-156 (709)
328 COG2256 MGS1 ATPase related to 95.3 0.089 1.9E-06 48.0 8.1 18 84-101 49-66 (436)
329 PRK08533 flagellar accessory p 95.3 0.27 5.8E-06 42.5 11.0 52 82-137 23-74 (230)
330 TIGR03499 FlhF flagellar biosy 95.3 0.089 1.9E-06 47.0 8.1 22 83-104 194-215 (282)
331 COG4962 CpaF Flp pilus assembl 95.2 0.032 7E-07 49.9 5.0 73 48-126 139-212 (355)
332 COG2804 PulE Type II secretory 95.2 0.021 4.5E-07 53.8 4.0 42 70-112 243-286 (500)
333 KOG0298 DEAD box-containing he 95.2 0.029 6.4E-07 58.0 5.1 98 287-389 1220-1318(1394)
334 PRK09112 DNA polymerase III su 95.2 0.069 1.5E-06 49.2 7.2 41 189-231 140-180 (351)
335 PRK07471 DNA polymerase III su 95.2 0.093 2E-06 48.6 8.1 42 189-232 140-181 (365)
336 PRK08699 DNA polymerase III su 95.2 0.15 3.3E-06 46.4 9.4 41 189-231 112-152 (325)
337 PRK06871 DNA polymerase III su 95.2 0.12 2.6E-06 46.8 8.6 41 189-231 106-146 (325)
338 PRK06964 DNA polymerase III su 95.2 0.14 3E-06 46.8 9.0 41 189-231 131-171 (342)
339 PRK00440 rfc replication facto 95.1 0.26 5.7E-06 44.9 11.1 38 190-229 102-139 (319)
340 PRK10867 signal recognition pa 95.1 0.26 5.6E-06 46.6 10.9 21 85-105 102-122 (433)
341 PRK14965 DNA polymerase III su 95.1 0.077 1.7E-06 52.5 7.9 39 189-229 118-156 (576)
342 PRK07940 DNA polymerase III su 95.1 0.15 3.3E-06 47.7 9.4 41 189-231 116-156 (394)
343 PRK10917 ATP-dependent DNA hel 95.1 0.14 3E-06 51.9 9.8 76 287-362 309-389 (681)
344 PRK06645 DNA polymerase III su 95.1 0.1 2.2E-06 50.5 8.2 21 84-104 44-64 (507)
345 cd00984 DnaB_C DnaB helicase C 95.0 0.14 3.1E-06 44.6 8.7 39 81-121 11-49 (242)
346 PRK05580 primosome assembly pr 95.0 0.14 3.1E-06 51.8 9.5 76 288-364 190-266 (679)
347 PRK13342 recombination factor 95.0 0.19 4.2E-06 47.7 9.9 18 84-101 37-54 (413)
348 PRK14969 DNA polymerase III su 94.9 0.16 3.5E-06 49.6 9.4 39 189-229 118-156 (527)
349 cd01121 Sms Sms (bacterial rad 94.9 0.18 4E-06 46.8 9.2 51 83-137 82-132 (372)
350 TIGR00595 priA primosomal prot 94.9 0.23 5.1E-06 48.3 10.3 76 288-364 25-101 (505)
351 PRK04195 replication factor C 94.9 0.13 2.8E-06 49.9 8.6 49 44-101 9-57 (482)
352 PRK14957 DNA polymerase III su 94.9 0.11 2.4E-06 50.6 8.0 39 189-229 118-156 (546)
353 TIGR00959 ffh signal recogniti 94.9 0.28 6.1E-06 46.3 10.4 22 85-106 101-122 (428)
354 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.37 8E-06 41.6 10.6 52 82-137 19-70 (229)
355 TIGR03600 phage_DnaB phage rep 94.8 0.18 4E-06 48.0 9.3 40 80-121 191-230 (421)
356 KOG2028 ATPase related to the 94.8 0.21 4.6E-06 45.0 8.7 17 84-100 163-179 (554)
357 PRK06067 flagellar accessory p 94.7 0.44 9.5E-06 41.3 10.7 51 83-137 25-75 (234)
358 PRK11331 5-methylcytosine-spec 94.7 0.064 1.4E-06 50.4 5.7 30 72-101 183-212 (459)
359 PHA00729 NTP-binding motif con 94.7 0.23 5E-06 42.2 8.5 77 168-244 60-140 (226)
360 PRK10416 signal recognition pa 94.7 0.57 1.2E-05 42.6 11.6 56 189-244 195-256 (318)
361 PRK14954 DNA polymerase III su 94.6 0.17 3.7E-06 50.2 8.7 40 188-229 125-164 (620)
362 cd03115 SRP The signal recogni 94.6 0.49 1.1E-05 38.7 10.4 54 189-242 81-134 (173)
363 PRK06090 DNA polymerase III su 94.6 0.22 4.9E-06 45.0 8.7 43 188-232 106-148 (319)
364 PRK13341 recombination factor 94.5 0.25 5.4E-06 50.1 9.8 18 84-101 53-70 (725)
365 cd00561 CobA_CobO_BtuR ATP:cor 94.5 0.6 1.3E-05 37.4 10.0 53 188-240 93-146 (159)
366 PRK07993 DNA polymerase III su 94.5 0.24 5.2E-06 45.3 8.8 135 69-231 3-147 (334)
367 COG1198 PriA Primosomal protei 94.5 0.12 2.5E-06 51.9 7.1 91 270-361 225-318 (730)
368 COG0378 HypB Ni2+-binding GTPa 94.5 1.9 4.1E-05 35.6 12.7 34 210-243 163-196 (202)
369 PF01695 IstB_IS21: IstB-like 94.5 0.034 7.4E-07 45.8 3.0 46 81-130 45-90 (178)
370 PF05707 Zot: Zonular occluden 94.4 0.23 5E-06 41.6 8.0 51 190-241 79-134 (193)
371 COG2805 PilT Tfp pilus assembl 94.4 0.086 1.9E-06 46.2 5.3 27 86-113 128-154 (353)
372 PF05729 NACHT: NACHT domain 94.4 0.85 1.8E-05 36.7 11.2 16 86-101 3-18 (166)
373 PRK14948 DNA polymerase III su 94.3 0.26 5.7E-06 49.1 9.3 23 84-106 39-61 (620)
374 KOG0742 AAA+-type ATPase [Post 94.3 0.13 2.9E-06 47.0 6.4 47 47-100 353-401 (630)
375 TIGR03015 pepcterm_ATPase puta 94.3 0.67 1.5E-05 41.1 11.2 33 69-101 24-61 (269)
376 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.082 1.8E-06 46.0 5.0 51 83-137 21-71 (237)
377 PRK13851 type IV secretion sys 94.2 0.05 1.1E-06 49.8 3.8 41 82-126 161-201 (344)
378 PRK05973 replicative DNA helic 94.2 0.13 2.9E-06 44.2 6.0 65 68-137 50-114 (237)
379 TIGR00643 recG ATP-dependent D 94.1 0.17 3.6E-06 50.9 7.7 76 287-362 283-363 (630)
380 TIGR02525 plasmid_TraJ plasmid 94.1 0.1 2.3E-06 48.2 5.6 26 83-109 149-174 (372)
381 COG1110 Reverse gyrase [DNA re 94.0 0.22 4.9E-06 50.8 8.0 71 277-347 114-190 (1187)
382 COG4626 Phage terminase-like p 94.0 0.18 4E-06 48.1 7.0 148 68-230 61-223 (546)
383 KOG0730 AAA+-type ATPase [Post 93.9 0.43 9.4E-06 46.5 9.4 57 41-100 426-485 (693)
384 COG0552 FtsY Signal recognitio 93.9 1.1 2.3E-05 40.3 11.2 56 189-244 220-281 (340)
385 PF03969 AFG1_ATPase: AFG1-lik 93.9 1.1 2.3E-05 41.6 11.9 110 83-236 62-172 (362)
386 PF03796 DnaB_C: DnaB-like hel 93.9 0.17 3.6E-06 44.7 6.5 39 82-122 18-56 (259)
387 PRK06904 replicative DNA helic 93.9 0.42 9.1E-06 46.0 9.5 115 83-204 221-348 (472)
388 PRK06647 DNA polymerase III su 93.9 0.31 6.8E-06 47.9 8.7 19 84-102 39-57 (563)
389 KOG0744 AAA+-type ATPase [Post 93.9 0.15 3.3E-06 45.2 5.8 93 48-141 141-248 (423)
390 KOG0738 AAA+-type ATPase [Post 93.8 0.15 3.2E-06 46.3 5.8 16 84-99 246-261 (491)
391 KOG0344 ATP-dependent RNA heli 93.8 0.89 1.9E-05 43.6 11.1 101 90-201 364-467 (593)
392 TIGR02928 orc1/cdc6 family rep 93.8 0.24 5.2E-06 46.3 7.6 17 84-100 41-57 (365)
393 PRK14950 DNA polymerase III su 93.8 0.4 8.7E-06 47.7 9.5 21 84-104 39-59 (585)
394 TIGR00580 mfd transcription-re 93.8 0.38 8.2E-06 50.3 9.5 76 287-362 499-579 (926)
395 PRK07004 replicative DNA helic 93.8 0.35 7.6E-06 46.5 8.7 115 82-204 212-338 (460)
396 PRK05748 replicative DNA helic 93.6 0.5 1.1E-05 45.4 9.6 113 83-203 203-327 (448)
397 PF01637 Arch_ATPase: Archaeal 93.6 0.15 3.3E-06 43.9 5.6 41 192-232 120-165 (234)
398 PRK10436 hypothetical protein; 93.6 0.087 1.9E-06 50.3 4.2 39 70-109 203-243 (462)
399 PRK09376 rho transcription ter 93.5 0.6 1.3E-05 43.2 9.3 30 70-99 153-185 (416)
400 PRK08006 replicative DNA helic 93.5 0.68 1.5E-05 44.6 10.2 114 83-203 224-349 (471)
401 PRK04841 transcriptional regul 93.5 0.62 1.4E-05 49.4 10.9 43 191-234 122-164 (903)
402 PF01443 Viral_helicase1: Vira 93.4 0.12 2.5E-06 44.9 4.5 14 86-99 1-14 (234)
403 TIGR02397 dnaX_nterm DNA polym 93.4 0.5 1.1E-05 43.9 9.0 18 84-101 37-54 (355)
404 PRK08506 replicative DNA helic 93.3 0.66 1.4E-05 44.8 9.8 113 83-204 192-316 (472)
405 PRK13900 type IV secretion sys 93.3 0.097 2.1E-06 47.8 4.0 41 82-126 159-199 (332)
406 COG1484 DnaC DNA replication p 93.3 0.068 1.5E-06 46.8 2.9 49 82-134 104-152 (254)
407 KOG1133 Helicase of the DEAD s 93.3 0.05 1.1E-06 52.8 2.1 38 68-105 15-56 (821)
408 PRK14953 DNA polymerase III su 93.3 0.55 1.2E-05 45.4 9.3 18 85-102 40-57 (486)
409 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.17 3.7E-06 46.7 5.6 27 82-109 133-159 (358)
410 TIGR00665 DnaB replicative DNA 93.3 0.64 1.4E-05 44.5 9.7 51 83-136 195-245 (434)
411 PRK05986 cob(I)alamin adenolsy 93.3 1.3 2.7E-05 36.7 10.0 145 81-240 20-166 (191)
412 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.22 4.7E-06 43.9 6.0 37 82-121 35-71 (259)
413 PRK08840 replicative DNA helic 93.3 0.71 1.5E-05 44.4 9.8 54 79-135 213-266 (464)
414 COG1219 ClpX ATP-dependent pro 93.2 0.053 1.1E-06 47.8 1.9 20 81-100 95-114 (408)
415 cd01130 VirB11-like_ATPase Typ 93.2 0.15 3.2E-06 42.5 4.6 32 69-100 10-42 (186)
416 PRK07133 DNA polymerase III su 93.2 0.58 1.3E-05 47.1 9.3 39 189-229 117-155 (725)
417 PF03237 Terminase_6: Terminas 93.1 1.8 3.9E-05 40.3 12.5 42 87-129 1-42 (384)
418 KOG1132 Helicase of the DEAD s 93.1 1.4 3E-05 44.6 11.6 71 68-138 21-134 (945)
419 cd01126 TraG_VirD4 The TraG/Tr 93.1 0.11 2.4E-06 48.8 4.2 47 85-136 1-47 (384)
420 COG0210 UvrD Superfamily I DNA 92.9 0.18 4E-06 51.1 5.7 70 68-139 2-72 (655)
421 TIGR02639 ClpA ATP-dependent C 92.9 0.79 1.7E-05 47.1 10.2 18 83-100 203-220 (731)
422 PRK08058 DNA polymerase III su 92.8 0.3 6.6E-06 44.7 6.4 42 188-231 108-149 (329)
423 KOG0733 Nuclear AAA ATPase (VC 92.7 0.099 2.1E-06 50.3 3.2 61 37-100 499-562 (802)
424 PRK09087 hypothetical protein; 92.6 0.45 9.9E-06 40.9 6.9 18 83-100 44-61 (226)
425 PRK11823 DNA repair protein Ra 92.6 0.64 1.4E-05 44.5 8.6 51 83-137 80-130 (446)
426 PRK10689 transcription-repair 92.5 0.48 1E-05 50.8 8.3 76 287-362 648-728 (1147)
427 PRK14970 DNA polymerase III su 92.5 1.3 2.8E-05 41.4 10.4 46 45-102 13-58 (367)
428 PRK06305 DNA polymerase III su 92.5 0.68 1.5E-05 44.4 8.6 39 189-229 120-158 (451)
429 PF02534 T4SS-DNA_transf: Type 92.4 0.19 4.2E-06 48.7 5.0 49 84-137 45-93 (469)
430 TIGR01243 CDC48 AAA family ATP 92.4 1.2 2.5E-05 46.0 10.7 54 44-100 448-504 (733)
431 PRK04328 hypothetical protein; 92.4 0.23 5.1E-06 43.4 5.0 51 83-137 23-73 (249)
432 TIGR00767 rho transcription te 92.3 0.49 1.1E-05 44.0 7.0 26 82-108 167-192 (415)
433 KOG0741 AAA+-type ATPase [Post 92.3 0.26 5.6E-06 46.7 5.2 70 49-123 492-573 (744)
434 COG1474 CDC6 Cdc6-related prot 92.3 0.87 1.9E-05 42.2 8.7 25 84-109 43-67 (366)
435 COG1132 MdlB ABC-type multidru 92.3 1.4 3E-05 43.9 10.9 37 80-119 352-388 (567)
436 TIGR02533 type_II_gspE general 92.3 0.18 3.9E-06 48.7 4.4 39 70-109 227-267 (486)
437 PRK13764 ATPase; Provisional 92.2 0.22 4.7E-06 49.0 4.9 26 83-109 257-282 (602)
438 cd01131 PilT Pilus retraction 92.2 0.18 3.9E-06 42.4 3.9 35 86-122 4-38 (198)
439 PF00437 T2SE: Type II/IV secr 92.2 0.13 2.8E-06 45.7 3.2 42 82-126 126-167 (270)
440 PRK08760 replicative DNA helic 92.2 0.62 1.3E-05 45.0 7.9 112 83-203 229-352 (476)
441 TIGR00602 rad24 checkpoint pro 92.1 1.8 3.8E-05 43.3 11.1 52 41-100 76-127 (637)
442 PHA00012 I assembly protein 92.1 0.54 1.2E-05 42.1 6.7 26 86-111 4-29 (361)
443 TIGR01243 CDC48 AAA family ATP 92.1 1.1 2.5E-05 46.0 10.2 53 45-100 174-229 (733)
444 PRK13897 type IV secretion sys 92.0 0.25 5.4E-06 48.9 5.1 49 84-137 159-207 (606)
445 cd01129 PulE-GspE PulE/GspE Th 92.0 0.24 5.2E-06 43.7 4.5 46 60-109 58-105 (264)
446 PRK07399 DNA polymerase III su 92.0 0.77 1.7E-05 41.7 7.9 40 189-231 123-162 (314)
447 TIGR03819 heli_sec_ATPase heli 91.9 0.2 4.2E-06 46.0 4.1 64 57-126 153-217 (340)
448 PF06733 DEAD_2: DEAD_2; Inte 91.9 0.1 2.2E-06 42.9 2.1 38 167-204 120-159 (174)
449 KOG0732 AAA+-type ATPase conta 91.9 1.3 2.8E-05 46.2 9.9 61 39-100 255-316 (1080)
450 KOG2228 Origin recognition com 91.8 3.4 7.4E-05 37.2 11.2 17 83-99 49-65 (408)
451 COG2255 RuvB Holliday junction 91.8 0.3 6.6E-06 42.5 4.7 51 43-101 20-70 (332)
452 PRK11034 clpA ATP-dependent Cl 91.7 0.69 1.5E-05 47.3 8.0 18 83-100 207-224 (758)
453 COG1485 Predicted ATPase [Gene 91.7 1.1 2.4E-05 40.5 8.3 109 84-236 66-175 (367)
454 TIGR02538 type_IV_pilB type IV 91.7 0.21 4.5E-06 49.4 4.2 39 70-109 301-341 (564)
455 PRK10865 protein disaggregatio 91.6 0.46 1E-05 49.5 6.8 18 84-101 200-217 (857)
456 COG1200 RecG RecG-like helicas 91.6 0.57 1.2E-05 46.0 6.8 87 276-362 298-390 (677)
457 PRK14971 DNA polymerase III su 91.5 1.7 3.7E-05 43.4 10.4 40 188-229 119-158 (614)
458 PRK09165 replicative DNA helic 91.5 1.9 4.1E-05 42.0 10.4 115 83-204 217-355 (497)
459 COG1197 Mfd Transcription-repa 91.5 0.79 1.7E-05 48.0 8.1 76 287-362 642-722 (1139)
460 PF12846 AAA_10: AAA-like doma 91.4 0.19 4E-06 45.4 3.4 41 83-126 1-41 (304)
461 cd01393 recA_like RecA is a b 91.3 0.78 1.7E-05 39.4 7.1 42 83-124 19-63 (226)
462 COG1074 RecB ATP-dependent exo 91.2 0.29 6.4E-06 52.6 5.0 57 82-138 15-73 (1139)
463 PRK05636 replicative DNA helic 91.2 1 2.2E-05 43.7 8.3 22 83-104 265-286 (505)
464 PF13481 AAA_25: AAA domain; P 91.2 0.57 1.2E-05 39.1 5.9 64 74-138 22-93 (193)
465 TIGR02858 spore_III_AA stage I 91.1 1.7 3.6E-05 38.5 8.9 16 84-99 112-127 (270)
466 PF13555 AAA_29: P-loop contai 91.1 0.19 4E-06 33.0 2.2 18 83-100 23-40 (62)
467 TIGR02784 addA_alphas double-s 91.1 0.47 1E-05 51.4 6.5 57 83-139 10-66 (1141)
468 TIGR02238 recomb_DMC1 meiotic 91.0 0.92 2E-05 41.1 7.3 41 84-124 97-140 (313)
469 TIGR02868 CydC thiol reductant 90.9 0.63 1.4E-05 45.9 6.8 20 80-99 358-377 (529)
470 PHA02542 41 41 helicase; Provi 90.9 0.59 1.3E-05 45.0 6.3 35 84-121 191-225 (473)
471 PF04665 Pox_A32: Poxvirus A32 90.8 0.34 7.4E-06 41.7 4.2 36 85-123 15-50 (241)
472 COG3267 ExeA Type II secretory 90.8 1.5 3.2E-05 37.8 7.8 41 82-126 49-90 (269)
473 KOG0740 AAA+-type ATPase [Post 90.8 1.2 2.7E-05 41.6 8.0 17 84-100 187-203 (428)
474 COG0630 VirB11 Type IV secreto 90.8 0.33 7.2E-06 44.0 4.2 56 67-126 126-182 (312)
475 TIGR01420 pilT_fam pilus retra 90.7 0.39 8.6E-06 44.3 4.8 41 83-125 122-162 (343)
476 COG1855 ATPase (PilT family) [ 90.6 0.3 6.4E-06 45.4 3.7 47 46-111 244-290 (604)
477 TIGR00763 lon ATP-dependent pr 90.5 1.5 3.3E-05 45.4 9.2 18 83-100 347-364 (775)
478 COG0467 RAD55 RecA-superfamily 90.4 0.49 1.1E-05 41.8 5.0 52 82-137 22-73 (260)
479 cd01128 rho_factor Transcripti 90.4 1.7 3.6E-05 38.0 8.1 28 81-109 14-41 (249)
480 KOG0331 ATP-dependent RNA heli 90.3 1.6 3.4E-05 42.0 8.4 91 93-196 322-415 (519)
481 TIGR02880 cbbX_cfxQ probable R 90.3 0.48 1E-05 42.4 4.8 19 82-100 57-75 (284)
482 TIGR02788 VirB11 P-type DNA tr 90.3 0.35 7.6E-06 43.9 4.0 18 82-99 143-160 (308)
483 PRK13850 type IV secretion sys 90.1 0.58 1.3E-05 47.0 5.6 48 84-136 140-187 (670)
484 TIGR00708 cobA cob(I)alamin ad 90.0 3.1 6.7E-05 33.9 8.7 51 189-240 96-148 (173)
485 PRK06321 replicative DNA helic 90.0 3.6 7.7E-05 39.8 10.7 112 83-203 226-349 (472)
486 TIGR02655 circ_KaiC circadian 89.9 0.5 1.1E-05 45.9 5.0 59 75-137 250-313 (484)
487 COG1618 Predicted nucleotide k 89.8 0.86 1.9E-05 36.2 5.2 37 84-122 6-42 (179)
488 TIGR03880 KaiC_arch_3 KaiC dom 89.8 0.73 1.6E-05 39.6 5.4 51 83-137 16-66 (224)
489 TIGR00416 sms DNA repair prote 89.7 1.3 2.8E-05 42.5 7.5 51 83-137 94-144 (454)
490 PF08423 Rad51: Rad51; InterP 89.6 0.72 1.6E-05 40.5 5.3 50 75-124 25-82 (256)
491 PRK14701 reverse gyrase; Provi 89.6 1.7 3.7E-05 48.4 9.0 61 287-347 121-187 (1638)
492 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.5 0.5 1.1E-05 40.0 4.2 44 79-123 34-78 (205)
493 KOG2035 Replication factor C, 89.5 2.1 4.5E-05 37.4 7.6 46 189-236 126-171 (351)
494 TIGR03346 chaperone_ClpB ATP-d 89.5 1.8 4E-05 45.3 9.0 18 84-101 195-212 (852)
495 PRK04537 ATP-dependent RNA hel 89.5 2.3 4.9E-05 42.4 9.2 74 115-199 258-334 (572)
496 KOG0058 Peptide exporter, ABC 89.5 3 6.5E-05 41.5 9.7 35 188-223 620-654 (716)
497 KOG1806 DEAD box containing he 89.5 0.51 1.1E-05 48.2 4.6 68 68-136 738-805 (1320)
498 TIGR02237 recomb_radB DNA repa 89.5 0.47 1E-05 40.2 4.0 38 83-123 12-49 (209)
499 TIGR02640 gas_vesic_GvpN gas v 89.2 0.23 5E-06 43.9 1.9 26 76-101 14-39 (262)
500 PF13207 AAA_17: AAA domain; P 89.1 0.25 5.5E-06 37.6 1.9 15 86-100 2-16 (121)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-69 Score=463.40 Aligned_cols=366 Identities=36% Similarity=0.619 Sum_probs=346.3
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|.++++.|.+++++...|+..|+++|+++||.++.|+++|..|.||||||.+|++|+++++...+..+.++|++|||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 34699999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh-cCCCCCCCccEEEEcCcchhh
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~-~~~~~~~~~~~vVvDE~h~~~ 203 (423)
+||.|+.+.+..+.... ++++.++.||.+...+...+.+. |+|+|+||++|.+++. ...+.+..++++|+||||+++
T Consensus 140 ELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred HHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 99999999999998776 99999999999999998888877 6999999999999988 667889999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 283 (423)
+ .+|...+..|++.++..+|.+++|||++..+..+....+..|..+...... ...+.+.++|..++...|...+..++
T Consensus 218 d-~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 218 D-MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred h-hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHH
Confidence 9 899999999999999999999999999999999998888889888776654 45677788899999999999999999
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
+...++.+||||++...++.++-.|+..|+.+..+||.|++..|...++.|++|..+||+||+++++|+|+|.+++||+|
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
|.|.+..+|+||+||++|+|.+|.++.+++. ++.+.+..|+..+++.+.+.
T Consensus 376 DiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~~ 426 (476)
T KOG0330|consen 376 DIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPEY 426 (476)
T ss_pred CCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999986 99999999999999887653
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-66 Score=473.60 Aligned_cols=359 Identities=35% Similarity=0.599 Sum_probs=328.3
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC------CCCCeEEEE
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTALV 119 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 119 (423)
..|..+++++.+..+|+..||..|+|+|.+.||.++.|+|++..+.||||||++|++|++.++.. .+.+|.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999988775 455789999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCc
Q 014486 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 199 (423)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~ 199 (423)
++|||+||.|+.+.+.++.... .++..+++||.....+...+.++ .+|+|+||++|.++++.+...++++.++|+|||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 9999999999999999998886 68899999999999999999998 599999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccHHHHHHHhccCCceeeeccc-cccccccceEEEEEeChHHHHH
Q 014486 200 DKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKLSELEKNR 277 (423)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (423)
|+|++ .+|...++++...+ ++..|++++|||+|.++..++..++.++..+.+... .......+.+....+....|..
T Consensus 249 DrMld-mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~ 327 (519)
T KOG0331|consen 249 DRMLD-MGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR 327 (519)
T ss_pred Hhhhc-cccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH
Confidence 99999 89999999999999 556689999999999999999999999988877655 4445566677777788888988
Q ss_pred HHHHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCC
Q 014486 278 KLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (423)
Q Consensus 278 ~l~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~ 354 (423)
.+..+|... .++|+||||.++..|+.+...|+..++++..+||+.++.+|..+++.|++|+..|||||+++++|||+
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi 407 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV 407 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC
Confidence 888888776 46799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHH
Q 014486 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFM 408 (423)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
|++++||+||+|.++++|+||+||+||+|++|.++.|++.... .....+.+.+
T Consensus 408 ~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~-~~a~~l~~~l 460 (519)
T KOG0331|consen 408 PDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNA-KLARELIKVL 460 (519)
T ss_pred ccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999986433 3333333333
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-63 Score=473.29 Aligned_cols=366 Identities=40% Similarity=0.655 Sum_probs=338.6
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC--CCCCeEEEEEecC
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHT 123 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~P~ 123 (423)
..|.++++++.++++|.+.||..|+|+|..+||.++.|+|+++.++||||||++|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 56999999999999999999999999999999999999999999999999999999999999763 3222129999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
|+||.|+++.+..+....+++++..++||.+...+...+..+ ++|+|+||+++++++....+.+..++++|+||||+++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhh
Confidence 999999999999998876578999999999999999888887 7999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecccc-ccccccceEEEEEeChHH-HHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELE-KNRKLND 281 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~ 281 (423)
+ .+|...+..+...++.+.|++++|||+|..+..+...++.+|..+.+.... ......+.+.++.+...+ |...+..
T Consensus 188 d-~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 188 D-MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred c-CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 9 799999999999999999999999999999999999999999877776332 236677888888888766 9999999
Q ss_pred HHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE
Q 014486 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (423)
Q Consensus 282 ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi 361 (423)
+++.....++||||++...++.++..|...|+++..+||++++.+|.+++..|++|+.+|||||+++++|||+|++++||
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 362 ~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
+||+|.++..|+||+||+||+|..|.++.|+.+..+...+..+++.++..+.
T Consensus 347 nyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 347 NYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999986688999999999876533
No 4
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.1e-62 Score=463.42 Aligned_cols=362 Identities=33% Similarity=0.585 Sum_probs=331.3
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.+|.++++++.+.++|.+.||..|+|+|+++++.++.|+++++++|||+|||++|++|+++.+......+++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876665668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+.+.++.+....+++++..++||.+...+...+..+ ++|+|+||+++..++......+.++++||+||||.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~-~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~- 161 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD- 161 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCC-CCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC-
Confidence 9999999999988776688999999999988887777765 69999999999999998888899999999999999998
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHh
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA 285 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 285 (423)
.+|...+..+...++...|++++|||+++.+..+...++..+..+.+.... ....+.+.+..+....+...+..++..
T Consensus 162 ~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~ 239 (460)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLH 239 (460)
T ss_pred cCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999888888888777665443 234466777788888888999999988
Q ss_pred hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC
Q 014486 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 365 (423)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~ 365 (423)
..+.++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
|.++..|+||+||+||+|+.|.+++|+.+ .+...+..+++.++..+
T Consensus 320 p~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~ 365 (460)
T PRK11776 320 ARDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKL 365 (460)
T ss_pred CCCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999986 45667788888887644
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-62 Score=401.72 Aligned_cols=366 Identities=38% Similarity=0.646 Sum_probs=340.8
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|++.++++.+++.+++.||+.|..+|+.|+++++.|++++.++..|+|||.+|.+.++....-+....++||++|||
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 45799999999999999999999999999999999999999999999999999999999998888777777999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+||.|+.+.+..+.... ++++....||.+..++.+.+..|+ +++.+||++++++++...+....++++|+|||+.+++
T Consensus 106 ELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~-hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~ 183 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQ-HVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN 183 (400)
T ss_pred HHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccc-eEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH
Confidence 99999999999998876 899999999999999999998775 9999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH-HHHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLL 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll 283 (423)
.+|...+-.+++.+|+..|++++|||+|.++......|+.+|..+.+.... ...+.+.++++.+... +|...+.++.
T Consensus 184 -kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLY 261 (400)
T KOG0328|consen 184 -KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLY 261 (400)
T ss_pred -hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHh
Confidence 699999999999999999999999999999999999999999998776554 4567777787777554 4999999998
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
..+.-...+|||+++..++++.+.+++.++.+...||+|++++|..++..|+.|+.+|||+|++.++|+|+|.+++||+|
T Consensus 262 d~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNY 341 (400)
T KOG0328|consen 262 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINY 341 (400)
T ss_pred hhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEec
Confidence 88877899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
|+|.+.+.|+||+||.||.|.+|.++.|+. .++...+..+++++...+..+
T Consensus 342 DLP~nre~YIHRIGRSGRFGRkGvainFVk-~~d~~~lrdieq~yst~i~em 392 (400)
T KOG0328|consen 342 DLPNNRELYIHRIGRSGRFGRKGVAINFVK-SDDLRILRDIEQYYSTQIDEM 392 (400)
T ss_pred CCCccHHHHhhhhccccccCCcceEEEEec-HHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999997 578889999999998766543
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.2e-61 Score=453.65 Aligned_cols=363 Identities=31% Similarity=0.506 Sum_probs=319.5
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-------CCCeEE
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTA 117 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~ 117 (423)
..+|+++++++.++++|.+.||..|+|+|+++||.++.|+|+++.||||||||++|++|+++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999766422 234689
Q ss_pred EEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEc
Q 014486 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILD 197 (423)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvD 197 (423)
||++|+++||.|+++.+..+.... ++++..++||.+...+...+.++ ++|+|+||+++..++....+.+.+++++|+|
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESG-VDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 999999999999999999988776 78999999998887777777665 6999999999999998888899999999999
Q ss_pred CcchhhccCCcHHHHHHHHHhCCC--CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHH
Q 014486 198 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (423)
Q Consensus 198 E~h~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (423)
|||++.+ .+|...+..++..++. ..+.+++|||++..+.......+..+..+.+..... ....+.+.+.......+
T Consensus 165 Ead~l~~-~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 165 EADRMFD-LGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEK 242 (423)
T ss_pred cHHHHhh-cccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHH
Confidence 9999988 7899999999988874 456899999999998888877887777665543322 22334445555666778
Q ss_pred HHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC
Q 014486 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (423)
Q Consensus 276 ~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~ 355 (423)
...+..++......++||||++.+.++.+.+.|...|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 88888888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
++++||+|++|.++..|+||+||+||.|+.|.+++|+.+ .+...+..+++.++..+
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE-EYALNLPAIETYIGHSI 378 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH-HHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999986 45666788888887654
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.9e-61 Score=461.31 Aligned_cols=367 Identities=31% Similarity=0.522 Sum_probs=319.9
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-----CCCCe
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQV 115 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-----~~~~~ 115 (423)
.+....+|+++++++.++++|.++||..|+|+|.++||.++.|+++++.+|||||||++|++|++..+.. ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 3444568999999999999999999999999999999999999999999999999999999999876432 23356
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
.+|||+||++||.|+.+.++.+.... ++++..++||.....+...+.++ ++|+|+||++|.+++......+.++++||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 89999999999999999999998765 78899999999888777777776 69999999999999998888899999999
Q ss_pred EcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhcc-CCceeeeccccccccccceEEEEEeChHH
Q 014486 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSELE 274 (423)
Q Consensus 196 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (423)
+||||++++ .+|...+..++..+++..|++++|||+|..+..+.+.++. .+..+.+..........+.+.+..+....
T Consensus 283 iDEAd~mld-~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 283 LDEADRMLD-MGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred eehHHhhhh-cchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh
Confidence 999999998 7899999999999999999999999999998888887775 45555444333223344555666666777
Q ss_pred HHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCC
Q 014486 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (423)
Q Consensus 275 ~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gl 352 (423)
|...+..++... ...++||||++++.++.+++.|+..++++..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 778888888765 467999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcc
Q 014486 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLL 411 (423)
Q Consensus 353 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (423)
|+|++++||+|++|.++..|+||+||+||.|+.|.+++|+++ .+......+.+.|...
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~ 499 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREA 499 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999986 4555666666665543
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-63 Score=434.90 Aligned_cols=357 Identities=34% Similarity=0.604 Sum_probs=324.8
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCC---eEEEEEec
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ---VTALVLCH 122 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~lil~P 122 (423)
.+|.+++|+..+++++..+||..|+|+|..+||-.+.|++++.+|.||||||.+|++|+++++.-.+.+ .++||+||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 379999999999999999999999999999999999999999999999999999999999987755533 48999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcch
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~ 201 (423)
||+|+.|+++..++++... ++.++...||.+...+...+.+. |+|+|+||++|.+++.+ ..+++.++.++|+||||+
T Consensus 261 TRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred cHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 9999999999999998876 79999999999999999999888 69999999999998875 468899999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe---ChHHHHHH
Q 014486 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---SELEKNRK 278 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 278 (423)
+++ .+|...+..+...+++++|.+++||||+..+..++...+..|..+++++..... ..+.+-++.+ .+..+...
T Consensus 339 MLe-egFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a-~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLE-EGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA-PKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHH-HHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc-hhhhHHHheeccccccccHHH
Confidence 999 899999999999999999999999999999999999999999999998876544 3334444433 34557778
Q ss_pred HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCC
Q 014486 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358 (423)
Q Consensus 279 l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~ 358 (423)
+..++.......+|||+.+.+.|+.+.-.|.-.|+.+.-+||.+++.+|.+.++.|++.+++|||||+++++|+|++++.
T Consensus 417 l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 417 LASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHH
Q 014486 359 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 359 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
.||+|.+|.+...|+||+||+.|+|..|..+.|+... +..+++.|-+.
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc-cHHHHHHHHhh
Confidence 9999999999999999999999999999999999854 66666665544
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.9e-61 Score=464.39 Aligned_cols=363 Identities=36% Similarity=0.638 Sum_probs=330.2
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
+|.++++++.++++|.++||..|+|+|.++|+.++.++++++.+|||+|||++|++|+++.+......+++||++||++|
T Consensus 7 ~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreL 86 (629)
T PRK11634 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTREL 86 (629)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHH
Confidence 59999999999999999999999999999999999999999999999999999999999887766566799999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC
Q 014486 127 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (423)
Q Consensus 127 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~ 206 (423)
+.|+++.+..+....+++++..++||.+...+...+..+ ++|+|+||+++++++....+.++++++||+||||.++. .
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~-~ 164 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-M 164 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh-c
Confidence 999999999998877789999999999888877777666 69999999999999998888899999999999999988 7
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh
Q 014486 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286 (423)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 286 (423)
+|...+..++..++...|++++|||+|..+..+.+.++..+..+.+.... .....+.+.+..+....+...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHhc
Confidence 89999999999999999999999999999999888898888776655433 23345566677777778888899999888
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 366 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~ 366 (423)
...++||||+++..+..+++.|...++.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+|++|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
.++..|+||+||+||.|+.|.+++|+.+ .+...+..+++.++..+.
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~-~e~~~l~~ie~~~~~~i~ 369 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIP 369 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEech-HHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999985 456778888888776654
No 10
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.4e-61 Score=426.67 Aligned_cols=358 Identities=30% Similarity=0.517 Sum_probs=323.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC----CCCeEEEEE
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVL 120 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil 120 (423)
...|+.+.+++..++++..+||..+|++|+..++.++.|+++++.|-||+|||++|++|+++.+... ..+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3468899999999999999999999999999999999999999999999999999999999875543 244589999
Q ss_pred ecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-CCCCCccEEEEcCc
Q 014486 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDEC 199 (423)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~vVvDE~ 199 (423)
||||+||.|.+.+++++....+++.+..+.||.+...+...+.++ ++|+|+||++|.+++++.. +.+.+++++|+|||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 999999999999999999998899999999999999999999996 6999999999999888654 45677889999999
Q ss_pred chhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccC-Cceeeeccc-cccccccceEEEEEeChHHHHH
Q 014486 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDE-AKLTLHGLVQHYIKLSELEKNR 277 (423)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (423)
|++++ .+|+..+..+.+.++..+|.+++|||.++.+..+....+.. +..+.+... .......+.+.++..+...+..
T Consensus 240 DrlLd-~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 240 DRLLD-IGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred hhhhh-cccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999 99999999999999999999999999999999998887765 555555443 3345566777788888888888
Q ss_pred HHHHHHHhhcC-CcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 278 KLNDLLDALDF-NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 278 ~l~~ll~~~~~-~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
.+..+++.+.. .++||||++......+++.|....+++..+||+.++..|..+..+|++.+..||+||++++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88888888766 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHH
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVS 405 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 405 (423)
++.||+|++|.++.+|+||+||+||.|..|.++++..+ ++...+..+.
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHh
Confidence 99999999999999999999999999999999999986 5666666665
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2e-60 Score=451.63 Aligned_cols=361 Identities=33% Similarity=0.599 Sum_probs=321.1
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC------CCeEEEEE
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVL 120 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil 120 (423)
+|+++++++.+.++|.++||..|+++|.++++.++.++|+++.+|||+|||++|++|+++.+.... ..+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999998764321 23479999
Q ss_pred ecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcc
Q 014486 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (423)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h 200 (423)
+||++||.|+.+.++.+.... ++++..++|+.+...+...+... ++|+|+||++|+.++......++++++||+||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGG-VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCC-CcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 999999999999999988765 78899999999888777766655 6999999999999988888889999999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (423)
++.+ .++...+..++..++...|++++|||++..+..+...++..+..+.+.... .....+.+.+..+....+...+.
T Consensus 160 ~ll~-~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 160 RMLD-MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLS 237 (456)
T ss_pred HHhc-cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHH
Confidence 9998 788899999999999999999999999998888888888887766554332 22344555666666677777788
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEE
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~v 360 (423)
.++......++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 88777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 361 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 361 i~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
|+|++|.++.+|+||+||+||.|..|.+++|+.. .+...+..+++.++..+
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~-~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV-DEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecH-HHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999985 57778889999888665
No 12
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-60 Score=416.01 Aligned_cols=357 Identities=30% Similarity=0.531 Sum_probs=322.2
Q ss_pred CCcCCC--CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC--C---CCCeEEEE
Q 014486 47 GFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--N---PGQVTALV 119 (423)
Q Consensus 47 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~--~---~~~~~~li 119 (423)
.|++++ |++++++++...||..+||.|..+||.++.++|+++.++||||||++|++|+++.+.. . +....+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466554 5699999999999999999999999999999999999999999999999999987722 2 22347899
Q ss_pred EecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC--CCCccEEEEc
Q 014486 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS--LKNVRHFILD 197 (423)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~--~~~~~~vVvD 197 (423)
|+|||+|+.|+.+.+..|...++++++..+.||.+...+.+.+....++|+|+||++|.+++++.... +..+.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 99999999999999999998888999999999999999999998888899999999999999875544 5599999999
Q ss_pred CcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccc-cccccceEEEEEeChHHHH
Q 014486 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELEKN 276 (423)
Q Consensus 198 E~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (423)
|||++++ .+|...+..|+..+|++++.=++|||...++.++....+.+|..+.+..... ..+..+...|..+....|.
T Consensus 165 EADrLld-mgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 165 EADRLLD-MGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred chHhHhc-ccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999988766553 2445566778889999999
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~ 354 (423)
..+..++.+...+++|||+++...++.....|... +.++..+||.|.+.+|..++..|.+....+|+||+++++|+|+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 99999999988899999999999999999888765 6788899999999999999999999888999999999999999
Q ss_pred CCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHH
Q 014486 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVS 405 (423)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 405 (423)
|+++.||+||+|.++..|.||+||++|.|..|.+++|+.+ .+..+..-+.
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p-~E~aYveFl~ 373 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP-REEAYVEFLR 373 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc-cHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5555544433
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-59 Score=451.42 Aligned_cols=363 Identities=30% Similarity=0.520 Sum_probs=318.8
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-------CCCeEEE
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTAL 118 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~l 118 (423)
.+|.+|++++.++++|.+.||..|+|+|.++||.++.|+|+++.+|||||||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999876421 1246899
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEc
Q 014486 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILD 197 (423)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvD 197 (423)
||+|+++|+.|+++.+..+.... ++++..++|+.....+...+..+ ++|+|+||++|++++... .+.+..+++||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~-~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQG-VDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCC-CCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 99999999999999999998775 78999999999888777766655 699999999999988764 4678889999999
Q ss_pred CcchhhccCCcHHHHHHHHHhCCC--CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHH
Q 014486 198 ECDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (423)
Q Consensus 198 E~h~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (423)
|||.+.+ .+|...+..++..++. ..|++++|||++..+..+...++..+..+...... .....+.+.+.......+
T Consensus 167 EAh~lld-~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 167 EADRMFD-LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEK 244 (572)
T ss_pred CHHHHhh-cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHH
Confidence 9999988 7899999999988876 68999999999999888888888777665544332 233444555666667778
Q ss_pred HHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC
Q 014486 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (423)
Q Consensus 276 ~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~ 355 (423)
...+..++......++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 88888888877788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
++++||+|+.|.++..|+||+||+||.|..|.+++|+++. +...+..++++++..+.
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPDIEAYIEQKIP 381 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999864 55668888888876653
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-61 Score=401.83 Aligned_cols=365 Identities=38% Similarity=0.635 Sum_probs=344.6
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.+...|++|.+.++++..+.++||+.|.|+|.++||..+.|++++..+..|+|||.+|++|+++.........+++|++|
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVP 161 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVP 161 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
+++||.|....++++.+.. ++++.+.+||++...+.-.+... .+++|+||++++++..++--.+++...+|+||||.+
T Consensus 162 trelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~-VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 162 TRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQT-VHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred cchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCc-eEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 9999999999999999887 79999999999988887777666 699999999999999999889999999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHH
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 282 (423)
++ ..|...+..+...+|+.+|++++|||+|-.+..+...++.+|.++.+-.+ .....+.++|..+.+..|..-+..+
T Consensus 240 Ls-~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 240 LS-VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred hc-hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHH
Confidence 98 89999999999999999999999999999999999999999998887655 5667888999999999999999999
Q ss_pred HHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE
Q 014486 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (423)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~ 362 (423)
...+.-+..||||++.+.++.+++.+.+.|+.+..+|+.|.+..|.+++..|++|.++.||||+.+.+|+|++.+++||+
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
||.|++.++|.||+||.||.|..|.++.+++ .++...+..|++.+|..+.
T Consensus 397 FDfpk~aEtYLHRIGRsGRFGhlGlAInLit-yedrf~L~~IE~eLGtEI~ 446 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFGHLGLAINLIT-YEDRFNLYRIEQELGTEIK 446 (459)
T ss_pred cCCCCCHHHHHHHccCCccCCCcceEEEEEe-hhhhhhHHHHHHHhccccc
Confidence 9999999999999999999999999999998 4677889999999997764
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=9e-59 Score=440.01 Aligned_cols=361 Identities=34% Similarity=0.581 Sum_probs=316.2
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC----CCCCeEEEEEec
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVLCH 122 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~lil~P 122 (423)
+|+++++++.+++.|.++||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.. ..+.+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 5899999999999999999999999999999999999999999999999999999999987542 223458999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
+++|+.|+.+.+..+.... ++++..++|+.....+...+..+ ++|+|+||++|+.++....+.+.++++||+||||++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 82 TRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSEN-QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred cHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999999998776 78999999999888777666655 699999999999999988888999999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCc-cHHHHHHHhccCCceeeeccccccccccceEEEEEeC-hHHHHHHHH
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 280 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (423)
.+ .+|...+..+...++...|++++|||++. .+..+...++..+..+....... ....+.+.+.... ...+...+.
T Consensus 160 l~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 160 LD-MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred hC-CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHH
Confidence 98 78999999999999989999999999985 46667777777777665544322 2333444444444 356777788
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEE
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~v 360 (423)
.++......++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++|
T Consensus 238 ~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~V 317 (434)
T PRK11192 238 HLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHV 317 (434)
T ss_pred HHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEE
Confidence 88877677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 361 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 361 i~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
|+|++|.+...|+||+||+||+|..|.+++++.. .+...+..+++++...+
T Consensus 318 I~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 318 INFDMPRSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEEPL 368 (434)
T ss_pred EEECCCCCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999974 56677888888777554
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.1e-59 Score=445.54 Aligned_cols=364 Identities=32% Similarity=0.500 Sum_probs=313.1
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-------CCC
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPG 113 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-------~~~ 113 (423)
.+....+|+++++++.++++|.+.||..|+|+|.++|+.++.|+++++.+|||||||++|++|++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 3345567999999999999999999999999999999999999999999999999999999999976431 224
Q ss_pred CeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014486 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 193 (423)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~ 193 (423)
++++||++||++||.|+.+.++.+.... ++++..+.||.....+...+..+ ++|+|+||++|..++......+.++++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeE
Confidence 5699999999999999999999887665 67888888988877777777666 699999999999999888888999999
Q ss_pred EEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH
Q 014486 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL 273 (423)
Q Consensus 194 vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (423)
||+||||++.+ .+|...+..+...++ ..|++++|||+++.+..+...+...+..+....... ....+.+....+...
T Consensus 274 lViDEad~ml~-~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~ 350 (518)
T PLN00206 274 LVLDEVDCMLE-RGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETK 350 (518)
T ss_pred EEeecHHHHhh-cchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccch
Confidence 99999999998 789999988888875 679999999999999888888887777666544332 223344555556666
Q ss_pred HHHHHHHHHHHhhc--CCcEEEEEcChhhHHHHHHHHHh-CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCcccc
Q 014486 274 EKNRKLNDLLDALD--FNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350 (423)
Q Consensus 274 ~~~~~l~~ll~~~~--~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~ 350 (423)
.+...+.+++.... ..++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++
T Consensus 351 ~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 351 QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 67777777776543 35899999999999999999975 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
|+|+|++++||+|++|.++.+|+||+||+||.|..|.+++|+++ ++...+..+.+.|..
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKS 489 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 455566666666653
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-58 Score=442.28 Aligned_cols=363 Identities=31% Similarity=0.584 Sum_probs=320.6
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-------CCeEEE
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTAL 118 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~l 118 (423)
..|.++++++.+.++|.+.||..|+++|.++++.++.|+|+++.+|||||||++|++|++..+...+ +.+++|
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 4688999999999999999999999999999999999999999999999999999999998765432 245899
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcC
Q 014486 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 198 (423)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE 198 (423)
||+||++|+.|+.+.++.+.... ++++..++||.+...+...+....++|+|+||++|+.+.......+.++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999999987765 78999999998887777777666679999999999998888888899999999999
Q ss_pred cchhhccCCcHHHHHHHHHhCCC--CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHH
Q 014486 199 CDKMLESLDMRRDVQEIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276 (423)
Q Consensus 199 ~h~~~~~~~~~~~~~~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (423)
+|.+.+ .++...+..+...++. ..|++++|||++.......+.+...+..+.+..... ......+.+......++.
T Consensus 246 ah~l~~-~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 246 ADRMLD-MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred HHHHHh-cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHH
Confidence 999988 7888888888888764 579999999999998888888888776665543322 223344555666667777
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
..+..++......++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|++++||||+++++|+|+++
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 88888888777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
+++||++++|.++..|+||+||+||.|+.|.+++|+++. +...+..+++.++..+
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPEIEELLGRKI 458 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999854 6667888998888665
No 18
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.3e-59 Score=413.15 Aligned_cols=358 Identities=34% Similarity=0.555 Sum_probs=328.1
Q ss_pred cCCcccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC------
Q 014486 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------ 110 (423)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------ 110 (423)
+.+..+-+..+|++.+++..+++.+...||..|+|+|+.++|..++++|+|..+.||||||.+|++|++..+..
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 44455556678999999999999999999999999999999999999999999999999999999999865432
Q ss_pred ---CCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC
Q 014486 111 ---NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS 187 (423)
Q Consensus 111 ---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~ 187 (423)
.-.+|.++++.||++|++|+.++-.+|...+ ++++..+.||.+.+++--.+..++ +|+|+||+.|.+.+.+..+-
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fqls~gc-eiviatPgrLid~Lenr~lv 393 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQLSMGC-EIVIATPGRLIDSLENRYLV 393 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhhhccc-eeeecCchHHHHHHHHHHHH
Confidence 2245689999999999999999999999887 799999999999998877888885 99999999999999999999
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC-------------------------ceEEEEeccCCccHHHHHHH
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-------------------------KQVMMFSATLSKEIRPVCKK 242 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~v~~SAT~~~~~~~~~~~ 242 (423)
++++.+||+|||+++.+ .+|...+..++..++.. .|.+++|||+|+.+..+++.
T Consensus 394 l~qctyvvldeadrmiD-mgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 394 LNQCTYVVLDEADRMID-MGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred hccCceEeccchhhhhc-ccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 99999999999999998 89999999998877641 48999999999999999999
Q ss_pred hccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
++..|..+++..... ..+.+.+.....+...+...|.+++++....++|||+|+.+.++.+++.|.+.|+.+..|||+-
T Consensus 473 ylr~pv~vtig~~gk-~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k 551 (673)
T KOG0333|consen 473 YLRRPVVVTIGSAGK-PTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGK 551 (673)
T ss_pred HhhCCeEEEeccCCC-CccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCc
Confidence 999999888776654 4466778888888999999999999999889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccH
Q 014486 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 323 ~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
++++|+.++..|++|..+|||||+++++|||+|++.+||+|++++++.+|.||+||+||+|+.|.++.|+++.+..
T Consensus 552 ~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 552 SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986655
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-59 Score=394.46 Aligned_cols=367 Identities=32% Similarity=0.524 Sum_probs=328.5
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
...|..+++++++.+.|.++|+..|+|+|..+||.++.|+|+|-+|.||||||.+|.+|+++++...+.+.-++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC----CCCCCccEEEEcCcc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECD 200 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~----~~~~~~~~vVvDE~h 200 (423)
+||.|+.+.|....... ++++.+++||.+.-.+...+... |+++|+||+++..++.... +.+.+++++|+|||+
T Consensus 86 ELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~r-PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDR-PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccC-CCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 99999999998887665 89999999999888777777666 6999999999999887652 447889999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeec-cccccccccceEEEEEeChHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD-DEAKLTLHGLVQHYIKLSELEKNRKL 279 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (423)
++++ ..|...+..+...+|..+|.+++|||+...+......-...+..+... ..+......+.+.|+.++...+...+
T Consensus 164 rvL~-~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 164 RVLA-GCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhc-cchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 9998 799999999999999999999999999988766544333332222222 23445566777888999999998888
Q ss_pred HHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 280 NDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 280 ~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
..++... +.+.++||+++..+++.++..|+..++.+..+||.|++.+|...+.+|+.+..+|||||+++++|+|+|.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 8888654 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
+..||+++.|.+|.+|+||+||+.|+|..|.++.|+. ..+.+.+..|++..|..++..
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt-~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT-QRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec-hhhHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999 678889999999999888754
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-59 Score=413.74 Aligned_cols=358 Identities=28% Similarity=0.512 Sum_probs=331.3
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC----CCCeEEEEEe
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLC 121 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~ 121 (423)
..|.+|+++....+.|.+.+|..|+.+|+++||..++|++++-++.||||||++|++|+++.+... ..+..||||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 469999999999999999999999999999999999999999999999999999999999876432 2455799999
Q ss_pred cChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCcc
Q 014486 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECD 200 (423)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvDE~h 200 (423)
|||+||.|+++.+.+.+... ++..+.+.||.+...+...+.. .+|+||||++|+.++... .+.-.++.++|+|||+
T Consensus 149 PTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred chHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 99999999999999998886 8999999999998877776655 499999999999988654 5677899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecccc-ccccccceEEEEEeChHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELEKNRKL 279 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 279 (423)
++++ ++|...+..|...+|+.+|.+++|||.+..+.++++..+.+|..+.+.... ...+..+.+.|+.++..+|+..|
T Consensus 226 R~LD-MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 226 RMLD-MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHH-HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 9999 999999999999999999999999999999999999999999998877444 56667788899999999999999
Q ss_pred HHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 280 ~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
..+++.+...++|||+.+.+++..++..+.+. |++...+||.|++..|..++..|...+.-||+||+++++|+|+|.+
T Consensus 305 ~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 305 WSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 99999999999999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHH
Q 014486 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
+.||++|+|.++.+|+||+||+.|.+..|.++++..+.++..++..|++.
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998888888888876
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.5e-57 Score=425.21 Aligned_cols=366 Identities=38% Similarity=0.649 Sum_probs=317.2
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|+++++++.+.++|.+.||..|+|+|.++++.++.++++++.+|||+|||++|+++++..+.....+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 46799999999999999999999999999999999999999999999999999999999998876555556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+.+.+..+.... .+.+....|+.....+...+..+ ++|+|+||+++...+......+.++++||+||+|.+.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 99999999998887654 67788888888877777666666 59999999999998888888899999999999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh-HHHHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLL 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll 283 (423)
.++...+..++..+++..|++++|||+|+........++..+..+...... .....+...+..... ..+...+..++
T Consensus 185 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 262 (401)
T PTZ00424 185 -RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLY 262 (401)
T ss_pred -cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHH
Confidence 678888888999999999999999999998888877777777655443322 223334444444433 33556667777
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
......++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~ 342 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINY 342 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEE
Confidence 76677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
++|.+...|.||+||+||.|+.|.++.++++ .+...+..+++.+...++..
T Consensus 343 ~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 343 DLPASPENYIHRIGRSGRFGRKGVAINFVTP-DDIEQLKEIERHYNTQIEEM 393 (401)
T ss_pred CCCCCHHHEeecccccccCCCCceEEEEEcH-HHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999999975 56778888898888776653
No 22
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-60 Score=381.30 Aligned_cols=371 Identities=75% Similarity=1.180 Sum_probs=345.0
Q ss_pred hhhhccccccccccCCCc-cccccccccccCCcccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceE
Q 014486 9 YEDELLDYEEEDAQAPDS-VATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVI 87 (423)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~i 87 (423)
.++|+.|+++++++..+. ++.+...+..+..+.+++++.|++|.+.|++++++.+.||++|...|.++||...-|-+++
T Consensus 4 ~e~dlldyeeeee~~~~~~~~~~~~~~d~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvl 83 (387)
T KOG0329|consen 4 VEEDLLDYEEEEEEQADQESAPAGPKKDKKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 83 (387)
T ss_pred hhhhhhcccccccccCCccCCCCCccccccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhh
Confidence 567788887777665553 4444555567778999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCC
Q 014486 88 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP 167 (423)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (423)
+.|..|.|||.+|+++.++++.+..+...+|++|.||+||-|+..++.+|.++.|++++.+++||.++......+.+ +|
T Consensus 84 cqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~P 162 (387)
T KOG0329|consen 84 CQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CP 162 (387)
T ss_pred eecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 68
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCC
Q 014486 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDP 247 (423)
Q Consensus 168 ~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~ 247 (423)
+|+|+||++++.+.++..+++++++..|+|||+.++++.+.++.++.+++..|...|++.+|||++++++..++.++.+|
T Consensus 163 hivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdP 242 (387)
T KOG0329|consen 163 HIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDP 242 (387)
T ss_pred eEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCc
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred ceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHH
Q 014486 248 MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEER 327 (423)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 327 (423)
.+++++.+.+.....+.++|+...+.+|+..+.+++..+..+.++||+.+... | +
T Consensus 243 mEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~---- 297 (387)
T KOG0329|consen 243 MEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S---- 297 (387)
T ss_pred hhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----
Confidence 99999999999999999999999999999999999999999999999988765 0 0
Q ss_pred HHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHH
Q 014486 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 328 ~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
| ..+ +|+|+..++|+|+.+++.+++||.|.+..+|.||+|||||.|.+|.++.|++...+..+++.++..
T Consensus 298 ------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdR 367 (387)
T KOG0329|consen 298 ------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDR 367 (387)
T ss_pred ------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHh
Confidence 2 123 899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhcchhhh
Q 014486 408 MFLLIGSF 415 (423)
Q Consensus 408 ~~~~~~~~ 415 (423)
+...+..+
T Consensus 368 f~v~i~eL 375 (387)
T KOG0329|consen 368 FEVNIKEL 375 (387)
T ss_pred hhccHhhc
Confidence 88877654
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-57 Score=392.16 Aligned_cols=368 Identities=30% Similarity=0.507 Sum_probs=329.6
Q ss_pred ccccCCCCc-CCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC------CCC
Q 014486 41 VGIHSSGFR-DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPG 113 (423)
Q Consensus 41 ~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~ 113 (423)
.+.+.++|+ .|...+++.+++.+.||..|+|+|.++||.+++|++++..+.||+|||++|++|.+.++.. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 455566775 4667799999999999999999999999999999999999999999999999998866543 335
Q ss_pred CeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014486 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 193 (423)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~ 193 (423)
++.+|+++||++|+.|+.-++.++.. .+.+..+++||.+..++...+..+ .+|+++||++|.++.-.+..++..+.+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTY 370 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITY 370 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEE
Confidence 56899999999999999988887753 388999999999999999999888 699999999999999999999999999
Q ss_pred EEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH
Q 014486 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL 273 (423)
Q Consensus 194 vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (423)
+|+|||+++++ ++|.+.+++++-..++++|+++.|||+|..+..++..++..|..+++..........+.+.++...+.
T Consensus 371 lVlDEADrMLD-MgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~ 449 (629)
T KOG0336|consen 371 LVLDEADRMLD-MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS 449 (629)
T ss_pred EEecchhhhhc-ccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccH
Confidence 99999999999 99999999999999999999999999999999999999999999988877766666677777777778
Q ss_pred HHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCC
Q 014486 274 EKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (423)
Q Consensus 274 ~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gl 352 (423)
++...+..++++. ...|+||||..+..|+.+...|.-.|+....+||+-.+.+|+..+..|+.|+++|||+|+.+++|+
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 8888888888776 457999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 353 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 353 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
|+++++||++||.|.+++.|+||+||+||+|.+|..+.|+. ..+-.+...|-+.|..+-+
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt-~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT-RNDWSMAEELIQILERAEQ 589 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEe-hhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999987 4555666666666654433
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-57 Score=406.78 Aligned_cols=365 Identities=34% Similarity=0.556 Sum_probs=324.5
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--------
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------- 112 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-------- 112 (423)
.+.+...|.+-.+.+.+..+++..++..|+|+|+.+||.+..|++++++|+||||||.+|++|++..+...+
T Consensus 69 ~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~ 148 (482)
T KOG0335|consen 69 VPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESG 148 (482)
T ss_pred cCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccC
Confidence 334444788778888999999999999999999999999999999999999999999999999998765432
Q ss_pred --CCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCC
Q 014486 113 --GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN 190 (423)
Q Consensus 113 --~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~ 190 (423)
..|.++|++||++|+.|++++.+++.... .+++..++||.+...+...+..++ +|+|+||++|.++++...+.+.+
T Consensus 149 ~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gc-dIlvaTpGrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 149 GGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGC-DILVATPGRLKDLIERGKISLDN 226 (482)
T ss_pred CCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCc-cEEEecCchhhhhhhcceeehhh
Confidence 35799999999999999999999997665 889999999999999999898885 99999999999999999999999
Q ss_pred ccEEEEcCcchhhccCCcHHHHHHHHHhCCC----CceEEEEeccCCccHHHHHHHhccC-CceeeeccccccccccceE
Q 014486 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPH----DKQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAKLTLHGLVQ 265 (423)
Q Consensus 191 ~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~----~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (423)
++++|+|||+++++..+|.+.++.+...... ..|.+++|||.|..+...+..++.+ ...+.+.. .......+.+
T Consensus 227 ~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r-vg~~~~ni~q 305 (482)
T KOG0335|consen 227 CKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR-VGSTSENITQ 305 (482)
T ss_pred CcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee-ecccccccee
Confidence 9999999999999988999999999987754 6899999999999999887777776 33333333 3345577788
Q ss_pred EEEEeChHHHHHHHHHHHHhhc----CC-----cEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhc
Q 014486 266 HYIKLSELEKNRKLNDLLDALD----FN-----QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE 336 (423)
Q Consensus 266 ~~~~~~~~~~~~~l~~ll~~~~----~~-----~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 336 (423)
....+.+..|...+.+++.... .+ +++|||.+++.+..+...|...++++..+||.-++.+|.+.++.|+.
T Consensus 306 ~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 306 KILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred EeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 8888999999999999987554 23 79999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 337 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 337 ~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
|+..+||||+++++|+|+|+|+|||+||+|.+..+|+||+||+||.|+.|.++.|++ .......+.|.+.|.
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILT 457 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 556666666666665
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=398.39 Aligned_cols=366 Identities=29% Similarity=0.489 Sum_probs=312.4
Q ss_pred cccCCCCcCCCCCHHHHHHHHhC-CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC------CCCC
Q 014486 42 GIHSSGFRDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQ 114 (423)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~~ 114 (423)
++.+..|..+++++.+.+.|+.. ++..||.+|+++||.++.|+|++|.++||||||++|++|+++.+.. ...+
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 34567899999999999999974 9999999999999999999999999999999999999999986532 3355
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccE
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRH 193 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~ 193 (423)
+-+||++|||+||.|+++.++++.+.+.-+-.+++.||.....+...+.+|+ +|+|+||++|++++.+. .+.++.+++
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGi-NILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGI-NILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCc-eEEEcCchHHHHHHhccchheeeeeeE
Confidence 6899999999999999999999987776677788999999998999999995 99999999999988764 577899999
Q ss_pred EEEcCcchhhccCCcHHHHHHHHHhCC-------------CCceEEEEeccCCccHHHHHHHhccCCceeeecccc----
Q 014486 194 FILDECDKMLESLDMRRDVQEIFKMTP-------------HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---- 256 (423)
Q Consensus 194 vVvDE~h~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---- 256 (423)
||+||+|++++ .+|...+..|++.+. +..|.+++|||+...+..+....+.+|..+..+...
T Consensus 291 lVlDEaDrlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~ 369 (708)
T KOG0348|consen 291 LVLDEADRLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN 369 (708)
T ss_pred EEecchhHHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC
Confidence 99999999999 899999988887662 235789999999999999998888888877622110
Q ss_pred --------------------ccccccceEEEEEeChHHHHHHHHHHHHhh----cCCcEEEEEcChhhHHHHHHHHHhC-
Q 014486 257 --------------------KLTLHGLVQHYIKLSELEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAELNKLLVEC- 311 (423)
Q Consensus 257 --------------------~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~ivf~~~~~~~~~l~~~L~~~- 311 (423)
...++.+.+++..++..-+...+..+|.+. ...++|||+.+.+.++.-+..|...
T Consensus 370 p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 370 PKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred cchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 122334556677777776666666665443 5578999999999998888877551
Q ss_pred ---------------------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcc
Q 014486 312 ---------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSAD 370 (423)
Q Consensus 312 ---------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~ 370 (423)
+.+...+||+|++.+|..++..|...+..||+||+++++|+|+|++++||.|++|.++.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 34677899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 371 TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 371 ~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
+|+||+||+.|+|.+|.+++|..|.+.. +++.++++-.+
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eae-y~~~l~~~~~~ 568 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAE-YVNYLKKHHIM 568 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHH-HHHHHHhhcch
Confidence 9999999999999999999999986555 88888877654
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-56 Score=387.03 Aligned_cols=361 Identities=30% Similarity=0.473 Sum_probs=319.9
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC------CCCCeEEEE
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTALV 119 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 119 (423)
.+|++|++++++++++.+.|+..|+-+|..+||.++.|+|++..|.||||||.+|++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 47999999999999999999999999999999999999999999999999999999999986543 345578999
Q ss_pred EecChHHHHHHHHHHHHHhccCC-CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-CCCCCccEEEEc
Q 014486 120 LCHTRELAYQICHEFERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILD 197 (423)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~vVvD 197 (423)
++||++||+|++..+.++..+++ .+++..+....+.......+ .+.|+|+|+||.+++.++..+. ..+..+.++|+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999998877664 56666666555555444334 3447999999999999988776 667889999999
Q ss_pred CcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHH
Q 014486 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 277 (423)
Q Consensus 198 E~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (423)
|||.++. .++...+.++...+|+..|.++||||+..++..+-+.++.+|..+.+..........+.++.+.+.+.+|..
T Consensus 178 EADLlls-fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 178 EADLLLS-FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred hhhhhhh-cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999998 999999999999999999999999999999999999999999998888777777788889999999999988
Q ss_pred HHHHHHHh-hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC----------
Q 014486 278 KLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD---------- 346 (423)
Q Consensus 278 ~l~~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~---------- 346 (423)
.+..+++- +-.++.|||+|+++.+..+.-.|...|++.++++|.++...|.-++.+|+.|-.+++|||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 88888764 3568999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------ccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHH
Q 014486 347 -------------------------LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 401 (423)
Q Consensus 347 -------------------------~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~ 401 (423)
-.++|||+.++.+|++||+|.++..|+||+||++|++++|.++.|+.+.++.. .
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g-~ 415 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFG-K 415 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhh-h
Confidence 24689999999999999999999999999999999999999999999866553 2
Q ss_pred HHHHHHHh
Q 014486 402 NQVSKFMF 409 (423)
Q Consensus 402 ~~~~~~~~ 409 (423)
..+++.+.
T Consensus 416 ~~le~~~~ 423 (569)
T KOG0346|consen 416 ESLESILK 423 (569)
T ss_pred hHHHHHHh
Confidence 45554443
No 27
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-55 Score=374.56 Aligned_cols=361 Identities=32% Similarity=0.563 Sum_probs=322.3
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.+|+++.|+|++++.|+.++|..|+.+|..++|.++.. ++.|.++..|+|||.+|.+.++.+....-..|.++.|+|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 47999999999999999999999999999999999985 7799999999999999999999999988888899999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcchh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~~ 202 (423)
++||.|+.+.+.+++++. +++..+..-+.....-. .+ ..+|+++||+.+.++... ....+..++++|+|||+.+
T Consensus 170 rELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG~-~i---~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRGN-KL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred HHHHHHHHHHHHHhcCce-eeeEEEEecCcccccCC-cc---hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh
Confidence 999999999999998887 77777666554211111 11 138999999999998776 6678899999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC-hHHHHHHHHH
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLND 281 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 281 (423)
.+..+|...-.++...+++..|++++|||....+..++.....++..+.+..+. .....+.+.++.+. ..+|...+.+
T Consensus 245 i~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHH
Confidence 998889999999999999999999999999999999999999988877776654 34556666666665 4567788888
Q ss_pred HHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE
Q 014486 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (423)
Q Consensus 282 ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi 361 (423)
+.....-+..||||.++..|.+++..+...|..+..+||++...+|..+++.|+.|..+|||+|++++||+|++.++.||
T Consensus 324 lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 324 LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV 403 (477)
T ss_pred HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE
Confidence 77766778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------CcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 362 NYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 362 ~~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
+||+|- +++.|+||+||+||.|++|.++.+++..+...+++.|+++++..+
T Consensus 404 NydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i 460 (477)
T KOG0332|consen 404 NYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKI 460 (477)
T ss_pred ecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcc
Confidence 999996 788999999999999999999999999999999999999998654
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-55 Score=392.37 Aligned_cols=362 Identities=31% Similarity=0.535 Sum_probs=296.1
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCC---------
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP--------- 112 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--------- 112 (423)
.+.+-|..|+++..++.+|..+||..|+++|...+|....| .|++-.|.||||||++|-+|+++.+...+
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34456999999999999999999999999999999999998 78999999999999999999999554322
Q ss_pred --CCeE--EEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--
Q 014486 113 --GQVT--ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-- 186 (423)
Q Consensus 113 --~~~~--~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-- 186 (423)
.+++ +||++|||+||.|+.+-+...... +++++..++||.....+.+.+.. +|+|+|+||++|+.++.....
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhh
Confidence 2234 999999999999999999888776 59999999999999998888877 589999999999999987654
Q ss_pred -CCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC-----CCceEEEEeccCCccH---------------------HHH
Q 014486 187 -SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-----HDKQVMMFSATLSKEI---------------------RPV 239 (423)
Q Consensus 187 -~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~SAT~~~~~---------------------~~~ 239 (423)
.+.+++++|+||+|++.+ .+.-..+..+++.+. ...|.+.+|||+.-.. ..+
T Consensus 336 ~~~k~vkcLVlDEaDRmve-kghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVE-KGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhceEEEEccHHHHhh-hccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 578899999999999998 566677777776665 3679999999984221 112
Q ss_pred HHH--hccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEE
Q 014486 240 CKK--FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (423)
Q Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (423)
++. +...|..+...... .....+....+.++..+|...+..++..++ +++|||||+++.+.++.-.|...+++...
T Consensus 415 mk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 221 22233333322221 122223333444555555555555665555 78999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 318 ~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+|+.|.+.+|...+++|++....|||||++++||+|+|++.|||||-.|++..-|+||.||+.|++..|..++++.|.+
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e- 571 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE- 571 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHhc
Q 014486 398 SDILNQVSKFMFL 410 (423)
Q Consensus 398 ~~~~~~~~~~~~~ 410 (423)
..-+..|.+-|+.
T Consensus 572 ~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 572 VGPLKKLCKTLKK 584 (731)
T ss_pred hHHHHHHHHHHhh
Confidence 5555555555553
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=377.82 Aligned_cols=361 Identities=30% Similarity=0.550 Sum_probs=319.2
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccC--------CCCCCeE
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--------PNPGQVT 116 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~--------~~~~~~~ 116 (423)
..+|.+.-++..+++.|++.|+.+|+|+|.+.+|-+++|++.|-.+-||||||++|.+|++.... ..+.+|-
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 35788899999999999999999999999999999999999999999999999999998875321 2345668
Q ss_pred EEEEecChHHHHHHHHHHHHHhcc-----CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 117 ALVLCHTRELAYQICHEFERFSTY-----LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 117 ~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.||+||+|+||.|.++.+..+... +|.++.....||....++.+....+ .+|+|+||++|.+++......+.-+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~C 327 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDAC 327 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHH
Confidence 999999999999999999887543 3678888999999999999999998 5999999999999999999999999
Q ss_pred cEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC
Q 014486 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 271 (423)
Q Consensus 192 ~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (423)
+++.+|||+++.+ .+|...++.++..+...+|.+++|||+|..+..+++..+-.|..+.+..-...... +.+....+.
T Consensus 328 RyL~lDEADRmiD-mGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsld-ViQevEyVk 405 (610)
T KOG0341|consen 328 RYLTLDEADRMID-MGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLD-VIQEVEYVK 405 (610)
T ss_pred HHhhhhhHHHHhh-ccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchh-HHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999998887665554432 222223344
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccC
Q 014486 272 ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (423)
Q Consensus 272 ~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~G 351 (423)
...|...+.+.|.... .+++|||.....++.++++|--.|..++.+||+-.+.+|...+..|+.|+-+|||+|++++.|
T Consensus 406 qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred hhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 4555555665555443 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
+|+|++.|||+||.|..+..|+||+||+||.|++|.+..|++...+...+..+...+.
T Consensus 485 LDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~ 542 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQ 542 (610)
T ss_pred CCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888877777766554
No 30
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-52 Score=366.49 Aligned_cols=350 Identities=33% Similarity=0.506 Sum_probs=315.3
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-----CCCCeEEEE
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQVTALV 119 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-----~~~~~~~li 119 (423)
.++|+.++++..+..++.+..|.+|+|+|.+++|..+.|++++-.|.||||||.+|+.|++.+... .+.+|..||
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vi 301 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVI 301 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEE
Confidence 357999999999999999999999999999999999999999999999999999999999876543 245679999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCc
Q 014486 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 199 (423)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~ 199 (423)
++||++||.|+..++++|++.+ ++++..++||.+.-++.+.+..+ +.|+||||++|.+++.-...++.++.++|+||+
T Consensus 302 lvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa 379 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA 379 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEech
Confidence 9999999999999999998888 99999999999999999999966 699999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe-ChHHHHHH
Q 014486 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRK 278 (423)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 278 (423)
+++.+ .+|...++.|....++.+|.+++|||++..+..+++.++..|+.++........ ..+.+....+ .+..|...
T Consensus 380 drmfd-mGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean-~dITQ~V~V~~s~~~Kl~w 457 (731)
T KOG0339|consen 380 DRMFD-MGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN-EDITQTVSVCPSEEKKLNW 457 (731)
T ss_pred hhhhc-cccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc-cchhheeeeccCcHHHHHH
Confidence 99999 899999999999999999999999999999999999999999998876554433 3444444433 34444433
Q ss_pred -HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 279 -LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 279 -l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
+..|......+++|+|+.....++.++..|+-.++.+..+||++.+.+|.+++..|+.+...||++|+++++|+|++.+
T Consensus 458 l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 458 LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 3444455566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccH
Q 014486 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
+.||+||...++..+.||+||+||+|.+|.++.+++..+..
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ceeecccccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999999999999999976554
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-52 Score=360.93 Aligned_cols=363 Identities=41% Similarity=0.675 Sum_probs=335.9
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
+|++++|++++++.++..||+.|+.+|+.||..+..|.++++.+++|+|||.++.+++++.....-....++++.|+++|
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreL 106 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTREL 106 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998777666789999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC
Q 014486 127 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (423)
Q Consensus 127 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~ 206 (423)
+.|.......++... +.++....||.+...+...+....+.|+++||+++...++...+....+++.|+||++.++. .
T Consensus 107 a~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs-~ 184 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS-R 184 (397)
T ss_pred HHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-c
Confidence 999998888887765 88898889999888777666665579999999999999998888888899999999999998 8
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh
Q 014486 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286 (423)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 286 (423)
+|...+..++..+++..|++++|||+|.++....+.++..|..+.+.... ...+.+.+.+..+...+|...+.++.+
T Consensus 185 gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~-- 261 (397)
T KOG0327|consen 185 GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR-- 261 (397)
T ss_pred chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH--
Confidence 99999999999999999999999999999999999999999998887665 457888888888888889999999988
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP 366 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~ 366 (423)
.-...+|||+++..+..+...|...++.+..+|+.+.+.+|..+++.|+.|..+|||+|+.+++|+|+..+..||+|+.|
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccc
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
.....|+||+||+||.|.+|.++.++. ..+...++.++++++..+...
T Consensus 342 ~~~~~yihR~gr~gr~grkg~~in~v~-~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKGVAINFVT-EEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred cchhhhhhhcccccccCCCceeeeeeh-HhhHHHHHhHHHhcCCcceec
Confidence 999999999999999999999999997 467778899999998776543
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.8e-51 Score=404.17 Aligned_cols=349 Identities=17% Similarity=0.261 Sum_probs=270.5
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (423)
+++.+.++|.+.||..|+++|.++++.++.|+|+++.+|||||||++|++|+++.+...+ ++++||++|+++|+.|+..
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999886543 4599999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHH-hcC---CCCCCCccEEEEcCcchhhccCCc
Q 014486 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDK---DLSLKNVRHFILDECDKMLESLDM 208 (423)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~-~~~---~~~~~~~~~vVvDE~h~~~~~~~~ 208 (423)
.++++. ..++++..+.|+...... ..+... ++|+|+||+++...+ ... ...+.++++||+||+|.+.+ .|
T Consensus 100 ~l~~l~--~~~i~v~~~~Gdt~~~~r-~~i~~~-~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g--~f 173 (742)
T TIGR03817 100 AVRELT--LRGVRPATYDGDTPTEER-RWAREH-ARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG--VF 173 (742)
T ss_pred HHHHhc--cCCeEEEEEeCCCCHHHH-HHHhcC-CCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC--cc
Confidence 999986 237888888888775433 344444 699999999987522 211 12368899999999999865 34
Q ss_pred HHH-------HHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe-----------
Q 014486 209 RRD-------VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL----------- 270 (423)
Q Consensus 209 ~~~-------~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 270 (423)
... +.++....+..+|++++|||+++... ....++..+..+. ....... ......+...
T Consensus 174 g~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 250 (742)
T TIGR03817 174 GSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPR-GARTVALWEPPLTELTGENGA 250 (742)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCc-CceEEEEecCCcccccccccc
Confidence 433 33333445667899999999998754 5566666554432 2211111 1011111100
Q ss_pred -----ChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC--------CCCeEEEcCCCCHHHHHHHHHhhhcC
Q 014486 271 -----SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEG 337 (423)
Q Consensus 271 -----~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~ 337 (423)
....+...+..+++. +.++||||++++.++.++..|++. +.++..+||++++.+|.++++.|++|
T Consensus 251 ~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G 328 (742)
T TIGR03817 251 PVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG 328 (742)
T ss_pred ccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC
Confidence 112344555556553 579999999999999999988763 56778899999999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCc-ccHHHHHHHHHHHhcchh
Q 014486 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 338 ~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 413 (423)
++++||||+++++|||++++++||+++.|.++..|.||+||+||.|+.|.++++.... .+...+..+++.++..++
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999888643 344455556666665443
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-52 Score=366.15 Aligned_cols=359 Identities=26% Similarity=0.389 Sum_probs=290.6
Q ss_pred CCcCCCCCHHH----------HHHHHhCCCCCCChhhhhccccccc---------CCceEEEccCCCcchhHHHHHHhhc
Q 014486 47 GFRDFLLKPEL----------LRAIVDSGFEHPSEVQHECIPQAIL---------GMDVICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 47 ~~~~~~l~~~~----------~~~l~~~~~~~~~~~Q~~~i~~~~~---------~~~~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
.|..++.+... .+++.++++.+..|+|..++|+++. .+|++|.||||||||++|.+||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 35566665543 3458899999999999999999864 4789999999999999999999998
Q ss_pred cCCCC-CCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCC----cEEEechHHHHHHHh
Q 014486 108 TEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP----QIVVGTPGRILALAR 182 (423)
Q Consensus 108 ~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ilv~T~~~l~~~~~ 182 (423)
+...+ ...+|+||+|+++|+.|+++.|.++.... ++.|..+.|..+.+.+...+.+..+ +|+|+||++|.+++.
T Consensus 208 L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 87663 45699999999999999999999998775 8899999999999999999988767 999999999999998
Q ss_pred -cCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHH----------------------------------hCCCCceEEE
Q 014486 183 -DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK----------------------------------MTPHDKQVMM 227 (423)
Q Consensus 183 -~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~v~ 227 (423)
...+.+.+++++||||||++++ ..|...+-.+.. .+.+..+.++
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~-qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLD-QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred CCCCcchhhceEEEechHHHHHH-HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 5678899999999999999986 344333322221 1122335778
Q ss_pred EeccCCccHHHHHHHhccCCceeeeccc--cc-cccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHH
Q 014486 228 FSATLSKEIRPVCKKFMQDPMEIYVDDE--AK-LTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304 (423)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l 304 (423)
+|||+..+-..+....++.|....+... .. .....+....+......+...+..++......++|+|+++.+.+.++
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl 445 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL 445 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHH
Confidence 8888877766666656666643333211 11 11223334444445556778888899888889999999999999999
Q ss_pred HHHHH----hCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccC
Q 014486 305 NKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380 (423)
Q Consensus 305 ~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 380 (423)
...|+ ..++++..+.|.++...|...++.|..|.+++|||+++++||+|+.++++||+|++|.+..+|+||+||++
T Consensus 446 ~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 446 AHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred HHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccc
Confidence 98887 34677778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEecCcccHHHHHHHHHH
Q 014486 381 RFGTKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 381 R~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
|+|+.|.++.+.+..+.....+.+++.
T Consensus 526 RAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 526 RAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred cccCCceEEEeeccccchHHHHHHHHh
Confidence 999999999999987776666655543
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.5e-50 Score=394.14 Aligned_cols=334 Identities=20% Similarity=0.234 Sum_probs=259.9
Q ss_pred CCCCCHHHHHHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHH
Q 014486 50 DFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (423)
Q Consensus 50 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (423)
.|+++..+...++. +|+..+||+|.++|+.++.|+++++.+|||+|||++|++|++... ..+|||+|+++|+.
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~------GiTLVISPLiSLmq 514 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP------GITLVISPLVSLIQ 514 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC------CcEEEEeCHHHHHH
Confidence 57777777777766 499999999999999999999999999999999999999998752 27999999999998
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc-----CCCcEEEechHHHHH---HHhc--CCCCCCCccEEEEcC
Q 014486 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN-----ECPQIVVGTPGRILA---LARD--KDLSLKNVRHFILDE 198 (423)
Q Consensus 129 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ilv~T~~~l~~---~~~~--~~~~~~~~~~vVvDE 198 (423)
++...+... ++....+.++.....+...+.. +.++|+++||+++.. ++.. .......+.+|||||
T Consensus 515 DQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDE 589 (1195)
T PLN03137 515 DQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDE 589 (1195)
T ss_pred HHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCc
Confidence 666555442 7888899998877666554432 568999999999852 1211 111234578899999
Q ss_pred cchhhcc-CCcHHHHHHH--HHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHH-
Q 014486 199 CDKMLES-LDMRRDVQEI--FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE- 274 (423)
Q Consensus 199 ~h~~~~~-~~~~~~~~~~--~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (423)
||++..| .+|+..+..+ +....+..+++++|||++..+...+...+........... ....++ .+...+...
T Consensus 590 AHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL--~y~Vv~k~kk 665 (1195)
T PLN03137 590 AHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNL--WYSVVPKTKK 665 (1195)
T ss_pred chhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccce--EEEEeccchh
Confidence 9999986 4688877664 3333346789999999998887755554433222222111 111222 122222222
Q ss_pred HHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCC
Q 014486 275 KNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (423)
Q Consensus 275 ~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld 353 (423)
....+..++... ...+.||||.+++.++.++..|...|+.+..|||+|++.+|..+++.|..|+++|||||.++++|||
T Consensus 666 ~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGID 745 (1195)
T PLN03137 666 CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGIN 745 (1195)
T ss_pred HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCC
Confidence 234455555433 3568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccH
Q 014486 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 354 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
+|++++||+|++|.++..|+|++|||||.|.++.|++|++..+..
T Consensus 746 kPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 746 KPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred ccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 999999999999999999999999999999999999999864443
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.3e-51 Score=369.31 Aligned_cols=357 Identities=32% Similarity=0.550 Sum_probs=325.5
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
....|+++.+...++..|...+|..|+++|..|||.++.+-|+||.+..|+|||++|.+.+++.+......+..+|++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 44578999999999999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
|++|.|+.+.+..++..+.++++.++.||+........+... +|+|+||+++..+++...++.+.++++|+||||.+.
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~--rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQT--RIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhc--eEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence 999999999999999988899999999999988887777664 899999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH--------HH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL--------EK 275 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 275 (423)
+...|...+..+...+|+.+|++.+|||.|..+...+..++.+|..+....... ..-++.+++...... .|
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccCCcchHHHHHHH
Confidence 877899999999999999999999999999999999999999998777655443 344555555444322 36
Q ss_pred HHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC
Q 014486 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (423)
Q Consensus 276 ~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~ 355 (423)
...|..+.+.++....||||+....|+.++..|+..|+++.++.|.|++.+|..+++.++.-..+|||+|+..++|||-+
T Consensus 260 lq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 260 LQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHH
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQ 403 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~ 403 (423)
+++.||+.|+|-+..+|.||+|||||.|..|.++.|+....+..-+..
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~ 387 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTA 387 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHH
Confidence 999999999999999999999999999999999999987666444333
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-49 Score=379.23 Aligned_cols=318 Identities=21% Similarity=0.255 Sum_probs=247.8
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
+||..|+|+|.++++.++.++++++.+|||+|||++|++|++... ..+||++|+++|+.|+.+.+..+ +
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~------~~~lVi~P~~~L~~dq~~~l~~~-----g 75 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD------GITLVISPLISLMEDQVLQLKAS-----G 75 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC------CcEEEEecHHHHHHHHHHHHHHc-----C
Confidence 499999999999999999999999999999999999999988642 27899999999999998888754 6
Q ss_pred ceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHH-hcCCC-CCCCccEEEEcCcchhhcc-CCcHHHHHHH--
Q 014486 144 IKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALA-RDKDL-SLKNVRHFILDECDKMLES-LDMRRDVQEI-- 215 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~-~~~~~-~~~~~~~vVvDE~h~~~~~-~~~~~~~~~~-- 215 (423)
+....+.++....... ..+..+.++|+++||+.+.... ....+ ...++++||+||||++.+| .+|+..+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 7777777776654332 2334566899999999875321 00111 4578899999999999875 4577766554
Q ss_pred -HHhCCCCceEEEEeccCCccHHHHHHHhcc--CCceeeeccccccccccceEEEEEeChHHHHHHHHHHHH-hhcCCcE
Q 014486 216 -FKMTPHDKQVMMFSATLSKEIRPVCKKFMQ--DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-ALDFNQV 291 (423)
Q Consensus 216 -~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~~ 291 (423)
...+ +..+++++|||+++.....+...+. .+..+ ..... .+.+. .............+..++. ..++.++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~---r~nl~-~~v~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFD---RPNLY-YEVRRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCC---CCCcE-EEEEeCCccHHHHHHHHHHHhcCCCce
Confidence 3333 4678999999999877655544432 23222 11111 11121 1111122233445555555 4455567
Q ss_pred EEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcch
Q 014486 292 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371 (423)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~ 371 (423)
||||++++.++.+++.|+..|+.+..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||++++|.|+..
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCceEEEEEecCcccH
Q 014486 372 YLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 372 ~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
|+||+||+||.|+++.+++++++.+..
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHH
Confidence 999999999999999999999875443
No 37
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-50 Score=386.12 Aligned_cols=363 Identities=32% Similarity=0.545 Sum_probs=323.5
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-----CCCCe
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-----NPGQV 115 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-----~~~~~ 115 (423)
.+....+|.+.+++.-++..++++||..|+|+|.+|||+++.|+++|..|.||||||++|++|++.+... .+.+|
T Consensus 360 ~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGP 439 (997)
T KOG0334|consen 360 CPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGP 439 (997)
T ss_pred CCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCc
Confidence 3344567999999999999999999999999999999999999999999999999999999999965432 24578
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC---CCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS---LKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~---~~~~~ 192 (423)
.++|++||++|+.|+.++++.|+... ++.+..++||.....+...+..+ ..|+||||+++.+++-.+... +.++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999885 99999999999999999999999 699999999999977655444 45555
Q ss_pred EEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC-
Q 014486 193 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS- 271 (423)
Q Consensus 193 ~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 271 (423)
++|+||||++.+ .+|.+....|+..+++.+|.+++|||+|..+..+....++.|..+.+.... .....+.+.+..+.
T Consensus 518 ~lv~deaDrmfd-mgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 518 YLVLDEADRMFD-MGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAI 595 (997)
T ss_pred eeeechhhhhhe-eccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecC
Confidence 999999999995 899999888999999999999999999999999999999888886665433 34456666777777
Q ss_pred hHHHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCcccc
Q 014486 272 ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350 (423)
Q Consensus 272 ~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~ 350 (423)
+.+|...+.++|... ..+++||||.+.+.|+.+.+.|.+.|+++..+||+.++.+|..++..|+++.+++||+|+.+++
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 888999999998655 5689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHH
Q 014486 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFM 408 (423)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
|+|++.+..||+|++|..+.+|+||+||+||+|.+|.+++|+.+ ++..+-..|-+.|
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al 732 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKAL 732 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 5555555555555
No 38
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-50 Score=349.36 Aligned_cols=362 Identities=31% Similarity=0.509 Sum_probs=325.2
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecC
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHT 123 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~ 123 (423)
+..|++++|+..+.+++.+.||+.|+|+|++.+|.++.+++++-.+-||||||.+|++|+++.+.... .+.++++++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 67899999999999999999999999999999999999999999999999999999999999876543 55699999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|..+..+++.... +++...++||.+.+++...+..+ +||+++||+++..+.-.-.+.++.+.+||+||++++.
T Consensus 100 reLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEEecCceeeeeehheeccccceeeeeehhhhHHH
Confidence 999999999999998776 88999999999999998888766 6999999999998777767889999999999999999
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 283 (423)
+ .+|...+..++..++...|.+++|||+|+.+..+.+.-+..|..+.++.+.... ......+..+...+|...|..++
T Consensus 178 e-mgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkis-e~lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 178 E-MGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKIS-ELLKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred h-hhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcc-hhhhhheeeeccHHHHHHHHHHH
Confidence 8 899999999999999999999999999999999999999999888766555433 34455567777888888877777
Q ss_pred Hhhc-CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE
Q 014486 284 DALD-FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (423)
Q Consensus 284 ~~~~-~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~ 362 (423)
.... ..+++||+.+..+++.+...|++.|+.+..++|.+.+..|..-+..|+.++..+||.|+.+++|+|+|-.+.||+
T Consensus 256 ~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin 335 (529)
T KOG0337|consen 256 GGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN 335 (529)
T ss_pred hccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc
Confidence 6553 367999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcc
Q 014486 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLL 411 (423)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (423)
|+.|.+...|.||+||+.|+|..|..+.++.+ .+..++-.|.-.++..
T Consensus 336 yd~p~~~klFvhRVgr~aragrtg~aYs~V~~-~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 336 YDFPPDDKLFVHRVGRVARAGRTGRAYSLVAS-TDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccCCCCCceEEEEecchhhccccceEEEEEec-ccchhhhhhhhhcCCc
Confidence 99999999999999999999999999999986 4555566666666643
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-48 Score=380.15 Aligned_cols=326 Identities=18% Similarity=0.267 Sum_probs=254.9
Q ss_pred CCHHHHHHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHH
Q 014486 53 LKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (423)
Q Consensus 53 l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (423)
......+.|++ +||..|+|+|+++++.++.|+++++.+|||+|||++|++|++.... .+||++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g------~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDG------LTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCC------CEEEEecHHHHHHHHH
Confidence 33444455555 4999999999999999999999999999999999999999986521 7899999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc-CC
Q 014486 132 HEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LD 207 (423)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~-~~ 207 (423)
+.++.. ++....+.++........ .+.++..+++++||+++........+...++++||+||||++..| .+
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 888764 567777777766554332 344566799999999987422112233457899999999999875 45
Q ss_pred cHHHHHHH---HHhCCCCceEEEEeccCCccHHHHHHHhcc--CCceeeeccccccccccceEEEEEeChHHHHHHHHHH
Q 014486 208 MRRDVQEI---FKMTPHDKQVMMFSATLSKEIRPVCKKFMQ--DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (423)
Q Consensus 208 ~~~~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 282 (423)
|+..+..+ ...+ +..+++++|||+++.....+...+. .+. +...... .+.+ .+.......+...+..+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~~~~~~---r~nl--~~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL-IQISSFD---RPNI--RYTLVEKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeE-EEECCCC---CCcc--eeeeeeccchHHHHHHH
Confidence 77665444 3333 4678999999999876654433332 232 2221111 1111 12222223344556667
Q ss_pred HHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE
Q 014486 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (423)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~ 362 (423)
+....++++||||+++++++.+++.|+..|+.+..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 363 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
|++|.|...|.||+||+||.|.+|.+++|+++.+
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 9999999999999999999999999999998754
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.2e-48 Score=377.34 Aligned_cols=321 Identities=22% Similarity=0.296 Sum_probs=257.1
Q ss_pred HHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 59 RAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 59 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
+.|++ +||.+++|+|.++++.++.|+++++++|||+|||++|++|++... ..++|++|+++|+.|+.+.++.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~------g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK------GLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC------CcEEEEcCCHHHHHHHHHHHHHc
Confidence 34554 599999999999999999999999999999999999999988542 17899999999999999888774
Q ss_pred hccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc-CCcHHHHH
Q 014486 138 STYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQ 213 (423)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~-~~~~~~~~ 213 (423)
++.+..++++.+...... .+..+..+|+++||+++........+...++++||+||||++..| .+|+..+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 678888888876654433 344566899999999986533333345568899999999999875 46777766
Q ss_pred HHH---HhCCCCceEEEEeccCCccHHHHHHHhccCC-ceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCC
Q 014486 214 EIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQDP-MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 289 (423)
Q Consensus 214 ~~~---~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 289 (423)
.+. ..++ ..+++++|||++......+...+..+ ........ ....+ .+.......+...+.+++....+.
T Consensus 152 ~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~ 225 (591)
T TIGR01389 152 RLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSF---DRPNL--RFSVVKKNNKQKFLLDYLKKHRGQ 225 (591)
T ss_pred HHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC---CCCCc--EEEEEeCCCHHHHHHHHHHhcCCC
Confidence 554 3344 44599999999988776665554322 11222111 11222 222223334556677777777778
Q ss_pred cEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCc
Q 014486 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSA 369 (423)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~ 369 (423)
++||||++++.++.+++.|...|+++..+|++|+..+|..+++.|.+|+++|||||+++++|+|+|++++||++++|.|+
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccCCCCCceEEEEEecCcc
Q 014486 370 DTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 370 ~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
..|.|++||+||.|+++.+++++++.+
T Consensus 306 ~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 306 ESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred HHHhhhhccccCCCCCceEEEecCHHH
Confidence 999999999999999999999987643
No 41
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-48 Score=349.27 Aligned_cols=366 Identities=31% Similarity=0.413 Sum_probs=302.6
Q ss_pred cccCCCCcC----CCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-----C
Q 014486 42 GIHSSGFRD----FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----P 112 (423)
Q Consensus 42 ~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~ 112 (423)
+....+|.+ |..++.+++++...+|..|+|+|.+++|.++.+.+++.|+|||+|||++|.+|++.++... .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 333445654 7788999999999999999999999999999999999999999999999999999876532 4
Q ss_pred CCeEEEEEecChHHHHHHHHHHHHHh--ccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCC
Q 014486 113 GQVTALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSL 188 (423)
Q Consensus 113 ~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~ 188 (423)
.+.+++|+.|+++|+.|++.++.++. ... +.....+............+....++++++||-++...+.... ..+
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 55689999999999999999999886 222 2333333322221222222222336999999999999888765 678
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCC-CCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEE
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 267 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (423)
..+.++|+||+|.+.+...|...+..++..+. ++..+-++|||.+..+..+++.....+..+.+.........-.....
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qelv 366 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELV 366 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhe
Confidence 99999999999999984378888888877664 46677889999999999999998888877766555444333333344
Q ss_pred EEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHH-HhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC
Q 014486 268 IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL-VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (423)
Q Consensus 268 ~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~ 346 (423)
+...+..|...+.+++...-.-+++||+.+.+.|..+...| .-.++.+..+||..++.+|...+++|+.|++++||||+
T Consensus 367 F~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd 446 (593)
T KOG0344|consen 367 FCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD 446 (593)
T ss_pred eeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh
Confidence 55677888999999998887789999999999999999999 77799999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 347 ~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|+|+.++++||+||.|.+...|+||+||+||+|+.|.++.||+. .+...+..+.+.+.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd-~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTD-QDMPRIRSIAEVME 508 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecc-ccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 66666777776665
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.1e-46 Score=373.95 Aligned_cols=340 Identities=23% Similarity=0.304 Sum_probs=246.3
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC------CCCeEEEEEecChHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTREL 126 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L 126 (423)
+++.+.+.+.+ +|..|+|+|+++++.++.|+++++++|||||||++|++|++..+... ..++++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 45666666555 78999999999999999999999999999999999999999765421 234689999999999
Q ss_pred HHHHHHHHHHH-------h----ccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccE
Q 014486 127 AYQICHEFERF-------S----TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRH 193 (423)
Q Consensus 127 ~~q~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~ 193 (423)
+.|+++.+... . ...+++++...+|+.......+.+.+. ++|+|+||++|..++....+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~-p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP-PHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC-CCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99998866532 2 223477899999998877776666655 69999999999887765443 4688999
Q ss_pred EEEcCcchhhccCCc----HHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccC-----Cceeeeccccccccccce
Q 014486 194 FILDECDKMLESLDM----RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD-----PMEIYVDDEAKLTLHGLV 264 (423)
Q Consensus 194 vVvDE~h~~~~~~~~----~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 264 (423)
||+||+|.+.+ ... ...+.++....+...|++++|||+++. .......... +..+.+..........+.
T Consensus 176 VVIDE~H~l~~-~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAE-NKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIK 253 (876)
T ss_pred EEEechhhhcc-CccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEE
Confidence 99999999985 222 233455555555678999999999762 2222222111 111111110000000000
Q ss_pred E-----EEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHH
Q 014486 265 Q-----HYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRY 331 (423)
Q Consensus 265 ~-----~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~ 331 (423)
. .............+...+... ..+++||||++++.++.++..|+.. +..+..+||++++.+|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0 000011111112222222221 3478999999999999999999873 46788999999999999999
Q ss_pred HhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC-CCceEEEEEecCcc
Q 014486 332 KGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVSSAS 396 (423)
Q Consensus 332 ~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~~~ 396 (423)
+.|++|++++||||+++++|+|+|++++||+++.|.++..|+||+||+||. |..+.+.++....+
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~ 399 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRD 399 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCch
Confidence 999999999999999999999999999999999999999999999999986 44455555544433
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-46 Score=371.29 Aligned_cols=335 Identities=21% Similarity=0.304 Sum_probs=251.8
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.|+++++++.+.+.+.+.|+..|+|+|.++++. +..++++++++|||||||+++.++++..+..+ .+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~---~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG---GKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC---CcEEEEeChHH
Confidence 478899999999999999999999999999998 67799999999999999999999999887643 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+++.++++.. . ++++..++|+...... .+ +.++|+|+||+++..++++....+.++++||+||+|.+.+
T Consensus 79 La~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d- 151 (737)
T PRK02362 79 LASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS- 151 (737)
T ss_pred HHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC-
Confidence 99999999998753 2 7899999998754332 12 2369999999999998887666678999999999999876
Q ss_pred CCcHHHHHHHHH---hCCCCceEEEEeccCCccHHHHHHHhccC-------Cceee--eccccccccccceEEEEEeCh-
Q 014486 206 LDMRRDVQEIFK---MTPHDKQVMMFSATLSKEIRPVCKKFMQD-------PMEIY--VDDEAKLTLHGLVQHYIKLSE- 272 (423)
Q Consensus 206 ~~~~~~~~~~~~---~~~~~~~~v~~SAT~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~- 272 (423)
..+...+..+.. ......|+|++|||+++. ..+....... |..+. +.......... .........
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~ 229 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSK 229 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccc
Confidence 456555554433 345678999999999863 2222222111 11100 00000000000 000010011
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC------------------------------------CCCeE
Q 014486 273 LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------------------------------------NFPSI 316 (423)
Q Consensus 273 ~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------------~~~~~ 316 (423)
......+.+.+. .++++||||++++.+..+++.|... ...+.
T Consensus 230 ~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 230 DDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred hHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 112222222222 4689999999999998888777542 13577
Q ss_pred EEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----cc-----CCCCcchhhhcccccCCCCCc--
Q 014486 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-----MPDSADTYLHRVGRAGRFGTK-- 385 (423)
Q Consensus 317 ~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~-- 385 (423)
.+|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. |+ .|.++.+|.||+|||||.|.+
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999986 55 588999999999999999865
Q ss_pred eEEEEEecCc
Q 014486 386 GLAITFVSSA 395 (423)
Q Consensus 386 ~~~~~~~~~~ 395 (423)
|.+++++.+.
T Consensus 388 G~~ii~~~~~ 397 (737)
T PRK02362 388 GEAVLLAKSY 397 (737)
T ss_pred ceEEEEecCc
Confidence 8888888653
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.8e-45 Score=362.19 Aligned_cols=336 Identities=19% Similarity=0.254 Sum_probs=253.9
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.|+++++++.+.+.+.+.|+..|+|+|.++++. ++.++++++++|||||||+++.++++..+...+ .++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~--~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG--GKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC--CeEEEEeChHH
Confidence 477889999999999999999999999999986 788999999999999999999999998765432 38999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+++.++.+.. . ++++..++|+...... .+ +.++|+|+||+++..+++.....+.++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~- 152 (720)
T PRK00254 80 LAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS- 152 (720)
T ss_pred HHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC-
Confidence 99999999987643 3 7899999998764322 12 2369999999999988887666688999999999999976
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh-------HHHHHH
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-------LEKNRK 278 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 278 (423)
..+...+..+...+....|+|++|||+++. ..+.. ++..........+...........+..... ......
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 567788888888888889999999999863 33433 333221111000000000000001111111 111122
Q ss_pred HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC---------------------------------CCCeEEEcCCCCHH
Q 014486 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------------------------------NFPSICIHSGMSQE 325 (423)
Q Consensus 279 l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~~ 325 (423)
+.+.++ .++++||||++++.+..++..|... ...+..+|+++++.
T Consensus 231 ~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 231 VYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 333343 3578999999999988776555321 23588899999999
Q ss_pred HHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE-------ccCCC-CcchhhhcccccCCCC--CceEEEEEecCc
Q 014486 326 ERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------YDMPD-SADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (423)
Q Consensus 326 ~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~-------~~~~~-s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 395 (423)
+|..+++.|++|.++|||||+++++|+|+|..++||. ++.|. ++.+|.||+|||||.| ..|.+++++.+.
T Consensus 309 eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 309 ERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999999999999999999999999999999999984 34333 4668999999999975 568899888754
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2e-44 Score=347.48 Aligned_cols=335 Identities=26% Similarity=0.322 Sum_probs=268.3
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-----CCCeEEEEEecChHHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELA 127 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~ 127 (423)
+++.+.+.+... |..|||.|.++++.+..|+|+++.||||||||+++++|++..+... ..+..||||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678899999888 9999999999999999999999999999999999999999887655 2346899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCCCCccEEEEcCcchhhcc
Q 014486 128 YQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 128 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~~~~~~vVvDE~h~~~~~ 205 (423)
..+..++..+.... |+.+.+.+|++...+..+...+. |+|+++||++|.-++.... ..+.++++||+||.|.+.+.
T Consensus 87 ~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~P-PdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 87 NDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNP-PHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCC-CcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 99999999998876 99999999999988877777776 7999999999988776543 34789999999999999753
Q ss_pred ---CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccC--CceeeeccccccccccceEEEE-----EeChHHH
Q 014486 206 ---LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD--PMEIYVDDEAKLTLHGLVQHYI-----KLSELEK 275 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 275 (423)
....-.+.++....+ ..|.|++|||..+. ....+..... +..+......+...-.+..... .......
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAAL 242 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHH
Confidence 223445666666666 89999999998743 3444444443 2233222211110000000000 0011223
Q ss_pred HHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCC-CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCC
Q 014486 276 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (423)
Q Consensus 276 ~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~ 354 (423)
...+.++++.+ ..+|||+|++..++.+...|+..+ .++...||.++...|..+.++|++|+.+.+|||+.++-|||+
T Consensus 243 ~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 243 YERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 45566666665 489999999999999999999987 788899999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCcchhhhcccccCC-CCCceEEEEEecC
Q 014486 355 ERVNIVINYDMPDSADTYLHRVGRAGR-FGTKGLAITFVSS 394 (423)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~g~~~~~~~~~~~ 394 (423)
.+++.||+++.|+++..+.||+||+|+ .|...+++++..+
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999996 5666777777765
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.4e-44 Score=334.94 Aligned_cols=324 Identities=21% Similarity=0.283 Sum_probs=256.8
Q ss_pred HHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 59 RAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 59 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
..|.+ +|+..+++-|.++|..++.++++++..|||.|||++|.+|++-.-. .+|||+|..+|...+.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G------~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEG------LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCC------CEEEECchHHHHHHHHHHHHHc
Confidence 34444 3899999999999999999999999999999999999999988722 7899999999999999888875
Q ss_pred hccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc-CCcHHHHH
Q 014486 138 STYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQ 213 (423)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~-~~~~~~~~ 213 (423)
++.+..+.+..+..+.. ..+..+..++++.+|+++..-.....+.-..+.+++|||||+++.| ++|++.+.
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 67888888876655544 3445577899999999886532222223456789999999999997 67998887
Q ss_pred HHHHhCCC--CceEEEEeccCCccHHHHHHHhccCCc-eeeeccccccccccceEEEEEe-ChHHHHHHHHHHHHhhcCC
Q 014486 214 EIFKMTPH--DKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDALDFN 289 (423)
Q Consensus 214 ~~~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~ 289 (423)
.+...... +.+++.+|||.++.+...+...+.... .++...... +++....... ....+...+.+ +.....+
T Consensus 156 ~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR---pNi~~~v~~~~~~~~q~~fi~~-~~~~~~~ 231 (590)
T COG0514 156 RLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR---PNLALKVVEKGEPSDQLAFLAT-VLPQLSK 231 (590)
T ss_pred HHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC---chhhhhhhhcccHHHHHHHHHh-hccccCC
Confidence 77543322 678999999999988877666554322 233222221 2221111111 12223332222 1244557
Q ss_pred cEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCc
Q 014486 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSA 369 (423)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~ 369 (423)
+.||||.+++.++.+++.|...|+.+..||++|+..+|..+.+.|..++++|+|||.++++|||.|++++||||++|.|+
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccCCCCCceEEEEEecCccc
Q 014486 370 DTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 370 ~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+.|.|-+|||||.|.+..+++++++.+.
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccH
Confidence 9999999999999999999999997553
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.4e-43 Score=349.24 Aligned_cols=324 Identities=21% Similarity=0.201 Sum_probs=247.8
Q ss_pred CCCCHHHHHHHHh-CCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 51 FLLKPELLRAIVD-SGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 51 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
++.+...++.+.+ .+| .||+.|.++++.++.+ .+.+++||||+|||.+++.+++..+..+ .+++|++||
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT 509 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPT 509 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCc
Confidence 4455566666666 488 5999999999999885 6899999999999999999988876543 389999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcc
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h 200 (423)
++||.|+++.++++.... ++++..++|+.+..+.. ..+.++.++|+|+||..+ .....+.+++++|+||+|
T Consensus 510 ~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 510 TLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccc
Confidence 999999999999887665 67888888877654433 345566689999999533 245678899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (423)
++.. .....+..++...++++||||+.+...........++..+...+... ..+...+...........+.
T Consensus 584 rfgv------~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v~~~~~~~i~~~i~ 654 (926)
T TIGR00580 584 RFGV------KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFVMEYDPELVREAIR 654 (926)
T ss_pred ccch------hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEEEecCHHHHHHHHH
Confidence 8632 22334455667889999999987765554433344444443332221 11222222222111111111
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCC
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN 358 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~ 358 (423)
.-+ ..+++++|||++++.++.+++.|+.. ++++..+||+|++.+|..++.+|++|+.+|||||+++++|+|+|+++
T Consensus 655 ~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~ 732 (926)
T TIGR00580 655 REL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN 732 (926)
T ss_pred HHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCC
Confidence 111 24578999999999999999999985 78899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCC-CcchhhhcccccCCCCCceEEEEEecCc
Q 014486 359 IVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 359 ~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
+||+++.|. +..+|.|++||+||.|+.|.|++++.+.
T Consensus 733 ~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 733 TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999865 6778999999999999999999998653
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-43 Score=348.28 Aligned_cols=333 Identities=21% Similarity=0.307 Sum_probs=244.2
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.|+++++++.+.+.+.+.+|. |+++|.++++.+..++++++++|||||||+++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 467889999999999999986 9999999999999999999999999999999999998876543 289999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC
Q 014486 127 AYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (423)
Q Consensus 127 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~ 206 (423)
+.|+++.++++.. . +.++...+|+...... .+ .. ++|+|+||+++..++.+....+.++++||+||+|.+.+ .
T Consensus 78 a~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~~-~~-~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d-~ 150 (674)
T PRK01172 78 AMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--FI-KR-YDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD-E 150 (674)
T ss_pred HHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--hh-cc-CCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC-C
Confidence 9999999987643 2 6788888887654322 12 22 59999999999988887666688999999999999876 4
Q ss_pred CcHHHHHHHH---HhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccc-cc---eEEEEEeChHHHHHHH
Q 014486 207 DMRRDVQEIF---KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH-GL---VQHYIKLSELEKNRKL 279 (423)
Q Consensus 207 ~~~~~~~~~~---~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l 279 (423)
.+...+..+. ...++..|+|++|||+++. ..+.+ ++.... +..... ..+.. .+ ...+.. ........+
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~~~~r-~vpl~~~i~~~~~~~~~-~~~~~~~~~ 225 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IKSNFR-PVPLKLGILYRKRLILD-GYERSQVDI 225 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cCCCCC-CCCeEEEEEecCeeeec-ccccccccH
Confidence 5554444443 3456688999999999763 33333 332211 100000 00000 00 000000 000011112
Q ss_pred HHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhC-------------------------CCCeEEEcCCCCHHHHHHHHH
Q 014486 280 NDLLDA--LDFNQVVIFVKSVSRAAELNKLLVEC-------------------------NFPSICIHSGMSQEERLTRYK 332 (423)
Q Consensus 280 ~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~~~~ 332 (423)
..++.. ..++++||||++++.+..+++.|... ...+..+|+++++.+|..+++
T Consensus 226 ~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 226 NSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred HHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 333332 24679999999999999998888653 124677899999999999999
Q ss_pred hhhcCCccEEEEcCccccCCCCCCCCEEEEccC---------CCCcchhhhcccccCCCCC--ceEEEEEecCcc
Q 014486 333 GFKEGNKRILVATDLVGRGIDIERVNIVINYDM---------PDSADTYLHRVGRAGRFGT--KGLAITFVSSAS 396 (423)
Q Consensus 333 ~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~~ 396 (423)
.|++|.++|||||+++++|+|+|+.. ||+.+. |.++.+|.||+|||||.|. .|.+++++....
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999999999864 454432 4577889999999999985 567777765443
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.5e-42 Score=333.89 Aligned_cols=316 Identities=21% Similarity=0.260 Sum_probs=235.7
Q ss_pred CCCCCCChhhhhcccccccCC-ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEE-EecChHHHHHHHHHHHHHhccC
Q 014486 64 SGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV-LCHTRELAYQICHEFERFSTYL 141 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li-l~P~~~L~~q~~~~~~~~~~~~ 141 (423)
.||. |+|+|.++++.++.|+ ++++.+|||||||.++.++++... .....++.|| ++|+++|+.|+++.+.++....
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-IGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-ccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 3886 9999999999999998 577889999999997665555432 2233345555 6799999999999999988754
Q ss_pred C----------------------CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcC--------CC---C
Q 014486 142 P----------------------DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDK--------DL---S 187 (423)
Q Consensus 142 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~-~~~~~--------~~---~ 187 (423)
+ .+++..++||.+...+...+..+ ++|+|+|++.+.. .+.++ .+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~ 168 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGF 168 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHHHcCCccccccccccccccchhhh
Confidence 2 47899999999998888888776 6999999765543 11100 01 2
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhC--CCC---ceEEEEeccCCccHHHHHHHhccCCceeeecccccccccc
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMT--PHD---KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG 262 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~--~~~---~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (423)
+.+++++|+|||| +. .+|...+..+...+ ++. .|+++||||++.+.......+...+..+.+... ......
T Consensus 169 L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~-~l~a~k 244 (844)
T TIGR02621 169 LGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK-RLAAKK 244 (844)
T ss_pred hccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc-cccccc
Confidence 5789999999999 34 68999999999864 332 699999999998887776666666654443221 122222
Q ss_pred ceEEEEEeChHHHHHHHHHHH---HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHH-----HHHHhh
Q 014486 263 LVQHYIKLSELEKNRKLNDLL---DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL-----TRYKGF 334 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~ll---~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f 334 (423)
+.+ +.......+...+...+ ....++++||||++++.++.+++.|+..++ ..+||+|++.+|. .+++.|
T Consensus 245 i~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 245 IVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred eEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHH
Confidence 233 33444433332222221 123457899999999999999999998876 8999999999999 788999
Q ss_pred hc----CC-------ccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCce-EEEEEe
Q 014486 335 KE----GN-------KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG-LAITFV 392 (423)
Q Consensus 335 ~~----~~-------~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~-~~~~~~ 392 (423)
++ +. ..|||||+++++|+|++. ++||++..| ...|+||+||+||.|+.+ ..+.++
T Consensus 322 k~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 322 LPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 87 43 679999999999999986 888887655 589999999999999853 334444
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.9e-42 Score=349.53 Aligned_cols=317 Identities=20% Similarity=0.193 Sum_probs=245.7
Q ss_pred HHHHHHHhCCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 56 ELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 56 ~~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
...+.....+| .||+.|.++++.++.+ .+.+++++||+|||.+++.++...... +.+++|++||++||.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 34445556688 7999999999999986 789999999999999988777665543 3389999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHHH---hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC
Q 014486 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL 206 (423)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~ 206 (423)
+++.+++..... ++++..++++.+..++...+ .++.++|+|+||+.+. ....+.+++++|+||+|++..
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--
Confidence 999999876555 57888888888776665443 3466899999997442 345678899999999998732
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh-HHHHHHHHHHHHh
Q 014486 207 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDA 285 (423)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~ 285 (423)
.. ...++.++.+.|++++|||+.+....+....+.++..+...+.... .+......... ..+...+.++.
T Consensus 737 ~~----~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~---~v~~~~~~~~~~~~k~~il~el~-- 807 (1147)
T PRK10689 737 RH----KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL---AVKTFVREYDSLVVREAILREIL-- 807 (1147)
T ss_pred hH----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCC---CceEEEEecCcHHHHHHHHHHHh--
Confidence 22 2334566778999999999988777766666666665554333221 12222222221 12222233332
Q ss_pred hcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 286 LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
.+++++|||++++.++.+++.|+.. +.++..+||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||..
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 3578999999999999999999887 7889999999999999999999999999999999999999999999999965
Q ss_pred cCC-CCcchhhhcccccCCCCCceEEEEEecC
Q 014486 364 DMP-DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 364 ~~~-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
+.. .+..+|.|++||+||.|+.|.|++++.+
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 543 4667899999999999999999998864
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-41 Score=334.88 Aligned_cols=320 Identities=20% Similarity=0.257 Sum_probs=236.6
Q ss_pred HHHHHHHHh-CCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHH
Q 014486 55 PELLRAIVD-SGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (423)
Q Consensus 55 ~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (423)
..+.+.+.+ .+| .||++|+++++.+..+ .+.+++||||||||++|+++++..+.. +.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 344444444 477 6999999999999886 379999999999999999999887754 33899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 128 YQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 128 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
.|+++.++++.... ++++..++|+.+..... ..+.++.++|+|+||+.+.. ...+.++++||+||+|++..
T Consensus 324 ~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 324 EQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH
Confidence 99999999998765 78999999998764443 44556778999999987642 34578899999999998742
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 284 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 284 (423)
..+. .+......+++++||||+.+...............+...+. ....+...... ...+...+..+.+
T Consensus 398 --~qr~----~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~~--~~~~~~~~~~i~~ 466 (681)
T PRK10917 398 --EQRL----ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVIP--DSRRDEVYERIRE 466 (681)
T ss_pred --HHHH----HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEeC--cccHHHHHHHHHH
Confidence 2222 22333456889999999876544332211111111111111 11112222222 2222222222222
Q ss_pred h-hcCCcEEEEEcChh--------hHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCC
Q 014486 285 A-LDFNQVVIFVKSVS--------RAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (423)
Q Consensus 285 ~-~~~~~~ivf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld 353 (423)
. ..+++++|||+.++ .+..+++.|... ++++..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 467 ~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiD 546 (681)
T PRK10917 467 EIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVD 546 (681)
T ss_pred HHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcc
Confidence 2 24578999999654 455667777765 468999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCC-CcchhhhcccccCCCCCceEEEEEecCc
Q 014486 354 IERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 354 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
+|++++||+++.|. +..++.|++||+||.|.+|.|+++++..
T Consensus 547 ip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 547 VPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 99999999999987 5788999999999999999999999633
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-42 Score=306.03 Aligned_cols=335 Identities=21% Similarity=0.298 Sum_probs=250.5
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
+.-++|.||.......+.+ +.+++.|||.|||+++++.+...+...++ ++|+++||+.|+.|.+..+.++... |.-
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~i-p~~ 87 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGI-PED 87 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCC-Chh
Confidence 3447899999988877776 89999999999999999988888877665 8999999999999999999998755 356
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCce
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 224 (423)
.+..++|.....+....+.++ +|+|+||+.+.+-+..+.+++.++.++|+||||+..++ .....+.+.+....+++.
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~--kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn-yAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKK--KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN-YAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred heeeecCCCChHHHHHHHhhC--CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc-chHHHHHHHHHHhccCce
Confidence 788999998888787777776 99999999999988999999999999999999999873 444455555555566778
Q ss_pred EEEEeccCCccHHHHH---HHhccCCceeeeccc----------------------------------------------
Q 014486 225 VMMFSATLSKEIRPVC---KKFMQDPMEIYVDDE---------------------------------------------- 255 (423)
Q Consensus 225 ~v~~SAT~~~~~~~~~---~~~~~~~~~~~~~~~---------------------------------------------- 255 (423)
++++||||..+..... +.+....+.+.....
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999854432211 111111111110000
Q ss_pred ----c---c-----------------------------------------------------------ccc--c-----c
Q 014486 256 ----A---K-----------------------------------------------------------LTL--H-----G 262 (423)
Q Consensus 256 ----~---~-----------------------------------------------------------~~~--~-----~ 262 (423)
. . ... . .
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0 0 000 0 0
Q ss_pred ------------ceEEEEEeChHHHHHHHHHHHH----hhcCCcEEEEEcChhhHHHHHHHHHhCCCCeE-EE-------
Q 014486 263 ------------LVQHYIKLSELEKNRKLNDLLD----ALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CI------- 318 (423)
Q Consensus 263 ------------~~~~~~~~~~~~~~~~l~~ll~----~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~------- 318 (423)
............|...+.++++ ..+..++|||++.+++|+.+.+.|...+..+. .+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 0000000001112223333332 22456899999999999999999999987774 22
Q ss_pred -cCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCc--
Q 014486 319 -HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA-- 395 (423)
Q Consensus 319 -~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-- 395 (423)
..+|++.++.++++.|+.|+.+|||||+++++|+|+|.++.||+|++..|+-.++||.||+||. ++|.+++++...
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 2579999999999999999999999999999999999999999999999999999999999997 788999998876
Q ss_pred ccHHHHHHHHHH
Q 014486 396 SDSDILNQVSKF 407 (423)
Q Consensus 396 ~~~~~~~~~~~~ 407 (423)
++..++.++++.
T Consensus 484 deayy~~s~rke 495 (542)
T COG1111 484 DEAYYYSSRRKE 495 (542)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.4e-41 Score=333.04 Aligned_cols=319 Identities=20% Similarity=0.253 Sum_probs=234.1
Q ss_pred HHHHHHhCCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 57 LLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 57 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
+.+.+...+| +||+.|+++++.++.+ .+.+++||||||||++|+++++..+..+ .+++|++||++||.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHHH
Confidence 3455566688 7999999999999875 2579999999999999999998877643 3899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC
Q 014486 131 CHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (423)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~ 207 (423)
++.+++++... ++++..++|+...... ...+.++.++|+|+||..+.. ...+.++++||+||+|++.. .
T Consensus 301 ~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 301 YNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred HHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--H
Confidence 99999988765 7899999999876553 344556778999999987753 35678899999999998643 2
Q ss_pred cHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh-
Q 014486 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL- 286 (423)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~- 286 (423)
.+..+...... ...++++++|||+.+....... ........+... ......+..... ....+...+..+.+..
T Consensus 373 qr~~l~~~~~~-~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~-p~~r~~i~~~~~--~~~~~~~~~~~i~~~l~ 446 (630)
T TIGR00643 373 QRKKLREKGQG-GFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDEL-PPGRKPITTVLI--KHDEKDIVYEFIEEEIA 446 (630)
T ss_pred HHHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccC-CCCCCceEEEEe--CcchHHHHHHHHHHHHH
Confidence 22222221111 1257899999998765433321 111111111110 011111222222 2222222222233332
Q ss_pred cCCcEEEEEcChh--------hHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 287 DFNQVVIFVKSVS--------RAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 287 ~~~~~ivf~~~~~--------~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
.+++++|||+..+ .+..+++.|... ++++..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 4578999998763 455667777653 678999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCC-CcchhhhcccccCCCCCceEEEEEec
Q 014486 357 VNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 357 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
+++||+++.|. +..++.|++||+||.|++|.|++++.
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999986 67889999999999999999999984
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.3e-40 Score=338.99 Aligned_cols=321 Identities=21% Similarity=0.283 Sum_probs=229.7
Q ss_pred EEccCCCcchhHHHHHHhhccCCC----------CCCeEEEEEecChHHHHHHHHHHHHHh-----------ccCCCceE
Q 014486 88 CQAKSGMGKTAVFVLSTLQQTEPN----------PGQVTALVLCHTRELAYQICHEFERFS-----------TYLPDIKV 146 (423)
Q Consensus 88 i~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~lil~P~~~L~~q~~~~~~~~~-----------~~~~~~~~ 146 (423)
|++|||||||++|++|++..+... ..+.++|||+|+++|+.|+.++++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999876532 234689999999999999999887522 12247899
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCcchhhcc---CCcHHHHHHHHHhCCCC
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLES---LDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvDE~h~~~~~---~~~~~~~~~~~~~~~~~ 222 (423)
...+|+.+..++.+.+.+. ++|+|+||++|..++.+. ...+.++++|||||+|.+.+. ..+...+.++...++..
T Consensus 81 ~vrtGDt~~~eR~rll~~p-pdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNP-PDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCC-CCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 9999999988877766655 699999999998877643 346899999999999999862 12455677777777788
Q ss_pred ceEEEEeccCCccHHHHHHHhccC-CceeeeccccccccccceEEEEEeChHH-----------------H----HHHHH
Q 014486 223 KQVMMFSATLSKEIRPVCKKFMQD-PMEIYVDDEAKLTLHGLVQHYIKLSELE-----------------K----NRKLN 280 (423)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~----~~~l~ 280 (423)
.|+|++|||+++. ..+.+.+... +..+... ..... ..+ ...+...... . .....
T Consensus 160 ~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~-~~~r~-~~l-~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 160 AQRIGLSATVRSA-SDVAAFLGGDRPVTVVNP-PAMRH-PQI-RIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CeEEEEEeeCCCH-HHHHHHhcCCCCEEEECC-CCCcc-cce-EEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 9999999999873 4444433322 3333221 11111 111 1111111100 0 01111
Q ss_pred HHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCC---------------------------------CCeEEEcCCCCHHH
Q 014486 281 DLLDAL-DFNQVVIFVKSVSRAAELNKLLVECN---------------------------------FPSICIHSGMSQEE 326 (423)
Q Consensus 281 ~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~~~~~~~~~ 326 (423)
.++... ..+++||||+++..++.++..|++.. ..+..+||++++.+
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 233222 35789999999999999999887531 12457899999999
Q ss_pred HHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC-CCceEEEEEecCccc-HHHHHHH
Q 014486 327 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVSSASD-SDILNQV 404 (423)
Q Consensus 327 r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~~~~~~-~~~~~~~ 404 (423)
|..+++.|++|++++||||+.+++|||++++++||+++.|.++.+|+||+||+||. |..+.++++..+..+ .+....+
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~v 395 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIV 395 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999996 444555644443222 1222235
Q ss_pred HHHHhcchh
Q 014486 405 SKFMFLLIG 413 (423)
Q Consensus 405 ~~~~~~~~~ 413 (423)
+.++.-.++
T Consensus 396 e~~l~g~iE 404 (1490)
T PRK09751 396 ECMFAGRLE 404 (1490)
T ss_pred HHHhcCCCC
Confidence 555554443
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.2e-39 Score=332.94 Aligned_cols=284 Identities=24% Similarity=0.337 Sum_probs=216.6
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|+++|+.+++.++.|+++++.||||+|||.. .++++..+.. .+++++|++||++|+.|+++.++.+.... ++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~-~~ 152 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKV-GC 152 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhc-Cc
Confidence 66 89999999999999999999999999999964 4444443332 23489999999999999999999998765 67
Q ss_pred eEEEEEcCcch-----HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc----------CCcH
Q 014486 145 KVAVFYGGVNI-----KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMR 209 (423)
Q Consensus 145 ~~~~~~~~~~~-----~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~----------~~~~ 209 (423)
.+..+.++.+. ......+.++.++|+|+||++|.+++. .+....++++|+||||+++.+ .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 77777766542 233344555668999999999998776 345567999999999999852 3563
Q ss_pred -HHHHHHHHhCCC------------------------CceEEEEeccCCcc-HHHHHHHhccCCceeeeccccccccccc
Q 014486 210 -RDVQEIFKMTPH------------------------DKQVMMFSATLSKE-IRPVCKKFMQDPMEIYVDDEAKLTLHGL 263 (423)
Q Consensus 210 -~~~~~~~~~~~~------------------------~~~~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (423)
..+..++..++. ..|++++|||+++. ... .++..+..+.+.... ....++
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI 306 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNI 306 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-cccCCc
Confidence 456666655543 67999999999864 332 112233333332221 233455
Q ss_pred eEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhh---HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc
Q 014486 264 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (423)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 340 (423)
.+.+.... ++...+..+++... .++||||++.+. ++.+++.|...|+++..+||++ .+.+++|++|+++
T Consensus 307 ~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 307 VDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred eEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 55665544 56667778877665 589999999777 9999999999999999999999 2346999999999
Q ss_pred EEEE----cCccccCCCCCC-CCEEEEccCCC
Q 014486 341 ILVA----TDLVGRGIDIER-VNIVINYDMPD 367 (423)
Q Consensus 341 ili~----T~~~~~Gld~~~-~~~vi~~~~~~ 367 (423)
|||+ |++++||||+|+ +++||||+.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 689999999999 89999999886
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.1e-39 Score=313.04 Aligned_cols=308 Identities=19% Similarity=0.219 Sum_probs=222.0
Q ss_pred hhhhhcccccccCCceEEEccCCCcchhHHH---------HHHhhcc---CCCCCCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFV---------LSTLQQT---EPNPGQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 71 ~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~---------~~~~~~~---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
.+|+++++.++.++++++.|+||||||.+.. ++.+..+ .......++++++|+++||.|+..++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999732 2233322 223334589999999999999999988765
Q ss_pred cc--CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHH
Q 014486 139 TY--LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216 (423)
Q Consensus 139 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~ 216 (423)
.. ..+..+...+||.......... .. .+++++|+... ...+.++++||+||||++.... ..+..+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~-k~-~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---DllL~ll 314 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNP-KP-YGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DIIIAVA 314 (675)
T ss_pred CccccCCceEEEEECCcchHHhhccc-CC-CCEEEEeCccc-------ccccccCCEEEccccccCccch---hHHHHHH
Confidence 44 3456788889987632111111 23 58999997521 1246789999999999986532 2333333
Q ss_pred HhC-CCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC----------hHHHHHHHHHHHHh
Q 014486 217 KMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS----------ELEKNRKLNDLLDA 285 (423)
Q Consensus 217 ~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~ll~~ 285 (423)
+.. +..+|+++||||++.+...+ ..++.++..+.+... ....+.+.+.... ...+...+..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 332 33458999999999887665 567777766655432 1122233332211 11222222222222
Q ss_pred --hcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhh-hcCCccEEEEcCccccCCCCCCCCEE
Q 014486 286 --LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGF-KEGNKRILVATDLVGRGIDIERVNIV 360 (423)
Q Consensus 286 --~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~ili~T~~~~~Gld~~~~~~v 360 (423)
..++++|||+++..+++.+.+.|.+. ++.+..+||++++. .+.+++| ++|+.+|||||+++++|+|+|++++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 13468999999999999999999987 68999999999975 4556777 68999999999999999999999999
Q ss_pred EEcc---CCC---------CcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 361 INYD---MPD---------SADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 361 i~~~---~~~---------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
|+++ .|. |.+.|.||+||+||. ++|.|+.+++....
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 9998 454 777899999999999 78999999987554
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2e-39 Score=310.28 Aligned_cols=307 Identities=18% Similarity=0.187 Sum_probs=218.8
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
..|+++|.++++.++.++++++.+|||+|||+++...+...... . ..++||++|+++|+.||.+.++++... +...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-~-~~~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-Y-EGKVLIIVPTTSLVTQMIDDFVDYRLF-PREAM 189 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECcHHHHHHHHHHHHHhccc-cccce
Confidence 48999999999999999999999999999999765432221222 2 238999999999999999999988643 23344
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
..+.+|.... ...+|+|+|++++.+... ..+.++++||+||||++.. ..+..++..+++.++++
T Consensus 190 ~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~-----~~~~~il~~~~~~~~~l 253 (501)
T PHA02558 190 HKIYSGTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG-----KSLTSIITKLDNCKFKF 253 (501)
T ss_pred eEEecCcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc-----hhHHHHHHhhhccceEE
Confidence 4455554321 125999999999876432 2467899999999998865 23456666666678899
Q ss_pred EEeccCCccHHHH--HHHhccCCceeeecccc-----c---------------cccccce-EEE-----EEeChHHHHHH
Q 014486 227 MFSATLSKEIRPV--CKKFMQDPMEIYVDDEA-----K---------------LTLHGLV-QHY-----IKLSELEKNRK 278 (423)
Q Consensus 227 ~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~-----~---------------~~~~~~~-~~~-----~~~~~~~~~~~ 278 (423)
++|||++...... ....++. ....+.... . ....... ..+ .......+...
T Consensus 254 GLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 254 GLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 9999997543211 1111211 111100000 0 0000000 000 00112223344
Q ss_pred HHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc-CccccCCCCC
Q 014486 279 LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIE 355 (423)
Q Consensus 279 l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T-~~~~~Gld~~ 355 (423)
+..++... .+.+++|||.+.++++.+++.|.+.+.++..+||+++..+|..+++.|++|+..||||| +.+++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 44444332 35789999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEec
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
++++||++.++.|...|+||+||++|.+..+....+++
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 99999999999999999999999999876554444443
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.8e-39 Score=288.08 Aligned_cols=340 Identities=21% Similarity=0.242 Sum_probs=265.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
.+....+++.+++.+..-|+..|++.+.|.|..++.+ ++.|.|.++..+|+||||++.-++-+..+..+++ +-|+++
T Consensus 191 ~~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLv 268 (830)
T COG1202 191 VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLV 268 (830)
T ss_pred cccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEe
Confidence 3445577899999999999999999999999999976 5668999999999999999998888888776554 889999
Q ss_pred cChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcC
Q 014486 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 198 (423)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE 198 (423)
|..+||.|-++.|++-.... ++++..-.|...+..... .-.....||||+|++-+..+++.+ ..+.+++.||+||
T Consensus 269 PLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999998766555 778877777655443322 112244699999999999888876 6789999999999
Q ss_pred cchhhcc-CC--cHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe-ChHH
Q 014486 199 CDKMLES-LD--MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELE 274 (423)
Q Consensus 199 ~h~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 274 (423)
+|.+.+. .+ .-..+.++. .+-+..|+|.+|||..+. ..+++.+......+...+. .+..+.+.. .+.+
T Consensus 347 iHtL~deERG~RLdGLI~RLr-~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV------plErHlvf~~~e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLR-YLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV------PLERHLVFARNESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHH-HhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC------ChhHeeeeecCchH
Confidence 9998762 12 222334443 444589999999999765 3455555544443322221 123333333 4778
Q ss_pred HHHHHHHHHHhh--------cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC
Q 014486 275 KNRKLNDLLDAL--------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (423)
Q Consensus 275 ~~~~l~~ll~~~--------~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~ 346 (423)
|...+..+.+.. -.+++|||++++..+..++..|...|+++.+||++++..+|..+...|.++++.++|+|.
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 888888887554 237899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEE----ccCC-CCcchhhhcccccCCCC--CceEEEEEecCc
Q 014486 347 LVGRGIDIERVNIVIN----YDMP-DSADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (423)
Q Consensus 347 ~~~~Gld~~~~~~vi~----~~~~-~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 395 (423)
+++.|+|+|.-. ||+ .+.- -|+.+|.|+.|||||.+ ..|.|++++.+.
T Consensus 499 AL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999544 443 2222 38999999999999976 458888887653
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.6e-38 Score=314.88 Aligned_cols=301 Identities=19% Similarity=0.265 Sum_probs=227.2
Q ss_pred hcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 014486 75 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 154 (423)
Q Consensus 75 ~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (423)
+.+..+..++++++.||||||||+++.+++++..... .+++|++|++++|.|+++++.+......+..+.+..++.+
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~---~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN---GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC---CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 4455666788999999999999999999999765432 2899999999999999999866544433567776666543
Q ss_pred hHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcH-HHHHHHHHhCCCCceEEEEeccCC
Q 014486 155 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 155 ~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~-~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
.. +...+|+|+|++.|.+++.. ...++++++||+||+|...-..++. ..+..+...++++.|+++||||++
T Consensus 89 ~~-------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 89 KV-------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred cc-------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 21 11248999999999998875 4578999999999999742213332 234455666778899999999998
Q ss_pred ccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHH-----HHHHHHHhhcCCcEEEEEcChhhHHHHHHHH
Q 014486 234 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-----KLNDLLDALDFNQVVIFVKSVSRAAELNKLL 308 (423)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L 308 (423)
.. .+..++.++..+...... ..+..++.......+.. .+..++.. ..+.+|||+++..+++.+++.|
T Consensus 161 ~~---~l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L 232 (812)
T PRK11664 161 ND---RLQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQL 232 (812)
T ss_pred HH---HHHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 64 234555544444332211 11333444333333322 23333332 3588999999999999999999
Q ss_pred Hh---CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCC-----------------
Q 014486 309 VE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS----------------- 368 (423)
Q Consensus 309 ~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s----------------- 368 (423)
.+ .++.+..+||+++..+|..++..|.+|+.+|||||+++++|+|++++++||+++.++.
T Consensus 233 ~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 233 ASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred HHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 87 5788899999999999999999999999999999999999999999999999887753
Q ss_pred -cchhhhcccccCCCCCceEEEEEecCc
Q 014486 369 -ADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 369 -~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
..++.||.||+||. ++|.|+.+++..
T Consensus 313 Skasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred chhhhhhhccccCCC-CCcEEEEecCHH
Confidence 34799999999999 689999999854
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.3e-38 Score=312.99 Aligned_cols=300 Identities=19% Similarity=0.248 Sum_probs=225.7
Q ss_pred hcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 014486 75 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 154 (423)
Q Consensus 75 ~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (423)
+.+..+..+++++++|+||||||+++.+++++.... +.+++|+.|++++|.|+++++.+......+..+++...+.+
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 444556667889999999999999999999987632 23899999999999999999865543333555655544432
Q ss_pred hHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch-hhccCCcHH-HHHHHHHhCCCCceEEEEeccC
Q 014486 155 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRR-DVQEIFKMTPHDKQVMMFSATL 232 (423)
Q Consensus 155 ~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~~v~~SAT~ 232 (423)
.... ..+|+|+|++.|++.+.. ...+.++++||+||+|. .++ .++.. .+..+...++++.|+++||||+
T Consensus 86 ------~~s~-~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~-~Dl~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 ------KVSR-RTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLD-ADLGLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ------ccCC-CCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhc-cchHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 1122 259999999999998876 45789999999999995 444 45443 3345666678889999999999
Q ss_pred CccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHH-----HHHHHHHHhhcCCcEEEEEcChhhHHHHHHH
Q 014486 233 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-----RKLNDLLDALDFNQVVIFVKSVSRAAELNKL 307 (423)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~ 307 (423)
+... +..++.++..+...... ..+..++......++. ..+..++.. ..+++|||+++..+++.+++.
T Consensus 157 ~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 157 DGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 9653 34555544444332211 1122333333322221 223333333 357899999999999999999
Q ss_pred HHh---CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCC----------------
Q 014486 308 LVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS---------------- 368 (423)
Q Consensus 308 L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s---------------- 368 (423)
|.+ .++.+..+||++++.+|..+++.|.+|..+|||||+++++|||+|++++||+++.|+.
T Consensus 229 L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 308 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVR 308 (819)
T ss_pred HHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEE
Confidence 987 4788999999999999999999999999999999999999999999999999998863
Q ss_pred --cchhhhcccccCCCCCceEEEEEecCc
Q 014486 369 --ADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 369 --~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
..++.||.||+||. ++|.|+.+++..
T Consensus 309 iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 309 ISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred ECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 23489999999999 799999999853
No 61
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.9e-38 Score=329.16 Aligned_cols=319 Identities=18% Similarity=0.235 Sum_probs=242.5
Q ss_pred HHHHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 57 LLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 57 ~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
..+.+++ .|| .|+++|+.+++.+++|+++++.+|||+|||+.++++++.... .+.+++|++||++|+.|+++.++
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHH
Confidence 4455665 699 699999999999999999999999999999966555544432 22389999999999999999999
Q ss_pred HHhccCC-CceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc------
Q 014486 136 RFSTYLP-DIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------ 205 (423)
Q Consensus 136 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~------ 205 (423)
.+..... ++.+..++|+.+...+. ..+.++.++|+|+||+.+...+... ...+++++|+||||+++.+
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~ 221 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDR 221 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccch
Confidence 9876542 46778888988776553 3455666899999999988765532 1267899999999999753
Q ss_pred ----CCcHHHHHH----HHH----------------------hCCCCce-EEEEeccCCccHHHHHHHhccCCceeeecc
Q 014486 206 ----LDMRRDVQE----IFK----------------------MTPHDKQ-VMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 206 ----~~~~~~~~~----~~~----------------------~~~~~~~-~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
.+|...+.. +.. .+++..| .+++|||+++... . ..++..+..+.+..
T Consensus 222 ~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~~l~f~v~~ 299 (1638)
T PRK14701 222 SLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRELLGFEVGS 299 (1638)
T ss_pred hhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhcCeEEEecC
Confidence 367766653 221 2244455 5779999986411 1 12334444444433
Q ss_pred ccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhh---HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHH
Q 014486 255 EAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRY 331 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~---~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 331 (423)
. ......+.+.++......+ ..+..+++.. +..+||||++.+. ++.+++.|...|+++..+|++ |...+
T Consensus 300 ~-~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 300 G-RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred C-CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 3 2344556666665554444 4677777766 4689999999875 589999999999999999995 88899
Q ss_pred HhhhcCCccEEEEc----CccccCCCCCC-CCEEEEccCCC---Ccchhhhcc-------------cccCCCCCceEEEE
Q 014486 332 KGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMPD---SADTYLHRV-------------GRAGRFGTKGLAIT 390 (423)
Q Consensus 332 ~~f~~~~~~ili~T----~~~~~Gld~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~~~~~~ 390 (423)
+.|++|+++||||| ++++||||+|+ +++||||+.|+ +...|.|.. ||++|.|.+..++.
T Consensus 372 ~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 451 (1638)
T PRK14701 372 DLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVL 451 (1638)
T ss_pred HHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHH
Confidence 99999999999999 48999999998 99999999999 887776665 99999998877764
Q ss_pred E
Q 014486 391 F 391 (423)
Q Consensus 391 ~ 391 (423)
.
T Consensus 452 ~ 452 (1638)
T PRK14701 452 D 452 (1638)
T ss_pred H
Confidence 3
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.3e-38 Score=298.47 Aligned_cols=316 Identities=20% Similarity=0.203 Sum_probs=241.6
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|+++|..+++.++.|+ |..+.||+|||+++++|++.....+ +.++|++|++.||.|.++++..+.... ++
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G---~~v~VvTptreLA~qdae~~~~l~~~l-Gl 173 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG---LPVHVITVNDYLAERDAELMRPLYEAL-GL 173 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC---CeEEEEcCcHHHHHHHHHHHHHHHhhc-CC
Confidence 44 79999999999999998 9999999999999999999876644 389999999999999999999998877 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCCC-------------------------CCCCccEEEEcC
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDL-------------------------SLKNVRHFILDE 198 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~~-------------------------~~~~~~~vVvDE 198 (423)
++.++.|+.+.. .+....+ ++|+|+|...| +++++.+.. -...+.++||||
T Consensus 174 sv~~i~gg~~~~--~r~~~y~-~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDE 250 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYG-ADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDE 250 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcC-CCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeec
Confidence 999999997643 2233334 49999999877 444443311 135578999999
Q ss_pred cchhhcc--------------C---CcHHHHHHHHHhCCC----------------------------------------
Q 014486 199 CDKMLES--------------L---DMRRDVQEIFKMTPH---------------------------------------- 221 (423)
Q Consensus 199 ~h~~~~~--------------~---~~~~~~~~~~~~~~~---------------------------------------- 221 (423)
+|.++-+ . .+......+...+..
T Consensus 251 vDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~ 330 (656)
T PRK12898 251 ADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRR 330 (656)
T ss_pred ccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHH
Confidence 9987611 0 011111111110000
Q ss_pred ----------------Cc-------------------------------------------------------------e
Q 014486 222 ----------------DK-------------------------------------------------------------Q 224 (423)
Q Consensus 222 ----------------~~-------------------------------------------------------------~ 224 (423)
+. +
T Consensus 331 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~k 410 (656)
T PRK12898 331 EELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLR 410 (656)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHH
Confidence 00 5
Q ss_pred EEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhc--CCcEEEEEcChhhHH
Q 014486 225 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD--FNQVVIFVKSVSRAA 302 (423)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~ivf~~~~~~~~ 302 (423)
+.+||||.+.....+.+.+...+..+....+.. ......++.....+|...+.+++.... +.++||||++++.++
T Consensus 411 l~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~---r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 411 LAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQ---RRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HhcccCcChHHHHHHHHHHCCCeEEeCCCCCcc---ceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 678999998877777777776665554443332 222333455667788888888887643 578999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC---CCC-----EEEEccCCCCcchhhh
Q 014486 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLH 374 (423)
Q Consensus 303 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q 374 (423)
.+++.|...|+++..+|+..+ +++..+..|..+...|+|||++++||+|++ ++. +||+++.|.|...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999999999999999865 444555566666678999999999999999 665 9999999999999999
Q ss_pred cccccCCCCCceEEEEEecCc
Q 014486 375 RVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 375 ~~GR~~R~g~~~~~~~~~~~~ 395 (423)
|+||+||.|.+|.++.|++..
T Consensus 566 r~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hcccccCCCCCeEEEEEechh
Confidence 999999999999999999863
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=308.97 Aligned_cols=341 Identities=23% Similarity=0.304 Sum_probs=246.5
Q ss_pred CCCHHHHHHHHhCCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 52 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
.+.+.+.+-+...++..+++.|+.++...+.+ +|++|++|||||||+++++.++..+...+. +++|+||+++||.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~--k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGG--KVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCC--cEEEEeChHHHHHHH
Confidence 36677888888888889999999998877765 899999999999999999999998887632 899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 131 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
+++++++... ++++...+|+.....+ .+. . ++|+|+||+++..+.++......++++||+||+|.+.+. .-.+
T Consensus 93 ~~~~~~~~~~--GirV~~~TgD~~~~~~--~l~-~-~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~-~RG~ 165 (766)
T COG1204 93 YEEFSRLEEL--GIRVGISTGDYDLDDE--RLA-R-YDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR-TRGP 165 (766)
T ss_pred HHHhhhHHhc--CCEEEEecCCcccchh--hhc-c-CCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc-ccCc
Confidence 9999944333 8999999998775442 222 2 599999999999999988878889999999999998763 2222
Q ss_pred HHHHH---HHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH-------HHHHHHH
Q 014486 211 DVQEI---FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-------EKNRKLN 280 (423)
Q Consensus 211 ~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~ 280 (423)
.+..+ ........|++++|||+|+. ..++.....++......+..-.........+...... .....+.
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 22222 33334458999999999975 3344444333332122211111111112222222211 1223333
Q ss_pred HHHHhh-cCCcEEEEEcChhhHHHHHHHHHhC-------------------------------------CCCeEEEcCCC
Q 014486 281 DLLDAL-DFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIHSGM 322 (423)
Q Consensus 281 ~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~ 322 (423)
..+... .+++++|||++++.+...++.+... ...+..+|.++
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 333333 4579999999999998888888730 01345679999
Q ss_pred CHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE----Ecc-----CCCCcchhhhcccccCCCCC--ceEEEEE
Q 014486 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----NYD-----MPDSADTYLHRVGRAGRFGT--KGLAITF 391 (423)
Q Consensus 323 ~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g~--~~~~~~~ 391 (423)
+..+|..+.+.|+.|.++||+||+.++.|+|+|.-+.|| .|+ .+-++.++.|+.|||||.|- .|.++++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEE
Confidence 999999999999999999999999999999999666665 355 34567889999999999874 4777777
Q ss_pred ecCcccHHHHH
Q 014486 392 VSSASDSDILN 402 (423)
Q Consensus 392 ~~~~~~~~~~~ 402 (423)
....++..+..
T Consensus 405 ~~~~~~~~~~~ 415 (766)
T COG1204 405 ATSHDELEYLA 415 (766)
T ss_pred ecCccchhHHH
Confidence 74444444333
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.2e-38 Score=290.79 Aligned_cols=298 Identities=20% Similarity=0.258 Sum_probs=202.5
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHH-------
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI------- 157 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 157 (423)
++++.+|||||||.+++++++..+... ...+++|++|+++|+.|+++.+..+... ++..++++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCc
Confidence 478999999999999999999876543 3348999999999999999999987532 3444444332110
Q ss_pred -----HHHHH-hc----CCCcEEEechHHHHHHHhcCCC----CC--CCccEEEEcCcchhhccCCcHHHHHHHHHhC-C
Q 014486 158 -----HKDLL-KN----ECPQIVVGTPGRILALARDKDL----SL--KNVRHFILDECDKMLESLDMRRDVQEIFKMT-P 220 (423)
Q Consensus 158 -----~~~~~-~~----~~~~ilv~T~~~l~~~~~~~~~----~~--~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~ 220 (423)
..... .+ ...+|+++||+.+...+..... .+ -..++||+||+|.+.. ..+.. +..++..+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~-~~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDE-YTLAL-ILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCH-HHHHH-HHHHHHHHHH
Confidence 00000 00 1247999999999886654211 11 1237899999999876 22222 44444433 3
Q ss_pred CCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEE--EeChHHHHHHHHHHHHhh-cCCcEEEEEcC
Q 014486 221 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--KLSELEKNRKLNDLLDAL-DFNQVVIFVKS 297 (423)
Q Consensus 221 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~~-~~~~~ivf~~~ 297 (423)
...|++++|||+|..+..++......+........... ....+.+. ......+...+..+++.. .++++||||++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER--RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc--ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 46899999999997766665544332111111110000 00011111 111123344555555443 46899999999
Q ss_pred hhhHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHH----HHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcch
Q 014486 298 VSRAAELNKLLVECNF--PSICIHSGMSQEERLTR----YKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371 (423)
Q Consensus 298 ~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~ 371 (423)
+++++.+++.|++.+. .+..+||++++.+|... ++.|++++.++||||+++++|+|++ +++||++..| +..
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999988765 48899999999999764 8899999999999999999999996 7888887655 789
Q ss_pred hhhcccccCCCCCc----eEEEEEecC
Q 014486 372 YLHRVGRAGRFGTK----GLAITFVSS 394 (423)
Q Consensus 372 ~~Q~~GR~~R~g~~----~~~~~~~~~ 394 (423)
|+||+||+||.|+. |.++++...
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeec
Confidence 99999999998854 356666543
No 65
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6e-37 Score=310.63 Aligned_cols=324 Identities=21% Similarity=0.310 Sum_probs=236.7
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
+..++++||+.++..++.+ ++++++|||+|||+++++++...+.. . +.++||++|+++|+.|+.+.++++.... ..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-~-~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~ 87 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-K-GGKVLILAPTKPLVEQHAEFFRKFLNIP-EE 87 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-C-CCeEEEEeCcHHHHHHHHHHHHHHhCCC-Cc
Confidence 3447899999999887776 89999999999999998888776632 2 2389999999999999999999876432 45
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCce
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 224 (423)
++..++|+.........+.+ .+|+|+||+.+...+....+.+.++++||+||||++.+... ...+...+....+.++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~-~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEK--AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYA-YVYIAERYHEDAKNPL 164 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccccc-HHHHHHHHHhcCCCCE
Confidence 78888888776554444433 49999999999887777777889999999999999876333 3344444445556778
Q ss_pred EEEEeccCCccHHH---HHHHhccCCcee--------------------ee-----------------------------
Q 014486 225 VMMFSATLSKEIRP---VCKKFMQDPMEI--------------------YV----------------------------- 252 (423)
Q Consensus 225 ~v~~SAT~~~~~~~---~~~~~~~~~~~~--------------------~~----------------------------- 252 (423)
++++||||...... .+.........+ .+
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999998433211 111111000000 00
Q ss_pred ccccc--cc-----------cccceE------------------------------------------EE----------
Q 014486 253 DDEAK--LT-----------LHGLVQ------------------------------------------HY---------- 267 (423)
Q Consensus 253 ~~~~~--~~-----------~~~~~~------------------------------------------~~---------- 267 (423)
..... .. ...+.. ..
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00000 00 000000 00
Q ss_pred ----------------EEeChHHHHHHHHHHHHh----hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCC------
Q 014486 268 ----------------IKLSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG------ 321 (423)
Q Consensus 268 ----------------~~~~~~~~~~~l~~ll~~----~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~------ 321 (423)
.......|...+.+++.. .+.+++||||++...+..+.+.|...++++..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 000112244445555544 456899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 322 --MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 322 --~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
+++.+|.+++..|++|+.++||+|+++++|+|+|++++||+|++|+++..|+||+||+||.|. |.+++++....
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999876 66777766433
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=306.82 Aligned_cols=336 Identities=25% Similarity=0.359 Sum_probs=260.2
Q ss_pred CHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHH
Q 014486 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (423)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (423)
...+..++.+.|...|++||.+|+..+..|++++|..+||||||.+|++|+++.+...+.. ++|+|.|+++||..+.++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445788999999999999999999999999999999999999999999999999887766 899999999999999999
Q ss_pred HHHHhccCC-CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHH-hcC---CCCCCCccEEEEcCcchhhccC--
Q 014486 134 FERFSTYLP-DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDK---DLSLKNVRHFILDECDKMLESL-- 206 (423)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~-~~~---~~~~~~~~~vVvDE~h~~~~~~-- 206 (423)
++++....+ .+++..++|+....+....+.+. |+|+++||++|..++ ... .+.+.++++||+||+|..-.-.
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~p-p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNP-PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCC-CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 999998886 68888999988777665555554 799999999998744 322 2346779999999999876521
Q ss_pred CcH---HHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC------h---HH
Q 014486 207 DMR---RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS------E---LE 274 (423)
Q Consensus 207 ~~~---~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~ 274 (423)
+.. +.+..+.+..+...|+|++|||+.... .+...+........+...... ..........+ . ..
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~--~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSP--RGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCC--CCceEEEEeCCcchhhhhhcccc
Confidence 222 334444455566889999999998764 445555555544432222211 11112222222 0 12
Q ss_pred HHHHHHHHHHhh--cCCcEEEEEcChhhHHHHH----HHHHhCC----CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEE
Q 014486 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELN----KLLVECN----FPSICIHSGMSQEERLTRYKGFKEGNKRILVA 344 (423)
Q Consensus 275 ~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~ 344 (423)
.......+.... ++-++|+|+.+++.++.+. ..+...+ ..+..+++++.+.+|.++...|+.|+..++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s 370 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA 370 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEec
Confidence 222333333222 4578999999999999986 4444445 56778999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEccCCC-CcchhhhcccccCCCCCceEEEEEecC
Q 014486 345 TDLVGRGIDIERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 345 T~~~~~Gld~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
|++++-|+|+.+++.||..+.|. +..++.|+.||+||.++.+.++++...
T Consensus 371 t~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 371 TNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred chhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 99999999999999999999999 899999999999999988888777764
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-36 Score=309.77 Aligned_cols=293 Identities=17% Similarity=0.290 Sum_probs=213.1
Q ss_pred HHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 57 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
..+.+.+.....|+++|+.+++.++.|+++++.+|||+|||. +.++++..+... +++++|++||++||.|+++.++.
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHHH
Confidence 334444444448999999999999999999999999999997 445555444322 34899999999999999999999
Q ss_pred HhccCCCce---EEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc-----
Q 014486 137 FSTYLPDIK---VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----- 205 (423)
Q Consensus 137 ~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~----- 205 (423)
+.... ++. +..++|+.+...+. ..+.++.++|+|+||++|...+.... . +++++|+||||+++.+
T Consensus 144 l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 144 LAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHH
Confidence 88654 443 33577887765543 34555668999999999988766421 2 8899999999999863
Q ss_pred -----CCcHHH-HHHHH----------------------HhCCCCce--EEEEecc-CCccHHHHHHHhccCCceeeecc
Q 014486 206 -----LDMRRD-VQEIF----------------------KMTPHDKQ--VMMFSAT-LSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 206 -----~~~~~~-~~~~~----------------------~~~~~~~~--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
.+|... +..++ ..+++..| ++++||| .|..... .++.....+.+..
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC
Confidence 345442 33322 23344444 5678999 5655432 2233333333332
Q ss_pred ccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcCh---hhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHH
Q 014486 255 EAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV---SRAAELNKLLVECNFPSICIHSGMSQEERLTRY 331 (423)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 331 (423)
. ......+.+.+..... +...+..+++... .++||||++. +.++.+++.|.+.|+++..+||+++. .++
T Consensus 297 ~-~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 297 G-SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDY 368 (1171)
T ss_pred c-cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHH
Confidence 2 2234455555554433 2345667776654 6799999999 99999999999999999999999973 679
Q ss_pred HhhhcCCccEEEE----cCccccCCCCCC-CCEEEEccCCC
Q 014486 332 KGFKEGNKRILVA----TDLVGRGIDIER-VNIVINYDMPD 367 (423)
Q Consensus 332 ~~f~~~~~~ili~----T~~~~~Gld~~~-~~~vi~~~~~~ 367 (423)
+.|++|+++|||| |++++||||+|+ +++||+|+.|.
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999999 489999999999 89999988764
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-37 Score=305.29 Aligned_cols=335 Identities=19% Similarity=0.214 Sum_probs=256.3
Q ss_pred HHHHHH-hCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 57 LLRAIV-DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 57 ~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
+...+. ..|...+++-|.++|..++.|++.++.+|||.||+++|.+|++..-. .+|||.|..+|++.+...+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhhh
Confidence 333333 45999999999999999999999999999999999999888776544 78999999999887765553
Q ss_pred HHhccCCCceEEEEEcCcchHHHH---HHHhcC--CCcEEEechHHHHH--HHhcCCCCCCC---ccEEEEcCcchhhcc
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHK---DLLKNE--CPQIVVGTPGRILA--LARDKDLSLKN---VRHFILDECDKMLES 205 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~ilv~T~~~l~~--~~~~~~~~~~~---~~~vVvDE~h~~~~~ 205 (423)
. .++....+.++....++. ..+.++ ..+|++.||+++.. .+......+.. +.++|+||||+...|
T Consensus 326 ~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 326 K-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred h-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 2 278888888888775443 344455 67999999998865 12222223333 778999999999988
Q ss_pred -CCcHHHHHHHHHhCC--CCceEEEEeccCCccHHHHHHHhccCCc-eeeeccccccccccceEEEEEeChHHHHH-HHH
Q 014486 206 -LDMRRDVQEIFKMTP--HDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLSELEKNR-KLN 280 (423)
Q Consensus 206 -~~~~~~~~~~~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 280 (423)
++|++.+..+..... +..+++++|||.+..+...+-..+.-.. .+..... ...++...+..-....... .+.
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf---nR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF---NRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC---CCCCceEEEEeccCccchHHHHH
Confidence 788888777644332 2468999999998887765555444222 2222111 1222222222212122222 333
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEE
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~v 360 (423)
..-...+....||||.++..++.+...|+..+..+..||++|+..+|..+.+.|..++++|++||=++++|+|.|+++.|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 33344567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHH
Q 014486 361 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVS 405 (423)
Q Consensus 361 i~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 405 (423)
|||..|+|++.|.|.+|||||.|....|++|++..+...+.-.|.
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999999999875555444443
No 69
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.9e-37 Score=296.67 Aligned_cols=317 Identities=20% Similarity=0.249 Sum_probs=236.5
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|+++|..+.+.+..|+ |..+.||+|||+++++|++.....+. .++|++|++.||.|.++.+..+.... ++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFL-GL 148 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 55 89999999988888775 99999999999999999986666443 78999999999999999999999887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCcchhhcc------------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~~~~~vVvDE~h~~~~~------------ 205 (423)
+++++.|+.+...+.+.... ++|+++||+.+ ++++.... ..+..+.++|+||||+++-+
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~--~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYE--ADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcC--CCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 99999999884333333333 59999999988 44444332 34578899999999988621
Q ss_pred ---CCcHHHHHHHHHhCCCC--------c---------------------------------------------------
Q 014486 206 ---LDMRRDVQEIFKMTPHD--------K--------------------------------------------------- 223 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~--------~--------------------------------------------------- 223 (423)
.........+...+... .
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 00111111111111100 0
Q ss_pred ----------------------------------------------------------eEEEEeccCCccHHHHHHHhcc
Q 014486 224 ----------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQ 245 (423)
Q Consensus 224 ----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~ 245 (423)
++.+||+|...+...+.+.+..
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l 386 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNM 386 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCC
Confidence 4566777765544444333322
Q ss_pred CCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
... .++...+..... ....+......|...+...+... .+.++||||++.+.++.++..|...|+++..+|+.+.
T Consensus 387 ~v~--~IPt~kp~~r~d-~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 387 EVV--QIPTNRPIIRID-YPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred cEE--ECCCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 222 222222212222 22233445667888887777653 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccEEEEcCccccCCCC---CCCC-----EEEEccCCCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDI---ERVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 324 ~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
+.++..+...+..| .|+|||++++||+|+ +++. +||++++|.|...|.||+||+||.|.+|.++.|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88888777776655 799999999999999 6898 9999999999999999999999999999999999863
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=9.6e-37 Score=287.52 Aligned_cols=319 Identities=21% Similarity=0.295 Sum_probs=226.5
Q ss_pred CCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
...+|.||.+.+...+ ++++||++|||+|||+++...++.++...+.+ ++++++|++.|+.|+...+..++.. ..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~-KiVF~aP~~pLv~QQ~a~~~~~~~~---~~ 134 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKG-KVVFLAPTRPLVNQQIACFSIYLIP---YS 134 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcc-eEEEeeCCchHHHHHHHHHhhccCc---cc
Confidence 4489999999998888 99999999999999999999899888877765 9999999999999998777766543 34
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC-CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCce
Q 014486 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS-LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~-~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 224 (423)
+....||.........+... .+|+|+||+.+.+-+...... ++.|.++||||||+......+...++.++.......|
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s-~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVAS-KRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred ceeeccCccCCCchhhhhcc-cceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcccc
Confidence 55555553322222233333 499999999999877665444 5999999999999998866777777777777666779
Q ss_pred EEEEeccCCccHHHHHHHh---ccCCceee--------------------------------------------------
Q 014486 225 VMMFSATLSKEIRPVCKKF---MQDPMEIY-------------------------------------------------- 251 (423)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~---~~~~~~~~-------------------------------------------------- 251 (423)
++++||||.+......... +.. ..+.
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999865433211110 000 0000
Q ss_pred -ecccc-----------ccccccc--eEE-------------------EEE-----------------------------
Q 014486 252 -VDDEA-----------KLTLHGL--VQH-------------------YIK----------------------------- 269 (423)
Q Consensus 252 -~~~~~-----------~~~~~~~--~~~-------------------~~~----------------------------- 269 (423)
..... ....... .++ -+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 00000 0000000 000 000
Q ss_pred ----------------e--ChHHHHHHHHHHHH----hhcCCcEEEEEcChhhHHHHHHHHHh---CCCCeEEE------
Q 014486 270 ----------------L--SELEKNRKLNDLLD----ALDFNQVVIFVKSVSRAAELNKLLVE---CNFPSICI------ 318 (423)
Q Consensus 270 ----------------~--~~~~~~~~l~~ll~----~~~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~------ 318 (423)
. .+..|...+.+++. ..+..++|||+.+++.|..+.+.|.+ .++++..+
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 0 00111222222221 12445799999999999999999884 23343333
Q ss_pred --cCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEec
Q 014486 319 --HSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 319 --~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
..+|++.++.++++.|++|+++|||||+++++|+|++.|+.||.||...++..++||.|| ||+. .|.++++++
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t 527 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTT 527 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEc
Confidence 248999999999999999999999999999999999999999999999999999999999 9984 467777776
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.3e-36 Score=290.59 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=228.9
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.++|+|.+++..+..++..++.++||+|||+++++|++.....+. .++|++|++.||.|+++++..+...+ ++++.
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~ 143 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVS 143 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEE
Confidence 345555555555555555899999999999999999877665443 68999999999999999999998887 88988
Q ss_pred EEEcCcc---hHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCcchhhcc------------
Q 014486 148 VFYGGVN---IKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 148 ~~~~~~~---~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~------~~~~~~~~~vVvDE~h~~~~~------------ 205 (423)
...++.. .....+....+ ++|+++||+.| ++++... ...+..+.++|+||||.++.+
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~-~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYN-SDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEECCCCccccCHHHHHHhCC-CCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 8776532 22222333334 59999999999 4555322 234678999999999998621
Q ss_pred ---CCcHHHHHHHHHhCCCC------------------------------------------------------------
Q 014486 206 ---LDMRRDVQEIFKMTPHD------------------------------------------------------------ 222 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~------------------------------------------------------------ 222 (423)
.........+.+.+...
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYi 302 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYV 302 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 00111111111111110
Q ss_pred ---------------------------------------------------------ceEEEEeccCCccHHHHHHHhcc
Q 014486 223 ---------------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQ 245 (423)
Q Consensus 223 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 245 (423)
.++.+||+|...+...+.+.+..
T Consensus 303 V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l 382 (762)
T TIGR03714 303 VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL 382 (762)
T ss_pred EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC
Confidence 04667777765555555443332
Q ss_pred CCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
.. +.++...+..... ....+......|...+...+.. ..+.++||||++++.++.+...|...|+++..+|+.+.
T Consensus 383 ~v--~~IPt~kp~~r~d-~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 383 SV--VKIPTNKPIIRID-YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CE--EEcCCCCCeeeee-CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 22 2222222222222 2223445667788878777755 35689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccEEEEcCccccCCCCC---------CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecC
Q 014486 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIE---------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 324 ~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
+.++..+..+++.| .|+|||++++||+|++ ++.+|+++++|..... .||.||+||.|.+|.++.|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 88887777766655 7999999999999999 8999999999987666 9999999999999999999986
Q ss_pred ccc
Q 014486 395 ASD 397 (423)
Q Consensus 395 ~~~ 397 (423)
.++
T Consensus 537 eD~ 539 (762)
T TIGR03714 537 EDD 539 (762)
T ss_pred chh
Confidence 433
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-36 Score=290.47 Aligned_cols=307 Identities=18% Similarity=0.183 Sum_probs=211.2
Q ss_pred CCCChhhhhccccccc-C--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 67 EHPSEVQHECIPQAIL-G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~-~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
..+||||.+++..+.. + +++++++|||+|||++.+..+.... .++|||||+..|+.||.+++.++... +.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~------k~tLILvps~~Lv~QW~~ef~~~~~l-~~ 326 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVK------KSCLVLCTSAVSVEQWKQQFKMWSTI-DD 326 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHHHHHHhcCC-CC
Confidence 3789999999999885 3 3689999999999999876554432 17899999999999999999998643 24
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--------CCCCCCccEEEEcCcchhhccCCcHHHHHHH
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--------DLSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--------~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~ 215 (423)
..+..++|+.... . .+...|+|+|++++.....+. .+.-..+++||+||||++.. ..++.+
T Consensus 327 ~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~i 395 (732)
T TIGR00603 327 SQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRV 395 (732)
T ss_pred ceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHH
Confidence 4666677653221 1 122489999999876432211 12234688999999998743 334445
Q ss_pred HHhCCCCceEEEEeccCCccHHH--HHHHhccCCceeeeccccccc---cccceEE-----------------------E
Q 014486 216 FKMTPHDKQVMMFSATLSKEIRP--VCKKFMQDPMEIYVDDEAKLT---LHGLVQH-----------------------Y 267 (423)
Q Consensus 216 ~~~~~~~~~~v~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------------------~ 267 (423)
...+. ....+++||||.+.-.. .+..+++ |..+......... ....... .
T Consensus 396 l~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 396 LTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 55543 34579999999753221 1222222 2111110000000 0000000 0
Q ss_pred EEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcC-CccEEEE
Q 014486 268 IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVA 344 (423)
Q Consensus 268 ~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~ili~ 344 (423)
.......|...+..+++.+ ++.++||||.+...+..+++.|. +..+||.+++.+|..+++.|+.+ .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 0111223445555566554 67899999999999998888773 45689999999999999999875 7899999
Q ss_pred cCccccCCCCCCCCEEEEccCC-CCcchhhhcccccCCCCCceEE-------EEEecCcccH
Q 014486 345 TDLVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLA-------ITFVSSASDS 398 (423)
Q Consensus 345 T~~~~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~~~~-------~~~~~~~~~~ 398 (423)
|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++.+...
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999999987 5999999999999998765553 6677654433
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.2e-36 Score=286.31 Aligned_cols=318 Identities=20% Similarity=0.240 Sum_probs=237.2
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|++.|..+...+..|+ +..++||+|||+++++|++.....+. .+.|++|+..||.|.++++..+.... ++
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~L-GL 126 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFL-GL 126 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccC-CC
Confidence 44 78899998888777665 99999999999999999964444332 68999999999999999999999887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCcchhhccCC----------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESLD---------- 207 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~------~~~~~~~~~vVvDE~h~~~~~~~---------- 207 (423)
++..+.|+.+.......+. ++|+++||..| +++++.+ ...+..++++|+||+|+++-+..
T Consensus 127 sv~~i~g~~~~~~r~~~y~---~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~ 203 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYA---CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPA 203 (745)
T ss_pred eEEEEeCCCCHHHHHHhcC---CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCC
Confidence 9999999988655444332 59999999999 8888765 24578899999999998863100
Q ss_pred -----cHHHHHHHHHhCCCC------------------------------------------------------------
Q 014486 208 -----MRRDVQEIFKMTPHD------------------------------------------------------------ 222 (423)
Q Consensus 208 -----~~~~~~~~~~~~~~~------------------------------------------------------------ 222 (423)
.......+.+.+...
T Consensus 204 ~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYi 283 (745)
T TIGR00963 204 EKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYI 283 (745)
T ss_pred CCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 000000111111000
Q ss_pred ---------------------------------------------------------ceEEEEeccCCccHHHHHHHhcc
Q 014486 223 ---------------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQ 245 (423)
Q Consensus 223 ---------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~ 245 (423)
.++.+||+|...+...+.+.+..
T Consensus 284 V~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 363 (745)
T TIGR00963 284 VRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNL 363 (745)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCC
Confidence 04566777766554444444433
Q ss_pred CCceeeeccccccccccceEEEEEeChHHHHHHHHHHHH--hhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD--ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
....+ +...+....... ..+.....+|...+.+.+. ...+.++||||++++.++.+++.|.+.|+++..+|+.
T Consensus 364 ~vv~I--Ptnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVV--PTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEe--CCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 33222 222221222212 2233345556666655552 2357899999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCccEEEEcCccccCCCCCC-------CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIER-------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 324 ~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
+.+|+..+..|..+...|+|||++++||+|++. ..+||+++.|.|...+.|+.||+||.|.+|.+..|++..+
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 778999999999999999999999999999998 5699999999999999999999999999999999998654
Q ss_pred c
Q 014486 397 D 397 (423)
Q Consensus 397 ~ 397 (423)
+
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 3
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.3e-35 Score=271.81 Aligned_cols=293 Identities=17% Similarity=0.174 Sum_probs=200.9
Q ss_pred hhhhcccccccCCc--eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccC---CCceE
Q 014486 72 VQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL---PDIKV 146 (423)
Q Consensus 72 ~Q~~~i~~~~~~~~--~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~~~ 146 (423)
||.++++.+..+.+ +++++|||+|||.+++++++... .++++++|+++|+.|+++.++++.... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998864 78999999999999999988532 268999999999999999999887443 24566
Q ss_pred EEEEcCcchH--HH-----------------HHHHhcCCCcEEEechHHHHHHHhcCC-----C---CCCCccEEEEcCc
Q 014486 147 AVFYGGVNIK--IH-----------------KDLLKNECPQIVVGTPGRILALARDKD-----L---SLKNVRHFILDEC 199 (423)
Q Consensus 147 ~~~~~~~~~~--~~-----------------~~~~~~~~~~ilv~T~~~l~~~~~~~~-----~---~~~~~~~vVvDE~ 199 (423)
..+.|..... .. ........+.|+++||+.|..++.... . .+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652211 00 111222357899999999976654321 1 2478999999999
Q ss_pred chhhccCC----cHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHh--ccCCceeeecc----c-------cc-----
Q 014486 200 DKMLESLD----MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF--MQDPMEIYVDD----E-------AK----- 257 (423)
Q Consensus 200 h~~~~~~~----~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~----~-------~~----- 257 (423)
|.+..+.. +......+........+++++|||+++.+...+... ...+....... . ..
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99864211 111233333333445789999999998877777654 33332111111 0 00
Q ss_pred -cccccceEEEEEeChHHHHHHHHHHHH-------hhcCCcEEEEEcChhhHHHHHHHHHhCC--CCeEEEcCCCCHHHH
Q 014486 258 -LTLHGLVQHYIKLSELEKNRKLNDLLD-------ALDFNQVVIFVKSVSRAAELNKLLVECN--FPSICIHSGMSQEER 327 (423)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~~~ivf~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~~~~r 327 (423)
...+.+...+.. ....+...+..+++ ..+++++||||++.+.++.+++.|++.+ +.+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 000122222222 22223333322222 2356799999999999999999999864 567889999999988
Q ss_pred HHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccC
Q 014486 328 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 380 (423)
Q Consensus 328 ~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 380 (423)
.+. ++.+|||||+++++|+|++.. +|| ++ |.++..|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 755 367999999999999999976 566 44 889999999999997
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.8e-37 Score=264.91 Aligned_cols=328 Identities=16% Similarity=0.251 Sum_probs=240.9
Q ss_pred HHHHHHHhC-CCCCC-Chhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHH
Q 014486 56 ELLRAIVDS-GFEHP-SEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (423)
Q Consensus 56 ~~~~~l~~~-~~~~~-~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (423)
.+.++|++. |+..+ ++.|.+++..+.. .+++.+++|||+||+++|.+|.+..-. .+||++|..+|...+.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g------ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG------ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC------eEEEehHHHHHHHHHHH
Confidence 456777764 66543 7899999988887 478999999999999999999887644 78999999999998888
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHH---h--cCCCcEEEechHHHHH-----HHhcCCCCCCCccEEEEcCcchh
Q 014486 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLL---K--NECPQIVVGTPGRILA-----LARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~ilv~T~~~l~~-----~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
-+.++ .+++..+.+..+..+..+.+ . +....+++.||+.-.. +++ ....-..+.++|+||||+.
T Consensus 80 HL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 80 HLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhH
Confidence 77665 34444444444444333322 1 2335799999986432 222 1223355789999999999
Q ss_pred hcc-CCcHHHHHHHHHh--CCCCceEEEEeccCCccHHHHHHH--hccCCceeeecccccccc--ccceEEEEEeChHHH
Q 014486 203 LES-LDMRRDVQEIFKM--TPHDKQVMMFSATLSKEIRPVCKK--FMQDPMEIYVDDEAKLTL--HGLVQHYIKLSELEK 275 (423)
Q Consensus 203 ~~~-~~~~~~~~~~~~~--~~~~~~~v~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 275 (423)
..| ++|++++.++-.. .-.+.+.+.+|||..+.+.+.+-. .+.+|.-++-.+.-..+. ......++ .+-
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I----~D~ 229 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI----TDC 229 (641)
T ss_pred hhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh----hhH
Confidence 987 7888887666432 223667999999999887765433 345665554333221110 00000000 111
Q ss_pred HHHHHHHHHhh-------------cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEE
Q 014486 276 NRKLNDLLDAL-------------DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342 (423)
Q Consensus 276 ~~~l~~ll~~~-------------~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~il 342 (423)
...|.++.... ..+-.||||.+++.+++++..|.-+|+++..||.++...+|.++.+.|.++++.|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 12233332221 11347999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHH
Q 014486 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399 (423)
Q Consensus 343 i~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 399 (423)
++|...++|+|-|++++||||++|.++.-|.|..||+||.|.+..|-++|+-.+...
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 999999999999999999999999999999999999999999999999998554443
No 76
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=5.9e-36 Score=256.74 Aligned_cols=338 Identities=20% Similarity=0.245 Sum_probs=259.1
Q ss_pred CCCCcCCCCCHHHHHHHHhC-CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 45 SSGFRDFLLKPELLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.+.-++|+++....+.|+.. ..+.+||.|..+|+..+.+.++++..|||.||+++|.+|++-.-. .+||++|.
T Consensus 70 awdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg------~alvi~pl 143 (695)
T KOG0353|consen 70 AWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADG------FALVICPL 143 (695)
T ss_pred ccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCC------ceEeechh
Confidence 34557899999988888765 777899999999999999999999999999999999999886644 78999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH---HH--hcCCCcEEEechHHHHH---HHh--cCCCCCCCccE
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LL--KNECPQIVVGTPGRILA---LAR--DKDLSLKNVRH 193 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~ilv~T~~~l~~---~~~--~~~~~~~~~~~ 193 (423)
..|++.+.-.++.+ ++....+..+.+.++-.. .+ .+....+++.||+.+.. ++. ...+....+++
T Consensus 144 islmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999888778776 455545544444333221 12 22456899999998754 111 12234566889
Q ss_pred EEEcCcchhhcc-CCcHHHHHHH--HHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe
Q 014486 194 FILDECDKMLES-LDMRRDVQEI--FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 270 (423)
Q Consensus 194 vVvDE~h~~~~~-~~~~~~~~~~--~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
|.+||+|+...| ++|++.+..+ +++.-+..+++++|||.+..+....+..+.....+.....- ..+++......-
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f--nr~nl~yev~qk 296 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF--NRPNLKYEVRQK 296 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc--CCCCceeEeeeC
Confidence 999999999887 6787765543 45545577899999999988877776655433333222211 112222222222
Q ss_pred C--hHHHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc
Q 014486 271 S--ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (423)
Q Consensus 271 ~--~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~ 347 (423)
+ +.+-.+.+..+++.. .+...||||-+++.++.+...|+..|+.+-.||..+.+.++..+.+.|..|+++|+|+|-+
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEee
Confidence 2 222334444444332 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCCcchhhh-------------------------------------------cccccCCCCC
Q 014486 348 VGRGIDIERVNIVINYDMPDSADTYLH-------------------------------------------RVGRAGRFGT 384 (423)
Q Consensus 348 ~~~Gld~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~ 384 (423)
.++|+|-|++++|||..+|+|+..|.| ..||+||.+.
T Consensus 377 fgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred ecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999999999999999999999 6799999999
Q ss_pred ceEEEEEecCc
Q 014486 385 KGLAITFVSSA 395 (423)
Q Consensus 385 ~~~~~~~~~~~ 395 (423)
+..|+++|.-.
T Consensus 457 ~a~cilyy~~~ 467 (695)
T KOG0353|consen 457 KADCILYYGFA 467 (695)
T ss_pred cccEEEEechH
Confidence 99999998753
No 77
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=258.75 Aligned_cols=276 Identities=29% Similarity=0.495 Sum_probs=217.0
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccC--CCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
|.++|+-|+++|++|....+++|-... |.++...+.||...+.+.+.+.++ .+|+|+||.++...+....+.+..++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhccceeeeeeE
Confidence 568999999999999999887775443 455666888888889999999998 59999999999999999999999999
Q ss_pred EEEEcCcchhhccCCcHHHHHHHHHhCCC------CceEEEEeccCCc-cHHHHHHHhccCCceeeeccccccccccceE
Q 014486 193 HFILDECDKMLESLDMRRDVQEIFKMTPH------DKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 265 (423)
Q Consensus 193 ~vVvDE~h~~~~~~~~~~~~~~~~~~~~~------~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
++|+||++.++. .++...+.++...+++ ..|.+.+|||+.. ++..+.+..++.|..+.+..+...+ ...+
T Consensus 366 FlvlDead~lL~-qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp--etvH 442 (725)
T KOG0349|consen 366 FLVLDEADLLLG-QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP--ETVH 442 (725)
T ss_pred EEEecchhhhhh-cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc--hhhc
Confidence 999999999988 6888888888777654 4689999999753 3344444555555444433222111 0011
Q ss_pred EEEEeC-------------------------------hHH---------HHHHHHHHHHhhcCCcEEEEEcChhhHHHHH
Q 014486 266 HYIKLS-------------------------------ELE---------KNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305 (423)
Q Consensus 266 ~~~~~~-------------------------------~~~---------~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~ 305 (423)
++.... ..+ |.+.-...++.+...+.||||.+...++.+.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 111000 000 1111222334456678999999999999999
Q ss_pred HHHHhCC---CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC
Q 014486 306 KLLVECN---FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (423)
Q Consensus 306 ~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (423)
+++.+.| +.++++|++..+.+|.+.++.|+.+..+.||||+++++|+|+.++-++|++.+|.+...|+||+||+||+
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9998875 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecC
Q 014486 383 GTKGLAITFVSS 394 (423)
Q Consensus 383 g~~~~~~~~~~~ 394 (423)
..-|.++.++..
T Consensus 603 ermglaislvat 614 (725)
T KOG0349|consen 603 ERMGLAISLVAT 614 (725)
T ss_pred hhcceeEEEeec
Confidence 888888888764
No 78
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.1e-34 Score=282.83 Aligned_cols=334 Identities=16% Similarity=0.161 Sum_probs=220.5
Q ss_pred CCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
.|.|||..++..++.. ..++++.++|.|||..+.+.+...+..+... ++|||||. .|..||..++.+.. ++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~-rvLIVvP~-sL~~QW~~El~~kF----~l~ 225 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAE-RVLILVPE-TLQHQWLVEMLRRF----NLR 225 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCC-cEEEEcCH-HHHHHHHHHHHHHh----CCC
Confidence 6899999998776653 4699999999999998876555544443333 89999997 79999999987654 455
Q ss_pred EEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHh-cCCCCCCCccEEEEcCcchhhccCC-cHHHHHHHHHhCC
Q 014486 146 VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKMLESLD-MRRDVQEIFKMTP 220 (423)
Q Consensus 146 ~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~-~~~~~~~~~~~vVvDE~h~~~~~~~-~~~~~~~~~~~~~ 220 (423)
+..+.++....... ..+. ..+++|+|++.+...-. ...+.-..+++||+||||++....+ ....+..+.....
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~--~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFE--TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred eEEEcCcchhhhcccccCccc--cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 55554432211100 1111 24899999998764111 1112234789999999999973211 1222333333333
Q ss_pred CCceEEEEeccCCcc-------------------HHHHH------------------------------HHhccCC----
Q 014486 221 HDKQVMMFSATLSKE-------------------IRPVC------------------------------KKFMQDP---- 247 (423)
Q Consensus 221 ~~~~~v~~SAT~~~~-------------------~~~~~------------------------------~~~~~~~---- 247 (423)
+...++++||||-.. ...+. ..++...
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 455789999997210 00000 0000000
Q ss_pred -----------------------------ceeeecccc---ccccccceEEE-E--------------------------
Q 014486 248 -----------------------------MEIYVDDEA---KLTLHGLVQHY-I-------------------------- 268 (423)
Q Consensus 248 -----------------------------~~~~~~~~~---~~~~~~~~~~~-~-------------------------- 268 (423)
..+.+.... ..........+ .
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 000000000 00000000000 0
Q ss_pred ----------EeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHHhhhcC
Q 014486 269 ----------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGFKEG 337 (423)
Q Consensus 269 ----------~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 337 (423)
......|...+.++++.....|+||||++...+..+.+.|+ ..|+++..+||+++..+|.++++.|+++
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE 543 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC
Confidence 00112344567777777778899999999999999999994 6699999999999999999999999974
Q ss_pred --CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 338 --NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 338 --~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
..+|||||+++++|+|++.+++||+||+|++|..|.||+||++|.|+++.+.+++.. .+......|.+.+..
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~-~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY-LEGTAQERLFRWYHE 617 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc-CCCCHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999999999887666543 333334444444443
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=276.38 Aligned_cols=331 Identities=22% Similarity=0.299 Sum_probs=230.3
Q ss_pred CCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCC-------CCCCeEEEEEecChHHHHHHHHHHH
Q 014486 64 SGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
++|..++.+|..++|..+. +.|.+||||||+|||.++++.|+..+.. ..+..|++||+|+++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 3678899999999999887 5789999999999999999999986653 2345699999999999999998887
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC---CCCCCccEEEEcCcchhhccCCc--HH
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD---LSLKNVRHFILDECDKMLESLDM--RR 210 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~vVvDE~h~~~~~~~~--~~ 210 (423)
+-...+ ++.+..++|+....... +.. .+|+|+||+++.-.-++.. ..++.+++||+||+|.+-++.+. ..
T Consensus 186 kkl~~~-gi~v~ELTGD~ql~~te--i~~--tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPL-GISVRELTGDTQLTKTE--IAD--TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLET 260 (1230)
T ss_pred hhcccc-cceEEEecCcchhhHHH--HHh--cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHH
Confidence 666555 89999999998766554 222 4999999999854333322 23578999999999998764321 11
Q ss_pred ---HHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCce--eeeccccccccccceEEEEEeChH---H--------
Q 014486 211 ---DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPME--IYVDDEAKLTLHGLVQHYIKLSEL---E-------- 274 (423)
Q Consensus 211 ---~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~-------- 274 (423)
+..+.........++|++|||+|+- .+.+.....++.. ++.+... .+..+.+.++-.+.. .
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~y--RPvpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRY--RPVPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccc--cccceeeeEEeeecccchhhhhhHHHH
Confidence 1222223344577899999999975 3344443333221 2222221 112222222222111 1
Q ss_pred HHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC----C-------------------CCeEEEcCCCCHHHHHHHH
Q 014486 275 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----N-------------------FPSICIHSGMSQEERLTRY 331 (423)
Q Consensus 275 ~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~-------------------~~~~~~~~~~~~~~r~~~~ 331 (423)
....+.+++. ++.+++|||++++.....++.|.+. | ......|.+|...+|.-+.
T Consensus 338 ~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 338 CYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 1122233322 4678999999999998888888663 1 1244578999999999999
Q ss_pred HhhhcCCccEEEEcCccccCCCCCCCCEEEE----ccCCC------CcchhhhcccccCCC--CCceEEEEEecCcccHH
Q 014486 332 KGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDMPD------SADTYLHRVGRAGRF--GTKGLAITFVSSASDSD 399 (423)
Q Consensus 332 ~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~~~~------s~~~~~Q~~GR~~R~--g~~~~~~~~~~~~~~~~ 399 (423)
+.|..|.++||+||..+++|+|+|+-..+|- |+..+ ++-+..|..|||||. +..|.++++.+.+.-+.
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 9999999999999999999999996554443 22222 344568999999995 56788888777544444
Q ss_pred HHHHH
Q 014486 400 ILNQV 404 (423)
Q Consensus 400 ~~~~~ 404 (423)
+...|
T Consensus 496 Y~sLl 500 (1230)
T KOG0952|consen 496 YESLL 500 (1230)
T ss_pred HHHHH
Confidence 44443
No 80
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5e-33 Score=260.89 Aligned_cols=291 Identities=20% Similarity=0.250 Sum_probs=203.3
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|++||++++..+.. ++.+++.+|||+|||.+++..+..... ++|||||+.+|+.||.+.+..+... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~--~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL--N 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC--c
Confidence 799999999999998 788999999999999987665554443 4899999999999999777766532 1
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
..+..+.|+...... ..|.|+|.+++........+....+.+||+||||++.. .....+...+....
T Consensus 108 ~~~g~~~~~~~~~~~--------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a-----~~~~~~~~~~~~~~ 174 (442)
T COG1061 108 DEIGIYGGGEKELEP--------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA-----PSYRRILELLSAAY 174 (442)
T ss_pred cccceecCceeccCC--------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc-----HHHHHHHHhhhccc
Confidence 134444444322110 26999999999874211223334789999999998764 22333333333333
Q ss_pred eEEEEeccCCccHHHH---HHHhccCCceeeeccccccc---cccceEEEEEe---------------------------
Q 014486 224 QVMMFSATLSKEIRPV---CKKFMQDPMEIYVDDEAKLT---LHGLVQHYIKL--------------------------- 270 (423)
Q Consensus 224 ~~v~~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------------- 270 (423)
.++++||||++..... +....+ +..+......... ........+..
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 3899999987543111 111111 1111111000000 00000000011
Q ss_pred -----------ChHHHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC
Q 014486 271 -----------SELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338 (423)
Q Consensus 271 -----------~~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 338 (423)
....+...+..++..+ ...+++||+.+..++..++..+...+. +..+.+.++..+|..+++.|+.|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 0111222333333333 367999999999999999999998887 889999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCC
Q 014486 339 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 381 (423)
Q Consensus 339 ~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 381 (423)
+++|+++.++.+|+|+|+++++|...+..|+..|+||+||.-|
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.3e-31 Score=249.41 Aligned_cols=327 Identities=20% Similarity=0.261 Sum_probs=244.7
Q ss_pred CCCCCHHHHHHH-HhCCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 50 DFLLKPELLRAI-VDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 50 ~~~l~~~~~~~l-~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.++.+..+++.+ ...+| +||..|++++..+... .+-+++|..|||||++++++++.....+. ++...+|
T Consensus 244 ~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAP 319 (677)
T COG1200 244 PLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAP 319 (677)
T ss_pred CCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEecc
Confidence 344555555555 44577 7999999999998873 34799999999999999999988877654 8999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHH---HHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCc
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI---HKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDEC 199 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~ 199 (423)
|.-||.|.++.+.++.... ++++..++|...-.. ....+.+|..+|+|+|..-+. ....++++.+||+||=
T Consensus 320 TEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 320 TEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred HHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEecc
Confidence 9999999999999999887 799999999775443 345567788999999976554 4677899999999999
Q ss_pred chhhccCCcHHHHHHHHHhCCC-CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHH
Q 014486 200 DKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK 278 (423)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (423)
|++.- .. +..+..... .+-++.|||||-+....+. .+.+ ..++...+-+.....+....+ +...+...
T Consensus 394 HRFGV----~Q--R~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgD-ldvS~IdElP~GRkpI~T~~i--~~~~~~~v 462 (677)
T COG1200 394 HRFGV----HQ--RLALREKGEQNPHVLVMTATPIPRTLALT--AFGD-LDVSIIDELPPGRKPITTVVI--PHERRPEV 462 (677)
T ss_pred ccccH----HH--HHHHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcc-ccchhhccCCCCCCceEEEEe--ccccHHHH
Confidence 98743 22 222333333 5678999999876554432 2222 223333333333333333333 33333334
Q ss_pred HHHHHHhh-cCCcEEEEEcChhhH--------HHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc
Q 014486 279 LNDLLDAL-DFNQVVIFVKSVSRA--------AELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (423)
Q Consensus 279 l~~ll~~~-~~~~~ivf~~~~~~~--------~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~ 347 (423)
+..+.+.. .++++.|.|+-+++. ..+++.|+.. ++++..+||.|+..++.+++.+|++|+++|||||.+
T Consensus 463 ~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 463 YERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 44443333 467899999887654 4556666643 566889999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCC-CCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 348 VGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 348 ~~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
++.|+|+|+++++|+.+.- ...+++.|-.||+||.+.++.|++++.+...
T Consensus 543 IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 543 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 9999999999998887754 4788999999999999999999999987663
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.6e-31 Score=260.27 Aligned_cols=309 Identities=21% Similarity=0.220 Sum_probs=213.1
Q ss_pred CCChhhhhcccccccC---CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 68 HPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
.|+++|+++++.+..+ +++++.++||||||.+|+.++...+..+ .++||++|+++|+.|+.+.+++.. +.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f----g~ 216 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF----GA 216 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh----CC
Confidence 5899999999999874 6799999999999999988776665542 289999999999999999998754 46
Q ss_pred eEEEEEcCcchHHHHH---HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC----c-HHHHHHHH
Q 014486 145 KVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD----M-RRDVQEIF 216 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~---~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~----~-~~~~~~~~ 216 (423)
++..++|+.+..+... .+.++.++|+|+|+..++ ..+.++++||+||+|....+.. + .+.+. +.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ 288 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VV 288 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HH
Confidence 8889999887654443 344566799999998764 3578899999999997653211 1 12222 33
Q ss_pred HhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccc-cccccceEEEEEeChHH-------HHHHHHHHH-Hhh-
Q 014486 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELE-------KNRKLNDLL-DAL- 286 (423)
Q Consensus 217 ~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~l~~ll-~~~- 286 (423)
.....+.+++++|||++.+....+.. +....+....... ...+ ....+...... -...+.+.+ +.+
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p--~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~ 364 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLP--EVEIIDMRELLRGENGSFLSPPLLEAIKQRLE 364 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCC--eEEEEechhhhhhcccCCCCHHHHHHHHHHHH
Confidence 33456789999999988655443321 1111111111100 0011 11111111100 001222222 222
Q ss_pred cCCcEEEEEcChh------------------------------------------------------------hHHHHHH
Q 014486 287 DFNQVVIFVKSVS------------------------------------------------------------RAAELNK 306 (423)
Q Consensus 287 ~~~~~ivf~~~~~------------------------------------------------------------~~~~l~~ 306 (423)
.++++|||++.+. -.+.+.+
T Consensus 365 ~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e 444 (679)
T PRK05580 365 RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEE 444 (679)
T ss_pred cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHH
Confidence 2457888876521 3456777
Q ss_pred HHHhC--CCCeEEEcCCCC--HHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC--CCC----------cc
Q 014486 307 LLVEC--NFPSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--PDS----------AD 370 (423)
Q Consensus 307 ~L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~--~~s----------~~ 370 (423)
.|++. +.++..+|++++ ..++..+++.|++|+.+|||+|+++++|+|+|++++|+.++. +-+ ..
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 77765 678889999986 467889999999999999999999999999999999965543 322 25
Q ss_pred hhhhcccccCCCCCceEEEEEecCc
Q 014486 371 TYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 371 ~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
.|.|++||+||.+..|.+++.....
T Consensus 525 ~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 525 LLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred HHHHHHhhccCCCCCCEEEEEeCCC
Confidence 6899999999999999999766543
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.8e-32 Score=272.42 Aligned_cols=297 Identities=20% Similarity=0.268 Sum_probs=197.6
Q ss_pred hhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh----HHHHHHHHHHHHHhccCCCceEEE
Q 014486 73 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR----ELAYQICHEFERFSTYLPDIKVAV 148 (423)
Q Consensus 73 Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~----~L~~q~~~~~~~~~~~~~~~~~~~ 148 (423)
..+.+..+..++.++++|+||||||++... ++.....+.. ..+++..|.+ +||.++++++..-. +-.+++
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTTqlPq-~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~l----G~~VGY 152 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTTQLPK-ICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETEL----GGCVGY 152 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhh----cceece
Confidence 344555555666789999999999996332 3332222221 2445556754 66666666665422 112221
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch-hhccCCcHHH-HHHHHHhCCCCceEE
Q 014486 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVM 226 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~-~~~~~~~~~~-~~~~~~~~~~~~~~v 226 (423)
...... ...+ ..+|+|+|++.|+..+.... .+.++++||+||||. .++ .+|... +..+... .++.|+|
T Consensus 153 -----~vrf~~-~~s~-~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn-~DfLLg~Lk~lL~~-rpdlKvI 222 (1294)
T PRK11131 153 -----KVRFND-QVSD-NTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN-IDFILGYLKELLPR-RPDLKVI 222 (1294)
T ss_pred -----eecCcc-ccCC-CCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccc-cchHHHHHHHhhhc-CCCceEE
Confidence 111111 1122 36999999999999887543 489999999999995 555 666543 3333322 3468999
Q ss_pred EEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh------HHHHHHHHHHHH---hhcCCcEEEEEcC
Q 014486 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE------LEKNRKLNDLLD---ALDFNQVVIFVKS 297 (423)
Q Consensus 227 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ll~---~~~~~~~ivf~~~ 297 (423)
++|||++.. .+.+.+...+ .+.+.... . .+...+..... .+....+...+. ....+.+|||+++
T Consensus 223 LmSATid~e--~fs~~F~~ap-vI~V~Gr~---~-pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 223 ITSATIDPE--RFSRHFNNAP-IIEVSGRT---Y-PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EeeCCCCHH--HHHHHcCCCC-EEEEcCcc---c-cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 999999753 4444444434 33333221 1 12223332221 122222222222 2356889999999
Q ss_pred hhhHHHHHHHHHhCCCC---eEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC---------
Q 014486 298 VSRAAELNKLLVECNFP---SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--------- 365 (423)
Q Consensus 298 ~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~--------- 365 (423)
..+++.+++.|...+++ +..+||++++.+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999988765 6689999999999999876 477899999999999999999999999863
Q ss_pred ------C---CCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 366 ------P---DSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 366 ------~---~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
| .|..+|.||+||+||. .+|.|+.+++..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~ 411 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSED 411 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHH
Confidence 3 3457899999999999 689999999853
No 84
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=5.1e-31 Score=260.94 Aligned_cols=312 Identities=21% Similarity=0.226 Sum_probs=203.2
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhcc-CCCce
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIK 145 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 145 (423)
.+|+|+|+.+.........++|.+|||+|||.+++.++...+..++ ..+++|..||++++.++++++.++... ++..+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~-~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL-ADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3799999987544334566899999999999998887665444333 338999999999999999999875432 23446
Q ss_pred EEEEEcCcchHHHH---------------------HHHh---c--CCCcEEEechHHHHH-HHhcCCCCCCC----ccEE
Q 014486 146 VAVFYGGVNIKIHK---------------------DLLK---N--ECPQIVVGTPGRILA-LARDKDLSLKN----VRHF 194 (423)
Q Consensus 146 ~~~~~~~~~~~~~~---------------------~~~~---~--~~~~ilv~T~~~l~~-~~~~~~~~~~~----~~~v 194 (423)
+...+|........ ..+. + --..|+|||.+.++. .+......+.. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 77777765422110 0011 0 014899999998875 33222112222 2489
Q ss_pred EEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccHHHHHHHhccCCce---------eeeccc---ccc--c
Q 014486 195 ILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPME---------IYVDDE---AKL--T 259 (423)
Q Consensus 195 VvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~--~ 259 (423)
||||+|.+.. .....+..+++.+ ....++|+||||+|......+...+..... +..... ... .
T Consensus 444 IiDEVHAyD~--ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 444 IVDEVHAYDA--YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEechhhCCH--HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 9999998743 3444555555543 235679999999998876544332221100 000000 000 0
Q ss_pred cc---cceEEEEEe-----Ch-HHHHHHHHHHHHh-hcCCcEEEEEcChhhHHHHHHHHHhCC---CCeEEEcCCCCHHH
Q 014486 260 LH---GLVQHYIKL-----SE-LEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---FPSICIHSGMSQEE 326 (423)
Q Consensus 260 ~~---~~~~~~~~~-----~~-~~~~~~l~~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~ 326 (423)
.. ......+.+ .. ......+..+++. ..+++++||||+++.++.+++.|++.+ .++..+||.++..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 00 000111111 11 1112233334433 245789999999999999999999764 57899999999999
Q ss_pred HH----HHHHhh-hcCC---ccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCC
Q 014486 327 RL----TRYKGF-KEGN---KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 384 (423)
Q Consensus 327 r~----~~~~~f-~~~~---~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (423)
|. ++++.| ++|+ ..|||+|+++++|+|+ +++++|....| +..++||+||++|.+.
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 94 567788 5565 4799999999999999 57988887777 6789999999999875
No 85
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=6.3e-31 Score=262.71 Aligned_cols=333 Identities=19% Similarity=0.219 Sum_probs=222.2
Q ss_pred CCChhhhhcccccc----cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
++++||..++..++ .+.++|++.++|.|||+..+..+.......+....+|||||. ++..||.+++.+|+ |.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---PV 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---CC
Confidence 68999999998876 367899999999999998654433322222222268999996 67788999998876 56
Q ss_pred ceEEEEEcCcchHHHH--HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC
Q 014486 144 IKVAVFYGGVNIKIHK--DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~ 221 (423)
+++..++|........ ..+..+.++|+|+|++.+..... .+.-..+.+||+||||++.+. .....+....+.
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~---~Sklskalr~L~- 318 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE---NSLLSKTMRLFS- 318 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH---HHHHHHHHHHhh-
Confidence 7888888865433221 22333557999999999876332 222346789999999999762 233344444444
Q ss_pred CceEEEEeccCCcc-HH---HHHHHhccC--------------------------------Cceeeec-cccccccccce
Q 014486 222 DKQVMMFSATLSKE-IR---PVCKKFMQD--------------------------------PMEIYVD-DEAKLTLHGLV 264 (423)
Q Consensus 222 ~~~~v~~SAT~~~~-~~---~~~~~~~~~--------------------------------~~~~~~~-~~~~~~~~~~~ 264 (423)
....+++||||-.. .. .++...... |..+... .......+...
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 33468999997321 11 111100000 0000000 00000000000
Q ss_pred EEEEEe---------------------------------------------------------------ChHHHHHHHHH
Q 014486 265 QHYIKL---------------------------------------------------------------SELEKNRKLND 281 (423)
Q Consensus 265 ~~~~~~---------------------------------------------------------------~~~~~~~~l~~ 281 (423)
...+.+ ....|...+..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 000000 11223334444
Q ss_pred HHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC---ccEEEEcCccccCCCCCC
Q 014486 282 LLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDLVGRGIDIER 356 (423)
Q Consensus 282 ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~ili~T~~~~~Gld~~~ 356 (423)
++..+ .+.++|||+......+.+.+.|...++.+..++|+++..+|..+++.|+++. ..+|++|.+++.|||+..
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 44433 4579999999999999999999999999999999999999999999997643 357889999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEE--EecC-cccHHHHHHHHHHHhc
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT--FVSS-ASDSDILNQVSKFMFL 410 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 410 (423)
+++||+||++|+|....|++||++|.||+..|.+ |+.. ..+..++....++++.
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~L 615 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 615 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999866544 3443 3456666666666654
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=3e-31 Score=226.24 Aligned_cols=200 Identities=42% Similarity=0.737 Sum_probs=178.7
Q ss_pred CcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC--CCCeEEEEEecChH
Q 014486 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRE 125 (423)
Q Consensus 48 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~ 125 (423)
|.++++++.+.+.|.+.|+..|+++|+++++.+..++++++.+|||+|||++++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6789999999999999999999999999999999999999999999999999999999887776 45669999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+.+.++.+.... ++++..++|+.........+..+ .+|+|+||+.+..++......+.+++++|+||+|.+.+
T Consensus 81 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~- 157 (203)
T cd00268 81 LALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRG-PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD- 157 (203)
T ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-
Confidence 9999999999987664 78889999998877776666544 59999999999998888888889999999999999886
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCcee
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 250 (423)
..+...+..+...++...|++++|||+++.....+..++..+..+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 678888999999998899999999999999888888888777543
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3e-31 Score=251.16 Aligned_cols=309 Identities=21% Similarity=0.267 Sum_probs=224.2
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.+| .|-.+|++||.++.+|.+++|+|+|.+|||+++-.++...-.+.. +++|.+|-++|..|-++.|+.-..
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T---R~iYTSPIKALSNQKfRDFk~tF~---- 365 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT---RTIYTSPIKALSNQKFRDFKETFG---- 365 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc---ceEecchhhhhccchHHHHHHhcc----
Confidence 355 789999999999999999999999999999987665554433322 899999999999998888876543
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
.++.++|+..++.+ ..++|+|.+.|..++-++..-+.++.+||+||+|.+.+ ..-.-.+..+.-++|++.
T Consensus 366 -DvgLlTGDvqinPe--------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND-~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 366 -DVGLLTGDVQINPE--------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND-VERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred -ccceeecceeeCCC--------cceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc-ccccccceeeeeeccccc
Confidence 23388888766543 58999999999998888887889999999999999977 677778889999999999
Q ss_pred eEEEEeccCCccHHHHHHHhcc-CCceeeeccccccccccceEEEEEeC-------------------------------
Q 014486 224 QVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLS------------------------------- 271 (423)
Q Consensus 224 ~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 271 (423)
++|++|||.|+... ++.+... ....+++......+.+. .+++...
T Consensus 436 ~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPL--Eh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 436 NFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPL--EHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred eEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccce--EEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 99999999998643 3322211 11112211111111000 0000000
Q ss_pred -----------------------------------hHHH---HHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCC
Q 014486 272 -----------------------------------ELEK---NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF 313 (423)
Q Consensus 272 -----------------------------------~~~~---~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~ 313 (423)
...+ ...+...+....-=++||||-+++.|+..++.|...++
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 0000 12222233333345799999999999999999876321
Q ss_pred ---------------------------------------CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCC
Q 014486 314 ---------------------------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (423)
Q Consensus 314 ---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~ 354 (423)
.+.+.||++=+--++-+.--|..|-++||+||..+++|+|.
T Consensus 593 ~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNM 672 (1248)
T KOG0947|consen 593 TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNM 672 (1248)
T ss_pred ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCC
Confidence 35567899888888888889999999999999999999999
Q ss_pred CCCCEEEEccCCC---------CcchhhhcccccCCCCC--ceEEEEEecC
Q 014486 355 ERVNIVINYDMPD---------SADTYLHRVGRAGRFGT--KGLAITFVSS 394 (423)
Q Consensus 355 ~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g~--~~~~~~~~~~ 394 (423)
|.-++|+ -...+ .|.+|.|++|||||.|- +|.++++...
T Consensus 673 PARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 673 PARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred CceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 9555444 33322 68899999999999985 4666666543
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=1.2e-30 Score=264.47 Aligned_cols=298 Identities=18% Similarity=0.247 Sum_probs=202.3
Q ss_pred hcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCc-
Q 014486 75 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV- 153 (423)
Q Consensus 75 ~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~- 153 (423)
+.+..+..++.++|+|+||||||......++... .+ ...++++..|.+.-|..++.++.+.... .++...|..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~~-~~~~I~~tQPRRlAA~svA~RvA~elg~----~lG~~VGY~v 147 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-RG-SHGLIGHTQPRRLAARTVAQRIAEELGT----PLGEKVGYKV 147 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-CC-CCceEecCCccHHHHHHHHHHHHHHhCC----CcceEEeeEE
Confidence 4445555567789999999999996544343322 12 2226777789998888888777665432 333333321
Q ss_pred chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch-hhccCCcHHH-HHHHHHhCCCCceEEEEecc
Q 014486 154 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 154 ~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~-~~~~~~~~~~-~~~~~~~~~~~~~~v~~SAT 231 (423)
..... . +....|.++|++.|+..+.... .+.++++||+||+|. .++ .++... +..+... .++.|+|+||||
T Consensus 148 R~~~~---~-s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~-~D~LL~lLk~il~~-rpdLKlIlmSAT 220 (1283)
T TIGR01967 148 RFHDQ---V-SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLN-IDFLLGYLKQLLPR-RPDLKIIITSAT 220 (1283)
T ss_pred cCCcc---c-CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhcc-chhHHHHHHHHHhh-CCCCeEEEEeCC
Confidence 11111 1 2225899999999999776543 478999999999995 555 566554 4455433 457899999999
Q ss_pred CCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC------hHHHHHHHHHHHHh---hcCCcEEEEEcChhhHH
Q 014486 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS------ELEKNRKLNDLLDA---LDFNQVVIFVKSVSRAA 302 (423)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~ll~~---~~~~~~ivf~~~~~~~~ 302 (423)
++. ..+.+.+...+ .+.+.... .+ +...+.... ..+....+...+.. ...+.+|||+++..++.
T Consensus 221 ld~--~~fa~~F~~ap-vI~V~Gr~---~P-Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~ 293 (1283)
T TIGR01967 221 IDP--ERFSRHFNNAP-IIEVSGRT---YP-VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIR 293 (1283)
T ss_pred cCH--HHHHHHhcCCC-EEEECCCc---cc-ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHH
Confidence 974 34444444333 23332211 11 112222111 11222333333322 24588999999999999
Q ss_pred HHHHHHHhCCC---CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC------------
Q 014486 303 ELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------ 367 (423)
Q Consensus 303 ~l~~~L~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~------------ 367 (423)
.+.+.|.+.+. .+..+||+++..+|..+++.+ +..+|||||+++++|+|+|++++||+++.++
T Consensus 294 ~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 294 DAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 99999987654 477899999999999997654 2468999999999999999999999998543
Q ss_pred ------CcchhhhcccccCCCCCceEEEEEecCc
Q 014486 368 ------SADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 368 ------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
|..++.||.||+||.| +|.|+.+++..
T Consensus 372 L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 372 LPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred cCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 5578999999999997 89999999854
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=1.8e-30 Score=246.54 Aligned_cols=290 Identities=21% Similarity=0.214 Sum_probs=192.5
Q ss_pred EEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHh
Q 014486 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLK 163 (423)
Q Consensus 87 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 163 (423)
++.||||||||.+|+..+...+..++ ++||++|+++|+.|+++.+++.. +.++..++++.+..+.. ..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 47899999999999766555443322 89999999999999999998764 45788889887655443 3344
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC----Cc-HHHHHHHHHhCCCCceEEEEeccCCccHHH
Q 014486 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL----DM-RRDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~----~~-~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (423)
++..+|+|+|+..++ ..+.++++|||||.|....+. .+ .+.+..... ...+.+++++||||..+...
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCHHHHH
Confidence 566799999998774 357889999999999875321 11 122333333 33577899999998765444
Q ss_pred HHHHhccCCceeeeccccccccccceEEEEEeChHH----HHHHHHHHH-Hhh-cCCcEEEEEcChhh------------
Q 014486 239 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE----KNRKLNDLL-DAL-DFNQVVIFVKSVSR------------ 300 (423)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ll-~~~-~~~~~ivf~~~~~~------------ 300 (423)
.+.. +....+....... .........+...... -...+.+.+ +.. .++++|||+|++..
T Consensus 146 ~~~~--g~~~~~~l~~r~~-~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 146 NAKQ--KAYRLLVLTRRVS-GRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHhc--CCeEEeechhhhc-CCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 3321 1111111111000 0000011111111111 011222222 223 24689999766432
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCCeEEEcCCCCHHHH--H
Q 014486 301 ------------------------------------------------AAELNKLLVEC--NFPSICIHSGMSQEER--L 328 (423)
Q Consensus 301 ------------------------------------------------~~~l~~~L~~~--~~~~~~~~~~~~~~~r--~ 328 (423)
.+.+.+.|++. +.++..+|++++...+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777777776 6788999999876655 8
Q ss_pred HHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC------------CcchhhhcccccCCCCCceEEEEEecC
Q 014486 329 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 329 ~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
.+++.|++|+.+|||+|+++++|+|+|++++|+.++... ....+.|++||+||.++.|.+++....
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 899999999999999999999999999999986544321 235689999999999999998865543
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.2e-30 Score=248.22 Aligned_cols=316 Identities=19% Similarity=0.231 Sum_probs=227.9
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|++.|--+--.+ +..-|..++||+|||+++++|++..+..+. .++|++|++.||.|.++++..+.... ++++.
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~ 155 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVG 155 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhccc-CceEE
Confidence 5677776654444 445699999999999999999997766443 68999999999999999999998887 89999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC-CCCC-----CCccEEEEcCcchhhcc---------------
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLES--------------- 205 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~-~~~~-----~~~~~vVvDE~h~~~~~--------------- 205 (423)
++.|+.+.......+ . ++|+++||+.| +++++.+ .+.+ ..+.++|+||||.++-+
T Consensus 156 ~i~gg~~~~~r~~~y--~-~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~ 232 (896)
T PRK13104 156 VIYPDMSHKEKQEAY--K-ADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDS 232 (896)
T ss_pred EEeCCCCHHHHHHHh--C-CCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccc
Confidence 999998777665444 2 59999999999 8888766 2333 58899999999988621
Q ss_pred CCcHHHHHHHHHhCCC--------------Cc------------------------------------------------
Q 014486 206 LDMRRDVQEIFKMTPH--------------DK------------------------------------------------ 223 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------------~~------------------------------------------------ 223 (423)
.........+...+.. ..
T Consensus 233 ~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~ 312 (896)
T PRK13104 233 SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAH 312 (896)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHH
Confidence 0011111111111110 00
Q ss_pred --------------------------------------------------------------------eEEEEeccCCcc
Q 014486 224 --------------------------------------------------------------------QVMMFSATLSKE 235 (423)
Q Consensus 224 --------------------------------------------------------------------~~v~~SAT~~~~ 235 (423)
++-+||+|...+
T Consensus 313 ~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te 392 (896)
T PRK13104 313 AMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTE 392 (896)
T ss_pred HHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhH
Confidence 233444444443
Q ss_pred HHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhCCC
Q 014486 236 IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNF 313 (423)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~ 313 (423)
...+.+.+......+.. ..+..... ....+......|...+.+-+.. ..+.|+||||++++.++.+++.|...|+
T Consensus 393 ~~Ef~~iY~l~Vv~IPt--nkp~~R~d-~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi 469 (896)
T PRK13104 393 AYEFQQIYNLEVVVIPT--NRSMIRKD-EADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENI 469 (896)
T ss_pred HHHHHHHhCCCEEECCC--CCCcceec-CCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 33333333322222211 11111111 1223344556666666555532 3568999999999999999999999999
Q ss_pred CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC--------------------------------------
Q 014486 314 PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE-------------------------------------- 355 (423)
Q Consensus 314 ~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~-------------------------------------- 355 (423)
++..+|+.+.+.++..+.+.|+.|. |+|||++++||+|+.
T Consensus 470 ~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 547 (896)
T PRK13104 470 KHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAA 547 (896)
T ss_pred CeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHc
Confidence 9999999999999999999999995 999999999999986
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+--|||-...+.|-.--.|-.||+||.|.+|..-.|++-.++
T Consensus 548 GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 548 GGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223688888888888889999999999999999999986443
No 91
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=250.62 Aligned_cols=329 Identities=24% Similarity=0.315 Sum_probs=231.2
Q ss_pred HHHHHHHHhCCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCC--------CCeEEEEEecChH
Q 014486 55 PELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRE 125 (423)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~ 125 (423)
.+-..++. |...++++|....+..+.+ .++++|||||+|||.++++.+++.+..+. ...+++|++|..+
T Consensus 298 ~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKa 375 (1674)
T KOG0951|consen 298 KWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKA 375 (1674)
T ss_pred chhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHH
Confidence 33344443 5567999999999988886 56999999999999999999998765543 2348999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-C-CCCccEEEEcCcchhh
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-S-LKNVRHFILDECDKML 203 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~-~~~~~~vVvDE~h~~~ 203 (423)
|++.|...+.+....+ +++|.-.+|+........ . + .+|+||||+.+.-+-++... . .+-++++|+||.|.+-
T Consensus 376 LvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qi--e-e-TqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 376 LVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQI--E-E-TQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHhhcccc-CcEEEEecccccchhhhh--h-c-ceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 9999999888877777 899999999866433221 1 2 49999999998554443221 1 3467899999999885
Q ss_pred ccCCc--HHHHHHHHHh---CCCCceEEEEeccCCccHHHHHHHhccCCce-eeeccccccccccceEEEEEeCh--HHH
Q 014486 204 ESLDM--RRDVQEIFKM---TPHDKQVMMFSATLSKEIRPVCKKFMQDPME-IYVDDEAKLTLHGLVQHYIKLSE--LEK 275 (423)
Q Consensus 204 ~~~~~--~~~~~~~~~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~ 275 (423)
++.+. .....+..+. -....+++++|||+|+.. +.......++.. ++.+.... ...+.+.++-+.+ ..+
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccC--cCCccceEeccccCCchH
Confidence 53222 2222233222 233678999999999753 222222222222 22322222 2223334433322 222
Q ss_pred H------HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHh-------------------------------------CC
Q 014486 276 N------RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-------------------------------------CN 312 (423)
Q Consensus 276 ~------~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~-------------------------------------~~ 312 (423)
. ....++++....+++|||+.++++....++.+++ ..
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 2 2344566777789999999999988877777763 13
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----ccC------CCCcchhhhcccccCCC
Q 014486 313 FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDM------PDSADTYLHRVGRAGRF 382 (423)
Q Consensus 313 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~ 382 (423)
+...+.|.+|++.+|..+.+.|.+|.++|+++|..+++|+|+|.-+++|- |++ +.++.+..||.||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 56778899999999999999999999999999999999999997776662 444 34788999999999997
Q ss_pred C--CceEEEEEec
Q 014486 383 G--TKGLAITFVS 393 (423)
Q Consensus 383 g--~~~~~~~~~~ 393 (423)
+ +.|..+++..
T Consensus 688 ~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 688 QYDTCGEGIIITD 700 (1674)
T ss_pred ccCcCCceeeccC
Confidence 5 3466665544
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.4e-29 Score=245.65 Aligned_cols=318 Identities=20% Similarity=0.230 Sum_probs=237.6
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|++.|--+.-.+..| -|..+.||+|||+++.+|++.....+. .+-|++|+..||.|.++.+..+.... ++
T Consensus 79 g~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~L-Gl 151 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFL-GL 151 (830)
T ss_pred CC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhc-CC
Confidence 44 7888888776665554 599999999999999999974444333 46699999999999999999998887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCCC------CCCCccEEEEcCcchhhcc------------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDL------SLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~~------~~~~~~~vVvDE~h~~~~~------------ 205 (423)
++.++.|+.+...+...+. ++|+++|+..| +++++.... ....+.++|+||||.++-+
T Consensus 152 sv~~i~~~~~~~er~~~y~---~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~ 228 (830)
T PRK12904 152 SVGVILSGMSPEERREAYA---ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPA 228 (830)
T ss_pred eEEEEcCCCCHHHHHHhcC---CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCC
Confidence 9999999988776666543 59999999999 888876542 3578899999999988621
Q ss_pred ---CCcHHHHHHHHHhCCCC--------c---------------------------------------------------
Q 014486 206 ---LDMRRDVQEIFKMTPHD--------K--------------------------------------------------- 223 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~~--------~--------------------------------------------------- 223 (423)
.........+...+... .
T Consensus 229 ~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYi 308 (830)
T PRK12904 229 EDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYI 308 (830)
T ss_pred CcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEE
Confidence 01111122222222110 0
Q ss_pred ----------------------------------------------------------eEEEEeccCCccHHHHHHHhcc
Q 014486 224 ----------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQ 245 (423)
Q Consensus 224 ----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~ 245 (423)
++.+||+|...+...+.+.+..
T Consensus 309 V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l 388 (830)
T PRK12904 309 VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNL 388 (830)
T ss_pred EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCC
Confidence 4566777776554444444433
Q ss_pred CCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
....+.. ..+..... ....+.....+|...+.+.+.. ..+.++||||++++.++.+++.|.+.|+++..+|+.
T Consensus 389 ~vv~IPt--nkp~~r~d-~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 389 DVVVIPT--NRPMIRID-HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CEEEcCC--CCCeeeee-CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 3322222 21111111 1223444666778888887755 567899999999999999999999999999999996
Q ss_pred HHHHHHHHHhhhcCCccEEEEcCccccCCCCCC--------------------------------------CCEEEEccC
Q 014486 324 QEERLTRYKGFKEGNKRILVATDLVGRGIDIER--------------------------------------VNIVINYDM 365 (423)
Q Consensus 324 ~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~--------------------------------------~~~vi~~~~ 365 (423)
+.+|+..+..|..+...|+|||++++||+|++- --|||....
T Consensus 464 q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer 543 (830)
T PRK12904 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER 543 (830)
T ss_pred hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc
Confidence 778999999999999999999999999999863 236888888
Q ss_pred CCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+.|-.--.|-.||+||.|.+|.+-.|++-.++
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 99998899999999999999999999986444
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-29 Score=244.44 Aligned_cols=318 Identities=19% Similarity=0.211 Sum_probs=229.0
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|++.|--+.-.+..|+ |..+.||+|||+++.+|++.....+. .+-+++|+.-||.|-++.+..+...+ ++
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl 150 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWL-GL 150 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhc-CC
Confidence 44 78888887766665554 99999999999999999888877665 78999999999999999999999887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcCC------CCCCCccEEEEcCcchhhcc------------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~-~~~~~~~------~~~~~~~~vVvDE~h~~~~~------------ 205 (423)
+++.+.++.+.......+ . .+|+++|...|. ++++.+. .....+.+.||||+|.++-+
T Consensus 151 ~vg~i~~~~~~~~r~~~y-~--~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~ 227 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY-N--CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQA 227 (796)
T ss_pred eEEEeCCCCCHHHHHHHh-c--CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCC
Confidence 999998877665554444 2 499999998763 3444321 12356789999999987621
Q ss_pred ---CCcHHHHHHHHHhCCC--------------------Cc---------------------------------------
Q 014486 206 ---LDMRRDVQEIFKMTPH--------------------DK--------------------------------------- 223 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~--------------------~~--------------------------------------- 223 (423)
......+..+...+.. ..
T Consensus 228 ~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 307 (796)
T PRK12906 228 EKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRA 307 (796)
T ss_pred CcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHH
Confidence 0011111111111100 00
Q ss_pred ---------------------------------------------------------------------eEEEEeccCCc
Q 014486 224 ---------------------------------------------------------------------QVMMFSATLSK 234 (423)
Q Consensus 224 ---------------------------------------------------------------------~~v~~SAT~~~ 234 (423)
++.+||+|...
T Consensus 308 ~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~ 387 (796)
T PRK12906 308 NYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT 387 (796)
T ss_pred HHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH
Confidence 34556666554
Q ss_pred cHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCC
Q 014486 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECN 312 (423)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~ 312 (423)
+...+.+.+...... ++...+.. ..-....+......|...+.+.+... .+.++||||+++..++.++..|.+.|
T Consensus 388 e~~Ef~~iY~l~vv~--IPtnkp~~-r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 388 EEEEFREIYNMEVIT--IPTNRPVI-RKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHhCCCEEE--cCCCCCee-eeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 433333333322222 22211111 11112223345566777777777443 67899999999999999999999999
Q ss_pred CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC---CCC-----EEEEccCCCCcchhhhcccccCCCCC
Q 014486 313 FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGT 384 (423)
Q Consensus 313 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (423)
+++..+|+++...++..+..+++.|. |+|||++++||+|++ ++. |||.++.|.|...+.|+.||+||.|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999998777777777766665 999999999999995 788 99999999999999999999999999
Q ss_pred ceEEEEEecCccc
Q 014486 385 KGLAITFVSSASD 397 (423)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (423)
+|.+..|++..++
T Consensus 543 ~G~s~~~~sleD~ 555 (796)
T PRK12906 543 PGSSRFYLSLEDD 555 (796)
T ss_pred CcceEEEEeccch
Confidence 9999999986543
No 94
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.1e-28 Score=239.28 Aligned_cols=322 Identities=21% Similarity=0.212 Sum_probs=241.3
Q ss_pred CCCCHHHHHHHHhC-CCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 51 FLLKPELLRAIVDS-GFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 51 ~~l~~~~~~~l~~~-~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
|+.+...+..+.+. +| .-|+-|..||..+... -|-+|||..|.|||.+++=++......++ ++.|+|||
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPT 652 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPT 652 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEccc
Confidence 44455555555553 56 6799999999988862 46899999999999998877777766553 89999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcc
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h 200 (423)
.-||+|.++.|++-...+ .+++..+.-=.+..++ .+.+.+|..||+|+|..-| +....+.+++++||||=|
T Consensus 653 TlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 653 TLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 999999999998776666 4666666554444433 4566779999999997544 356788999999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (423)
++.- .....+..+ ..+.-++-|||||-+....+.-.-..+...+...+.... . ++.++...+... .-.
T Consensus 727 RFGV--k~KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~---p-V~T~V~~~d~~~--ire 794 (1139)
T COG1197 727 RFGV--KHKEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRL---P-VKTFVSEYDDLL--IRE 794 (1139)
T ss_pred hcCc--cHHHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCc---c-eEEEEecCChHH--HHH
Confidence 8753 344444444 455569999999977666554444444444444433322 2 333333222221 111
Q ss_pred HHHHh-hcCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 281 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 281 ~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
.++.. .+++++-..+|.++....+++.|+.. ..++.+.||.|+..+-+.++..|.+|+.+|||||.+++.|+|+|++
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnA 874 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNA 874 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCC
Confidence 12222 36789999999999999999999986 5567789999999999999999999999999999999999999999
Q ss_pred CEEEEccCC-CCcchhhhcccccCCCCCceEEEEEecC
Q 014486 358 NIVINYDMP-DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 358 ~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
+.+|.-+.. ...+++.|-.||+||.++.+-+++++.+
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred ceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 998865543 4688999999999999999999999985
No 95
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.1e-28 Score=237.19 Aligned_cols=149 Identities=17% Similarity=0.290 Sum_probs=129.4
Q ss_pred cCCCCCHHHHHHHH-----hCCCCCC---ChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEE
Q 014486 49 RDFLLKPELLRAIV-----DSGFEHP---SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (423)
Q Consensus 49 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (423)
+.|++.+.+.+.+. .+||..| +|+|.++++.++.+++++..++||+|||++|++|++..+..+. .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 56788888888888 5688888 9999999999999999999999999999999999998775433 47899
Q ss_pred ecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCCCCCC-------Ccc
Q 014486 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDLSLK-------NVR 192 (423)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~~~~~-------~~~ 192 (423)
+|++.||.|.++.+..+.... ++++..+.||.+...+...+ . ++|+|+||++| +++++.+...++ .+.
T Consensus 142 TpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~-~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~ 217 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--Q-CDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFY 217 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--C-CCEEEECCChhHHHHhhCCCCCcCHHHhhccccc
Confidence 999999999999999998876 79999999999988776555 2 69999999999 999987755554 568
Q ss_pred EEEEcCcchhhc
Q 014486 193 HFILDECDKMLE 204 (423)
Q Consensus 193 ~vVvDE~h~~~~ 204 (423)
++|+||||.++.
T Consensus 218 ~~IIDEADsmLi 229 (970)
T PRK12899 218 FAIIDEVDSILI 229 (970)
T ss_pred EEEEechhhhhh
Confidence 999999998873
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.97 E-value=1.3e-28 Score=250.74 Aligned_cols=317 Identities=18% Similarity=0.190 Sum_probs=197.9
Q ss_pred CCChhhhhccccccc-----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.+|+||.+++..+.. .+.++++++||||||.+++..+ ..+...+...++|+|+|+.+|+.|+.+.|..+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~- 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG- 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc-
Confidence 589999999987763 3568999999999998865433 333333333489999999999999999988763211
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-----CCCCCCccEEEEcCcchhhc--------cC---
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLE--------SL--- 206 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-----~~~~~~~~~vVvDE~h~~~~--------~~--- 206 (423)
...+..+.+. ............+|+|+|.+++...+... ...+..+++||+||||+... ..
T Consensus 491 ~~~~~~i~~i---~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 491 DQTFASIYDI---KGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred ccchhhhhch---hhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 1111111111 11111112223599999999998754321 13467889999999998531 00
Q ss_pred ---CcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHH--------------hcc---CCceeeeccc-ccccccc---
Q 014486 207 ---DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK--------------FMQ---DPMEIYVDDE-AKLTLHG--- 262 (423)
Q Consensus 207 ---~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~--------------~~~---~~~~~~~~~~-~~~~~~~--- 262 (423)
.+...++.++..+. ...|++||||......+... ++. .|..+..... .......
T Consensus 568 ~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 12355666666553 46899999997654332211 111 0111110000 0000000
Q ss_pred ---ceE---EE--EEeCh--------HH-------HHHH----HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC----
Q 014486 263 ---LVQ---HY--IKLSE--------LE-------KNRK----LNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---- 311 (423)
Q Consensus 263 ---~~~---~~--~~~~~--------~~-------~~~~----l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~---- 311 (423)
... .+ ...++ .. .... +.+.+....++|+||||.+..+|..+.+.|.+.
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 000 00 00000 00 0111 111222223479999999999999998887653
Q ss_pred --CC---CeEEEcCCCCHHHHHHHHHhhhcCCc-cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCC-
Q 014486 312 --NF---PSICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT- 384 (423)
Q Consensus 312 --~~---~~~~~~~~~~~~~r~~~~~~f~~~~~-~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~- 384 (423)
+. .+..++|..+ ++..+++.|+++.. .|+|+++++.+|+|+|.+.+||++.++.|...|.|++||+.|.-.
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~ 803 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPE 803 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCcc
Confidence 12 3456888875 46778999999887 689999999999999999999999999999999999999999533
Q ss_pred -ceEEEEEec
Q 014486 385 -KGLAITFVS 393 (423)
Q Consensus 385 -~~~~~~~~~ 393 (423)
......+++
T Consensus 804 ~~K~~f~I~D 813 (1123)
T PRK11448 804 IGKTHFRIFD 813 (1123)
T ss_pred CCCceEEEEe
Confidence 234444444
No 97
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=5.6e-29 Score=231.18 Aligned_cols=330 Identities=20% Similarity=0.271 Sum_probs=223.7
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.+++||.+.++++.+ |-++|++..+|.|||++.+. .+..+.. .+-...-||++|...|. +|..++++|. |
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~---P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFT---P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhC---C
Confidence 789999999998876 66799999999999987543 3332222 22122569999988774 4666677765 7
Q ss_pred CceEEEEEcCcchHHH--HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC
Q 014486 143 DIKVAVFYGGVNIKIH--KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP 220 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~ 220 (423)
++++.+++|+...+.. ...+..+.++|+|+|+++.++- ...+.-..++++||||||++.+ ....+.++++.+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN---~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKN---EKSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcc---hhhHHHHHHHHhc
Confidence 8999999998754332 2334456789999999988752 2223335678999999999976 3444445666655
Q ss_pred CCceEEEEeccCCcc-HHH---HH-------------------------------------H------------HhccCC
Q 014486 221 HDKQVMMFSATLSKE-IRP---VC-------------------------------------K------------KFMQDP 247 (423)
Q Consensus 221 ~~~~~v~~SAT~~~~-~~~---~~-------------------------------------~------------~~~~~~ 247 (423)
... .+++|+||-.. +.. ++ + ..+...
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 433 68888996111 000 00 0 000000
Q ss_pred cee--ee---------------------cccc----------------ccccccceEEE----------EEeChHHHHHH
Q 014486 248 MEI--YV---------------------DDEA----------------KLTLHGLVQHY----------IKLSELEKNRK 278 (423)
Q Consensus 248 ~~~--~~---------------------~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~~ 278 (423)
.++ ++ .... .+..+.+.... ..+....|...
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 000 00 0000 00000000000 01122335556
Q ss_pred HHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc---cEEEEcCccccCCC
Q 014486 279 LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RILVATDLVGRGID 353 (423)
Q Consensus 279 l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~ili~T~~~~~Gld 353 (423)
|..+|..+ .+++||||.+-....+.+.+++.-+++.+..+.|.++..+|...++.|..... -.|++|.+++.|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 66666554 56899999999999999999999999999999999999999999999987653 47789999999999
Q ss_pred CCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE--ecC-cccHHHHHHHHHHH
Q 014486 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF--VSS-ASDSDILNQVSKFM 408 (423)
Q Consensus 354 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~--~~~-~~~~~~~~~~~~~~ 408 (423)
+..+++||.||..|+|+.-.|+..||+|.||...|.+| ++. .-+..++.....++
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998766654 443 33444444444444
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-27 Score=203.14 Aligned_cols=313 Identities=16% Similarity=0.220 Sum_probs=214.6
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
++++.|+.+-..+++ .++.+++|-||+|||..... .++.....+. ++.+.+|+...+.+++.+++.-. ++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~-~i~~al~~G~--~vciASPRvDVclEl~~Rlk~aF---~~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQ-GIEQALNQGG--RVCIASPRVDVCLELYPRLKQAF---SN 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHH-HHHHHHhcCC--eEEEecCcccchHHHHHHHHHhh---cc
Confidence 789999988776665 57899999999999986544 4444443333 88999999999999998888755 35
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
..+..++|+...... ..++|+|...|+++.+ .|+++|+||+|.+-- ..-......+.+......
T Consensus 171 ~~I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~-~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 171 CDIDLLYGDSDSYFR--------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPF-SDDQSLQYAVKKARKKEG 234 (441)
T ss_pred CCeeeEecCCchhcc--------ccEEEEehHHHHHHHh-------hccEEEEeccccccc-cCCHHHHHHHHHhhcccC
Confidence 688888887654322 3899999999987654 467899999997743 122222233334444466
Q ss_pred eEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHH-------HHHHHHHHhh--cCCcEEEE
Q 014486 224 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN-------RKLNDLLDAL--DFNQVVIF 294 (423)
Q Consensus 224 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~ll~~~--~~~~~ivf 294 (423)
.+|++|||+++.+...+..--.. .+.+.... ...+.....++......|. ..+...++.. .+.+++||
T Consensus 235 ~~IylTATp~k~l~r~~~~g~~~--~~klp~Rf-H~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 235 ATIYLTATPTKKLERKILKGNLR--ILKLPARF-HGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred ceEEEecCChHHHHHHhhhCCee--Eeecchhh-cCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 79999999998766543321111 11111111 1111122233333333322 2556666544 34799999
Q ss_pred EcChhhHHHHHHHHHhC-C-CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCC--CCcc
Q 014486 295 VKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--DSAD 370 (423)
Q Consensus 295 ~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~--~s~~ 370 (423)
+++++..+.++..|+.. . ..+..+|+. ...|.+..++|++|++++||+|.++++|+.+|++++.+.-..- .+-+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999543 2 344567775 5578899999999999999999999999999999987765544 5677
Q ss_pred hhhhcccccCCCC-CceEEEEEecCcccHHHHHHHHHH
Q 014486 371 TYLHRVGRAGRFG-TKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 371 ~~~Q~~GR~~R~g-~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
.++|..||+||.- .+..-++|++......+.....+.
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keI 427 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEI 427 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHH
Confidence 8999999999953 333334466666666666555543
No 99
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.5e-28 Score=237.97 Aligned_cols=319 Identities=18% Similarity=0.224 Sum_probs=230.5
Q ss_pred hCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
..+| .|-++|++++..+-++.+++++||||+|||.+.-.++...+..+. +++|.+|.++|..|.+..+.......
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 3456 689999999999999999999999999999998887777766555 69999999999999988887654322
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~ 222 (423)
.-.++.++|+..++ +...++|.|.+.|.+++..+...+.++.+||+||+|.+.+ ..-...+..+...++..
T Consensus 190 ~~~vGL~TGDv~IN--------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D-~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 190 ADMVGLMTGDVSIN--------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGD-RERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhccceecceeeC--------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccc-cccchhHHHHHHhcCCC
Confidence 22467888876654 3468999999999999988888889999999999999987 66777788899999999
Q ss_pred ceEEEEeccCCccHH--HHHHHhccCCceeeeccccccccccceE---EEEE-eC-------------------------
Q 014486 223 KQVMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQ---HYIK-LS------------------------- 271 (423)
Q Consensus 223 ~~~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------------- 271 (423)
.++|++|||+|+... ..+......+..+......+.+...... ..+. +.
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 999999999987643 2222222333322221111111000000 0000 00
Q ss_pred ----------------------hHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHh-------------------
Q 014486 272 ----------------------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE------------------- 310 (423)
Q Consensus 272 ----------------------~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~------------------- 310 (423)
...+...+...+.....-++|+|+-++..|+..+..+..
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 000112234444444556899999999988887777652
Q ss_pred ---------CCCC-------------eEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC---
Q 014486 311 ---------CNFP-------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--- 365 (423)
Q Consensus 311 ---------~~~~-------------~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~--- 365 (423)
++++ ....|+++=+..+..+...|..|-++|+++|.+++.|+|.|.-++|+ ...
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~ 499 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKF 499 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEe
Confidence 1121 23568999999999999999999999999999999999999555444 332
Q ss_pred ------CCCcchhhhcccccCCCCCc--eEEEEEecCcc
Q 014486 366 ------PDSADTYLHRVGRAGRFGTK--GLAITFVSSAS 396 (423)
Q Consensus 366 ------~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~ 396 (423)
.-++.+|.|+.|||||.|.+ |.++++..+..
T Consensus 500 dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 500 DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred cCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 23788999999999999965 77777644433
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=4.3e-28 Score=224.58 Aligned_cols=317 Identities=18% Similarity=0.233 Sum_probs=228.8
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
++-|+|..+|..+-++.++++.|.|.+|||.++-.++...+.... +++|.+|-++|..|-++++..-.. .++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~-----DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK-----DVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc-----ccc
Confidence 678999999999999999999999999999999888888777654 899999999999999887765443 456
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
..+|+..++ .....+|+|.+.|..++-++..-+..+.+||+||+|.+-+ ..-.-.+..-.-.+|++.+.++
T Consensus 201 LMTGDVTIn--------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD-kERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 201 LMTGDVTIN--------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD-KERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred eeecceeeC--------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc-cccceeeeeeEEeccccceEEE
Confidence 677766543 3358999999999998888887888999999999999976 3444445555667899999999
Q ss_pred EeccCCccHHHHHHH---hccCCceeeeccccccccccce------EEEEEeChH-------------------------
Q 014486 228 FSATLSKEIRPVCKK---FMQDPMEIYVDDEAKLTLHGLV------QHYIKLSEL------------------------- 273 (423)
Q Consensus 228 ~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~------------------------- 273 (423)
+|||+|+... ++++ .-.+|..+...+-.+.+..... -.+..+.+.
T Consensus 272 LSATiPNA~q-FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~ 350 (1041)
T KOG0948|consen 272 LSATIPNARQ-FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKK 350 (1041)
T ss_pred EeccCCCHHH-HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccc
Confidence 9999998743 3333 3334433332221111111000 001111000
Q ss_pred ------------------HHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCC-----------------------
Q 014486 274 ------------------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN----------------------- 312 (423)
Q Consensus 274 ------------------~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~----------------------- 312 (423)
.....+...+-.....++|||+-++++|+.++-.+.+..
T Consensus 351 ~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lse 430 (1041)
T KOG0948|consen 351 KANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSE 430 (1041)
T ss_pred ccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcCh
Confidence 011233344444456789999999999988877765521
Q ss_pred ----------------CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC---------
Q 014486 313 ----------------FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD--------- 367 (423)
Q Consensus 313 ----------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~--------- 367 (423)
-.+.+.||++-+--++-+.--|.+|-+++|+||...+.|+|-|.-++|+ ....+
T Consensus 431 eDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fRwi 509 (1041)
T KOG0948|consen 431 EDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFRWI 509 (1041)
T ss_pred hhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcceeee
Confidence 1244679999988888888899999999999999999999999655444 33221
Q ss_pred CcchhhhcccccCCCCCc--eEEEEEecCcccHHHHHH
Q 014486 368 SADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQ 403 (423)
Q Consensus 368 s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~~~~~~ 403 (423)
|-.+|+|+.|||||.|.+ |.|+++++...+......
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 566899999999999964 788888887666544333
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.8e-27 Score=228.16 Aligned_cols=316 Identities=17% Similarity=0.213 Sum_probs=225.4
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|++.|--+--.+ .+.-|..++||.|||+++.+|++.....+. .+.|++|+..||.|.++++..+...+ ++++.
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~ 155 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFL-GLTVG 155 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEE
Confidence 6777777554444 455799999999999999999998776554 58999999999999999999998887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC-CCCC-----CCccEEEEcCcchhhccC--------------
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLESL-------------- 206 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~-~~~~-----~~~~~vVvDE~h~~~~~~-------------- 206 (423)
++.++.+.......+ . ++|+++||..| +++++.+ .... ..+.++||||+|.++.+.
T Consensus 156 ~i~~~~~~~~r~~~Y--~-~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~ 232 (908)
T PRK13107 156 INVAGLGQQEKKAAY--N-ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDS 232 (908)
T ss_pred EecCCCCHHHHHhcC--C-CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccc
Confidence 999987764332222 2 59999999999 8888766 2232 678899999999886320
Q ss_pred -CcHHHHHHHHHhCC-------------------CCc-------------------------------------------
Q 014486 207 -DMRRDVQEIFKMTP-------------------HDK------------------------------------------- 223 (423)
Q Consensus 207 -~~~~~~~~~~~~~~-------------------~~~------------------------------------------- 223 (423)
.....+..+...+. ...
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~ 312 (908)
T PRK13107 233 SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNA 312 (908)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHH
Confidence 01111111110000 000
Q ss_pred -------------------------------------------------------------------------eEEEEec
Q 014486 224 -------------------------------------------------------------------------QVMMFSA 230 (423)
Q Consensus 224 -------------------------------------------------------------------------~~v~~SA 230 (423)
++.+||+
T Consensus 313 aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTG 392 (908)
T PRK13107 313 ALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTG 392 (908)
T ss_pred HHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccC
Confidence 2344555
Q ss_pred cCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHH
Q 014486 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLL 308 (423)
Q Consensus 231 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L 308 (423)
|...+...+.+.+......+... .+........ .+......|...+.+-+... .+.++||||.+...++.++..|
T Consensus 393 Ta~te~~Ef~~iY~l~Vv~IPTn--kp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L 469 (908)
T PRK13107 393 TADTEAFEFQHIYGLDTVVVPTN--RPMVRKDMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLM 469 (908)
T ss_pred CChHHHHHHHHHhCCCEEECCCC--CCccceeCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHH
Confidence 54444333333333222222111 1111111111 23334455655555544322 5689999999999999999999
Q ss_pred HhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC---------------------------------
Q 014486 309 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE--------------------------------- 355 (423)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~--------------------------------- 355 (423)
...|+++..+|+.++..++..+...|+.|. |+|||++++||+|+.
T Consensus 470 ~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (908)
T PRK13107 470 VKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDE 547 (908)
T ss_pred HHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999988 999999999999986
Q ss_pred ----CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 356 ----RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 356 ----~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+--|||-...+.|-.--.|-.||+||.|.+|..-.|++-.++
T Consensus 548 V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 548 VVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 234688888888888889999999999999999999986444
No 102
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.5e-26 Score=214.64 Aligned_cols=313 Identities=19% Similarity=0.197 Sum_probs=210.9
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCCC-CCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.+.+||+.++.++.. +..+|+..++|.|||.+.+. .+..+..+ .-...+|||||. .+..||..++..|+ |
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiis-FLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~---p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIIS-FLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWW---P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHH-HHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhC---c
Confidence 668999999998875 56699999999999976433 22222222 222378999996 68889988888776 5
Q ss_pred CceEEEEEcCcch---------HHHHHHHh---cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 143 DIKVAVFYGGVNI---------KIHKDLLK---NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 143 ~~~~~~~~~~~~~---------~~~~~~~~---~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
.+++..+++..+. ......+. ..+..|+++|++.+.- ....+.-..+.++|+||.|++.+ . ..
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrN-p--ns 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRN-P--NS 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccC-C--cc
Confidence 6789888886652 11111111 1234799999987753 22234446788999999999976 2 22
Q ss_pred HHHHHHHhCCCCceEEEEeccCCcc-HHHH--------------------------------------------------
Q 014486 211 DVQEIFKMTPHDKQVMMFSATLSKE-IRPV-------------------------------------------------- 239 (423)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~-------------------------------------------------- 239 (423)
.+...++.++ ..+.+.+|+||-.. +..+
T Consensus 355 ~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 3333334443 33456777775110 0000
Q ss_pred --H------------HH-hccCCceee-------------------------ecccc-----------ccccccceEE--
Q 014486 240 --C------------KK-FMQDPMEIY-------------------------VDDEA-----------KLTLHGLVQH-- 266 (423)
Q Consensus 240 --~------------~~-~~~~~~~~~-------------------------~~~~~-----------~~~~~~~~~~-- 266 (423)
+ .. .+....+++ +.... -+..+.+...
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 0 00 000000000 00000 0000000000
Q ss_pred --------E-EEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHH-hCCCCeEEEcCCCCHHHHHHHHHhh
Q 014486 267 --------Y-IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGF 334 (423)
Q Consensus 267 --------~-~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f 334 (423)
+ -......|...+..+++.+ .+.++|+|..++.-.+.+...|. ..++.++.+.|.++...|..+++.|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 0 1223345677777777665 45799999999999999999998 5799999999999999999999999
Q ss_pred hcCCc--cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE
Q 014486 335 KEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (423)
Q Consensus 335 ~~~~~--~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 391 (423)
+++.. -+|++|.+.+-|+|+..++.||.|||.|+|+.-.|+.-|++|.||+..|+++
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 98775 3667999999999999999999999999999999999999999998777654
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=9.7e-27 Score=192.61 Aligned_cols=165 Identities=24% Similarity=0.442 Sum_probs=138.4
Q ss_pred ChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEE
Q 014486 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (423)
||+|.++++.+..++++++.+|||+|||++++++++..+... ...++++++|+++|+.|+.+.+..+... +++++..+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccc-cccccccc
Confidence 689999999999999999999999999999999999887766 3349999999999999999999998876 47889999
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC--CceEEE
Q 014486 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH--DKQVMM 227 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 227 (423)
+++............+.++|+|+||++|...+......+.++++||+||+|.+.. ..+...+..+...+.. ..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~-~~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD-ETFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH-TTHHHHHHHHHHHSHTTTTSEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc-ccHHHHHHHHHHHhcCCCCCcEEE
Confidence 9988766343333344469999999999999988666777799999999999988 4777788888777633 588999
Q ss_pred EeccCCccHH
Q 014486 228 FSATLSKEIR 237 (423)
Q Consensus 228 ~SAT~~~~~~ 237 (423)
+|||+++.+.
T Consensus 158 ~SAT~~~~~~ 167 (169)
T PF00270_consen 158 LSATLPSNVE 167 (169)
T ss_dssp EESSSTHHHH
T ss_pred EeeCCChhHh
Confidence 9999995543
No 104
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=5.1e-25 Score=211.51 Aligned_cols=289 Identities=20% Similarity=0.285 Sum_probs=202.7
Q ss_pred HHHHhC-CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 59 RAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 59 ~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
+.+.+. |+ .|+..|+--...++.|+++-+.||||.|||.-.++..+-....+ .++++|+||..|+.|+++.++.+
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHH
Confidence 333343 55 89999999999999999999999999999975444333333322 29999999999999999999999
Q ss_pred hccCCCceEEE-EEcCcchH---HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc--------
Q 014486 138 STYLPDIKVAV-FYGGVNIK---IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-------- 205 (423)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~-------- 205 (423)
.....+..+.. +|+..... .-...+.++.++|+|+|.+.|...+..- .--+|++|++|++|.++..
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHH
Confidence 86653344444 55554433 3346677888999999998887655532 2247899999999987631
Q ss_pred --CCcHH-----------------------HHHHHHH--------hCCCCceEEEEeccCCccHH--HHHHHhccCCcee
Q 014486 206 --LDMRR-----------------------DVQEIFK--------MTPHDKQVMMFSATLSKEIR--PVCKKFMQDPMEI 250 (423)
Q Consensus 206 --~~~~~-----------------------~~~~~~~--------~~~~~~~~v~~SAT~~~~~~--~~~~~~~~~~~~~ 250 (423)
.+|.. .+.+..+ .-.+..+++..|||..+.-. .+.+..+....
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev-- 304 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV-- 304 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc--
Confidence 11111 0111101 11234579999999865432 23333333211
Q ss_pred eeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcC---hhhHHHHHHHHHhCCCCeEEEcCCCCHHHH
Q 014486 251 YVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS---VSRAAELNKLLVECNFPSICIHSGMSQEER 327 (423)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~---~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 327 (423)
........++...+... .....+.++++.... -.|||++. .+.++++++.|++.|+++..+|+. .
T Consensus 305 ---G~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~ 372 (1187)
T COG1110 305 ---GSGGEGLRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----K 372 (1187)
T ss_pred ---CccchhhhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----c
Confidence 11223334444444443 444566677777764 58999999 999999999999999999999984 3
Q ss_pred HHHHHhhhcCCccEEEEc----CccccCCCCCC-CCEEEEccCCC
Q 014486 328 LTRYKGFKEGNKRILVAT----DLVGRGIDIER-VNIVINYDMPD 367 (423)
Q Consensus 328 ~~~~~~f~~~~~~ili~T----~~~~~Gld~~~-~~~vi~~~~~~ 367 (423)
.+.++.|..|++++||+. ..+-+|+|+|. ++.+|+++.|+
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 667999999999999965 57889999996 88999999883
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.5e-25 Score=218.91 Aligned_cols=307 Identities=17% Similarity=0.183 Sum_probs=216.2
Q ss_pred ChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEE
Q 014486 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (423)
+....+.+..+..++.++|.||||||||......+++.... ...++.+.-|+|--|..+++++.+......+-.|++-
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 34444555566667789999999999999877766666552 2227888889998888888888776554434444433
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHH-HHHHHHhCCCCceEEEE
Q 014486 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMMF 228 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~-~~~~~~~~~~~~~~v~~ 228 (423)
.-..+. .+....|-++|.+.|++.+.... .++.+++||+||+|+-.-+.++.-. +..+....+.+.++|.|
T Consensus 130 iRfe~~-------~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 130 IRFESK-------VSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEeecc-------CCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 221111 12224899999999999777544 4789999999999976543444433 44556667767999999
Q ss_pred eccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC-hH----HHHHHHHHHHHhhcCCcEEEEEcChhhHHH
Q 014486 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EL----EKNRKLNDLLDALDFNQVVIFVKSVSRAAE 303 (423)
Q Consensus 229 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~ 303 (423)
|||+..+ .+..++.+...+.+....- + +..+|.... .. ...............+.+|||.+...+.+.
T Consensus 202 SATld~~---rfs~~f~~apvi~i~GR~f---P-Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 202 SATLDAE---RFSAYFGNAPVIEIEGRTY---P-VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred ecccCHH---HHHHHcCCCCEEEecCCcc---c-eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999854 3344555444444333211 1 111221111 11 122222233333457899999999999999
Q ss_pred HHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC------------
Q 014486 304 LNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------ 367 (423)
Q Consensus 304 l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~------------ 367 (423)
..+.|.+ ....+.++||.++..++.++++--..|..+|+++|+++++++.++++++||+-+..+
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999998 346788899999999999998777777777999999999999999999999755433
Q ss_pred ------CcchhhhcccccCCCCCceEEEEEecC
Q 014486 368 ------SADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 368 ------s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
|-++..||.|||||.+ +|.|+-+|+.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse 386 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTG-PGICYRLYSE 386 (845)
T ss_pred eeEEEechhhhhhhccccccCC-CceEEEecCH
Confidence 6667889999999984 6999999985
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=7e-26 Score=225.15 Aligned_cols=323 Identities=19% Similarity=0.244 Sum_probs=208.6
Q ss_pred CCChhhhhcccccccC---C-ceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAILG---M-DVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~---~-~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
..++.|..++...... + .+++.||||+|||.+.+.++...... .....+++++.|+++++++++++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 3488899888877763 4 68999999999999999988887776 3455599999999999999999999876543
Q ss_pred CceEEEEEcCcchHHHHHH-------------HhcCCCcEEEechHHHHHHHhc-CCCC---CCCccEEEEcCcchhhcc
Q 014486 143 DIKVAVFYGGVNIKIHKDL-------------LKNECPQIVVGTPGRILALARD-KDLS---LKNVRHFILDECDKMLES 205 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ilv~T~~~l~~~~~~-~~~~---~~~~~~vVvDE~h~~~~~ 205 (423)
++.....++.......... ....-..+.++|+......... .... .-..+.+|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 2222212333221111110 0011123444454444431111 1111 012357999999988763
Q ss_pred CCcHHHHHHHHH-hCCCCceEEEEeccCCccHHHHHHHhccCCceeeecccccc--ccccceEE-EEEeChHHHHHHHHH
Q 014486 206 LDMRRDVQEIFK-MTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL--TLHGLVQH-YIKLSELEKNRKLND 281 (423)
Q Consensus 206 ~~~~~~~~~~~~-~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~ 281 (423)
. ....+..+.. ....+.++|++|||+|+.....+.........+........ ........ ...............
T Consensus 354 ~-~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 354 T-MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred c-hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 2 3333333333 33347789999999999999988887776555444322000 00000000 011111100011122
Q ss_pred HHH-hhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhh----cCCccEEEEcCccccCCCCCC
Q 014486 282 LLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 282 ll~-~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~ili~T~~~~~Gld~~~ 356 (423)
... ...+++++|.||++..|..++..|+..+.++..+||.+...+|.+.++... .+...|+|+|++++.|+|+.
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 222 224579999999999999999999998878999999999999988877544 56778999999999999975
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCC--CceEEEEEecCc
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFG--TKGLAITFVSSA 395 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~ 395 (423)
.+.+| .-+..+...+||+||++|.| ..|.++++....
T Consensus 512 fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 44443 44566788999999999999 456666665543
No 107
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1e-25 Score=215.17 Aligned_cols=343 Identities=18% Similarity=0.220 Sum_probs=227.2
Q ss_pred CCCHHHHHHHHhCCCCCCChhhhhcc--cccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 52 LLKPELLRAIVDSGFEHPSEVQHECI--PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 52 ~l~~~~~~~l~~~~~~~~~~~Q~~~i--~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
+++....-..+..|...++.+|.+++ +.++.+++.|...||+.|||+++-+.++.......+ .++.+.|..+.+..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQE 284 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHH
Confidence 33333334444558889999999876 778889999999999999999999988887665544 78999999998888
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEEcCcchhhccCC
Q 014486 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDECDKMLESLD 207 (423)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~~~~~~~~vVvDE~h~~~~~~~ 207 (423)
-...+..+.... |+++-.+.|........+ . -.+.|||-++-..+++.- .-.+..++.|||||.|.+.+ .+
T Consensus 285 k~~~l~~~~~~~-G~~ve~y~g~~~p~~~~k----~-~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d-~~ 357 (1008)
T KOG0950|consen 285 KISALSPFSIDL-GFPVEEYAGRFPPEKRRK----R-ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD-KG 357 (1008)
T ss_pred HHhhhhhhcccc-CCcchhhcccCCCCCccc----c-eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec-cc
Confidence 888888777666 778777776544322211 1 389999999765544321 12346678999999999876 34
Q ss_pred cHHHHHHHH-----HhCCCCceEEEEeccCCccHHHHHHHhccCCceee-eccccccccccceEEEEEeChHHHHHHHHH
Q 014486 208 MRRDVQEIF-----KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY-VDDEAKLTLHGLVQHYIKLSELEKNRKLND 281 (423)
Q Consensus 208 ~~~~~~~~~-----~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (423)
....+..++ .......|+|+||||+++. ..++.++..-.... ..+..-..+...-....... +...+.+
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~---r~~~lr~ 432 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS---RNKVLRE 432 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch---hhHHHHH
Confidence 333333332 2333346899999999863 22333332111111 00000000000001111111 2222222
Q ss_pred HH--------------------Hhhc-CCcEEEEEcChhhHHHHHHHHHh------------------------------
Q 014486 282 LL--------------------DALD-FNQVVIFVKSVSRAAELNKLLVE------------------------------ 310 (423)
Q Consensus 282 ll--------------------~~~~-~~~~ivf~~~~~~~~~l~~~L~~------------------------------ 310 (423)
+- +..+ +.++||||++++.++.++..+..
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 21 1112 24599999999888777644432
Q ss_pred --------CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----ccCCCCcchhhhcccc
Q 014486 311 --------CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDMPDSADTYLHRVGR 378 (423)
Q Consensus 311 --------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~~~~s~~~~~Q~~GR 378 (423)
....+..+|++++..+|..+...|++|.+.|++||+.++.|+|+|..+++|- .....+-.+|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 1234667899999999999999999999999999999999999998887763 2334567789999999
Q ss_pred cCCCCC--ceEEEEEecCcccHHHHHHHHHHH
Q 014486 379 AGRFGT--KGLAITFVSSASDSDILNQVSKFM 408 (423)
Q Consensus 379 ~~R~g~--~~~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
|||+|- .|.+++++.+.+....++.+..-+
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~ 624 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVNSPL 624 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHhccc
Confidence 999975 488999998776665555544433
No 108
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=212.26 Aligned_cols=318 Identities=19% Similarity=0.223 Sum_probs=227.3
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
..+..+...+..+..++.++|.|.||+|||.....-+++....+++..++++-.|+|--|..+++++..--....+-.++
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 55778888888888899999999999999999888888877666666688888899988888888876543332343444
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
+-....+.. .. . ..+++||.+.|++.+.. ...+.++.+||+||+|.-....+|.-.+.+.+-..+++.++|+
T Consensus 253 Yqvrl~~~~-----s~-~-t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 253 YQVRLESKR-----SR-E-TRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred EEEeeeccc-----CC-c-eeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 333322211 11 1 48999999999998876 5567899999999999887767888888777777788999999
Q ss_pred EeccCCccHHHHHHHhccCCceeeeccccc---------------------cccccceEE-----EEEe-ChHHHHHHHH
Q 014486 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAK---------------------LTLHGLVQH-----YIKL-SELEKNRKLN 280 (423)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-----~~~~-~~~~~~~~l~ 280 (423)
||||+..+. ...++.....+.+..... ......... .... ...-....+.
T Consensus 325 MSAT~dae~---fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~ 401 (924)
T KOG0920|consen 325 MSATLDAEL---FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIE 401 (924)
T ss_pred eeeecchHH---HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHH
Confidence 999987432 233333322222111000 000000000 0000 0011223333
Q ss_pred HHHHh----hcCCcEEEEEcChhhHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc
Q 014486 281 DLLDA----LDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (423)
Q Consensus 281 ~ll~~----~~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~ 349 (423)
.++.. ...+.+|||.+..++...+.+.|... .+-+.++|+.++..+++.++...-.|..+|+++|++++
T Consensus 402 ~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 402 DLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 33332 24688999999999999999999652 24567799999999999999988899999999999999
Q ss_pred cCCCCCCCCEEEEcc--------CCC----------CcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 350 RGIDIERVNIVINYD--------MPD----------SADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 350 ~Gld~~~~~~vi~~~--------~~~----------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
.+|.++++-+||+.+ +-. |.....||.|||||. ++|.|+.+++....
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 999999999999644 332 445668999999997 67999999986433
No 109
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.93 E-value=8.6e-25 Score=204.19 Aligned_cols=336 Identities=17% Similarity=0.197 Sum_probs=220.1
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
++.+||.-.++++.- +-++|++.++|.|||.+.+ +.+..+...+.....|||||+..| ..|..++.+| +|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kw---CPs 473 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKW---CPS 473 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHh---CCc
Confidence 578899998887653 4568999999999997643 333333332223367999999876 4455555555 488
Q ss_pred ceEEEEEcCcchHHHHHHHhc---CCCcEEEechHHHHHHH-hcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC
Q 014486 144 IKVAVFYGGVNIKIHKDLLKN---ECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~---~~~~ilv~T~~~l~~~~-~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~ 219 (423)
+++-.++|....+...+.... ..++|+++|+.....-- .+..+.-.+|+++|+||+|.+.+ ....+++.+...-
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN--~~SeRy~~LM~I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN--RTSERYKHLMSIN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc--cchHHHHHhcccc
Confidence 899999998866555443322 36899999997653211 11112235678999999999987 3334444444432
Q ss_pred CCCceEEEEeccCCcc-HHH---HHH------------------------------------------------------
Q 014486 220 PHDKQVMMFSATLSKE-IRP---VCK------------------------------------------------------ 241 (423)
Q Consensus 220 ~~~~~~v~~SAT~~~~-~~~---~~~------------------------------------------------------ 241 (423)
..+.+++|+||-.. +.+ ++.
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44568899996100 000 000
Q ss_pred -Hhcc-CCc---eee-------------------------ecccc-ccc------------cccceEEE-----------
Q 014486 242 -KFMQ-DPM---EIY-------------------------VDDEA-KLT------------LHGLVQHY----------- 267 (423)
Q Consensus 242 -~~~~-~~~---~~~-------------------------~~~~~-~~~------------~~~~~~~~----------- 267 (423)
..+. -|. .+. ..... ... .+.+...+
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 0000 000 000 00000 000 00000000
Q ss_pred ---------------------------------------------EEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhh
Q 014486 268 ---------------------------------------------IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSR 300 (423)
Q Consensus 268 ---------------------------------------------~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~ 300 (423)
..+....|...|..+|... .+.++|||.....-
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 0001223444555555443 35799999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc--cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccc
Q 014486 301 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 378 (423)
Q Consensus 301 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR 378 (423)
.+.+...|.-.++....+.|.+.-..|+.+++.|..++. -.|++|.+++.|||+..+++||.+|...+|..-.|+-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 999999999999999999999999999999999997663 367799999999999999999999999999999999999
Q ss_pred cCCCCCceEEEE--EecC-cccHHHHHHHHHHHhcch
Q 014486 379 AGRFGTKGLAIT--FVSS-ASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 379 ~~R~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~ 412 (423)
|+|.||...|.+ +++. .-+..++...++++.+..
T Consensus 870 cHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~ 906 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEA 906 (941)
T ss_pred HHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhh
Confidence 999999865554 4554 445566666666665443
No 110
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=1.1e-24 Score=212.05 Aligned_cols=337 Identities=18% Similarity=0.232 Sum_probs=225.5
Q ss_pred CCCChhhhhccccccc----CCceEEEccCCCcchhHHH---HHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhc
Q 014486 67 EHPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 139 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (423)
.++|.||-..+++++. ++++|++.++|.|||...+ -.+.....-.+ ..||++|...+ ..|..++..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g---pflvvvplst~-~~W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG---PFLVVVPLSTI-TAWEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC---CeEEEeehhhh-HHHHHHHHHHh-
Confidence 5899999999998876 6889999999999997642 22222221111 46999998665 45677777775
Q ss_pred cCCCceEEEEEcCcchHHHHHH---HhcC-----CCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHH
Q 014486 140 YLPDIKVAVFYGGVNIKIHKDL---LKNE-----CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD 211 (423)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~ 211 (423)
++++.+++|...-+..... +.+. .++++++|++.++. ....+.--.+.++++||||++.+. -...
T Consensus 444 ---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk--Dk~~L~~i~w~~~~vDeahrLkN~--~~~l 516 (1373)
T KOG0384|consen 444 ---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK--DKAELSKIPWRYLLVDEAHRLKND--ESKL 516 (1373)
T ss_pred ---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc--cHhhhccCCcceeeecHHhhcCch--HHHH
Confidence 6799999998765544332 2222 47999999999875 112233346778999999999762 2222
Q ss_pred HHHHHHhCCCCceEEEEeccCCcc-HHHHHHHhc--cCCceeeec-------------------------------cccc
Q 014486 212 VQEIFKMTPHDKQVMMFSATLSKE-IRPVCKKFM--QDPMEIYVD-------------------------------DEAK 257 (423)
Q Consensus 212 ~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~~~~~--~~~~~~~~~-------------------------------~~~~ 257 (423)
+.. +..+.... .+++|+||-.. +..+. .++ ..|..+... ....
T Consensus 517 ~~~-l~~f~~~~-rllitgTPlQNsikEL~-sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 517 YES-LNQFKMNH-RLLITGTPLQNSLKELW-SLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHH-HHHhcccc-eeeecCCCccccHHHHH-HHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 222 33333333 58888997432 22111 111 111111000 0000
Q ss_pred cccccceEEEEEe--------------------------------------------------ChHHH----------HH
Q 014486 258 LTLHGLVQHYIKL--------------------------------------------------SELEK----------NR 277 (423)
Q Consensus 258 ~~~~~~~~~~~~~--------------------------------------------------~~~~~----------~~ 277 (423)
...+.-...++.+ ...++ ..
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 0000000011111 00000 01
Q ss_pred H-------------HHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC---c
Q 014486 278 K-------------LNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---K 339 (423)
Q Consensus 278 ~-------------l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~ 339 (423)
. |..||-.+ .+++||||.+-+.-.+.|.++|..++++.-.+.|.+....|+..++.|+... .
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 1 22222222 4579999999999999999999999999999999999999999999998644 4
Q ss_pred cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEE--EEec-CcccHHHHHHHHHHHhcchhhhh
Q 014486 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVS-SASDSDILNQVSKFMFLLIGSFQ 416 (423)
Q Consensus 340 ~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 416 (423)
.+|+||.+++.|||+..++.||+||..|+|+.-.|+..||+|.||+..|- -|++ ...+.++++...++|++.--=++
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ 833 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQ 833 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHH
Confidence 68899999999999999999999999999999999999999999986554 4455 46678999999999987654444
Q ss_pred hh
Q 014486 417 CL 418 (423)
Q Consensus 417 ~~ 418 (423)
.+
T Consensus 834 ~m 835 (1373)
T KOG0384|consen 834 RM 835 (1373)
T ss_pred hh
Confidence 43
No 111
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=199.23 Aligned_cols=308 Identities=16% Similarity=0.180 Sum_probs=207.2
Q ss_pred ChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEE
Q 014486 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 149 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 149 (423)
+.+-.+.+..+..++-++|.|+||||||.....-+.+.-....+ ++.+..|+|.-|..++.+...-..-.-+-.|++-
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 34445666666677889999999999999866555554444333 5788889998888877777654322112233221
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH-HHHHHHHhCCCCceEEEE
Q 014486 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR-DVQEIFKMTPHDKQVMMF 228 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 228 (423)
.- . ..-......|.+.|-++|++.+-.. -.++++++||+||||.-.-..+..- .++++.+ -++..++|.+
T Consensus 131 IR-----F--ed~ts~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~-~R~~LklIim 201 (674)
T KOG0922|consen 131 IR-----F--EDSTSKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILK-KRPDLKLIIM 201 (674)
T ss_pred EE-----e--cccCCCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 11 0 0111122589999999999855432 3468899999999996532222222 2233322 3446789999
Q ss_pred eccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHH----HHHHHHHHHHhhcCCcEEEEEcChhhHHHH
Q 014486 229 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE----KNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304 (423)
Q Consensus 229 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l 304 (423)
|||+..+ .+..|+.....+.+....-. +...+...+..+ ....+.++....+++-+|||.+.+++.+.+
T Consensus 202 SATlda~---kfS~yF~~a~i~~i~GR~fP----Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 202 SATLDAE---KFSEYFNNAPILTIPGRTFP----VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred eeeecHH---HHHHHhcCCceEeecCCCCc----eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 9999843 44455555433443332111 111222222222 223445555556778999999999999999
Q ss_pred HHHHHhC----C--C--CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC-----------
Q 014486 305 NKLLVEC----N--F--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM----------- 365 (423)
Q Consensus 305 ~~~L~~~----~--~--~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~----------- 365 (423)
.+.|.+. + . -+.++||.++..++.+++..-..|..+|+++|++++..+.++++..||+-+.
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9998775 1 1 2467999999999999988877899999999999999999999999996543
Q ss_pred -------CCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 366 -------PDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 366 -------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
|-|..+..||.|||||.| +|.|+-+|+..+
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 337778899999999985 699999998543
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.6e-24 Score=206.27 Aligned_cols=313 Identities=20% Similarity=0.241 Sum_probs=208.4
Q ss_pred CCChhhhhcccccccC----CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.+++-|+.++..+... +..++.|.||||||.+|+-.+...+..++ .+|+++|-++|..|+.++++... +
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF----g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF----G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh----C
Confidence 5678899999888765 45999999999999999887777776554 89999999999999999998776 4
Q ss_pred ceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc----CCcHHHHHHHH
Q 014486 144 IKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----LDMRRDVQEIF 216 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~---~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~----~~~~~~~~~~~ 216 (423)
.++.+++++.+..+.... ..++..+|+|+|...++ ..+.++++||+||=|.-.-. ..+...-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 688899998876655444 45577899999998876 47889999999999965321 12223333334
Q ss_pred HhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccc-cccccceEEEEEeChHHH----HHHHHHHH-Hhh-cCC
Q 014486 217 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELEK----NRKLNDLL-DAL-DFN 289 (423)
Q Consensus 217 ~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~l~~ll-~~~-~~~ 289 (423)
+....+.++|+-|||+.-+....+.. +....+.+..... ...+.+....+....... ...+.+.+ +.+ .++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 44445778999999987554443322 1111122211111 111111111111111111 02222222 222 345
Q ss_pred cEEEEEcChhh------------------------------------------------------------HHHHHHHHH
Q 014486 290 QVVIFVKSVSR------------------------------------------------------------AAELNKLLV 309 (423)
Q Consensus 290 ~~ivf~~~~~~------------------------------------------------------------~~~l~~~L~ 309 (423)
++|+|.|.+-. .+++.+.|+
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 67777665332 244445554
Q ss_pred hC--CCCeEEEcCCCCHH--HHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC------------Ccchhh
Q 014486 310 EC--NFPSICIHSGMSQE--ERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYL 373 (423)
Q Consensus 310 ~~--~~~~~~~~~~~~~~--~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~------------s~~~~~ 373 (423)
+. +.++..+.++++.. .-...+..|.+|+.+|||.|++++.|.|+|+++.|...+... ....+.
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~ 581 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLM 581 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHH
Confidence 43 45677777776543 346679999999999999999999999999999977655322 344578
Q ss_pred hcccccCCCCCceEEEEEecCcc
Q 014486 374 HRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 374 Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
|..||+||.+.+|.+++-....+
T Consensus 582 QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 582 QVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHhhhccCCCCCeEEEEeCCCC
Confidence 99999999999999987665433
No 113
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.93 E-value=1.9e-23 Score=200.16 Aligned_cols=316 Identities=16% Similarity=0.142 Sum_probs=204.1
Q ss_pred CCChhhhhccccccc---C-------CceEEEccCCCcchhHHHHHHhhccCCCCC----CeEEEEEecChHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL---G-------MDVICQAKSGMGKTAVFVLSTLQQTEPNPG----QVTALVLCHTRELAYQICHE 133 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~---~-------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~ 133 (423)
.++|||++++.-+.. | ..+|++..+|+|||+..+..+...+...+. -.++|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 789999999976654 2 348999999999999765444444333332 1388999996 799999999
Q ss_pred HHHHhccCCCceEEEEEcCcch--HHHHHHH----hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC
Q 014486 134 FERFSTYLPDIKVAVFYGGVNI--KIHKDLL----KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (423)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~ 207 (423)
|.+|.... .+....+++..+. -.....+ ..-..-|++.+++.+....+. +....++++|+||.|+..+
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN--- 390 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN--- 390 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc---
Confidence 99997643 6777777777653 1111111 111236888899988765543 4456789999999998865
Q ss_pred cHHHHHHHHHhCCCCceEEEEeccCCc-c---------------------------------------------------
Q 014486 208 MRRDVQEIFKMTPHDKQVMMFSATLSK-E--------------------------------------------------- 235 (423)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~-~--------------------------------------------------- 235 (423)
....+...+..+. ..+.|++|+||-. +
T Consensus 391 ~~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 391 SDSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred hhhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 3333444444443 3457889999610 0
Q ss_pred HHHHHHHhcc------------CCceeee--ccc------------c--c-----------------ccccc--------
Q 014486 236 IRPVCKKFMQ------------DPMEIYV--DDE------------A--K-----------------LTLHG-------- 262 (423)
Q Consensus 236 ~~~~~~~~~~------------~~~~~~~--~~~------------~--~-----------------~~~~~-------- 262 (423)
+..+...+.. ...++.+ ... . . ...+.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 1111111110 0000000 000 0 0 00000
Q ss_pred -----------------ceEEEEEeChHHHHHHHHHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 263 -----------------LVQHYIKLSELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 263 -----------------~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
............+...+..++... ...++++..+.....+.+.+.++.+|+.++.++|.+
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 000000111123344444444222 223455555666667777777777899999999999
Q ss_pred CHHHHHHHHHhhhcCCc--c-EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE
Q 014486 323 SQEERLTRYKGFKEGNK--R-ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (423)
Q Consensus 323 ~~~~r~~~~~~f~~~~~--~-ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 391 (423)
+..+|+.+++.|++... . +|.+|.+.+.||++-+++.||.+|+.|+|+.-.|+++|+.|.||+..|+++
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999997543 3 555789999999999999999999999999999999999999999887764
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.92 E-value=7.7e-23 Score=201.46 Aligned_cols=299 Identities=16% Similarity=0.175 Sum_probs=180.6
Q ss_pred CCChhhhhccccccc----------CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
-++++|..++..+.. .+.++++++||||||++++..+...+ .....+++|+|+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 478899988877643 24699999999999998765544433 3334459999999999999999999887
Q ss_pred hccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCc-cEEEEcCcchhhccCCcHHHHHH
Q 014486 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNV-RHFILDECDKMLESLDMRRDVQE 214 (423)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~~~~~~-~~vVvDE~h~~~~~~~~~~~~~~ 214 (423)
.... . .+..+.......+......|+|+|.++|...+... ....... .+||+||||+.-. ..+..
T Consensus 317 ~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-----~~~~~ 384 (667)
T TIGR00348 317 QKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-----GELAK 384 (667)
T ss_pred CCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-----hHHHH
Confidence 5321 1 11122233334444444589999999998643321 1111112 2799999997533 22333
Q ss_pred HH-HhCCCCceEEEEeccCCccHHH-HHHHhc---cCCceeeeccccccccccceEE-EEE------e------------
Q 014486 215 IF-KMTPHDKQVMMFSATLSKEIRP-VCKKFM---QDPMEIYVDDEAKLTLHGLVQH-YIK------L------------ 270 (423)
Q Consensus 215 ~~-~~~~~~~~~v~~SAT~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~------~------------ 270 (423)
.+ ..++ +...+++||||-..... ....+. +.+...+. -............ +.. .
T Consensus 385 ~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~-~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~ 462 (667)
T TIGR00348 385 NLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYF-ITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEI 462 (667)
T ss_pred HHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEee-HHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHH
Confidence 33 3444 56799999999542111 001111 11111100 0000000000000 000 0
Q ss_pred --------ChH-------------------HHHHHH-HHHHHhh------cCCcEEEEEcChhhHHHHHHHHHhC-----
Q 014486 271 --------SEL-------------------EKNRKL-NDLLDAL------DFNQVVIFVKSVSRAAELNKLLVEC----- 311 (423)
Q Consensus 271 --------~~~-------------------~~~~~l-~~ll~~~------~~~~~ivf~~~~~~~~~l~~~L~~~----- 311 (423)
.+. .....+ ..+++.. .+.+.+|||.++.+|..+++.|.+.
T Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~ 542 (667)
T TIGR00348 463 FELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF 542 (667)
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc
Confidence 000 000111 1111111 2479999999999999999988664
Q ss_pred CCCeEEEcCCCCHH---------------------HHHHHHHhhhc-CCccEEEEcCccccCCCCCCCCEEEEccCCCCc
Q 014486 312 NFPSICIHSGMSQE---------------------ERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSA 369 (423)
Q Consensus 312 ~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~ 369 (423)
+...+.+++..+.. ....++++|++ +..+|||+++++.+|+|.|.+++++...+..+.
T Consensus 543 ~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h 622 (667)
T TIGR00348 543 EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH 622 (667)
T ss_pred CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc
Confidence 23445565543322 22467888876 678999999999999999999999998887764
Q ss_pred chhhhcccccCCC
Q 014486 370 DTYLHRVGRAGRF 382 (423)
Q Consensus 370 ~~~~Q~~GR~~R~ 382 (423)
.++|++||+.|.
T Consensus 623 -~LlQai~R~nR~ 634 (667)
T TIGR00348 623 -GLLQAIARTNRI 634 (667)
T ss_pred -HHHHHHHHhccc
Confidence 589999999993
No 115
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.92 E-value=5.8e-24 Score=201.17 Aligned_cols=310 Identities=18% Similarity=0.220 Sum_probs=198.2
Q ss_pred CCChhhhhccccccc----CC-ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAIL----GM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.+|+||..||..+.. |+ .+++.+.||+|||.+++. ++.++...+...++|+|+.+++|+.|.+..+..+.....
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 789999999977654 43 399999999999998754 555554444444999999999999999988887764421
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-----CCCCCCccEEEEcCcchhhccCCcHHHHHHHHH
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-----~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~ 217 (423)
....+.+. ... +.++|.++|++++....... .+....|++||+||||+ +.......++.
T Consensus 244 --~~n~i~~~-~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-----gi~~~~~~I~d 307 (875)
T COG4096 244 --KMNKIEDK-KGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-----GIYSEWSSILD 307 (875)
T ss_pred --ceeeeecc-cCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-----hHHhhhHHHHH
Confidence 22222221 111 12599999999999877654 23456699999999995 44455556666
Q ss_pred hCCCCceEEEEeccCCccHHHHHHHhc-cCCceee--------------------ec--ccc----------ccccccc-
Q 014486 218 MTPHDKQVMMFSATLSKEIRPVCKKFM-QDPMEIY--------------------VD--DEA----------KLTLHGL- 263 (423)
Q Consensus 218 ~~~~~~~~v~~SAT~~~~~~~~~~~~~-~~~~~~~--------------------~~--~~~----------~~~~~~~- 263 (423)
.+..-. +++||||........-.++ +.|...+ +. ..+ ......+
T Consensus 308 YFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 654333 4559998764332222222 2222221 00 000 0000000
Q ss_pred -eEEEEEeCh-----------HHHHHHHHHHHHh--hc--CCcEEEEEcChhhHHHHHHHHHhCC-----CCeEEEcCCC
Q 014486 264 -VQHYIKLSE-----------LEKNRKLNDLLDA--LD--FNQVVIFVKSVSRAAELNKLLVECN-----FPSICIHSGM 322 (423)
Q Consensus 264 -~~~~~~~~~-----------~~~~~~l~~ll~~--~~--~~~~ivf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~ 322 (423)
........+ ..-...+.+.++. .. .+|+||||.+..||+.+...|.... --+..+.++.
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 000000000 0011233444444 11 4699999999999999999998752 2244566664
Q ss_pred CHHHHHHHHHhhhcC--CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC-------CCceEEEEEec
Q 014486 323 SQEERLTRYKGFKEG--NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-------GTKGLAITFVS 393 (423)
Q Consensus 323 ~~~~r~~~~~~f~~~--~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-------g~~~~~~~~~~ 393 (423)
... +..++.|... -.+|.|+.+++.+|+|+|.|.+++++....|...|.|++||+-|. +++..-+.+++
T Consensus 466 ~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifD 543 (875)
T COG4096 466 EQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFD 543 (875)
T ss_pred hhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEE
Confidence 443 3447777652 246888999999999999999999999999999999999999993 23345556665
Q ss_pred CcccH
Q 014486 394 SASDS 398 (423)
Q Consensus 394 ~~~~~ 398 (423)
.....
T Consensus 544 f~~~~ 548 (875)
T COG4096 544 FVDNT 548 (875)
T ss_pred hhhhh
Confidence 44443
No 116
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.8e-25 Score=195.57 Aligned_cols=301 Identities=19% Similarity=0.190 Sum_probs=200.2
Q ss_pred CCCCChhhhhcccccccC---CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 66 FEHPSEVQHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
-..+||||.+++..+.-+ ++.+|..|+|+|||++.+-++..... .||++|.+...++||..++..|....
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK------~clvLcts~VSVeQWkqQfk~wsti~- 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKK------SCLVLCTSAVSVEQWKQQFKQWSTIQ- 372 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecc------cEEEEecCccCHHHHHHHHHhhcccC-
Confidence 348899999999998864 56999999999999876543333322 89999999999999999999987664
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--------CCCCCccEEEEcCcchhhccCCcHHHHHH
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--------LSLKNVRHFILDECDKMLESLDMRRDVQE 214 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--------~~~~~~~~vVvDE~h~~~~~~~~~~~~~~ 214 (423)
+-.+..++.+... ....+ ..|+|+|+.++..--++.. +.-..++++++||+|.+-. ..|++.+.-
T Consensus 373 d~~i~rFTsd~Ke-----~~~~~-~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MFRRVlsi 445 (776)
T KOG1123|consen 373 DDQICRFTSDAKE-----RFPSG-AGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMFRRVLSI 445 (776)
T ss_pred ccceEEeeccccc-----cCCCC-CcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHHHHHHHH
Confidence 4467777665321 12223 5899999988754221110 1235688999999998866 556666655
Q ss_pred HHHhCCCCceEEEEeccCCccHHHHHHH-hccCCcee----------------eecc-------------ccccccccce
Q 014486 215 IFKMTPHDKQVMMFSATLSKEIRPVCKK-FMQDPMEI----------------YVDD-------------EAKLTLHGLV 264 (423)
Q Consensus 215 ~~~~~~~~~~~v~~SAT~~~~~~~~~~~-~~~~~~~~----------------~~~~-------------~~~~~~~~~~ 264 (423)
+...+ .+++|||+-++-..+... |+..|..+ .... ........
T Consensus 446 v~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr-- 518 (776)
T KOG1123|consen 446 VQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR-- 518 (776)
T ss_pred HHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh--
Confidence 55544 489999985543221111 11111100 0000 00000111
Q ss_pred EEEEEeChHHHH---HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhc-CCcc
Q 014486 265 QHYIKLSELEKN---RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE-GNKR 340 (423)
Q Consensus 265 ~~~~~~~~~~~~---~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~ 340 (423)
....+....|. ..|.++.+. ++.|+|||..+.-....++-.|.+ -.++|.+++.+|..+++.|+- ..++
T Consensus 519 -~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 519 -MLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred -heeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccc
Confidence 11222233333 344444444 678999999998777776665543 357899999999999999984 5678
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCC-CCcchhhhcccccCCCC---CceEEEEEecC
Q 014486 341 ILVATDLVGRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFG---TKGLAITFVSS 394 (423)
Q Consensus 341 ili~T~~~~~Gld~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g---~~~~~~~~~~~ 394 (423)
.++.+.++...+|+|.++++|+...- .|-.+-.||+||.-|+. ..+....||+-
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSL 649 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSL 649 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 99999999999999999999987654 35667889999998853 23444455543
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.7e-23 Score=203.81 Aligned_cols=128 Identities=22% Similarity=0.301 Sum_probs=112.0
Q ss_pred EEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc
Q 014486 268 IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345 (423)
Q Consensus 268 ~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T 345 (423)
+......|...+.+.+... .+.++||||++++.++.+...|...|+++..+|+ .+.+|+..+..|..+...|+|||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIAT 653 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIAT 653 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEec
Confidence 3345566778888887554 6789999999999999999999999999999997 57899999999999999999999
Q ss_pred CccccCCCCC---CCC-----EEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 346 DLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 346 ~~~~~Gld~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
++++||+|++ .+. +||.+..|.|...+.|+.||+||.|.+|.+..|++..++
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999998 443 458889999999999999999999999999999986443
No 118
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.91 E-value=5.5e-23 Score=182.78 Aligned_cols=327 Identities=14% Similarity=0.188 Sum_probs=218.6
Q ss_pred CCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 68 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
.+-|+|++.+...+. |..++++.++|.|||++++. +........ ..||+||. .+-..|++.+.+|..... .+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEw---plliVcPA-svrftWa~al~r~lps~~--pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEW---PLLIVCPA-SVRFTWAKALNRFLPSIH--PI 270 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcC---cEEEEecH-HHhHHHHHHHHHhccccc--ce
Confidence 567999999987776 67799999999999998753 444444333 56999997 577889999999886642 24
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
.++.++.+... .+... ..|.|.+++.+..+-.. +.-..+++||+||+|.+.+ .-......+...+..-..+|
T Consensus 271 ~vv~~~~D~~~---~~~t~-~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 271 FVVDKSSDPLP---DVCTS-NTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EEEecccCCcc---ccccC-CeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhc--cchhhhhhhhhHHHHhhheE
Confidence 44444432211 11112 37899999988664432 2224578999999999976 44444566666666667799
Q ss_pred EEeccCC----cc---------------HHHHHHHhccC-Cceeeeccc--------------------------ccccc
Q 014486 227 MFSATLS----KE---------------IRPVCKKFMQD-PMEIYVDDE--------------------------AKLTL 260 (423)
Q Consensus 227 ~~SAT~~----~~---------------~~~~~~~~~~~-~~~~~~~~~--------------------------~~~~~ 260 (423)
++|+|+. .+ ...+...++.. ...+..+.. ...+
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP- 421 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLP- 421 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCC-
Confidence 9999973 21 12222222221 111110000 0001
Q ss_pred ccceEEEEEeCh---------------------H----------------HHHHHHHHHHHh------hcCCcEEEEEcC
Q 014486 261 HGLVQHYIKLSE---------------------L----------------EKNRKLNDLLDA------LDFNQVVIFVKS 297 (423)
Q Consensus 261 ~~~~~~~~~~~~---------------------~----------------~~~~~l~~ll~~------~~~~~~ivf~~~ 297 (423)
++...-.+.... . .|...+.+.+.. .++.|.+||+..
T Consensus 422 pKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 422 PKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred ccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 110111111100 0 011122222222 145689999999
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcC-CccEE-EEcCccccCCCCCCCCEEEEccCCCCcchhhhc
Q 014486 298 VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRIL-VATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375 (423)
Q Consensus 298 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~il-i~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~ 375 (423)
..-.+.+...+.++++..+.+.|.++...|....+.|..+ +..|- ++..+++.|+++...+.|++..++|+|.-++|+
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 9999999999999999999999999999999999999864 44544 466889999999999999999999999999999
Q ss_pred ccccCCCCCceEEEE--EecC-cccHHHHHHHHHHHhc
Q 014486 376 VGRAGRFGTKGLAIT--FVSS-ASDSDILNQVSKFMFL 410 (423)
Q Consensus 376 ~GR~~R~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 410 (423)
-.|++|.||+..|.+ |+.. ..++.++..+.+++..
T Consensus 582 EDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~v 619 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDV 619 (689)
T ss_pred hhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHH
Confidence 999999999865544 4443 4456778888888764
No 119
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.8e-23 Score=194.16 Aligned_cols=310 Identities=20% Similarity=0.193 Sum_probs=200.6
Q ss_pred hhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC---CCeEEEEEecChHHHHHHHHHHHHHhccCC-CceEEEE
Q 014486 74 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVF 149 (423)
Q Consensus 74 ~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~ 149 (423)
++++.++..+.-+||||.||||||.+...-+.+.-.... .+..+=|.-|+|.-|..++++...-...++ .+....-
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 344455555666999999999999986655555432221 222667778999888877776654433321 1111111
Q ss_pred EcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC----CcHHHHHHHHHhCCC----
Q 014486 150 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL----DMRRDVQEIFKMTPH---- 221 (423)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~----~~~~~~~~~~~~~~~---- 221 (423)
+.++ .+....|.++|-+.|++-+.+ .+.+..++.||+||||.-.-.. +...++..+.....+
T Consensus 342 fd~t---------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 342 FDGT---------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred eccc---------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 2221 122358999999999987764 5667889999999999654221 223333333333333
Q ss_pred --CceEEEEeccCCccHHHHHHHhcc-CCceeeeccccccccccceEEEEEeCh----HHHHHHHHHHHHhhcCCcEEEE
Q 014486 222 --DKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSE----LEKNRKLNDLLDALDFNQVVIF 294 (423)
Q Consensus 222 --~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ll~~~~~~~~ivf 294 (423)
..++|.||||+.-.-..--+.++. .|..+.++. ..++- ..++-.-.. .+.......+.+.++.+.+|||
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA---RQfPV-sIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA---RQFPV-SIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeec---ccCce-EEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 567999999986332211112222 222222221 11111 112211111 1233456677788899999999
Q ss_pred EcChhhHHHHHHHHHhC---------------------------------------------------------------
Q 014486 295 VKSVSRAAELNKLLVEC--------------------------------------------------------------- 311 (423)
Q Consensus 295 ~~~~~~~~~l~~~L~~~--------------------------------------------------------------- 311 (423)
+..+.+++.+.+.|+++
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 99999999999999771
Q ss_pred ------------------------------------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCC
Q 014486 312 ------------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE 355 (423)
Q Consensus 312 ------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~ 355 (423)
..-++++++-++...+.++++.--.|..-++|+|+++++.+.+|
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 12255677777788888888877788888999999999999999
Q ss_pred CCCEEEEccCCC------------------CcchhhhcccccCCCCCceEEEEEecCcccH
Q 014486 356 RVNIVINYDMPD------------------SADTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 356 ~~~~vi~~~~~~------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
++++||..+..+ |-...-||+|||||.| +|.|+-+|++.-..
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~ 707 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS 707 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh
Confidence 999999766433 4445579999999986 69999999864443
No 120
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.91 E-value=3.7e-23 Score=201.06 Aligned_cols=328 Identities=16% Similarity=0.217 Sum_probs=214.5
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhh-ccCCC-----CCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQ-QTEPN-----PGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~-~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.+|.||++.+.++.. +-++|+|..+|.|||++.+-.+.. +.... -.....||+||+ .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 568999999998765 457999999999999986433332 22221 022237999996 7999999999888
Q ss_pred hccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHH
Q 014486 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (423)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~ 217 (423)
... +++..+.|+...+...+.-.+. .+|+|++++.+.+-+.. +.-.++.++|+||-|.+.+ ....+.+..+
T Consensus 1054 ~pf---L~v~~yvg~p~~r~~lR~q~~~-~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN---~ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF---LKVLQYVGPPAERRELRDQYKN-ANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKN---SKTKLTKAVK 1124 (1549)
T ss_pred cch---hhhhhhcCChHHHHHHHhhccc-cceEEeeHHHHHHHHHH--HHhcccceEEecCcceecc---hHHHHHHHHH
Confidence 754 6888888876555444333333 49999999988642211 1124577999999999854 4566666666
Q ss_pred hCCCCceEEEEeccCCcc-H------------------------------------------------------------
Q 014486 218 MTPHDKQVMMFSATLSKE-I------------------------------------------------------------ 236 (423)
Q Consensus 218 ~~~~~~~~v~~SAT~~~~-~------------------------------------------------------------ 236 (423)
.+.... .+.+|+||-.. +
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 666555 56788995100 0
Q ss_pred ----------------------------HHHHHHhccCCc-eeee-ccccccccc--------------cceEE--EE--
Q 014486 237 ----------------------------RPVCKKFMQDPM-EIYV-DDEAKLTLH--------------GLVQH--YI-- 268 (423)
Q Consensus 237 ----------------------------~~~~~~~~~~~~-~~~~-~~~~~~~~~--------------~~~~~--~~-- 268 (423)
..+.+.+..... .+.. .+....... +...+ .+
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 000000000000 0000 000000000 00000 00
Q ss_pred ---------------------EeChHHHHHHHHHHHHhh----------------cCCcEEEEEcChhhHHHHHHHHHhC
Q 014486 269 ---------------------KLSELEKNRKLNDLLDAL----------------DFNQVVIFVKSVSRAAELNKLLVEC 311 (423)
Q Consensus 269 ---------------------~~~~~~~~~~l~~ll~~~----------------~~~~~ivf~~~~~~~~~l~~~L~~~ 311 (423)
......|...+.+++... .+++++|||+-+..++.+.+.|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 011223455666666443 2358999999999999998888665
Q ss_pred CC---CeEEEcCCCCHHHHHHHHHhhhcC-CccEEE-EcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCce
Q 014486 312 NF---PSICIHSGMSQEERLTRYKGFKEG-NKRILV-ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG 386 (423)
Q Consensus 312 ~~---~~~~~~~~~~~~~r~~~~~~f~~~-~~~ili-~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~ 386 (423)
-+ ....+.|..++.+|.++.++|+++ .+++|+ +|.+++.|+|+.+++.||+++-.|+|..-.|++.||+|.||+.
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 33 344789999999999999999998 678776 7899999999999999999999999999999999999999986
Q ss_pred EEEE--EecCcccHHHHHHHHH
Q 014486 387 LAIT--FVSSASDSDILNQVSK 406 (423)
Q Consensus 387 ~~~~--~~~~~~~~~~~~~~~~ 406 (423)
.|-+ +++-.--.+.++.+++
T Consensus 1444 vVNVyRlItrGTLEEKVMgLQk 1465 (1549)
T KOG0392|consen 1444 VVNVYRLITRGTLEEKVMGLQK 1465 (1549)
T ss_pred eeeeeeehhcccHHHHHhhHHH
Confidence 5443 4444333344444444
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=1e-21 Score=199.62 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=211.5
Q ss_pred HHHHHHHHhCCCCCCChhhhhccc----ccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 55 PELLRAIVDSGFEHPSEVQHECIP----QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~Q~~~i~----~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
+...+.+...||+ +|+.|.+.+. .+..++++++.||||+|||++|++|++.... .+ .+++|.+||++|..|+
T Consensus 233 ~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~--~~vvi~t~t~~Lq~Ql 308 (850)
T TIGR01407 233 SLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TE--KPVVISTNTKVLQSQL 308 (850)
T ss_pred HHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CC--CeEEEEeCcHHHHHHH
Confidence 4666777777885 8999997555 5556788999999999999999999988766 22 2899999999999998
Q ss_pred HH-HHHHHhccCC-CceEEEEEcCcchH---------------HH--------------------------------HHH
Q 014486 131 CH-EFERFSTYLP-DIKVAVFYGGVNIK---------------IH--------------------------------KDL 161 (423)
Q Consensus 131 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~--------------------------------~~~ 161 (423)
.. .+..+....+ .+++..+.|+.+.- .. ...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~ 388 (850)
T TIGR01407 309 LEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQ 388 (850)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHH
Confidence 65 4555543331 36777777654220 00 000
Q ss_pred Hh-----------------------cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc------CCc----
Q 014486 162 LK-----------------------NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM---- 208 (423)
Q Consensus 162 ~~-----------------------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~------~~~---- 208 (423)
+. ....+|+|+++..|+..+.....-+....++||||||++.+. ..+
T Consensus 389 i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~ 468 (850)
T TIGR01407 389 VRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYAD 468 (850)
T ss_pred hhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHH
Confidence 00 012579999999888765443333466689999999987521 000
Q ss_pred -HH----------------------------------------------------------------HHHHHHH------
Q 014486 209 -RR----------------------------------------------------------------DVQEIFK------ 217 (423)
Q Consensus 209 -~~----------------------------------------------------------------~~~~~~~------ 217 (423)
.. .+.....
T Consensus 469 ~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 548 (850)
T TIGR01407 469 IKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDF 548 (850)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 00 0000000
Q ss_pred -----h----------C---------------------------CCCceEEEEeccCCcc-HHHHHHHhccCC-ce-eee
Q 014486 218 -----M----------T---------------------------PHDKQVMMFSATLSKE-IRPVCKKFMQDP-ME-IYV 252 (423)
Q Consensus 218 -----~----------~---------------------------~~~~~~v~~SAT~~~~-~~~~~~~~~~~~-~~-~~~ 252 (423)
. . +....+|++|||+... -.......++-. .. ...
T Consensus 549 ~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~ 628 (850)
T TIGR01407 549 KNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTI 628 (850)
T ss_pred HHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcccccee
Confidence 0 0 0112688999999742 123333333321 11 111
Q ss_pred ccccccccccceEEEEE--eC------hHHHHH----HHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC----CCCeE
Q 014486 253 DDEAKLTLHGLVQHYIK--LS------ELEKNR----KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC----NFPSI 316 (423)
Q Consensus 253 ~~~~~~~~~~~~~~~~~--~~------~~~~~~----~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~ 316 (423)
. +....+......++. .+ ...-.. .+.+++.. .++++|||+++.+..+.+++.|... +++
T Consensus 629 ~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-- 704 (850)
T TIGR01407 629 E-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-- 704 (850)
T ss_pred c-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--
Confidence 1 111111111111111 11 111112 22233333 4578999999999999999999752 333
Q ss_pred EEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCC--EEEEccCCCC--------------------------
Q 014486 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN--IVINYDMPDS-------------------------- 368 (423)
Q Consensus 317 ~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~--~vi~~~~~~s-------------------------- 368 (423)
.+..+.. ..|..+++.|++++..||++|+.+.+|+|+++.. +||...+|..
T Consensus 705 ~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 705 VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 2333333 5788899999999999999999999999999855 5777776642
Q ss_pred ----cchhhhcccccCCCCCceEEEEEecCccc-HHHHHHHHHHH
Q 014486 369 ----ADTYLHRVGRAGRFGTKGLAITFVSSASD-SDILNQVSKFM 408 (423)
Q Consensus 369 ----~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-~~~~~~~~~~~ 408 (423)
...+.|.+||+.|..++..++++.+.... ..+.+.+-+.+
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 12357999999999888778888876533 23334444443
No 122
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.1e-23 Score=188.93 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=210.2
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
...+++-.+.+.++..++-+||.|.||||||.+...-+.+.-...++ .++-+..|+|.-|..++.+..+-. +.+.
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~g-k~IgcTQPRRVAAmSVAaRVA~EM----gvkL 338 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGG-KKIGCTQPRRVAAMSVAARVAEEM----GVKL 338 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCC-ceEeecCcchHHHHHHHHHHHHHh----Cccc
Confidence 35566667777777778889999999999999865545554443333 357788899999999887776543 2222
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
+.-.| .+++.+.. .+...-+=++|-++|++-+.. ...+..+++|||||||.-.-..+..-.+.+-...+++..+++
T Consensus 339 G~eVG-YsIRFEdc--TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 339 GHEVG-YSIRFEDC--TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred ccccc-eEEEeccc--cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 22111 11111111 011236778999999885443 345788999999999965432333323333334456788999
Q ss_pred EEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHH----HHHHhhcCCcEEEEEcChhhHH
Q 014486 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN----DLLDALDFNQVVIFVKSVSRAA 302 (423)
Q Consensus 227 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~~~~~~~ivf~~~~~~~~ 302 (423)
..|||+..+ ....|+.+...+.+... .. .+..+|-..++.+-..... .+....+.+-+|||....++..
T Consensus 415 IsSAT~DAe---kFS~fFDdapIF~iPGR-Ry---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 415 ISSATMDAE---KFSAFFDDAPIFRIPGR-RY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred eeccccCHH---HHHHhccCCcEEeccCc-cc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 999999854 34456655544444322 11 1122333344444333222 2223336688999999999888
Q ss_pred HHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC--------
Q 014486 303 ELNKLLVEC---------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-------- 365 (423)
Q Consensus 303 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~-------- 365 (423)
...+.|.++ .+-++++|++++...+..+++---+|..+|++||+++++.+.++++.+||+-+.
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 777776553 345778999999999999988888888999999999999999999999996443
Q ss_pred ----------CCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 366 ----------PDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 366 ----------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
|-|.+...||.|||||.| +|.|+-+|+..
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 336677889999999986 69999999853
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4e-22 Score=189.14 Aligned_cols=316 Identities=19% Similarity=0.185 Sum_probs=218.9
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|++.|--+.-.+++| -+..+.||.|||+++.+|++.....+. .+.+++|+.-||.|-++++..+...+ ++
T Consensus 76 g~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~L-GL 148 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEAL-GL 148 (764)
T ss_pred CC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 44 7899999888777765 578999999999999999888776554 78999999999999999999998887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcCC------CCCCCccEEEEcCcchhhcc------------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~-~~~~~~~------~~~~~~~~vVvDE~h~~~~~------------ 205 (423)
++..+.++.+.......+ . .+|+++|...|- ++++.+. .....+.++||||+|.++-+
T Consensus 149 svg~i~~~~~~~err~aY-~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~ 225 (764)
T PRK12326 149 TVGWITEESTPEERRAAY-A--CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGST 225 (764)
T ss_pred EEEEECCCCCHHHHHHHH-c--CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCC
Confidence 999998887755444444 3 499999997652 2333222 22356889999999987621
Q ss_pred --CCcHHHHHHHHHhCCCC--------c----------------------------------------------------
Q 014486 206 --LDMRRDVQEIFKMTPHD--------K---------------------------------------------------- 223 (423)
Q Consensus 206 --~~~~~~~~~~~~~~~~~--------~---------------------------------------------------- 223 (423)
......+..+...+... .
T Consensus 226 ~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYi 305 (764)
T PRK12326 226 PGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYI 305 (764)
T ss_pred cchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 00111111111111110 0
Q ss_pred ----------------------------------------------------------eEEEEeccCCccHHHHHHHhcc
Q 014486 224 ----------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQ 245 (423)
Q Consensus 224 ----------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~ 245 (423)
++.+||+|.......+.+.+..
T Consensus 306 V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l 385 (764)
T PRK12326 306 VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDL 385 (764)
T ss_pred EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCC
Confidence 4566777766555544444433
Q ss_pred CCceeeeccccccccccceEEEEEeChHHHHHHHHHHH-Hh-hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 246 DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
... .++...+........ .+......|...+.+-+ +. ..+.|+||.|.+++.++.++..|.+.|++..+++..-.
T Consensus 386 ~Vv--~IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVS--VIPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEE--ECCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 322 222222222222222 23334455555554444 33 25689999999999999999999999999999998754
Q ss_pred HHHHHHHHHhhhcCC-ccEEEEcCccccCCCCC---------------CCCEEEEccCCCCcchhhhcccccCCCCCceE
Q 014486 324 QEERLTRYKGFKEGN-KRILVATDLVGRGIDIE---------------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387 (423)
Q Consensus 324 ~~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~---------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~ 387 (423)
..+ ..++.. .|+ ..|.|||++++||.|+. +--|||....+.|-.--.|-.||+||.|.+|.
T Consensus 463 ~~E-A~IIa~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEE-ARIIAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhH-HHHHHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 333 333332 343 45999999999999986 33479999999999999999999999999999
Q ss_pred EEEEecCcc
Q 014486 388 AITFVSSAS 396 (423)
Q Consensus 388 ~~~~~~~~~ 396 (423)
.-.|++-.+
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998543
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=3e-21 Score=187.96 Aligned_cols=130 Identities=20% Similarity=0.320 Sum_probs=111.2
Q ss_pred HHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCC
Q 014486 276 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (423)
Q Consensus 276 ~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld 353 (423)
...+...+... .+.++||||++...++.+.+.|.+.|+++..+|++++..+|.++++.|+.|+++|||||+.+++|+|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfD 507 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 507 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCee
Confidence 33444444332 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcc-----CCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHH
Q 014486 354 IERVNIVINYD-----MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKF 407 (423)
Q Consensus 354 ~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 407 (423)
+|++++||+++ .|.+...|+||+||+||. ..|.++++++. ....+...|.+.
T Consensus 508 iP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~-~~~~~~~ai~~~ 564 (655)
T TIGR00631 508 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADK-ITDSMQKAIEET 564 (655)
T ss_pred eCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcC-CCHHHHHHHHHH
Confidence 99999999988 799999999999999998 57899888874 444444544443
No 125
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.2e-21 Score=180.42 Aligned_cols=309 Identities=16% Similarity=0.171 Sum_probs=198.8
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.....+.+.+.-+..++-++|.++||||||.+...-+++.-....+ .+-+..|.|.-|..++.+..+-....-+-.++
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 3445555555556667779999999999999865555554443332 55666799999999888876544221121221
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
+ .++ .......+..|=+.|-+.|++-.-. ...+..+++||+||||.-.-+.+..-.+.+....-+.+.++|.
T Consensus 434 Y-----sIR--FEdvT~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 434 Y-----SIR--FEDVTSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred e-----EEE--eeecCCCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 1 111 1111122247888899888762221 2346788999999999765433433333333333455788999
Q ss_pred EeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHH-HHHH---HHHhhcCCcEEEEEcChhhHHH
Q 014486 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-KLND---LLDALDFNQVVIFVKSVSRAAE 303 (423)
Q Consensus 228 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~---ll~~~~~~~~ivf~~~~~~~~~ 303 (423)
+|||+... .+..|+++...+.+....- + +...+...+..+-.. .+.. +....+.+-+|||.+..+..+.
T Consensus 506 tSATm~a~---kf~nfFgn~p~f~IpGRTy---P-V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~ 578 (1042)
T KOG0924|consen 506 TSATMDAQ---KFSNFFGNCPQFTIPGRTY---P-VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIEC 578 (1042)
T ss_pred eeccccHH---HHHHHhCCCceeeecCCcc---c-eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhH
Confidence 99999843 3445555444444433221 1 111122222222111 1111 1122355789999998887655
Q ss_pred HHHHHHh----C------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC--------
Q 014486 304 LNKLLVE----C------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-------- 365 (423)
Q Consensus 304 l~~~L~~----~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~-------- 365 (423)
....++. . ++.++.+++.++..-+.++++.-..|..+++|||+++++.+.++++.+||..+.
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~ 658 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNP 658 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccc
Confidence 5444433 1 577889999999999999988777888999999999999999999999997654
Q ss_pred ----------CCCcchhhhcccccCCCCCceEEEEEecC
Q 014486 366 ----------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 366 ----------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
|-|-...-||.|||||.| +|.|+-+|+.
T Consensus 659 ~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 659 RIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 336667789999999986 6899999885
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=5.4e-21 Score=185.93 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=213.4
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|++.|--+--.+ .+.-|..+.||+|||+++.+|++.....+. .+.+++|+.-||.|-++++..+...+ ++++.
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~ 155 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFL-GLSVG 155 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEE
Confidence 6777777654433 456899999999999999999987766554 78999999999999999999999887 89999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCcchhhcc---------------
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES--------------- 205 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~~~~~vVvDE~h~~~~~--------------- 205 (423)
++.++.+.......+. .+|+++|..-| +++++... .-...+.++||||+|.++-+
T Consensus 156 ~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~ 232 (913)
T PRK13103 156 IVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDS 232 (913)
T ss_pred EECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccc
Confidence 9988776655554444 49999999876 33343321 12377899999999987621
Q ss_pred CCcHHHHHHHHHhCCC--------------------Cc------------------------------------------
Q 014486 206 LDMRRDVQEIFKMTPH--------------------DK------------------------------------------ 223 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------------------~~------------------------------------------ 223 (423)
......+..+...+.. ..
T Consensus 233 ~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~ 312 (913)
T PRK13103 233 SKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYA 312 (913)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHH
Confidence 0001111111111100 00
Q ss_pred -------------------------------------------------------------------------eEEEEec
Q 014486 224 -------------------------------------------------------------------------QVMMFSA 230 (423)
Q Consensus 224 -------------------------------------------------------------------------~~v~~SA 230 (423)
++.+||+
T Consensus 313 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTG 392 (913)
T PRK13103 313 GLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTG 392 (913)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCC
Confidence 3444555
Q ss_pred cCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHH
Q 014486 231 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLL 308 (423)
Q Consensus 231 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L 308 (423)
|...+...+.+.+......+.. ..+........ .+......|...+.+-+... .+.|+||-+.+++.++.+++.|
T Consensus 393 Ta~te~~Ef~~iY~l~Vv~IPT--nkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L 469 (913)
T PRK13103 393 TADTEAFEFRQIYGLDVVVIPP--NKPLARKDFND-LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLL 469 (913)
T ss_pred CCHHHHHHHHHHhCCCEEECCC--CCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHH
Confidence 5544444443333333222222 11112222222 23344556665555544432 5689999999999999999999
Q ss_pred HhCCCCeEEEcCCCCHHHHHHHHHhhhcCC-ccEEEEcCccccCCCCC--------------------------------
Q 014486 309 VECNFPSICIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIE-------------------------------- 355 (423)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~-------------------------------- 355 (423)
+..|++.-+++......+- .++. ..|. ..|.|||++++||.|+.
T Consensus 470 ~~~gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e 546 (913)
T PRK13103 470 KKEGIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQ 546 (913)
T ss_pred HHcCCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHH
Confidence 9999998888887553332 3333 3443 46999999999999984
Q ss_pred -----CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 356 -----RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 356 -----~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+--|||-...+.|-.--.|-.||+||.|.+|..-.|++-.++
T Consensus 547 ~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 547 QVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 334788888999998899999999999999999999986433
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.87 E-value=1.4e-20 Score=160.16 Aligned_cols=185 Identities=35% Similarity=0.513 Sum_probs=147.9
Q ss_pred CCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 64 SGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.++.+|+++|.++++.+... +.+++.+|||+|||.++..+++......... +++|++|+..++.|+.+.+..+....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~- 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGK-RVLVLVPTRELAEQWAEELKKLGPSL- 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCC-cEEEEeCCHHHHHHHHHHHHHHhccC-
Confidence 45678999999999999998 9999999999999999888888877765433 89999999999999999998876543
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~ 222 (423)
........++.........+.++..+++++|++.+.............++++|+||+|.+.. ..+...+..+...+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~ 160 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD-GGFGDQLEKLLKLLPKN 160 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc-CCcHHHHHHHHHhCCcc
Confidence 22333444444434444555555459999999999998887776778899999999999976 36778888888888788
Q ss_pred ceEEEEeccCCccHHHHHHHhccCCceee
Q 014486 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (423)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (423)
.+++++|||++.........+......+.
T Consensus 161 ~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 161 VQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred ceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 99999999999888887777776554443
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=8.7e-20 Score=179.29 Aligned_cols=134 Identities=20% Similarity=0.287 Sum_probs=113.3
Q ss_pred HHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCC
Q 014486 277 RKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 354 (423)
Q Consensus 277 ~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~ 354 (423)
..+...+... .+.++||||++...++.+.+.|.+.|+++..+|+++++.+|..++..|+.|++.|+|||+.+++|+|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 3444444333 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccC-----CCCcchhhhcccccCCCCCceEEEEEecCc--------ccHHHHHHHHHHHhcc
Q 014486 355 ERVNIVINYDM-----PDSADTYLHRVGRAGRFGTKGLAITFVSSA--------SDSDILNQVSKFMFLL 411 (423)
Q Consensus 355 ~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 411 (423)
|++++||+++. |.+...|+||+||+||. ..|.+++|++.. .+......++..++..
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 581 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEE 581 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999998874 78999999999999996 689999998742 3445555555555543
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.4e-20 Score=176.71 Aligned_cols=316 Identities=18% Similarity=0.225 Sum_probs=213.0
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ +|++.|--+--.+..| -|..+.||-|||+++.+|+......+. .+-|++...-||..=++++..+...+ |+
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fL-GL 148 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFL-GL 148 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHh-CC
Confidence 44 7888887776555544 589999999999999998877666554 57788888999999999999888887 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCcchhhcc------------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES------------ 205 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~~~~~vVvDE~h~~~~~------------ 205 (423)
++++...+.........+. .+|+++|...| +++++.+. .-...+.+.||||+|.++-+
T Consensus 149 svG~i~~~~~~~~rr~aY~---~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 149 SVGINKANMDPNLKREAYA---CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred ceeeeCCCCChHHHHHhcc---CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 9999887766555444442 49999999876 33554332 12466889999999987621
Q ss_pred ---CCcHHHHHHHHHhCCC-------Cc----------------------------------------------------
Q 014486 206 ---LDMRRDVQEIFKMTPH-------DK---------------------------------------------------- 223 (423)
Q Consensus 206 ---~~~~~~~~~~~~~~~~-------~~---------------------------------------------------- 223 (423)
.........+...+.. ..
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 0011111122211111 00
Q ss_pred ---------------------------------------------------------eEEEEeccCCccHHHHHHHhccC
Q 014486 224 ---------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQD 246 (423)
Q Consensus 224 ---------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~~ 246 (423)
++.+||+|...+...+.+.+...
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~ 385 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMR 385 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCC
Confidence 34556666555444444433333
Q ss_pred CceeeeccccccccccceEEEEEeChHHHHHHHHHHHHh-h-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCH
Q 014486 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-L-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 324 (423)
...+... .+........ .+......|...+.+-+.. + .+.|+||.|.+++.++.++..|.+.|++..+++.....
T Consensus 386 Vv~IPTn--kP~~R~D~~d-~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e 462 (925)
T PRK12903 386 VNVVPTN--KPVIRKDEPD-SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA 462 (925)
T ss_pred EEECCCC--CCeeeeeCCC-cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh
Confidence 3222221 1111111111 2334455566555554432 2 56799999999999999999999999999999987443
Q ss_pred HHHHHHHHhhhcCC-ccEEEEcCccccCCCCCCC--------CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 325 EERLTRYKGFKEGN-KRILVATDLVGRGIDIERV--------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 325 ~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
.+ ..++. ..|. ..|.|||++++||.|+.-- -|||....+.|-.--.|..||+||.|.+|..-.|++-.
T Consensus 463 ~E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 463 RE-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hH-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 32 22332 3453 4699999999999999632 28999999998888899999999999999999998854
Q ss_pred c
Q 014486 396 S 396 (423)
Q Consensus 396 ~ 396 (423)
+
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 3
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.86 E-value=3.1e-22 Score=188.92 Aligned_cols=327 Identities=16% Similarity=0.171 Sum_probs=192.3
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC----CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.|+.+.. ..+..+|.-..-..|||||+.|+.+.+.+ ...=+.+.+|+|||++.+- +.+.+.. .++|+++|
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvP 214 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVP 214 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecc
Confidence 3554443 34445555555668999999999988874 2244555699999998754 4444443 38999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchH-----------------------HHHHHH-hcCCCcEEEechHHHH
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK-----------------------IHKDLL-KNECPQIVVGTPGRIL 178 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~~ilv~T~~~l~ 178 (423)
+.+|..|..+++..-.. . .+....++++.... ...... ....--|+++|++++.
T Consensus 215 SIsLLsQTlrew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 215 SISLLSQTLREWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred hHHHHHHHHHHHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999997666543211 1 34444444433221 111111 1122469999999998
Q ss_pred HHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC-----CCceEEEEeccCCccHHH---HH----------
Q 014486 179 ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-----HDKQVMMFSATLSKEIRP---VC---------- 240 (423)
Q Consensus 179 ~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~SAT~~~~~~~---~~---------- 240 (423)
..-+.....+..|++||+||||+..+- .....-...+.... +..+.+.|||||.--... .+
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa-~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM 371 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGA-TLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM 371 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccc-eecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc
Confidence 877777778889999999999987652 22211111111111 123567899997321111 00
Q ss_pred --------------------HHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH-------Hhh-------
Q 014486 241 --------------------KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-------DAL------- 286 (423)
Q Consensus 241 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-------~~~------- 286 (423)
+..+.+...+.+.....................-.......++ ++.
T Consensus 372 DDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~ 451 (1518)
T COG4889 372 DDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLK 451 (1518)
T ss_pred chhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 0111111111110000000000000000000000111111111 111
Q ss_pred -------cCCcEEEEEcChhhHHHHHHHHHh-------------CCC--CeEEEcCCCCHHHHHHHHH---hhhcCCccE
Q 014486 287 -------DFNQVVIFVKSVSRAAELNKLLVE-------------CNF--PSICIHSGMSQEERLTRYK---GFKEGNKRI 341 (423)
Q Consensus 287 -------~~~~~ivf~~~~~~~~~l~~~L~~-------------~~~--~~~~~~~~~~~~~r~~~~~---~f~~~~~~i 341 (423)
+..+.|-||.++++.+.+++.+.. .++ .+..+.|.|+..+|...+. .|...+++|
T Consensus 452 ~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI 531 (1518)
T COG4889 452 NIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI 531 (1518)
T ss_pred CCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee
Confidence 113578999999888777665533 133 3445678999999855543 345677889
Q ss_pred EEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC
Q 014486 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (423)
Q Consensus 342 li~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (423)
|--..++++|+|+|.++.||++++..++.+.+|.+||++|-
T Consensus 532 lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 532 LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 98899999999999999999999999999999999999994
No 131
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=166.79 Aligned_cols=318 Identities=15% Similarity=0.183 Sum_probs=208.4
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
...|...+.++...+.|++..-...+.++.+.+..+..++-+++.|+||||||.....+.+........ .+....|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCchH
Confidence 456889999999999998875556666666777777778889999999999999887777766554442 566777999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--------CCCCCccEEEE
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--------LSLKNVRHFIL 196 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--------~~~~~~~~vVv 196 (423)
.-|.+++.+...-. +++.+.-.|- +++. --.++|..++++...+. -.+..+++||+
T Consensus 102 vaamsva~RVadEM----Dv~lG~EVGy-sIrf-----------EdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiL 165 (699)
T KOG0925|consen 102 VAAMSVAQRVADEM----DVTLGEEVGY-SIRF-----------EDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIIL 165 (699)
T ss_pred HHHHHHHHHHHHHh----ccccchhccc-cccc-----------cccCChhHHHHHhcchHHHHHHhhCcccccccEEEe
Confidence 98888887665543 3443333331 1111 11234444444333221 23678999999
Q ss_pred cCcchhhccCCc-HHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHH
Q 014486 197 DECDKMLESLDM-RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (423)
Q Consensus 197 DE~h~~~~~~~~-~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (423)
||||.-.-..+. ...+..+...- ++.++|.+|||+.. ..++.++.++..+.+.... + ....|...++.+.
T Consensus 166 DeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~--P---vEi~Yt~e~erDy 236 (699)
T KOG0925|consen 166 DEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGTH--P---VEIFYTPEPERDY 236 (699)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCCC--c---eEEEecCCCChhH
Confidence 999965321222 22334444443 58899999999864 3556666666555554311 1 1112222233333
Q ss_pred HH----HHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC---------CCCeEEEcCCCCHHHHHHHHHhhh---cC--
Q 014486 276 NR----KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------NFPSICIHSGMSQEERLTRYKGFK---EG-- 337 (423)
Q Consensus 276 ~~----~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~~-- 337 (423)
.+ .+.++.....++-++||....++.+...+.+... ...++++| +.+..++++--. +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 33 3344444446788999999999988888877643 24566777 344444433222 12
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEccC------------------CCCcchhhhcccccCCCCCceEEEEEecC
Q 014486 338 NKRILVATDLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 338 ~~~ili~T~~~~~Gld~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
..+|+|+|++++..+.++++.+||.-+. |-|..+..||.||+||. .+|+|+.+|+.
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 2479999999999999999999996442 45777889999999996 67999999984
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=4.4e-19 Score=159.94 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=124.0
Q ss_pred CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhh-cCCcEEEEEcChhh
Q 014486 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSR 300 (423)
Q Consensus 222 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~ 300 (423)
..|+|++||||.+.-..... ....+-.+.+.+-..+. + .+......-...+.++-... .+.+++|-+-+++-
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~-i---evRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPE-I---EVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCc-e---eeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 35899999999865433211 12222223332221111 1 11111112222333333222 35799999999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC-----CCCcchhhhc
Q 014486 301 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-----PDSADTYLHR 375 (423)
Q Consensus 301 ~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~-----~~s~~~~~Q~ 375 (423)
|+.+.++|.+.|+++..+|+++..-+|.++++..+.|..+|||+-+.+-+|+|+|-|..|..+|. .+|-.+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988774 5688999999
Q ss_pred ccccCCCCCceEEEEEecCcccHHHHHHH
Q 014486 376 VGRAGRFGTKGLAITFVSSASDSDILNQV 404 (423)
Q Consensus 376 ~GR~~R~g~~~~~~~~~~~~~~~~~~~~~ 404 (423)
+|||.|. -.|.|+++.+ .....+..+|
T Consensus 539 IGRAARN-~~GkvIlYAD-~iT~sM~~Ai 565 (663)
T COG0556 539 IGRAARN-VNGKVILYAD-KITDSMQKAI 565 (663)
T ss_pred HHHHhhc-cCCeEEEEch-hhhHHHHHHH
Confidence 9999995 4577876654 4444444444
No 133
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.85 E-value=2.4e-19 Score=173.63 Aligned_cols=116 Identities=21% Similarity=0.263 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc--cEEEEcCcccc
Q 014486 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK--RILVATDLVGR 350 (423)
Q Consensus 275 ~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~ili~T~~~~~ 350 (423)
|...|.-||..+ .++++|||+.-..-.+.+...|..+|+-++.+.|.+.-++|+..+++|+.+.. ..+++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 334444444433 45789999999999999999999999999999999999999999999998763 57779999999
Q ss_pred CCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEE
Q 014486 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390 (423)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~ 390 (423)
|||+.+++.||+||..|++.=-.|+..||+|.|+...+.+
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHI 1380 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 1380 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEE
Confidence 9999999999999999999999999999999999876654
No 134
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=5.6e-21 Score=183.15 Aligned_cols=316 Identities=17% Similarity=0.186 Sum_probs=207.5
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.+++||...+.++.. +-+.|++.+||.|||.+.+-.+...+........-||+||+..|.. |..++.. +.|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~k---WaPS 469 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPK---WAPS 469 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccc---cccc
Confidence 889999999988775 3459999999999998766555544444333335699999998866 4444544 4477
Q ss_pred ceEEEEEcCcchHHH-HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC
Q 014486 144 IKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~ 222 (423)
+....+.|....+.. ...+..+.++|+++|++.+.. ....+.--++.++||||.|++.+. ...+...+.-....
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa---~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA---ICKLTDTLNTHYRA 544 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch---hhHHHHHhhccccc
Confidence 788888876544322 234445778999999998765 222223356778999999999752 22222222212223
Q ss_pred ceEEEEeccCCcc----HHHHHHH--------------------------------------------------------
Q 014486 223 KQVMMFSATLSKE----IRPVCKK-------------------------------------------------------- 242 (423)
Q Consensus 223 ~~~v~~SAT~~~~----~~~~~~~-------------------------------------------------------- 242 (423)
...+++|+|+-.. +..++..
T Consensus 545 q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 3345566664100 0000000
Q ss_pred ---hccCCcee-----------------------eecc-ccc----------------cccccce----EEE-------E
Q 014486 243 ---FMQDPMEI-----------------------YVDD-EAK----------------LTLHGLV----QHY-------I 268 (423)
Q Consensus 243 ---~~~~~~~~-----------------------~~~~-~~~----------------~~~~~~~----~~~-------~ 268 (423)
.+...... .++. ... +..+.+. ..+ .
T Consensus 625 VE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 625 VEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred HhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 00000000 0000 000 0000000 000 0
Q ss_pred EeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc---cEEE
Q 014486 269 KLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RILV 343 (423)
Q Consensus 269 ~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~ili 343 (423)
.+....|...+..++-.+ .+++++.||.-......+..+|.-.++....+.|.+...+|...++.|+.... .+|.
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 011123444455554333 35899999999999999999999999999999999999999999999997654 4677
Q ss_pred EcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEe
Q 014486 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392 (423)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~ 392 (423)
+|.+.+.|+|+..++.||.||..|+|....|+..|++|.|+...|-++.
T Consensus 785 stragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 785 STRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999999987666654
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=1.2e-18 Score=174.90 Aligned_cols=332 Identities=17% Similarity=0.185 Sum_probs=199.5
Q ss_pred CCCCCCChhhhhcccc----cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH-HHHHHHHh
Q 014486 64 SGFEHPSEVQHECIPQ----AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFS 138 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~----~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~~~~~~ 138 (423)
.|| .+|+-|.+-... +..++.+++.|+||+|||++|++|++.... +.+++|++||++|+.|+ .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~----~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSD----QRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcC----CCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 355 689999874333 333677999999999999999999887642 23899999999999999 46676665
Q ss_pred ccCCCceEEEEEcCcchHHH-----------------------------------------------HHHHh--------
Q 014486 139 TYLPDIKVAVFYGGVNIKIH-----------------------------------------------KDLLK-------- 163 (423)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~-------- 163 (423)
... ++++..+.|+.+.-.. +..+.
T Consensus 317 ~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 317 EVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred Hhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 554 5677766665431100 00000
Q ss_pred ---------------cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc------CCc-----HH-------
Q 014486 164 ---------------NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------LDM-----RR------- 210 (423)
Q Consensus 164 ---------------~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~------~~~-----~~------- 210 (423)
....+|+|++...|+..+.... .+...+++||||||++.+- ..+ ..
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 0125799999998887654332 3577899999999987531 000 00
Q ss_pred -------------------------------------------HH-----------HHHHHh------------------
Q 014486 211 -------------------------------------------DV-----------QEIFKM------------------ 218 (423)
Q Consensus 211 -------------------------------------------~~-----------~~~~~~------------------ 218 (423)
.+ ..++..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 00 000000
Q ss_pred ---------------CCCCceEEEEeccCC--ccHHHHHHHhccCCceeeeccccccccccceEEEE--EeC------hH
Q 014486 219 ---------------TPHDKQVMMFSATLS--KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI--KLS------EL 273 (423)
Q Consensus 219 ---------------~~~~~~~v~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~ 273 (423)
++....+|++|||++ +.. .+...+....... ...+ ..+......+. ..+ ..
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~-~~~~--~~~~~~~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLF-HKIE--KDKKQDQLVVVDQDMPLVTETSDE 630 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccce-ecCC--CChHHccEEEeCCCCCCCCCCChH
Confidence 011126789999996 222 2332222211111 0000 01111111111 011 11
Q ss_pred HHHHHHHHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccC
Q 014486 274 EKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (423)
Q Consensus 274 ~~~~~l~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~G 351 (423)
.-...+.+.+.. ..+++++|+++|.+..+.+++.|.....+. ...|... .+..++++|++++..||++|..+.+|
T Consensus 631 ~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 631 VYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 111222222211 246899999999999999999997665444 3333222 24567999999888899999999999
Q ss_pred CCCCC--CCEEEEccCCCC------------------------------cchhhhcccccCCCCCceEEEEEecCccc-H
Q 014486 352 IDIER--VNIVINYDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSASD-S 398 (423)
Q Consensus 352 ld~~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-~ 398 (423)
+|+|+ ...||...+|.. .-.+.|.+||.-|...+..+++++++.-. .
T Consensus 708 VD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k 787 (820)
T PRK07246 708 VDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTK 787 (820)
T ss_pred CCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCccccc
Confidence 99974 556777776641 22457999999999887777888876532 3
Q ss_pred HHHHHHHHHHh
Q 014486 399 DILNQVSKFMF 409 (423)
Q Consensus 399 ~~~~~~~~~~~ 409 (423)
.+.+.+-+-+.
T Consensus 788 ~Yg~~~l~sLP 798 (820)
T PRK07246 788 SYGKQILASLA 798 (820)
T ss_pred HHHHHHHHhCC
Confidence 33444444443
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=173.00 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=107.8
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc-eE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI-KV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~ 146 (423)
-|-.+|++.+..+=.+.+++|.|||.+|||++...++=..+.....+ .++++.|+.+|+.|+...+....... .+ ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~-t~~rg 588 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTK-TFLRG 588 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccC-ccccc
Confidence 57788999999888899999999999999998766555555554444 89999999999999887776543111 11 11
Q ss_pred EEEEcCcchHHHHHHHhcC--CCcEEEechHHHHHHHhc---CCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC
Q 014486 147 AVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARD---KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~--~~~ilv~T~~~l~~~~~~---~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~ 221 (423)
..+.|... +.+.-. ..+|+|+-|+.+-.++.. ..-....+++||+||+|.+.+ ..-...+..+....
T Consensus 589 ~sl~g~lt-----qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~-~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 589 VSLLGDLT-----QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN-EEDGLLWEQLLLLI-- 660 (1330)
T ss_pred hhhHhhhh-----HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc-cccchHHHHHHHhc--
Confidence 11122111 111111 249999999999887766 334457899999999999876 33333333333333
Q ss_pred CceEEEEeccCCc
Q 014486 222 DKQVMMFSATLSK 234 (423)
Q Consensus 222 ~~~~v~~SAT~~~ 234 (423)
.++++.+|||..+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 3568999999754
No 137
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.83 E-value=1.2e-18 Score=168.92 Aligned_cols=276 Identities=20% Similarity=0.202 Sum_probs=178.7
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ +|++.|--+.-. -.+.-|+.+.||.|||+++.+|+......+. .+.|++++..||.+-++++..+...+ ++
T Consensus 74 G~-r~ydvQlig~l~--L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~---~VhVvT~NdyLA~RD~e~m~pvy~~L-GL 146 (870)
T CHL00122 74 GL-RHFDVQLIGGLV--LNDGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHIVTVNDYLAKRDQEWMGQIYRFL-GL 146 (870)
T ss_pred CC-CCCchHhhhhHh--hcCCccccccCCCCchHHHHHHHHHHHhcCC---ceEEEeCCHHHHHHHHHHHHHHHHHc-CC
Confidence 44 578888766543 3566899999999999999999876555433 78999999999999999999998888 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHH-HHHhcCC------CCCCCccEEEEcCcchhhccC-----------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKD------LSLKNVRHFILDECDKMLESL----------- 206 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~-~~~~~~~------~~~~~~~~vVvDE~h~~~~~~----------- 206 (423)
+++++.++.+.......+. .+|+++|...|- ++++.+. .....+.++||||+|.++-+.
T Consensus 147 svg~i~~~~~~~err~aY~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYL---KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred ceeeeCCCCChHHHHHhcC---CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 9999988777665544443 399999997552 3443322 124568899999999876110
Q ss_pred ----CcHHHHHHHHHhCCC-------------------------------------------------------C-----
Q 014486 207 ----DMRRDVQEIFKMTPH-------------------------------------------------------D----- 222 (423)
Q Consensus 207 ----~~~~~~~~~~~~~~~-------------------------------------------------------~----- 222 (423)
........+.+.+.. +
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000001111111100 0
Q ss_pred --------------------------------------------------------ceEEEEeccCCccHHHHHHHhccC
Q 014486 223 --------------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQD 246 (423)
Q Consensus 223 --------------------------------------------------------~~~v~~SAT~~~~~~~~~~~~~~~ 246 (423)
.++.+||+|...+...+.+.+...
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 046677777765544444433333
Q ss_pred CceeeeccccccccccceEEEEEeChHHHHHHHHHH-HHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCH
Q 014486 247 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL-LDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 324 (423)
... ++...+....... ..+......|...+.+- ...+ .+.|+||-|.+++..+.+++.|...|++..+++.....
T Consensus 384 vv~--IPtnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVC--IPTHRPMLRKDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEE--CCCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 322 2222222222222 22333444555544443 3332 56899999999999999999999999999999987432
Q ss_pred -HHHHHHHHhhhcCC-ccEEEEcCccccCCCCC
Q 014486 325 -EERLTRYKGFKEGN-KRILVATDLVGRGIDIE 355 (423)
Q Consensus 325 -~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~ 355 (423)
..-..++.. .|. ..|.|||++++||.|+.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 333344433 344 46999999999999973
No 138
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.83 E-value=8.5e-20 Score=169.00 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc-cEEEEcCccccC
Q 014486 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRG 351 (423)
Q Consensus 275 ~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~ili~T~~~~~G 351 (423)
|...+..+|..+ .++++|+|++-.+-.+.+.++|..+++....+.|.....+|..+++.|....+ -+|++|.+.+.|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 344455555444 45789999999999999999999999999999999999999999999998665 466799999999
Q ss_pred CCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEE
Q 014486 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390 (423)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~ 390 (423)
||+..++.||+|+..|+|.--.|++.||+|.||...|.+
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 999999999999999999999999999999999876554
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=2.7e-17 Score=157.91 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcC----CccEEEEcCccccCCCC
Q 014486 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG----NKRILVATDLVGRGIDI 354 (423)
Q Consensus 279 l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~ili~T~~~~~Gld~ 354 (423)
+..++.. ..+.++|.+.+...++.+++.|...---.+.+.|..+ .+...++.|++. ...||++|..+.+|+|+
T Consensus 462 ~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 462 TAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 3444433 4578999999999999999999764223344455432 345678888864 67899999999999999
Q ss_pred --------C--CCCEEEEccCCCCc-------------------------chhhhcccccCCCCCc--eEEEEEecCccc
Q 014486 355 --------E--RVNIVINYDMPDSA-------------------------DTYLHRVGRAGRFGTK--GLAITFVSSASD 397 (423)
Q Consensus 355 --------~--~~~~vi~~~~~~s~-------------------------~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~ 397 (423)
| .+++||+..+|..+ -.+.|.+||.-|...+ ..++.+.++...
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~ 618 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIH 618 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCC
Confidence 3 38899988887422 2457999999998887 778888887644
Q ss_pred HHHHHHHHH
Q 014486 398 SDILNQVSK 406 (423)
Q Consensus 398 ~~~~~~~~~ 406 (423)
..+...+.+
T Consensus 619 ~~yg~~~~~ 627 (636)
T TIGR03117 619 WPYMESWQE 627 (636)
T ss_pred chhHHHHHH
Confidence 444444433
No 140
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.82 E-value=9.7e-19 Score=155.99 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=98.4
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC-cc-EEEEcCccccCCCCCCCCEEEEcc
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KR-ILVATDLVGRGIDIERVNIVINYD 364 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-ili~T~~~~~Gld~~~~~~vi~~~ 364 (423)
..-|.|||.+...-.+-+.-.|.+.|+.++.+.|+|++..|...++.|.++- +. +|++-.+.+.-+|+..+.+|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 3457899999999999999999999999999999999999999999999754 44 455669999999999999999999
Q ss_pred CCCCcchhhhcccccCCCCCc--eEEEEEecCcccHHHHHHHHH
Q 014486 365 MPDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVSK 406 (423)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~--~~~~~~~~~~~~~~~~~~~~~ 406 (423)
|-|++.--.|...|.+|.||. -.++-|+-...-...+-.+++
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQe 760 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQE 760 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHH
Confidence 999999999999999999975 455555544333333333333
No 141
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.82 E-value=4.7e-19 Score=139.88 Aligned_cols=118 Identities=45% Similarity=0.634 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhhc--CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccC
Q 014486 274 EKNRKLNDLLDALD--FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 351 (423)
Q Consensus 274 ~~~~~l~~ll~~~~--~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~G 351 (423)
.+...+..++.... .+++||||++...++.+.+.|.+.+.++..+|++++..+|..+++.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777777663 7899999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE
Q 014486 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (423)
Q Consensus 352 ld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 391 (423)
+|+|.+++||++++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887653
No 142
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.5e-18 Score=160.89 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhc--CCccE-EEEcCcc
Q 014486 275 KNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE--GNKRI-LVATDLV 348 (423)
Q Consensus 275 ~~~~l~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~i-li~T~~~ 348 (423)
|...+.+.++.. ...+++|.....+....+...+++.|.....++|.....+|+.+++.|+. |..+| |++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 444444444443 45788999888888899999999999999999999999999999999975 33344 4566889
Q ss_pred ccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEE
Q 014486 349 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 390 (423)
Q Consensus 349 ~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~ 390 (423)
+.|+|+-+.+|+|.+|+-|+|+--.|++.|..|.||+..|++
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999999999999999999999999999999999988775
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=2.9e-17 Score=167.92 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=91.4
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC--CCEEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNIVIN 362 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~--~~~vi~ 362 (423)
.+++++|++++.+..+.+++.|..... ....+..+++...|..+++.|++++..||++|..+.+|+|+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457899999999999999999976432 1233344444456788999999888889999999999999997 578998
Q ss_pred ccCCCC-c-----------------------------chhhhcccccCCCCCceEEEEEecCccc-HHHHHHHHHHHh
Q 014486 363 YDMPDS-A-----------------------------DTYLHRVGRAGRFGTKGLAITFVSSASD-SDILNQVSKFMF 409 (423)
Q Consensus 363 ~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ 409 (423)
..+|.. | -.+.|.+||+-|..++..++++.++.-. ..+.+.+-+.+.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 887751 1 2346999999999888778888876533 334444444443
No 144
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=157.24 Aligned_cols=281 Identities=18% Similarity=0.224 Sum_probs=183.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
.+-++-+|||.||||.- +++++...+ ..++.-|.+-||.++++++++. ++.+..++|.........
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC--
Confidence 34578889999999975 455655554 5699999999999999998876 788888888543222111
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~ 242 (423)
...++.+-||.++.. --..+.+.|+||.+.+.+...=.+..+.++........++ +- +.+.++.+.
T Consensus 257 -~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---Ge--psvldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---GE--PSVLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---CC--chHHHHHHH
Confidence 123577788877653 1245679999999998764322233334444333332222 11 223344443
Q ss_pred hccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCC-eEEEcCC
Q 014486 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSG 321 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~ 321 (423)
.+...-.- ..+..|....+..-...+..-++++.++-+|| |-+++....+...+.+.+.. +.+++|.
T Consensus 323 i~k~TGd~-----------vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 323 ILKMTGDD-----------VEVREYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred HHhhcCCe-----------eEEEeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 33211100 00112222221111123334445556566555 44567788888888877655 9999999
Q ss_pred CCHHHHHHHHHhhhc--CCccEEEEcCccccCCCCCCCCEEEEccCC---------CCcchhhhcccccCCCCC---ceE
Q 014486 322 MSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMP---------DSADTYLHRVGRAGRFGT---KGL 387 (423)
Q Consensus 322 ~~~~~r~~~~~~f~~--~~~~ili~T~~~~~Gld~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~g~---~~~ 387 (423)
+++..|.+.-..|++ ++.+|||||+++++|+|+ +++.||++++. .+..+..|.+|||||.|. .|.
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999987 889999999999999999 58889998865 367788999999999874 366
Q ss_pred EEEEecCcccHHHHHHHHHHHh
Q 014486 388 AITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
+..+.. +.+..+.+.|+
T Consensus 470 vTtl~~-----eDL~~L~~~l~ 486 (700)
T KOG0953|consen 470 VTTLHS-----EDLKLLKRILK 486 (700)
T ss_pred EEEeeH-----hhHHHHHHHHh
Confidence 666654 23455555554
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.4e-19 Score=160.17 Aligned_cols=338 Identities=15% Similarity=0.064 Sum_probs=217.8
Q ss_pred HHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 59 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
+.+.++.-+....+|.+++..+.+|.+.++.-.|.+||++++.............. ..+++.|+.++++....-+.-..
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~V~~ 355 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQVVHV 355 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCceEEEE
Confidence 44445555677899999999999999999999999999999887777655544433 67999999998877544332222
Q ss_pred ccCCCceEEEEE-cCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC----CCCCCccEEEEcCcchhhccCC--cHHH
Q 014486 139 TYLPDIKVAVFY-GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKMLESLD--MRRD 211 (423)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~----~~~~~~~~vVvDE~h~~~~~~~--~~~~ 211 (423)
...|..+.+++. .+...+.....+.....+++++.|+......-.+. ..+-...++++||+|..+...+ ....
T Consensus 356 ~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 356 EVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred EehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 222223322221 11222223333433336999999987765322111 2234556799999998765211 1112
Q ss_pred HHHHHHhC-----CCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEE---eChHHH---HHHHH
Q 014486 212 VQEIFKMT-----PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK---LSELEK---NRKLN 280 (423)
Q Consensus 212 ~~~~~~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~l~ 280 (423)
++++...+ +.+.|++-.+||+...+...-..+..+.......+..+......+.+--. ....++ .....
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s 515 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS 515 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHH
Confidence 22222221 33678999999998777655555544444333322221111111111000 011112 22222
Q ss_pred HHHHhh--cCCcEEEEEcChhhHHHHHHHHHhC----CC----CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCcccc
Q 014486 281 DLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGR 350 (423)
Q Consensus 281 ~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~ 350 (423)
.++... .+-++|.||+++..++-+....+.. +. .+..|.|+....+|..+....-.|+..-+|+|++++.
T Consensus 516 ~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALEL 595 (1034)
T KOG4150|consen 516 HLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALEL 595 (1034)
T ss_pred HHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhh
Confidence 222211 3468999999999988776654432 21 2345789999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 351 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 351 Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
|+|+..++.|++.+.|.|++.+.|..|||||.+++..++++.....-
T Consensus 596 GIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PV 642 (1034)
T KOG4150|consen 596 GIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPV 642 (1034)
T ss_pred ccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccch
Confidence 99999999999999999999999999999999999887776654333
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=6.3e-17 Score=156.91 Aligned_cols=274 Identities=18% Similarity=0.181 Sum_probs=176.5
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|++.|--+--.+ ++.-|..+.||-|||+++.+|+......+. .+-|++++.-||..-++++..+...+ +++++
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~L-GLtvg 158 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFL-GLSVG 158 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHh-CCeEE
Confidence 6777776664444 456899999999999999999988777655 68999999999999999999988887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCcchhhcc---------------
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES--------------- 205 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~------~~~~~~~~~vVvDE~h~~~~~--------------- 205 (423)
++.++.+.......+ . .+|+++|+..| +++++.+ ......+.++||||+|.++-+
T Consensus 159 ~i~~~~~~~err~aY-~--~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~ 235 (939)
T PRK12902 159 LIQQDMSPEERKKNY-A--CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERP 235 (939)
T ss_pred EECCCCChHHHHHhc-C--CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccc
Confidence 988776655444333 2 49999999876 2233221 123467889999999987621
Q ss_pred CCcHHHHHHHHHhCCC--------------Cc------------------------------------------------
Q 014486 206 LDMRRDVQEIFKMTPH--------------DK------------------------------------------------ 223 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~--------------~~------------------------------------------------ 223 (423)
.........+.+.+.. ..
T Consensus 236 ~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~d 315 (939)
T PRK12902 236 QEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVN 315 (939)
T ss_pred hHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCe
Confidence 0011111111111110 00
Q ss_pred ------------------------------------------------------------eEEEEeccCCccHHHHHHHh
Q 014486 224 ------------------------------------------------------------QVMMFSATLSKEIRPVCKKF 243 (423)
Q Consensus 224 ------------------------------------------------------------~~v~~SAT~~~~~~~~~~~~ 243 (423)
++.+||+|...+...+.+.+
T Consensus 316 YiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY 395 (939)
T PRK12902 316 YIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTY 395 (939)
T ss_pred EEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh
Confidence 34556666554444443333
Q ss_pred ccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH-Hhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCC
Q 014486 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-DAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 321 (423)
......+.. ..+........ .+......|...+.+-+ ..+ .+.|+||-|.+++.++.++..|.+.|++..+++..
T Consensus 396 ~l~Vv~IPT--nkP~~R~d~~d-~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk 472 (939)
T PRK12902 396 KLEVTVIPT--NRPRRRQDWPD-QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAK 472 (939)
T ss_pred CCcEEEcCC--CCCeeeecCCC-eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCC
Confidence 333222222 11111222222 23334455655555443 332 56899999999999999999999999999999986
Q ss_pred -CCHHHHHHHHHhhhcCC-ccEEEEcCccccCCCCC
Q 014486 322 -MSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIE 355 (423)
Q Consensus 322 -~~~~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~ 355 (423)
.....-..++.. .|+ ..|.|||++++||.|+.
T Consensus 473 ~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 473 PENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 333333444432 444 45999999999999974
No 147
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=4.9e-19 Score=125.55 Aligned_cols=78 Identities=45% Similarity=0.729 Sum_probs=75.5
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCC
Q 014486 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383 (423)
Q Consensus 306 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (423)
+.|+..++++..+||+++..+|..+++.|++++..|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.7e-17 Score=130.92 Aligned_cols=144 Identities=38% Similarity=0.503 Sum_probs=107.8
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (423)
+++++.+|||+|||.+++..+......... .+++|++|+..++.|+.+.+..+... ...+..+.+............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~-~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKG-GQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccC-CCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhc
Confidence 468999999999999988888777665333 38999999999999999988887643 467777777655554443333
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 014486 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (423)
. ..+|+++|++.+.............++++|+||+|.+.. ..................+++++||||
T Consensus 78 ~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 G-KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN-QGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred C-CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh-cchHHHHHHHHhhCCccceEEEEeccC
Confidence 3 369999999999887776655567788999999999976 333333223344456678899999996
No 149
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.74 E-value=2.6e-17 Score=138.07 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=103.3
Q ss_pred CCChhhhhccccccc-------CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhcc
Q 014486 68 HPSEVQHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 140 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~-------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (423)
.|+++|.+++..+.. .+.+++.+|||+|||.+++..+..... ++++++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999999884 578999999999999998765655555 8899999999999999999766543
Q ss_pred CCCceE---------EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC-----------CCCCCccEEEEcCcc
Q 014486 141 LPDIKV---------AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-----------LSLKNVRHFILDECD 200 (423)
Q Consensus 141 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~-----------~~~~~~~~vVvDE~h 200 (423)
...... .....................+++++|.+.+........ .....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 211100 001111111122233334446999999999987654321 223567899999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
++..... +..+.. .+...+++|||||++
T Consensus 157 ~~~~~~~----~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSDSS----YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHHHH----HHHHHH--SSCCEEEEEESS-S-
T ss_pred hcCCHHH----HHHHHc--CCCCeEEEEEeCccC
Confidence 8765211 444444 556779999999864
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=3.8e-16 Score=156.19 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=95.0
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCC-eEEEcCCCCHHHHHHHHHhhhcCCc-cEEEEcCccccCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDI 354 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~ili~T~~~~~Gld~ 354 (423)
..+..++...+ ++++||+++...++.+.+.+...... .+..++..+.. ..++.|..+.- .++|+|..+++|+|+
T Consensus 469 ~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccC
Confidence 34444444444 58999999999999999999987653 34455544433 67777876554 899999999999999
Q ss_pred CC--CCEEEEccCCC------------------------------CcchhhhcccccCCCCCceEEEEEecCcccHH-HH
Q 014486 355 ER--VNIVINYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSASDSD-IL 401 (423)
Q Consensus 355 ~~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~-~~ 401 (423)
++ +++||..+.|. .+..+.|.+||+.|..++..++++++...... +.
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~ 624 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYG 624 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHH
Confidence 87 57899888776 22345799999999888888888888755443 55
Q ss_pred HHHHHHHhc
Q 014486 402 NQVSKFMFL 410 (423)
Q Consensus 402 ~~~~~~~~~ 410 (423)
..+.+.+..
T Consensus 625 ~~l~~~l~~ 633 (654)
T COG1199 625 KLLLDSLPP 633 (654)
T ss_pred HHHHHhCCC
Confidence 555555543
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.2e-16 Score=151.21 Aligned_cols=125 Identities=24% Similarity=0.309 Sum_probs=97.4
Q ss_pred eChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC-ccEEEEcC
Q 014486 270 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KRILVATD 346 (423)
Q Consensus 270 ~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~ili~T~ 346 (423)
.....|...+.+-+... .+.|+||-+.+++..+.++..|...|++.-+++......+..-+ . ..|. ..|.|||+
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIV-A--~AG~~GaVTIATN 684 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIV-A--EAGQPGTVTIATN 684 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHH-H--hcCCCCcEEEecc
Confidence 34445555554444333 56899999999999999999999999998888887553333322 2 2343 45999999
Q ss_pred ccccCCCCC--------CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 347 LVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 347 ~~~~Gld~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+++||.|+. +--+||-...+.|..--.|-.||+||.|.+|..-.|++-.++
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999996 456799999999999999999999999999999999986443
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=2.4e-15 Score=147.91 Aligned_cols=329 Identities=16% Similarity=0.208 Sum_probs=213.8
Q ss_pred CCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 68 HPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
...|+|.++++.+... .++++.+|+|||||.++-++++. +.. ..+++++.|..+.+..++..+.+-.....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~~-~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PDT-IGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---Ccc-ceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 4489999999998875 55999999999999998877776 222 238999999999888776666543333357888
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC-----cHHHHHHHHHhCCC
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD-----MRRDVQEIFKMTPH 221 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~-----~~~~~~~~~~~~~~ 221 (423)
..++|..+... +.+..+ +|+|+||+++..+ + ....+++.|+||+|.+.+..+ .-. ++.+...+.+
T Consensus 1219 ~~l~ge~s~~l--kl~~~~--~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1219 VKLTGETSLDL--KLLQKG--QVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEK 1288 (1674)
T ss_pred EecCCccccch--HHhhhc--ceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHh
Confidence 88888765543 233333 9999999998766 2 567789999999998864211 112 6677777778
Q ss_pred CceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChH-HHH-----HHHHHHH-HhhcCCcEEEE
Q 014486 222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKN-----RKLNDLL-DALDFNQVVIF 294 (423)
Q Consensus 222 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~l~~ll-~~~~~~~~ivf 294 (423)
..+++++|..+.+.- ++ ......-.+...+.....+-.+..+.+..... ... ..+..+. ....+++.+||
T Consensus 1289 ~ir~v~ls~~lana~-d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANAR-DL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred heeEEEeehhhccch-hh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 889999998887642 22 11111112222222222222222222222211 111 1111111 12256889999
Q ss_pred EcChhhHHHHHHHHHhC----------------------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCC
Q 014486 295 VKSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (423)
Q Consensus 295 ~~~~~~~~~l~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gl 352 (423)
+++++++..++..|-.. ..+..+=|.+++..+..-+..-|..|.+.|+|...- ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999988776554321 112222277888888888888899999999998766 7777
Q ss_pred CCCCCCEEEEcc-----------CCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhhhhh
Q 014486 353 DIERVNIVINYD-----------MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSFQCL 418 (423)
Q Consensus 353 d~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (423)
-... +.||..+ .+.+...+.|++|++.|+ |.|+++.+.....-+.+-+.+.+.+.-..-+|+
T Consensus 1445 ~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkfl~e~lPves~lq~~l 1517 (1674)
T KOG0951|consen 1445 KLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCL 1517 (1674)
T ss_pred cccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHhccCcCchHHHHHHHH
Confidence 6643 3344222 245678899999999995 568888887666655566666666655555554
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.4e-14 Score=145.08 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=82.2
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCC-------CeEEEcCCCCHHHHHHHHHhhhc----CCccEEEEc--CccccCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQEERLTRYKGFKE----GNKRILVAT--DLVGRGIDI 354 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~ili~T--~~~~~Gld~ 354 (423)
++.+|||+++....+.+.+.+...+. ..+.+-+ -...++..+++.|+. ++..||+++ ..+++|+|+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 47899999999999999888876432 1222222 222577888999964 455699998 889999999
Q ss_pred CC--CCEEEEccCCC-Cc------------------------------chhhhcccccCCCCCceEEEEEecCcccH
Q 014486 355 ER--VNIVINYDMPD-SA------------------------------DTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 355 ~~--~~~vi~~~~~~-s~------------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
++ +++||.+++|. ++ ....|.+||+-|..++-.++++++.....
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~ 677 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYAR 677 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehhcCC
Confidence 87 78999999886 21 12369999999998888888888765443
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.68 E-value=2.9e-14 Score=141.58 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=80.2
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhh----cCCccEEEEcCccccCCCCCC--CCE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER--VNI 359 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~ili~T~~~~~Gld~~~--~~~ 359 (423)
..+.++|++++....+.+++.|... +.+ +...+. ..+..+++.|+ .++..||++|..+.+|+|+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3456899999999999999998753 333 334453 24666776666 467779999999999999987 788
Q ss_pred EEEccCCCC-c-----------------------------chhhhcccccCCCCCceEEEEEecCcc
Q 014486 360 VINYDMPDS-A-----------------------------DTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 360 vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
||...+|.. | ..+.|.+||.-|..++..++++.++..
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 999887752 1 134699999999988877888888753
No 155
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.67 E-value=2.5e-15 Score=146.46 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=99.8
Q ss_pred EEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---Hh
Q 014486 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LK 163 (423)
Q Consensus 87 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 163 (423)
+..+.+|||||.+|+-.+.+.+..++ .+||++|...|+.|+.+.+++... +..+..++++.+..+..+. ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHh
Confidence 34444699999999876666655443 799999999999999999987653 2468889998876655443 45
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc----CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHH
Q 014486 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~----~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 239 (423)
++..+|+|+|...++ ..+.++++|||||=|.-.-. ..+...-..+++....+.++|+.|||+.-+....
T Consensus 238 ~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 238 RGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHH
Confidence 677899999988775 47789999999999954321 1122222223333345778999999988665443
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=4e-16 Score=112.03 Aligned_cols=81 Identities=46% Similarity=0.762 Sum_probs=77.0
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC
Q 014486 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 382 (423)
Q Consensus 303 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 382 (423)
.+.+.|...++++..+||.++..+|..+++.|+++...+||+|+++++|+|++.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 014486 383 G 383 (423)
Q Consensus 383 g 383 (423)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 157
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=2.2e-15 Score=156.78 Aligned_cols=333 Identities=18% Similarity=0.213 Sum_probs=209.3
Q ss_pred CCCChhhhhccccccc-----CCceEEEccCCCcchhHHHHHHhhccCCCCC-CeEEEEEecChHHHHHHHHHHHHHhcc
Q 014486 67 EHPSEVQHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPG-QVTALVLCHTRELAYQICHEFERFSTY 140 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (423)
..+++||...+.++.. +.+.+++.++|.|||+..+..+......... .+.+++++|+ +++.+|.+++.++..
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~- 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAP- 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCc-
Confidence 4688999999987662 5678999999999998876655542222221 2378999997 677888888877764
Q ss_pred CCCce-EEEEEcCcch----HHHHHHHhcC----CCcEEEechHHHHHHH-hcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 141 LPDIK-VAVFYGGVNI----KIHKDLLKNE----CPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 141 ~~~~~-~~~~~~~~~~----~~~~~~~~~~----~~~ilv~T~~~l~~~~-~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
.++ +..++|.... ......+... .++++++|++.+.... ....+.-..+..+|+||+|.+.+. ...
T Consensus 415 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~--~s~ 490 (866)
T COG0553 415 --DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND--QSS 490 (866)
T ss_pred --cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh--hhH
Confidence 445 7777776642 2333333322 2589999999887732 222344466788999999997652 111
Q ss_pred HHHHHHHhCCCCceEEEEeccCC-ccHH--------------------------------------------------HH
Q 014486 211 DVQEIFKMTPHDKQVMMFSATLS-KEIR--------------------------------------------------PV 239 (423)
Q Consensus 211 ~~~~~~~~~~~~~~~v~~SAT~~-~~~~--------------------------------------------------~~ 239 (423)
....+. .+.... .+.+|+||- +.+. ..
T Consensus 491 ~~~~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 491 EGKALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 111111 111111 244555540 0000 00
Q ss_pred HHHhc-cCC-ce--ee--------------------------ec----------c---cc---------cc-------cc
Q 014486 240 CKKFM-QDP-ME--IY--------------------------VD----------D---EA---------KL-------TL 260 (423)
Q Consensus 240 ~~~~~-~~~-~~--~~--------------------------~~----------~---~~---------~~-------~~ 260 (423)
+..+. ... .. +. .. . .. .. ..
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 00000 000 00 00 00 0 00 00 00
Q ss_pred ccceEEEEEeC-----------------------------hH-HHHHHHHHHH-Hh--hcCC--cEEEEEcChhhHHHHH
Q 014486 261 HGLVQHYIKLS-----------------------------EL-EKNRKLNDLL-DA--LDFN--QVVIFVKSVSRAAELN 305 (423)
Q Consensus 261 ~~~~~~~~~~~-----------------------------~~-~~~~~l~~ll-~~--~~~~--~~ivf~~~~~~~~~l~ 305 (423)
..+..+..... .. .|...+.+++ .. ..+. ++++|++.....+.+.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 00000000000 00 4556666666 22 2344 8999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcC--CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCC
Q 014486 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEG--NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 383 (423)
Q Consensus 306 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (423)
..|...++....++|.++...|...++.|.++ ...+++++.+++.|+|+..+++||++|+.|++....|+..|++|.|
T Consensus 729 ~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 729 DYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 99999998899999999999999999999986 3456668899999999999999999999999999999999999999
Q ss_pred CceEEEEE--ecCcc-cHHHHHHHHHH
Q 014486 384 TKGLAITF--VSSAS-DSDILNQVSKF 407 (423)
Q Consensus 384 ~~~~~~~~--~~~~~-~~~~~~~~~~~ 407 (423)
|+..+.++ +.... +..++....++
T Consensus 809 Q~~~v~v~r~i~~~tiEe~i~~~~~~K 835 (866)
T COG0553 809 QKRPVKVYRLITRGTIEEKILELQEKK 835 (866)
T ss_pred CcceeEEEEeecCCcHHHHHHHHHHHH
Confidence 98665543 43333 34444444443
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.65 E-value=1.5e-14 Score=142.78 Aligned_cols=320 Identities=18% Similarity=0.162 Sum_probs=178.9
Q ss_pred HHHHHhCCCCCCChhhhhccccccc----C--Cc--eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 58 LRAIVDSGFEHPSEVQHECIPQAIL----G--MD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~----~--~~--~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
.+.+.+..-..-+.+|-+|+..+.. . +. ++-.|.||+|||++=. -|+..+.....+.+..|..-.|.|..|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCCCCCceEEEEccccceecc
Confidence 3444433333456788888877664 1 12 6778999999998753 344444444455577777778888888
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHH-------------------------------------------HHhc--
Q 014486 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKD-------------------------------------------LLKN-- 164 (423)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~-- 164 (423)
.-+.+++-.... +-..+++.|+....+... .+.+
T Consensus 477 TGda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~ 555 (1110)
T TIGR02562 477 TGHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDD 555 (1110)
T ss_pred chHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccCh
Confidence 877776644332 334444444432211110 0000
Q ss_pred -----CCCcEEEechHHHHHHHhcC---CCCC----CCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEecc
Q 014486 165 -----ECPQIVVGTPGRILALARDK---DLSL----KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSAT 231 (423)
Q Consensus 165 -----~~~~ilv~T~~~l~~~~~~~---~~~~----~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT 231 (423)
-...++|||++.++...... ...+ -.-+.||+||+|.+.. .....+.+++..+ ....++++||||
T Consensus 556 k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~--~~~~~L~rlL~w~~~lG~~VlLmSAT 633 (1110)
T TIGR02562 556 KEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP--EDLPALLRLVQLAGLLGSRVLLSSAT 633 (1110)
T ss_pred hhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH--HHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 01469999999998765221 1111 1134699999997754 2233344444422 225779999999
Q ss_pred CCccHHHHHHHhc-----------cCC---ceee--eccccccc----------------------------cccceEEE
Q 014486 232 LSKEIRPVCKKFM-----------QDP---MEIY--VDDEAKLT----------------------------LHGLVQHY 267 (423)
Q Consensus 232 ~~~~~~~~~~~~~-----------~~~---~~~~--~~~~~~~~----------------------------~~~~~~~~ 267 (423)
+|+.+...+...+ +.+ ..+- ..++.... ...-.-..
T Consensus 634 LP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i 713 (1110)
T TIGR02562 634 LPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAEL 713 (1110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEE
Confidence 9988765432221 211 1111 00000000 00000011
Q ss_pred EEeChH-----HHHHHHHH--------HHHhh----c-CCc----EEEEEcChhhHHHHHHHHHhC----C--CCeEEEc
Q 014486 268 IKLSEL-----EKNRKLND--------LLDAL----D-FNQ----VVIFVKSVSRAAELNKLLVEC----N--FPSICIH 319 (423)
Q Consensus 268 ~~~~~~-----~~~~~l~~--------ll~~~----~-~~~----~ivf~~~~~~~~~l~~~L~~~----~--~~~~~~~ 319 (423)
..++.. .....+.. +...+ + .++ .+|-.++++.+-.+++.|... + +.+.+||
T Consensus 714 ~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yH 793 (1110)
T TIGR02562 714 LSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYH 793 (1110)
T ss_pred eecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEec
Confidence 111111 11111111 11111 1 122 478888888888887777654 2 3477799
Q ss_pred CCCCHHHHHHHHHhh---------------------h-c----CCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhh
Q 014486 320 SGMSQEERLTRYKGF---------------------K-E----GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373 (423)
Q Consensus 320 ~~~~~~~r~~~~~~f---------------------~-~----~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~ 373 (423)
+..+...|..+.+.. . + +...|+|+|++.+.|+|+. .+ ..+..|.++...+
T Consensus 794 Sr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd--~~~~~~~~~~sli 870 (1110)
T TIGR02562 794 AQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YD--WAIADPSSMRSII 870 (1110)
T ss_pred ccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CC--eeeeccCcHHHHH
Confidence 998777776654332 1 1 3567999999999999973 34 3344577788999
Q ss_pred hcccccCCCCC
Q 014486 374 HRVGRAGRFGT 384 (423)
Q Consensus 374 Q~~GR~~R~g~ 384 (423)
|++||+.|.|.
T Consensus 871 Q~aGR~~R~~~ 881 (1110)
T TIGR02562 871 QLAGRVNRHRL 881 (1110)
T ss_pred HHhhccccccc
Confidence 99999999764
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.65 E-value=7.6e-15 Score=140.49 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHh----------------------CCCCeEEEcCCCCHHHHHHH
Q 014486 275 KNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVE----------------------CNFPSICIHSGMSQEERLTR 330 (423)
Q Consensus 275 ~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~----------------------~~~~~~~~~~~~~~~~r~~~ 330 (423)
|.-.|.++|... -+.+.|||.++....+-+..+|.. .|.....+.|..+...|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344566666544 368999999999998888888754 24567788999999999999
Q ss_pred HHhhhcCC----ccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE
Q 014486 331 YKGFKEGN----KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (423)
Q Consensus 331 ~~~f~~~~----~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 391 (423)
.+.|++.. .-.||+|.+.+.|+|+-.++.||+||-.|+|+.-.|.+=|+.|.||..-|+++
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99998643 23899999999999999999999999999999999999999999998888764
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.56 E-value=3.9e-13 Score=129.63 Aligned_cols=288 Identities=13% Similarity=0.182 Sum_probs=179.3
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
-.+|.+|+|+|||.+..-++-..+.. +. .++|+++.+++|+.+....++...- ++.. .+..... ..+..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~-~~-~~VLvVShRrSL~~sL~~rf~~~~l--~gFv--~Y~d~~~-----~~i~~ 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN-PD-KSVLVVSHRRSLTKSLAERFKKAGL--SGFV--NYLDSDD-----YIIDG 119 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC-CC-CeEEEEEhHHHHHHHHHHHHhhcCC--Ccce--eeecccc-----ccccc
Confidence 37999999999998765555444432 22 2899999999999999988875421 1221 1111111 01111
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHH-------HHHHHHhCCCCceEEEEeccCCccHH
Q 014486 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD-------VQEIFKMTPHDKQVMMFSATLSKEIR 237 (423)
Q Consensus 165 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~SAT~~~~~~ 237 (423)
..++-+++..++|.++. ...+.++++||+||+-..+.. -+.+. +..+...+.....+|++-|++.....
T Consensus 120 ~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 12467777888886543 224567899999999988762 23222 33344556667889999999999999
Q ss_pred HHHHHhccCCceeeecccccc-ccccceEEEE----------------------------------EeChHHHHHHHHHH
Q 014486 238 PVCKKFMQDPMEIYVDDEAKL-TLHGLVQHYI----------------------------------KLSELEKNRKLNDL 282 (423)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l 282 (423)
++++.+........+..+... ....-.-.+. .....+.......+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 998887654332221111000 0000000000 00001122344445
Q ss_pred HHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC--CE
Q 014486 283 LDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV--NI 359 (423)
Q Consensus 283 l~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~--~~ 359 (423)
+..+ .++++.||+.+...++.+++..+..+..+..+++.-+..+. +. -++.+|++-|+++..|+++... +-
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceE
Confidence 5554 35678889999999999999999888888889887665532 22 3578999999999999998654 33
Q ss_pred EEEccCC----CCcchhhhcccccCCCCCceEEEEEecC
Q 014486 360 VINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 360 vi~~~~~----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
|+.|--| .++.+..|++||+..... ...+++++.
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~d~ 387 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYIDA 387 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEEec
Confidence 4444323 234467999999976543 455555553
No 161
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.52 E-value=4.5e-12 Score=119.52 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=93.0
Q ss_pred CcEEEEEcChhhHHHHHHHHHhCC------------------CCeEEEcCCCCHHHHHHHHHhhhcCC---ccEEEEcCc
Q 014486 289 NQVVIFVKSVSRAAELNKLLVECN------------------FPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDL 347 (423)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~ili~T~~ 347 (423)
.++|||..+....+.+.+.|..+. ...+.+.|..+..+|++.+.+|++.. .-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 468999999999999988887752 24556788899999999999998643 247889999
Q ss_pred cccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE---ecCcccHHHHHH
Q 014486 348 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF---VSSASDSDILNQ 403 (423)
Q Consensus 348 ~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~---~~~~~~~~~~~~ 403 (423)
...|+|+-..+.+|.++..|++..-.|++.|+.|.||+..|+++ ++..-+..+++.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydR 858 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDR 858 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998877754 333344444443
No 162
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=2.9e-11 Score=111.03 Aligned_cols=238 Identities=18% Similarity=0.219 Sum_probs=163.2
Q ss_pred CcEEEechHHHHHHHhcC------CCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC--------------------
Q 014486 167 PQIVVGTPGRILALARDK------DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-------------------- 220 (423)
Q Consensus 167 ~~ilv~T~~~l~~~~~~~------~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-------------------- 220 (423)
.||||++|=-|...+... ...++.+.++|+|.+|.+.- .+ ...+..+++.++
T Consensus 132 SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QN-W~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 132 SDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QN-WEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred CCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hh-HHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 589999999888777642 23378899999999998763 12 222222222222
Q ss_pred ----CCceEEEEeccCCccHHHHHHHhccCCce-eee--ccc----cccccccceEEEEEeCh-------HHHHH-----
Q 014486 221 ----HDKQVMMFSATLSKEIRPVCKKFMQDPME-IYV--DDE----AKLTLHGLVQHYIKLSE-------LEKNR----- 277 (423)
Q Consensus 221 ----~~~~~v~~SAT~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~~~~~~~~~~~~~-------~~~~~----- 277 (423)
.-+|.|++|+...+++..+....+.+..- +.+ ... -......+.+.+...+. ..+..
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 23499999999999998888775544321 111 111 01222333344433221 11221
Q ss_pred HHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc--cCCCCC
Q 014486 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG--RGIDIE 355 (423)
Q Consensus 278 ~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~--~Gld~~ 355 (423)
.+-.+......+.+|||+++.-+--.+.++|+..++....++.-++..+-.++-..|..|+.+||+.|.-+- +=..+.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 122222133457899999999999999999999999999999999999999999999999999999997654 457788
Q ss_pred CCCEEEEccCCCCcchhhhcccccCCCCC------ceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 356 RVNIVINYDMPDSADTYLHRVGRAGRFGT------KGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 356 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
++++||+|++|..+.-|...+.-.+.... ...|.++++.- +. ..|++..|.
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~-D~---~~LErIVGt 426 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY-DA---LRLERIVGT 426 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh-HH---HHHHHHhCH
Confidence 89999999999999988877765555433 57888888743 32 345555553
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.49 E-value=3.4e-13 Score=102.85 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=80.3
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
|+-.++..++|+|||.-.+.-++.+....+. ++|||.|||.++..+.+.++. ..+..-..... . ..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~~-------~~~~~~t~~~~-~---~~- 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALKG-------LPVRFHTNARM-R---TH- 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTT-------SSEEEESTTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHhc-------CCcccCceeee-c---cc-
Confidence 4447899999999999877666665444333 899999999999988876643 23322222111 1 11
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC-CcHHHHHHHHHhCCCCceEEEEeccCCccH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL-DMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~-~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (423)
.+..-|-++|+..+.+++.+ .....++++||+||||...... .++..+... ... ....+|++|||+|...
T Consensus 70 -~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 -FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred -cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 12247889999998887655 5567899999999999653210 112222222 222 2357999999999654
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.47 E-value=9.8e-12 Score=126.97 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=93.9
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (423)
+.++|+.-+|||||++.+. +...+......+++++||.++.|-.|..+.+..+........ ...+.....+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHHHHHh
Confidence 4599999999999998544 333333336677999999999999999999999875432111 3445555556666
Q ss_pred cCCCcEEEechHHHHHHHhcC-C-CCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 164 NECPQIVVGTPGRILALARDK-D-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~-~-~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
.+.-.|+|||-++|-...... . ..-.+--+||+||||+-- +...-..+...++ ....+++|+||-
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ----~G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ----YGELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc----ccHHHHHHHHHhc-cceEEEeeCCcc
Confidence 554599999999998876553 1 112233468999999642 2222222233333 366999999984
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.47 E-value=2.6e-12 Score=124.81 Aligned_cols=312 Identities=20% Similarity=0.245 Sum_probs=194.0
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|+..|.-+ .+.-+..-+..+-||-|||+++.+|+.-....++ .+.+++..--||..-++++..+..+. +++++
T Consensus 80 ~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG 153 (822)
T COG0653 80 RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFL-GLSVG 153 (822)
T ss_pred ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHc-CCcee
Confidence 455555544 4555566889999999999999999887776655 56888888899999999999988887 99999
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCcchhhcc---------------
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES--------------- 205 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~~~~~vVvDE~h~~~~~--------------- 205 (423)
+...+....+....+. .+|.++|...| +++++.+. .....+.+.|+||++.++-+
T Consensus 154 ~~~~~m~~~ek~~aY~---~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 154 VILAGMSPEEKRAAYA---CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eccCCCChHHHHHHHh---cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 9988886665555544 49999998765 22222211 12346889999999987621
Q ss_pred CCcHHHHHHHHHhCCCC--------c------------------------------------------------------
Q 014486 206 LDMRRDVQEIFKMTPHD--------K------------------------------------------------------ 223 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~--------~------------------------------------------------------ 223 (423)
...+..+..+...+... .
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 11222333333222211 0
Q ss_pred -------------------------------------------------------eEEEEeccCCccHHHHHHHhccCCc
Q 014486 224 -------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQDPM 248 (423)
Q Consensus 224 -------------------------------------------------------~~v~~SAT~~~~~~~~~~~~~~~~~ 248 (423)
++.+||+|...+...+...+.....
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 1112222222222222222222221
Q ss_pred eeeeccccccccccceEEEEEeChHHHHHHHHHHHHh-h-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHH
Q 014486 249 EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-L-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 326 (423)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 326 (423)
.+....+ ...... ...+......|...+..-+.. + .+.|+||-+.+++.++.+.+.|.+.|++..++.......+
T Consensus 391 ~iPTnrp--~~R~D~-~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E 467 (822)
T COG0653 391 VIPTNRP--IIRLDE-PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE 467 (822)
T ss_pred eccCCCc--ccCCCC-ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH
Confidence 1111111 111111 111222344455444444432 2 5689999999999999999999999999989988876444
Q ss_pred HHHHHHhhhcCCc-cEEEEcCccccCCCCCCCC-----------EEEEccCCCCcchhhhcccccCCCCCceEEEEEecC
Q 014486 327 RLTRYKGFKEGNK-RILVATDLVGRGIDIERVN-----------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 327 r~~~~~~f~~~~~-~ili~T~~~~~Gld~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
-..+ .+ .|.. -|-|||+++++|-|+.--. +||-...-.|-.--.|-.||+||.|-+|..-.+++-
T Consensus 468 A~Ii--a~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 468 AEII--AQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred HHHH--hh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 4433 22 3333 4889999999999985322 344444444444456999999999988888877764
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.43 E-value=6.6e-13 Score=120.46 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccC--CCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (423)
.+.++++.++|+|||.+.+..+..... ...+...+||++|. .+..||..++.++.... .+++..+.+.........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-cccccccccccccccccc
Confidence 356999999999999887665542221 22221258999999 78899999999987542 567777776651111111
Q ss_pred HHhcCCCcEEEechHHHHHHHh---cCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCcc
Q 014486 161 LLKNECPQIVVGTPGRILALAR---DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 235 (423)
Q Consensus 161 ~~~~~~~~ilv~T~~~l~~~~~---~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~ 235 (423)
.. ...++++++|++.+..... ...+...++++||+||+|.+.+ ........+ ..+. ...++++||||-..
T Consensus 103 ~~-~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~~~l-~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 103 NQ-LPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRYKAL-RKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp SS-CCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHHHHH-HCCC-ECEEEEE-SS-SSS
T ss_pred cc-cccceeeeccccccccccccccccccccccceeEEEeccccccc--ccccccccc-cccc-cceEEeeccccccc
Confidence 11 2336999999999981000 0011123488999999999954 222223333 3344 56688999998543
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.2e-10 Score=105.71 Aligned_cols=329 Identities=16% Similarity=0.198 Sum_probs=197.9
Q ss_pred CCCCChhhhhcccccccCCceEE-EccCCCcc--hhHHHHHHhhccCC----------------------------CCCC
Q 014486 66 FEHPSEVQHECIPQAILGMDVIC-QAKSGMGK--TAVFVLSTLQQTEP----------------------------NPGQ 114 (423)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~ii-~~~tGsGK--T~~~~~~~~~~~~~----------------------------~~~~ 114 (423)
-.++++.|.+.+..+..-++++. ....+.|+ +.+|.+-++.++.. +-..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 45889999999988888888553 33345566 34555655543211 1134
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEE------------------------------EEcCcc--------hH
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAV------------------------------FYGGVN--------IK 156 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~--------~~ 156 (423)
|++||+||+++-|-.+...+..++.....-+..+ +.|+++ +.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 7999999999999999998887743221101110 111111 11
Q ss_pred HHHHHHhc--CCCcEEEechHHHHHHHhcCCC------CCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC------
Q 014486 157 IHKDLLKN--ECPQIVVGTPGRILALARDKDL------SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD------ 222 (423)
Q Consensus 157 ~~~~~~~~--~~~~ilv~T~~~l~~~~~~~~~------~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~------ 222 (423)
...-.+.. ...+|+||+|=-|..++.+... .++.+.++|||-+|.++- .++. .+..++..+...
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwE-hl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWE-HLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHH-HHHHHHHHhhcCcccccC
Confidence 11111111 1259999999988887773322 257788999999998875 3333 333333333221
Q ss_pred ------------------ceEEEEeccCCccHHHHHHHhccCCceee----eccc-----cccccccceEE-----EEEe
Q 014486 223 ------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIY----VDDE-----AKLTLHGLVQH-----YIKL 270 (423)
Q Consensus 223 ------------------~~~v~~SAT~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~-----~~~~ 270 (423)
+|.+++|+--.+....+...++.+..--. +... ...+...+.+. ....
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 26666666655555555544443321110 0000 00011111111 1122
Q ss_pred ChHHHHHHHHHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc
Q 014486 271 SELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (423)
Q Consensus 271 ~~~~~~~~l~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~ 347 (423)
++..-...+..++-.. ....+|||.++.-.--++.++++..++....++.-.+...-.++-.-|-.|...+|+.|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 2222222333333222 2346899999999999999999998888777777777776666777799999999999976
Q ss_pred cc--cCCCCCCCCEEEEccCCCCcchhh---hcccccCCCC----CceEEEEEecCcc
Q 014486 348 VG--RGIDIERVNIVINYDMPDSADTYL---HRVGRAGRFG----TKGLAITFVSSAS 396 (423)
Q Consensus 348 ~~--~Gld~~~~~~vi~~~~~~s~~~~~---Q~~GR~~R~g----~~~~~~~~~~~~~ 396 (423)
+- +-.++.+++.||+|.+|..|.-|. -+.+|+.-.| ..-.|.++++.-+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 54 568899999999999999998775 4445544333 2357778887543
No 168
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.13 E-value=1.4e-10 Score=111.36 Aligned_cols=307 Identities=19% Similarity=0.225 Sum_probs=179.1
Q ss_pred cccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 014486 76 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 153 (423)
Q Consensus 76 ~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 153 (423)
.+..+..+..++|.+.||+|||..+..-+++.....+ ....+.+..|++..+..+++++.+.-....+-.+ +.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv-----gy 460 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC-----GY 460 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc-----cc
Confidence 3333344556899999999999998888888766544 2235677789998888888777543211111111 11
Q ss_pred chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 154 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 154 ~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
+.+... ......--|..||.+-+++...... ..+.++|+||.|...-..+|...+.+=..-..+...++++|||+.
T Consensus 461 ~vRf~S-a~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 461 NVRFDS-ATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred cccccc-cccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 111111 1111112689999999988776543 456789999999876544554444333333334444555555543
Q ss_pred ccH--------------------HHHHHHhccCCceeeeccccccccccceEEEEE-------------e----------
Q 014486 234 KEI--------------------RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK-------------L---------- 270 (423)
Q Consensus 234 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---------- 270 (423)
.+. ..+.......+....-..+....... ...... .
T Consensus 537 Td~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~-~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~ 615 (1282)
T KOG0921|consen 537 TDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKK-DDDEEDEEVDDKGRNMNILCDPSYNESTRT 615 (1282)
T ss_pred hhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhh-cccccCchhhhcccccccccChhhcchhhh
Confidence 332 11111111111111100000000000 000000 0
Q ss_pred -----ChHHHH-HHHHHHHHh----hcCCcEEEEEcChhhHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHHHHHh
Q 014486 271 -----SELEKN-RKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKG 333 (423)
Q Consensus 271 -----~~~~~~-~~l~~ll~~----~~~~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~ 333 (423)
.+.... ..+..++.. .-.+.+++|.+.....-.+...|... .++.+.+|+.....+..++.+.
T Consensus 616 am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~ 695 (1282)
T KOG0921|consen 616 AMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEP 695 (1282)
T ss_pred hhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCc
Confidence 000000 111111111 12467899999988888887777553 4678889999998888888888
Q ss_pred hhcCCccEEEEcCccccCCCCCCCCEEEEccCC------------------CCcchhhhcccccCCCCCceEEEEEec
Q 014486 334 FKEGNKRILVATDLVGRGIDIERVNIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 334 f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
...|..++++.|.++...+.+.++..||+.+.. .+.....||.||+||. .+|.+..+++
T Consensus 696 ~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 696 VPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred ccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 888999999999999999999887777743321 2566779999999996 4566666554
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=7.7e-10 Score=98.50 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCCCChhhhhcc----cccccCCceEEEccCCCcchhHHHHHHhhccCCCCC---CeEEEEEecChHHHHHHHHHHHHH
Q 014486 65 GFEHPSEVQHECI----PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 65 ~~~~~~~~Q~~~i----~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.| .|+|.|.+.+ ..+..++++++.+|||+|||++++.|++..+...+. ..+++|.++|..+..|....+++.
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 44 4699999844 445558889999999999999999999865443222 237899999999988887777654
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=7.7e-10 Score=98.50 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCCCChhhhhcc----cccccCCceEEEccCCCcchhHHHHHHhhccCCCCC---CeEEEEEecChHHHHHHHHHHHHH
Q 014486 65 GFEHPSEVQHECI----PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 65 ~~~~~~~~Q~~~i----~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.| .|+|.|.+.+ ..+..++++++.+|||+|||++++.|++..+...+. ..+++|.++|..+..|....+++.
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 44 4699999844 445558889999999999999999999865443222 237899999999988887777654
No 171
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.07 E-value=7.5e-10 Score=107.87 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=99.4
Q ss_pred cEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc-c-EEEEcCccccCCCCCCCCEEEEccCCC
Q 014486 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-R-ILVATDLVGRGIDIERVNIVINYDMPD 367 (423)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~-ili~T~~~~~Gld~~~~~~vi~~~~~~ 367 (423)
+++||+....-+..+.-.|...++....+.|.++...|.+.+..|..+.. . .+++..+.+.|+|+..+.+|+..++-|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 89999999999999988888889999999999999999999999986543 3 445789999999999999999999999
Q ss_pred CcchhhhcccccCCCCCceEEEE---EecCcccHHHHHHHHHHHh
Q 014486 368 SADTYLHRVGRAGRFGTKGLAIT---FVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 368 s~~~~~Q~~GR~~R~g~~~~~~~---~~~~~~~~~~~~~~~~~~~ 409 (423)
+|....|++-|++|-||...+.+ ++-...+..+++.=+++..
T Consensus 621 np~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 99999999999999998876665 2333445555555444443
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.04 E-value=3.8e-09 Score=91.38 Aligned_cols=130 Identities=22% Similarity=0.278 Sum_probs=96.6
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ .|++.|.-++-.+..| -|+...||-|||++..+++......+. .+-|++.+..||..=++++..+...+ ++
T Consensus 75 g~-~p~~vQll~~l~L~~G--~laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~L-Gl 147 (266)
T PF07517_consen 75 GL-RPYDVQLLGALALHKG--RLAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFL-GL 147 (266)
T ss_dssp S-----HHHHHHHHHHHTT--SEEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHT-T-
T ss_pred CC-cccHHHHhhhhhcccc--eeEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHh-hh
Confidence 44 7899999888766554 499999999999999888877766554 78899999999999999999999888 99
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCCC------CCCCccEEEEcCcchhhc
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDL------SLKNVRHFILDECDKMLE 204 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~-~~~~~~~------~~~~~~~vVvDE~h~~~~ 204 (423)
++....++.+.......+. .+|+++|...+.- +++.... ....+.++||||+|.++-
T Consensus 148 sv~~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred ccccCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 9999999887655444443 3899999987753 4443211 146788999999998864
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.77 E-value=2.2e-08 Score=81.73 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=80.1
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCC--CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC--ccccCCCCCC
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATD--LVGRGIDIER 356 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~--~~~~Gld~~~ 356 (423)
++++..+ +.++||+++.+..+.+.+.++.... ....+.. +..++..+++.|+.++..||+++. .+.+|+|+++
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 4444444 8899999999999999999887632 1122232 255778889999999999999998 9999999996
Q ss_pred --CCEEEEccCCCC-c-----------------------------chhhhcccccCCCCCceEEEEEecCcccH
Q 014486 357 --VNIVINYDMPDS-A-----------------------------DTYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 357 --~~~vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
+++||..++|.. + ....|.+||+-|..++..+++++++....
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R~~~ 153 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSRFLS 153 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGGGGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCcccc
Confidence 778999998852 1 12359999999998888888888865444
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.76 E-value=7.3e-08 Score=96.54 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=55.7
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC-----CC----ceEEEEEecCcccHHHHHHHHHHH
Q 014486 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-----GT----KGLAITFVSSASDSDILNQVSKFM 408 (423)
Q Consensus 338 ~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-----g~----~~~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
..+.+++.+++.+|.|.|++-.+..+....|...-.|.+||.-|. |. ......++.+..+.+..+.|.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999888899888998999999999993 21 112344555666666666666665
Q ss_pred h
Q 014486 409 F 409 (423)
Q Consensus 409 ~ 409 (423)
+
T Consensus 581 ~ 581 (986)
T PRK15483 581 N 581 (986)
T ss_pred H
Confidence 4
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.71 E-value=1.7e-06 Score=83.90 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCC--CCceEE----------EEEecCcccHHHHHHH
Q 014486 337 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--GTKGLA----------ITFVSSASDSDILNQV 404 (423)
Q Consensus 337 ~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~~~~----------~~~~~~~~~~~~~~~~ 404 (423)
...+.+++..++-+|+|-|++=.+.-+....|..+=.|.+||.-|. ++.|.= ..++.+..+...+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999993 333321 2244456777777777
Q ss_pred HHHHh
Q 014486 405 SKFMF 409 (423)
Q Consensus 405 ~~~~~ 409 (423)
.+.+.
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 76655
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=3.4e-08 Score=97.19 Aligned_cols=131 Identities=21% Similarity=0.310 Sum_probs=101.0
Q ss_pred CCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 68 HPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
...|.|.+.+..+.. ..++++-+|||+|||.++-+++...+...+.. +++++.|..+|+..-.+....-... +++++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~-kvvyIap~kalvker~~Dw~~r~~~-~g~k~ 1004 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGS-KVVYIAPDKALVKERSDDWSKRDEL-PGIKV 1004 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCc-cEEEEcCCchhhcccccchhhhccc-CCcee
Confidence 556788888766665 46699999999999999999888877766654 9999999999988876666544332 47888
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh--cCCCCCCCccEEEEcCcchhhc
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR--DKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~--~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
.-..|..... ...... ++++|+||+++..+.+ .....+.+++.+|+||.|.+.+
T Consensus 1005 ie~tgd~~pd--~~~v~~--~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1005 IELTGDVTPD--VKAVRE--ADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred EeccCccCCC--hhheec--CceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 8888866543 222222 5999999999988877 3445678999999999998876
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.65 E-value=8.1e-07 Score=89.02 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=55.2
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 168 ~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
.|+++||..+..=+-.+.+.+.++..|||||||++.+ .....-+.++++..++..-+.++|++|.
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 8999999999886667788999999999999999987 5666677788877777888999999963
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.61 E-value=3e-07 Score=80.11 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCChhhhhcccccccCCc-eEEEccCCCcchhHHHHHHhhcc-----CCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQT-----EPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~-----~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
++++.|.+|+..++.... .+|.||+|+|||.+....+.... .....+.++|+++|+..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999888 99999999999965443333331 1122333899999999999999888877
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.51 E-value=4.7e-07 Score=78.70 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=99.7
Q ss_pred CCChhhhhccccccc----------CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL----------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.+...|-+++-...+ +..+++-..||.||-.+..-.|++....+.. ++|+++.+..|-....+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHh
Confidence 356777766644331 3458999999999998766666666555443 7899999999999888888877
Q ss_pred hccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC---CCC--------CC-ccEEEEcCcchhhcc
Q 014486 138 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD---LSL--------KN-VRHFILDECDKMLES 205 (423)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~--------~~-~~~vVvDE~h~~~~~ 205 (423)
... .+.+..+.. .... .. ..-...|+++|+..|........ ..+ .+ =.+||+||||...+.
T Consensus 115 G~~--~i~v~~l~~---~~~~-~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 115 GAD--NIPVHPLNK---FKYG-DI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred CCC--cccceechh---hccC-cC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 543 222222211 0000 00 11123799999999877543211 110 11 237999999998763
Q ss_pred CC-------cHHHHHHHHHhCCCCceEEEEeccCCccHHH
Q 014486 206 LD-------MRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (423)
Q Consensus 206 ~~-------~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (423)
.. .......+...+| ..++|.+|||...+...
T Consensus 188 ~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 188 SSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRN 226 (303)
T ss_pred CccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCce
Confidence 22 1234455666665 45599999998766443
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.49 E-value=4.7e-07 Score=76.03 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCChhhhhcccccccCC--ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
++++-|++++..++.+. -.++.|+.|+|||.+. ..+...+...+ .++++++||...+..+.+.. ++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~g--~~v~~~apT~~Aa~~L~~~~--------~~~ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAAG--KRVIGLAPTNKAAKELREKT--------GIE 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHTT----EEEEESSHHHHHHHHHHH--------TS-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhCC--CeEEEECCcHHHHHHHHHhh--------Ccc
Confidence 46889999999997654 3788999999999753 33443333332 38999999998877765542 111
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC----CCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC
Q 014486 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~----~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~ 221 (423)
..|-..++....... ..+...++|||||+-.+. ...+..++.....
T Consensus 70 -------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~-----~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 70 -------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD-----SRQLARLLRLAKK 119 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B-----HHHHHHHHHHS-T
T ss_pred -------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC-----HHHHHHHHHHHHh
Confidence 122222222111110 114566799999998654 3456666676666
Q ss_pred -CceEEEEecc
Q 014486 222 -DKQVMMFSAT 231 (423)
Q Consensus 222 -~~~~v~~SAT 231 (423)
..++|++.-+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 5666766544
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.48 E-value=4.9e-07 Score=75.17 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc--
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI-- 144 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-- 144 (423)
...++.|..++..++..+-+++.||.|+|||+.++..+++.+..+. ..+++++-|..+..+. + ...|+-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~----l----GflpG~~~ 73 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGED----L----GFLPGDLE 73 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT------------SS-----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccc----c----ccCCCCHH
Confidence 3568899999999997777999999999999999888888776643 3388888887653111 1 111110
Q ss_pred -eEEEEEc-------Cc-chHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHH
Q 014486 145 -KVAVFYG-------GV-NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (423)
Q Consensus 145 -~~~~~~~-------~~-~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~ 215 (423)
+...+.. .. ........+.++ .|-+.....+. ...+. -.+||+|||+.+. ...+..+
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~--~Ie~~~~~~iR------Grt~~-~~~iIvDEaQN~t-----~~~~k~i 139 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNG--KIEIEPLAFIR------GRTFD-NAFIIVDEAQNLT-----PEELKMI 139 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTT--SEEEEEGGGGT------T--B--SEEEEE-SGGG-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcC--eEEEEehhhhc------Ccccc-ceEEEEecccCCC-----HHHHHHH
Confidence 0000000 00 000011111122 45554443332 12222 2789999999553 5678888
Q ss_pred HHhCCCCceEEEEecc
Q 014486 216 FKMTPHDKQVMMFSAT 231 (423)
Q Consensus 216 ~~~~~~~~~~v~~SAT 231 (423)
+.++..+.+++++.-.
T Consensus 140 lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 140 LTRIGEGSKIIITGDP 155 (205)
T ss_dssp HTTB-TT-EEEEEE--
T ss_pred HcccCCCcEEEEecCc
Confidence 8889888888877544
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.47 E-value=4e-07 Score=85.64 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=66.9
Q ss_pred HHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 59 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 59 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
+.+-..++..++..|..|+.++++..-.+|+||+|+|||.+..-.+++....... .+|+++|+..-+.|+++.+.+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~--~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAG--PVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCC--ceEEEcccchhHHHHHHHHHhc-
Confidence 4444556778999999999999999999999999999998765544444443322 7899999999999999888764
Q ss_pred ccCCCceEEEEEc
Q 014486 139 TYLPDIKVAVFYG 151 (423)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (423)
++++..+..
T Consensus 478 ----gLKVvRl~a 486 (935)
T KOG1802|consen 478 ----GLKVVRLCA 486 (935)
T ss_pred ----CceEeeeeh
Confidence 566665543
No 183
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.35 E-value=1.7e-06 Score=82.99 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=60.4
Q ss_pred HHhhhcCCccEEEEcCccccCCCCCCCC--------EEEEccCCCCcchhhhcccccCCCCCc---eEEEEEecCcccHH
Q 014486 331 YKGFKEGNKRILVATDLVGRGIDIERVN--------IVINYDMPDSADTYLHRVGRAGRFGTK---GLAITFVSSASDSD 399 (423)
Q Consensus 331 ~~~f~~~~~~ili~T~~~~~Gld~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~g~~---~~~~~~~~~~~~~~ 399 (423)
-++|..|+-.|-|-+.+++-||.++.-+ +-|-+.+|||....+|..||++|.+|- --++++..-..+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 3578899999999999999999986543 345689999999999999999998863 34555555566666
Q ss_pred HHHHHHHHHh
Q 014486 400 ILNQVSKFMF 409 (423)
Q Consensus 400 ~~~~~~~~~~ 409 (423)
.-..+.|.|+
T Consensus 930 FAS~VAKRLE 939 (1300)
T KOG1513|consen 930 FASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.29 E-value=2.6e-06 Score=71.42 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=89.9
Q ss_pred CcCCCCCHHHHHHHHhCCCCCCChhhhhccccccc---CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 48 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~---~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
|+....+.+++=.+.. ++ .+|+.|.+....+.. +++.+...-||.|||.+ ++|++.....++.. -+.+++|.
T Consensus 5 w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVpk- 79 (229)
T PF12340_consen 5 WDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVPK- 79 (229)
T ss_pred CCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcCH-
Confidence 4444444444333322 23 689999999988886 57899999999999987 46777766655544 77788884
Q ss_pred HHHHHHHHHHHHHhccCCCceEEE--EEcCcchHH----HHH----HHhcCCCcEEEechHHHHHHHhc-------CCC-
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAV--FYGGVNIKI----HKD----LLKNECPQIVVGTPGRILALARD-------KDL- 186 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~----~~~~~~~~ilv~T~~~l~~~~~~-------~~~- 186 (423)
+|..|..+.+..-....-+-.+.. +.-...... ... ..... -.|+++||+.++.+.-. ...
T Consensus 80 ~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 80 ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 799999888876543322222222 222222111 111 11112 38999999987653211 110
Q ss_pred ----------CCCCccEEEEcCcchhhc
Q 014486 187 ----------SLKNVRHFILDECDKMLE 204 (423)
Q Consensus 187 ----------~~~~~~~vVvDE~h~~~~ 204 (423)
-+.....-|+||+|.++.
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 022344578999997654
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.23 E-value=7.9e-06 Score=75.55 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=65.7
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
-++|.|.+|||||++++- ++..+.....+.+++++++...|...+.+.+..... +.
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~~--------------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN--PK--------------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc--cc---------------------
Confidence 378999999999987654 333332222233789999999998887776654320 00
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccC------CcHHHHHHHHHh
Q 014486 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL------DMRRDVQEIFKM 218 (423)
Q Consensus 165 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~------~~~~~~~~~~~~ 218 (423)
.....+..+..+.............+++|||||||++.... .....+..+.+.
T Consensus 59 -~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 -LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 01233334444433222223455778999999999997621 123445555554
No 186
>PRK10536 hypothetical protein; Provisional
Probab=98.15 E-value=4.6e-05 Score=65.38 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHH-------HHHHHHHHH
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY-------QICHEFERF 137 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~-------q~~~~~~~~ 137 (423)
++...+..|...+..+..+..+++.||+|+|||+.++...++.+.... ..++++.-|.....+ ...+.+..|
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 455678889999888888778999999999999988776776554432 325555556543211 011111111
Q ss_pred hccC-CCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHH
Q 014486 138 STYL-PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 216 (423)
Q Consensus 138 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~ 216 (423)
.... ..+.. +.+. ......+......|-+.....+ +.. .+ +-.+||+|||+.+. ...+..++
T Consensus 135 ~~pi~D~L~~--~~~~---~~~~~~~~~~~~~Iei~~l~ym----RGr--tl-~~~~vIvDEaqn~~-----~~~~k~~l 197 (262)
T PRK10536 135 FRPVYDVLVR--RLGA---SFMQYCLRPEIGKVEIAPFAYM----RGR--TF-ENAVVILDEAQNVT-----AAQMKMFL 197 (262)
T ss_pred HHHHHHHHHH--HhCh---HHHHHHHHhccCcEEEecHHHh----cCC--cc-cCCEEEEechhcCC-----HHHHHHHH
Confidence 1000 00000 0010 0001111111113444443322 222 22 22789999999663 36777788
Q ss_pred HhCCCCceEEEEe
Q 014486 217 KMTPHDKQVMMFS 229 (423)
Q Consensus 217 ~~~~~~~~~v~~S 229 (423)
..++.+.++|++.
T Consensus 198 tR~g~~sk~v~~G 210 (262)
T PRK10536 198 TRLGENVTVIVNG 210 (262)
T ss_pred hhcCCCCEEEEeC
Confidence 8888888766654
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=98.14 E-value=5.7e-06 Score=57.24 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=37.0
Q ss_pred CceEEEccCCCcchhHHHHHHhhccC--CCCCCeEEEEEecChHHHHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
+-++|.||+|+|||.+.+-.+..... ..+ +.++++++|++..+.++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 33666999999999766555555442 222 448999999999999888777
No 188
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.09 E-value=2.5e-05 Score=61.39 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=57.6
Q ss_pred EEcCCCCHHHHHHHHHhhhcCC-ccEEEEcCccccCCCCCC--CCEEEEccCCCC-------------------------
Q 014486 317 CIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIER--VNIVINYDMPDS------------------------- 368 (423)
Q Consensus 317 ~~~~~~~~~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~~--~~~vi~~~~~~s------------------------- 368 (423)
.+..+....+...+++.|++.. ..||+++..+++|+|+++ +++||..+.|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3344445556788899998654 369999988999999997 678998887741
Q ss_pred ------cchhhhcccccCCCCCceEEEEEecC
Q 014486 369 ------ADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 369 ------~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
...+.|.+||+-|..++-.+++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346999999998877777777764
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.07 E-value=1.3e-05 Score=75.35 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=51.9
Q ss_pred CCChhhhhcccccccCCc-eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
.+.+.|+.|+......++ .++.||+|+|||.+....+.+....++ ++|++.||..-+..+.+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHh
Confidence 567889999988888766 799999999999987665555554443 8999999999999988864
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.03 E-value=2.4e-05 Score=61.60 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhcCCc---cEEEEcCc--cccCCCCCC--CCEEEEccCCCC-----------------------------
Q 014486 325 EERLTRYKGFKEGNK---RILVATDL--VGRGIDIER--VNIVINYDMPDS----------------------------- 368 (423)
Q Consensus 325 ~~r~~~~~~f~~~~~---~ili~T~~--~~~Gld~~~--~~~vi~~~~~~s----------------------------- 368 (423)
.+...+++.|++... .||+++.- +++|+|+++ +++||..+.|..
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLF 110 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 344677888886443 58888876 999999987 678998887751
Q ss_pred --cchhhhcccccCCCCCceEEEEEecC
Q 014486 369 --ADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 369 --~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
.....|.+||+-|..++-.+++++++
T Consensus 111 ~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 111 DAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHhCccccCccceEEEEEEec
Confidence 11236999999999888777877765
No 191
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.03 E-value=3.9e-05 Score=75.02 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=84.5
Q ss_pred hhhhhcccccccCCceEEEccCCCcchhHHH--HHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEE
Q 014486 71 EVQHECIPQAILGMDVICQAKSGMGKTAVFV--LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148 (423)
Q Consensus 71 ~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 148 (423)
+.|+.++...+.++-.+|.|++|+|||.+.. +..+..........++++.+||..-+..+.+.+....... ...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l---~~~- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL---AAA- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc---ccc-
Confidence 6899999999998889999999999998642 2223222222223478999999988887776665432211 100
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc------CCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC
Q 014486 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~------~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~ 222 (423)
. ..... ..+-..|-.+++..... ...+...+++|||||+-.+. ...+..++..++..
T Consensus 224 -------~----~~~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-----~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -------E----ALIAA-LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-----LPLMAKLLKALPPN 286 (586)
T ss_pred -------h----hhhhc-cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-----HHHHHHHHHhcCCC
Confidence 0 00000 01223444444432211 11123357899999998553 34566777888888
Q ss_pred ceEEEEecc
Q 014486 223 KQVMMFSAT 231 (423)
Q Consensus 223 ~~~v~~SAT 231 (423)
.++|++.-.
T Consensus 287 ~rlIlvGD~ 295 (586)
T TIGR01447 287 TKLILLGDK 295 (586)
T ss_pred CEEEEECCh
Confidence 888876544
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.03 E-value=4.7e-05 Score=76.65 Aligned_cols=126 Identities=20% Similarity=0.200 Sum_probs=77.2
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
..+++-|++++..+..++-+++.|++|+|||.+. -.++..+...+....++++.||..-|..+.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~--------g~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT--------GLTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc--------CCcc
Confidence 3789999999999988888999999999999754 223333322221237888899987766543321 1110
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-----CCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-----KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-----~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~ 221 (423)
.|-.+++..... ........++||+||++.+.. ..+..++..++.
T Consensus 393 -------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~-----~~~~~Ll~~~~~ 442 (720)
T TIGR01448 393 -------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT-----WLALSLLAALPD 442 (720)
T ss_pred -------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH-----HHHHHHHHhCCC
Confidence 111111111000 001123567999999997643 345666667777
Q ss_pred CceEEEEecc
Q 014486 222 DKQVMMFSAT 231 (423)
Q Consensus 222 ~~~~v~~SAT 231 (423)
..++|++.-+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888876544
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.97 E-value=7.5e-05 Score=73.23 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=84.2
Q ss_pred ChhhhhcccccccCCceEEEccCCCcchhHHHH--HHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 70 SEVQHECIPQAILGMDVICQAKSGMGKTAVFVL--STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~--~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.+.|+.|+...+.++-.+|.|++|+|||.+... ..+..... .....++++.||..-|..+.+.+....... ..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~---~~- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQL---PL- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhcc---cc-
Confidence 478999998888888899999999999986422 22222211 122378889999988888877665433221 10
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHh------cCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCC
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR------DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~------~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~ 221 (423)
. ... ... ...-..|-.+++.... ....+.-.+++|||||+-.+. ...+..++..+++
T Consensus 229 ------~--~~~---~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~ll~al~~ 291 (615)
T PRK10875 229 ------T--DEQ---KKR-IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARLIDALPP 291 (615)
T ss_pred ------c--hhh---hhc-CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHHHHhccc
Confidence 0 000 000 0112234344433211 111122346899999998553 4566677778888
Q ss_pred CceEEEEecc
Q 014486 222 DKQVMMFSAT 231 (423)
Q Consensus 222 ~~~~v~~SAT 231 (423)
..++|++.-.
T Consensus 292 ~~rlIlvGD~ 301 (615)
T PRK10875 292 HARVIFLGDR 301 (615)
T ss_pred CCEEEEecch
Confidence 8888887654
No 194
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.94 E-value=5.8e-07 Score=87.06 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhc---CCccEEEEcCccccC
Q 014486 277 RKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE---GNKRILVATDLVGRG 351 (423)
Q Consensus 277 ~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~ili~T~~~~~G 351 (423)
..|..+++.. .+++++||..-++-.+-+.+.+...+ ....+.|..+..+|+.+++.|+. .....|++|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444333 46799999999999999999998888 88899999999999999999984 345688999988766
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.84 E-value=4e-05 Score=67.87 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=87.2
Q ss_pred CCCCCCChhhhhcccccccCCc--eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccC
Q 014486 64 SGFEHPSEVQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 141 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~--~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 141 (423)
.|+......|.-|+..++...- +.+.|+.|+|||+.++.+.+++....+...++++.=|+..+.+.+ .+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI--------GfL 295 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI--------GFL 295 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc--------CcC
Confidence 3677777889999998887533 788999999999999998888877666665878877876553221 111
Q ss_pred CCc---eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCC----------ccEEEEcCcchhhccCCc
Q 014486 142 PDI---KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN----------VRHFILDECDKMLESLDM 208 (423)
Q Consensus 142 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~----------~~~vVvDE~h~~~~~~~~ 208 (423)
|+. +-..|.+.. ......+.+. -=++.+.+...+....+.+.. =.+||+|||+.+.
T Consensus 296 PG~eEeKm~PWmq~i--~DnLE~L~~~----~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----- 364 (436)
T COG1875 296 PGTEEEKMGPWMQAI--FDNLEVLFSP----NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----- 364 (436)
T ss_pred CCchhhhccchHHHH--HhHHHHHhcc----cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-----
Confidence 211 000000000 0001111110 011233344444333332211 2479999999653
Q ss_pred HHHHHHHHHhCCCCceEEEEe
Q 014486 209 RRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 209 ~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+..+..+.....++|++.
T Consensus 365 pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 567888999999888777654
No 196
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.83 E-value=6.4e-05 Score=65.38 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=62.2
Q ss_pred HHHHhhhcCCccEEEEcCccccCCCCC--------CCCEEEEccCCCCcchhhhcccccCCCCCce---EEEEEecCccc
Q 014486 329 TRYKGFKEGNKRILVATDLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKG---LAITFVSSASD 397 (423)
Q Consensus 329 ~~~~~f~~~~~~ili~T~~~~~Gld~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~---~~~~~~~~~~~ 397 (423)
...+.|.+|+.+|+|.+.+++.|+.+. +-++-|.+.+|||....+|..||++|.||.. ..++...-..|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 346789999999999999999999875 3455778999999999999999999999853 22223333456
Q ss_pred HHHHHHHHHHHh
Q 014486 398 SDILNQVSKFMF 409 (423)
Q Consensus 398 ~~~~~~~~~~~~ 409 (423)
......+.+.|.
T Consensus 132 ~Rfas~va~rL~ 143 (278)
T PF13871_consen 132 RRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHh
Confidence 666677766664
No 197
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.76 E-value=6.7e-05 Score=73.55 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred CcEEEEEcChhhHHHHHHHHHhC-------CCCeEEEcCCCCHHHHHHHHHhhhc--------CCccEEEEcCccccCCC
Q 014486 289 NQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKE--------GNKRILVATDLVGRGID 353 (423)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~ili~T~~~~~Gld 353 (423)
..+|+|+++....+.+....+.. +...+.+... +..+-.+++..|.+ |..-.-||--..++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 34899999987777765544432 2222222222 33444444555542 22234456688999999
Q ss_pred CCC--CCEEEEccCCCC--------------------------------------cchhhhcccccCCCCCceEEEEEec
Q 014486 354 IER--VNIVINYDMPDS--------------------------------------ADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 354 ~~~--~~~vi~~~~~~s--------------------------------------~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
+.+ .+.||..++|.- ..-.-|++||+-|.-++=.++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 975 678999888751 1123599999999877756666777
Q ss_pred Cccc
Q 014486 394 SASD 397 (423)
Q Consensus 394 ~~~~ 397 (423)
...+
T Consensus 721 ~Rfe 724 (945)
T KOG1132|consen 721 DRFE 724 (945)
T ss_pred chhh
Confidence 5444
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.76 E-value=4.1e-05 Score=69.87 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=74.0
Q ss_pred CChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-CCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
+++-|.+++.. ..++++|.|+.|||||.+.+--++..+... ..+.++|++++|+..+..+.+++...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 46889999987 677899999999999998766655554443 2344899999999999999999988654321000
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCCCCC-CCccEEEEcCcc
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSL-KNVRHFILDECD 200 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~-~~~~~~~~~-~~~~~vVvDE~h 200 (423)
............. ..+.|+|.+.+.. +++...... -.-.+-++|+..
T Consensus 77 -----~~~~~~~~~~~~~-~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 -----SDNERLRRQLSNI-DRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -----TT-HHHHHHHHHC-TTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred -----ccccccccccccc-chheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000111111122 3788999988766 333211111 122346666665
No 199
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.73 E-value=0.00031 Score=72.30 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=74.1
Q ss_pred CCChhhhhcccccccCCc-eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
.+++-|+.++..++.+++ ++|.|+.|+|||++ +-.+...+... +.+++.+.||-.-+..+.+. .++.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~--------tGi~- 413 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEGG--------SGIA- 413 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhhc--------cCcc-
Confidence 699999999999998655 78999999999975 33333333222 23788999997655443320 0111
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQV 225 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~ 225 (423)
-.|-.+|+.-.......+...++|||||+-.+.. ..+..++... ....++
T Consensus 414 ------------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~garv 464 (988)
T PRK13889 414 ------------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAKV 464 (988)
T ss_pred ------------------------hhhHHHHHhhhcccccccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCEE
Confidence 1122223221112223355678999999996643 2344455433 446677
Q ss_pred EEEecc
Q 014486 226 MMFSAT 231 (423)
Q Consensus 226 v~~SAT 231 (423)
|++.=+
T Consensus 465 VLVGD~ 470 (988)
T PRK13889 465 VLVGDP 470 (988)
T ss_pred EEECCH
Confidence 776554
No 200
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.70 E-value=0.00014 Score=63.03 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=37.4
Q ss_pred CCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 186 ~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
.....++.+|+||||.+.. +....+++.....+...++++++-.+.+
T Consensus 125 ~~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred CCCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 3456779999999999975 6777788888888888888888776543
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.66 E-value=0.00074 Score=68.48 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=44.0
Q ss_pred CCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHH
Q 014486 68 HPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (423)
.+++-|+.++..++.+ +-++|.|++|+|||...- .+...+... +.++++++||..-+..+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~~--g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEAA--GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHhC--CCeEEEEeCcHHHHHHHH
Confidence 6899999999998874 558999999999997532 233333222 237889999976655543
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.60 E-value=0.0002 Score=73.01 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=91.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCC-----------C----CCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN-----------P----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----------~----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
|+.++++..+|+|||..-+...+...... + ....+|||+|. ++..||.+++...... ++++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 56789999999999988766555432110 0 11267999996 7889999999887754 46888
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCC------------------CC--CccEEEEcCcchhhccCC
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS------------------LK--NVRHFILDECDKMLESLD 207 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~------------------~~--~~~~vVvDE~h~~~~~~~ 207 (423)
.+.|-.+......... ..+||+++|++.|..-+.+.... +- .|=.|++|||+.+-.
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--- 526 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--- 526 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc---
Confidence 8877543322111111 22799999999997644332110 11 111399999997743
Q ss_pred cHHHHHHHHHhCCCCceEEEEeccCCccH
Q 014486 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (423)
......+....++... .=++|+||-..+
T Consensus 527 ssS~~a~M~~rL~~in-~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAIN-RWCVTGTPIQKI 554 (1394)
T ss_pred hHHHHHHHHHHhhhhc-eeeecCCchhhh
Confidence 4444555555554333 567899975443
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.60 E-value=0.0009 Score=69.48 Aligned_cols=138 Identities=15% Similarity=0.105 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 52 LLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 52 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
.+++..++.....++ .+++-|+.++..+.. ++-.+|.|+.|+|||.+. -.+...+...+ .+++.+.||-.-+..+
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~G--~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAAG--YRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHcC--CeEEEEcCcHHHHHHH
Confidence 445555555444443 799999999998865 344899999999999753 23333332222 2788899997765554
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 131 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
.+.. ++.. .|-.+|+.........+..-++|||||+..+. ..
T Consensus 442 ~e~~--------Gi~a-------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~-----~~ 483 (1102)
T PRK13826 442 EKEA--------GIQS-------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA-----SR 483 (1102)
T ss_pred HHhh--------CCCe-------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC-----HH
Confidence 3211 2221 12222211111122345556799999999653 33
Q ss_pred HHHHHHHhCC-CCceEEEEecc
Q 014486 211 DVQEIFKMTP-HDKQVMMFSAT 231 (423)
Q Consensus 211 ~~~~~~~~~~-~~~~~v~~SAT 231 (423)
.+..++.... ...++|++.-+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4444555443 46677776554
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.56 E-value=0.00015 Score=60.53 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=24.0
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
-.++.||+|+|||...+-.+...... + .+++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-g--~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-G--MKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-C--CeEEEEecc
Confidence 46889999999997665544433333 2 277777663
No 205
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.51 E-value=0.00058 Score=67.91 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHhCCCCCCChhhhhcccccccCCc-eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 51 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
..+.|...+. -+..++.-|++|+..++..++ .+|.|=+|+|||.+....+--....++ ++|+.+=|..-+..
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHH
Confidence 3455555553 233788999999999998776 889999999999865433322222222 78888888777777
Q ss_pred HHHHHHHHhccCCCceEEEEEcCcchHHHHHH-----------------HhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 130 ICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL-----------------LKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
+.-.++.+ ++.+..+..+.....+.+. +.+. +.|+.||--.+-+ ..+....|+
T Consensus 729 ILiKL~~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~-~~IVa~TClgi~~----plf~~R~FD 798 (1100)
T KOG1805|consen 729 ILIKLKGF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQ-TSIVACTCLGINH----PLFVNRQFD 798 (1100)
T ss_pred HHHHHhcc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCC-CcEEEEEccCCCc----hhhhccccC
Confidence 66555544 3333333333322222222 2222 4677777433322 122345689
Q ss_pred EEEEcCcchhhc
Q 014486 193 HFILDECDKMLE 204 (423)
Q Consensus 193 ~vVvDE~h~~~~ 204 (423)
++|+|||-.+..
T Consensus 799 ~cIiDEASQI~l 810 (1100)
T KOG1805|consen 799 YCIIDEASQILL 810 (1100)
T ss_pred EEEEcccccccc
Confidence 999999998764
No 206
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.47 E-value=0.00034 Score=54.61 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=13.4
Q ss_pred CCceEEEccCCCcchhHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~ 102 (423)
++.++|.||+|+|||...-.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45589999999999976433
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.47 E-value=0.0043 Score=56.69 Aligned_cols=135 Identities=13% Similarity=0.218 Sum_probs=76.1
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
++.+.+.||||-|||.+..-.+.......+....+||-+.+--.+. .++++.++... ++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im-~vp----------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA--VEQLKTYADIM-GVP----------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH--HHHHHHHHHHh-CCc-----------------
Confidence 5668999999999998754333333323333336677666543322 23344444333 333
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc-cHHHHHH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVCK 241 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~~ 241 (423)
=.++-+|.-|...+. .+.++++|.||=+-+--.+......+..+........-.+.+|||... ++...+.
T Consensus 263 -----~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 263 -----LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -----eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 344555555554333 345557888887764322233344555555555455567889999864 4455555
Q ss_pred HhccC
Q 014486 242 KFMQD 246 (423)
Q Consensus 242 ~~~~~ 246 (423)
.|..-
T Consensus 334 ~f~~~ 338 (407)
T COG1419 334 QFSLF 338 (407)
T ss_pred HhccC
Confidence 55443
No 208
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.42 E-value=0.00028 Score=65.29 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=45.2
Q ss_pred CCCCCChhhhhcccccc----cCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHH
Q 014486 65 GFEHPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.|...+|.|.+=...+. .+.+.++.+|+|+|||.+.+-.++....+.+ ...+.++.+-|..-.+....+++.+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 34566777765443333 3677999999999999876655555433333 2236677766665555555555544
No 209
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.003 Score=60.80 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred HHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCC-------CeEEEcCCCCHHHHHHHHHhhh----cCCccEEEEc-
Q 014486 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQEERLTRYKGFK----EGNKRILVAT- 345 (423)
Q Consensus 278 ~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~~~~~ili~T- 345 (423)
.+.++....+ +-+++|+++.+....+.+.....|+ +.+.+...-+ -..+++.|. .|...+|++.
T Consensus 620 ~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVV 695 (821)
T KOG1133|consen 620 SISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVV 695 (821)
T ss_pred HHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEe
Confidence 3444444445 7799999999999999988876543 2333333333 344555554 3555577654
Q ss_pred -CccccCCCCCC--CCEEEEccCCCC--------------------------------cchhhhcccccCCCCCceEEEE
Q 014486 346 -DLVGRGIDIER--VNIVINYDMPDS--------------------------------ADTYLHRVGRAGRFGTKGLAIT 390 (423)
Q Consensus 346 -~~~~~Gld~~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~~~~~~ 390 (423)
..+++|||+.+ +++|+.+++|.. +...-|.+|||-|.-++-.+++
T Consensus 696 GGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~ 775 (821)
T KOG1133|consen 696 GGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIY 775 (821)
T ss_pred ccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEE
Confidence 78999999987 889999998862 1123599999999888888888
Q ss_pred EecCcccHH
Q 014486 391 FVSSASDSD 399 (423)
Q Consensus 391 ~~~~~~~~~ 399 (423)
+++..+...
T Consensus 776 LlD~RY~~p 784 (821)
T KOG1133|consen 776 LLDKRYARP 784 (821)
T ss_pred EehhhhcCc
Confidence 888766533
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0016 Score=60.24 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=64.0
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCC--CCCCeEEEEEecC-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~--~~~~~~~lil~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (423)
+.+++.||||+|||.+..-.+...... ..+...+++-+.+ +.-+..+ ++.++... ++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceEe------------
Confidence 458899999999998764333222211 1222233343433 3333322 34444332 333221
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC-ceEEEEeccCCcc
Q 014486 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-KQVMMFSATLSKE 235 (423)
Q Consensus 161 ~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~-~~~v~~SAT~~~~ 235 (423)
+-+++.+...+.. +.+.++|++|++.+...+......+..++...... ..++.+|||....
T Consensus 239 ----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 ----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1133444443332 25678999999998753222234555555554433 4578899998743
No 211
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00065 Score=59.35 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.5
Q ss_pred cccCCceEEEccCCCcchhHHHH
Q 014486 80 AILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
+..+.++++.||+|+|||..+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 34567899999999999976544
No 212
>PRK14974 cell division protein FtsY; Provisional
Probab=97.30 E-value=0.003 Score=57.31 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=41.2
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhc
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
+.++|++|.+.++..+......+..+.+...+...++.++||...+....++.+.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4579999999988654556677777777777777788899998776666555544
No 213
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.28 E-value=0.00097 Score=57.40 Aligned_cols=87 Identities=30% Similarity=0.442 Sum_probs=66.9
Q ss_pred CCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcC-cchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCC
Q 014486 112 PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG-VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN 190 (423)
Q Consensus 112 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~ 190 (423)
.+.|.+|||+.+---|..+...++.+... +..++-+..- ....++...+.+...+|.||||+++..+++.+.+.+.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 45678999999877777777777766321 2234333333 36677778888777899999999999999999999999
Q ss_pred ccEEEEcCcc
Q 014486 191 VRHFILDECD 200 (423)
Q Consensus 191 ~~~vVvDE~h 200 (423)
+.+||+|--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999876
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.25 E-value=0.0005 Score=68.31 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
.+++.|..++..++.. ...+|.||+|+|||.+..-.+.+....+ .++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 5688999999998876 5689999999999976554443333322 2899999999999998888765
No 215
>PRK05642 DNA replication initiation factor; Validated
Probab=97.24 E-value=0.00096 Score=57.79 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=27.2
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
+.+++|+|++|.+.....+...+-.++..+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 446899999998765334455566666554443334566666443
No 216
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.21 E-value=0.0017 Score=56.37 Aligned_cols=18 Identities=11% Similarity=0.253 Sum_probs=15.1
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
..+++.||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 568999999999997543
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0017 Score=51.17 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
+..+++.||+|+|||..... ++..+.... ..++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEc
Confidence 45689999999999986543 333333222 14566666543
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.18 E-value=0.0019 Score=54.02 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHh
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (423)
.++++|++|-+-+...+......+..+.....+..-.+.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 3457899999876543334556677777777777778899999887655544443
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0044 Score=56.93 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
+..+++.||||+|||.+....+.......+.. ++.+++ +...-.--.+.++.|.... ++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~~-------------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLT-TDSYRIGGHEQLRIFGKIL-GVPVHA-------------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEe-cccccccHHHHHHHHHHHc-CCceEe--------------
Confidence 56689999999999987654333322222212 333333 2221111123344444333 333322
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHH-HHHH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR-PVCK 241 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~-~~~~ 241 (423)
+.++..+...+. .+.+.++|+||.+-+.-.+......+..+.........++.+|||...... ..+.
T Consensus 200 --------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 200 --------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred --------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 223333333222 234557899999975422112223333332323334457889999865543 3444
Q ss_pred Hh
Q 014486 242 KF 243 (423)
Q Consensus 242 ~~ 243 (423)
.|
T Consensus 268 ~f 269 (374)
T PRK14722 268 AY 269 (374)
T ss_pred HH
Confidence 44
No 220
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.17 E-value=0.0021 Score=64.32 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
-..+++-|++++..- ..+++|.|..|||||.+.+--+...+.... .+.++|+++.++..|..+.+++...... .++
T Consensus 194 ~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~-~~v 270 (684)
T PRK11054 194 SSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT-EDI 270 (684)
T ss_pred CCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-CCc
Confidence 347999999998643 356899999999999886554443332221 2338999999999999999988776531 244
Q ss_pred eEEEEEc
Q 014486 145 KVAVFYG 151 (423)
Q Consensus 145 ~~~~~~~ 151 (423)
.+..+|+
T Consensus 271 ~v~TFHS 277 (684)
T PRK11054 271 TARTFHA 277 (684)
T ss_pred EEEeHHH
Confidence 4444444
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0073 Score=55.43 Aligned_cols=131 Identities=14% Similarity=0.190 Sum_probs=67.8
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe-cCh-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC-HTR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (423)
+.+.+.||+|+|||......+.... ..+ ...+++-+ |.+ ..+.|+. .+.... ++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~G-kkVglI~aDt~RiaAvEQLk----~yae~l-gip---------------- 298 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKK-KTVGFITTDHSRIGTVQQLQ----DYVKTI-GFE---------------- 298 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcC-CcEEEEecCCcchHHHHHHH----HHhhhc-CCc----------------
Confidence 4578999999999987554433332 222 21334444 333 2334433 332221 222
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc-cHHHHH
Q 014486 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVC 240 (423)
Q Consensus 162 ~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~~ 240 (423)
-+.+.++..+...+..... ..++++|++|-+=+...+......+..+.....+..-++.+|||... ++...+
T Consensus 299 ------v~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~ 371 (436)
T PRK11889 299 ------VIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 371 (436)
T ss_pred ------EEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHH
Confidence 2223455555554432110 12468999999876543223344455555544444446668887654 445555
Q ss_pred HHhc
Q 014486 241 KKFM 244 (423)
Q Consensus 241 ~~~~ 244 (423)
+.|.
T Consensus 372 ~~F~ 375 (436)
T PRK11889 372 TNFK 375 (436)
T ss_pred HHhc
Confidence 5544
No 222
>PRK08181 transposase; Validated
Probab=97.14 E-value=0.0019 Score=56.73 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=26.9
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
-.++++++.||+|+|||..+.....+... .+. ++++ ++...|..+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~--~v~f-~~~~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIE-NGW--RVLF-TRTTDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHH-cCC--ceee-eeHHHHHHHH
Confidence 35678999999999999755433322222 221 4444 4445555544
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=97.11 E-value=0.0016 Score=56.33 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCC-CCceEEEEeccCCcc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKE 235 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT~~~~ 235 (423)
.+.+++++||+|.+.....+...+..++.... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 35578999999988653334444444444333 244566777776543
No 224
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.06 E-value=0.0053 Score=48.64 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
++.+++.||+|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999653
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.04 E-value=0.00085 Score=67.47 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=54.3
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhc
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 139 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (423)
.+++-|++++.+. ...++|.|++|||||.+.+.-+...+.. +-.+.++|+++.|+..|.++.+++.....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999998753 4678899999999999876666655543 22234899999999999999999987653
No 226
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.02 E-value=0.054 Score=60.99 Aligned_cols=236 Identities=12% Similarity=0.138 Sum_probs=119.9
Q ss_pred CCChhhhhcccccccCC--ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
.+++-|+.++..++... -.+|.|+.|+|||.+. -.+...+...+ .++++++|+..-+.++.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~G--~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQG--YEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 68899999999988864 4899999999999753 23333333222 388999999877666654332110
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCce
Q 014486 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQ 224 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~ 224 (423)
..+..+...+.. ..-..|...|+ .....+..-++|||||+-.+. ...+..++... ....+
T Consensus 499 -------~Ti~~~l~~l~~---~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~-----~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 -------STFITWVKNLFN---DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS-----NNELLKLIDKAEQHNSK 559 (1960)
T ss_pred -------hhHHHHHHhhcc---cccchhHHHhh----cccCCCCCCCEEEEECCCCCC-----HHHHHHHHHHHhhcCCE
Confidence 001111111111 11122333333 223344567899999999653 34455555544 45788
Q ss_pred EEEEeccC--C----ccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHH-HHHHHhh-cCCcEEEEEc
Q 014486 225 VMMFSATL--S----KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL-NDLLDAL-DFNQVVIFVK 296 (423)
Q Consensus 225 ~v~~SAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~~-~~~~~ivf~~ 296 (423)
+|++.-+- + ......+.... ...+.+.... .....+ .+.......+...+ ..++... ...+++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~g--v~t~~l~~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGG--VTTYAWVDTK-QQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCC--CcEEEeeccc-ccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88876652 1 12223333321 1111111111 110111 11122222222222 2333322 3345899999
Q ss_pred ChhhHHHHHHHHHh----CCC------CeEEEc-CCCCHHHHHHHHHhhhcCC
Q 014486 297 SVSRAAELNKLLVE----CNF------PSICIH-SGMSQEERLTRYKGFKEGN 338 (423)
Q Consensus 297 ~~~~~~~l~~~L~~----~~~------~~~~~~-~~~~~~~r~~~~~~f~~~~ 338 (423)
+....+.+....+. .|. ....+. ..++..++... ..|+.|.
T Consensus 635 t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 635 THREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred CcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 88887777666543 332 222232 35666666633 5565544
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.015 Score=55.04 Aligned_cols=129 Identities=17% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCceEEEccCCCcchhHHHHHHhhcc-CCCCCCeEEEEE-ecC-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVL-CHT-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil-~P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (423)
++.+++.||||+|||.+....+.... ...+ . ++.++ +.+ +.-+ .+.++.+.... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~-~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK-K-KVALITLDTYRIGA---VEQLKTYAKIM-GIPV------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-C-eEEEEECCccHHHH---HHHHHHHHHHh-CCce-------------
Confidence 45688999999999987654333332 2222 2 34443 332 3212 12333333222 2222
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCcc-HH
Q 014486 160 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKE-IR 237 (423)
Q Consensus 160 ~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~-~~ 237 (423)
..+.++..+...+.. +.+.++|+||-+-+...+......+..+.... .+....+.+|||.... +.
T Consensus 282 ---------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 222344444444432 23578999999975433222334455555522 2334578899988753 33
Q ss_pred HHHHHh
Q 014486 238 PVCKKF 243 (423)
Q Consensus 238 ~~~~~~ 243 (423)
.....+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 443433
No 228
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.96 E-value=0.0021 Score=59.74 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=41.0
Q ss_pred CChhhhhccccc------ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 69 PSEVQHECIPQA------ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 69 ~~~~Q~~~i~~~------~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
+++-|+.++..+ ..+..+++.|+-|+|||+.+- .+...+... +..+++++||..-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~~--~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRSR--GKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhccc--cceEEEecchHHHHHhc
Confidence 567888888777 567789999999999997542 233333322 23788899987654443
No 229
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.96 E-value=0.0024 Score=65.07 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhccC-CCc
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYL-PDI 144 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 144 (423)
..+++-|++++.+. ...++|.|..|||||.+..--+...+...+ .+.++|+++-|+..|..+.+++.++.... .++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~~ 80 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGM 80 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcccccCc
Confidence 35889999998753 467999999999999987666655543322 33489999999999999999998876431 234
Q ss_pred eEEEEEc
Q 014486 145 KVAVFYG 151 (423)
Q Consensus 145 ~~~~~~~ 151 (423)
.+..+|+
T Consensus 81 ~i~TfHs 87 (715)
T TIGR01075 81 WIGTFHG 87 (715)
T ss_pred EEEcHHH
Confidence 5555544
No 230
>PRK08727 hypothetical protein; Validated
Probab=96.93 E-value=0.0023 Score=55.43 Aligned_cols=47 Identities=4% Similarity=0.070 Sum_probs=25.9
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccH
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (423)
+..+||+||+|.+..+......+-.+.... ....++|+.|-.+|...
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 346899999998865333333333343332 22345565555555544
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.00087 Score=63.27 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=73.5
Q ss_pred EccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhcc-CCCceEEEEEcCcchHHHHHH---Hhc
Q 014486 89 QAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDL---LKN 164 (423)
Q Consensus 89 ~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~ 164 (423)
.+.||||||++..-.|++....+-. .-|+.|......+-....+..-.+. + -..-....++..++..... -.+
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeecccCccC
Confidence 4679999999876666665554332 5677777766655544333211000 0 0000011111111111000 023
Q ss_pred CCCcEEEechHHHHHHHhcCCC------CCCCccE-EEEcCcchhhcc--------CCcHHHHHHH---HHhCCCCceEE
Q 014486 165 ECPQIVVGTPGRILALARDKDL------SLKNVRH-FILDECDKMLES--------LDMRRDVQEI---FKMTPHDKQVM 226 (423)
Q Consensus 165 ~~~~ilv~T~~~l~~~~~~~~~------~~~~~~~-vVvDE~h~~~~~--------~~~~~~~~~~---~~~~~~~~~~v 226 (423)
....|.++|.+.|...+.+... ++.+.++ .+-||+|++... ......+... ....+++.-++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 3368999999999875543322 2444554 567999998642 1111112211 22234455678
Q ss_pred EEeccCCcc
Q 014486 227 MFSATLSKE 235 (423)
Q Consensus 227 ~~SAT~~~~ 235 (423)
.+|||.|.+
T Consensus 160 ef~at~~k~ 168 (812)
T COG3421 160 EFSATIPKE 168 (812)
T ss_pred hhhhcCCcc
Confidence 899999854
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.89 E-value=0.0028 Score=64.56 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=60.3
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhcc-CCCce
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 145 (423)
.+++-|++++.+. ...++|.|..|||||.+.+--+...+.. +-.+.++|+++-|+..|.++.+++.++... ..++.
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~~~ 86 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGGMW 86 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCCCE
Confidence 5899999998753 4678999999999998876655554432 223348999999999999999999887643 12345
Q ss_pred EEEEEc
Q 014486 146 VAVFYG 151 (423)
Q Consensus 146 ~~~~~~ 151 (423)
+..+|+
T Consensus 87 i~TfHs 92 (721)
T PRK11773 87 VGTFHG 92 (721)
T ss_pred EEcHHH
Confidence 555555
No 233
>PHA02533 17 large terminase protein; Provisional
Probab=96.87 E-value=0.0087 Score=58.11 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc-eE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI-KV 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~ 146 (423)
.|.|+|+..+..+..++-.++..+=..|||.+....++......+ +..+++++|+..-|..+.+.++.+....|.+ ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 688999999887755556788888999999876654443333222 2389999999999999988888776554432 11
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
.....+ .....+.++ ..|.+.|.+. ....-.+..++++||+|.+.
T Consensus 138 ~i~~~~----~~~I~l~NG-S~I~~lss~~-------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 138 GIVEWN----KGSIELENG-SKIGAYASSP-------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred ceeecC----ccEEEeCCC-CEEEEEeCCC-------CccCCCCCceEEEeccccCC
Confidence 110000 000111233 3554444321 11122345689999999663
No 234
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.70 E-value=0.0068 Score=51.89 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccH
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (423)
...+++++|++|.+.+.......+..++..+ ....++|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 3567899999999876333344454444443 34567777777777654
No 235
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.67 E-value=0.007 Score=52.26 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.4
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.+..+++.||+|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999997653
No 236
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.66 E-value=0.0087 Score=58.67 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHH-HHHHHHhccCCCc
Q 014486 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC-HEFERFSTYLPDI 144 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~ 144 (423)
..+|||.+.++.+-.. +.+++..++-+|||.+.+..+...+...+. .+|++.||..+|..+. +++..+....|.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5678999888877664 468999999999999766666666665554 6899999999999976 6666666555544
Q ss_pred eEEEEE---cCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 145 KVAVFY---GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 145 ~~~~~~---~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+-.+-. .........+.+. +. .+.+....+- ..+.-..++++++||++.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-gg-~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-GG-FLYLVGANSP------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecC-CC-EEEEEeCCCC------cccccCCcCEEEEechhhccc
Confidence 322111 1111111222222 21 3443332211 123335678999999998843
No 237
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.65 E-value=0.0027 Score=51.66 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=51.5
Q ss_pred EEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcch-HHHHHHHhcC
Q 014486 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNI-KIHKDLLKNE 165 (423)
Q Consensus 87 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (423)
++.|+-|-|||.+.-+.+........ .+++|.+|+.+-++...+.+..-.... +.+. .... ..........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~-----~~~~~~~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKAL-GYKE-----EKKKRIGQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC--------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhcccc-cccc-----ccccccccccccccc
Confidence 57899999999775554443333322 378999999988777766554332211 1111 0000 0000011111
Q ss_pred CCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 166 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 166 ~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
...|-+..|+.+.... ...+++|||||=.+ -.+.+..+.... . .+++|.|.-
T Consensus 73 ~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaI-----p~p~L~~ll~~~---~-~vv~stTi~ 124 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK-------PQADLLIVDEAAAI-----PLPLLKQLLRRF---P-RVVFSTTIH 124 (177)
T ss_dssp CCC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCS---S-EEEEEEEBS
T ss_pred cceEEEECCHHHHhCc-------CCCCEEEEechhcC-----CHHHHHHHHhhC---C-EEEEEeecc
Confidence 2477777777765321 23478999999754 234444444332 3 566677763
No 238
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.61 E-value=0.0032 Score=63.79 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=53.8
Q ss_pred CChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhc
Q 014486 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFST 139 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (423)
+++-|++++.+ ...+++|.|..|||||.+.+--+...+.. ...+.++|+++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67899999865 35679999999999999877666665543 22334789999999999999998877653
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.016 Score=52.80 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=29.0
Q ss_pred CCChhhhhcccccccC----CceEEEccCCCcchhHHHHHHhhc
Q 014486 68 HPSEVQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~----~~~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
.++|+|...+..+... +..++.||.|.|||..+...+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 3578888888887764 348899999999997665433333
No 240
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0071 Score=49.32 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=51.5
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
=.++.+|+.||||.-.+-.+......+. ++++..|...- ++ +.....-+.|.+.
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~---------R~-----~~~~V~Sr~G~~~--------- 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDT---------RY-----GVGKVSSRIGLSS--------- 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccc---------cc-----ccceeeeccCCcc---------
Confidence 3689999999999864443333333222 78888886431 11 1111111222211
Q ss_pred CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 165 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 165 ~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
..++|-.+..+...+........ +++|.+|||+=+
T Consensus 60 --~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~ 94 (201)
T COG1435 60 --EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF 94 (201)
T ss_pred --cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC
Confidence 35666677777776665433322 789999999944
No 241
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.58 E-value=0.012 Score=63.52 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=44.4
Q ss_pred CCChhhhhcccccccC--CceEEEccCCCcchhHH--HHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~--~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
.+++-|+.++..++.+ +-++|.|..|+|||.+. ++.++..+... .+..++.+.||..-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~-~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES-ERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc-cCceEEEEechHHHHHHH
Confidence 6899999999999975 55899999999999863 22233332222 223788899998766554
No 242
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.57 E-value=0.0083 Score=57.99 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=74.8
Q ss_pred CceEEEccCCCcchhHHHHHHhhcc-CCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
+.+++..|=|-|||......++..+ .....+..++++++++.-|..+.+.+..+....|.+....- .+.+
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~---------~~~~ 93 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRKK---------PKII 93 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccchh---------hhhh
Confidence 3488888999999976544444333 33334458999999999999999999988776544332110 0000
Q ss_pred hcCCCcEEEechHHHHHHHhc--CCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 163 KNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
....-.|.....+.++..+.. ....-.+..++|+||+|...+ ......+..-... .++++++.+|
T Consensus 94 ~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~-~~~~~~l~~g~~~-r~~pl~~~IS 160 (477)
T PF03354_consen 94 KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD-DELYDALESGMGA-RPNPLIIIIS 160 (477)
T ss_pred hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC-HHHHHHHHhhhcc-CCCceEEEEe
Confidence 010013332222222221111 122234568999999998765 2233333333333 3355555554
No 243
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.52 E-value=0.0024 Score=68.04 Aligned_cols=94 Identities=23% Similarity=0.365 Sum_probs=76.2
Q ss_pred cEEEEEcChhhHHHHHHHHHhCC-CCeEEEcCCCC-----------HHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 290 QVVIFVKSVSRAAELNKLLVECN-FPSICIHSGMS-----------QEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
..++|++....+....+.++... ..+..+.|.+. ...+.+++..|.....++|++|+++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46999999999988888887652 22222433322 3335778899999999999999999999999999
Q ss_pred CEEEEccCCCCcchhhhcccccCCCC
Q 014486 358 NIVINYDMPDSADTYLHRVGRAGRFG 383 (423)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g 383 (423)
+.++.++.|.....|+|..||+.+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997754
No 244
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.52 E-value=0.02 Score=52.74 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
...++||+||+|.+.. .....+..++...+...++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4567999999998754 334455566665555666665543
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.0098 Score=56.31 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.4
Q ss_pred CceEEEccCCCcchhHHHHHHhh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQ 106 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~ 106 (423)
+..++.||.|+|||.++.+.+-.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34799999999999876554333
No 246
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.49 E-value=0.02 Score=62.82 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCChhhhhcccccccCC--ceEEEccCCCcchhHH--HHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 68 HPSEVQHECIPQAILGM--DVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~--~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
.+++-|+.++..++.+. -++|.|..|+|||... ++.++..+... .+..++.++||..-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~-~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPES-ERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcc-cCceEEEECCcHHHHHHH
Confidence 68999999999999864 4899999999999763 22222222222 233788899998766554
No 247
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.018 Score=55.00 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=25.1
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||+|.+.. .....+.+.++.-++...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~--~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN--SAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 5788999999998864 22334455555555555555554
No 248
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.46 E-value=0.008 Score=57.35 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=27.1
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (423)
+.+++.|++|+|||... .++...+.....+.+++++.+ ..+...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999643 334443332222336666555 455544443
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.45 E-value=0.015 Score=55.79 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=24.7
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
+.+++.||+|+|||...-. +...+.....+.+++++.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 4589999999999975433 3333332222225555543 444433
No 250
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.019 Score=58.63 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++++||||+|.|.. .-...+.++++..+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 5678999999999875 44455667777777777677665
No 251
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.40 E-value=0.0058 Score=51.07 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEE
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (423)
....+.||+||||.+.. +....+++......+..++.+.
T Consensus 111 ~grhKIiILDEADSMT~--gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA--GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhh--HHHHHHHHHHHHHcccchhhhh
Confidence 36678999999999975 6666777777766665554443
No 252
>PRK08116 hypothetical protein; Validated
Probab=96.39 E-value=0.023 Score=50.24 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=25.3
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
..+++.|++|+|||..+. ++...+...+. .++ .++...+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~~~--~v~-~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEKGV--PVI-FVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHcCC--eEE-EEEHHHHHHHH
Confidence 359999999999997654 34444433321 344 44444554433
No 253
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.38 E-value=0.037 Score=46.06 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.9
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
++|.||+|+|||...+-.+...+..+. +++|++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999876554554443322 6777765 35566666666655
No 254
>PF13173 AAA_14: AAA domain
Probab=96.38 E-value=0.046 Score=42.35 Aligned_cols=37 Identities=8% Similarity=0.228 Sum_probs=24.4
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
.-.+|++||+|.+ .++...+..+.... ++.+++ +|++
T Consensus 61 ~~~~i~iDEiq~~---~~~~~~lk~l~d~~-~~~~ii-~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYL---PDWEDALKFLVDNG-PNIKII-LTGS 97 (128)
T ss_pred CCcEEEEehhhhh---ccHHHHHHHHHHhc-cCceEE-EEcc
Confidence 4468999999988 45666777776654 344444 4444
No 255
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.022 Score=56.76 Aligned_cols=40 Identities=8% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
..++++||||+|.+.. .-...+.+.++.-+....+|+.|-
T Consensus 118 gr~KVIIIDEah~LT~--~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN--HAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCH--HHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4678999999998865 223445555666565665665553
No 256
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.017 Score=54.94 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=27.9
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccHH
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 237 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~ 237 (423)
+.+++++||+|.+.........+..++..+ ....++|+.|-+.|..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 567899999998865333334444443322 234566666655565544
No 257
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.035 Score=52.91 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=23.0
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
+.+++.||+|+|||..... +...+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHhCCCCeEEEEEH
Confidence 3589999999999975432 3333332222226666654
No 258
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.36 E-value=0.014 Score=51.05 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=25.2
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
++|.||||+||+-. +=.++....-.+.+-.+++|+|....
T Consensus 90 ~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 78999999999942 22222222223333378999988754
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.35 E-value=0.033 Score=44.99 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
+++.|++|+|||......+..... . +..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~--~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-K--GGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-c--CCEEEEEECCcc
Confidence 578999999999865443333322 1 225666665433
No 260
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.34 E-value=0.011 Score=60.36 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhcc-CCCce
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTY-LPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~ 145 (423)
.+++-|++++.+. ...++|.|..|||||.+.+--+...+...+ .+.++|+++-|+..|..+.+++.++... ..++.
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~~~~~~ 81 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPVAEDIW 81 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccccCCcE
Confidence 5889999998753 467999999999999887666655553322 2237999999999999999999877542 12344
Q ss_pred EEEEEc
Q 014486 146 VAVFYG 151 (423)
Q Consensus 146 ~~~~~~ 151 (423)
+..+|+
T Consensus 82 i~TFHs 87 (726)
T TIGR01073 82 ISTFHS 87 (726)
T ss_pred EEcHHH
Confidence 555444
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=96.33 E-value=0.036 Score=50.62 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=25.3
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..+++|+||+|.+.. .....+.+..+..+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~--~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTS--GAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCH--HHHHHHHHHHhcccCCceEEEEe
Confidence 578999999999865 33455566666655555555443
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.32 E-value=0.057 Score=54.63 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.8
Q ss_pred eEEEccCCCcchhHHHH
Q 014486 86 VICQAKSGMGKTAVFVL 102 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~ 102 (423)
++|.|+||+|||.+.-.
T Consensus 784 LYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS 800 (1164)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999987543
No 263
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.09 Score=46.32 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh--HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR--ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (423)
+..+.+.+++|+|||..+...+.... .. +....++-+.+. ..+.||....... ++.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~-~~-~~~v~~i~~D~~ri~~~~ql~~~~~~~-----~~~~~------------- 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH-GK-KKTVGFITTDHSRIGTVQQLQDYVKTI-----GFEVI------------- 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEecCCCCHHHHHHHHHHhhhc-----CceEE-------------
Confidence 35689999999999986654333322 11 221334444222 4555554333221 22221
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc-cHHHH
Q 014486 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 239 (423)
Q Consensus 161 ~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~-~~~~~ 239 (423)
...++..+...+..- ....++++|++|-+=+...+......+..+.....+..-++.+|||... +....
T Consensus 135 ---------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred ---------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 112344443333211 0113568999999976532223344455555555555456779998754 55566
Q ss_pred HHHhc
Q 014486 240 CKKFM 244 (423)
Q Consensus 240 ~~~~~ 244 (423)
++.|.
T Consensus 205 ~~~f~ 209 (270)
T PRK06731 205 ITNFK 209 (270)
T ss_pred HHHhC
Confidence 66554
No 264
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.043 Score=55.11 Aligned_cols=129 Identities=10% Similarity=0.129 Sum_probs=65.6
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH--HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE--LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~--L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (423)
+-+.+.||||+|||.+....+.......+.....++-+.+-- -..| ++.+.... ++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQ----L~~~a~~~-gvp---------------- 244 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQ----LRIYGRIL-GVP---------------- 244 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHH----HHHHHHhC-CCC----------------
Confidence 347899999999998765433332222222212333333221 2233 33343322 222
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCcc-HHHHH
Q 014486 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVC 240 (423)
Q Consensus 162 ~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~-~~~~~ 240 (423)
-..+.+|+.+...+.. +.+.++|+||=+=+.-.+......+..+.....+...++.++||.... +...+
T Consensus 245 ------v~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 245 ------VHAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred ------ccccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 1223355555554442 235578888888765432233344444444444555678888887543 33344
Q ss_pred HHh
Q 014486 241 KKF 243 (423)
Q Consensus 241 ~~~ 243 (423)
+.|
T Consensus 315 ~~f 317 (767)
T PRK14723 315 HAY 317 (767)
T ss_pred HHH
Confidence 444
No 265
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.22 E-value=0.017 Score=46.84 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=33.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
...+++|+||+|.+.. .....+.+.++.-+....++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 5689999999999875 6677788888888888877777765443
No 266
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.22 E-value=0.016 Score=62.59 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=78.0
Q ss_pred CChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEE
Q 014486 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 148 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 148 (423)
+|+-|+++|. ..+++++|.|..|||||.+.+--++..+..+....++|+++=|+..+..+.+++.+..... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--~~--- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--LQ--- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH--Hh---
Confidence 5789999997 3588899999999999998777666655443322368999999999999988887754321 00
Q ss_pred EEcCcchHHHHHHHhcCCCcEEEechHHHHH-HHhcCCCCC-CCccEEEEcCcch
Q 014486 149 FYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSL-KNVRHFILDECDK 201 (423)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~-~~~~~~~~~-~~~~~vVvDE~h~ 201 (423)
.........+.+..- ...-|+|-+.+.. +++.....+ -+..+=|.||...
T Consensus 75 --~~p~~~~L~~q~~~~-~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 --QEPNSKHLRRQLALL-NTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --cCchhHHHHHHHhhc-cCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 000111122222222 3677999998865 444432221 1223445887764
No 267
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.078 Score=49.74 Aligned_cols=125 Identities=12% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
+.-+.+.||||+|||......+.......+.....++...+...+ ..+.+..++... ++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~~--------------- 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSVR--------------- 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCcee---------------
Confidence 445889999999999865433222211111122445555553221 122233333332 33322
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (423)
.+.++..+...+. .+.+.+.+++|.+-+.-........+..+.....+...++.+|||.....
T Consensus 253 -------~v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~ 315 (420)
T PRK14721 253 -------SIKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT 315 (420)
T ss_pred -------cCCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH
Confidence 2223333332222 24556789999864321111122333333332334456788999976543
No 268
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.18 E-value=0.026 Score=53.46 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=22.3
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
+.+++.||+|+|||.... ++...+.....+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEE
Confidence 357999999999997543 3333333222222566664
No 269
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.18 Score=44.18 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCC-----ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEE
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM-----DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-----~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (423)
..|.+..=-+...++|++.=+. |+ -+|++..|+ .+++.+|+|+||++.+- +.+. ... .+++-
T Consensus 130 VkWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVAT----EAn-STFFS 196 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVAT----EAN-STFFS 196 (439)
T ss_pred CchhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHh----hcC-CceEE
Confidence 4576665556666777765221 11 135566653 48999999999996432 2111 111 45777
Q ss_pred ecChHHHHHHHHHHHH
Q 014486 121 CHTRELAYQICHEFER 136 (423)
Q Consensus 121 ~P~~~L~~q~~~~~~~ 136 (423)
+.+..|+..|.-+-.+
T Consensus 197 vSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEK 212 (439)
T ss_pred eehHHHHHHHhccHHH
Confidence 8888887766544433
No 270
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.09 E-value=0.04 Score=52.06 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=34.4
Q ss_pred cEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhc
Q 014486 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 192 ~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
++||+|.+-+...+......+..+.....+..-++.++||...+....++.+.
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 78999999554332344555666666666666678888887766555555543
No 271
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.039 Score=47.82 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=21.4
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEE
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 120 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 120 (423)
..+++.|++|+|||..+.. +...+...+. .++++
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~g~--~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLRGK--SVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhcCC--eEEEE
Confidence 4689999999999976543 3333333222 44444
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.08 E-value=0.036 Score=48.99 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 568999999999998653
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.06 E-value=0.013 Score=53.35 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
++++++.||||+|||..+.. +...+...+ ..+++ .+...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~g--~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDRG--KSVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHCC--CeEEE-EEHHHHHHHH
Confidence 47799999999999975433 333333322 14444 4445554443
No 274
>PRK06921 hypothetical protein; Provisional
Probab=96.05 E-value=0.025 Score=49.95 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=26.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
+.++++.|++|+|||.... ++...+.... +..++++. ...+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEE-HHHHHHH
Confidence 5679999999999997543 3444443321 22555554 3344433
No 275
>PRK12377 putative replication protein; Provisional
Probab=96.02 E-value=0.032 Score=48.51 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=26.1
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (423)
.++++.||+|+|||..+.. +...+...+. .+ +.++..+|..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~g~--~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAKGR--SV-IVVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHcCC--Ce-EEEEHHHHHHHHH
Confidence 5799999999999975433 3333333222 33 4444456655543
No 276
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.043 Score=53.21 Aligned_cols=39 Identities=8% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++++|+||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~--~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG--HSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH--HHHHHHHHHHhccCCCeEEEEEE
Confidence 4678999999998865 33344555666666666666655
No 277
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.99 E-value=0.0095 Score=53.76 Aligned_cols=66 Identities=23% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 58 LRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
++.+.+.|. +.+.|...+..+.. +++++++|+||||||... -+++..........+++.+=...+|
T Consensus 120 l~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 120 LDDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 344555554 56777766655554 678999999999999743 4444444322222266666666665
No 278
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.97 E-value=0.053 Score=46.81 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.||+|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999654
No 279
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.071 Score=51.63 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||+|.+.. .....+.+.+..-++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~--~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCH--HHHHHHHHHHhhcCCceEEEEEE
Confidence 5678999999998864 34445566666666667666665
No 280
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.033 Score=56.61 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEE
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 228 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 228 (423)
..++++||||+|.+.. .....+.+.++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE
Confidence 4678999999998854 3445555566655555655555
No 281
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.94 E-value=0.0088 Score=54.13 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=42.1
Q ss_pred HHHHHHhCCCCCCChhhhhcccccc-cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 57 LLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 57 ~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.++.|.+.|+ +.+.|.+.+..+. .+++++++|+||||||.. +-+++..........+++++-.+.++
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3456665555 4577777776544 467899999999999954 44455443211222366777676665
No 282
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.93 E-value=0.12 Score=51.74 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhC-C-CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc
Q 014486 274 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (423)
Q Consensus 274 ~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~ 349 (423)
.|.+.+..++... .++.+||.++.+.....+.+.|+.. + ..+..+|+++++.+|.+.+....+|+.+|+|+|..+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 4556666665443 3568999999999999999999875 3 5788999999999999999999999999999997654
Q ss_pred cCCCCCCCCEEEEccCCCCcchhhhccc-c-------cCCCCCceEEEEEecCcccHHHH
Q 014486 350 RGIDIERVNIVINYDMPDSADTYLHRVG-R-------AGRFGTKGLAITFVSSASDSDIL 401 (423)
Q Consensus 350 ~Gld~~~~~~vi~~~~~~s~~~~~Q~~G-R-------~~R~g~~~~~~~~~~~~~~~~~~ 401 (423)
. .-+++...||..+.-. ..|.|--+ | ..|+...|..+++-+.....+.+
T Consensus 252 F-aP~~~LgLIIvdEEhd--~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 252 F-APVEDLGLVAIWDDGD--DLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred E-eccCCCCEEEEEcCCc--hhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 3 5566777777766432 23443322 1 12333456667676655554443
No 283
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.035 Score=54.53 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=25.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
.+.+++||||+|.+.. .....+.+.++.-+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~--~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLST--HSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhcCCCCcEEEEEE
Confidence 4578999999998864 33344555666555556555554
No 284
>PTZ00293 thymidine kinase; Provisional
Probab=95.92 E-value=0.039 Score=46.26 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=25.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
|.--++.||++||||.-.+-. +......+. +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~ag~--kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTYSEK--KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHHcCC--ceEEEEecc
Confidence 344688999999999654443 333332222 778888865
No 285
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.92 E-value=0.029 Score=53.02 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=77.6
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhc
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 164 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
.++.|+.|||||.+....++..+...+.+.+++++-|+.. +...+...+......+ ++....-....... -.+.+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~---i~~~~ 79 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSME---IKILN 79 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccE---EEecC
Confidence 6788999999999887777766555322348888888876 6666777777655443 22211111110000 00111
Q ss_pred -CCCcEEEech-HHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHH
Q 014486 165 -ECPQIVVGTP-GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242 (423)
Q Consensus 165 -~~~~ilv~T~-~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~ 242 (423)
+ ..|++..- +....+ .....+.++.+|||..+.. ..+...+.++ +. +.....+++|.||+.....+.+.
T Consensus 80 ~g-~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~-~~~~~l~~rl-r~-~~~~~~i~~t~NP~~~~~w~~~~ 150 (396)
T TIGR01547 80 TG-KKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTF-EDIKELIPRL-RE-TGGKKFIIFSSNPESPLHWVKKR 150 (396)
T ss_pred CC-eEEEeecccCChhHh-----hCcceeeeehhhhhhhcCH-HHHHHHHHHh-hc-cCCccEEEEEcCcCCCccHHHHH
Confidence 2 24554433 211111 1223368899999998754 2333333332 11 12223588999987654444444
Q ss_pred hc
Q 014486 243 FM 244 (423)
Q Consensus 243 ~~ 244 (423)
+.
T Consensus 151 f~ 152 (396)
T TIGR01547 151 FI 152 (396)
T ss_pred HH
Confidence 43
No 286
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.046 Score=50.87 Aligned_cols=39 Identities=8% Similarity=0.270 Sum_probs=24.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||+|.+.. .....+.+....-+....+++.|
T Consensus 118 ~~~kviIIDEa~~l~~--~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR--HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCH--HHHHHHHHHHhcCCCCeEEEEEc
Confidence 4568999999998854 22233444455545555556554
No 287
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.065 Score=52.68 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=26.9
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++||||+|.+.. .-...+.+.++.-+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~--~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT--AGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 5678999999998865 33444555666656666666665
No 288
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.045 Score=53.72 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
.+++++||||+|.+.. .....+.+.++.-+....+|+.|-.
T Consensus 123 gr~KViIIDEah~Ls~--~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCH--HHHHHHHHhhccCCCCceEEEEeCC
Confidence 4678999999998865 2233444455554556666666543
No 289
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.099 Score=48.03 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=58.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec-ChH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH-TRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (423)
++.+++.||+|+|||....-.+.. +...+ ...++|-+. .+. -+.||. .+.... ++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g-~~V~lItaDtyR~gAveQLk----~yae~l-gvpv~------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQN-RTVGFITTDTFRSGAVEQFQ----GYADKL-DVELI------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcC-CeEEEEeCCccCccHHHHHH----HHhhcC-CCCEE-------------
Confidence 456889999999999765443333 22222 213344443 332 233443 333222 22221
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 161 ~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
...+|+.+...+.... ...+.++|++|=+-+.-.+......+..+.....+..-++.+||+..
T Consensus 266 ---------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 ---------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred ---------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 1234554444332111 11346788888886543222334445555555544443556676544
No 290
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.061 Score=53.11 Aligned_cols=39 Identities=10% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++++||||+|.+.. .. ...+.+.++.-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~-~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTN-TA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCH-HH-HHHHHHhcccCCCCeEEEEEE
Confidence 4678999999998865 22 233444444444455555554
No 291
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.86 E-value=0.041 Score=46.37 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=26.6
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhccccccc-C---CceEEEccCCCcchhHHH
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-G---MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~---~~~ii~~~tGsGKT~~~~ 101 (423)
..+.+|++|.=.+.+...+.-. +..... + .+++++||+|+|||..+-
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~------------i~aa~~r~~~l~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKIL------------IRAAKKRGEALDHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHH------------HHHHHCTTS---EEEEESSTTSSHHHHHH
T ss_pred cCCCCHHHccCcHHHHhhhHHH------------HHHHHhcCCCcceEEEECCCccchhHHHH
Confidence 3455688887666666654411 111111 1 358999999999997543
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.83 E-value=0.087 Score=49.47 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=31.0
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHh
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (423)
.+++||+|=+-+.-.+......+..+.....+..-++.++||...+....++.|
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 356677777765433223444555555555555556777777765555555544
No 293
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.83 E-value=0.088 Score=50.81 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=78.3
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH-HhccCCCceEEEEEcCcchHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER-FSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
+-.+...|--.|||.. +.|++..+...-.+.++.|++..+-.++-+.+++.. ...++|.-.+....++
T Consensus 203 kaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~---------- 271 (668)
T PHA03372 203 KATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN---------- 271 (668)
T ss_pred cceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc----------
Confidence 4577778999999974 556666666555566999999998877776666643 2333333223222221
Q ss_pred hcCCCcEEEechHH-----HHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC-CCceEEEEecc
Q 014486 163 KNECPQIVVGTPGR-----ILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSAT 231 (423)
Q Consensus 163 ~~~~~~ilv~T~~~-----l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT 231 (423)
-|.+.-|+. +....+.+...-.++++++|||||-+ -...+..++..+. ++.++|++|.|
T Consensus 272 -----tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI-----~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 272 -----VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI-----KKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -----EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-----CHHHHHHhhhhhcccCceEEEEeCC
Confidence 233333321 12223344455678999999999944 3445556665554 46788999887
No 294
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.82 E-value=0.061 Score=50.81 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.+++|.||+|+|||...-
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997643
No 295
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.81 E-value=0.036 Score=54.13 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=78.5
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccC-CCceEEEEEcCcchHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (423)
..+-.++..|--.|||.... +++..+...-.+.++++.+|.+..++.+.+++......+ +.-.+....| ..+ .-
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SF 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EE
Confidence 34668899999999998655 444433322223389999999999999999998875532 2211222222 111 00
Q ss_pred HHhcCC-CcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHh-CCCCceEEEEeccC
Q 014486 161 LLKNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATL 232 (423)
Q Consensus 161 ~~~~~~-~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~ 232 (423)
.+.++. ..|.+++. .+.+...-..++++|+|||+-+.. ..+..++-. ...++++|++|.|-
T Consensus 328 ~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~-----~al~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 328 SFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP-----DAVQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred EecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH-----HHHHHHHHHHhccCccEEEEecCC
Confidence 112221 24444421 112234445789999999997754 222222222 22378899999884
No 296
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.81 E-value=0.045 Score=48.35 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCccEEEEcCcchhhccC-CcHHHHHHHHHhCCCC--ceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESL-DMRRDVQEIFKMTPHD--KQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~-~~~~~~~~~~~~~~~~--~~~v~~SAT 231 (423)
.+++++||||+|.++... .-.+.+...++.+.+. ..+|++ +|
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 456799999999987632 2344555666666554 345544 45
No 297
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.81 E-value=0.072 Score=48.17 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=72.7
Q ss_pred CCCChhhhhccccccc----C---CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH-h
Q 014486 67 EHPSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF-S 138 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~----~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~ 138 (423)
..++|+|..++..+.. + +..++.||.|.||+..+...+...+........ .|+. ++.+ .
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~----------c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT----------RQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH----------HHHHhc
Confidence 3577888888877664 2 348999999999998665433333332211100 1121 1111 2
Q ss_pred ccCCCceEEEEEcC-cchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCCCCccEEEEcCcchhhccCCcHHHHHHH
Q 014486 139 TYLPDIKVAVFYGG-VNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (423)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~ 215 (423)
..+|++.+.....+ .+.. .. ..|. -+.+..+.+.-. -.....+++|||+||.+.. .....+.+.
T Consensus 70 g~HPD~~~i~~~p~~~~~k-------~~-~~I~---idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--~AaNaLLKt 136 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGDK-------LR-TEIV---IEQVREISQKLALTPQYGIAQVVIVDPADAINR--AACNALLKT 136 (319)
T ss_pred CCCCCEEEEecCCCccccc-------cc-cccc---HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--HHHHHHHHH
Confidence 33455544321111 0000 00 0122 222222222111 1124678999999999864 556667777
Q ss_pred HHhCCCCceEEEEeccC
Q 014486 216 FKMTPHDKQVMMFSATL 232 (423)
Q Consensus 216 ~~~~~~~~~~v~~SAT~ 232 (423)
++.-+....++++|..+
T Consensus 137 LEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 137 LEEPSPGRYLWLISAQP 153 (319)
T ss_pred hhCCCCCCeEEEEECCh
Confidence 77766677677776543
No 298
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.81 E-value=0.049 Score=53.31 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=28.1
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccH
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (423)
++++|+|||+|.+.........+..++..+ ....++|+.|-..|..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 467899999998865333334444444433 33566776555555544
No 299
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.79 E-value=0.087 Score=51.77 Aligned_cols=137 Identities=10% Similarity=0.115 Sum_probs=74.8
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhcc------CCCc-eEEEEEcCcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY------LPDI-KVAVFYGGVN 154 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~-~~~~~~~~~~ 154 (423)
..+-.++.+|-|.|||.+..+.+...+... +.+++|.+|...-+.++.++++..... ++.. .+....|+..
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E 263 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDE 263 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCee
Confidence 345688999999999987655444333212 248999999999999988888877652 2221 1222223211
Q ss_pred -hHHHHHHHhc-CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCC-CCceEEEEecc
Q 014486 155 -IKIHKDLLKN-ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSAT 231 (423)
Q Consensus 155 -~~~~~~~~~~-~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~-~~~~~v~~SAT 231 (423)
.......-.. +...+.+++.. .+...-..++++|+|||+-+.. ..+..++-.+. ...+++++|.+
T Consensus 264 ~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~-----~~l~aIlP~l~~~~~k~IiISS~ 331 (752)
T PHA03333 264 NLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP-----GALLSVLPLMAVKGTKQIHISSP 331 (752)
T ss_pred EEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-----HHHHHHHHHHccCCCceEEEeCC
Confidence 0000000000 11133332221 1112224568999999997643 33334444333 35667777766
Q ss_pred C
Q 014486 232 L 232 (423)
Q Consensus 232 ~ 232 (423)
-
T Consensus 332 ~ 332 (752)
T PHA03333 332 V 332 (752)
T ss_pred C
Confidence 5
No 300
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.78 E-value=0.068 Score=48.77 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=26.0
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++||+||+|.+.. ......+..+....+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~-~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-ADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccC-HHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998833 234455666677666666666544
No 301
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.76 E-value=0.041 Score=54.77 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHHhCCCCCCChhhhhcccccccCC--ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 58 LRAIVDSGFEHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
...+.....+.+..-|.+.+..++..+ -+++.|.-|-|||.+.-+++........ ...++|..|+.+-++...+.+.
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHH
Confidence 345666545555555556666666643 4899999999999877655533332222 3488999999999888887776
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHH
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEI 215 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~ 215 (423)
+-.... +.+-.+...... ...........|=+.+|.... ..-+++|||||=-+ -.+.+.++
T Consensus 283 ~~l~~l-g~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI-----plplL~~l 343 (758)
T COG1444 283 KGLEFL-GYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI-----PLPLLHKL 343 (758)
T ss_pred HhHHHh-CCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC-----ChHHHHHH
Confidence 544333 222111111100 000000111234455554332 11468999999744 34455555
Q ss_pred HHhCCCCceEEEEeccCC
Q 014486 216 FKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 216 ~~~~~~~~~~v~~SAT~~ 233 (423)
....+ .+++|.|+-
T Consensus 344 ~~~~~----rv~~sTTIh 357 (758)
T COG1444 344 LRRFP----RVLFSTTIH 357 (758)
T ss_pred HhhcC----ceEEEeeec
Confidence 55443 678888863
No 302
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.76 E-value=0.039 Score=62.04 Aligned_cols=62 Identities=27% Similarity=0.271 Sum_probs=43.7
Q ss_pred CCCChhhhhcccccccCC--ceEEEccCCCcchhHHH---HHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 67 EHPSEVQHECIPQAILGM--DVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
..+++.|+.++..++.+. -++|.|+.|+|||...- -++....... +.+++.++||..-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 378999999999988764 47889999999997641 2222322222 23788899997665554
No 303
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.73 E-value=0.012 Score=50.85 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhccCC----CceEEEEEcCcchH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLP----DIKVAVFYGGVNIK 156 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 156 (423)
.|..+++.|++|+|||...+-.+.+.+.. +. ++++++-. +-..++.+.++.+..... .-....+.......
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 35669999999999998766555555554 33 67777743 334555555554421110 00111111111000
Q ss_pred HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc---cCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 157 IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE---SLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 157 ~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~---~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
.. . -..++.+...+...... .+.+.+|+|-...+.. ...++..+..+...+.....++++++.
T Consensus 94 ~~---------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 GW---------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp T----------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cc---------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00 0 11222333322211000 1227899999988821 133455566666666555556666666
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.051 Score=49.76 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=29.5
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
...++||+|||+.+.. +....+.+....-+....+++.+-
T Consensus 108 ~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 6788999999998875 556666777777666676666554
No 305
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.72 E-value=0.096 Score=46.59 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=32.6
Q ss_pred ccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 77 i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
+--+..|.-+++.|++|+|||...+..+...+...+ .++++++-- .-..++..++
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E-~~~~~~~~r~ 78 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLE-EPVVRTARRL 78 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcc-cCHHHHHHHH
Confidence 334555677999999999999765554444433212 267777632 2233444444
No 306
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.092 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.1
Q ss_pred CceEEEccCCCcchhHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
+..++.||.|+|||.++...+-
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999987755433
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.095 Score=51.80 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=26.9
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
+...++|||||+|.+.. .....+.+.++.-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~--~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 45678999999998864 23344555556656666666665
No 308
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.085 Score=48.98 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=33.4
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCC-CceEEEEeccCCccHH
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQVMMFSATLSKEIR 237 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~-~~~~v~~SAT~~~~~~ 237 (423)
+++++++|.++.+..+......+-.++..+.. ..|+++.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 56789999999887654556666555555543 4578888877776654
No 309
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.092 Score=51.72 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
+.+|+++.-.+.+.+.|... +..-.-++..+++||.|+|||.++-+.+-
T Consensus 12 P~~f~~viGq~~v~~~L~~~------------i~~~~~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNA------------IKQGKISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred CCcHHhccCcHHHHHHHHHH------------HHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44566666666666555432 00001124478899999999987655433
No 310
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.06 Score=52.13 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.5
Q ss_pred ceEEEccCCCcchhHHHHH
Q 014486 85 DVICQAKSGMGKTAVFVLS 103 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~ 103 (423)
..++.||.|+|||.++...
T Consensus 38 a~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3699999999999876543
No 311
>PRK09183 transposase/IS protein; Provisional
Probab=95.64 E-value=0.071 Score=46.91 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=18.9
Q ss_pred cccCCceEEEccCCCcchhHHHHH
Q 014486 80 AILGMDVICQAKSGMGKTAVFVLS 103 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~~ 103 (423)
+..+.++++.||+|+|||..+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 445778999999999999765443
No 312
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.60 E-value=0.041 Score=45.93 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=25.2
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
....++||+||+|.+.. .....+...++..++..-+|+++
T Consensus 94 ~~~~kviiide~~~l~~--~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE--AAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEE
Confidence 35678999999998864 23344555555545455455544
No 313
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.60 E-value=0.019 Score=51.58 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 50 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 50 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.++..+.-++.|.+.|. +.+.|...+..+.. +++++++|+||||||... -+++..+.......+++++=...++
T Consensus 100 k~~~~~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 100 KKAVAVFTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CcCCCCCCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 33333333455555554 44556555555444 678999999999999753 3444444332222266777666665
No 314
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.069 Score=51.25 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=15.6
Q ss_pred ceEEEccCCCcchhHHHHH
Q 014486 85 DVICQAKSGMGKTAVFVLS 103 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~ 103 (423)
..++.||+|+|||..+-+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999876543
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.17 Score=47.24 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=31.5
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCC---CCceEEEEeccCCc-cHHHHHHHh
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP---HDKQVMMFSATLSK-EIRPVCKKF 243 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~---~~~~~v~~SAT~~~-~~~~~~~~~ 243 (423)
.+.++|++|=+-+...+......+..+..... +...++.+|||... .+......+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45678999976654322233444555555442 23457888999876 444444443
No 316
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.58 E-value=0.11 Score=40.25 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=13.0
Q ss_pred eEEEccCCCcchhHH
Q 014486 86 VICQAKSGMGKTAVF 100 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~ 100 (423)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999754
No 317
>CHL00181 cbbX CbbX; Provisional
Probab=95.51 E-value=0.11 Score=46.58 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.4
Q ss_pred CCceEEEccCCCcchhHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~ 102 (423)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999987643
No 318
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.064 Score=52.73 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.1
Q ss_pred CceEEEccCCCcchhHHHHHHhhc
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
+..|+.||.|+|||.++.+.+-..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999998876544333
No 319
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.096 Score=51.97 Aligned_cols=39 Identities=8% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++++||||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 118 g~~KV~IIDEah~Ls~--~a~NALLKtLEEPp~~v~FIL~T 156 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLAT 156 (647)
T ss_pred CCCEEEEEechHhCCH--HHHHHHHHHHHcCCCCeEEEEec
Confidence 4678999999998865 33444555566555555555553
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.23 Score=44.03 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCC------CCceEEEEeccCCccHHHHHHHhc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP------HDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~------~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
.++++|++|=+-+...+......+..+..... +...++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 45678999988766433344445666655544 455678899987665444444443
No 321
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.45 E-value=0.16 Score=50.89 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=37.5
Q ss_pred ccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 191 ~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
.-++|+|+.|.+.+ ......+..+.+..|.+...++.|-+-|+
T Consensus 130 pl~LVlDDyHli~~-~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISD-PALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCc-ccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 35899999999988 67788899999999999999999988653
No 322
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.40 E-value=0.12 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=17.5
Q ss_pred CCceEEEccCCCcchhHHHHHHh
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
++-+.+.||||+|||.+....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 44588999999999987655443
No 323
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.40 E-value=0.07 Score=51.15 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=52.3
Q ss_pred CCHH-HHHHHHhCCCCCC-------ChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC---CCeEEEEEe
Q 014486 53 LKPE-LLRAIVDSGFEHP-------SEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLC 121 (423)
Q Consensus 53 l~~~-~~~~l~~~~~~~~-------~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 121 (423)
..++ ++..|.+.--.++ .+-|-++|.. -.++-++|+|..|||||.+++--+...+.... ....+||+.
T Consensus 189 ~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 189 GRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEc
Confidence 3344 4566666533333 3445555421 23556899999999999887654443332211 111499999
Q ss_pred cChHHHHHHHHHHHHHh
Q 014486 122 HTRELAYQICHEFERFS 138 (423)
Q Consensus 122 P~~~L~~q~~~~~~~~~ 138 (423)
|.+.+..-+.+.+-+++
T Consensus 268 PN~vFleYis~VLPeLG 284 (747)
T COG3973 268 PNRVFLEYISRVLPELG 284 (747)
T ss_pred CcHHHHHHHHHhchhhc
Confidence 99998888777666553
No 324
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.39 E-value=0.12 Score=50.59 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||+|.+.. .....+.+.+..-+....+|++|
T Consensus 118 ~~~KVIIIDEad~Lt~--~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLST--SAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCH--HHHHHHHHHHHhCCCcEEEEEEC
Confidence 3568899999998854 23344555555544455455544
No 325
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.39 E-value=0.16 Score=47.60 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=54.0
Q ss_pred HHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 57 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 57 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
+++.+++. +..+-..|.++.-..-.|+. .|.|=.|||||....+-+.+.-. .+...++++.+=|+.|+.++.....+
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~-knPd~~I~~Tfftk~L~s~~r~lv~~ 228 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHS-KNPDSRIAFTFFTKILASTMRTLVPE 228 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhc-CCCCceEEEEeehHHHHHHHHHHHHH
Confidence 44444443 33455778888666666666 77888999999865544433333 33334899999999999998888877
Q ss_pred Hh
Q 014486 137 FS 138 (423)
Q Consensus 137 ~~ 138 (423)
|+
T Consensus 229 F~ 230 (660)
T COG3972 229 FF 230 (660)
T ss_pred HH
Confidence 64
No 326
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.19 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.9
Q ss_pred cCCceEEEccCCCcchhHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~ 102 (423)
.++.+.+.||+|+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999987544
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.13 Score=51.12 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=25.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
.+.+++||||+|.+.. .....+.+.+..-+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998754 22334555555555566666655
No 328
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.089 Score=48.01 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.+.|++||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 469999999999997653
No 329
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.34 E-value=0.27 Score=42.46 Aligned_cols=52 Identities=6% Similarity=0.047 Sum_probs=31.3
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.+.-+++.|++|+|||...+..+...+..+ .++++++.. +-..+..+.+.++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCC-CCHHHHHHHHHHh
Confidence 356699999999999987544444433332 267888743 3334444444443
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.28 E-value=0.089 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.7
Q ss_pred CCceEEEccCCCcchhHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLST 104 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~ 104 (423)
++.+++.||||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3458899999999998754433
No 331
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.032 Score=49.87 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCC-ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 48 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.+.|+-.+-.+..|.+ |..+++-|...+..+.... +++++|.||||||.. +-++........ +++.+=.+.+|
T Consensus 139 IRKf~k~~ltl~dli~--~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaEL 212 (355)
T COG4962 139 IRKFPKIKLTLLDLII--FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAEL 212 (355)
T ss_pred ccccccccccHHHHHH--cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhh
Confidence 3444444444444443 5678899999888888765 899999999999974 223333333333 77888787766
No 332
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.24 E-value=0.021 Score=53.80 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=28.4
Q ss_pred ChhhhhcccccccCCc--eEEEccCCCcchhHHHHHHhhccCCCC
Q 014486 70 SEVQHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNP 112 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~--~ii~~~tGsGKT~~~~~~~~~~~~~~~ 112 (423)
.+.|...+..++.... +++.||||||||.+ +..++..+....
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 4555666656565433 78999999999976 455666655444
No 333
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.19 E-value=0.029 Score=57.97 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=73.9
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc-EEEEcCccccCCCCCCCCEEEEccC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR-ILVATDLVGRGIDIERVNIVINYDM 365 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-ili~T~~~~~Gld~~~~~~vi~~~~ 365 (423)
...++|+|+......+.+...+...++....-.++ ++-...+..|.+ ++ +++-++..+-|+|+-.+.||+..+|
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 34689999998888888877777665554333322 223334455554 44 5567889999999999999999999
Q ss_pred CCCcchhhhcccccCCCCCceEEE
Q 014486 366 PDSADTYLHRVGRAGRFGTKGLAI 389 (423)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~~~~~ 389 (423)
.-++..-.|++||++|.||+....
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~ 1318 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTF 1318 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchh
Confidence 999999999999999999976544
No 334
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.069 Score=49.17 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...++|||||+|.+.. .....+.+.++.-+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~--~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--NAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhcCCCCceEEEEECC
Confidence 5678999999998864 4445566666665556666666544
No 335
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.093 Score=48.62 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (423)
...+++||||+|.+.. .....+.+.++.-+....++++|..+
T Consensus 140 ~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 5678999999998854 44455666666655566566665554
No 336
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.15 Score=46.37 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...+++|+|++|.+.. .....+.+.++..+....+|++|-.
T Consensus 112 ~~~kV~iiEp~~~Ld~--~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 112 GGLRVILIHPAESMNL--QAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred CCceEEEEechhhCCH--HHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 5678999999998864 5566666777766655555555443
No 337
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.12 Score=46.82 Aligned_cols=41 Identities=2% Similarity=0.106 Sum_probs=29.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...+++|+|+||.+.. .....+.+.++.=+....++++|..
T Consensus 106 g~~KV~iI~~a~~m~~--~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTE--AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4678999999999864 5556666777775666656665544
No 338
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.14 Score=46.80 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...+++|||+||.+.. .-...+.+.++.-++...++++|..
T Consensus 131 ~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 131 GGARVVVLYPAEALNV--AAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHhcCCCcCcEEEEEECC
Confidence 5678999999999864 4555566666665556656666544
No 339
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.15 E-value=0.26 Score=44.93 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=25.1
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..++|++||+|.+.. .....+..+....+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~--~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTS--DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCH--HHHHHHHHHHhcCCCCCeEEEEe
Confidence 457899999998854 23445566666656666666654
No 340
>PRK10867 signal recognition particle protein; Provisional
Probab=95.14 E-value=0.26 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=16.1
Q ss_pred ceEEEccCCCcchhHHHHHHh
Q 014486 85 DVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~ 105 (423)
-++++|++|+|||.+..-.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378999999999987654343
No 341
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.077 Score=52.49 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++||||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~--~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLST--NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCH--HHHHHHHHHHHcCCCCeEEEEEe
Confidence 5678999999998864 33445555666555566566555
No 342
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.15 Score=47.68 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=25.8
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...+++||||+|.+.. .....+.+.++.-+....+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~--~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTE--RAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCH--HHHHHHHHHhhcCCCCCeEEEEECC
Confidence 4678999999999964 3334455555554545544554444
No 343
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.12 E-value=0.14 Score=51.93 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=63.9
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-cccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~~~Gld~~~~~~vi 361 (423)
.+.++++.+++...|.+.++.+++ .++++..++|+++..+|...+....+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999888777654 4688999999999999999999999999999999964 55567788888877
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 344
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.05 E-value=0.1 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.0
Q ss_pred CceEEEccCCCcchhHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLST 104 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~ 104 (423)
+..++.||.|+|||.++-+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998765533
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.05 E-value=0.14 Score=44.56 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=26.3
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
..|.-++|.|++|+|||...+-.+.......+ ..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEe
Confidence 44666899999999999765544444444322 2677777
No 346
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.01 E-value=0.14 Score=51.75 Aligned_cols=76 Identities=17% Similarity=0.342 Sum_probs=63.5
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEcc
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 364 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~ 364 (423)
+.++||.++++..+.++.+.|++. +..+..+||+++..+|...+.....|+.+|+|+|..+.. +.+.++.++|.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 568999999999999999999764 788999999999999999988889999999999974332 4566777777554
No 347
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.00 E-value=0.19 Score=47.68 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.0
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997653
No 348
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.94 E-value=0.16 Score=49.61 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
.+.+++|+||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~--~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCH--HHHHHHHHHHhCCCCCEEEEEEe
Confidence 5678999999998864 22334555555555566666665
No 349
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.91 E-value=0.18 Score=46.77 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=31.9
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|.-+++.|++|+|||...+..+...... + .+++|+.-. +-..|+..++.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~-g--~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR-G--GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc-C--CeEEEEECC-cCHHHHHHHHHHc
Confidence 3458999999999998655444333322 1 277887654 3445665555554
No 350
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.91 E-value=0.23 Score=48.29 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=62.5
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEcc
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 364 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~ 364 (423)
++++|+.++++..+.++.+.|++. +..+..+||+++..+|........+|+.+|+|+|..+-. ..+.++..||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 568999999999999999999864 678889999999999999988888999999999965332 3456777777543
No 351
>PRK04195 replication factor C large subunit; Provisional
Probab=94.90 E-value=0.13 Score=49.91 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=29.0
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
.+.+++++...+...+.|...- ..++ .-...+.+++.||+|+|||..+-
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l----~~~~-----~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWI----ESWL-----KGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHH----HHHh-----cCCCCCeEEEECCCCCCHHHHHH
Confidence 3455667766666666555420 0000 00014569999999999997653
No 352
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.11 Score=50.55 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
.+.+++|+||+|.+.. .....+.+.++.-+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~--~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK--QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4678999999998864 34445556666655566666655
No 353
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.85 E-value=0.28 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=16.8
Q ss_pred ceEEEccCCCcchhHHHHHHhh
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQ 106 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~ 106 (423)
-++++|++|+|||.+..-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999876544433
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.84 E-value=0.37 Score=41.58 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.|..+++.|++|+|||..+...+.+.+..+. .+++++. .....++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~---~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD---PVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEEc-cCCHHHHHHHHHHh
Confidence 3567999999999999765544444333222 5666663 33344554444443
No 355
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.82 E-value=0.18 Score=48.01 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.2
Q ss_pred cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
+..|.-++|.|++|+|||...+-.+.......+. .+++++
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~--~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGK--PVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC--cEEEEE
Confidence 3345568999999999997665544344322222 566665
No 356
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.81 E-value=0.21 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.6
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.++|++||+|+|||..+
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CceEEecCCCCchHHHH
Confidence 45999999999999754
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.71 E-value=0.44 Score=41.31 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
+.-+++.|++|+|||......+...+..+ .+++++.-.. -..++.+.+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCC-CHHHHHHHHHHC
Confidence 45589999999999986655555444432 2777777543 334555555554
No 358
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.71 E-value=0.064 Score=50.38 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=23.2
Q ss_pred hhhhcccccccCCceEEEccCCCcchhHHH
Q 014486 72 VQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 72 ~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
.....+..+..++++++.||+|+|||..+-
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 344455566678999999999999997654
No 359
>PHA00729 NTP-binding motif containing protein
Probab=94.70 E-value=0.23 Score=42.24 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=36.5
Q ss_pred cEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcH----HHHHHHHHhCCCCceEEEEeccCCccHHHHHHHh
Q 014486 168 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR----RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (423)
Q Consensus 168 ~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~----~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (423)
..++.+.+.+...+..........+++|+||+-.-.....+. ..+..+...+.....++.+...-+.++...++..
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 555566666655443221122345789999943222211122 1222233333334445666655555555555553
Q ss_pred c
Q 014486 244 M 244 (423)
Q Consensus 244 ~ 244 (423)
.
T Consensus 140 g 140 (226)
T PHA00729 140 G 140 (226)
T ss_pred C
Confidence 3
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.70 E-value=0.57 Score=42.56 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=33.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhC------CCCceEEEEeccCCccHHHHHHHhc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMT------PHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~------~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
.++++||+|=+-+..........+..+.+.+ .+...++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4568899999987654333444555555432 2344578899997665444444443
No 361
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.17 Score=50.23 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=25.0
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
+.+.++|||||+|.+.. .-...+.+.++.-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~--~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST--AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 35678999999998864 22334455555544455555555
No 362
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.64 E-value=0.49 Score=38.73 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHH
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 242 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~ 242 (423)
.+.++||+|.......+......+..+........-++.++++.+.........
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~ 134 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKA 134 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHH
Confidence 355689999988652212233334444333334444566666654444444333
No 363
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.57 E-value=0.22 Score=45.01 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccC
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 232 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~ 232 (423)
....+++|||+||.+.. .....+.+.++.=+....++++|..+
T Consensus 106 ~~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE--SASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCH--HHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 35678999999999864 45566667777766666666665553
No 364
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.54 E-value=0.25 Score=50.09 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.1
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 365
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.50 E-value=0.6 Score=37.45 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=38.7
Q ss_pred CCCccEEEEcCcchhhcc-CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHH
Q 014486 188 LKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 240 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~ 240 (423)
...+++||+||+=..... .--...+..+++..+...-+|+.+-.+|+++...+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 356789999999877541 23355677777877777778888888888776553
No 366
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.24 Score=45.31 Aligned_cols=135 Identities=12% Similarity=0.109 Sum_probs=67.9
Q ss_pred CChhhhhccccccc----C---CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH-hcc
Q 014486 69 PSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF-STY 140 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~----~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~ 140 (423)
++|+|...+..+.+ + +-.++.||.|.||+..+...+...+...+.....-=.|++ ++.+ ...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~s----------C~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRG----------CQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH----------HHHHHcCC
Confidence 56788777776653 2 3478999999999987654333333322111010001222 2222 123
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc--CCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHh
Q 014486 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 218 (423)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~ 218 (423)
+|++....-.++.. .| +-+.+..+.+. ..-.....+++|+|+||.|.. .....+.+.++.
T Consensus 73 HPD~~~i~p~~~~~-------------~I---~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~--~AaNaLLKtLEE 134 (334)
T PRK07993 73 HPDYYTLTPEKGKS-------------SL---GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD--AAANALLKTLEE 134 (334)
T ss_pred CCCEEEEecccccc-------------cC---CHHHHHHHHHHHhhccccCCceEEEEcchHhhCH--HHHHHHHHHhcC
Confidence 35544332111100 11 11222222211 011235678999999999864 455666666666
Q ss_pred CCCCceEEEEecc
Q 014486 219 TPHDKQVMMFSAT 231 (423)
Q Consensus 219 ~~~~~~~v~~SAT 231 (423)
=+...-++++|..
T Consensus 135 Pp~~t~fiL~t~~ 147 (334)
T PRK07993 135 PPENTWFFLACRE 147 (334)
T ss_pred CCCCeEEEEEECC
Confidence 5555655655544
No 367
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.46 E-value=0.12 Score=51.88 Aligned_cols=91 Identities=16% Similarity=0.286 Sum_probs=71.5
Q ss_pred eChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC
Q 014486 270 LSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (423)
Q Consensus 270 ~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~ 346 (423)
+....|-+....++... .++.+||.++.+.....+.+.|+.+ |.++..+|+++++.+|.....+...|+.+|+|+|.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 44555666666666543 4568999999999999999998865 88999999999999999999999999999999996
Q ss_pred ccccCCCCCCCCEEE
Q 014486 347 LVGRGIDIERVNIVI 361 (423)
Q Consensus 347 ~~~~Gld~~~~~~vi 361 (423)
.+-. .-++++..+|
T Consensus 305 SAlF-~Pf~~LGLII 318 (730)
T COG1198 305 SALF-LPFKNLGLII 318 (730)
T ss_pred hhhc-CchhhccEEE
Confidence 5332 3344556555
No 368
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.46 E-value=1.9 Score=35.57 Aligned_cols=34 Identities=3% Similarity=-0.026 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCceEEEEeccCCccHHHHHHHh
Q 014486 210 RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243 (423)
Q Consensus 210 ~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 243 (423)
..+.+-.+..++..+++++|+.-...+..+++..
T Consensus 163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 3455556677888899999998877776665443
No 369
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.45 E-value=0.034 Score=45.81 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=26.3
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
-.++++++.||+|+|||..+...+.+... .+ ..+++ ++..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g--~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-KG--YSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CC--cceeE-eecCceeccc
Confidence 35678999999999999876543333333 22 14444 4445565543
No 370
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.43 E-value=0.23 Score=41.58 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=25.1
Q ss_pred CccEEEEcCcchhhccCCcH----HHHHHHHHhCCCC-ceEEEEeccCCccHHHHHH
Q 014486 190 NVRHFILDECDKMLESLDMR----RDVQEIFKMTPHD-KQVMMFSATLSKEIRPVCK 241 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~----~~~~~~~~~~~~~-~~~v~~SAT~~~~~~~~~~ 241 (423)
.-.++|+||||......... ......+...++. .-++++|-.+ ..+...++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHH
Confidence 44689999999987644442 2333555555553 3456665544 33444443
No 371
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.086 Score=46.21 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCC
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPG 113 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~ 113 (423)
++|.||||||||.+ +.+++..+.....
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 89999999999976 4566666655443
No 372
>PF05729 NACHT: NACHT domain
Probab=94.37 E-value=0.85 Score=36.73 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=13.7
Q ss_pred eEEEccCCCcchhHHH
Q 014486 86 VICQAKSGMGKTAVFV 101 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~ 101 (423)
++|.|++|+|||...-
T Consensus 3 l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEECCCCCChHHHHH
Confidence 6899999999997653
No 373
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.26 Score=49.11 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.4
Q ss_pred CceEEEccCCCcchhHHHHHHhh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQ 106 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~ 106 (423)
+..++.||.|+|||..+...+-.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 45799999999999876543333
No 374
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.13 Score=46.97 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCC--ChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHP--SEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~--~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.|+...|+|.+.+.+......+- ..+|. --+|++..||+|+|||+.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~a-------pfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQA-------PFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccc-------hhhheeeeCCCCCCchHHH
Confidence 46677777777776664422110 11110 1257999999999999754
No 375
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.28 E-value=0.67 Score=41.07 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=21.4
Q ss_pred CChhhhhcccccc----cCC-ceEEEccCCCcchhHHH
Q 014486 69 PSEVQHECIPQAI----LGM-DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 69 ~~~~Q~~~i~~~~----~~~-~~ii~~~tGsGKT~~~~ 101 (423)
+++.+..++..+. .+. .+++.||+|+|||...-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4445555554443 223 48899999999997643
No 376
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.23 E-value=0.082 Score=45.96 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=34.6
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|..++|.||+|+|||..++-.+.+.+..+. ++++++- .+-..++.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHh
Confidence 566999999999999876655555553322 6788874 34556666666654
No 377
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.23 E-value=0.05 Score=49.78 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=27.5
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.+++++++||||||||.. +-+++..+.... +++.+=++.+|
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~---rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIPPQE---RLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccCCCC---CEEEECCCccc
Confidence 478899999999999964 344444443322 55666666655
No 378
>PRK05973 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.13 Score=44.23 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=40.6
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.++|.. +..--+..|.-++|.|++|+|||...+..+.+.+..+. +++|++-- +-..|+.+++..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEEEEe-CCHHHHHHHHHHc
Confidence 455632 34445556677999999999999876665555544322 66777532 3345666666555
No 379
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.13 E-value=0.17 Score=50.92 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=63.1
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-cccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~~~Gld~~~~~~vi 361 (423)
.+.++++.+++...|.+.++.+++ .|+++..++|+++..+|...++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 356899999999999988777664 3788999999999999999999999999999999964 44567777788776
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 380
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.10 E-value=0.1 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=18.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
+..++++||||||||... ..++..+.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 446899999999999753 44555443
No 381
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.04 E-value=0.22 Score=50.82 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCC-----CCeEE-EcCCCCHHHHHHHHHhhhcCCccEEEEcCc
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-----FPSIC-IHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~ili~T~~ 347 (423)
..+..+.-...++++++.+|+...+.++++.|.... ..+.. ||+.++..+++.++++|.+|..+|||+|+.
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 344444445556899999999999999988887652 33333 999999999999999999999999998864
No 382
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.97 E-value=0.18 Score=48.13 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=83.8
Q ss_pred CCChhhhhccccccc------C----CceEEEccCCCcchhHHH-HHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL------G----MDVICQAKSGMGKTAVFV-LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~------~----~~~ii~~~tGsGKT~~~~-~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
.+-|+|+-++-.++- + +.++|..|-+-|||..+. +.....+.....+....|++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 567899988877772 1 348999999999996543 22222222234444889999999999999988888
Q ss_pred HhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc--CCCCCCCccEEEEcCcchhhccCCcHHHHHH
Q 014486 137 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQE 214 (423)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~ 214 (423)
+....+++....- .......|...-.......+.. ...+-.+..+.|+||.|.... ....+..
T Consensus 141 mv~~~~~l~~~~~------------~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~---~~~~~~~ 205 (546)
T COG4626 141 MVKRDDDLRDLCN------------VQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGK---QEDMYSE 205 (546)
T ss_pred HHHhCcchhhhhc------------cccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcC---HHHHHHH
Confidence 7765432211100 0000001111111112222222 223345677899999998754 1134444
Q ss_pred HHHh--CCCCceEEEEec
Q 014486 215 IFKM--TPHDKQVMMFSA 230 (423)
Q Consensus 215 ~~~~--~~~~~~~v~~SA 230 (423)
+..- ..++.+++..|.
T Consensus 206 ~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 206 AKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHhhhccCcCceEEEEec
Confidence 4332 244667777775
No 383
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.43 Score=46.50 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=39.6
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.+....+|++.+=-+.+...|++. ...+|-.+.+-.+ -.-+.+++.||+|+|||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 555667899998667776666643 4455555555553 23467999999999999864
No 384
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.93 E-value=1.1 Score=40.31 Aligned_cols=56 Identities=13% Similarity=0.335 Sum_probs=41.5
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc------eEEEEeccCCccHHHHHHHhc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK------QVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~------~~v~~SAT~~~~~~~~~~~~~ 244 (423)
.++++|++|=|-++-+..+.-..+.++.+...+.. -++.+=||...+....++.|.
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 45678999999999877778888888888776654 344558998877666655554
No 385
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.93 E-value=1.1 Score=41.55 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
.+.+.+.|+.|.|||.. +-+.....+.+.+.+ ++.-+...++.+.+.++. ++.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~------------~~~--------- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR------------GQD--------- 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcccccc----ccccHHHHHHHHHHHHHh------------CCC---------
Confidence 46799999999999974 333333332222112 244466666666666553 100
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 236 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~ 236 (423)
+-+ ..+.+.+ .....++.+||.|.-. ..-...+.+++..+ ....-+|..|-++|.++
T Consensus 115 -----~~l----~~va~~l------~~~~~lLcfDEF~V~D--iaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 -----DPL----PQVADEL------AKESRLLCFDEFQVTD--IADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -----ccH----HHHHHHH------HhcCCEEEEeeeeccc--hhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 100 0111111 1244589999999542 23344444444433 44666777777777654
No 386
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.92 E-value=0.17 Score=44.71 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=27.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.|.=+++.|.+|.|||..++-.+...+...+ ..+++++.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~Sl 56 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSL 56 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEES
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcC
Confidence 3445899999999999876665555555432 27788874
No 387
>PRK06904 replicative DNA helicase; Validated
Probab=93.90 E-value=0.42 Score=46.03 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=55.9
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcC--cchHHHH-
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG--VNIKIHK- 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 159 (423)
|.=++|.|.||.|||..++-.+...+...+ . .+++++. -.-..|+..++-.... ++....+..| .+..++.
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g-~-~Vl~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASE-K-PVLVFSL-EMPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQDWAK 294 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcC-C-eEEEEec-cCCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHHHHH
Confidence 444889999999999755433333332222 1 4566543 3445555555443322 2222222222 2222221
Q ss_pred -----HHHhcCCCcEEE-----echHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 160 -----DLLKNECPQIVV-----GTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 160 -----~~~~~~~~~ilv-----~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
..+... +.+.| .|+..+....+........+++||||-.+.+..
T Consensus 295 ~~~a~~~l~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 295 ISSTVGMFKQK-PNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 112122 34555 244555443322111123578999999998753
No 388
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.87 E-value=0.31 Score=47.95 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.7
Q ss_pred CceEEEccCCCcchhHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~ 102 (423)
+..++.||.|+|||.++..
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999987654
No 389
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.15 Score=45.16 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=46.6
Q ss_pred CcCCCCCHHHHHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhcc--CCCCCCeEE-EEEe--
Q 014486 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQT--EPNPGQVTA-LVLC-- 121 (423)
Q Consensus 48 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~--~~~~~~~~~-lil~-- 121 (423)
|+.+.+...+.+.|...-...+.-.+...=..+.. ++-+++.||+|+|||... -++.+.+ +.....+++ +|=.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLC-KaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLC-KALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHH-HHHHHhheeeecCccccceEEEEeh
Confidence 55555554444444432222222233333344444 445899999999999632 2233322 122222233 3322
Q ss_pred ---------cChHHHHHHHHHHHHHhccC
Q 014486 122 ---------HTRELAYQICHEFERFSTYL 141 (423)
Q Consensus 122 ---------P~~~L~~q~~~~~~~~~~~~ 141 (423)
-+.-|+.++.+.++++....
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Confidence 34456677777777776653
No 390
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.15 Score=46.34 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.3
Q ss_pred CceEEEccCCCcchhH
Q 014486 84 MDVICQAKSGMGKTAV 99 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~ 99 (423)
+.+++.||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5799999999999964
No 391
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.81 E-value=0.89 Score=43.61 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=74.9
Q ss_pred ccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchH---HHHHHHhcCC
Q 014486 90 AKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK---IHKDLLKNEC 166 (423)
Q Consensus 90 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 166 (423)
.-.++||+..-++++.+....+ -.|.+||.+-+.+-|.|.+.++. .++++++.+++|..... +....+..+.
T Consensus 364 elvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 3357788877777666655544 44578999999999999988886 33689999999986543 3345667788
Q ss_pred CcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch
Q 014486 167 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (423)
Q Consensus 167 ~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~ 201 (423)
..++||| +++.+ ..++.++++||-+++-.
T Consensus 439 IwvLicT-----dll~R-GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR-GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred eeEEEeh-----hhhhc-cccccCcceEEecCCCc
Confidence 8999999 33343 47899999999987763
No 392
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.80 E-value=0.24 Score=46.25 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=15.0
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.+++|.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999764
No 393
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=0.4 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.4
Q ss_pred CceEEEccCCCcchhHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLST 104 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~ 104 (423)
+..|+.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999998765433
No 394
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.79 E-value=0.38 Score=50.28 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=63.4
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC-ccccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~-~~~~Gld~~~~~~vi 361 (423)
.+.+++|.+|+...|.+.++.+++. ++.+..+++..+..++..+++...+|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4568999999999999998887753 56777899999999999999999999999999995 455567788888877
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 395
>PRK07004 replicative DNA helicase; Provisional
Probab=93.76 E-value=0.35 Score=46.47 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=53.4
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH-
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK- 159 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 159 (423)
.|.-++|.|.+|+|||..++--+.......+. .+++++. -.-..|+..++-.... ++....+ .|..+..++.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~--~v~~fSl-EM~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL--PVAVFSM-EMPGTQLAMRMLGSVG---RLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCC--eEEEEeC-CCCHHHHHHHHHHhhc---CCCHHHHhcCCCCHHHHHH
Confidence 34558999999999997655433333322221 4555542 2333444443322111 2222211 1222222221
Q ss_pred -----HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 160 -----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 160 -----~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
..+.+ ..+.|. |+..+....++.......+++||||=.+.+..
T Consensus 286 ~~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 286 LTHAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 22222 244442 34444333222111123578999999998863
No 396
>PRK05748 replicative DNA helicase; Provisional
Probab=93.63 E-value=0.5 Score=45.43 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=54.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHHH--
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 159 (423)
|.-++|.|+||.|||...+-.+.......+. .+++++. -.-..|+..++-.... ++....+ .|.....++.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~--~v~~fSl-Ems~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDK--NVAIFSL-EMGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCC--eEEEEeC-CCCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 4558999999999997655444443322221 4555542 3344555554432211 2222111 1222222211
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 160 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 160 ----~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
..+.+. .+.|. |++.+...++.......++++||||=.|.+.
T Consensus 277 ~~a~~~l~~~--~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 277 TIAMGSLSDA--PIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 122222 34442 3444444332211111257899999999885
No 397
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.57 E-value=0.15 Score=43.92 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=23.1
Q ss_pred cEEEEcCcchhh-cc---CCcHHHHHHHHHhCCC-CceEEEEeccC
Q 014486 192 RHFILDECDKML-ES---LDMRRDVQEIFKMTPH-DKQVMMFSATL 232 (423)
Q Consensus 192 ~~vVvDE~h~~~-~~---~~~~~~~~~~~~~~~~-~~~~v~~SAT~ 232 (423)
-+||+||+|.+. .. ..+...+..++..... ....+.++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 579999999998 21 2344556666665322 23334455553
No 398
>PRK10436 hypothetical protein; Provisional
Probab=93.56 E-value=0.087 Score=50.29 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=26.1
Q ss_pred Chhhhhccccccc--CCceEEEccCCCcchhHHHHHHhhccC
Q 014486 70 SEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 70 ~~~Q~~~i~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.+.|.+.+..++. +.-++++||||||||.+. ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 3556666655554 344899999999999764 44555544
No 399
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.54 E-value=0.6 Score=43.23 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=21.8
Q ss_pred Chhhhhccccccc---CCceEEEccCCCcchhH
Q 014486 70 SEVQHECIPQAIL---GMDVICQAKSGMGKTAV 99 (423)
Q Consensus 70 ~~~Q~~~i~~~~~---~~~~ii~~~tGsGKT~~ 99 (423)
.+.-.++|+.+.- |+..+|.||.|+|||..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 3444555555553 67899999999999964
No 400
>PRK08006 replicative DNA helicase; Provisional
Probab=93.51 E-value=0.68 Score=44.59 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHHH-
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKD- 160 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 160 (423)
|.-++|.|.+|.|||..++-.+.......+ . .+++++. -.-..|+..++-.... ++....+. |..+..++.+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g-~-~V~~fSl-EM~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQD-K-PVLIFSL-EMPGEQIMMRMLASLS---RVDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcC-C-eEEEEec-cCCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 445899999999999765543433332222 1 4555543 2334455544433221 22222222 2222222221
Q ss_pred -----HHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 161 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 161 -----~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
.+... ..+.|- |+..+....+........+++||||=.|.+.
T Consensus 298 ~~a~~~~~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 298 SGTMGILLEK-RNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 12121 234442 3444443332211112357899999999875
No 401
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.48 E-value=0.62 Score=49.37 Aligned_cols=43 Identities=9% Similarity=0.290 Sum_probs=33.7
Q ss_pred ccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCc
Q 014486 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234 (423)
Q Consensus 191 ~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~ 234 (423)
--+||+|++|.+.+ ......+..+....+....+|+.|-+.|+
T Consensus 122 ~~~lvlDD~h~~~~-~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITN-PEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCC-hHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34799999998864 45566788888888888888888888543
No 402
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.42 E-value=0.12 Score=44.87 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=12.2
Q ss_pred eEEEccCCCcchhH
Q 014486 86 VICQAKSGMGKTAV 99 (423)
Q Consensus 86 ~ii~~~tGsGKT~~ 99 (423)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 403
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.36 E-value=0.5 Score=43.87 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.8
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
+..++.||.|+|||..+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457999999999997653
No 404
>PRK08506 replicative DNA helicase; Provisional
Probab=93.35 E-value=0.66 Score=44.83 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=55.6
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHH--
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 159 (423)
|.-+++.|.||.|||..++-.+..... .+ ..+++++. -.-..|+..++-.... ++....+. |..+...+.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~-~g--~~V~~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALN-QD--KGVAFFSL-EMPAEQLMLRMLSAKT---SIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHh-cC--CcEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 445899999999999766554444332 22 25566543 3445555554433222 22221111 222222221
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 160 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 160 ----~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
..+.+. .+.|. |+..+...++.......++++||||=.+.+..
T Consensus 265 ~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 265 SDACDELSKK--KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHcC--CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 122232 34332 44455443332111123578999999998763
No 405
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.33 E-value=0.097 Score=47.79 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=26.4
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.+++++++|+||||||.. +-+++....... +++.+=.+.++
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~~~---ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPAIE---RLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCCCC---eEEEecCCCcc
Confidence 478899999999999964 344444443322 55555444444
No 406
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.33 E-value=0.068 Score=46.83 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=33.2
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
++.++++.||+|+|||..+.....+.. ..+ ..++++++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g---~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG---ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC---CeEEEEEHHHHHHHHHHHH
Confidence 678899999999999987544333333 322 4466677778877765433
No 407
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.32 E-value=0.05 Score=52.81 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHh
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
+|+.+|.+.+..+++ |+-.|...|||+|||+..+=.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 688899887776664 78899999999999987544444
No 408
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.55 Score=45.40 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.6
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
-.++.||.|+|||.++.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999987654
No 409
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.31 E-value=0.17 Score=46.74 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=19.4
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.+..++++||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3566999999999999753 44555443
No 410
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.28 E-value=0.64 Score=44.55 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=29.1
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
|.-++|.|++|+|||...+-.+.......+. .+++++. -.-..|+..++..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~--~vl~~Sl-Em~~~~i~~R~~~ 245 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGK--PVAFFSL-EMSAEQLAMRMLS 245 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCC--eEEEEeC-cCCHHHHHHHHHH
Confidence 4458999999999997655444443332221 5666653 2334444444433
No 411
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.28 E-value=1.3 Score=36.73 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=74.5
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 160 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (423)
.....+++..++|.|||.+++-.++..+..+. +++++.=.+--.. ..+...+ ...+++.......+..+...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~--~GE~~~l-~~l~~v~~~~~g~~~~~~~~-- 91 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWS--TGERNLL-EFGGGVEFHVMGTGFTWETQ-- 91 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCc--cCHHHHH-hcCCCcEEEECCCCCcccCC--
Confidence 34567999999999999988776666665543 6666642111000 0111111 11223333322221111000
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC--cHHHHHHHHHhCCCCceEEEEeccCCccHHH
Q 014486 161 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD--MRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 238 (423)
Q Consensus 161 ~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~ 238 (423)
. ..--.......+..... .+.-..+++||+||+=...+ .+ ....+..+++..|...-+|+..-.+|+++..
T Consensus 92 ----~-~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~-~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 92 ----D-RERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALK-YGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ----C-cHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHH-CCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0 00000001111111111 11235678999999987766 33 3456777777777777777777777777665
Q ss_pred HH
Q 014486 239 VC 240 (423)
Q Consensus 239 ~~ 240 (423)
.+
T Consensus 165 ~A 166 (191)
T PRK05986 165 AA 166 (191)
T ss_pred hC
Confidence 53
No 412
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.27 E-value=0.22 Score=43.92 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=26.3
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
.|.-++|.|++|+|||...+..+.+.+..+. ++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 3556899999999999876665555444322 678877
No 413
>PRK08840 replicative DNA helicase; Provisional
Probab=93.25 E-value=0.71 Score=44.36 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=29.6
Q ss_pred ccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
-+..|.-+++.|.||.|||..++-.+.......+ . .+++++.- .-..|+..++-
T Consensus 213 G~~~g~LiviaarPg~GKTafalnia~~~a~~~~-~-~v~~fSlE-Ms~~ql~~Rll 266 (464)
T PRK08840 213 GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQD-K-PVLIFSLE-MPAEQLMMRML 266 (464)
T ss_pred CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCC-C-eEEEEecc-CCHHHHHHHHH
Confidence 3334455899999999999765443333332222 1 45565532 33445554443
No 414
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.053 Score=47.80 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.2
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
++..|+++.||||||||+.+
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 34467999999999999754
No 415
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.18 E-value=0.15 Score=42.50 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred CChhhhhccccccc-CCceEEEccCCCcchhHH
Q 014486 69 PSEVQHECIPQAIL-GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~ 100 (423)
+.+.|...+..... +..+++.||||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 45666666655554 677999999999999753
No 416
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.15 E-value=0.58 Score=47.07 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||||.+.. .....+.+.+..-+....+|+++
T Consensus 117 g~~KV~IIDEa~~LT~--~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK--SAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCH--HHHHHHHHHhhcCCCceEEEEEc
Confidence 5678999999998864 23334444445444444444444
No 417
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.12 E-value=1.8 Score=40.34 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=25.0
Q ss_pred EEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 87 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 87 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
++.++.|+|||......++..+...+....++++ |+..-+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHH
Confidence 5778999999998877777766555543355555 55544444
No 418
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.12 E-value=1.4 Score=44.59 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCChhhhhccccccc----CCceEEEccCCCcchhHHHHHHhhc---cC-----------C--------C----------
Q 014486 68 HPSEVQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQ---TE-----------P--------N---------- 111 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~---~~-----------~--------~---------- 111 (423)
+|++.|..-+..++. ..++++..|||+|||++.+-..++. +. . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678889877766664 5779999999999998765544431 11 0 0
Q ss_pred --C-----CCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 112 --P-----GQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 112 --~-----~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
+ +.|++.|-+-|..-..|+.+++++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 23677788888888888888887753
No 419
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.11 E-value=0.11 Score=48.82 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=35.4
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
++++.||||+|||..+++|-+.... ..++|+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----CCEEEEccchhHHHHHHHHHHH
Confidence 4789999999999998877666432 2678888888888776655444
No 420
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.18 Score=51.11 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=54.5
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhc
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFST 139 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (423)
.+++-|++++.+. ...++|.+..|||||.+..--+.......+ .+..++.++=|+-.|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998766 567888899999999987666666555432 223688888888889999999988875
No 421
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.88 E-value=0.79 Score=47.06 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
..+.++.||+|+|||..+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999764
No 422
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.3 Score=44.72 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
....+++||||+|.+.. .....+.+.++.-+....+|++|..
T Consensus 108 ~~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred ccCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEEEeCC
Confidence 35678999999998864 4455566666666666666665543
No 423
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.099 Score=50.29 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred cCCcccccCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 37 KKGYVGIHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+|..++..+|++.+--..+...|+-. ..++|-.|++-.+.. -..++++||+|+|||+.+
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 4467777778899998777776666543 344444444444322 456999999999999743
No 424
>PRK09087 hypothetical protein; Validated
Probab=92.63 E-value=0.45 Score=40.90 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.||+|+|||...
T Consensus 44 ~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 344899999999999743
No 425
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.62 E-value=0.64 Score=44.51 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|.-+++.|++|+|||...+..+...... +.+++|+.-. +-..|+..++.++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 3458999999999998655544443322 2277888753 4456666666554
No 426
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.53 E-value=0.48 Score=50.78 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC-ccccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~-~~~~Gld~~~~~~vi 361 (423)
.+.+++|.+++...|.++++.+++. ++.+..+++..+..++..+++...+|..+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4578999999999999998888753 45677789999999999999988899999999995 344456677777766
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 3
No 427
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.51 E-value=1.3 Score=41.40 Aligned_cols=46 Identities=13% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
+.+|+++.-.+.+.+.+... ++..-+ .+..++.||.|+|||..+..
T Consensus 13 P~~~~~iig~~~~~~~l~~~-------i~~~~~-----~~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNA-------IENNHL-----AQALLFCGPRGVGKTTCARI 58 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHH-------HHcCCC-----CeEEEEECCCCCCHHHHHHH
Confidence 44566666565555544432 111000 14688999999999976543
No 428
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.51 E-value=0.68 Score=44.39 Aligned_cols=39 Identities=10% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...++||+||+|.+.. .....+.+.+..-+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~--~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK--EAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCH--HHHHHHHHHhhcCCCCceEEEEe
Confidence 4678999999998864 22334455555544455555544
No 429
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.44 E-value=0.19 Score=48.68 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=37.1
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.++++.||||||||..+++|.+.... + .++|.=|-.+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---~--s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---G--SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---C--CEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999999888775422 1 5677778888887776655554
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.41 E-value=1.2 Score=45.96 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=32.3
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
....|++.+-.+.+.+.|... .+..+..++... +...+.+++.||+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 345677777767776666553 222222222221 223456999999999999754
No 431
>PRK04328 hypothetical protein; Provisional
Probab=92.41 E-value=0.23 Score=43.43 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=32.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|..+++.|++|+|||...+..+.+.+..+. ++++++ +.+-..++.+.++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEE-eeCCHHHHHHHHHHc
Confidence 556899999999999766555555444332 667776 333444555555555
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.33 E-value=0.49 Score=43.96 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=18.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|+.++|.||+|+|||..... +...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 477899999999999975332 44433
No 433
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.26 Score=46.74 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=37.6
Q ss_pred cCCCCCHHHHHHHHhCCCCCCChhhhhcccc-------ccc-----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeE
Q 014486 49 RDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-------AIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVT 116 (423)
Q Consensus 49 ~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-------~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 116 (423)
..|+.+++-++.....|+-.-.+.=.+.+.. +.. -.++++.||.|||||..+. .+......|-
T Consensus 492 PAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S~FPF 566 (744)
T KOG0741|consen 492 PAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSSDFPF 566 (744)
T ss_pred cccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhcCCCe
Confidence 3577777777777766654222222222211 111 1358999999999995332 2222223345
Q ss_pred EEEEecC
Q 014486 117 ALVLCHT 123 (423)
Q Consensus 117 ~lil~P~ 123 (423)
+=+++|.
T Consensus 567 vKiiSpe 573 (744)
T KOG0741|consen 567 VKIISPE 573 (744)
T ss_pred EEEeChH
Confidence 6666664
No 434
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=0.87 Score=42.24 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=17.9
Q ss_pred CceEEEccCCCcchhHHHHHHhhccC
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.++++.|+||+|||.+.-. ++.++.
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHH
Confidence 3599999999999987543 333333
No 435
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.29 E-value=1.4 Score=43.94 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=22.8
Q ss_pred cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEE
Q 014486 80 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALV 119 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 119 (423)
+..|..+-+.||+|||||... -++.++.....+ .+++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~--~LL~r~~~~~~G-~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLI--KLLLRLYDPTSG-EILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHH--HHHhccCCCCCC-eEEE
Confidence 445777889999999998643 344444333222 4444
No 436
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.27 E-value=0.18 Score=48.72 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=24.8
Q ss_pred ChhhhhcccccccCC--ceEEEccCCCcchhHHHHHHhhccC
Q 014486 70 SEVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.+.|.+.+..++... -++++||||||||... ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 344555555555432 3789999999999764 34555554
No 437
>PRK13764 ATPase; Provisional
Probab=92.24 E-value=0.22 Score=49.04 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
+++++++||||||||... .+++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 567999999999999753 44554444
No 438
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.21 E-value=0.18 Score=42.39 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
++++||||||||... ..++..+.....+ +++.+-.
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~~~-~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNKTH-HILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcCCc-EEEEEcC
Confidence 789999999999764 3344444332222 4454443
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.20 E-value=0.13 Score=45.74 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=28.1
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.+.+++++|+||||||... ..++...... ..+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 4678999999999999764 4455554444 1267777666554
No 440
>PRK08760 replicative DNA helicase; Provisional
Probab=92.20 E-value=0.62 Score=45.00 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=54.4
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHH--
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 159 (423)
|.-++|.|.+|.|||...+-.+.......+. .+++++. -.-..|+..++...... +....+. |..+..++.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~--~V~~fSl-EMs~~ql~~Rl~a~~s~---i~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK--GVAVFSM-EMSASQLAMRLISSNGR---INAQRLRTGALEDEDWARV 302 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC--ceEEEec-cCCHHHHHHHHHHhhCC---CcHHHHhcCCCCHHHHHHH
Confidence 4458999999999997655444433332222 4555543 23345555555443222 2211111 222222221
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 160 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 160 ----~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
..+.+. .+.|. |++.+...++.... -.++++||||=.+.+.
T Consensus 303 ~~a~~~l~~~--~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 303 TGAIKMLKET--KIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHhcC--CEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122222 34433 34444443322111 1357899999999885
No 441
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.13 E-value=1.8 Score=43.27 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=29.8
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
....+..++++..++..++.+... .+...+ ....++-+++.||+|+|||.++
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~-------l~~~~~-~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETW-------LKAQVL-ENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHH-------HHhccc-ccCCCcEEEEECCCCCCHHHHH
Confidence 334455677777777666555432 000000 1112344899999999999864
No 442
>PHA00012 I assembly protein
Probab=92.07 E-value=0.54 Score=42.07 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.8
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCC
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPN 111 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~ 111 (423)
-++.|..|+|||+.++.-+...+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998887777766644
No 443
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.06 E-value=1.1 Score=46.01 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+|++++-.....+.+.+. .+.+|..++... +..++.+++.||+|+|||..+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 34677776555555555443 222222233222 234567999999999999753
No 444
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.02 E-value=0.25 Score=48.85 Aligned_cols=49 Identities=22% Similarity=0.064 Sum_probs=39.1
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.++++.||||||||..+++|-+.... ..++|+=|--++....+...++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-----~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-----DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-----CCEEEEeCcHHHHHHHHHHHHHC
Confidence 46999999999999999999887642 15788888889888777666554
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.98 E-value=0.24 Score=43.74 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHhCCCCCCChhhhhccccccc--CCceEEEccCCCcchhHHHHHHhhccC
Q 014486 60 AIVDSGFEHPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 60 ~l~~~~~~~~~~~Q~~~i~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.|.+.|+ .+.|.+.+..++. +..+++.|+||||||... ..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 3445554 4566666666554 334899999999999754 33444443
No 446
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=0.77 Score=41.69 Aligned_cols=40 Identities=5% Similarity=0.235 Sum_probs=28.3
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
...+++|+|++|.+.. .....+.+.++.-+ ...++++|..
T Consensus 123 ~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 123 APRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 5789999999998864 45556667777666 5656666544
No 447
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.95 E-value=0.2 Score=46.00 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 57 LLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 57 ~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
-++.|.+.|+ +.+.+...+..+.. +.++++.|+||+|||... -.++..+.... +.+++-.+.+|
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~---riv~iEd~~El 217 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDE---RIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCC---cEEEECCccee
Confidence 3456666555 34566666655554 578999999999999643 33444433322 55666555554
No 448
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.91 E-value=0.1 Score=42.86 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred CcEEEechHHHHHHHhcCCC--CCCCccEEEEcCcchhhc
Q 014486 167 PQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLE 204 (423)
Q Consensus 167 ~~ilv~T~~~l~~~~~~~~~--~~~~~~~vVvDE~h~~~~ 204 (423)
.+|+|+++..|+.-...... ...+-.+|||||||.+.+
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 59999999988763222111 123446899999998865
No 449
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=1.3 Score=46.19 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=39.7
Q ss_pred CcccccCCCCcCCCCCHHHHHHHHhCCCC-CCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 39 GYVGIHSSGFRDFLLKPELLRAIVDSGFE-HPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 39 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+...-....|++.+....++..|+++-+. -++|-+-.-+ ++..-+.++..||.|+|||+.+
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 33333456799999888888888887332 2233222221 2334567999999999999754
No 450
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.81 E-value=3.4 Score=37.22 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.7
Q ss_pred CCceEEEccCCCcchhH
Q 014486 83 GMDVICQAKSGMGKTAV 99 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~ 99 (423)
++++++.||-|||||..
T Consensus 49 snsviiigprgsgkT~l 65 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCceEEEccCCCCceEe
Confidence 46799999999999963
No 451
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.78 E-value=0.3 Score=42.54 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=28.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHH
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
..+..|++|-=.+.+.++|.-+ -+-...+.+++ .++++.||+|.|||..+.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~if--I~AAk~r~e~l------DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIF--IKAAKKRGEAL------DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHH--HHHHHhcCCCc------CeEEeeCCCCCcHHHHHH
Confidence 3455677776566665555421 00001111121 348999999999997543
No 452
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.75 E-value=0.69 Score=47.25 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
..+.++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999764
No 453
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.73 E-value=1.1 Score=40.50 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=61.0
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (423)
+.+.+.|+.|.|||. ++-..-...+...+ .-++.-.-+..+.+++..+...
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~~k----~R~HFh~FM~~vH~~l~~l~g~----------------------- 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGERK----RRLHFHRFMARVHQRLHTLQGQ----------------------- 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCcccc----ccccHHHHHHHHHHHHHHHcCC-----------------------
Confidence 568999999999996 34444444433221 1245556667777666655311
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHH-hCCCCceEEEEeccCCccH
Q 014486 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~-~~~~~~~~v~~SAT~~~~~ 236 (423)
.+.+- .+..-+ ..+.+++.+||.|.-. ..-.-.+.+++. .+.....++..|-|.|..+
T Consensus 117 ---~dpl~----~iA~~~------~~~~~vLCfDEF~VtD--I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 ---TDPLP----PIADEL------AAETRVLCFDEFEVTD--IADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ---CCccH----HHHHHH------HhcCCEEEeeeeeecC--hHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11111 011111 1345689999999431 222333444433 3455788888888888764
No 454
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.70 E-value=0.21 Score=49.39 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=26.3
Q ss_pred ChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccC
Q 014486 70 SEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.+.|.+.+..++.. ..++++||||||||.+. ..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 35566666665553 34789999999999764 44555553
No 455
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.62 E-value=0.46 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.+.++.||+|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999997653
No 456
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.56 E-value=0.57 Score=46.00 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=67.5
Q ss_pred HHHHHHHHHhh-cCCcEEEEEcChh----hHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-cc
Q 014486 276 NRKLNDLLDAL-DFNQVVIFVKSVS----RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VG 349 (423)
Q Consensus 276 ~~~l~~ll~~~-~~~~~ivf~~~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~~ 349 (423)
.-.+..++... .+.++.+..++.= +...+.+.|...|+.+..+.|.+....|.+++....+|+++++|.|-+ +.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33344444444 3457888888854 555566667777999999999999999999999999999999999965 66
Q ss_pred cCCCCCCCCEEEE
Q 014486 350 RGIDIERVNIVIN 362 (423)
Q Consensus 350 ~Gld~~~~~~vi~ 362 (423)
..+++.++-.||.
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 7888888887774
No 457
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=1.7 Score=43.42 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=26.6
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
+...+++|+||+|.+.. .....+.+.++..+....+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45788999999998864 34445666666655555455544
No 458
>PRK09165 replicative DNA helicase; Provisional
Probab=91.51 E-value=1.9 Score=42.03 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=55.3
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCC------------CCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEE
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 150 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 150 (423)
|.-++|.|.||.|||..++-.+....... ..+..++|++. -.-..|+..++..... ++....+.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s---~v~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQS---EISSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHh
Confidence 44589999999999976544333332210 01225666643 3445555555543322 22221122
Q ss_pred -cCcchHHHH------HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 151 -GGVNIKIHK------DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 151 -~~~~~~~~~------~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
|..+..++. ..+.. ..+.|. |++.+...++.... -.++++||||=.|.+..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~--~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK--LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 222222211 11222 234432 34445443332111 13578999999998753
No 459
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.48 E-value=0.79 Score=47.97 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=64.9
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc-CccccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T-~~~~~Gld~~~~~~vi 361 (423)
.+.++.|.+++.=.|++-++.++++ ++++..++.-.+..+...+++...+|+++|+|+| ..++.++-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4568999999988888777777665 5566678888999999999999999999999998 6788899999999887
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 4
No 460
>PF12846 AAA_10: AAA-like domain
Probab=91.43 E-value=0.19 Score=45.42 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
+.++++.|+||+|||.... .++......+. .++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~g~--~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRRGP--RVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHcCC--CEEEEcCCchH
Confidence 3578999999999997765 44444333332 55666555443
No 461
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.34 E-value=0.78 Score=39.43 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCC---CCCeEEEEEecCh
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 124 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 124 (423)
|.-+.|.||+|+|||...+..+....... +...+++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45689999999999987665444433332 1123677777543
No 462
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.29 Score=52.62 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=45.6
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
.+++++|.|..|||||.+...-++..+...+ ....+|+++-|++-+..+..++.+-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 3678999999999999987777777666642 33489999999999998888887543
No 463
>PRK05636 replicative DNA helicase; Provisional
Probab=91.18 E-value=1 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=16.2
Q ss_pred CCceEEEccCCCcchhHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLST 104 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~ 104 (423)
|.-++|.|.||.|||..++-.+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a 286 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFM 286 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHH
Confidence 3447899999999997655433
No 464
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.17 E-value=0.57 Score=39.10 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=37.2
Q ss_pred hhcccccc-cCCceEEEccCCCcchhHHHHHHhhccCCC-------CCCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 74 HECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 74 ~~~i~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
...++.++ .|.-+++.||+|+|||...+-.+....... ..+.+++++..-.. ..++.+++....
T Consensus 22 ~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 22 DWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp -EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred ceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 34444555 466699999999999987655444443211 12347777776544 556677776655
No 465
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.13 E-value=1.7 Score=38.49 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=14.2
Q ss_pred CceEEEccCCCcchhH
Q 014486 84 MDVICQAKSGMGKTAV 99 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~ 99 (423)
+++++.+|+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 5789999999999974
No 466
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.09 E-value=0.19 Score=32.95 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.1
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+...++.+++|+|||...
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456999999999999753
No 467
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.08 E-value=0.47 Score=51.40 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhc
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 139 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 139 (423)
.++++|.|+.|||||.+.+--++..+..+....++++|+-|+.-+.++.+++.+...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 467999999999999887666665554444344899999999999999888876653
No 468
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.97 E-value=0.92 Score=41.13 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=25.9
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCC---CCCCeEEEEEecCh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHTR 124 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~ 124 (423)
.-+.+.||+|+|||...+..++....+ .+.+.+++|+.--.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 347899999999997665544433222 12233888887443
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.94 E-value=0.63 Score=45.94 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=16.6
Q ss_pred cccCCceEEEccCCCcchhH
Q 014486 80 AILGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~ 99 (423)
+..|+.+.+.||+|||||..
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577899999999999964
No 470
>PHA02542 41 41 helicase; Provisional
Probab=90.92 E-value=0.59 Score=44.96 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=22.4
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
.-+++.|.+|.|||..++-.+..... .+ ..++++.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~-~g--~~Vl~fS 225 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQ-QG--YNVLYIS 225 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHh-cC--CcEEEEe
Confidence 34889999999999876554444432 22 2555554
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=90.85 E-value=0.34 Score=41.70 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=23.9
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.+++.|++|||||.. ++.++..+...- ..+++++|.
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~~ 50 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITPE 50 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEecC
Confidence 689999999999964 444555444333 255666673
No 472
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.80 E-value=1.5 Score=37.78 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=24.6
Q ss_pred cCC-ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 82 LGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 82 ~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
.++ -+.++|+.|||||...= ++++....+. .++++.|-..+
T Consensus 49 d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~---~~~v~i~~~~~ 90 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRR-ALLASLNEDQ---VAVVVIDKPTL 90 (269)
T ss_pred cCCceEEEEecCCCchhHHHH-HHHHhcCCCc---eEEEEecCcch
Confidence 344 48899999999998754 3444443222 44445444433
No 473
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.79 E-value=1.2 Score=41.58 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.3
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
+.+++.+|.|+|||...
T Consensus 187 rglLLfGPpgtGKtmL~ 203 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLA 203 (428)
T ss_pred chhheecCCCCchHHHH
Confidence 46899999999999643
No 474
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.76 E-value=0.33 Score=43.96 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCChhhhhcccccc-cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 67 EHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
..+.+.|..-+..+. .+++++++|+||||||.. +.+++....... +.+.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEeccccc
Confidence 356677765544444 578899999999999964 444555444333 56666555543
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.66 E-value=0.39 Score=44.26 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=24.5
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
+..++++||||||||... ..++..+...... +++.+-...+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~-~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAAG-HIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCCC-EEEEEcCChh
Confidence 456899999999999754 3344444322222 5555544333
No 476
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.61 E-value=0.3 Score=45.41 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN 111 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~ 111 (423)
.+.++|++++.+.+.|.+. ...++++||+|+|||. |..++.+.+...
T Consensus 244 ~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsT-FaqAlAefy~~~ 290 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKST-FAQALAEFYASQ 290 (604)
T ss_pred echhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhH-HHHHHHHHHHhc
Confidence 3577888998888877642 2458999999999995 444444444433
No 477
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.52 E-value=1.5 Score=45.38 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.0
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999754
No 478
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.45 E-value=0.49 Score=41.75 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=35.4
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.|+.++|.|++|+|||.-.+-.+...+..+. ++++++- .+...++.+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHc
Confidence 4577999999999999876665666555522 5677664 34555566666554
No 479
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.39 E-value=1.7 Score=38.00 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=19.8
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
-.|+.+++.||.|+|||... -.+.....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL-QSIANAIT 41 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 35788999999999999643 33444443
No 480
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.31 E-value=1.6 Score=41.97 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=63.2
Q ss_pred CCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcE
Q 014486 93 GMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQI 169 (423)
Q Consensus 93 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i 169 (423)
...|-.. +..++.... .....++||.|-|+.-|.++...+++. ++++..+||+.+..+.... +.++.+.|
T Consensus 322 ~~~K~~~-l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~v 394 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPV 394 (519)
T ss_pred HHHHHHH-HHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcce
Confidence 4445432 344555444 333349999999999999988877763 4689999999887766544 45688899
Q ss_pred EEechHHHHHHHhcCCCCCCCccEEEE
Q 014486 170 VVGTPGRILALARDKDLSLKNVRHFIL 196 (423)
Q Consensus 170 lv~T~~~l~~~~~~~~~~~~~~~~vVv 196 (423)
+|+|-- -...+++.++++||-
T Consensus 395 LVATdV------AaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 395 LVATDV------AARGLDVPDVDLVIN 415 (519)
T ss_pred EEEccc------ccccCCCccccEEEe
Confidence 999942 234567777777763
No 481
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.29 E-value=0.48 Score=42.40 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.1
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+.++++.||+|+|||.++
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3457999999999999865
No 482
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.29 E-value=0.35 Score=43.86 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.+.++++.||||||||..
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477899999999999974
No 483
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.06 E-value=0.58 Score=46.96 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=36.4
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
.++++.||||||||..+++|-+..... .++|+=|--++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~g-----S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG-----SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCC-----CEEEEeCCchHHHHHHHHHHh
Confidence 479999999999999999988776431 567777888877665554443
No 484
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.00 E-value=3.1 Score=33.89 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=37.3
Q ss_pred CCccEEEEcCcchhhccCC--cHHHHHHHHHhCCCCceEEEEeccCCccHHHHH
Q 014486 189 KNVRHFILDECDKMLESLD--MRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 240 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~--~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~ 240 (423)
..+++||+||+=...+ .+ ....+..+++..|...-+|+..-.+|+.+...+
T Consensus 96 ~~~DlvVLDEi~~A~~-~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALK-YGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHH-CCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 5678999999987765 33 344566777777777778888877887766553
No 485
>PRK06321 replicative DNA helicase; Provisional
Probab=89.99 E-value=3.6 Score=39.76 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHHH--
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 159 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 159 (423)
|.=++|.|.+|.|||.-++-.+.......+ . .+++++. ..-..|+..++-.... ++....+. +..+..++.
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~g-~-~v~~fSL-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQNR-L-PVGIFSL-EMTVDQLIHRIICSRS---EVESKKISVGDLSGRDFQRI 299 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcC-C-eEEEEec-cCCHHHHHHHHHHhhc---CCCHHHhhcCCCCHHHHHHH
Confidence 344789999999999765543333222222 1 4555542 2334444444433221 22222222 222222222
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 160 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 160 ----~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
..+.+. .+.|- |.+.+....+.... -.++++||||=.+.+.
T Consensus 300 ~~a~~~l~~~--~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 300 VSVVNEMQEH--TLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHcC--CEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 222222 35443 34444443332111 1357899999999885
No 486
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.87 E-value=0.5 Score=45.86 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=39.9
Q ss_pred hccccccc-----CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 75 ECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 75 ~~i~~~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
..++.++. |..+++.+|+|+|||...+..+.+.+..+. +++|++ .-+-..|+..++..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKE---RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEE-eeCCHHHHHHHHHHc
Confidence 44555554 345899999999999876665555544332 778877 446667777777665
No 487
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.79 E-value=0.86 Score=36.24 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=24.2
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..+++.+++|+|||... .-+.+.+...+-. ..=+++|
T Consensus 6 mki~ITG~PGvGKtTl~-~ki~e~L~~~g~k-vgGf~t~ 42 (179)
T COG1618 6 MKIFITGRPGVGKTTLV-LKIAEKLREKGYK-VGGFITP 42 (179)
T ss_pred eEEEEeCCCCccHHHHH-HHHHHHHHhcCce-eeeEEee
Confidence 35899999999999754 4456555555433 3344555
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.76 E-value=0.73 Score=39.60 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
+..+++.|++|+|||...+..+...+..+. ++++++.. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~---~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGE---KAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC-CCHHHHHHHHHHc
Confidence 456899999999999765554544444322 67777654 3456666666554
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.72 E-value=1.3 Score=42.49 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|.-+++.|++|+|||...+..+...... + .+++|+..- +-..|+..++.++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~-g--~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN-Q--MKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc-C--CcEEEEECc-CCHHHHHHHHHHc
Confidence 3458999999999998765544433332 2 267888754 4456666655554
No 490
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.58 E-value=0.72 Score=40.52 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=30.1
Q ss_pred hcccccccC-----CceEEEccCCCcchhHHHHHHhhccCC---CCCCeEEEEEecCh
Q 014486 75 ECIPQAILG-----MDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHTR 124 (423)
Q Consensus 75 ~~i~~~~~~-----~~~ii~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~ 124 (423)
..++.++.| .-.=++|+.|+|||-..+..++....+ ++...+++|+.-..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 345555553 235589999999997655444443322 23334889986443
No 491
>PRK14701 reverse gyrase; Provisional
Probab=89.55 E-value=1.7 Score=48.43 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=52.7
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC------CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL 347 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~ 347 (423)
.+.++||.+|++..+.++.+.|+.. +..+..+||+++..++.+.++.+.+|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998888763 456778999999999998888999999999999964
No 492
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.55 E-value=0.5 Score=39.99 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=22.8
Q ss_pred ccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecC
Q 014486 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHT 123 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~ 123 (423)
.+....+++|.|.||+|||......+...+.. ++.. .-++++..
T Consensus 34 dl~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~-~~l~iiD~ 78 (205)
T PF01580_consen 34 DLKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDD-VQLYIIDP 78 (205)
T ss_dssp EGGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTT-EEEEEE-T
T ss_pred EcCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCc-cEEEEEcC
Confidence 34445689999999999997654333333332 2333 33555543
No 493
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.51 E-value=2.1 Score=37.44 Aligned_cols=46 Identities=11% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccH
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (423)
..+++||+-||+.+.. +....+++-.......+++|+.--+..+-+
T Consensus 126 r~fKvvvi~ead~LT~--dAQ~aLRRTMEkYs~~~RlIl~cns~SriI 171 (351)
T KOG2035|consen 126 RPFKVVVINEADELTR--DAQHALRRTMEKYSSNCRLILVCNSTSRII 171 (351)
T ss_pred cceEEEEEechHhhhH--HHHHHHHHHHHHHhcCceEEEEecCcccch
Confidence 4689999999999875 566667777777777777777665554443
No 494
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.50 E-value=1.8 Score=45.25 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
++.++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 579999999999997653
No 495
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.50 E-value=2.3 Score=42.36 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=56.3
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.|+++..+.++++.+... ++.+..++|+....+.. ..+.++..+|+|||.- + ...+++.++
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv-----~-arGIDip~V 326 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV-----A-ARGLHIDGV 326 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh-----h-hcCCCccCC
Confidence 38899999999999998887654 67899999987665443 4556777899999942 1 246788889
Q ss_pred cEEEEcCc
Q 014486 192 RHFILDEC 199 (423)
Q Consensus 192 ~~vVvDE~ 199 (423)
++||.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 98886554
No 496
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=3 Score=41.52 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc
Q 014486 188 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
+.+..++|+|||-..++ ......++..+..+.++.
T Consensus 620 lr~P~VLILDEATSALD-aeSE~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALD-AESEYLVQEALDRLMQGR 654 (716)
T ss_pred hcCCCEEEEechhhhcc-hhhHHHHHHHHHHhhcCC
Confidence 45677899999998887 566666677766555553
No 497
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=89.47 E-value=0.51 Score=48.22 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
..+|-|-+++..-.+.+.+.+.+|+|+|||-.+.- ++.-+.+....++++|++.+..-..|..+.+.+
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcCCCcceEEEEecccchhHHHHHHHh
Confidence 56889999998888888999999999999987654 444444444555999999998877777766644
No 498
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.46 E-value=0.47 Score=40.25 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=25.9
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
|.-+.+.||+|+|||...+..+.+....+ .+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECC
Confidence 45589999999999987665554444332 267777654
No 499
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.18 E-value=0.23 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=20.4
Q ss_pred cccccccCCceEEEccCCCcchhHHH
Q 014486 76 CIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 76 ~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
++..+..+.++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 33445568899999999999998654
No 500
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.06 E-value=0.25 Score=37.57 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=13.1
Q ss_pred eEEEccCCCcchhHH
Q 014486 86 VICQAKSGMGKTAVF 100 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~ 100 (423)
++|.|++|||||..+
T Consensus 2 I~I~G~~gsGKST~a 16 (121)
T PF13207_consen 2 IIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999754
Done!