Query 014486
Match_columns 423
No_of_seqs 205 out of 2451
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 12:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.7E-61 5.8E-66 458.7 40.5 364 44-412 54-424 (434)
2 1xti_A Probable ATP-dependent 100.0 1E-60 3.5E-65 449.7 39.5 371 44-414 6-376 (391)
3 2j0s_A ATP-dependent RNA helic 100.0 2.2E-58 7.4E-63 436.5 37.9 364 46-414 37-401 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.1E-57 3.8E-62 430.3 38.9 366 44-415 19-384 (400)
5 3eiq_A Eukaryotic initiation f 100.0 5.6E-58 1.9E-62 434.4 34.5 366 45-414 39-405 (414)
6 3fht_A ATP-dependent RNA helic 100.0 2.3E-57 7.8E-62 430.0 38.1 367 44-415 23-399 (412)
7 2i4i_A ATP-dependent RNA helic 100.0 1.7E-57 5.8E-62 431.5 36.3 363 43-410 12-397 (417)
8 3pey_A ATP-dependent RNA helic 100.0 1E-56 3.5E-61 423.1 37.5 358 45-409 4-370 (395)
9 1hv8_A Putative ATP-dependent 100.0 1.3E-55 4.6E-60 411.4 39.2 361 43-415 3-364 (367)
10 3fmp_B ATP-dependent RNA helic 100.0 6.9E-58 2.4E-62 440.9 21.8 366 45-415 91-466 (479)
11 1fuu_A Yeast initiation factor 100.0 4.1E-57 1.4E-61 425.7 20.0 365 45-415 20-385 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 2.4E-54 8.1E-59 424.7 31.6 358 53-412 28-414 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 4.3E-54 1.5E-58 422.8 31.3 358 53-412 79-465 (563)
14 2z0m_A 337AA long hypothetical 100.0 3E-53 1E-57 390.8 33.4 336 53-410 1-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 4.9E-54 1.7E-58 415.0 21.9 362 47-415 120-490 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 2.7E-52 9.3E-57 406.2 31.9 339 44-396 19-375 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 2.3E-51 8E-56 396.0 30.1 335 46-397 2-345 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.4E-49 4.8E-54 376.1 25.1 327 57-409 10-376 (414)
19 2ykg_A Probable ATP-dependent 100.0 6.6E-48 2.2E-52 388.4 22.0 334 58-395 3-516 (696)
20 3tbk_A RIG-I helicase domain; 100.0 2.9E-46 1E-50 367.4 29.2 325 68-397 4-509 (555)
21 4a2q_A RIG-I, retinoic acid in 100.0 1.5E-46 5.3E-51 381.5 27.3 331 63-397 243-751 (797)
22 3l9o_A ATP-dependent RNA helic 100.0 9.2E-47 3.1E-51 389.4 25.3 342 46-404 162-606 (1108)
23 2zj8_A DNA helicase, putative 100.0 1.3E-46 4.4E-51 378.6 25.7 335 47-396 2-388 (720)
24 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-46 8.5E-51 367.9 27.1 328 66-397 5-510 (556)
25 2va8_A SSO2462, SKI2-type heli 100.0 8.5E-46 2.9E-50 372.9 30.8 337 45-397 7-410 (715)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-46 6.1E-51 376.6 23.3 334 47-396 2-389 (702)
27 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-45 4.3E-50 378.4 28.8 330 64-397 244-751 (936)
28 1wp9_A ATP-dependent RNA helic 100.0 3.4E-45 1.2E-49 354.3 29.8 324 68-399 9-479 (494)
29 2xgj_A ATP-dependent RNA helic 100.0 3.5E-44 1.2E-48 367.2 33.3 320 63-403 82-507 (1010)
30 4ddu_A Reverse gyrase; topoiso 100.0 1.1E-44 3.9E-49 373.7 26.8 320 64-409 75-503 (1104)
31 1tf5_A Preprotein translocase 100.0 6.5E-43 2.2E-47 340.4 30.1 323 63-397 79-547 (844)
32 4gl2_A Interferon-induced heli 100.0 1E-44 3.5E-49 365.3 17.0 321 68-393 7-517 (699)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-43 6.2E-48 365.2 18.9 324 59-410 48-468 (1054)
34 4a4z_A Antiviral helicase SKI2 100.0 2.6E-42 9E-47 353.4 26.7 311 65-393 37-490 (997)
35 1gm5_A RECG; helicase, replica 100.0 1.3E-42 4.3E-47 345.0 19.0 318 55-394 356-696 (780)
36 2eyq_A TRCF, transcription-rep 100.0 7.7E-41 2.6E-45 347.5 33.1 323 51-395 586-922 (1151)
37 2oca_A DAR protein, ATP-depend 100.0 5.1E-42 1.7E-46 333.0 21.0 310 67-393 112-453 (510)
38 2fsf_A Preprotein translocase 100.0 1.2E-40 4E-45 323.6 29.2 321 65-397 72-585 (853)
39 1nkt_A Preprotein translocase 100.0 8.5E-40 2.9E-44 317.9 32.5 322 64-397 108-619 (922)
40 4f92_B U5 small nuclear ribonu 100.0 9.4E-41 3.2E-45 356.1 28.3 338 53-399 911-1312(1724)
41 2fwr_A DNA repair protein RAD2 100.0 2.5E-41 8.5E-46 325.0 15.2 296 68-398 93-457 (472)
42 4f92_B U5 small nuclear ribonu 100.0 1.6E-40 5.6E-45 354.2 22.8 331 65-405 76-483 (1724)
43 2whx_A Serine protease/ntpase/ 100.0 2.9E-41 9.8E-46 329.7 13.2 316 51-409 155-494 (618)
44 2jlq_A Serine protease subunit 100.0 1.7E-40 5.8E-45 315.3 17.7 287 65-394 1-310 (451)
45 3o8b_A HCV NS3 protease/helica 100.0 1.4E-39 4.8E-44 314.6 21.3 277 68-397 217-516 (666)
46 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-39 4E-44 326.1 19.7 333 45-395 71-443 (773)
47 1yks_A Genome polyprotein [con 100.0 2.2E-41 7.5E-46 319.8 2.6 289 79-409 4-315 (440)
48 2wv9_A Flavivirin protease NS2 100.0 5.9E-40 2E-44 322.2 12.2 307 60-408 202-548 (673)
49 3h1t_A Type I site-specific re 100.0 3.6E-38 1.2E-42 310.8 18.6 309 68-394 178-557 (590)
50 1t6n_A Probable ATP-dependent 100.0 2.9E-37 9.9E-42 265.9 21.8 215 36-250 4-218 (220)
51 3dmq_A RNA polymerase-associat 100.0 1E-37 3.6E-42 320.2 20.4 318 68-391 153-609 (968)
52 1z63_A Helicase of the SNF2/RA 100.0 2.6E-37 8.9E-42 299.2 21.3 309 68-394 37-452 (500)
53 2z83_A Helicase/nucleoside tri 100.0 5.7E-38 2E-42 298.3 16.3 278 77-395 15-313 (459)
54 2v6i_A RNA helicase; membrane, 100.0 2.9E-37 9.9E-42 291.1 17.6 268 83-392 2-288 (431)
55 1vec_A ATP-dependent RNA helic 100.0 6.9E-36 2.3E-40 254.7 23.2 203 46-250 3-205 (206)
56 3fmo_B ATP-dependent RNA helic 100.0 3.6E-36 1.2E-40 269.9 22.0 205 45-253 91-298 (300)
57 3mwy_W Chromo domain-containin 100.0 7E-36 2.4E-40 302.5 26.5 334 68-411 236-701 (800)
58 3fe2_A Probable ATP-dependent 100.0 5.4E-36 1.9E-40 261.5 22.1 210 42-254 25-239 (242)
59 2oxc_A Probable ATP-dependent 100.0 9.9E-36 3.4E-40 257.8 21.7 207 43-251 21-227 (230)
60 3bor_A Human initiation factor 100.0 8.6E-36 2.9E-40 259.3 19.4 206 45-252 29-234 (237)
61 3ber_A Probable ATP-dependent 100.0 1.5E-35 5E-40 259.2 20.6 205 45-252 42-247 (249)
62 1z3i_X Similar to RAD54-like; 100.0 7.9E-34 2.7E-38 280.6 34.0 333 68-409 55-543 (644)
63 1q0u_A Bstdead; DEAD protein, 100.0 1.5E-35 5.2E-40 254.8 19.0 207 46-254 4-213 (219)
64 3iuy_A Probable ATP-dependent 100.0 1.9E-35 6.5E-40 255.9 19.5 207 41-251 14-227 (228)
65 1qde_A EIF4A, translation init 100.0 3.8E-35 1.3E-39 253.5 20.9 207 44-254 12-218 (224)
66 3rc3_A ATP-dependent RNA helic 100.0 1.1E-34 3.6E-39 284.1 24.1 294 54-393 130-443 (677)
67 2gxq_A Heat resistant RNA depe 100.0 3.5E-34 1.2E-38 244.4 21.7 201 47-252 2-205 (207)
68 3ly5_A ATP-dependent RNA helic 100.0 2.4E-34 8.3E-39 253.5 19.1 202 44-248 50-258 (262)
69 3jux_A Protein translocase sub 100.0 1.4E-32 4.8E-37 261.8 32.3 318 65-397 73-589 (822)
70 2pl3_A Probable ATP-dependent 100.0 8.7E-34 3E-38 246.8 20.5 205 45-253 24-233 (236)
71 1wrb_A DJVLGB; RNA helicase, D 100.0 4.2E-34 1.4E-38 251.5 17.7 208 45-255 22-242 (253)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.4E-33 8.2E-38 285.6 23.7 325 68-409 271-721 (1038)
73 3dkp_A Probable ATP-dependent 100.0 1.4E-33 4.7E-38 247.0 16.7 209 45-254 24-242 (245)
74 2ipc_A Preprotein translocase 100.0 6.7E-28 2.3E-32 234.0 30.3 318 64-397 76-700 (997)
75 1t5i_A C_terminal domain of A 100.0 2.8E-28 9.7E-33 200.2 15.4 155 261-415 4-158 (172)
76 2hjv_A ATP-dependent RNA helic 100.0 1.5E-27 5.3E-32 194.3 19.5 154 260-414 7-160 (163)
77 1c4o_A DNA nucleotide excision 100.0 2.2E-26 7.4E-31 227.2 29.5 117 287-405 438-559 (664)
78 2p6n_A ATP-dependent RNA helic 100.0 2.4E-27 8E-32 197.6 15.8 169 243-413 11-179 (191)
79 1fuk_A Eukaryotic initiation f 99.9 1.1E-26 3.6E-31 189.8 19.2 152 262-414 3-155 (165)
80 2d7d_A Uvrabc system protein B 99.9 6.8E-26 2.3E-30 223.5 27.2 117 287-405 444-565 (661)
81 2rb4_A ATP-dependent RNA helic 99.9 9.9E-27 3.4E-31 192.0 17.7 154 260-414 5-165 (175)
82 3eaq_A Heat resistant RNA depe 99.9 2.7E-26 9.3E-31 195.0 16.8 148 265-413 8-155 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.2E-26 7.7E-31 191.0 15.8 153 259-412 16-169 (185)
84 3i32_A Heat resistant RNA depe 99.9 2.3E-25 7.9E-30 197.8 17.1 150 263-413 3-152 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 7E-27 2.4E-31 191.8 0.0 149 264-413 5-154 (170)
86 3b6e_A Interferon-induced heli 99.9 1.2E-24 4E-29 186.6 8.1 164 65-231 30-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.4E-23 4.7E-28 203.3 16.3 103 287-395 383-521 (540)
88 3crv_A XPD/RAD3 related DNA he 99.9 1.2E-20 4.2E-25 183.3 30.4 313 68-398 3-534 (551)
89 1rif_A DAR protein, DNA helica 99.9 7.7E-23 2.7E-27 182.3 8.7 154 68-236 113-266 (282)
90 3llm_A ATP-dependent RNA helic 99.9 3.2E-22 1.1E-26 173.2 11.9 161 65-236 58-222 (235)
91 2fz4_A DNA repair protein RAD2 99.8 5.5E-20 1.9E-24 158.8 14.9 138 68-235 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1.9E-19 6.5E-24 176.1 20.3 113 279-396 440-585 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 3.9E-20 1.3E-24 162.4 13.9 138 271-408 93-238 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.1E-08 3.9E-13 100.0 11.1 146 70-231 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 1.4E-07 4.7E-12 93.4 6.2 67 68-137 189-256 (646)
96 3lfu_A DNA helicase II; SF1 he 98.5 1.9E-05 6.4E-10 78.5 21.5 82 67-150 8-91 (647)
97 3hgt_A HDA1 complex subunit 3; 98.4 4.3E-06 1.5E-10 73.4 13.1 132 272-408 107-250 (328)
98 2gk6_A Regulator of nonsense t 98.4 3.6E-06 1.2E-10 82.8 13.6 69 67-137 179-247 (624)
99 2xzl_A ATP-dependent helicase 98.3 5.9E-06 2E-10 83.2 12.8 69 67-137 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.3 9.5E-06 3.2E-10 81.6 14.0 68 68-137 356-423 (800)
101 3upu_A ATP-dependent DNA helic 98.3 3E-06 1E-10 80.3 9.8 69 64-134 21-94 (459)
102 3e1s_A Exodeoxyribonuclease V, 98.2 4.5E-06 1.6E-10 80.8 10.3 127 68-231 189-315 (574)
103 2o0j_A Terminase, DNA packagin 97.7 0.00046 1.6E-08 62.9 12.2 74 68-142 163-236 (385)
104 3cpe_A Terminase, DNA packagin 97.5 0.00099 3.4E-08 65.0 13.7 74 68-142 163-236 (592)
105 3vkw_A Replicase large subunit 97.3 0.00097 3.3E-08 61.5 9.8 108 84-231 162-269 (446)
106 1uaa_A REP helicase, protein ( 97.1 0.00035 1.2E-08 69.5 5.0 82 68-151 2-86 (673)
107 2orw_A Thymidine kinase; TMTK, 97.1 0.0014 4.7E-08 53.4 7.4 39 83-124 3-41 (184)
108 1pjr_A PCRA; DNA repair, DNA r 97.0 0.00077 2.6E-08 67.5 6.3 83 67-151 10-94 (724)
109 2j9r_A Thymidine kinase; TK1, 97.0 0.00082 2.8E-08 55.5 4.9 40 83-125 28-67 (214)
110 2b8t_A Thymidine kinase; deoxy 96.9 0.00071 2.4E-08 56.7 4.6 91 83-203 12-102 (223)
111 3ec2_A DNA replication protein 96.9 0.0013 4.4E-08 53.4 6.1 18 83-100 38-55 (180)
112 1a5t_A Delta prime, HOLB; zinc 96.8 0.0041 1.4E-07 56.0 8.7 34 69-102 3-43 (334)
113 1xx6_A Thymidine kinase; NESG, 96.8 0.0024 8.2E-08 52.1 6.4 39 83-124 8-46 (191)
114 3u4q_A ATP-dependent helicase/ 96.8 0.0016 5.5E-08 69.2 6.6 69 68-138 10-81 (1232)
115 2orv_A Thymidine kinase; TP4A 96.7 0.0021 7E-08 53.6 5.2 40 83-125 19-58 (234)
116 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0014 4.9E-08 53.9 3.9 40 83-125 28-67 (219)
117 3te6_A Regulatory protein SIR3 96.6 0.019 6.3E-07 50.9 11.2 19 83-101 45-63 (318)
118 2zpa_A Uncharacterized protein 96.6 0.0051 1.8E-07 59.8 7.9 112 68-232 175-288 (671)
119 3bos_A Putative DNA replicatio 96.5 0.0021 7.1E-08 54.7 4.2 19 82-100 51-69 (242)
120 1l8q_A Chromosomal replication 96.4 0.012 4.2E-07 52.5 9.0 18 83-100 37-54 (324)
121 2chg_A Replication factor C sm 96.3 0.017 5.8E-07 48.1 9.1 40 189-230 101-140 (226)
122 1w4r_A Thymidine kinase; type 96.3 0.0049 1.7E-07 50.0 5.3 38 83-123 20-57 (195)
123 3kl4_A SRP54, signal recogniti 96.1 0.028 9.6E-07 52.0 9.8 56 189-244 178-235 (433)
124 2z4s_A Chromosomal replication 96.1 0.032 1.1E-06 52.2 10.2 18 83-100 130-147 (440)
125 3u61_B DNA polymerase accessor 96.0 0.041 1.4E-06 49.1 10.6 39 190-229 105-143 (324)
126 2kjq_A DNAA-related protein; s 96.0 0.0072 2.5E-07 47.2 4.7 19 82-100 35-53 (149)
127 3eie_A Vacuolar protein sortin 95.9 0.019 6.4E-07 51.3 7.8 55 43-100 12-68 (322)
128 3n70_A Transport activator; si 95.9 0.023 7.9E-07 44.0 7.1 38 192-231 78-115 (145)
129 1sxj_E Activator 1 40 kDa subu 95.5 0.16 5.3E-06 45.9 12.4 43 189-233 133-175 (354)
130 3h4m_A Proteasome-activating n 95.5 0.066 2.3E-06 46.7 9.3 53 45-100 13-68 (285)
131 3syl_A Protein CBBX; photosynt 95.4 0.026 9E-07 49.9 6.7 18 83-100 67-84 (309)
132 2gno_A DNA polymerase III, gam 95.4 0.054 1.8E-06 47.8 8.4 39 189-229 81-119 (305)
133 2v1u_A Cell division control p 95.2 0.044 1.5E-06 50.1 7.7 18 83-100 44-61 (387)
134 1d2n_A N-ethylmaleimide-sensit 95.2 0.16 5.6E-06 43.8 10.8 18 84-101 65-82 (272)
135 3dm5_A SRP54, signal recogniti 95.1 0.2 6.8E-06 46.4 11.4 55 190-244 182-236 (443)
136 2w58_A DNAI, primosome compone 95.0 0.082 2.8E-06 43.4 8.0 18 84-101 55-72 (202)
137 2qby_B CDC6 homolog 3, cell di 94.8 0.093 3.2E-06 47.9 8.6 18 83-100 45-62 (384)
138 1sxj_D Activator 1 41 kDa subu 94.8 0.035 1.2E-06 50.2 5.6 40 189-230 132-171 (353)
139 2dr3_A UPF0273 protein PH0284; 94.6 0.16 5.5E-06 43.0 9.1 50 82-135 22-71 (247)
140 1fnn_A CDC6P, cell division co 94.5 0.048 1.6E-06 49.9 6.0 16 85-100 46-61 (389)
141 1iqp_A RFCS; clamp loader, ext 94.5 0.074 2.5E-06 47.3 7.0 40 189-230 109-148 (327)
142 1gm5_A RECG; helicase, replica 94.2 0.11 3.9E-06 52.0 8.2 78 287-364 416-498 (780)
143 3pfi_A Holliday junction ATP-d 94.2 0.39 1.4E-05 42.8 11.2 49 44-100 24-72 (338)
144 2qby_A CDC6 homolog 1, cell di 94.1 0.061 2.1E-06 49.1 5.7 18 83-100 45-62 (386)
145 1hqc_A RUVB; extended AAA-ATPa 94.1 0.77 2.6E-05 40.6 12.8 48 45-100 8-55 (324)
146 1sxj_C Activator 1 40 kDa subu 93.9 0.13 4.5E-06 46.1 7.4 39 189-229 109-147 (340)
147 1jr3_A DNA polymerase III subu 93.8 0.41 1.4E-05 43.3 10.6 40 189-230 118-157 (373)
148 2chq_A Replication factor C sm 93.5 0.088 3E-06 46.6 5.5 44 44-100 12-55 (319)
149 3pvs_A Replication-associated 93.5 0.099 3.4E-06 48.8 5.9 17 84-100 51-67 (447)
150 1njg_A DNA polymerase III subu 93.5 0.33 1.1E-05 40.6 8.8 39 190-230 126-164 (250)
151 1sxj_B Activator 1 37 kDa subu 93.4 0.085 2.9E-06 46.8 5.2 39 190-230 107-145 (323)
152 2rb4_A ATP-dependent RNA helic 93.2 0.35 1.2E-05 38.5 8.0 72 116-198 36-110 (175)
153 2p6n_A ATP-dependent RNA helic 93.0 0.84 2.9E-05 36.9 10.2 73 116-199 56-131 (191)
154 3hjh_A Transcription-repair-co 92.9 0.5 1.7E-05 44.5 9.6 75 277-364 372-446 (483)
155 3oiy_A Reverse gyrase helicase 92.8 0.28 9.7E-06 45.2 7.9 77 287-363 63-146 (414)
156 2q6t_A DNAB replication FORK h 92.7 0.18 6.1E-06 47.1 6.5 50 82-134 199-248 (444)
157 1sxj_A Activator 1 95 kDa subu 92.7 0.25 8.7E-06 47.1 7.5 43 189-233 147-190 (516)
158 2r6a_A DNAB helicase, replicat 92.6 0.21 7E-06 46.9 6.6 39 82-122 202-240 (454)
159 4b4t_M 26S protease regulatory 92.5 0.057 1.9E-06 49.9 2.6 54 44-100 176-232 (434)
160 1g5t_A COB(I)alamin adenosyltr 92.4 1.8 6.1E-05 35.0 11.0 141 83-239 28-170 (196)
161 2i1q_A DNA repair and recombin 92.3 0.31 1E-05 43.3 7.2 55 83-137 98-166 (322)
162 1fuk_A Eukaryotic initiation f 92.0 1.4 4.8E-05 34.5 10.1 88 96-199 17-107 (165)
163 3hu3_A Transitional endoplasmi 91.8 0.41 1.4E-05 45.2 7.7 18 83-100 238-255 (489)
164 2jgn_A DBX, DDX3, ATP-dependen 91.8 0.61 2.1E-05 37.5 7.8 90 94-198 30-122 (185)
165 1t5i_A C_terminal domain of A 91.6 2.4 8.1E-05 33.4 11.0 91 94-200 16-109 (172)
166 2fna_A Conserved hypothetical 91.5 4 0.00014 36.2 13.8 37 192-229 139-177 (357)
167 4b4t_J 26S protease regulatory 91.3 0.077 2.7E-06 48.3 2.0 54 44-100 143-199 (405)
168 2hjv_A ATP-dependent RNA helic 90.9 4.6 0.00016 31.4 13.4 73 116-199 37-112 (163)
169 2px0_A Flagellar biosynthesis 90.8 0.55 1.9E-05 41.1 7.0 21 82-102 104-124 (296)
170 3eaq_A Heat resistant RNA depe 90.7 1.2 3.9E-05 36.8 8.6 70 116-196 33-105 (212)
171 3i5x_A ATP-dependent RNA helic 90.0 1.8 6.3E-05 41.6 10.7 77 115-199 340-419 (563)
172 2d7d_A Uvrabc system protein B 90.0 6.4 0.00022 38.7 14.6 92 116-218 447-541 (661)
173 1w5s_A Origin recognition comp 90.0 0.42 1.4E-05 43.9 5.9 17 84-100 51-69 (412)
174 4a1f_A DNAB helicase, replicat 89.9 0.2 6.7E-06 44.7 3.4 50 81-134 44-93 (338)
175 2eyq_A TRCF, transcription-rep 89.8 1.1 3.6E-05 47.4 9.2 76 287-362 651-731 (1151)
176 3cf2_A TER ATPase, transitiona 89.7 0.72 2.5E-05 46.2 7.5 53 45-100 200-255 (806)
177 3co5_A Putative two-component 89.7 0.13 4.5E-06 39.5 1.8 18 82-99 26-43 (143)
178 3cmu_A Protein RECA, recombina 89.4 0.42 1.4E-05 52.6 5.9 40 83-125 1427-1466(2050)
179 4b4t_L 26S protease subunit RP 89.3 0.13 4.6E-06 47.5 1.9 54 44-100 176-232 (437)
180 2i4i_A ATP-dependent RNA helic 89.3 2.8 9.7E-05 38.3 11.0 71 115-196 277-350 (417)
181 3sqw_A ATP-dependent RNA helic 88.4 6.7 0.00023 37.8 13.4 78 115-200 289-369 (579)
182 4ddu_A Reverse gyrase; topoiso 88.3 0.9 3.1E-05 47.6 7.4 78 287-364 120-204 (1104)
183 1xwi_A SKD1 protein; VPS4B, AA 88.1 0.22 7.7E-06 44.2 2.5 53 44-100 7-62 (322)
184 1t6n_A Probable ATP-dependent 88.1 0.7 2.4E-05 38.2 5.4 71 289-362 83-164 (220)
185 1oyw_A RECQ helicase, ATP-depe 88.1 1.1 3.7E-05 42.8 7.3 59 288-346 65-123 (523)
186 3cf0_A Transitional endoplasmi 87.9 0.17 5.9E-06 44.5 1.5 55 43-100 9-66 (301)
187 4b4t_K 26S protease regulatory 87.8 0.2 6.9E-06 46.2 2.0 53 45-100 168-223 (428)
188 3ber_A Probable ATP-dependent 87.7 3.4 0.00012 34.8 9.6 115 288-409 111-240 (249)
189 3pey_A ATP-dependent RNA helic 87.7 8.2 0.00028 34.7 12.9 76 115-201 244-322 (395)
190 3b9p_A CG5977-PA, isoform A; A 87.3 0.36 1.2E-05 42.2 3.3 53 45-100 17-71 (297)
191 4b4t_I 26S protease regulatory 87.1 0.3 1E-05 44.8 2.6 54 44-100 177-233 (437)
192 3lda_A DNA repair protein RAD5 87.0 1.4 4.8E-05 40.3 7.1 40 84-123 179-221 (400)
193 2v1x_A ATP-dependent DNA helic 86.9 1.8 6.3E-05 41.9 8.2 60 287-346 83-144 (591)
194 3io5_A Recombination and repai 86.6 0.57 2E-05 41.1 4.0 42 85-127 30-71 (333)
195 2qz4_A Paraplegin; AAA+, SPG7, 86.6 0.39 1.3E-05 41.0 3.0 51 47-100 4-56 (262)
196 1c4o_A DNA nucleotide excision 86.5 12 0.0004 36.9 13.8 92 116-218 441-535 (664)
197 2qp9_X Vacuolar protein sortin 86.2 0.24 8.2E-06 44.7 1.5 53 45-101 47-102 (355)
198 1p9r_A General secretion pathw 86.1 0.63 2.2E-05 42.9 4.3 37 73-110 155-193 (418)
199 2z43_A DNA repair and recombin 86.1 1.2 4.1E-05 39.5 6.1 54 83-136 107-164 (324)
200 1ls1_A Signal recognition part 86.0 9.8 0.00034 33.0 11.8 21 82-102 97-117 (295)
201 1e9r_A Conjugal transfer prote 85.8 0.67 2.3E-05 43.1 4.5 44 82-128 52-95 (437)
202 4b4t_H 26S protease regulatory 85.8 0.27 9.3E-06 45.5 1.7 54 44-100 204-260 (467)
203 2qor_A Guanylate kinase; phosp 85.7 0.37 1.3E-05 39.5 2.3 22 79-100 8-29 (204)
204 2zan_A Vacuolar protein sortin 85.6 0.44 1.5E-05 44.4 3.1 53 45-101 130-185 (444)
205 2oap_1 GSPE-2, type II secreti 85.4 0.72 2.5E-05 43.8 4.4 48 58-108 236-284 (511)
206 2qgz_A Helicase loader, putati 85.2 0.56 1.9E-05 41.3 3.4 19 83-101 152-170 (308)
207 2qmh_A HPR kinase/phosphorylas 85.1 0.48 1.6E-05 38.4 2.6 20 82-101 33-52 (205)
208 2l82_A Designed protein OR32; 85.0 4.5 0.00015 28.3 7.1 50 291-340 5-54 (162)
209 3iij_A Coilin-interacting nucl 84.9 0.44 1.5E-05 38.0 2.4 21 81-101 9-29 (180)
210 3b85_A Phosphate starvation-in 84.9 0.62 2.1E-05 38.3 3.3 32 69-100 8-39 (208)
211 3e70_C DPA, signal recognition 84.8 11 0.00039 33.2 11.7 54 191-244 212-265 (328)
212 2zts_A Putative uncharacterize 84.5 0.37 1.3E-05 40.7 1.9 50 83-135 30-79 (251)
213 3i32_A Heat resistant RNA depe 84.5 2.6 8.8E-05 36.8 7.3 73 116-199 30-105 (300)
214 3fe2_A Probable ATP-dependent 84.4 4.2 0.00014 34.0 8.5 115 288-409 102-230 (242)
215 2gza_A Type IV secretion syste 84.3 0.86 2.9E-05 41.1 4.3 19 81-99 173-191 (361)
216 1kgd_A CASK, peripheral plasma 84.0 0.63 2.2E-05 37.2 2.9 19 82-100 4-22 (180)
217 2yjt_D ATP-dependent RNA helic 84.3 0.21 7.2E-06 39.6 0.0 73 115-198 31-106 (170)
218 1qhx_A CPT, protein (chloramph 83.8 0.5 1.7E-05 37.5 2.3 18 83-100 3-20 (178)
219 1w36_B RECB, exodeoxyribonucle 83.8 1.4 4.7E-05 46.7 6.1 55 84-138 17-80 (1180)
220 1xti_A Probable ATP-dependent 83.6 9.8 0.00034 34.2 11.3 74 116-200 252-328 (391)
221 3a8t_A Adenylate isopentenyltr 83.6 0.55 1.9E-05 41.7 2.5 19 84-102 41-59 (339)
222 1vec_A ATP-dependent RNA helic 83.6 3.1 0.00011 33.6 7.2 118 288-409 71-200 (206)
223 1jbk_A CLPB protein; beta barr 83.5 0.49 1.7E-05 37.8 2.1 18 83-100 43-60 (195)
224 2pt7_A CAG-ALFA; ATPase, prote 83.3 0.96 3.3E-05 40.2 4.1 18 82-99 170-187 (330)
225 3trf_A Shikimate kinase, SK; a 83.3 0.51 1.7E-05 37.8 2.1 19 83-101 5-23 (185)
226 2v3c_C SRP54, signal recogniti 83.1 1.1 3.9E-05 41.3 4.7 19 84-102 100-118 (432)
227 3cf2_A TER ATPase, transitiona 83.1 1.7 5.8E-05 43.6 6.1 57 41-100 469-528 (806)
228 3vaa_A Shikimate kinase, SK; s 83.0 0.7 2.4E-05 37.6 2.9 20 82-101 24-43 (199)
229 2eyu_A Twitching motility prot 82.9 0.66 2.3E-05 39.7 2.8 21 80-100 22-42 (261)
230 2x8a_A Nuclear valosin-contain 82.9 0.23 8E-06 42.9 -0.1 54 44-100 5-61 (274)
231 3bh0_A DNAB-like replicative h 82.8 1.3 4.3E-05 39.2 4.7 51 82-136 67-117 (315)
232 3nwn_A Kinesin-like protein KI 82.8 0.48 1.6E-05 42.6 1.9 25 76-100 96-122 (359)
233 2gxq_A Heat resistant RNA depe 82.7 2.8 9.7E-05 33.9 6.6 71 288-362 72-150 (207)
234 1f9v_A Kinesin-like protein KA 82.7 0.65 2.2E-05 41.5 2.7 25 76-100 76-102 (347)
235 3lw7_A Adenylate kinase relate 82.6 0.52 1.8E-05 37.2 1.9 17 85-101 3-19 (179)
236 2ffh_A Protein (FFH); SRP54, s 82.6 21 0.00072 32.7 12.8 21 82-102 97-117 (425)
237 1zp6_A Hypothetical protein AT 82.6 0.52 1.8E-05 38.0 1.9 20 81-100 7-26 (191)
238 3fht_A ATP-dependent RNA helic 82.5 4.8 0.00016 36.6 8.7 72 116-198 268-342 (412)
239 3t0q_A AGR253WP; kinesin, alph 82.4 0.66 2.2E-05 41.5 2.6 25 76-100 77-103 (349)
240 2db3_A ATP-dependent RNA helic 82.4 5 0.00017 37.1 8.8 72 116-198 302-376 (434)
241 3exa_A TRNA delta(2)-isopenten 82.4 0.65 2.2E-05 40.7 2.5 18 85-102 5-22 (322)
242 3d8b_A Fidgetin-like protein 1 82.2 0.74 2.5E-05 41.5 3.0 54 45-101 80-135 (357)
243 3uk6_A RUVB-like 2; hexameric 82.1 1.5 5.1E-05 39.5 5.0 19 83-101 70-88 (368)
244 4ag6_A VIRB4 ATPase, type IV s 82.0 1.2 4.1E-05 40.7 4.4 42 81-125 33-74 (392)
245 3foz_A TRNA delta(2)-isopenten 81.9 0.71 2.4E-05 40.4 2.5 18 85-102 12-29 (316)
246 2j0s_A ATP-dependent RNA helic 81.8 4.8 0.00017 36.6 8.5 72 116-198 278-352 (410)
247 2oca_A DAR protein, ATP-depend 81.7 19 0.00064 33.9 12.8 75 116-200 349-426 (510)
248 1lvg_A Guanylate kinase, GMP k 81.6 0.63 2.2E-05 37.9 2.1 19 82-100 3-21 (198)
249 3vkg_A Dynein heavy chain, cyt 81.5 2.2 7.5E-05 49.4 6.8 69 55-124 875-947 (3245)
250 2p65_A Hypothetical protein PF 81.5 0.62 2.1E-05 37.0 2.0 19 83-101 43-61 (187)
251 2w0m_A SSO2452; RECA, SSPF, un 81.4 0.81 2.8E-05 38.0 2.8 23 80-102 20-42 (235)
252 1bg2_A Kinesin; motor protein, 81.3 0.59 2E-05 41.4 1.9 25 76-100 69-95 (325)
253 1n0w_A DNA repair protein RAD5 81.3 1.8 6.1E-05 36.2 4.9 25 81-105 22-46 (243)
254 1s2m_A Putative ATP-dependent 81.3 5.7 0.00019 36.0 8.7 72 116-198 260-334 (400)
255 2ius_A DNA translocase FTSK; n 81.2 1.6 5.5E-05 41.2 4.9 20 81-100 165-184 (512)
256 1y63_A LMAJ004144AAA protein; 81.2 0.72 2.5E-05 37.0 2.3 19 82-100 9-27 (184)
257 3tau_A Guanylate kinase, GMP k 81.1 0.89 3.1E-05 37.3 2.9 18 83-100 8-25 (208)
258 2cvh_A DNA repair and recombin 81.1 1.1 3.6E-05 36.9 3.4 36 81-122 18-53 (220)
259 2ze6_A Isopentenyl transferase 81.0 0.78 2.7E-05 39.0 2.5 16 86-101 4-19 (253)
260 2j41_A Guanylate kinase; GMP, 81.0 0.73 2.5E-05 37.6 2.3 20 81-100 4-23 (207)
261 3bfn_A Kinesin-like protein KI 80.9 0.73 2.5E-05 41.7 2.4 23 78-100 92-116 (388)
262 3u4q_B ATP-dependent helicase/ 80.9 0.68 2.3E-05 49.1 2.5 49 86-135 4-52 (1166)
263 3vfd_A Spastin; ATPase, microt 80.9 0.86 2.9E-05 41.6 3.0 19 83-101 148-166 (389)
264 2l8b_A Protein TRAI, DNA helic 80.9 0.3 1E-05 38.8 -0.1 57 71-129 37-95 (189)
265 1v8k_A Kinesin-like protein KI 80.9 0.64 2.2E-05 42.4 2.0 24 77-100 147-172 (410)
266 3iuy_A Probable ATP-dependent 80.8 4.7 0.00016 33.2 7.3 72 287-362 93-173 (228)
267 2j37_W Signal recognition part 80.6 5.3 0.00018 37.7 8.2 18 85-102 103-120 (504)
268 1kag_A SKI, shikimate kinase I 80.6 0.78 2.7E-05 36.1 2.3 18 83-100 4-21 (173)
269 1hv8_A Putative ATP-dependent 80.6 6.3 0.00021 35.1 8.6 73 116-199 240-315 (367)
270 1goj_A Kinesin, kinesin heavy 80.3 0.71 2.4E-05 41.4 2.1 24 77-100 73-98 (355)
271 3dc4_A Kinesin-like protein NO 80.3 0.59 2E-05 41.7 1.5 24 77-100 87-112 (344)
272 1wrb_A DJVLGB; RNA helicase, D 80.2 12 0.00041 31.3 9.9 118 288-409 100-232 (253)
273 3lre_A Kinesin-like protein KI 80.2 0.72 2.5E-05 41.4 2.1 25 76-100 97-123 (355)
274 1kht_A Adenylate kinase; phosp 80.2 0.76 2.6E-05 36.8 2.1 18 83-100 3-20 (192)
275 3kb2_A SPBC2 prophage-derived 80.1 0.71 2.4E-05 36.3 1.9 17 85-101 3-19 (173)
276 4etp_A Kinesin-like protein KA 80.0 0.69 2.4E-05 42.3 1.9 25 76-100 132-158 (403)
277 3b6u_A Kinesin-like protein KI 80.0 0.69 2.4E-05 41.7 1.9 25 76-100 93-119 (372)
278 2vvg_A Kinesin-2; motor protei 80.0 0.69 2.4E-05 41.3 1.9 24 77-100 82-107 (350)
279 3hr8_A Protein RECA; alpha and 80.0 1.1 3.6E-05 40.3 3.1 41 83-126 61-101 (356)
280 2h58_A Kinesin-like protein KI 79.9 0.7 2.4E-05 41.0 1.9 26 75-100 71-98 (330)
281 3cm0_A Adenylate kinase; ATP-b 79.9 0.62 2.1E-05 37.3 1.5 19 83-101 4-22 (186)
282 1t5c_A CENP-E protein, centrom 79.8 0.71 2.4E-05 41.3 1.9 25 76-100 69-95 (349)
283 2y65_A Kinesin, kinesin heavy 79.7 0.71 2.4E-05 41.5 1.9 25 76-100 76-102 (365)
284 3nbx_X ATPase RAVA; AAA+ ATPas 79.6 0.6 2.1E-05 44.1 1.5 25 76-100 34-58 (500)
285 3tr0_A Guanylate kinase, GMP k 79.6 1.1 3.8E-05 36.4 2.9 19 82-100 6-24 (205)
286 1ly1_A Polynucleotide kinase; 79.6 0.76 2.6E-05 36.4 1.9 16 85-100 4-19 (181)
287 1x88_A Kinesin-like protein KI 79.6 0.71 2.4E-05 41.5 1.8 25 76-100 80-106 (359)
288 3t15_A Ribulose bisphosphate c 79.5 0.87 3E-05 39.7 2.4 18 83-100 36-53 (293)
289 2bjv_A PSP operon transcriptio 79.5 0.85 2.9E-05 39.0 2.3 19 82-100 28-46 (265)
290 1lv7_A FTSH; alpha/beta domain 79.5 0.77 2.6E-05 39.1 2.0 53 45-100 8-62 (257)
291 2nr8_A Kinesin-like protein KI 79.5 0.73 2.5E-05 41.3 1.9 25 76-100 95-121 (358)
292 3gbj_A KIF13B protein; kinesin 79.4 0.73 2.5E-05 41.3 1.9 25 76-100 84-110 (354)
293 4a14_A Kinesin, kinesin-like p 79.4 0.74 2.5E-05 41.1 1.9 25 76-100 75-101 (344)
294 3hws_A ATP-dependent CLP prote 79.3 0.8 2.7E-05 41.3 2.2 19 82-100 50-68 (363)
295 3ney_A 55 kDa erythrocyte memb 79.3 1.2 4.1E-05 36.2 2.9 19 82-100 18-36 (197)
296 1v5w_A DMC1, meiotic recombina 79.3 2.1 7.1E-05 38.3 4.9 41 84-124 123-166 (343)
297 2zr9_A Protein RECA, recombina 79.3 1.3 4.5E-05 39.7 3.5 39 82-123 60-98 (349)
298 1nlf_A Regulatory protein REPA 79.2 2.8 9.7E-05 36.0 5.6 28 77-104 24-51 (279)
299 2zfi_A Kinesin-like protein KI 79.2 0.75 2.6E-05 41.4 1.9 25 76-100 81-107 (366)
300 3cob_A Kinesin heavy chain-lik 79.2 0.72 2.5E-05 41.6 1.8 25 76-100 71-97 (369)
301 2rep_A Kinesin-like protein KI 79.0 0.9 3.1E-05 41.0 2.3 25 76-100 107-133 (376)
302 3crm_A TRNA delta(2)-isopenten 78.8 1 3.5E-05 39.8 2.5 18 85-102 7-24 (323)
303 1ixz_A ATP-dependent metallopr 78.6 0.71 2.4E-05 39.2 1.5 53 45-100 12-66 (254)
304 3a00_A Guanylate kinase, GMP k 78.5 0.95 3.2E-05 36.3 2.2 17 84-100 2-18 (186)
305 2heh_A KIF2C protein; kinesin, 78.5 0.8 2.7E-05 41.5 1.8 25 76-100 126-152 (387)
306 3ly5_A ATP-dependent RNA helic 78.5 8.5 0.00029 32.6 8.3 72 287-362 125-207 (262)
307 4gp7_A Metallophosphoesterase; 78.5 0.87 3E-05 36.0 1.9 19 82-100 8-26 (171)
308 1ofh_A ATP-dependent HSL prote 78.5 0.9 3.1E-05 39.8 2.2 18 83-100 50-67 (310)
309 1u0j_A DNA replication protein 78.4 2.3 7.8E-05 36.3 4.5 43 56-101 74-122 (267)
310 2qt1_A Nicotinamide riboside k 78.3 0.88 3E-05 37.2 2.0 24 77-100 15-38 (207)
311 1tue_A Replication protein E1; 78.2 0.95 3.2E-05 36.9 2.0 17 84-100 59-75 (212)
312 2oxc_A Probable ATP-dependent 78.2 4.4 0.00015 33.6 6.3 70 288-362 92-172 (230)
313 2v54_A DTMP kinase, thymidylat 78.0 1 3.6E-05 36.5 2.3 20 82-101 3-22 (204)
314 1s96_A Guanylate kinase, GMP k 77.9 1 3.5E-05 37.3 2.2 22 79-100 12-33 (219)
315 2v6i_A RNA helicase; membrane, 77.9 3.1 0.00011 38.5 5.7 53 116-174 173-225 (431)
316 1u94_A RECA protein, recombina 77.9 1.5 5.3E-05 39.3 3.5 39 82-123 62-100 (356)
317 2r44_A Uncharacterized protein 77.9 0.54 1.8E-05 41.8 0.5 21 80-100 43-63 (331)
318 3u06_A Protein claret segregat 77.8 0.84 2.9E-05 41.8 1.8 26 75-100 129-156 (412)
319 2wbe_C Bipolar kinesin KRP-130 77.7 0.78 2.7E-05 41.4 1.5 24 77-100 93-118 (373)
320 3d3q_A TRNA delta(2)-isopenten 77.5 1.2 4E-05 39.7 2.5 17 85-101 9-25 (340)
321 1yks_A Genome polyprotein [con 77.5 2.3 7.8E-05 39.5 4.7 67 116-195 179-245 (440)
322 1ex7_A Guanylate kinase; subst 77.1 1.1 3.9E-05 35.9 2.2 16 84-99 2-17 (186)
323 4eun_A Thermoresistant glucoki 77.1 1.1 3.8E-05 36.4 2.2 18 83-100 29-46 (200)
324 2ewv_A Twitching motility prot 77.0 1.2 4.2E-05 40.3 2.6 20 81-100 134-153 (372)
325 1knq_A Gluconate kinase; ALFA/ 77.0 1 3.4E-05 35.6 1.9 18 83-100 8-25 (175)
326 1iy2_A ATP-dependent metallopr 77.0 1.1 3.6E-05 38.8 2.1 53 44-100 35-90 (278)
327 2owm_A Nckin3-434, related to 76.9 0.95 3.3E-05 41.9 1.9 25 76-100 128-154 (443)
328 1zuh_A Shikimate kinase; alpha 76.9 1.1 3.7E-05 35.2 2.0 18 84-101 8-25 (168)
329 2rhm_A Putative kinase; P-loop 76.9 1 3.5E-05 36.2 1.9 19 83-101 5-23 (193)
330 3jvv_A Twitching mobility prot 76.8 1.2 4.1E-05 40.0 2.5 18 82-99 122-139 (356)
331 2iut_A DNA translocase FTSK; n 76.7 2.6 8.8E-05 40.3 4.8 41 83-123 214-255 (574)
332 4akg_A Glutathione S-transfera 76.5 1.8 6.3E-05 49.4 4.3 46 55-101 892-941 (2695)
333 1z6g_A Guanylate kinase; struc 76.4 1.2 4.2E-05 36.8 2.3 20 81-100 21-40 (218)
334 3bor_A Human initiation factor 76.4 13 0.00043 30.9 8.7 117 287-409 97-227 (237)
335 3bgw_A DNAB-like replicative h 76.3 2 7E-05 39.9 4.0 38 82-122 196-233 (444)
336 2r2a_A Uncharacterized protein 76.3 1.5 5.1E-05 35.7 2.7 22 86-107 8-29 (199)
337 3tif_A Uncharacterized ABC tra 76.1 2.2 7.4E-05 35.8 3.8 26 82-109 30-55 (235)
338 2c95_A Adenylate kinase 1; tra 76.1 1.2 4.2E-05 35.8 2.2 20 82-101 8-27 (196)
339 3eph_A TRNA isopentenyltransfe 75.9 1.3 4.6E-05 40.2 2.5 18 85-102 4-21 (409)
340 3t61_A Gluconokinase; PSI-biol 75.8 1.1 3.8E-05 36.4 1.9 17 84-100 19-35 (202)
341 1znw_A Guanylate kinase, GMP k 75.6 1.3 4.5E-05 36.2 2.2 22 79-100 16-37 (207)
342 1ojl_A Transcriptional regulat 75.6 1.2 4.2E-05 39.0 2.2 19 82-100 24-42 (304)
343 1cr0_A DNA primase/helicase; R 75.5 2.1 7.3E-05 37.2 3.8 23 80-102 32-54 (296)
344 3lnc_A Guanylate kinase, GMP k 75.5 1.4 4.7E-05 36.8 2.4 21 80-100 24-44 (231)
345 1um8_A ATP-dependent CLP prote 75.4 1.2 4.1E-05 40.4 2.2 18 83-100 72-89 (376)
346 1gvn_B Zeta; postsegregational 75.4 1.2 4E-05 38.8 2.0 18 84-101 34-51 (287)
347 2cdn_A Adenylate kinase; phosp 75.3 1.4 4.7E-05 35.8 2.3 18 84-101 21-38 (201)
348 1wp9_A ATP-dependent RNA helic 75.3 3.9 0.00013 38.0 5.8 74 116-200 363-447 (494)
349 1qde_A EIF4A, translation init 75.1 3.9 0.00013 33.6 5.2 70 288-362 82-161 (224)
350 2xxa_A Signal recognition part 74.9 16 0.00054 33.7 9.5 21 85-105 102-122 (433)
351 1via_A Shikimate kinase; struc 74.8 1.3 4.5E-05 34.9 2.1 17 85-101 6-22 (175)
352 1xp8_A RECA protein, recombina 74.7 2.1 7.1E-05 38.6 3.5 38 83-123 74-111 (366)
353 3umf_A Adenylate kinase; rossm 74.6 1.7 5.9E-05 35.9 2.7 20 83-102 29-48 (217)
354 2bdt_A BH3686; alpha-beta prot 74.5 1.3 4.4E-05 35.5 1.9 16 85-100 4-19 (189)
355 1tev_A UMP-CMP kinase; ploop, 74.5 1.2 4.1E-05 35.7 1.7 18 84-101 4-21 (196)
356 2r62_A Cell division protease 74.5 0.74 2.5E-05 39.4 0.5 18 83-100 44-61 (268)
357 3uie_A Adenylyl-sulfate kinase 74.4 1.3 4.3E-05 36.0 1.9 19 82-100 24-42 (200)
358 2plr_A DTMP kinase, probable t 74.4 1.3 4.4E-05 36.2 1.9 19 83-101 4-22 (213)
359 1nks_A Adenylate kinase; therm 74.3 1.3 4.4E-05 35.5 1.9 16 85-100 3-18 (194)
360 2c9o_A RUVB-like 1; hexameric 74.1 1.6 5.6E-05 40.7 2.8 20 82-101 62-81 (456)
361 1c9k_A COBU, adenosylcobinamid 74.0 2.3 7.8E-05 33.9 3.2 45 86-137 2-46 (180)
362 3fb4_A Adenylate kinase; psych 74.0 1.3 4.5E-05 36.4 1.9 17 85-101 2-18 (216)
363 4g1u_C Hemin import ATP-bindin 73.4 3.6 0.00012 35.2 4.6 26 82-109 36-61 (266)
364 2wwf_A Thymidilate kinase, put 73.1 1.7 5.9E-05 35.4 2.4 20 82-101 9-28 (212)
365 3dl0_A Adenylate kinase; phosp 72.9 1.4 5E-05 36.1 1.9 17 85-101 2-18 (216)
366 1f2t_A RAD50 ABC-ATPase; DNA d 72.8 1.5 5.3E-05 33.6 1.9 15 85-99 25-39 (149)
367 3gk5_A Uncharacterized rhodane 72.8 3 0.0001 29.8 3.4 36 288-323 55-90 (108)
368 1aky_A Adenylate kinase; ATP:A 72.7 1.7 5.7E-05 35.9 2.2 19 83-101 4-22 (220)
369 1zd8_A GTP:AMP phosphotransfer 72.6 1.5 5E-05 36.5 1.9 17 84-100 8-24 (227)
370 2ehv_A Hypothetical protein PH 72.6 2.1 7.1E-05 36.0 2.9 23 80-102 27-49 (251)
371 1ypw_A Transitional endoplasmi 72.6 2.4 8.2E-05 42.8 3.7 56 42-100 470-528 (806)
372 4fcw_A Chaperone protein CLPB; 72.6 1.4 4.9E-05 38.5 1.9 18 84-101 48-65 (311)
373 1e6c_A Shikimate kinase; phosp 72.5 1.5 5.2E-05 34.4 1.9 17 85-101 4-20 (173)
374 2bwj_A Adenylate kinase 5; pho 72.4 1.5 5.2E-05 35.3 1.9 18 83-100 12-29 (199)
375 1qf9_A UMP/CMP kinase, protein 72.4 1.5 5.2E-05 35.0 1.9 17 85-101 8-24 (194)
376 2iyv_A Shikimate kinase, SK; t 72.3 1.6 5.3E-05 34.8 1.9 17 85-101 4-20 (184)
377 2ff7_A Alpha-hemolysin translo 72.2 3 0.0001 35.2 3.7 25 82-108 34-58 (247)
378 3sr0_A Adenylate kinase; phosp 72.1 2 6.9E-05 35.1 2.5 17 86-102 3-19 (206)
379 2pl3_A Probable ATP-dependent 72.0 7.5 0.00026 32.2 6.2 71 287-362 96-177 (236)
380 1mv5_A LMRA, multidrug resista 71.8 3 0.0001 35.1 3.6 25 82-108 27-51 (243)
381 3gfo_A Cobalt import ATP-bindi 71.8 3.1 0.00011 35.8 3.7 25 82-108 33-57 (275)
382 1zak_A Adenylate kinase; ATP:A 71.8 1.6 5.4E-05 36.1 1.9 18 84-101 6-23 (222)
383 1g8p_A Magnesium-chelatase 38 71.7 1.3 4.3E-05 39.7 1.3 18 83-100 45-62 (350)
384 1jjv_A Dephospho-COA kinase; P 71.5 1.6 5.6E-05 35.5 1.9 16 85-100 4-19 (206)
385 3nwj_A ATSK2; P loop, shikimat 71.5 2.3 7.7E-05 36.0 2.8 19 82-100 47-65 (250)
386 2pcj_A ABC transporter, lipopr 71.5 3.2 0.00011 34.4 3.7 25 82-108 29-53 (224)
387 1sgw_A Putative ABC transporte 71.4 3.4 0.00012 34.0 3.8 18 82-99 34-51 (214)
388 3c8u_A Fructokinase; YP_612366 71.3 1.7 5.9E-05 35.5 2.0 18 83-100 22-39 (208)
389 2xau_A PRE-mRNA-splicing facto 71.3 10 0.00034 38.1 7.8 75 116-196 305-393 (773)
390 1ak2_A Adenylate kinase isoenz 71.2 1.9 6.6E-05 36.0 2.3 19 83-101 16-34 (233)
391 2r8r_A Sensor protein; KDPD, P 71.0 2.7 9.3E-05 34.8 3.0 24 85-108 8-31 (228)
392 1ukz_A Uridylate kinase; trans 71.0 1.7 5.9E-05 35.2 1.9 16 85-100 17-32 (203)
393 2pez_A Bifunctional 3'-phospho 70.9 1.7 5.9E-05 34.4 1.9 18 83-100 5-22 (179)
394 2jaq_A Deoxyguanosine kinase; 70.8 1.7 5.9E-05 35.1 1.9 16 85-100 2-17 (205)
395 1cke_A CK, MSSA, protein (cyti 70.7 1.7 5.9E-05 35.9 1.9 17 84-100 6-22 (227)
396 2pt5_A Shikimate kinase, SK; a 70.7 1.8 6.1E-05 33.8 1.9 16 85-100 2-17 (168)
397 4a74_A DNA repair and recombin 70.6 2.2 7.6E-05 35.3 2.5 22 81-102 23-44 (231)
398 2vli_A Antibiotic resistance p 70.6 1.5 5.2E-05 34.7 1.5 19 83-101 5-23 (183)
399 4f4c_A Multidrug resistance pr 70.5 10 0.00035 40.6 8.1 136 79-229 440-610 (1321)
400 3foj_A Uncharacterized protein 70.4 3.1 0.0001 29.2 2.9 35 288-322 56-90 (100)
401 2pze_A Cystic fibrosis transme 70.4 3.5 0.00012 34.3 3.7 19 81-99 32-50 (229)
402 1nn5_A Similar to deoxythymidy 70.1 2.1 7.2E-05 35.0 2.3 19 83-101 9-27 (215)
403 2if2_A Dephospho-COA kinase; a 70.1 1.8 6.3E-05 35.1 1.9 16 85-100 3-18 (204)
404 3nh6_A ATP-binding cassette SU 69.9 2.5 8.7E-05 37.0 2.8 26 82-109 79-104 (306)
405 1m7g_A Adenylylsulfate kinase; 69.9 1.8 6.2E-05 35.4 1.8 21 80-100 22-42 (211)
406 3iwh_A Rhodanese-like domain p 69.9 2.9 0.0001 29.7 2.7 35 288-322 56-90 (103)
407 1e4v_A Adenylate kinase; trans 69.9 1.9 6.4E-05 35.4 1.9 17 85-101 2-18 (214)
408 1g6h_A High-affinity branched- 69.6 3.7 0.00013 34.9 3.7 25 82-108 32-56 (257)
409 2pbr_A DTMP kinase, thymidylat 69.6 1.9 6.6E-05 34.5 1.9 15 86-100 3-17 (195)
410 2ixe_A Antigen peptide transpo 69.5 3.8 0.00013 35.2 3.8 25 82-108 44-68 (271)
411 2yvu_A Probable adenylyl-sulfa 69.5 1.9 6.6E-05 34.4 1.9 19 83-101 13-31 (186)
412 1q57_A DNA primase/helicase; d 69.5 3 0.0001 39.5 3.4 50 82-134 241-290 (503)
413 3kta_A Chromosome segregation 69.5 2 6.7E-05 34.1 1.9 16 85-100 28-43 (182)
414 1wv9_A Rhodanese homolog TT165 69.4 3.9 0.00013 28.3 3.2 35 289-323 54-88 (94)
415 1in4_A RUVB, holliday junction 69.4 2.5 8.5E-05 37.6 2.7 17 84-100 52-68 (334)
416 1b0u_A Histidine permease; ABC 69.4 3.8 0.00013 34.9 3.8 25 82-108 31-55 (262)
417 2z0h_A DTMP kinase, thymidylat 69.4 2 6.7E-05 34.6 1.9 16 86-101 3-18 (197)
418 1ji0_A ABC transporter; ATP bi 69.3 3.8 0.00013 34.4 3.7 25 82-108 31-55 (240)
419 1gku_B Reverse gyrase, TOP-RG; 69.2 10 0.00034 39.7 7.5 74 287-362 98-181 (1054)
420 3f9v_A Minichromosome maintena 69.1 2.2 7.6E-05 41.3 2.5 15 85-99 329-343 (595)
421 3eme_A Rhodanese-like domain p 69.0 3.1 0.00011 29.4 2.7 35 288-322 56-90 (103)
422 3asz_A Uridine kinase; cytidin 68.9 2 6.8E-05 35.1 1.8 17 84-100 7-23 (211)
423 1vpl_A ABC transporter, ATP-bi 68.9 4 0.00014 34.6 3.8 25 82-108 40-64 (256)
424 2olj_A Amino acid ABC transpor 68.9 4 0.00014 34.8 3.8 25 82-108 49-73 (263)
425 2wv9_A Flavivirin protease NS2 68.8 5.9 0.0002 39.0 5.4 67 116-195 412-478 (673)
426 1nij_A Hypothetical protein YJ 68.7 4.1 0.00014 35.9 3.9 15 86-100 7-21 (318)
427 3a4m_A L-seryl-tRNA(SEC) kinas 68.7 2 6.9E-05 36.6 1.9 17 85-101 6-22 (260)
428 3tqf_A HPR(Ser) kinase; transf 68.6 2.8 9.6E-05 33.1 2.5 21 82-102 15-35 (181)
429 2dhr_A FTSH; AAA+ protein, hex 68.3 2.5 8.5E-05 39.9 2.6 53 45-100 27-81 (499)
430 3be4_A Adenylate kinase; malar 68.3 2.3 7.9E-05 35.0 2.1 18 84-101 6-23 (217)
431 1vma_A Cell division protein F 68.2 3.1 0.00011 36.4 3.0 20 83-102 104-123 (306)
432 2xb4_A Adenylate kinase; ATP-b 68.1 2.1 7.3E-05 35.4 1.9 16 86-101 3-18 (223)
433 1rj9_A FTSY, signal recognitio 68.1 4.5 0.00015 35.4 4.0 18 83-100 102-119 (304)
434 2yz2_A Putative ABC transporte 67.9 4.3 0.00015 34.7 3.8 25 82-108 32-56 (266)
435 1g41_A Heat shock protein HSLU 67.8 2.4 8.3E-05 39.2 2.3 18 83-100 50-67 (444)
436 3qf7_A RAD50; ABC-ATPase, ATPa 67.5 2.1 7.3E-05 38.6 1.9 16 85-100 25-40 (365)
437 1pzn_A RAD51, DNA repair and r 67.4 4.3 0.00015 36.3 3.8 39 84-122 132-173 (349)
438 1ye8_A Protein THEP1, hypothet 67.3 3.1 0.00011 33.0 2.7 16 85-100 2-17 (178)
439 1np6_A Molybdopterin-guanine d 67.3 4 0.00014 32.2 3.3 15 85-99 8-22 (174)
440 1uf9_A TT1252 protein; P-loop, 67.3 2.3 7.7E-05 34.4 1.9 17 85-101 10-26 (203)
441 2ihy_A ABC transporter, ATP-bi 67.2 4.4 0.00015 34.9 3.7 25 82-108 46-70 (279)
442 2vhj_A Ntpase P4, P4; non- hyd 67.1 2.8 9.5E-05 36.9 2.4 24 82-105 122-145 (331)
443 3rc3_A ATP-dependent RNA helic 66.9 18 0.00061 35.6 8.4 73 118-202 324-401 (677)
444 3tlx_A Adenylate kinase 2; str 66.9 2.3 7.9E-05 35.8 1.9 19 83-101 29-47 (243)
445 2bbw_A Adenylate kinase 4, AK4 66.8 2.3 8E-05 35.8 1.9 17 84-100 28-44 (246)
446 3pxg_A Negative regulator of g 66.7 2.6 8.9E-05 39.5 2.4 19 83-101 201-219 (468)
447 1xjc_A MOBB protein homolog; s 66.6 3.5 0.00012 32.4 2.7 16 85-100 6-21 (169)
448 2ce7_A Cell division protein F 66.5 2.4 8.2E-05 39.7 2.0 52 46-100 13-66 (476)
449 2grj_A Dephospho-COA kinase; T 66.3 2.5 8.6E-05 34.1 1.9 38 86-132 15-52 (192)
450 2p5t_B PEZT; postsegregational 66.1 1.9 6.5E-05 36.6 1.2 18 83-100 32-49 (253)
451 3auy_A DNA double-strand break 65.8 2.4 8.2E-05 38.3 1.9 17 84-100 26-42 (371)
452 3g5j_A Putative ATP/GTP bindin 65.7 7.3 0.00025 28.8 4.4 35 289-323 90-125 (134)
453 2v9p_A Replication protein E1; 65.6 3.8 0.00013 35.8 3.0 19 82-100 125-143 (305)
454 4e22_A Cytidylate kinase; P-lo 65.5 2.8 9.6E-05 35.5 2.1 18 83-100 27-44 (252)
455 2cbz_A Multidrug resistance-as 65.4 3 0.0001 34.9 2.3 19 81-99 29-47 (237)
456 1vht_A Dephospho-COA kinase; s 64.8 2.7 9.2E-05 34.5 1.9 17 85-101 6-22 (218)
457 1zu4_A FTSY; GTPase, signal re 64.6 4 0.00014 36.0 3.0 20 83-102 105-124 (320)
458 2jlq_A Serine protease subunit 64.5 7.5 0.00026 36.1 5.1 67 116-195 190-256 (451)
459 3eiq_A Eukaryotic initiation f 64.5 3.8 0.00013 37.3 3.1 72 116-198 282-356 (414)
460 1htw_A HI0065; nucleotide-bind 64.5 3 0.0001 32.4 2.0 19 81-99 31-49 (158)
461 2jtq_A Phage shock protein E; 64.1 19 0.00065 24.0 5.9 35 287-322 40-75 (85)
462 3b9q_A Chloroplast SRP recepto 63.7 4.4 0.00015 35.4 3.1 19 82-100 99-117 (302)
463 1tf5_A Preprotein translocase 63.6 23 0.00077 35.6 8.3 73 283-361 119-208 (844)
464 2i3b_A HCR-ntpase, human cance 63.4 4.3 0.00015 32.6 2.8 43 188-233 103-146 (189)
465 1ry6_A Internal kinesin; kines 62.9 3.2 0.00011 37.2 2.1 18 83-100 83-102 (360)
466 4a2q_A RIG-I, retinoic acid in 62.8 16 0.00055 36.8 7.4 71 288-362 296-377 (797)
467 3fvq_A Fe(3+) IONS import ATP- 62.6 5.9 0.0002 35.5 3.8 25 82-108 29-53 (359)
468 3qks_A DNA double-strand break 62.5 3.2 0.00011 33.8 1.9 17 84-100 24-40 (203)
469 2ghi_A Transport protein; mult 62.3 3.7 0.00013 35.0 2.3 26 82-109 45-70 (260)
470 1rz3_A Hypothetical protein rb 62.2 3.3 0.00011 33.6 1.9 17 84-100 23-39 (201)
471 3hix_A ALR3790 protein; rhodan 62.1 6.2 0.00021 28.0 3.2 35 288-322 52-87 (106)
472 2pjz_A Hypothetical protein ST 61.9 7.5 0.00026 33.1 4.2 17 83-99 30-46 (263)
473 3m6a_A ATP-dependent protease 61.9 3.5 0.00012 39.5 2.2 19 82-100 107-125 (543)
474 3p32_A Probable GTPase RV1496/ 61.7 72 0.0024 28.3 10.9 17 85-101 81-97 (355)
475 3bs4_A Uncharacterized protein 61.5 7.5 0.00026 33.0 4.0 51 83-137 21-71 (260)
476 1ltq_A Polynucleotide kinase; 61.5 3.3 0.00011 36.0 1.9 17 85-101 4-20 (301)
477 4a2p_A RIG-I, retinoic acid in 61.4 11 0.00039 35.8 5.8 71 288-362 55-136 (556)
478 4h1g_A Maltose binding protein 61.3 3 0.0001 41.5 1.8 25 76-100 454-480 (715)
479 1uj2_A Uridine-cytidine kinase 61.3 3.4 0.00012 34.9 1.9 17 85-101 24-40 (252)
480 2onk_A Molybdate/tungstate ABC 61.1 6 0.00021 33.1 3.4 23 84-108 25-47 (240)
481 3fmo_B ATP-dependent RNA helic 61.0 4.5 0.00015 35.2 2.7 111 289-409 163-290 (300)
482 2f6r_A COA synthase, bifunctio 60.9 3.4 0.00012 35.6 1.9 17 85-101 77-93 (281)
483 1z47_A CYSA, putative ABC-tran 60.9 6.5 0.00022 35.2 3.7 24 82-107 40-63 (355)
484 2fsf_A Preprotein translocase 60.9 24 0.00083 35.4 8.0 57 284-346 111-171 (853)
485 2yyz_A Sugar ABC transporter, 60.8 6.7 0.00023 35.2 3.8 25 82-108 28-52 (359)
486 3rlf_A Maltose/maltodextrin im 60.6 6.7 0.00023 35.4 3.8 24 82-107 28-51 (381)
487 1nkt_A Preprotein translocase 60.2 29 0.001 35.0 8.4 74 283-362 147-237 (922)
488 3k1j_A LON protease, ATP-depen 60.1 7.3 0.00025 37.8 4.2 21 80-100 57-77 (604)
489 1odf_A YGR205W, hypothetical 3 60.0 3.7 0.00013 35.6 1.9 16 85-100 33-48 (290)
490 2f1r_A Molybdopterin-guanine d 59.9 2.6 8.8E-05 33.3 0.8 16 85-100 4-19 (171)
491 2qi9_C Vitamin B12 import ATP- 59.9 4.2 0.00014 34.3 2.2 26 81-108 24-49 (249)
492 2zu0_C Probable ATP-dependent 59.9 4.3 0.00015 34.7 2.3 18 82-99 45-62 (267)
493 2d2e_A SUFC protein; ABC-ATPas 59.8 4.2 0.00015 34.3 2.2 18 82-99 28-45 (250)
494 3tqc_A Pantothenate kinase; bi 59.7 7.3 0.00025 34.3 3.8 15 86-100 95-109 (321)
495 4eaq_A DTMP kinase, thymidylat 59.7 3.9 0.00013 34.0 2.0 19 82-100 25-43 (229)
496 2fsx_A RV0390, COG0607: rhodan 59.6 11 0.00036 28.7 4.3 37 287-323 79-116 (148)
497 2whx_A Serine protease/ntpase/ 59.5 13 0.00043 36.2 5.8 67 116-195 357-423 (618)
498 2it1_A 362AA long hypothetical 59.5 7.2 0.00025 35.0 3.8 18 82-99 28-45 (362)
499 3tbk_A RIG-I helicase domain; 59.4 12 0.0004 35.6 5.6 71 288-362 52-133 (555)
500 3pxi_A Negative regulator of g 59.2 4.1 0.00014 40.8 2.4 19 83-101 201-219 (758)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-61 Score=458.66 Aligned_cols=364 Identities=29% Similarity=0.510 Sum_probs=324.9
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-----CCCeEEE
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTAL 118 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~l 118 (423)
...+|+++++++.++++|.++||..|+|+|+++++.++.++++++++|||||||++|++|++..+... ..++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 44579999999999999999999999999999999999999999999999999999999999875432 2356899
Q ss_pred EEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcC
Q 014486 119 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDE 198 (423)
Q Consensus 119 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE 198 (423)
|++|+++|+.|++++++++.... ++++..++||.....+...+..+ ++|+|+||++|.+++......+.+++++|+||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred EEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 99999999999999999987664 78889999999988877777766 59999999999999998888899999999999
Q ss_pred cchhhccCCcHHHHHHHHHhC--CCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHH
Q 014486 199 CDKMLESLDMRRDVQEIFKMT--PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276 (423)
Q Consensus 199 ~h~~~~~~~~~~~~~~~~~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (423)
||++.+ .+|...+..+...+ ++..|++++|||+|+.+..++..++.++..+...... .....+.+.+..+....+.
T Consensus 212 ah~~~~-~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 212 ADRMLD-MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp HHHHTS-TTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHH
T ss_pred Hhhhhc-cCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHH
Confidence 999998 68999999998875 5688999999999999999988888877766554433 2334556677778888888
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
..+.+++..... ++||||++++.++.+++.|...++++..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 290 ~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~ 368 (434)
T 2db3_A 290 SKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKN 368 (434)
T ss_dssp HHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTT
T ss_pred HHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCccc
Confidence 889998887764 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
+++||+|++|.++.+|+||+||+||.|+.|.+++|+++..+......+.+.+....
T Consensus 369 v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 369 IKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG 424 (434)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998778788888888876543
No 2
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-60 Score=449.75 Aligned_cols=371 Identities=75% Similarity=1.189 Sum_probs=339.1
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.+..|+++++++.+.++|.++||..|+|+|.++++.++.++++++.+|||+|||++++++++..+.....++++||++|+
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 34679999999999999999999999999999999999999999999999999999999999887766666689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|+.+.++++....+++++..++|+.........+.++.++|+|+||+++..++......+.++++||+||||.+.
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 99999999999999888778999999999988887777777767999999999999988888888999999999999998
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 283 (423)
++.++...+..+....++..|++++|||+++.....+..++..+..+................+.......+...+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 166 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred hccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 75578888888999998899999999999999999888888888777766655555666777778888888889999999
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
.....+++||||++.+.+..+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGS 414 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
++|+++..|.||+||+||.|++|.+++++++.++..+++.+++.++..+..
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 999999999999999999999999999999888889999999999877654
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.2e-58 Score=436.47 Aligned_cols=364 Identities=37% Similarity=0.639 Sum_probs=324.0
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.+|+++++++.+.++|.+.||..|+|+|+++++.++.++++++.+|||+|||++|+++++..+.....+.++||++|+++
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876555569999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+.+.++++.... ++.+..+.|+.....+...+..+ ++|+|+||+++..++......+.++++||+||||++.+
T Consensus 117 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~- 193 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN- 193 (410)
T ss_dssp HHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS-
T ss_pred HHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh-
Confidence 9999999999987665 78899999999888877777666 59999999999999988888889999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh-HHHHHHHHHHHH
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLD 284 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~ 284 (423)
.++...+..+...+++..|++++|||+++........++..+..+...... .....+.+.+..... ..+...+.+++.
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 688999999999999999999999999998877777777777666544332 233445555555544 347788888888
Q ss_pred hhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEcc
Q 014486 285 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 364 (423)
Q Consensus 285 ~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~ 364 (423)
....+++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 273 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 352 (410)
T ss_dssp HHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred hcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEEC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhh
Q 014486 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGS 414 (423)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
+|+++..|.||+||+||.|++|.+++|+++ .+...+..++++++..+..
T Consensus 353 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 353 LPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp CCSSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEE
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCCcee
Confidence 999999999999999999999999999985 6778888999999876654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.1e-57 Score=430.28 Aligned_cols=366 Identities=39% Similarity=0.637 Sum_probs=323.4
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
...+|+++++++.+.++|.++||.+|+|+|.++++.++.++++++.+|||+|||++++++++..+.....+.++||++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 34579999999999999999999999999999999999999999999999999999999999988766556689999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|+.+.++++.... ++++..+.|+.....+...+... ++|+|+||+++..++......+.++++||+||||++.
T Consensus 99 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 176 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNET-VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 176 (400)
T ss_dssp HHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSC-CSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHS
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCC-CCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhh
Confidence 999999999999987665 78888999988877666555444 6999999999999888877888999999999999987
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL 283 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 283 (423)
+ ..+...+..+...+++..|++++|||++......+...+..+..+..... .....+...+.......+...+..++
T Consensus 177 ~-~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 177 S-RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp S-HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred h-hchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHH
Confidence 7 57888888898888889999999999999988888888877765544332 33345556666677778888888898
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
.....+++||||++.+.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF 333 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEES
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
++|+++..|.||+||+||.|++|.+++++++ .+...+..+++.++..+..+
T Consensus 334 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 334 DFPKTAETYLHRIGRSGRFGHLGLAINLINW-NDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp SCCSSHHHHHHHHCBSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTCCCEEC
T ss_pred CCCCCHHHHHHhcchhcCCCCCceEEEEecc-chHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999999999986 46677888999998776543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-58 Score=434.43 Aligned_cols=366 Identities=39% Similarity=0.651 Sum_probs=311.6
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|+++++++.+.+.|.+.|+..|+++|.++++.++.++++++.+|||+|||++|++++++.+.....+.++||++|++
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 35699999999999999999999999999999999999999999999999999999999999887665566899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+.+.++++.... +..+....|+.........+..+.++|+|+||++|...+......+.++++||+||||++.+
T Consensus 119 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp HHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhc
Confidence 99999999999988765 78888889998888777777766689999999999999988888888999999999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeCh-HHHHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLL 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll 283 (423)
.++...+..++..+++..|++++|||++.........++..+..+...... .....+...+..... ..+...+..++
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 198 -RGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp -TTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred -cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 688999999999999999999999999999888888888877766554433 233444455555443 34778888888
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 276 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~ 355 (414)
T 3eiq_A 276 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 355 (414)
T ss_dssp HSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEES
T ss_pred HhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEe
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGS 414 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
++|+++..|.||+||+||.|++|.+++++++ .+...+..+++.++..+..
T Consensus 356 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 356 DLPTNRENYIHRIGRGGRFGRKGVAINMVTE-EDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp SCCSSTHHHHHHSCCC-------CEEEEECS-THHHHHHHHHHHTTCCCEE
T ss_pred CCCCCHHHhhhhcCcccCCCCCceEEEEEcH-HHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999999999999985 5677788999998876654
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.3e-57 Score=430.01 Aligned_cols=367 Identities=34% Similarity=0.559 Sum_probs=322.3
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
...+|+++++++.++++|.+.||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+.....++++||++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3457999999999999999999999999999999999997 89999999999999999999999888777677999999
Q ss_pred cChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcc
Q 014486 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECD 200 (423)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h 200 (423)
|+++|+.|+++.++++....+++.+....++....... ...++|+|+||+++..++.. ....+.++++||+||||
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 99999999999999998877788888888876544322 23369999999999998865 55667899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC-hHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKL 279 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 279 (423)
.+.+...+...+..+...++...|++++|||+++........++..+..+....... ....+...+.... ...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCChHHHHHHH
Confidence 998766888889999999999999999999999999888888888877665554432 3334444444443 45677888
Q ss_pred HHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCE
Q 014486 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI 359 (423)
Q Consensus 280 ~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~ 359 (423)
..++.....+++||||++.+.+..+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 258 ~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 337 (412)
T 3fht_A 258 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 337 (412)
T ss_dssp HHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEE
T ss_pred HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC------CcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 360 VINYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 360 vi~~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
||++++|+ +...|+||+||+||.|+.|.+++++++.++...++.+++.++..+...
T Consensus 338 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 338 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp EEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred EEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 99999995 568999999999999999999999998888999999999999776554
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-57 Score=431.47 Aligned_cols=363 Identities=31% Similarity=0.507 Sum_probs=312.6
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-----------
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----------- 111 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----------- 111 (423)
....+|+++++++.+.++|...||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+...
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 345579999999999999999999999999999999999999999999999999999999998765321
Q ss_pred -------CCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC
Q 014486 112 -------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK 184 (423)
Q Consensus 112 -------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~ 184 (423)
...+++||++|+++|+.|+++.++++.... ++++..++|+.....+...+..+ ++|+|+||++|..++...
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERG 169 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTT
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCC-CCEEEEChHHHHHHHHcC
Confidence 122579999999999999999999987654 78999999999888777777665 699999999999999888
Q ss_pred CCCCCCccEEEEcCcchhhccCCcHHHHHHHHHh--CCC--CceEEEEeccCCccHHHHHHHhccCCceeeecccccccc
Q 014486 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM--TPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL 260 (423)
Q Consensus 185 ~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~--~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (423)
...+.++++||+||||.+.+ .++...+..+... ++. ..|++++|||+++........++..+..+...... ...
T Consensus 170 ~~~~~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 247 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STS 247 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHH-TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CC
T ss_pred CcChhhCcEEEEEChhHhhc-cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCc
Confidence 88889999999999999988 6789999888874 332 57899999999999888888888877655543332 233
Q ss_pred ccceEEEEEeChHHHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc
Q 014486 261 HGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339 (423)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 339 (423)
..+...+.......+...+.++++.. ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.
T Consensus 248 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 248 ENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp SSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSS
T ss_pred cCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCC
Confidence 45566677777888888888988877 46789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 340 ~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|+++ .+......+.+.+..
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVE 397 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECG-GGGGGHHHHHHHHHH
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcc-ccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999985 455556667666653
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1e-56 Score=423.14 Aligned_cols=358 Identities=31% Similarity=0.556 Sum_probs=314.7
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..+|+++++++.+.++|.+.|+..|+|+|.++++.++.+ +++++.+|||+|||++++++++..+.....++++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 357999999999999999999999999999999999998 899999999999999999999998877666669999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
+++|+.|+++.++++.... ++.+....++...... ...++|+|+||+++...+......+.++++||+||||.+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 157 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNM 157 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhh
Confidence 9999999999999987654 6777777766433221 123699999999999999888888999999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe-ChHHHHHHHHH
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLND 281 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 281 (423)
.+..++...+..+...+++..|++++|||+++........++..+..+...... .........+... ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 158 LDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHH
Confidence 886788889999999999999999999999999888888888777665544433 2233444444444 45567777888
Q ss_pred HHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE
Q 014486 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (423)
Q Consensus 282 ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi 361 (423)
++.....+++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 237 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 316 (395)
T 3pey_A 237 LYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV 316 (395)
T ss_dssp HHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE
Confidence 88877889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------CcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 362 NYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 362 ~~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|+ ++..|.||+||+||.|++|.+++++.+.++...++.+++.++
T Consensus 317 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 317 NYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp ESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999 999999999999999999999999998888899999999887
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-55 Score=411.40 Aligned_cols=361 Identities=36% Similarity=0.591 Sum_probs=317.0
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEe
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 121 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 121 (423)
.+..+|+++++++.+.++|.+.|+..|+|+|.++++.++.+ +++++.+|||+|||++++++++..+...+ +.++||++
T Consensus 3 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-~~~~lil~ 81 (367)
T 1hv8_A 3 VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN-GIEAIILT 81 (367)
T ss_dssp CCCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-SCCEEEEC
T ss_pred cccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccC-CCcEEEEc
Confidence 34567999999999999999999999999999999999988 68999999999999999999988776543 34899999
Q ss_pred cChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch
Q 014486 122 HTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (423)
Q Consensus 122 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~ 201 (423)
|+++|+.|+++.+.++.... ++.+..+.|+.........+.+ ++|+|+||+++...+......+.++++||+||||.
T Consensus 82 P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKN--ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHT--CSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCC--CCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999999999987654 7788899999887766666653 59999999999999988888889999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHH
Q 014486 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLND 281 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (423)
+.+ .++...+..+...+++..+++++|||+++........++..+..+..... ..+...+.......+...+..
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 159 MLN-MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHT-TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHH
T ss_pred hhh-hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHH
Confidence 987 67888999999999899999999999999888887777766544333221 244556667777788888888
Q ss_pred HHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE
Q 014486 282 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 361 (423)
Q Consensus 282 ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi 361 (423)
++. ....++||||++.+.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 233 ~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 233 LLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred HHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 776 3567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 362 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 362 ~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
++++|+++..|.||+||+||.|++|.+++++++ .+...+..+++.++..+..+
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINR-REYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT-TSHHHHHHHHHHHTCCCCCB
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcH-HHHHHHHHHHHHhCCCCcee
Confidence 999999999999999999999999999999985 56778899999999877643
No 10
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.9e-58 Score=440.88 Aligned_cols=366 Identities=34% Similarity=0.561 Sum_probs=179.8
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..+|+++++++.++++|.++||..|+|+|.++++.++.+ +++++.+|||||||++|++|++..+......+++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 357999999999999999999999999999999999997 889999999999999999999999887777779999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcch
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~ 201 (423)
+++|+.|+++.++++....+++.+....++....... ....+|+|+||+++..++.+ ..+.+.++++||+||+|+
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 9999999999999998877788888888876543221 22358999999999998865 456678999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC-hHHHHHHHH
Q 014486 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLN 280 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (423)
+.+..++...+..+...++...|++++|||++.....+...++..+..+....... ....+.+.+..+. ...+...+.
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHHHH
Confidence 98756888889999999999999999999999999888888888877666554332 2233333333333 245566677
Q ss_pred HHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEE
Q 014486 281 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV 360 (423)
Q Consensus 281 ~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~v 360 (423)
.++.....+++||||++...++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~V 405 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 405 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEE
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC------CcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 361 INYDMPD------SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 361 i~~~~~~------s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
|++++|. +...|+||+||+||.|+.|.+++|+++..+...++.+++.++..+...
T Consensus 406 I~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 406 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred EEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 9999994 668999999999999999999999998888899999999998776544
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.1e-57 Score=425.72 Aligned_cols=365 Identities=39% Similarity=0.652 Sum_probs=183.6
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
...|+++++++.+.++|.+.|+..|+|+|+++++.++.++++++.+|||+|||++|+++++..+.....++++||++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 45699999999999999999999999999999999999999999999999999999999999887766666999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+.+.+.++.... ++++..++|+.........+.. ++|+|+||+++...+......+.++++||+||||.+.+
T Consensus 100 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp HHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 99999999999987664 7889999999887766665553 59999999999998888778888999999999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHH-HHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLL 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll 283 (423)
.++...+..+...+++..|++++|||+++........++..+..+...... .....+...+....... +...+..++
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 177 -SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE-LTLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp -TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred -CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc-ccCCCceEEEEEcCchhhHHHHHHHHH
Confidence 688999999999999999999999999998888888888877766554332 12223333333333322 556677777
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
+....+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 255 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~ 334 (394)
T 1fuu_A 255 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
++|+++..|.||+||+||.|++|.+++++++ .+...+..+++.++..+...
T Consensus 335 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 335 DLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHcCcccCCCCCceEEEEEch-hHHHHHHHHHHHhCCccccc
Confidence 9999999999999999999999999999975 46667888888888766543
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.4e-54 Score=424.67 Aligned_cols=358 Identities=25% Similarity=0.426 Sum_probs=294.2
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccc--cCCceEEEccCCCcchhHHHHHHhhccCCC----CCCeEEEEEecChHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTREL 126 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~P~~~L 126 (423)
+++.++++|.++||..|+|+|.++++.++ .++++++.+|||+|||++|++|++..+... ...+++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 678999999999999999999999765433 234589999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCcchh
Q 014486 127 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 202 (423)
Q Consensus 127 ~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvDE~h~~ 202 (423)
+.|+++.++++... .+.+.+..+.|+.........+....++|+|+||++|..++... ...+..+++||+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999999988642 24567888899988887777776655799999999999877654 345678999999999999
Q ss_pred hccCCcHHHHHHHHHhCC-------CCceEEEEeccCCccHHHHHHHhccCCceeeeccc---cccccccceEEEEEeCh
Q 014486 203 LESLDMRRDVQEIFKMTP-------HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE---AKLTLHGLVQHYIKLSE 272 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 272 (423)
.+ .+|...+..+...++ ...|++++|||+++.+...+..++..+..+..... .......+...+.....
T Consensus 188 ~~-~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 188 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 98 678888877766543 36799999999999988888888877665544321 11222333444444332
Q ss_pred H-HHH----HHHHHHHHh-hcCCcEEEEEcChhhHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEE
Q 014486 273 L-EKN----RKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (423)
Q Consensus 273 ~-~~~----~~l~~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili 343 (423)
. .+. ..+...+.. ....++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 1 221 222333332 45679999999999999999999887 89999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+ .+...+..+++..+..+
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~ 414 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVI 414 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCC
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999985 57777888887765444
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.3e-54 Score=422.84 Aligned_cols=358 Identities=25% Similarity=0.427 Sum_probs=292.6
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccc--cCCceEEEccCCCcchhHHHHHHhhccCCCC----CCeEEEEEecChHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTREL 126 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~--~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L 126 (423)
+++.++++|.+.||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+...+ ..+++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 5789999999999999999999998764332 33589999999999
Q ss_pred HHHHHHHHHHHhcc---CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCcchh
Q 014486 127 AYQICHEFERFSTY---LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKM 202 (423)
Q Consensus 127 ~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvDE~h~~ 202 (423)
+.|+++.++++... .+...+..+.|+.........+....++|+|+||++|..++... ...+.++++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 23567888899988877777765545799999999999877654 235678999999999999
Q ss_pred hccCCcHHHHHHHHHhC-------CCCceEEEEeccCCccHHHHHHHhccCCceeeeccc---cccccccceEEEEEeCh
Q 014486 203 LESLDMRRDVQEIFKMT-------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE---AKLTLHGLVQHYIKLSE 272 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 272 (423)
.+ .+|...+..+...+ ....|++++|||+++.+......++..+..+..... .......+...+.....
T Consensus 239 ~~-~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 239 LE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp TS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hc-cchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 88 67888877776554 336789999999999988888888777665544321 11222333344444332
Q ss_pred H-HHH----HHHHHHHHh-hcCCcEEEEEcChhhHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEE
Q 014486 273 L-EKN----RKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 343 (423)
Q Consensus 273 ~-~~~----~~l~~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili 343 (423)
. .+. ..+...+.. ....++||||+++..++.+++.|... ++.+..+||++++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 1 222 222222322 45679999999999999999999886 89999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 344 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 344 ~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
||+++++|+|+|++++||++++|.++..|+||+||+||.|+.|.+++++.+ .+...+..+++.++..+
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~ 465 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVI 465 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCC
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999985 56778888888776444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-53 Score=390.84 Aligned_cols=336 Identities=34% Similarity=0.543 Sum_probs=286.4
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (423)
+++.+.++|.++|+..|+|+|.++++.++.++++++.+|||+|||++++++++.. +.++||++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999998875 2389999999999999999
Q ss_pred HHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHH
Q 014486 133 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 212 (423)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~ 212 (423)
.++++.... ++++..++|+.........+.+ ++|+|+||+++...+......+.++++||+||||.+.+ .++...+
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~~ 150 (337)
T 2z0m_A 75 HIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE-MGFIDDI 150 (337)
T ss_dssp HHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH-TTCHHHH
T ss_pred HHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc-cccHHHH
Confidence 999987664 7789999998887766666554 59999999999998888777888999999999999988 6888899
Q ss_pred HHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEE
Q 014486 213 QEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVV 292 (423)
Q Consensus 213 ~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~i 292 (423)
..+....+...+++++|||+++.....+..++..+..+... .........+.......+ .....+.....+++|
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 224 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVI 224 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEE
Confidence 99999999999999999999999888888887766554322 122333444444443322 223556666778999
Q ss_pred EEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchh
Q 014486 293 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTY 372 (423)
Q Consensus 293 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~ 372 (423)
|||++.+.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|
T Consensus 225 vf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~ 300 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTY 300 (337)
T ss_dssp EECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHH
T ss_pred EEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHh
Confidence 99999999999998887 57899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhc
Q 014486 373 LHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 373 ~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
.||+||+||.|++|.+++++. .+....+.+++.++.
T Consensus 301 ~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 301 IHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-----
T ss_pred hHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhcc
Confidence 999999999999999999998 677778888877754
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-54 Score=414.99 Aligned_cols=362 Identities=29% Similarity=0.509 Sum_probs=265.2
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
.|...++++.+.+.+.+.|+..|+++|.++++.++.+ +++++.+|||+|||++|+++++..+.....++++||++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3555678888999999999999999999999999998 89999999999999999999999887776667999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+.+.++++.... ++.+....++..... ....++|+|+||+++...+......+.++++||+||||.+.+
T Consensus 200 ~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp HHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred HHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 99999999999987554 445444444332211 122369999999999999888888889999999999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEe-ChHHHHHHHHHHH
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLL 283 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll 283 (423)
+.++...+..+...+++..|++++|||+++........+...+..+....... ........+... ....+...+..++
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEEL-SVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccC-CcccceEEEEECCchHHHHHHHHHHH
Confidence 66888999999999999999999999999988888888887776655443322 223333334333 4455677788888
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEc
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINY 363 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~ 363 (423)
.....+++||||++++++..+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 353 ~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 353 GLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp C---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC-
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEE
Confidence 88788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC------CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 364 DMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 364 ~~~------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
++| .++..|.||+||+||.|++|.+++++.+..+...++.+++.++..+...
T Consensus 433 ~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l 490 (508)
T 3fho_A 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRV 490 (508)
T ss_dssp ---CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC--
T ss_pred CCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccC
Confidence 999 7899999999999999999999999998888888999999998766543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.7e-52 Score=406.22 Aligned_cols=339 Identities=18% Similarity=0.214 Sum_probs=271.6
Q ss_pred cCCCCcCCCCCHHHHHHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 44 HSSGFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..+.+.++++++.+.+.|++ +||..|+|+|.++++.++.++++++.+|||+|||++|++|++... .++||++|
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~------g~~lVisP 92 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD------GFTLVICP 92 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS------SEEEEECS
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC------CcEEEEeC
Confidence 34456679999999999998 599999999999999999999999999999999999999998742 28999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH-----hcCCCcEEEechHHHH------HHHhcCCCCCCCc
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL-----KNECPQIVVGTPGRIL------ALARDKDLSLKNV 191 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ilv~T~~~l~------~~~~~~~~~~~~~ 191 (423)
+++|+.|+.+.+.++ ++++..++++.........+ ..+.++|+|+||++|. ..+.. ...+.++
T Consensus 93 ~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp CHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 999999999999887 67888888887765544332 2455799999999874 22222 2345688
Q ss_pred cEEEEcCcchhhcc-CCcHHHHHH--HHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEE
Q 014486 192 RHFILDECDKMLES-LDMRRDVQE--IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI 268 (423)
Q Consensus 192 ~~vVvDE~h~~~~~-~~~~~~~~~--~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
++||+||||++..+ .+|+..+.. .+....+..+++++|||+++.+...+..++..+....+... .....+.....
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~~~v~ 244 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLYYEVR 244 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccEEEEE
Confidence 99999999999874 336665543 23333446889999999999887777766654433322221 11122222222
Q ss_pred EeC--hHHHHHHHHHHHHh-hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc
Q 014486 269 KLS--ELEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT 345 (423)
Q Consensus 269 ~~~--~~~~~~~l~~ll~~-~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T 345 (423)
... ...+...+.+++.. ..++++||||++++.++.+++.|...|+.+..+|+++++.+|..+++.|++|+.+|||||
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 245 QKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred eCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 221 23445566666653 356899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
+++++|+|+|++++||++++|.|+..|.|++||+||.|++|.+++++++.+
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 999999999999999999999999999999999999999999999997543
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.3e-51 Score=396.04 Aligned_cols=335 Identities=17% Similarity=0.236 Sum_probs=270.3
Q ss_pred CCCcCCCCCHHHHHHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 46 SGFRDFLLKPELLRAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
.+|+++++++.+.+.|.+ +|+..|+|+|.++++.++.++++++.+|||+|||++|++|++... .++||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------GLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS------SEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC------CCEEEECChH
Confidence 368999999999999998 799999999999999999999999999999999999999998652 2899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK 201 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~ 201 (423)
+|+.|+.+.++++ ++.+..++++....... ..+..+.++|+++||+++........+...++++||+||||+
T Consensus 76 aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 76 SLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 9999999998875 67888888877654433 334456689999999998532111123347889999999999
Q ss_pred hhcc-CCcHHHHHHH---HHhCCCCceEEEEeccCCccHHHHHHHhcc-CCceeeeccccccccccceEEEEEeChHHHH
Q 014486 202 MLES-LDMRRDVQEI---FKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276 (423)
Q Consensus 202 ~~~~-~~~~~~~~~~---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (423)
+..+ .+|+..+..+ ...++ ..+++++|||+++.....+...+. ....+...... ...+. +.......+.
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---r~~l~--~~v~~~~~~~ 224 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFD---RPNIR--YMLMEKFKPL 224 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC---CTTEE--EEEEECSSHH
T ss_pred cCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC---CCceE--EEEEeCCCHH
Confidence 9874 3466555443 44443 578999999999876654443332 22222222221 12222 2222334556
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
..+.+++....++++||||++++.++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 67888888777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 357 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+++||++++|+|+..|.||+||+||.|++|.+++++++.+.
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 99999999999999999999999999999999999976443
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-49 Score=376.12 Aligned_cols=327 Identities=19% Similarity=0.311 Sum_probs=259.4
Q ss_pred HHHHHHhC-CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 57 LLRAIVDS-GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 57 ~~~~l~~~-~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
+.+.+++. |+ +|+|+|.++++.++.++++++.+|||+|||++++++++..... ++++||++|+++|+.|+++.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHHH
Confidence 34455553 56 7999999999999999999999999999999999988877633 3389999999999999999999
Q ss_pred HHhccCCCceEEEEEcCcch---HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc-------
Q 014486 136 RFSTYLPDIKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES------- 205 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~------- 205 (423)
++.. .++++..++|+.+. ......+..+.++|+|+||+++..++.. ..+.++++||+||||++..+
T Consensus 86 ~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 86 KLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 9876 48899999999987 4455666666679999999999887764 55678999999999987642
Q ss_pred ---CCcHHH-HHHHHHhCC-----------CCceEEEEecc-CCccHH-HHHHHhccCCceeeeccccccccccceEEEE
Q 014486 206 ---LDMRRD-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI 268 (423)
Q Consensus 206 ---~~~~~~-~~~~~~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
.+|... +..++..++ ...|++++||| +|.... ........ +.... .......+.+.+.
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~i~~~~~ 236 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVSVARNITHVRI 236 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-CCCCCCSEEEEEE
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-cccccccchheee
Confidence 355555 677777665 78899999999 565543 22232222 11111 1112233333333
Q ss_pred EeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHhhhcCCccEEEE---
Q 014486 269 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA--- 344 (423)
Q Consensus 269 ~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~ili~--- 344 (423)
.. .+...+..+++.. ++++||||+++..++.+++.|...|+.+. .+||. +|. ++.|++|+.+||||
T Consensus 237 ~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s 306 (414)
T 3oiy_A 237 SS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQA 306 (414)
T ss_dssp SS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECC
T ss_pred cc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecC
Confidence 33 3455667777764 48999999999999999999999999998 88884 444 99999999999999
Q ss_pred -cCccccCCCCCC-CCEEEEccCC--CCcchhhhcccccCCCC----CceEEEEEecCcccHHHHHHHHHHHh
Q 014486 345 -TDLVGRGIDIER-VNIVINYDMP--DSADTYLHRVGRAGRFG----TKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 345 -T~~~~~Gld~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
|+++++|+|+|+ +++||++++| .++..|+||+||+||.| ..|.+++++ .+...+..+++.++
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 478999888 56777888888887
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.6e-48 Score=388.37 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=217.4
Q ss_pred HHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHH
Q 014486 58 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
.+++..+|+..|+++|.++++.++.++++++++|||+|||++|+++++..+...+ .+.++||++|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999987654332 22489999999999999999999
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCcchhhccCCcHHHHHH
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQE 214 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~vVvDE~h~~~~~~~~~~~~~~ 214 (423)
++.... ++++..++|+.........+..+ ++|+|+||++|.+.+....+ .+.++++||+||||++.+...+...+..
T Consensus 83 ~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 83 KYFERH-GYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHTTTT-TCCEEEECSSSCSSSCHHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHhccC-CceEEEEeCCccccccHHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 988653 78999999988665555555444 69999999999998887766 6889999999999999875444444433
Q ss_pred HHHh-----CCCCceEEEEeccCCc-------cH-HHHHHH---------------------hccCCceeeeccccccc-
Q 014486 215 IFKM-----TPHDKQVMMFSATLSK-------EI-RPVCKK---------------------FMQDPMEIYVDDEAKLT- 259 (423)
Q Consensus 215 ~~~~-----~~~~~~~v~~SAT~~~-------~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~- 259 (423)
.+.. .++.++++++|||+.. .. ..+... +...|............
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 3332 3467899999999972 11 111111 11111100000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014486 260 -------------------------------------------------------------------------------- 259 (423)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (423)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------cccceEEEEE----------------eChHHHHHHHHHHHHhh----cCCc
Q 014486 260 -----------------------------LHGLVQHYIK----------------LSELEKNRKLNDLLDAL----DFNQ 290 (423)
Q Consensus 260 -----------------------------~~~~~~~~~~----------------~~~~~~~~~l~~ll~~~----~~~~ 290 (423)
...+.+.+.. .....+...+.+++... ++++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 0000000000 01234556667777665 5689
Q ss_pred EEEEEcChhhHHHHHHHHHhCC----CCeEEE--------cCCCCHHHHHHHHHhhhc-CCccEEEEcCccccCCCCCCC
Q 014486 291 VVIFVKSVSRAAELNKLLVECN----FPSICI--------HSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 291 ~ivf~~~~~~~~~l~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~ 357 (423)
+||||+++..++.+++.|...+ +++..+ |+++++.+|.++++.|++ |+.+|||||+++++|+|+|++
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
++||+||+|+++..|+||+|| ||. +.|.++++++..
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~ 516 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 516 (696)
T ss_dssp SEEEEESCC--CCCC-----------CCCEEEEEESCH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCC
Confidence 999999999999999999999 998 778998888754
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.9e-46 Score=367.39 Aligned_cols=325 Identities=21% Similarity=0.239 Sum_probs=223.8
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ .++++||++|+++|+.||.+.++++.... +++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcE
Confidence 799999999999999999999999999999999999988766543 14489999999999999999999998765 789
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-----
Q 014486 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMT----- 219 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~----- 219 (423)
+..++|+.........+..+ ++|+|+||+++...+..... .+.++++||+||||++.+...+...+..+....
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCCCcchhhHHHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 99999998776655555544 59999999999998888776 788999999999999987444444443443332
Q ss_pred CCCceEEEEeccCCccH----HHHH------HHhccCCceeeeccccc----cccccceEEEEEe---------------
Q 014486 220 PHDKQVMMFSATLSKEI----RPVC------KKFMQDPMEIYVDDEAK----LTLHGLVQHYIKL--------------- 270 (423)
Q Consensus 220 ~~~~~~v~~SAT~~~~~----~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------------- 270 (423)
.+..+++++|||++... .... ...+... .+....... .............
T Consensus 162 ~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
T 3tbk_A 162 DPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQL 240 (555)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHH
Confidence 24578999999996421 1111 1111100 010000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014486 271 -------------------------------------------------------------------------------- 270 (423)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (423)
T Consensus 241 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 320 (555)
T 3tbk_A 241 MKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDA 320 (555)
T ss_dssp HHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence
Q ss_pred -----------------------------------------------ChHHHHHHHHHHHHh----hcCCcEEEEEcChh
Q 014486 271 -----------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVS 299 (423)
Q Consensus 271 -----------------------------------------------~~~~~~~~l~~ll~~----~~~~~~ivf~~~~~ 299 (423)
....|...+.+++.. .+.+++||||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~ 400 (555)
T 3tbk_A 321 QMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRA 400 (555)
T ss_dssp CHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHH
T ss_pred hHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHH
Confidence 012344455555544 25689999999999
Q ss_pred hHHHHHHHHHhCC------------CCeEEEcCCCCHHHHHHHHHhhhc-CCccEEEEcCccccCCCCCCCCEEEEccCC
Q 014486 300 RAAELNKLLVECN------------FPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMP 366 (423)
Q Consensus 300 ~~~~l~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~~~vi~~~~~ 366 (423)
.++.+++.|...+ .....+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|++|
T Consensus 401 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p 480 (555)
T 3tbk_A 401 LVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYV 480 (555)
T ss_dssp HHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCC
T ss_pred HHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCC
Confidence 9999999998864 344455679999999999999999 999999999999999999999999999999
Q ss_pred CCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 367 DSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 367 ~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+|+..|+||+|| ||. +.|.+++|+++...
T Consensus 481 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 481 GNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp SSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred CCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 999999999999 998 88999999986544
No 21
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-46 Score=381.54 Aligned_cols=331 Identities=21% Similarity=0.251 Sum_probs=205.8
Q ss_pred hCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHhcc
Q 014486 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTY 140 (423)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~ 140 (423)
.+|+..|+|+|.++++.++.++++++++|||+|||++|+++++..+...+ .+.++||++|+++|+.||.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 34788999999999999999999999999999999999999998766543 1448999999999999999999999876
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCcchhhccCCcHHHHHHHHHh-
Q 014486 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM- 218 (423)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~- 218 (423)
. ++++..++|+.........+..+ ++|+|+||++|...+..... .+.++++||+||||++.....+...+..+...
T Consensus 323 ~-~~~v~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 323 Q-GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp G-TCCEEEECCC-----CHHHHHHT-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred C-CceEEEEeCCcchhhhHHHhhCC-CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 5 78999999998776665555555 69999999999998887766 78899999999999998743334333333332
Q ss_pred ---CCCCceEEEEeccCCcc-----------HHHHH------------------HHhccCCceeeecccccc--c-----
Q 014486 219 ---TPHDKQVMMFSATLSKE-----------IRPVC------------------KKFMQDPMEIYVDDEAKL--T----- 259 (423)
Q Consensus 219 ---~~~~~~~v~~SAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~--~----- 259 (423)
..+..+++++|||++.. +..+. ..+...+........... .
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 25568999999999531 11111 111111111100000000 0
Q ss_pred ---------c-cc---------ceEEEEE-------e-------------------------------------------
Q 014486 260 ---------L-HG---------LVQHYIK-------L------------------------------------------- 270 (423)
Q Consensus 260 ---------~-~~---------~~~~~~~-------~------------------------------------------- 270 (423)
. .. ....... +
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 00 0000000 0
Q ss_pred -------------------------------------------------ChHHHHHHHHHHHHh----hcCCcEEEEEcC
Q 014486 271 -------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKS 297 (423)
Q Consensus 271 -------------------------------------------------~~~~~~~~l~~ll~~----~~~~~~ivf~~~ 297 (423)
....|...+..++.. .++.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 012233445555543 456899999999
Q ss_pred hhhHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHhhhc-CCccEEEEcCccccCCCCCCCCEEEEcc
Q 014486 298 VSRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYD 364 (423)
Q Consensus 298 ~~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~~~vi~~~ 364 (423)
+..++.+.+.|... |.....+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|+
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5556677899999999999999999 9999999999999999999999999999
Q ss_pred CCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
+|+|+..|+||+|| ||. ++|.+++|++....
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 99999999999999 999 88999999986543
No 22
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-47 Score=389.43 Aligned_cols=342 Identities=18% Similarity=0.188 Sum_probs=264.7
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
..|..+++++.+...+...+...|+++|.++++.+..++++++++|||||||++|.++++..+..++ +++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHH
Confidence 3567777777776677666677899999999999999999999999999999999999998875433 8999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+++.+.++.. .+..++|+.+.. +.++|+|+||++|.+++......+.++++||+||||++.+
T Consensus 239 La~Q~~~~l~~~~~-----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d- 304 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG-----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD- 304 (1108)
T ss_dssp HHHHHHHHHHHHTS-----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS-
T ss_pred HHHHHHHHHHHHhC-----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc-
Confidence 99999999998753 677788877632 3369999999999998888777788999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccH--HHHHHHhccCCceeeeccccccccccce--------EEEEEeC----
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEI--RPVCKKFMQDPMEIYVDDEAKLTLHGLV--------QHYIKLS---- 271 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---- 271 (423)
.++...+..+...+++..|++++|||+|+.. ..++......+..+.............. .......
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchh
Confidence 5788888999999999999999999998753 3455555544444332221111110000 0000000
Q ss_pred ----------------------------------------hHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC
Q 014486 272 ----------------------------------------ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 311 (423)
Q Consensus 272 ----------------------------------------~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~ 311 (423)
...+...+...+......++||||+++..++.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 0222333444455556679999999999999999998653
Q ss_pred CCC---------------------------------------eEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCC
Q 014486 312 NFP---------------------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (423)
Q Consensus 312 ~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gl 352 (423)
++. +..+||++++.+|..+++.|++|.++|||||+++++|+
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 322 68899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCC--------CcchhhhcccccCCCC--CceEEEEEecCcccHHHHHHH
Q 014486 353 DIERVNIVINYDMPD--------SADTYLHRVGRAGRFG--TKGLAITFVSSASDSDILNQV 404 (423)
Q Consensus 353 d~~~~~~vi~~~~~~--------s~~~~~Q~~GR~~R~g--~~~~~~~~~~~~~~~~~~~~~ 404 (423)
|+|++++||+++.|+ |+.+|+||+||+||.| ..|.+++++++..+...+..+
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999877654 5566999999999999 679999999877665544443
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-46 Score=378.63 Aligned_cols=335 Identities=19% Similarity=0.249 Sum_probs=260.0
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
+|+++++++.+.+.+.+.||.+|+|+|.++++. +..++++++++|||||||+++.++++..+...+ .+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG--GKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC--SEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC--CEEEEEcCcHH
Confidence 488999999999999999999999999999998 788999999999999999999999987665222 39999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|++++++++... ++++..++|+....... + +.++|+|+||+++..++......+.++++||+||+|.+.+
T Consensus 80 La~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~- 152 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKI--GLRVAMATGDYDSKDEW--L--GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS- 152 (720)
T ss_dssp GHHHHHHHTGGGGGG--TCCEEEECSCSSCCCGG--G--GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-
T ss_pred HHHHHHHHHHHHHhc--CCEEEEecCCCCccccc--c--CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-
Confidence 999999999755443 78999999976544321 1 2369999999999998887666688999999999999976
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccce--EEEEEeC------hHHHHH
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV--QHYIKLS------ELEKNR 277 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~ 277 (423)
......+..++..++...|+|++|||+++. ..+.. ++.... +.... ......... ....... ......
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~-rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDW-RPVKLRRGVFYQGFVTWEDGSIDRFSSWEE 228 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCC-CSSEEEEEEEETTEEEETTSCEEECSSTTH
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCC-CCCcceEEEEeCCeeeccccchhhhhHHHH
Confidence 567777777777776689999999999862 33333 332111 11000 000000000 0000010 112233
Q ss_pred HHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC---------------------------------CCCeEEEcCCCCH
Q 014486 278 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC---------------------------------NFPSICIHSGMSQ 324 (423)
Q Consensus 278 ~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~~~~~~~ 324 (423)
.+.+.+. +++++||||++++.++.++..|.+. ...+..+|+++++
T Consensus 229 ~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~ 306 (720)
T 2zj8_A 229 LVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGR 306 (720)
T ss_dssp HHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCH
Confidence 4444443 4589999999999999999888753 1248899999999
Q ss_pred HHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----cc----CCCCcchhhhcccccCCCC--CceEEEEEecC
Q 014486 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD----MPDSADTYLHRVGRAGRFG--TKGLAITFVSS 394 (423)
Q Consensus 325 ~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~~~ 394 (423)
.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.++.+|.||+|||||.| ..|.|++++++
T Consensus 307 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 386 (720)
T 2zj8_A 307 DERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS 386 (720)
T ss_dssp HHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS
T ss_pred HHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecC
Confidence 99999999999999999999999999999999999998 66 5889999999999999988 47889999886
Q ss_pred cc
Q 014486 395 AS 396 (423)
Q Consensus 395 ~~ 396 (423)
.+
T Consensus 387 ~~ 388 (720)
T 2zj8_A 387 DD 388 (720)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-46 Score=367.92 Aligned_cols=328 Identities=20% Similarity=0.241 Sum_probs=196.9
Q ss_pred CCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 66 FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 66 ~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
..+|+|+|.++++.++.++++++++|||+|||++|++|++..+...+ .++++||++|+++|+.||.+.++++.... +
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~ 83 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-G 83 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-T
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-C
Confidence 44899999999999999999999999999999999999988765543 14489999999999999999999998765 7
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCcchhhccCCcHHHHHHHHHh----
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM---- 218 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~---- 218 (423)
+++..++|+.........+..+ ++|+|+||+++...+..... .+.++++||+||||++.++..+...+..+...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 8999999998766655555444 59999999999999988777 78999999999999998743333333233322
Q ss_pred CCCCceEEEEeccCCcc----HH-------HHHHHh------------------ccCCceeeecccc--ccccc------
Q 014486 219 TPHDKQVMMFSATLSKE----IR-------PVCKKF------------------MQDPMEIYVDDEA--KLTLH------ 261 (423)
Q Consensus 219 ~~~~~~~v~~SAT~~~~----~~-------~~~~~~------------------~~~~~~~~~~~~~--~~~~~------ 261 (423)
..+..+++++|||++.. .. .+...+ ...+......... .....
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 24568899999999532 11 111111 1111100000000 00000
Q ss_pred ---------cce--EEEEE-------------------------------------------------------------
Q 014486 262 ---------GLV--QHYIK------------------------------------------------------------- 269 (423)
Q Consensus 262 ---------~~~--~~~~~------------------------------------------------------------- 269 (423)
... .....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 000 00000
Q ss_pred ---------------------------------------------eChHHHHHHHHHHHHh----hcCCcEEEEEcChhh
Q 014486 270 ---------------------------------------------LSELEKNRKLNDLLDA----LDFNQVVIFVKSVSR 300 (423)
Q Consensus 270 ---------------------------------------------~~~~~~~~~l~~ll~~----~~~~~~ivf~~~~~~ 300 (423)
.....|...+.+++.. .+..++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 0012244445555543 356899999999999
Q ss_pred HHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHhhhc-CCccEEEEcCccccCCCCCCCCEEEEccCCC
Q 014486 301 AAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPD 367 (423)
Q Consensus 301 ~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~ 367 (423)
++.+.+.|... |.....+||++++.+|..+++.|++ |+++|||||+++++|+|+|++++||+|++|+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~ 482 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 482 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCS
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999875 4555667888999999999999999 9999999999999999999999999999999
Q ss_pred CcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 368 SADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 368 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
|+..|+||+|| ||. ++|.++++++....
T Consensus 483 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 483 NVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp CHHHHHHC----------CCEEEEESCHHH
T ss_pred CHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 99999999999 998 78999999987544
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.5e-46 Score=372.91 Aligned_cols=337 Identities=20% Similarity=0.238 Sum_probs=256.3
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
..+|+++++++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||+++.++++..+...+ .+++|++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~il~i~P~ 84 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--GKAIYVTPL 84 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--SEEEEECSC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC--CeEEEEeCc
Confidence 35699999999999999999999999999999999 778899999999999999999999987655222 399999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|+++.++.+... ++++...+|+....... +. .++|+|+||++|..++......+.++++||+||+|.+.
T Consensus 85 r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~--~~--~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 85 RALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAW--LK--NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp HHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGG--GG--GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred HHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhh--cC--CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 99999999999655432 77888888876544321 22 36999999999999888766668899999999999987
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecccccccccc---------ceEEEEE-----
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG---------LVQHYIK----- 269 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----- 269 (423)
+ ..+...+..+...++ ..|+|++|||+++. ..+... +..+. +..... ...... .......
T Consensus 159 ~-~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~-l~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 159 D-PERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKW-LGAEP-VATNWR-PVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp C-TTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHH-HTCEE-EECCCC-SSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred C-cccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHH-hCCCc-cCCCCC-CCCceEEEEecCCcccceeeecCcchh
Confidence 5 566667777666655 78999999999852 333333 32211 110000 000000 0000000
Q ss_pred --eC-hHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCC----------------------------------
Q 014486 270 --LS-ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN---------------------------------- 312 (423)
Q Consensus 270 --~~-~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~---------------------------------- 312 (423)
.. .......+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 00 1233344444442 46899999999999999999988642
Q ss_pred --CCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----cc-------CCCCcchhhhccccc
Q 014486 313 --FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD-------MPDSADTYLHRVGRA 379 (423)
Q Consensus 313 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~ 379 (423)
..+..+||+++..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|..+|.||+|||
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999999 88 799999999999999
Q ss_pred CCCCC--ceEEEEEecCccc
Q 014486 380 GRFGT--KGLAITFVSSASD 397 (423)
Q Consensus 380 ~R~g~--~~~~~~~~~~~~~ 397 (423)
||.|. .|.|++++++.++
T Consensus 391 GR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp CCTTTCSCEEEEEECSCGGG
T ss_pred CCCCCCCCceEEEEeCCchH
Confidence 99884 7899999876543
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-46 Score=376.56 Aligned_cols=334 Identities=17% Similarity=0.261 Sum_probs=253.4
Q ss_pred CCcCCC--CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 47 GFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 47 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
+|++++ +++.+.+.+.+.||.+|+|+|.++++.++.++++++++|||||||+++.++++..+..+ .+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcH
Confidence 477788 89999999999999999999999999999999999999999999999999999876532 3899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+++.++.+.. . ++++..++|+....... + +.++|+|+||+++..++......+.++++||+||+|.+.+
T Consensus 79 ~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~ 152 (702)
T 2p6r_A 79 ALAGEKYESFKKWEK-I-GLRIGISTGDYESRDEH--L--GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS 152 (702)
T ss_dssp HHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSSC--S--TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC
T ss_pred HHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchhh--c--cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC
Confidence 999999999865433 2 78899999877554321 1 2369999999999998888666688999999999999876
Q ss_pred cCCcHHHHHHHHHh---CCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccc-----cceEEEEEe-----C
Q 014486 205 SLDMRRDVQEIFKM---TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH-----GLVQHYIKL-----S 271 (423)
Q Consensus 205 ~~~~~~~~~~~~~~---~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~ 271 (423)
......+..+... .++..|++++|||+++ ...+.. ++..+. +..... ..... .....+... .
T Consensus 153 -~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 153 -EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR-PVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp -TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC-SSCEEEEEECSSEEEEEETTEEEEE
T ss_pred -CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC-CccceEEEeeCCeeeccCcchhhhh
Confidence 4555555544433 3568999999999986 333433 333221 111000 00000 000011110 0
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhC------------------------------CCCeEEEcCC
Q 014486 272 ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------------------------------NFPSICIHSG 321 (423)
Q Consensus 272 ~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~~~~ 321 (423)
.......+.+.+. +++++||||++++.+..+++.|.+. +..+..+||+
T Consensus 228 ~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 228 RVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp ECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 0013344444443 4689999999999999999888753 1357789999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----cc---CCCCcchhhhcccccCCCC--CceEEEEEe
Q 014486 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YD---MPDSADTYLHRVGRAGRFG--TKGLAITFV 392 (423)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~~~~~~~~ 392 (423)
+++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.|+.+|.||+||+||.| ..|.|++++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 55 7899999999999999988 478999998
Q ss_pred cCcc
Q 014486 393 SSAS 396 (423)
Q Consensus 393 ~~~~ 396 (423)
++.+
T Consensus 386 ~~~~ 389 (702)
T 2p6r_A 386 GKRD 389 (702)
T ss_dssp CGGG
T ss_pred cCcc
Confidence 8654
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-45 Score=378.40 Aligned_cols=330 Identities=21% Similarity=0.245 Sum_probs=205.6
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCC--CeEEEEEecChHHHHHHHHHHHHHhccC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYL 141 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~ 141 (423)
.|+..|+++|.++++.++.|+++++++|||+|||++|+++++..+...+. +.++||++|+++|+.||.++++++....
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 36779999999999999999999999999999999999999988766431 3489999999999999999999998765
Q ss_pred CCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC-CCCCccEEEEcCcchhhccCCcHHHHHHHHHh--
Q 014486 142 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM-- 218 (423)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~-- 218 (423)
++++..++|+.........+..+ ++|+|+||++|...+..... .+.++++||+||||++.....+...+..+...
T Consensus 324 -~~~v~~~~G~~~~~~~~~~~~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 324 -GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp -TCCEEEECCC-----CCHHHHHH-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred -CceEEEEECCcchhhHHHHhccC-CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 78999999998666544444444 59999999999998887766 68889999999999998743444444344332
Q ss_pred --CCCCceEEEEeccCCcc-----------HHHHH------------------HHhccCCceeeeccccccc--------
Q 014486 219 --TPHDKQVMMFSATLSKE-----------IRPVC------------------KKFMQDPMEIYVDDEAKLT-------- 259 (423)
Q Consensus 219 --~~~~~~~v~~SAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~-------- 259 (423)
..+..+++++|||+... +..+. ..+...+............
T Consensus 402 ~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 25568899999999531 11111 1111111111100000000
Q ss_pred --------c-ccc--------eEEEEEe----------------------------------------------------
Q 014486 260 --------L-HGL--------VQHYIKL---------------------------------------------------- 270 (423)
Q Consensus 260 --------~-~~~--------~~~~~~~---------------------------------------------------- 270 (423)
. ... .......
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0 000 0000000
Q ss_pred ------------------------------------------------ChHHHHHHHHHHHHh----hcCCcEEEEEcCh
Q 014486 271 ------------------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSV 298 (423)
Q Consensus 271 ------------------------------------------------~~~~~~~~l~~ll~~----~~~~~~ivf~~~~ 298 (423)
....|...+.+++.. .++.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 011233444555554 2468999999999
Q ss_pred hhHHHHHHHHHhC------------CCCeEEEcCCCCHHHHHHHHHhhhc-CCccEEEEcCccccCCCCCCCCEEEEccC
Q 014486 299 SRAAELNKLLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDM 365 (423)
Q Consensus 299 ~~~~~l~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~ili~T~~~~~Gld~~~~~~vi~~~~ 365 (423)
..++.+.+.|... |.....+||++++.+|.++++.|++ |+++|||||+++++|+|+|++++||+|++
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESC
T ss_pred HHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCC
Confidence 9999999999986 5556667889999999999999999 99999999999999999999999999999
Q ss_pred CCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 366 PDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 366 ~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
|+|+..|+||+|| ||. ..|.++++++....
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp CSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 9999999999999 998 77889988876443
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-45 Score=354.34 Aligned_cols=324 Identities=19% Similarity=0.285 Sum_probs=247.1
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+. ..+.++||++|+++|+.||.+++.++... +..++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheE
Confidence 7999999999999998 9999999999999999998887765 22238999999999999999999998632 355888
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
.++|+.........+.+ ++|+|+||+.+...+....+.+.++++||+||||++.+. .....+...+....+..++++
T Consensus 85 ~~~g~~~~~~~~~~~~~--~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~-~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWAR--AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN-YAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EECSCSCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT-CHHHHHHHHHHHHCSSCCEEE
T ss_pred EeeCCcchhhhhhhccC--CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC-CcHHHHHHHHHhcCCCCeEEE
Confidence 99998876655444433 599999999999988887778899999999999999863 344444455555566788999
Q ss_pred EeccCCccHHH---HHHHhccCCceeeeccccc--cccccceEEEE--Ee------------------------------
Q 014486 228 FSATLSKEIRP---VCKKFMQDPMEIYVDDEAK--LTLHGLVQHYI--KL------------------------------ 270 (423)
Q Consensus 228 ~SAT~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~------------------------------ 270 (423)
+|||+...... ++..+.............. ........... ..
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999854332 2222211111110000000 00000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 014486 271 -------------------------------------------------------------------------------- 270 (423)
Q Consensus 271 -------------------------------------------------------------------------------- 270 (423)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------ChHHHHHHHHHHHHh----hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcC--------
Q 014486 271 ------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS-------- 320 (423)
Q Consensus 271 ------------------~~~~~~~~l~~ll~~----~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~-------- 320 (423)
....|...+.+++.. .+++++||||+++..++.+++.|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 122344555666655 36789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHH
Q 014486 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 399 (423)
Q Consensus 321 ~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~ 399 (423)
+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+ |.++.++.+...++
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 99999988765443
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-44 Score=367.19 Aligned_cols=320 Identities=20% Similarity=0.235 Sum_probs=251.9
Q ss_pred hCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
..+| .|+++|.++++.+..++++++++|||+|||+++.++++..+..+ .++||++|+++|+.|+++.+.++..
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC---
Confidence 3466 59999999999999999999999999999999999888776433 3999999999999999999998763
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCC
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 222 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~ 222 (423)
++..++|+..... ..+|+|+||++|..++.+....+.++++||+||+|++.+ ..+...+..+...++..
T Consensus 155 --~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 --DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLPDK 223 (1010)
T ss_dssp --CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHSCTT
T ss_pred --CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchhHHHHHHHHhcCCC
Confidence 6778888776432 369999999999998887777889999999999999987 56778888888999999
Q ss_pred ceEEEEeccCCccHH--HHHHHhccCCceeeeccccccccccceEEEEE---------eCh-------------------
Q 014486 223 KQVMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK---------LSE------------------- 272 (423)
Q Consensus 223 ~~~v~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------- 272 (423)
.|++++|||+++... ..+......+..+......... +..++.. ...
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~p---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP---LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSC---EEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc---ceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999987532 3333333333333222111110 1111110 000
Q ss_pred ---------------------------HHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCC-----------
Q 014486 273 ---------------------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP----------- 314 (423)
Q Consensus 273 ---------------------------~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~----------- 314 (423)
......+...+......++||||+++..++.+++.|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 111223444445556679999999999999999999775442
Q ss_pred ----------------------------eEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----
Q 014486 315 ----------------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN---- 362 (423)
Q Consensus 315 ----------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~---- 362 (423)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred ccC----CCCcchhhhcccccCCCCC--ceEEEEEecCcccHHHHHH
Q 014486 363 YDM----PDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQ 403 (423)
Q Consensus 363 ~~~----~~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~~~~~~~~~~ 403 (423)
|+. |.++.+|.||+||+||.|+ .|.+++++++..+...+..
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 998 8899999999999999997 4999999987655544433
No 30
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.1e-44 Score=373.75 Aligned_cols=320 Identities=20% Similarity=0.320 Sum_probs=254.8
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|| +|+|+|.++++.++.|+++++++|||||||++++++++..+.. ++++||++|+++|+.|+++.++++. ..+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~--~~~ 148 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLA--DEK 148 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTS--CTT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhh--CCC
Confidence 577 6999999999999999999999999999999888888777633 3389999999999999999999976 348
Q ss_pred ceEEEEEcCcch---HHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc----------CCcHH
Q 014486 144 IKVAVFYGGVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRR 210 (423)
Q Consensus 144 ~~~~~~~~~~~~---~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~----------~~~~~ 210 (423)
+++..++|+.+. ..+...+.++.++|+|+||++|.+++.. +.+.++++||+||||++..+ .+|..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999987 5566677777689999999999887664 55678999999999987641 35555
Q ss_pred H-HHHHHHhCC-----------CCceEEEEecc-CCccHHH-HHHHhccCCceeeeccccccccccceEEEEEeChHHHH
Q 014486 211 D-VQEIFKMTP-----------HDKQVMMFSAT-LSKEIRP-VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN 276 (423)
Q Consensus 211 ~-~~~~~~~~~-----------~~~~~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (423)
. +..++..++ ...|++++||| .|..+.. .....+. +.+... ......+.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~-~~~~~~i~~~~~~~---~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRISS---RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC-CCCCCCEEEEEESC---CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC-CCCcCCceeEEEec---CHH
Confidence 5 777777666 78899999999 5555432 2232222 111111 12233344444433 355
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeE-EEcCCCCHHHHHHHHHhhhcCCccEEEE----cCccccC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRG 351 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~ili~----T~~~~~G 351 (423)
..+..++... ++++||||++++.++.++..|...|+++. .+|| +|.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 6667777774 48999999999999999999999999998 8999 2555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEccCCC---------------------------------------------------------------
Q 014486 352 IDIER-VNIVINYDMPD--------------------------------------------------------------- 367 (423)
Q Consensus 352 ld~~~-~~~vi~~~~~~--------------------------------------------------------------- 367 (423)
+|+|+ +++||+||+|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------CcchhhhcccccCCCCC----ceEEEEEecCcccHHHHHHHHHHHh
Q 014486 368 ---------SADTYLHRVGRAGRFGT----KGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 368 ---------s~~~~~Q~~GR~~R~g~----~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++.+|+||+||+||.|. .|..++++ ++...++.|++.+.
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 77789999999999653 45556665 57778888888886
No 31
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.5e-43 Score=340.36 Aligned_cols=323 Identities=19% Similarity=0.227 Sum_probs=249.5
Q ss_pred hCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 63 ~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
..|+ +|+|+|..+++.++.|+ |..++||+|||++|++|++.....+ +.++|++||++||.|.++++..+....
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g---~~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4699 99999999999999998 9999999999999999998554432 379999999999999999999998887
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCcchhhccC---------
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL--------- 206 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~------~~~~~~~~~vVvDE~h~~~~~~--------- 206 (423)
++++.++.||.+........ + ++|+|+||+.| ++++..+ ...+..++++|+||||+++.+.
T Consensus 152 gl~v~~i~gg~~~~~r~~~~--~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAY--A-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHhc--C-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 89999999998765443332 3 59999999999 6666543 2456889999999999998323
Q ss_pred ------CcHHHHHHHHHhCC---------CCceEE-----------------EEeccCCcc---HHHHHHH--hcc-CCc
Q 014486 207 ------DMRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSKE---IRPVCKK--FMQ-DPM 248 (423)
Q Consensus 207 ------~~~~~~~~~~~~~~---------~~~~~v-----------------~~SAT~~~~---~~~~~~~--~~~-~~~ 248 (423)
++...+..+...++ +.+|+. ++|||.+.. +...++. ++. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 26778888888886 356776 889997642 2222111 111 111
Q ss_pred ee------------------------------------eecccc------------------------------------
Q 014486 249 EI------------------------------------YVDDEA------------------------------------ 256 (423)
Q Consensus 249 ~~------------------------------------~~~~~~------------------------------------ 256 (423)
.+ .+....
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 11 000000
Q ss_pred ---------ccccccc-eEEEEEeChHHHHHHHHHHHHh--hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCH
Q 014486 257 ---------KLTLHGL-VQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324 (423)
Q Consensus 257 ---------~~~~~~~-~~~~~~~~~~~~~~~l~~ll~~--~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 324 (423)
..+.... ....+.....+|...+...+.. ..+.++||||++++.++.++..|...|+++..+|+++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 0000000 0113445677788888877754 256789999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhcCCccEEEEcCccccCCCCC--------CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 325 EERLTRYKGFKEGNKRILVATDLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 325 ~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
.+|..+...|+.| .|+|||++++||+|++ ++.+||+++.|.|...|.||+||+||.|.+|.++.|++..+
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8877665555554 6999999999999999 78899999999999999999999999999999999998765
Q ss_pred c
Q 014486 397 D 397 (423)
Q Consensus 397 ~ 397 (423)
+
T Consensus 547 ~ 547 (844)
T 1tf5_A 547 E 547 (844)
T ss_dssp S
T ss_pred H
Confidence 4
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1e-44 Score=365.30 Aligned_cols=321 Identities=20% Similarity=0.245 Sum_probs=221.4
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC---CCeEEEEEecChHHHHHH-HHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQI-CHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~-~~~~~~~~~~~~~ 143 (423)
.|+|+|.++++.++.++++++++|||+|||++|+++++..+.... .+.++||++|+++|+.|| .++++++... +
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~ 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--W 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--T
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--C
Confidence 799999999999999999999999999999999999987654321 123889999999999999 9999998754 4
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHH------hcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHH
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA------RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 217 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~------~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~ 217 (423)
+++..++|+.........+... ++|+|+||++|...+ ....+.+.++++||+||||++.....+...+..+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~-~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHS-CSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcC-CCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 7999999987766554444444 699999999999877 444567789999999999988653333333332222
Q ss_pred h-------------CCCCceEEEEeccCCcc-------H----HHHHHHhccCCceeeeccccc--cccccceEEEEEeC
Q 014486 218 M-------------TPHDKQVMMFSATLSKE-------I----RPVCKKFMQDPMEIYVDDEAK--LTLHGLVQHYIKLS 271 (423)
Q Consensus 218 ~-------------~~~~~~~v~~SAT~~~~-------~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (423)
. ..+.++++++|||+... . ..+...+.............. .........+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 12567899999999863 1 111111111000000000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 014486 272 -------------------------------------------------------------------------------- 271 (423)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (423)
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------hHHHHHHHHHHHHh----hc-CCcE
Q 014486 272 -------------------------------------------------------ELEKNRKLNDLLDA----LD-FNQV 291 (423)
Q Consensus 272 -------------------------------------------------------~~~~~~~l~~ll~~----~~-~~~~ 291 (423)
...|...+.+++.. .+ .+++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00111112222322 13 6899
Q ss_pred EEEEcChhhHHHHHHHHHhC------CCCeEEEcCC--------CCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 292 VIFVKSVSRAAELNKLLVEC------NFPSICIHSG--------MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
||||++++.++.+++.|... |+++..+||+ |++.+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v 483 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKEC 483 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccC
Confidence 99999999999999999987 8999999999 999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCcchhhhcccccCCCCCceEEEEEec
Q 014486 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 358 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
++||+|++|+|+..|+||+||+||.| +.++++..
T Consensus 484 ~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~ 517 (699)
T 4gl2_A 484 NIVIRYGLVTNEIAMVQARGRARADE--STYVLVAH 517 (699)
T ss_dssp CCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEe
Confidence 99999999999999999999987765 34444444
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.8e-43 Score=365.19 Aligned_cols=324 Identities=17% Similarity=0.263 Sum_probs=248.7
Q ss_pred HHHHh-CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 59 RAIVD-SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 59 ~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
+.+.+ +||. | ++|.++++.++.|+++++.+|||||||+ +.+|++..+... ++++||++|+++|+.|+++.++++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 44444 6998 9 9999999999999999999999999998 777887766543 348999999999999999999999
Q ss_pred hccCCCc----eEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 138 STYLPDI----KVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 138 ~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
.... ++ ++..++|+.+...+ ...+.+ ++|+|+||++|..++.. +.++++||+||||++.+ +..
T Consensus 123 ~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~~~ 192 (1054)
T 1gku_B 123 AEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---ASK 192 (1054)
T ss_dssp HTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---STH
T ss_pred Hhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---ccc
Confidence 8765 66 89999999887664 233344 69999999999987664 66899999999999976 456
Q ss_pred HHHHHHHhC-----------CCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHH
Q 014486 211 DVQEIFKMT-----------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKL 279 (423)
Q Consensus 211 ~~~~~~~~~-----------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (423)
.+..++..+ +...|++++|||++.. ......++..+..+.+.... .....+.+.+. ...+...+
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L 267 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTL 267 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTT
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHH
Confidence 666666665 3467899999999887 43333333322222222211 12223333333 23455566
Q ss_pred HHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEE----cCccccCCCCC
Q 014486 280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGIDIE 355 (423)
Q Consensus 280 ~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~----T~~~~~Gld~~ 355 (423)
..++... ++++||||++++.++.+++.|+.. +++..+||++. .+++.|++|+.+|||| |+++++|+|+|
T Consensus 268 ~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 268 SSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp HHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred HHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 6777665 478999999999999999999988 99999999983 6788999999999999 89999999999
Q ss_pred CC-CEEEEccCC--------------------------------------------------------------------
Q 014486 356 RV-NIVINYDMP-------------------------------------------------------------------- 366 (423)
Q Consensus 356 ~~-~~vi~~~~~-------------------------------------------------------------------- 366 (423)
+| ++||+++.|
T Consensus 341 ~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (1054)
T 1gku_B 341 ERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGE 420 (1054)
T ss_dssp TTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTE
T ss_pred CcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecc
Confidence 96 999999999
Q ss_pred ---CCcchhhhcccccCCCCCce--EEEEEecCcccHHHHHHHHHHHhc
Q 014486 367 ---DSADTYLHRVGRAGRFGTKG--LAITFVSSASDSDILNQVSKFMFL 410 (423)
Q Consensus 367 ---~s~~~~~Q~~GR~~R~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 410 (423)
.++..|+||+||+||.|..| .+++++.. ++...+..+++.++.
T Consensus 421 ~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~-~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 421 VIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE-DDSELLSAFIERAKL 468 (1054)
T ss_dssp EEEECHHHHHHHHHTTCCEETTEECCEEEEEEC-SCHHHHHHHHHHHHT
T ss_pred eecCcHHHHhhhhchhhhccCCCCceEEEEEEe-cCHHHHHHHHHHHhh
Confidence 78999999999999987765 36666654 467788888888874
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-42 Score=353.39 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=240.7
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
+| .|+++|.++++.++.++++++.+|||+|||++|++++......+ .++||++|+++|+.|+++.++++. +++
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~---~~~ 109 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETF---DDV 109 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHc---CCC
Confidence 45 58999999999999999999999999999999988887765433 389999999999999999888754 367
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCce
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 224 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 224 (423)
++..++|+.... +..+|+|+||++|...+......+.++++||+||||++.+ .++...+..+...+++..+
T Consensus 110 ~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 110 NIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp CEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCCHHHHHHHSCTTCE
T ss_pred eEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHHHHHHHHhcccCCC
Confidence 889999987543 3369999999999998887777788999999999999887 5677778888889999999
Q ss_pred EEEEeccCCccHHHHHHHhc---cCCceeeeccccccccccce------E------------------------------
Q 014486 225 VMMFSATLSKEIRPVCKKFM---QDPMEIYVDDEAKLTLHGLV------Q------------------------------ 265 (423)
Q Consensus 225 ~v~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~------------------------------ 265 (423)
++++|||+++.. .+...+. ..+..+........+..... .
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 999999998653 2322221 11211111110000000000 0
Q ss_pred ------------------------------------------------------EEEEeChHHHHHHHHHHHHhhcCCcE
Q 014486 266 ------------------------------------------------------HYIKLSELEKNRKLNDLLDALDFNQV 291 (423)
Q Consensus 266 ------------------------------------------------------~~~~~~~~~~~~~l~~ll~~~~~~~~ 291 (423)
+........+...+...+......++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 00000112234456667777777899
Q ss_pred EEEEcChhhHHHHHHHHHhCCC---------------------------------------CeEEEcCCCCHHHHHHHHH
Q 014486 292 VIFVKSVSRAAELNKLLVECNF---------------------------------------PSICIHSGMSQEERLTRYK 332 (423)
Q Consensus 292 ivf~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~ 332 (423)
||||++++.++.++..|...++ .+..+|+++++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999987665 4789999999999999999
Q ss_pred hhhcCCccEEEEcCccccCCCCCCCCEEEEccCCC---------CcchhhhcccccCCCC--CceEEEEEec
Q 014486 333 GFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD---------SADTYLHRVGRAGRFG--TKGLAITFVS 393 (423)
Q Consensus 333 ~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~~~~~~~~~ 393 (423)
.|.+|.++|||||+++++|+|+|+ ..||+++.++ |+..|+||+|||||.| ..|.+++++.
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999999999999999 6667666665 9999999999999998 4577777773
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-42 Score=345.03 Aligned_cols=318 Identities=22% Similarity=0.239 Sum_probs=236.4
Q ss_pred HHHHHHHHhCCCCCCChhhhhcccccccC------CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHH
Q 014486 55 PELLRAIVDSGFEHPSEVQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (423)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (423)
+.+.+.+...+| .|+++|.++++.++.+ .++++++|||||||++++++++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 444555667899 8999999999998875 5899999999999999999999876533 38999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 129 QICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 129 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+++.+.++.... ++++..++|+....... ..+.++.++|+|+||+.+.. ...+.++++||+||+|++..
T Consensus 432 Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~- 504 (780)
T 1gm5_A 432 QHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGV- 504 (780)
T ss_dssp HHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhH-
Confidence 9999999988665 78999999998765543 34556668999999987754 45678999999999998743
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHH-
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD- 284 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~- 284 (423)
..+ ..+.......+++++|||+.+...... .........+... ......+.... .... +...+...+.
T Consensus 505 -~qr----~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~-p~~r~~i~~~~--~~~~-~~~~l~~~i~~ 573 (780)
T 1gm5_A 505 -KQR----EALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEM-PPGRKEVQTML--VPMD-RVNEVYEFVRQ 573 (780)
T ss_dssp --------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCC-CSSCCCCEECC--CCSS-THHHHHHHHHH
T ss_pred -HHH----HHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeecc-CCCCcceEEEE--eccc-hHHHHHHHHHH
Confidence 111 112223346889999999877654432 2222111111111 11111111111 1121 2223333333
Q ss_pred hh-cCCcEEEEEcChh--------hHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCC
Q 014486 285 AL-DFNQVVIFVKSVS--------RAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGI 352 (423)
Q Consensus 285 ~~-~~~~~ivf~~~~~--------~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gl 352 (423)
.. .+++++|||+..+ .+..+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 22 4578999999664 46788888887 477889999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCC-CcchhhhcccccCCCCCceEEEEEecC
Q 014486 353 DIERVNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSS 394 (423)
Q Consensus 353 d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 394 (423)
|+|++++||+++.|+ +...+.||+||+||.|++|.|++++++
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 999999999999996 788999999999999999999999874
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.7e-41 Score=347.48 Aligned_cols=323 Identities=18% Similarity=0.171 Sum_probs=247.5
Q ss_pred CCCCHHHHHHHHh-CCCCCCChhhhhccccccc----CC--ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 51 FLLKPELLRAIVD-SGFEHPSEVQHECIPQAIL----GM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 51 ~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~----~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
++.++...+.+.+ .+| .+||+|.++++.++. ++ ++++++|||+|||++++.+++.....+ .+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g---~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC---CeEEEEech
Confidence 4566666666654 477 479999999999987 55 899999999999999988887765543 389999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcc
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECD 200 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h 200 (423)
++|+.|+++.+.+..... ++++..+++..+.... ...+.++.++|+|+||+.+. ....+.++++||+||+|
T Consensus 662 ~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGG
T ss_pred HHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechH
Confidence 999999999999876654 5788888876654443 33455666899999998663 34668899999999999
Q ss_pred hhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHH
Q 014486 201 KMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLN 280 (423)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (423)
++.. .....++.++...+++++|||+.+............+..+...+ .....+.......... ....
T Consensus 736 ~~g~------~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~---~~r~~i~~~~~~~~~~---~i~~ 803 (1151)
T 2eyq_A 736 RFGV------RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP---ARRLAVKTFVREYDSM---VVRE 803 (1151)
T ss_dssp GSCH------HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC---CBCBCEEEEEEECCHH---HHHH
T ss_pred hcCh------HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC---CCccccEEEEecCCHH---HHHH
Confidence 8632 22334444556789999999998776555444333322222111 1112222222222222 2222
Q ss_pred HHHHhh-cCCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC
Q 014486 281 DLLDAL-DFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 357 (423)
Q Consensus 281 ~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~ 357 (423)
.++... .+++++|||++++.++.+++.|++. +..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 333332 4689999999999999999999987 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEccC-CCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 358 NIVINYDM-PDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 358 ~~vi~~~~-~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
++||+++. ++++.+|.||+||+||.|+.|.|++++.+.
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999988 578999999999999999999999998753
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.1e-42 Score=333.01 Aligned_cols=310 Identities=16% Similarity=0.182 Sum_probs=231.1
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceE
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 146 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 146 (423)
..|+|+|.++++.++.++++++++|||+|||++++.++...+...+ .++||++|+++|+.||.++++++... ++..+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF-SHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSS-CGGGE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcC-Cccce
Confidence 3899999999999999999999999999999999888877654322 28999999999999999999887543 46788
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
..++++.....+ ..+..+|+|+||+.+.. .....+.++++||+||+|++.. ..+..+++.+.+..+++
T Consensus 189 ~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 189 KKIGGGASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EECGGGCCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTTCCEEE
T ss_pred EEEecCCccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcccCcEEE
Confidence 888888665443 23346999999997653 2334567899999999998864 45667778887888999
Q ss_pred EEeccCCccHHHHHH--HhccCCceeeeccc-----cccccccceEEEEEeCh---------------------HHHHHH
Q 014486 227 MFSATLSKEIRPVCK--KFMQDPMEIYVDDE-----AKLTLHGLVQHYIKLSE---------------------LEKNRK 278 (423)
Q Consensus 227 ~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------------------~~~~~~ 278 (423)
++|||+++....... .++. +..+..... ...............+. ..+...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHH
Confidence 999999766422111 1111 211111111 00000011111111111 123334
Q ss_pred HHHHHHhh---cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc-CccccCCCC
Q 014486 279 LNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDI 354 (423)
Q Consensus 279 l~~ll~~~---~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T-~~~~~Gld~ 354 (423)
+.+++... ...++|||++ .+++..+++.|.+.+.++..+||+++..+|..+++.|++|+.+||||| +++++|+|+
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi 414 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV 414 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc
Confidence 45555444 3344555555 899999999999988899999999999999999999999999999999 999999999
Q ss_pred CCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEec
Q 014486 355 ERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 393 (423)
Q Consensus 355 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 393 (423)
|++++||++++|+++..|.|++||+||.|+.+..+++++
T Consensus 415 p~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 415 KNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999998775555554
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.2e-40 Score=323.59 Aligned_cols=321 Identities=17% Similarity=0.204 Sum_probs=226.7
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|. +|+++|..+++.++.|+ +..++||+|||++|++|++.....+ +.++|++||++||.|.++.+..+.... ++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g---~~vlVltPTreLA~Q~~e~~~~l~~~l-gl 144 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAENNRPLFEFL-GL 144 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTS---SCCEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcC---CcEEEEcCCHHHHHHHHHHHHHHHHhc-CC
Confidence 54 89999999999999987 9999999999999999998654432 378999999999999999999998887 89
Q ss_pred eEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCCCccEEEEcCcchhhccC-----------
Q 014486 145 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLESL----------- 206 (423)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~~~~~vVvDE~h~~~~~~----------- 206 (423)
++..++||.+...... ..+ ++|+|+||+.| +++++.+. ..+.+++++|+||||+++.+.
T Consensus 145 ~v~~i~GG~~~~~r~~--~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~ 221 (853)
T 2fsf_A 145 TVGINLPGMPAPAKRE--AYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPA 221 (853)
T ss_dssp CEEECCTTCCHHHHHH--HHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-
T ss_pred eEEEEeCCCCHHHHHH--hcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCC
Confidence 9999999987653332 223 59999999999 77776543 456889999999999998422
Q ss_pred ----CcHHHHHHHHHhCCC--------------------CceEE------------------------EEeccCCccHHH
Q 014486 207 ----DMRRDVQEIFKMTPH--------------------DKQVM------------------------MFSATLSKEIRP 238 (423)
Q Consensus 207 ----~~~~~~~~~~~~~~~--------------------~~~~v------------------------~~SAT~~~~~~~ 238 (423)
++...+..+...+++ .+|+. ++|||.+.....
T Consensus 222 ~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~ 301 (853)
T 2fsf_A 222 EDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHH 301 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHH
Confidence 245566666666653 34443 788886532111
Q ss_pred H---HH--Hhc---------------------------------cCC----ceeeecccc--------------------
Q 014486 239 V---CK--KFM---------------------------------QDP----MEIYVDDEA-------------------- 256 (423)
Q Consensus 239 ~---~~--~~~---------------------------------~~~----~~~~~~~~~-------------------- 256 (423)
+ ++ .++ +.+ ..+.+..+.
T Consensus 302 i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~G 381 (853)
T 2fsf_A 302 VTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAG 381 (853)
T ss_dssp -------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhc
Confidence 1 00 000 000 001110000
Q ss_pred --------------------------ccccccceEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHH
Q 014486 257 --------------------------KLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLL 308 (423)
Q Consensus 257 --------------------------~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L 308 (423)
......-....+......|...+.+.+... .+.++||||++++.++.+++.|
T Consensus 382 mTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 382 MTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp EECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 000000011234567778888888877543 4678999999999999999999
Q ss_pred HhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCC-------------------------------
Q 014486 309 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------- 357 (423)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~------------------------------- 357 (423)
+..|+++..+|++....++..+..+|+.| .|+|||++++||+|++..
T Consensus 462 ~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (853)
T 2fsf_A 462 TKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDA 539 (853)
T ss_dssp HHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhH
Confidence 99999999999999888888888888877 699999999999999874
Q ss_pred ------CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 358 ------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 358 ------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
.+||+++.|.|...|.||+||+||.|.+|.++.|++..++
T Consensus 540 V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 540 VLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999987554
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=8.5e-40 Score=317.91 Aligned_cols=322 Identities=21% Similarity=0.241 Sum_probs=250.8
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|+ +|+++|..+++.++.|+ |..++||+|||++|++|++.....+ ..++|++||+.||.|.++++..+.... +
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~l-G 180 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFL-G 180 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 478 99999999999999987 9999999999999999997654433 279999999999999999999998887 8
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcC------CCCCCCccEEEEcCcchhhcc-----------
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES----------- 205 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~------~~~~~~~~~vVvDE~h~~~~~----------- 205 (423)
+++.++.||.+........ + ++|+|+||+.| ++++..+ ...+..+.++|+||||+++.+
T Consensus 181 Lsv~~i~gg~~~~~r~~~y--~-~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~ 257 (922)
T 1nkt_A 181 LQVGVILATMTPDERRVAY--N-ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGP 257 (922)
T ss_dssp CCEEECCTTCCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEE
T ss_pred CeEEEEeCCCCHHHHHHhc--C-CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCC
Confidence 9999999998765443332 3 59999999999 7777654 355678999999999999842
Q ss_pred ----CCcHHHHHHHHHhCC---------CCceEE-----------------EEeccCCccHHH---HHHH--hcc-CCce
Q 014486 206 ----LDMRRDVQEIFKMTP---------HDKQVM-----------------MFSATLSKEIRP---VCKK--FMQ-DPME 249 (423)
Q Consensus 206 ----~~~~~~~~~~~~~~~---------~~~~~v-----------------~~SAT~~~~~~~---~~~~--~~~-~~~~ 249 (423)
.++...+..+...++ +.+|+. ++|||.+..... .++. ++. +..+
T Consensus 258 ~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dY 337 (922)
T 1nkt_A 258 ADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDY 337 (922)
T ss_dssp CCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTE
T ss_pred CCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccce
Confidence 247788899999997 678888 889998753222 1111 111 1100
Q ss_pred ee-------ec-----------------------------ccc-------------------------------------
Q 014486 250 IY-------VD-----------------------------DEA------------------------------------- 256 (423)
Q Consensus 250 ~~-------~~-----------------------------~~~------------------------------------- 256 (423)
+. ++ .+.
T Consensus 338 iV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~ 417 (922)
T 1nkt_A 338 IVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYK 417 (922)
T ss_dssp EECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred eeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhC
Confidence 00 00 000
Q ss_pred --------ccccccc-eEEEEEeChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHH
Q 014486 257 --------KLTLHGL-VQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQE 325 (423)
Q Consensus 257 --------~~~~~~~-~~~~~~~~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 325 (423)
..+.... ....+......|...+...+... .+.++||||++++.++.+++.|+..|+++..+|++....
T Consensus 418 l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 418 LGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp CEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 0000000 01234556677887777777543 457899999999999999999999999999999998877
Q ss_pred HHHHHHHhhhcCCccEEEEcCccccCCCCCCC------------------------------------------------
Q 014486 326 ERLTRYKGFKEGNKRILVATDLVGRGIDIERV------------------------------------------------ 357 (423)
Q Consensus 326 ~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~------------------------------------------------ 357 (423)
++..+.+.|+.| .|+|||++++||+|++..
T Consensus 498 Ea~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 575 (922)
T 1nkt_A 498 EATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVI 575 (922)
T ss_dssp HHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 777777777776 699999999999999975
Q ss_pred ----CEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 358 ----NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 358 ----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..++
T Consensus 576 ~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 576 EAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999987544
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.4e-41 Score=356.07 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=246.8
Q ss_pred CCHHHHHHHHhCCCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHH
Q 014486 53 LKPELLRAIVDSGFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 131 (423)
Q Consensus 53 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 131 (423)
+.+...+++...+|..++|+|.++++.++. +++++++||||||||+++.++++..+...+++ +++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~-kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTC-CEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCC-EEEEEcChHHHHHHHH
Confidence 445677888888999999999999999976 56799999999999999999999887654433 8999999999999999
Q ss_pred HHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccEEEEcCcchhhccCCcH
Q 014486 132 HEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMR 209 (423)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~vVvDE~h~~~~~~~~~ 209 (423)
+.+.+......++++..++|+...... ...+ ++|+||||+++..++++... .+.++++||+||+|.+.+. ..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~--~~~~--~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~--rg 1063 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK--LLGK--GNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE--NG 1063 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH--HHHH--CSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST--TH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh--hcCC--CCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC--CC
Confidence 998765443337899999987654322 2223 59999999999887765432 3678999999999988752 33
Q ss_pred HH-------HHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeC---hHHHH---
Q 014486 210 RD-------VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS---ELEKN--- 276 (423)
Q Consensus 210 ~~-------~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--- 276 (423)
.. +..+....++..|+|++|||+++. ..+.+.....+..+........+ ..+..+..... ...+.
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RP-vpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRP-VPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCS-SCEEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCC-CCeEEEEEeccCCCchhhhhhh
Confidence 32 333344567789999999999863 44555444333322222211111 11222222221 11111
Q ss_pred -HHHHHHH-HhhcCCcEEEEEcChhhHHHHHHHHHhC----------------------------------CCCeEEEcC
Q 014486 277 -RKLNDLL-DALDFNQVVIFVKSVSRAAELNKLLVEC----------------------------------NFPSICIHS 320 (423)
Q Consensus 277 -~~l~~ll-~~~~~~~~ivf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~~~ 320 (423)
..+...+ ...+.+++||||+++..+..++..|... ...+..+|+
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 1222223 3345689999999999988877665321 235788999
Q ss_pred CCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----c------cCCCCcchhhhcccccCCCCC--ceEE
Q 014486 321 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----Y------DMPDSADTYLHRVGRAGRFGT--KGLA 388 (423)
Q Consensus 321 ~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~------~~~~s~~~~~Q~~GR~~R~g~--~~~~ 388 (423)
++++.+|..+.+.|++|.++|||||+++++|+|+|..++||. | ..|.++.+|.||+|||||.|. .|.+
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999888883 2 235688999999999999986 6889
Q ss_pred EEEecCcccHH
Q 014486 389 ITFVSSASDSD 399 (423)
Q Consensus 389 ~~~~~~~~~~~ 399 (423)
++++.+.....
T Consensus 1302 vll~~~~~~~~ 1312 (1724)
T 4f92_B 1302 VIMCQGSKKDF 1312 (1724)
T ss_dssp EEEEEGGGHHH
T ss_pred EEEecchHHHH
Confidence 98887654443
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.5e-41 Score=324.98 Aligned_cols=296 Identities=20% Similarity=0.258 Sum_probs=221.2
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce-E
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-~ 146 (423)
.|+|+|.++++.++.++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +++ +
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CCcce
Confidence 7999999999999999999999999999999999888765 228999999999999999998884 567 8
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
..++|+... ..+|+|+||+.+....... ..++++||+||+|.+.+ ..+.. +...+ +..+++
T Consensus 162 ~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~-~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA-ESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEBSSSCBC----------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTS-TTTHH----HHHTC-CCSEEE
T ss_pred EEECCCcCC----------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCC-hHHHH----HHHhc-CCCeEE
Confidence 888887642 2599999999998765421 24589999999999987 45543 44444 357899
Q ss_pred EEeccCCcc-------------------HHHHHHHhccCCcee--eeccccc--cc---------------------ccc
Q 014486 227 MFSATLSKE-------------------IRPVCKKFMQDPMEI--YVDDEAK--LT---------------------LHG 262 (423)
Q Consensus 227 ~~SAT~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~--~~---------------------~~~ 262 (423)
++||||.+. ...+...++..+... .+..... .. ...
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 999999732 222211111111110 0000000 00 000
Q ss_pred ceEE---------------------EEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCC
Q 014486 263 LVQH---------------------YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (423)
Q Consensus 263 ~~~~---------------------~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 321 (423)
+... ........|...+.+++....++++||||++.+.++.+++.|. +..+||+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~ 377 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHR 377 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCC
Confidence 0000 0001223456778888888788999999999999999999884 4568999
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCc-e--EEEEEecCcccH
Q 014486 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-G--LAITFVSSASDS 398 (423)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~-~--~~~~~~~~~~~~ 398 (423)
++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+. + .++.+++....+
T Consensus 378 ~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 378 TSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp SCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999854 3 444456544333
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-40 Score=354.20 Aligned_cols=331 Identities=23% Similarity=0.323 Sum_probs=239.3
Q ss_pred CCCCCChhhhhccccccc-CCceEEEccCCCcchhHHHHHHhhccCC--------CCCCeEEEEEecChHHHHHHHHHHH
Q 014486 65 GFEHPSEVQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP--------NPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~--------~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
||++++++|.++++.++. ++|++++||||||||+++.++++..+.. ...+.++||++|+++|+.|.++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 789999999999998875 7889999999999999999999976542 1234589999999999999999998
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCC--CCCCccEEEEcCcchhhccCCcHHHHH
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMRRDVQ 213 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~vVvDE~h~~~~~~~~~~~~~ 213 (423)
+..... ++++..++|+....... . . .++|+|+||+++..++++... .+.++++||+||+|.+.+ +....+.
T Consensus 156 ~~~~~~-gi~V~~~tGd~~~~~~~--~-~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d--~RG~~lE 228 (1724)
T 4f92_B 156 KRLATY-GITVAELTGDHQLCKEE--I-S-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD--DRGPVLE 228 (1724)
T ss_dssp HHHTTT-TCCEEECCSSCSSCCTT--G-G-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS--TTHHHHH
T ss_pred HHHhhC-CCEEEEEECCCCCCccc--c-C-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC--ccHHHHH
Confidence 877665 88999999987654321 1 1 269999999998776665432 267899999999998865 2332222
Q ss_pred -------HHHHhCCCCceEEEEeccCCccHHHHHHHhccCCc-e-eeeccccccccccceEEEEEeCh---HHHHHH---
Q 014486 214 -------EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-E-IYVDDEAKLTLHGLVQHYIKLSE---LEKNRK--- 278 (423)
Q Consensus 214 -------~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 278 (423)
+.....++..|+|++|||+|+. ..+.+.....+. . ..+.... . +..+.+.+..... ..+...
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~-R-PvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSF-R-PVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGG-C-SSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCC-c-cCccEEEEeccCCcchhhhhHHHHH
Confidence 2234457788999999999863 344443322221 1 1111111 1 1112222222221 112122
Q ss_pred -HHHHH-HhhcCCcEEEEEcChhhHHHHHHHHHhC-------------------------------------CCCeEEEc
Q 014486 279 -LNDLL-DALDFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIH 319 (423)
Q Consensus 279 -l~~ll-~~~~~~~~ivf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~ 319 (423)
+...+ +...++++||||++++.+..+++.|.+. ...+..+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 22222 2235678999999999888877776531 23477899
Q ss_pred CCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE----ccC------CCCcchhhhcccccCCCCC--ceE
Q 014486 320 SGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDM------PDSADTYLHRVGRAGRFGT--KGL 387 (423)
Q Consensus 320 ~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~g~--~~~ 387 (423)
++|++.+|..+.+.|++|.++|||||+++++|+|+|..++||. |++ |.++.+|.||+|||||.|. .|.
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~ 465 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGE 465 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccE
Confidence 9999999999999999999999999999999999999998885 443 4588999999999999874 689
Q ss_pred EEEEecCcccHHHHHHHH
Q 014486 388 AITFVSSASDSDILNQVS 405 (423)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~ 405 (423)
++++.+..+...+...+.
T Consensus 466 ~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 466 GILITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEEEEESTTCCHHHHHTT
T ss_pred EEEEecchhHHHHHHHHc
Confidence 998888766555554443
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.9e-41 Score=329.67 Aligned_cols=316 Identities=15% Similarity=0.114 Sum_probs=228.1
Q ss_pred CCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHH
Q 014486 51 FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 130 (423)
Q Consensus 51 ~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 130 (423)
+++++.+.++|... ...++|+|+.+++.++.++++++.+|||||||++|++|++..+... ++++||++|+++||.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 44566655555543 4678999998999999999999999999999999999999776543 34899999999999999
Q ss_pred HHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHH
Q 014486 131 CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRR 210 (423)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~ 210 (423)
.+.++ +..+. +.+.. .. ........+.++|.+.+...+... ..+.++++||+||||++ + ..+..
T Consensus 232 ~~~l~-------~~~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~~~~ 295 (618)
T 2whx_A 232 EEALR-------GLPIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PCSVA 295 (618)
T ss_dssp HHHTT-------TSCEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S-HHHHH
T ss_pred HHHhc-------CCcee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C-ccHHH
Confidence 97775 22333 22211 00 011222367788888887655443 45788999999999998 2 46666
Q ss_pred HHHHHHHhCC-CCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCC
Q 014486 211 DVQEIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFN 289 (423)
Q Consensus 211 ~~~~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 289 (423)
.+..+...++ +..|++++|||++.....+.. ..+..+.+.... +. .+...+...+.. ..+
T Consensus 296 ~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~-~~~~~ll~~l~~-~~~ 356 (618)
T 2whx_A 296 ARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PE-RSWNTGFDWITD-YQG 356 (618)
T ss_dssp HHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CS-SCCSSSCHHHHH-CCS
T ss_pred HHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CH-HHHHHHHHHHHh-CCC
Confidence 6666666654 678999999999876442211 122222221110 00 000111222222 357
Q ss_pred cEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEE---------
Q 014486 290 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV--------- 360 (423)
Q Consensus 290 ~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~v--------- 360 (423)
++||||++++.++.+++.|+..++++..+|+. +|.++++.|++|+.+|||||+++++|+|++ +++|
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P 431 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKP 431 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEE
T ss_pred CEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecc
Confidence 99999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred -----------EEccCCCCcchhhhcccccCCCCC-ceEEEEEec--CcccHHHHHHHHHHHh
Q 014486 361 -----------INYDMPDSADTYLHRVGRAGRFGT-KGLAITFVS--SASDSDILNQVSKFMF 409 (423)
Q Consensus 361 -----------i~~~~~~s~~~~~Q~~GR~~R~g~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 409 (423)
|+++.|.+..+|+||+||+||.|. +|.+++|++ ...+...+..+++.+.
T Consensus 432 ~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~ 494 (618)
T 2whx_A 432 VILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKML 494 (618)
T ss_dssp EEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHH
T ss_pred eecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhc
Confidence 677779999999999999999965 899999986 2455566677777654
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.7e-40 Score=315.29 Aligned_cols=287 Identities=15% Similarity=0.118 Sum_probs=209.7
Q ss_pred CCCCCChhhhhcccccccCCce-EEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 65 GFEHPSEVQHECIPQAILGMDV-ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~-ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
|+.+|+|+|+ +++.++.+++. ++++|||||||++|+++++......+ +++||++|+++|+.|+++.+. +
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR--LRTLILAPTRVVAAEMEEALR-------G 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------T
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC--CcEEEECCCHHHHHHHHHHhc-------C
Confidence 6778999986 79999998886 99999999999999999987654332 489999999999999998774 3
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHH-HhCCCC
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-KMTPHD 222 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~-~~~~~~ 222 (423)
..+......... .......|.++|++.+.+.+... ..+.++++||+||||++. ..+......+. ....+.
T Consensus 71 ~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~--~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 71 LPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTD--PCSVAARGYISTRVEMGE 141 (451)
T ss_dssp SCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCS--HHHHHHHHHHHHHHHTTS
T ss_pred ceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCC--cchHHHHHHHHHhhcCCC
Confidence 333322211110 11222479999999988766543 457899999999999772 22222222222 223457
Q ss_pred ceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHH
Q 014486 223 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 302 (423)
Q Consensus 223 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~ 302 (423)
.|++++|||++...... +...+..+....... .... ..+...+.. ..+++||||++++.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p--~~~~-------------~~~~~~l~~-~~~~~lVF~~s~~~a~ 202 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREIP--ERSW-------------NTGFDWITD-YQGKTVWFVPSIKAGN 202 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCCC--SSCC-------------SSSCHHHHH-CCSCEEEECSSHHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccCC--chhh-------------HHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 89999999998754322 122222222111000 0000 001222333 3579999999999999
Q ss_pred HHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEcc------------------
Q 014486 303 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD------------------ 364 (423)
Q Consensus 303 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~------------------ 364 (423)
.+++.|+..++.+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+++
T Consensus 203 ~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 203 DIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 999999999999999999754 56899999999999999999999999999 9999998
Q ss_pred --CCCCcchhhhcccccCCCCC-ceEEEEEecC
Q 014486 365 --MPDSADTYLHRVGRAGRFGT-KGLAITFVSS 394 (423)
Q Consensus 365 --~~~s~~~~~Q~~GR~~R~g~-~~~~~~~~~~ 394 (423)
.|.+..+|+||+||+||.|. +|.+++++..
T Consensus 278 ~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 278 GPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 7888877643
No 45
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.4e-39 Score=314.57 Aligned_cols=277 Identities=19% Similarity=0.200 Sum_probs=211.1
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.++++|+.+++.+..++++++.+|||||||+++++++++. +.++||++|+++||.|+++.+.+.. +..+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg 286 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPN 286 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCee
Confidence 5667777777777788899999999999999999988873 2289999999999999999887665 34555
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCce--E
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ--V 225 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (423)
...|+.. .....+|+|+||++|+ ....+.+.++++||+||||.+. .++...+..+.+.++...+ +
T Consensus 287 ~~vG~~~--------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~--~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 287 IRTGVRT--------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTD--STTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EECSSCE--------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCS--HHHHHHHHHHHHHTTTTTCSEE
T ss_pred EEECcEe--------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcC--ccHHHHHHHHHHhhhhcCCceE
Confidence 6666643 2334699999999973 5666778899999999998764 4777778888888887666 7
Q ss_pred EEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHH
Q 014486 226 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 305 (423)
Q Consensus 226 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~ 305 (423)
+++|||++..+. ...+....+.... ............ +.....+++||||++++.++.++
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~----~~~i~~~~~~~~----------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSN----TGEIPFYGKAIP----------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBS----CSSEEETTEEEC----------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecc----cchhHHHHhhhh----------hhhccCCcEEEEeCCHHHHHHHH
Confidence 888999997421 1111111110000 000110000000 22336789999999999999999
Q ss_pred HHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEE----------Ecc-----------
Q 014486 306 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI----------NYD----------- 364 (423)
Q Consensus 306 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi----------~~~----------- 364 (423)
+.|++.++++..+||++++.+ |.++..+|||||+++++|||++ +++|| +||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999764 5556679999999999999997 99998 566
Q ss_pred CCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 365 ~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
.|.+..+|+||+||+|| |++|. +.|+++.+.
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 89999999999999999 99999 888886544
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-39 Score=326.07 Aligned_cols=333 Identities=15% Similarity=0.178 Sum_probs=238.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC-CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
..+|.++++++.+.+.+...+ ..|++.|+++++.++.+ +++++.||||||||++..+.++......+.+.++++++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~ 149 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCch
Confidence 346999999999999999887 68999999999888874 5799999999999994333333322222223479999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcch-h
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-M 202 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~-~ 202 (423)
++|+.|+++.+........+..+..-..... ......+|+++||+.+.+.+... ..+.++++||+||+|. .
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~-------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ 221 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN-------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERT 221 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEETTEE-------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCC
T ss_pred HHHHHHHHHHHHHHhCCchhheecceecccc-------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccc
Confidence 9999999987766542211222221111111 01123699999999999866553 4578999999999995 3
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHH----HHH
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK----NRK 278 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 278 (423)
++.......+..+... .+..+++++|||++.. .+ ..++.....+.+.... ..+...+......+. ...
T Consensus 222 ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 222 LATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHH
Confidence 3311223334444443 3578999999999643 23 3344433333332221 112222222222222 233
Q ss_pred HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHh-----------CCCCeEEEcCCCCHHHHHHHHHhhh-----cCCccEE
Q 014486 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-----------CNFPSICIHSGMSQEERLTRYKGFK-----EGNKRIL 342 (423)
Q Consensus 279 l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~il 342 (423)
+..++.....+++||||++++.++.+++.|.+ .++.+..+||++++.+|..+++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 34444444678999999999999999999975 5778999999999999999999999 9999999
Q ss_pred EEcCccccCCCCCCCCEEEEccC------------------CCCcchhhhcccccCCCCCceEEEEEecCc
Q 014486 343 VATDLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 343 i~T~~~~~Gld~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
|||+++++|+|+|++++||+++. |.|...|.||+||+||. .+|.|+.|+++.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 99999999999999999999887 88999999999999999 789999999753
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.2e-41 Score=319.84 Aligned_cols=289 Identities=17% Similarity=0.155 Sum_probs=190.9
Q ss_pred ccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 158 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (423)
.++.++++++++|||||||++|+++++..+...+ ++++|++||++||.|+++.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~--~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~---- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR--LRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFS---- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC--CeEEEEcchHHHHHHHHHHHhcC-------CeEEecccce----
Confidence 4677999999999999999999999988655432 48999999999999999877633 3322111100
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhC-CCCceEEEEeccCCccHH
Q 014486 159 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 237 (423)
Q Consensus 159 ~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~ 237 (423)
.......-+-..+.+.+...+. ....+.++++||+||+|++. ..+...+..+.... +...|++++|||+++...
T Consensus 71 --~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~~--~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 71 --AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFLD--PASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp --CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCCS--HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred --eccCCccceeeecccchhHhhh-CcccccCccEEEEECccccC--cchHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 0001100112222233332222 23457899999999999982 23333332232222 357899999999987643
Q ss_pred HHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEE
Q 014486 238 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (423)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (423)
.+.. ....+... ....+.......+ ..+.. .++++||||++++.++.+++.|+..++++..
T Consensus 146 ~~~~----~~~~~~~~-------------~~~~~~~~~~~~~-~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 146 EFPH----SNGEIEDV-------------QTDIPSEPWNTGH-DWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SSCC----CSSCEEEE-------------ECCCCSSCCSSSC-HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhh----cCCCeeEe-------------eeccChHHHHHHH-HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 2211 11111000 0000111111111 22222 2579999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE-------------------ccCCCCcchhhhcccc
Q 014486 318 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------------------YDMPDSADTYLHRVGR 378 (423)
Q Consensus 318 ~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR 378 (423)
+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|.++.+|.||+||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 999 3688889999999999999999999999999 999986 8889999999999999
Q ss_pred cCCC-CCceEEEEEec--CcccHHHHHHHHHHHh
Q 014486 379 AGRF-GTKGLAITFVS--SASDSDILNQVSKFMF 409 (423)
Q Consensus 379 ~~R~-g~~~~~~~~~~--~~~~~~~~~~~~~~~~ 409 (423)
+||. |++|.+++|+. ...+...+..+++.+.
T Consensus 282 ~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~ 315 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEASML 315 (440)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHH
T ss_pred cCCCCCCCceEEEEeccCChhhhhhhhhhhHHhc
Confidence 9997 68999999973 3455566777777653
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.9e-40 Score=322.21 Aligned_cols=307 Identities=17% Similarity=0.195 Sum_probs=214.3
Q ss_pred HHHhCCCC-----CCChhhh-----hcccccc------cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 60 AIVDSGFE-----HPSEVQH-----ECIPQAI------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 60 ~l~~~~~~-----~~~~~Q~-----~~i~~~~------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
+|...||. .|+++|+ ++|+.++ .++++++++|||||||++|+++++..+...+ ++++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~--~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR--LRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT--CCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEccH
Confidence 45556766 8999999 9999988 8999999999999999999999997754332 489999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++||.|+++.++.+ ++. ...+. . ........-+-+.+.+.+...+... ..+.++++||+||+|++.
T Consensus 280 r~La~Q~~~~l~~~-----~i~--~~~~~--l----~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~ 345 (673)
T 2wv9_A 280 RVVAAEMAEALRGL-----PVR--YLTPA--V----QREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTD 345 (673)
T ss_dssp HHHHHHHHHHTTTS-----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCC
T ss_pred HHHHHHHHHHHhcC-----Cee--eeccc--c----cccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccC
Confidence 99999999877643 121 11110 0 0011111234455556665544432 567899999999999882
Q ss_pred ccCCcHHHHHHHHHhC-CCCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHH
Q 014486 204 ESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 282 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 282 (423)
..+...+..+...+ +...|+++||||+++.+..+... ..+. ..+.. ..+.......+ ..
T Consensus 346 --~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v~~--------------~~~~~~~~~~l-~~ 405 (673)
T 2wv9_A 346 --PASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV-HDVSS--------------EIPDRAWSSGF-EW 405 (673)
T ss_dssp --HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE-EEEEC--------------CCCSSCCSSCC-HH
T ss_pred --ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce-EEEee--------------ecCHHHHHHHH-HH
Confidence 22222333333333 25789999999998764322110 0111 00000 00000001111 22
Q ss_pred HHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE
Q 014486 283 LDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 362 (423)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~ 362 (423)
+.. ..+++||||++++.++.+++.|+..++++..+||. +|..+++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 406 l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 406 ITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp HHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred HHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEE
Confidence 222 46899999999999999999999999999999994 788999999999999999999999999999 999998
Q ss_pred --------------------ccCCCCcchhhhcccccCCC-CCceEEEEEec--CcccHHHHHHHHHHH
Q 014486 363 --------------------YDMPDSADTYLHRVGRAGRF-GTKGLAITFVS--SASDSDILNQVSKFM 408 (423)
Q Consensus 363 --------------------~~~~~s~~~~~Q~~GR~~R~-g~~~~~~~~~~--~~~~~~~~~~~~~~~ 408 (423)
++.|.++.+|.||+||+||. |+.|.+++|+. ...+...+..++..+
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 56889999999999999998 78999999973 345555566666655
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-38 Score=310.79 Aligned_cols=309 Identities=18% Similarity=0.212 Sum_probs=189.7
Q ss_pred CCChhhhhccccccc----C-CceEEEccCCCcchhHHHHHHhhccCCC------CCCeEEEEEecChHHHHHHH-HHHH
Q 014486 68 HPSEVQHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQIC-HEFE 135 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~----~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~-~~~~ 135 (423)
.|+++|.++++.++. + +++++++|||+|||++++..+...+... ...+++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999998876 4 5689999999999999765544433322 13458999999999999998 6666
Q ss_pred HHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc----CCCCCCCccEEEEcCcchhhccCCcHHH
Q 014486 136 RFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMRRD 211 (423)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~----~~~~~~~~~~vVvDE~h~~~~~~~~~~~ 211 (423)
.+. ..+..+.++. .....+|+|+||++|...... ..+....+++||+||||++... ....
T Consensus 258 ~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~~ 321 (590)
T 3h1t_A 258 PFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNSN 321 (590)
T ss_dssp TTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chHH
Confidence 542 2333333221 122369999999999876542 2344567899999999998652 2244
Q ss_pred HHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeeccc-----cccccc-------------------------
Q 014486 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE-----AKLTLH------------------------- 261 (423)
Q Consensus 212 ~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------------------- 261 (423)
+..++..++ ..+++++||||..........++..+...+.... ......
T Consensus 322 ~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 556666665 4679999999886543333333333221110000 000000
Q ss_pred cceEEEEEeChH-------HHHH----HHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCC--------CeEEEcCC
Q 014486 262 GLVQHYIKLSEL-------EKNR----KLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNF--------PSICIHSG 321 (423)
Q Consensus 262 ~~~~~~~~~~~~-------~~~~----~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~--------~~~~~~~~ 321 (423)
.+.......... .+.. .+..++... +.+++||||+++++++.+++.|...+. .+..+||.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 000000000010 1111 233333333 447999999999999999999987543 26778888
Q ss_pred CCHHHHHHHHHhhhcCCcc---EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCC--ceEEEEEecC
Q 014486 322 MSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT--KGLAITFVSS 394 (423)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~---ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~--~~~~~~~~~~ 394 (423)
++. +|.++++.|++++.+ |||+|+++++|+|+|++++||++++|+|+..|.||+||++|.+. .+..+++++.
T Consensus 481 ~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 481 EGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp THH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred ChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 764 799999999998766 88899999999999999999999999999999999999999875 3444444443
No 50
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-37 Score=265.93 Aligned_cols=215 Identities=80% Similarity=1.311 Sum_probs=187.7
Q ss_pred ccCCcccccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCe
Q 014486 36 AKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQV 115 (423)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~ 115 (423)
.+.++.+.+..+|+++++++.+.++|.+.|+..|+++|.++++.++.++++++.+|||+|||++++++++..+.....++
T Consensus 4 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~ 83 (220)
T 1t6n_A 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 83 (220)
T ss_dssp ----------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC
T ss_pred CCCCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE
Confidence 34566777788899999999999999999999999999999999999999999999999999999999999887666666
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
++||++|+++|+.|+++.++++....+++++..++|+.....+...+.++.++|+|+||+++..++......+.+++++|
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998777788999999999888877777776679999999999999888888889999999
Q ss_pred EcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCcee
Q 014486 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250 (423)
Q Consensus 196 vDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 250 (423)
+||||++.++.++...+..+...+++..|++++|||+++.+..+++.++.+|..+
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 9999999875578888999999998899999999999999999999998888655
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-37 Score=320.17 Aligned_cols=318 Identities=18% Similarity=0.180 Sum_probs=222.7
Q ss_pred CCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
.|+|||.+++..++.. .+++++++||+|||++++..+......+..+ ++|||||+ .|+.||..++.+.. +++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f----~l~ 226 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF----NLR 226 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS----CCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh----CCC
Confidence 7999999999988874 4799999999999999887776655444333 79999999 99999999997765 456
Q ss_pred EEEEEcCcchHHHHHH-HhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcchhhccCCcH-HHHHHHHHhCCCC
Q 014486 146 VAVFYGGVNIKIHKDL-LKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHD 222 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~-~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~~~~~~~~~-~~~~~~~~~~~~~ 222 (423)
+..++++......... ......+|+|+|++.+...... ..+...++++||+||||++.+..... .....+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 6666554322211110 0012358999999988642111 11234578999999999997643221 2222333333345
Q ss_pred ceEEEEeccCCc----cHHHHHHHhccCCc---------------------------e----------------------
Q 014486 223 KQVMMFSATLSK----EIRPVCKKFMQDPM---------------------------E---------------------- 249 (423)
Q Consensus 223 ~~~v~~SAT~~~----~~~~~~~~~~~~~~---------------------------~---------------------- 249 (423)
.+++++||||.. ++...+........ .
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 679999999843 11111110000000 0
Q ss_pred -----------------------------eeec----cccccccccceEEEE----------------------------
Q 014486 250 -----------------------------IYVD----DEAKLTLHGLVQHYI---------------------------- 268 (423)
Q Consensus 250 -----------------------------~~~~----~~~~~~~~~~~~~~~---------------------------- 268 (423)
+... ...............
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 0000 000000000000000
Q ss_pred -----------------EeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHh-CCCCeEEEcCCCCHHHHHHH
Q 014486 269 -----------------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTR 330 (423)
Q Consensus 269 -----------------~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r~~~ 330 (423)
......|...+.+++...+++++||||++...++.+.+.|.. .|+++..+||++++.+|..+
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 112334677788888887889999999999999999999995 59999999999999999999
Q ss_pred HHhhhcCC--ccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEE
Q 014486 331 YKGFKEGN--KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 391 (423)
Q Consensus 331 ~~~f~~~~--~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 391 (423)
++.|++|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.+.++++
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 99999998 99999999999999999999999999999999999999999999998865554
No 52
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.6e-37 Score=299.18 Aligned_cols=309 Identities=17% Similarity=0.211 Sum_probs=211.5
Q ss_pred CCChhhhhcccccc----cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|+|||.++++.+. .+++++++++||+|||++++..+........ ..++|||||+ .|+.||.++++++. ++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~-~l~~qw~~e~~~~~---~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPL-SVLKNWEEELSKFA---PH 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECS-TTHHHHHHHHHHHC---TT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccH-HHHHHHHHHHHHHC---CC
Confidence 79999999998774 4678999999999999997665544433222 2379999995 68999999999886 46
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCc
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 223 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~ 223 (423)
+++..++|+... .....++|+|+||+.+..... +....+++||+||||++.+. . ....+....++ ..
T Consensus 112 ~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~-~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 112 LRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP-Q--TKIFKAVKELK-SK 178 (500)
T ss_dssp SCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT-T--SHHHHHHHTSC-EE
T ss_pred ceEEEEecCchh------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH-h--HHHHHHHHhhc-cC
Confidence 677777776532 111236999999999875432 23356889999999999762 2 12233334443 46
Q ss_pred eEEEEeccCCcc-HHH---HHHHhc--------------------------------cCCceeeecccc---ccccccce
Q 014486 224 QVMMFSATLSKE-IRP---VCKKFM--------------------------------QDPMEIYVDDEA---KLTLHGLV 264 (423)
Q Consensus 224 ~~v~~SAT~~~~-~~~---~~~~~~--------------------------------~~~~~~~~~~~~---~~~~~~~~ 264 (423)
+++++||||... ..+ .+.... ..+..+...... ....+...
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~ 258 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKI 258 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCe
Confidence 789999998542 111 111000 011111000000 00011111
Q ss_pred EEEEEeC--h-------------------------------------------------------HHHHHHHHHHHHhh-
Q 014486 265 QHYIKLS--E-------------------------------------------------------LEKNRKLNDLLDAL- 286 (423)
Q Consensus 265 ~~~~~~~--~-------------------------------------------------------~~~~~~l~~ll~~~- 286 (423)
...+.+. . ..|...+.+++...
T Consensus 259 ~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~ 338 (500)
T 1z63_A 259 ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEAL 338 (500)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHH
Confidence 1111111 1 12333444555443
Q ss_pred -cCCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhhcC-Ccc-EEEEcCccccCCCCCCCCEEEE
Q 014486 287 -DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVATDLVGRGIDIERVNIVIN 362 (423)
Q Consensus 287 -~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-ili~T~~~~~Gld~~~~~~vi~ 362 (423)
.+.++||||++...++.+.+.|... |+.+..+||+++..+|.++++.|+++ ..+ +|++|+++++|+|++.+++||+
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 5679999999999999999999885 99999999999999999999999998 455 7889999999999999999999
Q ss_pred ccCCCCcchhhhcccccCCCCCceEE--EEEecC
Q 014486 363 YDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSS 394 (423)
Q Consensus 363 ~~~~~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~ 394 (423)
+++||++..+.|++||++|.|+.+.+ +.++..
T Consensus 419 ~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 419 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp SSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred eCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 99999999999999999999987655 444544
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.7e-38 Score=298.34 Aligned_cols=278 Identities=17% Similarity=0.168 Sum_probs=192.1
Q ss_pred ccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchH
Q 014486 77 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 156 (423)
Q Consensus 77 i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (423)
...+..++++++++|||||||++|++|++..+...+ +++||++|+++|+.|+++.++ +..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~--~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR--LRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQR- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT--CCEEEEECSHHHHHHHHHHTT-------TSCEEECC------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEECchHHHHHHHHHHhc-------CceEeEEeccccc-
Confidence 344566888999999999999999999998765322 389999999999999998775 2233222111110
Q ss_pred HHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccH
Q 014486 157 IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236 (423)
Q Consensus 157 ~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~ 236 (423)
. ..+...+.++|.+.+...+... ..+.++++||+||||.+.........+.... ...+..|++++|||++..+
T Consensus 85 ----~-~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~-~~~~~~~~il~SAT~~~~~ 157 (459)
T 2z83_A 85 ----E-HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK-VELGEAAAIFMTATPPGTT 157 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCC
T ss_pred ----C-CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH-hccCCccEEEEEcCCCcch
Confidence 0 1222367788888887655443 4578999999999997421001111111111 1235789999999999764
Q ss_pred HHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeE
Q 014486 237 RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI 316 (423)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~ 316 (423)
..+... ..+....... .+. .....+..++... .+++||||++++.++.+++.|+..++.+.
T Consensus 158 ~~~~~~--~~pi~~~~~~---------------~~~-~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~ 218 (459)
T 2z83_A 158 DPFPDS--NAPIHDLQDE---------------IPD-RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVI 218 (459)
T ss_dssp CSSCCC--SSCEEEEECC---------------CCS-SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred hhhccC--CCCeEEeccc---------------CCc-chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEE
Confidence 322111 1111111000 000 0000111223333 57999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEE--------------------ccCCCCcchhhhcc
Q 014486 317 CIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN--------------------YDMPDSADTYLHRV 376 (423)
Q Consensus 317 ~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~--------------------~~~~~s~~~~~Q~~ 376 (423)
.+|+. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|+.+|+||+
T Consensus 219 ~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~ 293 (459)
T 2z83_A 219 QLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRR 293 (459)
T ss_dssp EESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHH
T ss_pred ecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhc
Confidence 99995 6778899999999999999999999999999 99998 67999999999999
Q ss_pred cccCCCCC-ceEEEEEecCc
Q 014486 377 GRAGRFGT-KGLAITFVSSA 395 (423)
Q Consensus 377 GR~~R~g~-~~~~~~~~~~~ 395 (423)
||+||.|. +|.+++|+.+.
T Consensus 294 GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 294 GRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp TTSSCCTTCCCEEEEECSCC
T ss_pred cccCCCCCCCCeEEEEEccc
Confidence 99999997 89999999864
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.9e-37 Score=291.13 Aligned_cols=268 Identities=14% Similarity=0.149 Sum_probs=188.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
++++++++|||||||++|++++++.+...+ .+++|++||++|+.|+++.+. ++.+....++.. ..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g--~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~------~~ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR--LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQ------SE 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcc------cc
Confidence 678999999999999999998885544332 389999999999999887664 445555444321 12
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHh-CCCCceEEEEeccCCccHHHHHH
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEIRPVCK 241 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~-~~~~~~~v~~SAT~~~~~~~~~~ 241 (423)
.....-+.+.|.+.+.+.+.. ...+.++++||+||+|++. ..+......+... .+...+++++|||+++.+..+..
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~--~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~ 143 (431)
T 2v6i_A 67 RTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD--PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP 143 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC
T ss_pred CCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC--ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC
Confidence 222236777888888765554 4568899999999999873 2222333333322 24678999999999975322111
Q ss_pred HhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCC
Q 014486 242 KFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 321 (423)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~ 321 (423)
. .+........ .+. .+...+..++... .+++||||++++.++.+++.|+..++++..+||+
T Consensus 144 ~---~~~i~~~~~~--------------~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~ 204 (431)
T 2v6i_A 144 S---NSPIIDEETR--------------IPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK 204 (431)
T ss_dssp C---SSCCEEEECC--------------CCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred C---CCceeecccc--------------CCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 0 0100110000 000 0011122333333 5789999999999999999999999999999997
Q ss_pred CCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCE-----------------EEEccCCCCcchhhhcccccCCCCC
Q 014486 322 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI-----------------VINYDMPDSADTYLHRVGRAGRFGT 384 (423)
Q Consensus 322 ~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~ 384 (423)
+|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|.
T Consensus 205 ----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 ----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp ----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 577889999999999999999999999999 555 5778899999999999999999985
Q ss_pred c-eEEEEEe
Q 014486 385 K-GLAITFV 392 (423)
Q Consensus 385 ~-~~~~~~~ 392 (423)
. +.++++.
T Consensus 280 ~~~~~~~~~ 288 (431)
T 2v6i_A 280 KLGDIYAYS 288 (431)
T ss_dssp CCCCEEEEC
T ss_pred CCCeEEEEc
Confidence 4 4555554
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.9e-36 Score=254.73 Aligned_cols=203 Identities=32% Similarity=0.565 Sum_probs=184.8
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.+|+++++++.++++|.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....++++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876666668999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhcc
Q 014486 126 LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 205 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~ 205 (423)
|+.|+.+.++++....+++++..++|+.........+..+ ++|+|+||+++...+......+.+++++|+||||++.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~- 160 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS- 160 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSC-CSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS-
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCC-CCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh-
Confidence 9999999999998777688999999998887776666555 69999999999999988888889999999999999987
Q ss_pred CCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCcee
Q 014486 206 LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250 (423)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 250 (423)
.++...+..+...+++..|++++|||+++.+..+++.++.+|..+
T Consensus 161 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 161 QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 689999999999999899999999999999999999998887654
No 56
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=269.86 Aligned_cols=205 Identities=33% Similarity=0.546 Sum_probs=183.3
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccC--CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..+|+++++++.++++|.++||..|+++|.++++.++.+ +++++++|||||||++|++|++..+.....++++||++|
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 357999999999999999999999999999999999997 899999999999999999999999887777779999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcch
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDK 201 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~ 201 (423)
+++||.|+++.++.+....+++.+....|+....... ...++|+|+||++|..++.+ ..+.+.++++||+||||+
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 9999999999999998877788999888887653322 23369999999999998865 556789999999999999
Q ss_pred hhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeec
Q 014486 202 MLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (423)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
+.+..++...+..+...+++..|++++|||++..+..++..++.+|..+.+.
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9875689999999999999999999999999999999999999998877653
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-36 Score=302.47 Aligned_cols=334 Identities=18% Similarity=0.219 Sum_probs=232.9
Q ss_pred CCChhhhhcccccc----cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|+|||.+++..++ .++++|++.+||+|||++++..+............+||||| ..|+.||.+++.++. |+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 78999999998776 67889999999999999877665544322222226899999 678999999998886 57
Q ss_pred ceEEEEEcCcchHHHHHHH-----------hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHH
Q 014486 144 IKVAVFYGGVNIKIHKDLL-----------KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 212 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~ 212 (423)
+++..++|+.......... ....++|+|+|++.+...... +....+++||+||||++.+. . ...
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~-~--s~~ 386 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA-E--SSL 386 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS-S--SHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc-h--hHH
Confidence 7888888876655443322 223468999999999763321 22246789999999999752 2 223
Q ss_pred HHHHHhCCCCceEEEEeccCCc----cHHHHHHHhccC-----------------------------Cceeeeccc-ccc
Q 014486 213 QEIFKMTPHDKQVMMFSATLSK----EIRPVCKKFMQD-----------------------------PMEIYVDDE-AKL 258 (423)
Q Consensus 213 ~~~~~~~~~~~~~v~~SAT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~-~~~ 258 (423)
...+..+ +....+++||||-. ++..++...... +..+..... ...
T Consensus 387 ~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~ 465 (800)
T 3mwy_W 387 YESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEK 465 (800)
T ss_dssp HHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTT
T ss_pred HHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhh
Confidence 3334444 34557999999832 122222111110 000000000 000
Q ss_pred ccccceEEEEEeC-------------------------------------------------------------------
Q 014486 259 TLHGLVQHYIKLS------------------------------------------------------------------- 271 (423)
Q Consensus 259 ~~~~~~~~~~~~~------------------------------------------------------------------- 271 (423)
..+......+.+.
T Consensus 466 ~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 466 SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSH
T ss_pred ccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHH
Confidence 0000001111110
Q ss_pred --------hHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc-
Q 014486 272 --------ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR- 340 (423)
Q Consensus 272 --------~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~- 340 (423)
...|...+..++..+ .+.++||||+....++.+.+.|...|+++..+||+++..+|..+++.|+++...
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~ 625 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSC
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCc
Confidence 122444556666554 457999999999999999999999999999999999999999999999986654
Q ss_pred --EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEE--EEecC-cccHHHHHHHHHHHhcc
Q 014486 341 --ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSS-ASDSDILNQVSKFMFLL 411 (423)
Q Consensus 341 --ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 411 (423)
+|++|.++++|+|++.+++||++++|||+..+.||+||++|.||+..|. .|++. ..+..+++...+++.+.
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~ 701 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILE 701 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSC
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999876544 34543 45667777777777543
No 58
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=5.4e-36 Score=261.51 Aligned_cols=210 Identities=26% Similarity=0.446 Sum_probs=189.3
Q ss_pred cccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC-----CCCeE
Q 014486 42 GIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVT 116 (423)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~ 116 (423)
+....+|.++++++.+.+++.+.||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 3445679999999999999999999999999999999999999999999999999999999999875432 34558
Q ss_pred EEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEE
Q 014486 117 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 196 (423)
Q Consensus 117 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVv 196 (423)
+||++|+++|+.|+.+.++++.... ++++..++|+.........+.++ ++|+|+||+++..++......+.+++++|+
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 9999999999999999999988776 78999999999888887777776 699999999999999888888999999999
Q ss_pred cCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecc
Q 014486 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 197 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
||||++.+ .+|...+..+...+++..|++++|||+++.+..+++.++.++..+.+..
T Consensus 183 DEah~l~~-~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 183 DEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp TTHHHHHH-TTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred eCHHHHhh-hCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999988 7899999999999999999999999999999999999999888776654
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=9.9e-36 Score=257.78 Aligned_cols=207 Identities=35% Similarity=0.509 Sum_probs=183.1
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
....+|+++++++.+.++|.+.||..|+++|.++++.++.++++++.+|||+|||++|+++++..+.....++++||++|
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34567999999999999999999999999999999999999999999999999999999999988776555669999999
Q ss_pred ChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 123 TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 123 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
+++|+.|+++.++++....+++++..+.|+.....+...+.. ++|+|+||+++..++......+.+++++|+||||++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK--CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTS--CSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccC--CCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 999999999999999876668899999999887776665543 599999999999998887788889999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceee
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (423)
.++..+...+..+...++...|++++|||+++.+...+..++.+|..+.
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 8833499999999999998999999999999999888888888876654
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=8.6e-36 Score=259.27 Aligned_cols=206 Identities=42% Similarity=0.628 Sum_probs=175.4
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|+++++++.+.++|.+.||..|+++|.++++.++.++++++.+|||+|||++|+++++..+.....++++||++|++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 45699999999999999999999999999999999999999999999999999999999999887655566999999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 204 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~ 204 (423)
+|+.|+.+.++++.... ++.+..+.|+.....+...+..+.++|+|+||+++...+......+.++++||+||||++.+
T Consensus 109 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 109 ELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp HHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc
Confidence 99999999999987654 67888888888777666666666579999999999999988778889999999999999987
Q ss_pred cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeee
Q 014486 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (423)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (423)
.++...+..+...++...|++++|||+++.+..+++.++.+|..+.+
T Consensus 188 -~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 188 -RGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp -TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred -cCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 68899999999999999999999999999999999999988876654
No 61
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=259.24 Aligned_cols=205 Identities=32% Similarity=0.613 Sum_probs=183.6
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+|+++++++.+.++|.++|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+...+.++++||++|++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999998776655556899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhc-CCCCCCCccEEEEcCcchhh
Q 014486 125 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 125 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~vVvDE~h~~~ 203 (423)
+|+.|+++.++++.... ++++..+.|+.....+...+..+ ++|+|+||+++...+.. ....+.++++||+||||++.
T Consensus 122 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 122 ELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTC-CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999987765 78899999998877666666655 69999999999998775 45678899999999999998
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeee
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (423)
+ .++...+..+...+++..|++++|||+++.+..+++.++.+|..+.+
T Consensus 200 ~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 200 N-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp H-TTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred c-cChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 8 68999999999999999999999999999999999999998876644
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.9e-34 Score=280.57 Aligned_cols=333 Identities=15% Similarity=0.122 Sum_probs=223.6
Q ss_pred CCChhhhhcccccc---------cCCceEEEccCCCcchhHHHHHHhhccCCCC----CCeEEEEEecChHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAI---------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~---------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~ 134 (423)
.|+|||.+++..+. .+.++|++.+||+|||++++..+...+...+ ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998874 3456999999999999988776655433221 22368999996 8999999999
Q ss_pred HHHhccCCCceEEEEEcCcchHHHH--HHHhc-----CCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCC
Q 014486 135 ERFSTYLPDIKVAVFYGGVNIKIHK--DLLKN-----ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD 207 (423)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~ 207 (423)
.++... .+.+..++++....... ..+.. ...+|+|+|++.+..... .+....+++||+||||++.+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~-- 207 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNS-- 207 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTT--
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCCh--
Confidence 998754 35666666665432211 12211 136899999999876432 334467889999999999762
Q ss_pred cHHHHHHHHHhCCCCceEEEEeccCCccH----HHHH---------------HHhcc-----------------------
Q 014486 208 MRRDVQEIFKMTPHDKQVMMFSATLSKEI----RPVC---------------KKFMQ----------------------- 245 (423)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~v~~SAT~~~~~----~~~~---------------~~~~~----------------------- 245 (423)
.......+. .+. ....+++||||-..- ..++ +.+..
T Consensus 208 ~~~~~~al~-~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 208 DNQTYLALN-SMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp CHHHHHHHH-HHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred hhHHHHHHH-hcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 222233332 232 456899999984321 1100 00000
Q ss_pred ------CCceeeec-cccccccccceEEEEEe------------------------------------------------
Q 014486 246 ------DPMEIYVD-DEAKLTLHGLVQHYIKL------------------------------------------------ 270 (423)
Q Consensus 246 ------~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------------------------ 270 (423)
.+..+... .......+......+.+
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00000000 00000000000011100
Q ss_pred ------------------------------ChHHHHHHHHHHHHh---hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEE
Q 014486 271 ------------------------------SELEKNRKLNDLLDA---LDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 317 (423)
Q Consensus 271 ------------------------------~~~~~~~~l~~ll~~---~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~ 317 (423)
....|...+..++.. ..+.++||||+....++.+.+.|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 012233334444433 24689999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhhhcCCcc---EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEE--EEe
Q 014486 318 IHSGMSQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFV 392 (423)
Q Consensus 318 ~~~~~~~~~r~~~~~~f~~~~~~---ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~--~~~ 392 (423)
+||+++..+|.++++.|+++... +|++|.++++|+|++++++||++++||++..+.|++||++|.||++.|. .++
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998764 8889999999999999999999999999999999999999999876544 345
Q ss_pred cCc-ccHHHHHHHHHHHh
Q 014486 393 SSA-SDSDILNQVSKFMF 409 (423)
Q Consensus 393 ~~~-~~~~~~~~~~~~~~ 409 (423)
... .+..++....++..
T Consensus 526 ~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKA 543 (644)
T ss_dssp ETTSHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 443 34555666555554
No 63
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-35 Score=254.83 Aligned_cols=207 Identities=33% Similarity=0.596 Sum_probs=182.9
Q ss_pred CCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
.+|+++++++.+.++|.+.|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+.....++++||++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998877666669999999999
Q ss_pred HHHHHHHHHHHHhccCC---CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh
Q 014486 126 LAYQICHEFERFSTYLP---DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM 202 (423)
Q Consensus 126 L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~ 202 (423)
|+.|+.+.++++....+ ++.+..+.|+.........+..+ ++|+|+||+++...+......+.+++++|+||||++
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQ-PHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSC-CSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCC-CCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999876543 57888888887665544444333 699999999999999888788899999999999999
Q ss_pred hccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecc
Q 014486 203 LESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
.+ .++...+..+...+++..|++++|||+++++..+++.++.+|..+....
T Consensus 163 ~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LD-MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HH-TTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hh-hChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 87 6889999999999998999999999999999999999999987765543
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=255.93 Aligned_cols=207 Identities=29% Similarity=0.540 Sum_probs=177.9
Q ss_pred ccccCCCCcC-CCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC------CC
Q 014486 41 VGIHSSGFRD-FLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PG 113 (423)
Q Consensus 41 ~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~------~~ 113 (423)
.+....+|++ +++++.+.++|.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3444567888 8999999999999999999999999999999999999999999999999999998866532 24
Q ss_pred CeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccE
Q 014486 114 QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRH 193 (423)
Q Consensus 114 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~ 193 (423)
++++||++|+++|+.|+.+.++++.. .++++..++|+.....+...+.++ ++|+|+||+++..++......+.++++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceE
Confidence 45899999999999999999999863 378899999998877777777666 699999999999998888888999999
Q ss_pred EEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceee
Q 014486 194 FILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIY 251 (423)
Q Consensus 194 vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 251 (423)
||+||||++.+ .++...+..+...+++..|++++|||+++.+..++..++.+|..+.
T Consensus 171 lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLD-MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHH-TTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhc-cchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999988 6899999999999999999999999999999999999998887654
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.8e-35 Score=253.51 Aligned_cols=207 Identities=37% Similarity=0.590 Sum_probs=177.1
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
...+|+++++++.+.+.|.+.|+..|+++|.++++.++.++++++.+|||+|||++|+++++..+.....++++||++|+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34569999999999999999999999999999999999999999999999999999999999988776666799999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|+++.++++.... ++++..+.|+.........+.+ ++|+|+||+++...+......+.++++||+||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 999999999999987665 7888899998876666555544 6999999999999988888888999999999999998
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeecc
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
+ .++...+..+...+++..|++++|||+++.+..+++.++.+|..+.+..
T Consensus 169 ~-~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 169 S-SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp H-TTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred h-hhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 7 6899999999999999999999999999999999999999887765543
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.1e-34 Score=284.07 Aligned_cols=294 Identities=17% Similarity=0.163 Sum_probs=212.0
Q ss_pred CHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHH
Q 014486 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (423)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (423)
+...++++.+... |.|.......+.+++++++||||||||+.++..+... + .++|++|+++||.|+++.
T Consensus 130 ~~d~l~~i~dl~~----p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~----~---~gl~l~PtR~LA~Qi~~~ 198 (677)
T 3rc3_A 130 CKDDLRKISDLRI----PPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSA----K---SGVYCGPLKLLAHEIFEK 198 (677)
T ss_dssp CHHHHHHHTBCCC----GGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHS----S---SEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhhccC----hhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc----C---CeEEEeCHHHHHHHHHHH
Confidence 3444555544322 5566566667889999999999999998544444332 2 459999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHH
Q 014486 134 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQ 213 (423)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~ 213 (423)
+++. ++++..++|+...... -.....+++++|++.+. ....+++||+||+|++.+ .++...+.
T Consensus 199 l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~ 261 (677)
T 3rc3_A 199 SNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWT 261 (677)
T ss_dssp HHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHH
T ss_pred HHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHH
Confidence 8775 6788888888654110 00112578888886542 246779999999999976 67888888
Q ss_pred HHHHhCC-CCceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEE
Q 014486 214 EIFKMTP-HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVV 292 (423)
Q Consensus 214 ~~~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~i 292 (423)
.++..++ ...+++++|||.+ .+..+.... .....+..... . ......... + ..+... ....+
T Consensus 262 ~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r--~-----~~l~~~~~~------l-~~l~~~-~~g~i 324 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKR--L-----TPISVLDHA------L-ESLDNL-RPGDC 324 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCC--S-----SCEEECSSC------C-CSGGGC-CTTEE
T ss_pred HHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeee--c-----chHHHHHHH------H-HHHHhc-CCCCE
Confidence 8888777 6789999999943 222222222 22222211100 0 000000000 0 011122 24568
Q ss_pred EEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhc--CCccEEEEcCccccCCCCCCCCEEEEccC-----
Q 014486 293 IFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDM----- 365 (423)
Q Consensus 293 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~ili~T~~~~~Gld~~~~~~vi~~~~----- 365 (423)
|||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++.
T Consensus 325 If~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~ 403 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSI 403 (677)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---
T ss_pred EEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccccc
Confidence 99999999999999999999999999999999999999999999 889999999999999999 8999999998
Q ss_pred ---------CCCcchhhhcccccCCCCCc---eEEEEEec
Q 014486 366 ---------PDSADTYLHRVGRAGRFGTK---GLAITFVS 393 (423)
Q Consensus 366 ---------~~s~~~~~Q~~GR~~R~g~~---~~~~~~~~ 393 (423)
|.+..+|.||+||+||.|+. |.++.++.
T Consensus 404 ~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 404 NEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp --------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 77899999999999999965 56555543
No 67
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.5e-34 Score=244.40 Aligned_cols=201 Identities=37% Similarity=0.614 Sum_probs=179.0
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC---CCCeEEEEEecC
Q 014486 47 GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHT 123 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~ 123 (423)
+|+++++++.+.+.|.+.|+..|+++|.++++.++.++++++.+|||+|||++++++++..+... ..++++||++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999877542 334589999999
Q ss_pred hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 124 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 124 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
++|+.|+.+.++++.. .+++..++|+.....+...+..+ ++|+|+||+++..++......+.++++||+||||++.
T Consensus 82 ~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999998864 46888899988877766666665 6999999999999988888888999999999999998
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeee
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 252 (423)
+ .++...+..+...+++..|++++|||+++.+..+.+.++.+|..+.+
T Consensus 158 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 S-MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp H-TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred c-cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 7 68999999999999999999999999999999999999888876543
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=253.49 Aligned_cols=202 Identities=27% Similarity=0.476 Sum_probs=174.2
Q ss_pred cCCCCcCCC--CCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC----CCCeEE
Q 014486 44 HSSGFRDFL--LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTA 117 (423)
Q Consensus 44 ~~~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~ 117 (423)
....|.+++ +++.++++|.++||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 345677777 99999999999999999999999999999999999999999999999999999765431 134489
Q ss_pred EEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEE
Q 014486 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFIL 196 (423)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVv 196 (423)
||++|+++|+.|+++.++++.... +..+..+.|+.........+..+ ++|+|+||+++..++... ...+.++++||+
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 999999999999999999988765 77888999998888777777776 699999999999877654 467889999999
Q ss_pred cCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCc
Q 014486 197 DECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM 248 (423)
Q Consensus 197 DE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 248 (423)
||||++.+ .++...+..+...++...|++++|||+++.+..+.+.++..+.
T Consensus 208 DEah~l~~-~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILD-VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHH-TTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhh-hhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999988 6899999999999999999999999999999999888776543
No 69
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.4e-32 Score=261.80 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=231.5
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 144 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 144 (423)
|+ +|++.|.-+.-.+..|+ |..+.||+|||+++.+|++.....+. .+.|++|+..||.|-++++..+...+ ++
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-gl 145 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-GL 145 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-TC
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh-CC
Confidence 44 78899988877777665 99999999999999999986665543 68999999999999999999998887 89
Q ss_pred eEEEEEcC--------------------------------------------------cchHHHHHHHhcCCCcEEEech
Q 014486 145 KVAVFYGG--------------------------------------------------VNIKIHKDLLKNECPQIVVGTP 174 (423)
Q Consensus 145 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~ilv~T~ 174 (423)
++.++... .+.. +.+..+. .+|+++|.
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-err~aY~--~DItYgTn 222 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEI-TRKEAYL--CDVTYGTN 222 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBC-CHHHHHH--SSEEEEEH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHH-HHHHHhc--CCCEEccC
Confidence 99998872 1111 1222222 39999999
Q ss_pred HHHH-HHHhcCC------CCCCCccEEEEcCcchhhcc------------CCcHH---HHHHHHHhC-------------
Q 014486 175 GRIL-ALARDKD------LSLKNVRHFILDECDKMLES------------LDMRR---DVQEIFKMT------------- 219 (423)
Q Consensus 175 ~~l~-~~~~~~~------~~~~~~~~vVvDE~h~~~~~------------~~~~~---~~~~~~~~~------------- 219 (423)
.-|- ++++.+. .-...+.+.||||+|.++-+ ..... .+..+...+
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 8763 4555332 22466889999999987621 00000 111111111
Q ss_pred -------------------------------------------CCC----------------------------------
Q 014486 220 -------------------------------------------PHD---------------------------------- 222 (423)
Q Consensus 220 -------------------------------------------~~~---------------------------------- 222 (423)
.++
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 000
Q ss_pred ---------------------------ceEEEEeccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHH
Q 014486 223 ---------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK 275 (423)
Q Consensus 223 ---------------------------~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (423)
.++.+||||+..+...+.+.+.... +.+....+.. .......+.....+|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~v--v~IPtnkp~~-R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEV--VVIPTHKPMI-RKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCE--EECCCSSCCC-CEECCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeE--EEECCCCCcc-eeecCcEEEecHHHH
Confidence 0689999999988776665554332 2222221111 111122455677778
Q ss_pred HHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCC
Q 014486 276 NRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 353 (423)
Q Consensus 276 ~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld 353 (423)
...+...+... .+.++||||++++.++.+++.|.+.|+++..+|++....++..+...++.| .|+|||++++||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 88888877653 568999999999999999999999999999999996555555455555544 69999999999999
Q ss_pred CC--------CCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCccc
Q 014486 354 IE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 397 (423)
Q Consensus 354 ~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 397 (423)
++ +..+||+++.|.|...|.||+||+||.|.+|.++.|++..++
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98 667999999999999999999999999999999999987553
No 70
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=246.84 Aligned_cols=205 Identities=26% Similarity=0.499 Sum_probs=177.1
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC----CCCCeEEEEE
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVL 120 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~lil 120 (423)
..+|+++++++.+.++|.+.|+..|+++|.++++.++.++++++.+|||+|||++|++|++..+.. ...++++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 456999999999999999999999999999999999999999999999999999999999876532 1234489999
Q ss_pred ecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC-CCCCCCccEEEEcCc
Q 014486 121 CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDEC 199 (423)
Q Consensus 121 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~vVvDE~ 199 (423)
+|+++|+.|+.+.++++.... ++++..++|+.....+...+. .++|+|+||+++...+... ...+.++++||+|||
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred eCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 999999999999999987654 688999999887766665553 3699999999999877654 466789999999999
Q ss_pred chhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhccCCceeeec
Q 014486 200 DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253 (423)
Q Consensus 200 h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 253 (423)
|++.+ .++...+..+...+++..|++++|||+++.+..+.+.++.+|..+.+.
T Consensus 181 h~~~~-~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 181 DRILD-MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHH-TTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhc-CCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99987 688999999999999999999999999999999999999888776553
No 71
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.2e-34 Score=251.48 Aligned_cols=208 Identities=28% Similarity=0.511 Sum_probs=180.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC---------CCCe
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQV 115 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---------~~~~ 115 (423)
..+|+++++++.+.++|.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+... ..++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 3569999999999999999999999999999999999999999999999999999999999875432 2235
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
++||++|+++|+.|+.+.++++.... ++.+..++|+.....+...+..+ ++|+|+||+++..++......+.++++||
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMG-CHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSC-CSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCC-CCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 89999999999999999999987664 67888999998887777766665 69999999999999988888889999999
Q ss_pred EcCcchhhccCCcHHHHHHHHHh--CCC--CceEEEEeccCCccHHHHHHHhccCCceeeeccc
Q 014486 196 LDECDKMLESLDMRRDVQEIFKM--TPH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 255 (423)
Q Consensus 196 vDE~h~~~~~~~~~~~~~~~~~~--~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 255 (423)
+||||++.+ .++...+..+... .+. ..|++++|||+++.+..+++.++.++..+.+...
T Consensus 180 iDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 180 LDEADRMLD-MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp EETHHHHHH-TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred EeCHHHHHh-CchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999988 6899999999885 343 6799999999999999999999988877765543
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.4e-33 Score=285.59 Aligned_cols=325 Identities=14% Similarity=0.134 Sum_probs=216.0
Q ss_pred CCChhhhhccccccc--------------CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAIL--------------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHE 133 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~--------------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 133 (423)
.|||+|..+++.++. +++++++++||||||+++ ++++..+...+...++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999998875 367999999999999997 55555554434445999999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC--CCCCCccEEEEcCcchhhccCCcHHH
Q 014486 134 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRD 211 (423)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~--~~~~~~~~vVvDE~h~~~~~~~~~~~ 211 (423)
+..+... .+.++.+.......+....++|+|+|+++|..++.... ..+..+.+||+||||++.. ...
T Consensus 350 f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~~ 418 (1038)
T 2w00_A 350 YQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GEA 418 (1038)
T ss_dssp HHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HHH
T ss_pred HHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hHH
Confidence 9887532 12244444555555554447999999999998776432 2356788999999998753 233
Q ss_pred HHHHHHhCCCCceEEEEeccCCccHH----HHHHHhccC-----------------Cceeeeccc-ccc----------c
Q 014486 212 VQEIFKMTPHDKQVMMFSATLSKEIR----PVCKKFMQD-----------------PMEIYVDDE-AKL----------T 259 (423)
Q Consensus 212 ~~~~~~~~~~~~~~v~~SAT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~-~~~----------~ 259 (423)
...+...++ ..+++++||||..... .....+++. |..+..... ... .
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 455666665 4789999999975321 011111111 111111000 000 0
Q ss_pred cccceEEEEEeChHHHHHHHH-HHHHhh-----------cCCcEEEEEcChhhHHHHHHHHHhCC------------CCe
Q 014486 260 LHGLVQHYIKLSELEKNRKLN-DLLDAL-----------DFNQVVIFVKSVSRAAELNKLLVECN------------FPS 315 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~-~ll~~~-----------~~~~~ivf~~~~~~~~~l~~~L~~~~------------~~~ 315 (423)
........ ......+...+. .++... .+.++||||+++..|..+++.|.+.+ +++
T Consensus 498 ~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 498 LSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 00000000 001122222322 233321 23579999999999999999997754 455
Q ss_pred E-EEcCC----------C----------CH-----------------------------HHHHHHHHhhhcCCccEEEEc
Q 014486 316 I-CIHSG----------M----------SQ-----------------------------EERLTRYKGFKEGNKRILVAT 345 (423)
Q Consensus 316 ~-~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~ili~T 345 (423)
. .+|+. + ++ ..|..++++|++|+++|||+|
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvv 656 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVV 656 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEES
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEc
Confidence 4 44542 2 22 137788999999999999999
Q ss_pred CccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCc----eEEEEEecCcccHHHHHHHHHHHh
Q 014486 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK----GLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
+++.+|+|+|.+ +++.++.|.+...|+|++||++|.+.. |.++.|+. ....+.+++..+.+
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~--~~~~l~~Al~~y~~ 721 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD--LERSTIDAITLFGD 721 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC--CHHHHHHHHHHTSC
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc--cHHHHHHHHHHHhC
Confidence 999999999999 678899999999999999999998653 66776665 34444555554443
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=247.04 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=173.3
Q ss_pred CCCCcCC----CCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEE
Q 014486 45 SSGFRDF----LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALV 119 (423)
Q Consensus 45 ~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~li 119 (423)
..+|+++ ++++.++++|.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.. ...++++||
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3456665 89999999999999999999999999999999999999999999999999999987764 234458999
Q ss_pred EecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcC--CCCCCCccEEEEc
Q 014486 120 LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILD 197 (423)
Q Consensus 120 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~~~~~~~~vVvD 197 (423)
++|+++|+.|+++.++++.... ++++..++|+..............++|+|+||+++..++... ...+.++++||+|
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 104 ISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred EeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 9999999999999999987664 677777766544333322223345799999999999988776 4678899999999
Q ss_pred Ccchhhcc--CCcHHHHHHHHHhC-CCCceEEEEeccCCccHHHHHHHhccCCceeeecc
Q 014486 198 ECDKMLES--LDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD 254 (423)
Q Consensus 198 E~h~~~~~--~~~~~~~~~~~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 254 (423)
|||++.++ .++...+..++..+ +...|++++|||+++++..+++.++.+|..+.+..
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999864 47888888887665 45789999999999999999999999888776654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=6.7e-28 Score=233.98 Aligned_cols=318 Identities=20% Similarity=0.196 Sum_probs=231.4
Q ss_pred CCCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 64 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.|+ +|+++|..+++.+++|+ +..+.||+|||+++++|++.....+. .++|++||+.||.|.++.+..+.... +
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-G 148 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-G 148 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT-T
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 488 99999999999999998 99999999999999999965444332 78999999999999999999998887 8
Q ss_pred ceEEEEEcCcchHHHHHHHhcCCCcEEEechHHH-HHHHhcCC------CCCC---CccEEEEcCcchhhccCC------
Q 014486 144 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLK---NVRHFILDECDKMLESLD------ 207 (423)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l-~~~~~~~~------~~~~---~~~~vVvDE~h~~~~~~~------ 207 (423)
+++..+.||.+....... .+ ++|+|+||+.| +++++.+. ..+. +++++|+||+|.++.+..
T Consensus 149 Lsv~~i~Gg~~~~~r~~a--y~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 149 LSVGVIQHASTPAERRKA--YL-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp CCEEECCTTCCHHHHHHH--HT-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CeEEEEeCCCCHHHHHHH--cC-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 999999999875433333 23 59999999999 78777653 4567 899999999999873211
Q ss_pred ---------cHHHHHHHHHhCCCC--------------------------------------------------------
Q 014486 208 ---------MRRDVQEIFKMTPHD-------------------------------------------------------- 222 (423)
Q Consensus 208 ---------~~~~~~~~~~~~~~~-------------------------------------------------------- 222 (423)
....+..+...++..
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 111222222222210
Q ss_pred -------------------------------------------------------------------------ceEEEEe
Q 014486 223 -------------------------------------------------------------------------KQVMMFS 229 (423)
Q Consensus 223 -------------------------------------------------------------------------~~~v~~S 229 (423)
.++.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 0688899
Q ss_pred ccCCccHHHHHHHhccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHH-hh-cCCcEEEEEcChhhHHHHHHH
Q 014486 230 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-AL-DFNQVVIFVKSVSRAAELNKL 307 (423)
Q Consensus 230 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~~-~~~~~ivf~~~~~~~~~l~~~ 307 (423)
+|...+...+.+.+......+ +...+..... ....+......|...+.+-+. .+ .+.++||.|.+++.++.+++.
T Consensus 386 GTA~tE~~Ef~~iY~l~Vv~I--PTn~p~~R~D-~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~ 462 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMDVVVV--PTNRPVIRKD-FPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQM 462 (997)
T ss_dssp SSCGGGHHHHHHHHCCCEEEC--CCSSCCCCEE-EEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCCEEEc--CCCCCccccc-CCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHH
Confidence 999887776666555543322 2222222222 223344555666665554443 22 568999999999999999999
Q ss_pred HH----------------------------------------------------------------------------hC
Q 014486 308 LV----------------------------------------------------------------------------EC 311 (423)
Q Consensus 308 L~----------------------------------------------------------------------------~~ 311 (423)
|+ +.
T Consensus 463 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (997)
T 2ipc_A 463 LKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQ 542 (997)
T ss_dssp HHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHc
Confidence 98 56
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhhhcCC-ccEEEEcCccccCCCCCCC-------------------C-------------
Q 014486 312 NFPSICIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIERV-------------------N------------- 358 (423)
Q Consensus 312 ~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~ili~T~~~~~Gld~~~~-------------------~------------- 358 (423)
|++.-+++......+ .+++.. .|. ..|-|||++++||.|+.-- .
T Consensus 543 gI~H~VLNAK~he~E-AeIIAq--AG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (997)
T 2ipc_A 543 GIPHQVLNAKHHARE-AEIVAQ--AGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAG 619 (997)
T ss_dssp CCCCCEECSSSHHHH-HHHHHT--TTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHT
T ss_pred CCCeeeccccchHHH-HHHHHh--cCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccccccc
Confidence 777778887654333 233332 333 4599999999999998532 1
Q ss_pred ------------------------------------------EEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcc
Q 014486 359 ------------------------------------------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 359 ------------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
+||-...+.|..--.|-.||+||.|.+|....|++-.+
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 620 KEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred chhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888888898889999999999999999999988644
Q ss_pred c
Q 014486 397 D 397 (423)
Q Consensus 397 ~ 397 (423)
+
T Consensus 700 d 700 (997)
T 2ipc_A 700 D 700 (997)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.8e-28 Score=200.17 Aligned_cols=155 Identities=66% Similarity=1.009 Sum_probs=145.1
Q ss_pred ccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc
Q 014486 261 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (423)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 340 (423)
..+.+.+..++...|...+..+++..+.+++||||++.+.++.+++.|...++++..+||++++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677888888899999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhhh
Q 014486 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSF 415 (423)
Q Consensus 341 ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (423)
|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|+++.++...++.+++.++..+...
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 158 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhC
Confidence 999999999999999999999999999999999999999999999999999998777888999999998776543
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.5e-27 Score=194.30 Aligned_cols=154 Identities=36% Similarity=0.607 Sum_probs=143.7
Q ss_pred cccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCc
Q 014486 260 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 339 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 339 (423)
...+.+.+..++...|...+.+++....++++||||++.+.+..+++.|...|+.+..+||++++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 35567788888889999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhh
Q 014486 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGS 414 (423)
Q Consensus 340 ~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+.+ .+...+..+++.++..+..
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-FEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTSCCEE
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH-HHHHHHHHHHHHHCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999975 5778889999999877643
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.2e-26 Score=227.16 Aligned_cols=117 Identities=22% Similarity=0.355 Sum_probs=106.4
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC-
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 365 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~- 365 (423)
.+.++||||++...++.+.+.|.+.|+++..+|+++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHH
Q 014486 366 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVS 405 (423)
Q Consensus 366 ----~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 405 (423)
|.|...|+||+||+||.+ .|.+++++++. +..+...+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~-~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV-SEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC-CHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC-CHHHHHHHH
Confidence 899999999999999985 79999888754 444444443
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=197.64 Aligned_cols=169 Identities=29% Similarity=0.497 Sum_probs=137.9
Q ss_pred hccCCceeeeccccccccccceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 243 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
++.+|..+.+.... .....+.+.+..+....|...+.+++.... +++||||+++..++.+++.|...++++..+||++
T Consensus 11 ~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 11 VDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred ccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45556666554433 344667788888888899999999987754 6899999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHH
Q 014486 323 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 402 (423)
Q Consensus 323 ~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~ 402 (423)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|++|.+++|+++..+.....
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877888888
Q ss_pred HHHHHHhcchh
Q 014486 403 QVSKFMFLLIG 413 (423)
Q Consensus 403 ~~~~~~~~~~~ 413 (423)
.+++.++....
T Consensus 169 ~l~~~l~~~~~ 179 (191)
T 2p6n_A 169 DLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHccC
Confidence 88888865443
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.1e-26 Score=189.85 Aligned_cols=152 Identities=41% Similarity=0.722 Sum_probs=133.6
Q ss_pred cceEEEEEeChHH-HHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc
Q 014486 262 GLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (423)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 340 (423)
.+.+.+..++... |...+.++++..+.+++||||++.+.++.+++.|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3456667777666 999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchhh
Q 014486 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGS 414 (423)
Q Consensus 341 ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (423)
|||||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++++ .+...+..+++.++..+..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET-TTHHHHHHHHHHSSCCCEE
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcc-hHHHHHHHHHHHHccCccc
Confidence 999999999999999999999999999999999999999999999999999985 5666788888888766543
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=6.8e-26 Score=223.49 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=106.6
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCCCCEEEEccC-
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 365 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~~~~vi~~~~- 365 (423)
.+.++||||++...++.+.+.|.+.|+++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHH
Q 014486 366 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVS 405 (423)
Q Consensus 366 ----~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~ 405 (423)
|.+...|+||+||+||. ..|.+++++++. +..+...++
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~-~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI-TKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC-CHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC-CHHHHHHHH
Confidence 99999999999999998 689999998764 343444333
No 81
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=9.9e-27 Score=191.98 Aligned_cols=154 Identities=28% Similarity=0.549 Sum_probs=137.0
Q ss_pred cccceEEEEEeChHH-HHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCC
Q 014486 260 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 338 (423)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 338 (423)
...+.+.+..++... |...+..++...+.+++||||+++..+..++..|...|+.+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 355677788887655 9999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEEEccCC------CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 339 KRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 339 ~~ili~T~~~~~Gld~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
.+|||||+++++|+|+|++++||++++| .++..|+||+||+||.|+.|.+++++.+ .+...+..+++.++..+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 8999999999999999999999999975 45778899999988765
Q ss_pred hh
Q 014486 413 GS 414 (423)
Q Consensus 413 ~~ 414 (423)
..
T Consensus 164 ~~ 165 (175)
T 2rb4_A 164 KQ 165 (175)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.7e-26 Score=194.97 Aligned_cols=148 Identities=27% Similarity=0.491 Sum_probs=135.5
Q ss_pred EEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEE
Q 014486 265 QHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 344 (423)
Q Consensus 265 ~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~ 344 (423)
......+...|...+.+++....++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlva 87 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 87 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred eeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 44556777889999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 345 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 345 T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|+++ .+...+..+++.++..+.
T Consensus 88 T~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~ 155 (212)
T 3eaq_A 88 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFK 155 (212)
T ss_dssp CTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCE
T ss_pred cChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCe
Confidence 99999999999999999999999999999999999999999999999985 567788888888876554
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=190.96 Aligned_cols=153 Identities=32% Similarity=0.538 Sum_probs=125.6
Q ss_pred ccccceEEEEEeChHHHHHHHHHHHHhh-cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcC
Q 014486 259 TLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 337 (423)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 337 (423)
....+.+.+..++...|...+.++++.. +.+++||||++...++.+++.|...|+.+..+||++++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456778888888899999999999887 468999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcch
Q 014486 338 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLI 412 (423)
Q Consensus 338 ~~~ili~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (423)
+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+++ .+...+..+.+.++...
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAK 169 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHHHHHHHTT
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999985 45566777777776443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.3e-25 Score=197.81 Aligned_cols=150 Identities=28% Similarity=0.486 Sum_probs=134.5
Q ss_pred ceEEEEEeChHHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEE
Q 014486 263 LVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342 (423)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~il 342 (423)
+.+.++.++...|...+.++++...++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 34567778888899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 343 i~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
|||+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++|+++ .+...+..+++.++..+.
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFK 152 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTCCCE
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCCcce
Confidence 9999999999999999999999999999999999999999999999999985 567778888888886654
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=7e-27 Score=191.79 Aligned_cols=149 Identities=37% Similarity=0.564 Sum_probs=134.5
Q ss_pred eEEEEEeCh-HHHHHHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEE
Q 014486 264 VQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 342 (423)
Q Consensus 264 ~~~~~~~~~-~~~~~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~il 342 (423)
.+.+..++. ..|...+..+++..+.+++||||++...++.+++.|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 344555555 6778888888888777899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHhcchh
Q 014486 343 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIG 413 (423)
Q Consensus 343 i~T~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (423)
|||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++.+ .+...+..+++.++..+.
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIK 154 (170)
Confidence 9999999999999999999999999999999999999999999999999975 466678888888877664
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=186.60 Aligned_cols=164 Identities=19% Similarity=0.190 Sum_probs=116.8
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCC---CCCeEEEEEecChHHHHH-HHHHHHHHhcc
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQ-ICHEFERFSTY 140 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q-~~~~~~~~~~~ 140 (423)
....|+++|.++++.++.++++++.+|||+|||++++++++..+... ....++||++|+++|+.| +.+.+..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 44589999999999999999999999999999999999888654321 123489999999999999 88888888654
Q ss_pred CCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCC------CCCCCccEEEEcCcchhhccCCcHHHHHH
Q 014486 141 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQE 214 (423)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~------~~~~~~~~vVvDE~h~~~~~~~~~~~~~~ 214 (423)
++++..+.|+.........+... ++|+|+||+.+...+.... ..+.++++||+||||++.....+...+..
T Consensus 110 --~~~v~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 110 --WYRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp --TSCEEECCC---CCCCHHHHHHH-CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred --CceEEEEeCCcccchhHHhhccC-CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 57888888876554443333333 5999999999998877643 55788999999999999763233333333
Q ss_pred HHHhC-------------CCCceEEEEecc
Q 014486 215 IFKMT-------------PHDKQVMMFSAT 231 (423)
Q Consensus 215 ~~~~~-------------~~~~~~v~~SAT 231 (423)
+.... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32211 257899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.4e-23 Score=203.25 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=69.0
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEE--EcCccccCCCCCC----CCEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV--ATDLVGRGIDIER----VNIV 360 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili--~T~~~~~Gld~~~----~~~v 360 (423)
.++.+|||+++...++.+.+.+.. .+ +..++.. .++.++++.|+++. .||+ +|..+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999988865 23 4455543 46788899998865 5777 7899999999997 8899
Q ss_pred EEccCCCCc------------------------------chhhhcccccCCCCCceEEEEEecCc
Q 014486 361 INYDMPDSA------------------------------DTYLHRVGRAGRFGTKGLAITFVSSA 395 (423)
Q Consensus 361 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~ 395 (423)
|++++|... ..+.|.+||+.|..++..++++.++.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 999988522 23469999999987776677777654
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=1.2e-20 Score=183.29 Aligned_cols=313 Identities=15% Similarity=0.155 Sum_probs=196.3
Q ss_pred CCChhhhhcccc----cccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCC
Q 014486 68 HPSEVQHECIPQ----AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 143 (423)
Q Consensus 68 ~~~~~Q~~~i~~----~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 143 (423)
.+||+|.+.+.. +..++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+++..+.... +
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKR-N 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSS-C
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhc-C
Confidence 689999987664 4468899999999999999999999982 2399999999999999999888776554 6
Q ss_pred ceEEEEEcCcch---------------------------------HHHH------------------HHHhcCCCcEEEe
Q 014486 144 IKVAVFYGGVNI---------------------------------KIHK------------------DLLKNECPQIVVG 172 (423)
Q Consensus 144 ~~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~~ilv~ 172 (423)
+++..+.|..+. .... +..... .+|+|+
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~-adIVV~ 154 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK-ADVIAL 154 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG-CSEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc-CCEEEe
Confidence 777777664321 0000 111122 599999
Q ss_pred chHHHHHHHhcCCCCC-CCccEEEEcCcchhhccCC--------------------------------------------
Q 014486 173 TPGRILALARDKDLSL-KNVRHFILDECDKMLESLD-------------------------------------------- 207 (423)
Q Consensus 173 T~~~l~~~~~~~~~~~-~~~~~vVvDE~h~~~~~~~-------------------------------------------- 207 (423)
|+..|+.........+ ....++|+||||.+.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999988543333332 4677899999998754 00
Q ss_pred ----------cHHH----------------------------HHHHH----------------------------HhCCC
Q 014486 208 ----------MRRD----------------------------VQEIF----------------------------KMTPH 221 (423)
Q Consensus 208 ----------~~~~----------------------------~~~~~----------------------------~~~~~ 221 (423)
+... +..++ ..+..
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 0000 00000 01112
Q ss_pred C-ceEEEEeccCCccHHHHHHHhccC-Ccee---eeccccccccccceEEEEE--eCh------HHHHHHHHHHHH---h
Q 014486 222 D-KQVMMFSATLSKEIRPVCKKFMQD-PMEI---YVDDEAKLTLHGLVQHYIK--LSE------LEKNRKLNDLLD---A 285 (423)
Q Consensus 222 ~-~~~v~~SAT~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~l~~ll~---~ 285 (423)
. ..+|++|||+.+ ...+...+... +... ...... .. ......++. .+. ......+.+.+. .
T Consensus 314 ~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~s-pf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~ 390 (551)
T 3crv_A 314 NELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQK-RV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYF 390 (551)
T ss_dssp TTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTS-CC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCC-cC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 3 689999999987 33333333222 1210 000111 11 111111211 110 111222333222 2
Q ss_pred hcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc--CccccCCCCC-----CCC
Q 014486 286 LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIE-----RVN 358 (423)
Q Consensus 286 ~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T--~~~~~Gld~~-----~~~ 358 (423)
..++.++||+++....+.+++. .+.++..-..+++. .+.++.|+.+...||+++ ..+.+|+|+| .++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 2457899999999999998862 34444443344553 446677754444799998 6999999999 378
Q ss_pred EEEEccCCCC--------------------cc----------hhhhcccccCCCCCceEEEEEecCcccH
Q 014486 359 IVINYDMPDS--------------------AD----------TYLHRVGRAGRFGTKGLAITFVSSASDS 398 (423)
Q Consensus 359 ~vi~~~~~~s--------------------~~----------~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 398 (423)
+||..++|.. .- .+.|.+||+-|..++..+++++++....
T Consensus 465 ~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~ 534 (551)
T 3crv_A 465 DVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFES 534 (551)
T ss_dssp EEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhccc
Confidence 8999887751 10 1249999999998888888888876554
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=7.7e-23 Score=182.32 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=120.7
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.|+++|.++++.++.+++.++++|||+|||++++.++...+.... .++||++|+++|+.||.++++++... +...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~-~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF-SHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSC-CGGGEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhccc-ccceEE
Confidence 799999999999999888999999999999999887776544222 28999999999999999999988643 355677
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
.+.++..... ......+|+|+||+.+... ....+.++++||+||||++.+ ..+..+...+....++++
T Consensus 190 ~~~~~~~~~~----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 190 KIGGGASKDD----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp ECSTTCSSTT----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTCCEEEE
T ss_pred EEeCCCcchh----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcCCeEEE
Confidence 7777654322 1112369999999987542 223467889999999998864 366777788777899999
Q ss_pred EeccCCccH
Q 014486 228 FSATLSKEI 236 (423)
Q Consensus 228 ~SAT~~~~~ 236 (423)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998654
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=173.20 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=118.7
Q ss_pred CCCCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC--CCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 65 ~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
....++++|.++++.+..|+++++.||||||||+++.++++......+ ...++++++|+++++.|+.+.+........
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 344689999999999999999999999999999988888776543322 244899999999999999988876654322
Q ss_pred CceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchh-hccCCcH-HHHHHHHHhCC
Q 014486 143 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKM-LESLDMR-RDVQEIFKMTP 220 (423)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~-~~~~~~~-~~~~~~~~~~~ 220 (423)
+..+..-..... ......++|+|+||+++.+++.. .+.++++||+||||.+ .+ .++. ..+..+....
T Consensus 138 ~~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~~~l~~i~~~~- 206 (235)
T 3llm_A 138 GKSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLLVVLRDVVQAY- 206 (235)
T ss_dssp TSSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHHHHHHHHHHHC-
T ss_pred CceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHHHHHHHHHhhC-
Confidence 333332221110 01112358999999999998876 4789999999999985 33 4555 3555565554
Q ss_pred CCceEEEEeccCCccH
Q 014486 221 HDKQVMMFSATLSKEI 236 (423)
Q Consensus 221 ~~~~~v~~SAT~~~~~ 236 (423)
++.|++++|||++.+.
T Consensus 207 ~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 207 PEVRIVLMSATIDTSM 222 (235)
T ss_dssp TTSEEEEEECSSCCHH
T ss_pred CCCeEEEEecCCCHHH
Confidence 4789999999999775
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=5.5e-20 Score=158.79 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=108.6
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce-E
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-V 146 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-~ 146 (423)
.|+++|.++++.++.++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ ++. +
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeE
Confidence 7899999999999999899999999999999988877664 227899999999999999988873 556 7
Q ss_pred EEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEE
Q 014486 147 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226 (423)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v 226 (423)
..+.|+... ..+|+|+|++.+...... ....+++||+||+|.+.+ ..+. .+...++ ..+++
T Consensus 162 ~~~~g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~-~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 162 GEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EEESSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT-TTHH----HHHHTCC-CSEEE
T ss_pred EEEeCCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCC-hHHH----HHHHhcc-CCEEE
Confidence 777776542 259999999998775542 124588999999999876 3333 3444444 57789
Q ss_pred EEeccCCcc
Q 014486 227 MFSATLSKE 235 (423)
Q Consensus 227 ~~SAT~~~~ 235 (423)
++|||+++.
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999999864
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.83 E-value=1.9e-19 Score=176.13 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=79.4
Q ss_pred HHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc--CccccCCCCCC
Q 014486 279 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIER 356 (423)
Q Consensus 279 l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T--~~~~~Gld~~~ 356 (423)
+.+++... ++.++||+++....+.+++.++. .... ...+++..++..+++.|+ ++..||+++ ..+.+|+|+++
T Consensus 440 i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 440 IEDIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 33444433 56799999999999999888872 2222 455566678999999999 888899997 48999999986
Q ss_pred --CCEEEEccCCCCc-----------------------------chhhhcccccCCCCCceEEEEEecCcc
Q 014486 357 --VNIVINYDMPDSA-----------------------------DTYLHRVGRAGRFGTKGLAITFVSSAS 396 (423)
Q Consensus 357 --~~~vi~~~~~~s~-----------------------------~~~~Q~~GR~~R~g~~~~~~~~~~~~~ 396 (423)
+++||..+.|... ..+.|.+||+-|..++..+++++++..
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch
Confidence 7899999988631 123699999999988888888887654
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.83 E-value=3.9e-20 Score=162.37 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=104.0
Q ss_pred ChHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhC-CCCeEEEcCCCCHHHHHHHHHhhhcC-Ccc-EEEEc
Q 014486 271 SELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVAT 345 (423)
Q Consensus 271 ~~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-ili~T 345 (423)
....|...+.+++... .+.++||||++...++.+...|... |+++..+||+++..+|..+++.|+++ ..+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456888888888776 6789999999999999999999885 99999999999999999999999998 677 78899
Q ss_pred CccccCCCCCCCCEEEEccCCCCcchhhhcccccCCCCCceEE--EEEecCc-ccHHHHHHHHHHH
Q 014486 346 DLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA-SDSDILNQVSKFM 408 (423)
Q Consensus 346 ~~~~~Gld~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~~~~--~~~~~~~-~~~~~~~~~~~~~ 408 (423)
+++++|+|++.+++||+||+||++..+.||+||++|.|+.+.| +.++... .+..+++.+.++.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~ 238 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 238 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCH
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654 4455543 3444444444443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.84 E-value=1.1e-08 Score=100.02 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=89.0
Q ss_pred ChhhhhcccccccCCceEEEccCCCcch--hHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 70 SEVQHECIPQAILGMDVICQAKSGMGKT--AVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 70 ~~~Q~~~i~~~~~~~~~ii~~~tGsGKT--~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.+.|+.+++.++.++.+++.|++|+||| +.++++.+...... .+.++++++||..++.++.+.+....... ++...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~ 228 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDE 228 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHH
Confidence 6889999999999999999999999999 55666666654322 23488999999999999988877654433 11100
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
.. .+.. ... .....++-.+|... . +.........++++||||++.+. ...+..++..++...|+|+
T Consensus 229 ~~-~~~~--~~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~-----~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 229 QK-KRIP--EDA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID-----LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CC-CSCS--CCC----BTTTSCC-------------CTTSCCSCSEEEECSGGGCB-----HHHHHHHHHTCCTTCEEEE
T ss_pred HH-hccc--hhh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC-----HHHHHHHHHhCCCCCEEEE
Confidence 00 0000 000 00012222222211 0 11111222378899999999442 4566778888888899988
Q ss_pred Eecc
Q 014486 228 FSAT 231 (423)
Q Consensus 228 ~SAT 231 (423)
+.-.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 7654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.47 E-value=1.4e-07 Score=93.43 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCChhhhhcccccccCCc-eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.+++.|++|+..++..++ .+|.||+|+|||.+..-.+.+....+ .++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 568899999999887654 79999999999987655454444432 28999999999999998887653
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.46 E-value=1.9e-05 Score=78.47 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhccC-CCc
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYL-PDI 144 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~ 144 (423)
..+++.|++++.+ .+..++|.|+.|||||.+.+--+...+...+ .+.++|++++|+..+.++.+++.+..... .++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 3689999999973 3567999999999999887655555443322 23389999999999999999998775321 244
Q ss_pred eEEEEE
Q 014486 145 KVAVFY 150 (423)
Q Consensus 145 ~~~~~~ 150 (423)
.+..++
T Consensus 86 ~v~Tfh 91 (647)
T 3lfu_A 86 WVGTFH 91 (647)
T ss_dssp EEEEHH
T ss_pred EEEcHH
Confidence 555444
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.39 E-value=4.3e-06 Score=73.44 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhh--cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc
Q 014486 272 ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 349 (423)
Q Consensus 272 ~~~~~~~l~~ll~~~--~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~ 349 (423)
...|...+.+++..+ .+.+++||++..+..+.+.++|...++.+..+.|.....++. . .++...+.+.|.+++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 456777777777665 357999999999999999999999999999999985543221 1 234555556677777
Q ss_pred cCCC-----CCCCCEEEEccCCCCcchh-hhcccccCCC--CC--ceEEEEEecCcccHHHHHHHHHHH
Q 014486 350 RGID-----IERVNIVINYDMPDSADTY-LHRVGRAGRF--GT--KGLAITFVSSASDSDILNQVSKFM 408 (423)
Q Consensus 350 ~Gld-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~--g~--~~~~~~~~~~~~~~~~~~~~~~~~ 408 (423)
-|+| +..++.||.||+.|+++.- +|++-|++|. |+ +..++-++....-..+.-.+.+.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~~ 250 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKKF 250 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHHT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCCC
Confidence 7776 6789999999999999986 9999999996 33 456777777666666555555543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.37 E-value=3.6e-06 Score=82.81 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
..+++.|..++..++.+...+|.||+|+|||.+..-.+ ..+... .+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35789999999998887779999999999998754333 332221 1238999999999999988877653
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5.9e-06 Score=83.15 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=52.8
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
..+++.|..|+..++.+.-.+|.||+|+|||.+....+...... .+.++|+++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35789999999998887778999999999998754333222211 1228999999999999999888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.26 E-value=9.5e-06 Score=81.56 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=52.0
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
.+++.|..++..++.+.-.+|.||+|+|||.+..- ++..+.... +.++++++||...+.++.+.+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~~-~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-NGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTTC-SSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHHh
Confidence 56889999999988877799999999999987543 333332212 238999999999999988877653
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.26 E-value=3e-06 Score=80.27 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCCCCChhhhhcccccccC-----CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 64 SGFEHPSEVQHECIPQAILG-----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 64 ~~~~~~~~~Q~~~i~~~~~~-----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
+.|..+++-|++++..++.. ..++|.|+.|+|||.+.. .++..+...+. ..+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGE-TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh
Confidence 45778999999999877542 379999999999997643 33333332222 26899999998877665544
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.22 E-value=4.5e-06 Score=80.82 Aligned_cols=127 Identities=18% Similarity=0.124 Sum_probs=78.7
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEE
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 147 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 147 (423)
.+++.|+.++..++.++.+++.|++|+|||.+.. .++..+...+ .++++++||...+..+.+... ....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~g--~~Vl~~ApT~~Aa~~L~e~~~--------~~a~ 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESLG--LEVGLCAPTGKAARRLGEVTG--------RTAS 257 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHTT--CCEEEEESSHHHHHHHHHHHT--------SCEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhcC--CeEEEecCcHHHHHHhHhhhc--------ccHH
Confidence 6889999999999988899999999999997643 2333332222 378999999988877655331 1111
Q ss_pred EEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEE
Q 014486 148 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 227 (423)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~ 227 (423)
.++. .+. . .++ .+.........+++|||||++.+. ...+..+...++...++++
T Consensus 258 Tih~---------ll~-----~---~~~----~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 258 TVHR---------LLG-----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp EHHH---------HTT-----E---ETT----EESCSSSSCCSCSEEEECCGGGCC-----HHHHHHHHTTSCTTCEEEE
T ss_pred HHHH---------HHc-----C---Ccc----hhhhhhcccccCCEEEEcCccCCC-----HHHHHHHHHhCcCCCEEEE
Confidence 1110 000 0 000 001111223467899999999664 3356666777777777777
Q ss_pred Eecc
Q 014486 228 FSAT 231 (423)
Q Consensus 228 ~SAT 231 (423)
+.-.
T Consensus 312 vGD~ 315 (574)
T 3e1s_A 312 VGDT 315 (574)
T ss_dssp EECT
T ss_pred Eecc
Confidence 6443
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.66 E-value=0.00046 Score=62.89 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+...+ +..++++.|+...|..+.+.++.+....|
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 789999999877644456899999999999876655554333332 33899999999999988888888776554
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.54 E-value=0.00099 Score=65.04 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=57.3
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCC
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 142 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 142 (423)
.|+|+|+..+..+...+..++..+-|+|||......++..+...+ +..++++.|+...|..+.+.++.+....|
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 579999999887644566899999999999876555554444333 33899999999999999988888876654
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.32 E-value=0.00097 Score=61.54 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=63.4
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 163 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (423)
+-.++.|+.|+|||....- .+.. . ..+|++|+++++..+.+.+.+.. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~----~~~~-~---~~lVlTpT~~aa~~l~~kl~~~~-----~~------------------ 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS----RVNF-E---EDLILVPGRQAAEMIRRRANASG-----II------------------ 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH----HCCT-T---TCEEEESCHHHHHHHHHHHTTTS-----CC------------------
T ss_pred cEEEEEcCCCCCHHHHHHH----Hhcc-C---CeEEEeCCHHHHHHHHHHhhhcC-----cc------------------
Confidence 3478999999999975422 2221 1 56999999999988877663220 00
Q ss_pred cCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 164 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 164 ~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
.. ...-+.|.++++. +.........+++||||+-.+. ...+..+....+. .+++++.-+
T Consensus 211 ~~-~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~~-----~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 VA-TKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLMLH-----TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CC-CTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGSC-----HHHHHHHHHHTTC-SEEEEEECT
T ss_pred cc-ccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccCC-----HHHHHHHHHhCCC-CEEEEecCc
Confidence 00 1334677777653 2222222347899999998542 2233333444443 556666544
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.11 E-value=0.00035 Score=69.54 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecChHHHHHHHHHHHHHhccC--CCc
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL--PDI 144 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~ 144 (423)
.+++.|++++.+. +..++|.|+.|||||.+.+--+...+.. +-...++|+++.|+..+.++.+++.+..... .++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 4789999999763 6779999999999998766545444332 1123389999999999999999998765432 245
Q ss_pred eEEEEEc
Q 014486 145 KVAVFYG 151 (423)
Q Consensus 145 ~~~~~~~ 151 (423)
.+..+++
T Consensus 80 ~v~Tfhs 86 (673)
T 1uaa_A 80 MISTFHT 86 (673)
T ss_dssp EEEEHHH
T ss_pred EEEeHHH
Confidence 6665544
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.08 E-value=0.0014 Score=53.37 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=26.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
++-.++.||+|+|||...+-.+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 45578999999999987654333332222 2788888874
No 108
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.01 E-value=0.00077 Score=67.52 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=60.6
Q ss_pred CCCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC-CCeEEEEEecChHHHHHHHHHHHHHhcc-CCCc
Q 014486 67 EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTY-LPDI 144 (423)
Q Consensus 67 ~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~ 144 (423)
..+++.|++++.+ ....++|.|+.|||||.+.+--+...+...+ ...++|+++.|+..|.++.+++.+.... ..++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 3689999999976 3567999999999999886655554443222 3348999999999999999998876432 1245
Q ss_pred eEEEEEc
Q 014486 145 KVAVFYG 151 (423)
Q Consensus 145 ~~~~~~~ 151 (423)
.+..+++
T Consensus 88 ~v~Tfhs 94 (724)
T 1pjr_A 88 WISTFHS 94 (724)
T ss_dssp EEEEHHH
T ss_pred EEeeHHH
Confidence 6665543
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.96 E-value=0.00082 Score=55.47 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
|+-.++.|++|+|||...+-.+......+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 334678999999999876555444433332 7899998763
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00071 Score=56.72 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=50.4
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 162 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (423)
|.-.++.|++|+|||...+-.+......+. +++++.|...-. . ........ ++ .
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r---~--~~~i~srl-G~---------~-------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR---S--IRNIQSRT-GT---------S-------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG---G--CSSCCCCC-CC---------S--------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch---H--HHHHHHhc-CC---------C--------
Confidence 344788999999999876554444433322 778887765210 0 00011110 10 0
Q ss_pred hcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhh
Q 014486 163 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 203 (423)
Q Consensus 163 ~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~ 203 (423)
...+.+.+...+...+.... .-...++||+||++.+.
T Consensus 66 ---~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ---ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 01344556666666555432 22457899999999754
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.94 E-value=0.0013 Score=53.37 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.8
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
++.+++.||+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 677999999999999754
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.80 E-value=0.0041 Score=56.00 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=24.1
Q ss_pred CChhhhhccccccc----C---CceEEEccCCCcchhHHHH
Q 014486 69 PSEVQHECIPQAIL----G---MDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~----~---~~~ii~~~tGsGKT~~~~~ 102 (423)
++|+|..++..+.. + +..++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 35777777655442 2 3489999999999987654
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0024 Score=52.13 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=26.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
|+-.++.||+|+|||...+-.+......+ .+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 44578999999999987654444333222 2789998874
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.77 E-value=0.0016 Score=69.15 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCChhhhhcccccccCCceEEEccCCCcchhHHHHHHhhccCCCC---CCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.... ...+++++++|++.+..+.+++....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 6899999999764 789999999999999987666666555432 33489999999999999998887643
No 115
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.66 E-value=0.0021 Score=53.63 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
|+-.++.|++|+|||...+-.+......+. +++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 445788999999999876655554443332 7899888753
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.62 E-value=0.0014 Score=53.89 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=25.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
|.-.++.|++|+|||...+-.+ .++...+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~~g--~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIYAK--QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHHTT--CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHHcC--CceEEEEeccC
Confidence 3447899999999997655444 3333222 27899999753
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.019 Score=50.87 Aligned_cols=19 Identities=5% Similarity=-0.151 Sum_probs=16.0
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+.++++.||+|+|||.+.-
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 118
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.55 E-value=0.0051 Score=59.78 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCChhhhhccccccc--CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCce
Q 014486 68 HPSEVQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 145 (423)
Q Consensus 68 ~~~~~Q~~~i~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 145 (423)
.++..|++++..++. ....++.|+-|.|||.+.-+.+..... .++|..|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~------~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG------RAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS------CEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh------CcEEECCCHHHHHHHHH----HhhC-----
Confidence 578899999987776 334799999999999665544443321 46999999876654433 2211
Q ss_pred EEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceE
Q 014486 146 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 225 (423)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (423)
.+-+..|+.+.. .....+++|||||=.+ -.+.+..+....+ .
T Consensus 240 ----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI-----p~pll~~ll~~~~----~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI-----PAPLLHQLVSRFP----R 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS-----CHHHHHHHHTTSS----E
T ss_pred ----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC-----CHHHHHHHHhhCC----e
Confidence 133345665432 2234789999999854 3445555555332 5
Q ss_pred EEEeccC
Q 014486 226 MMFSATL 232 (423)
Q Consensus 226 v~~SAT~ 232 (423)
+++|.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 7777775
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.47 E-value=0.0021 Score=54.72 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.012 Score=52.54 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
++.+++.||+|+|||..+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999764
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.33 E-value=0.017 Score=48.12 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
....+||+||+|.+.. .....+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998754 334455666666555665665543
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.32 E-value=0.0049 Score=49.98 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=25.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
++=.++.||+|+|||.-.+-.+-.....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 44578999999999965444443333322 278999887
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.09 E-value=0.028 Score=52.00 Aligned_cols=56 Identities=13% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCccEEEEcCcchhh--ccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhc
Q 014486 189 KNVRHFILDECDKML--ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~--~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
.++++||+|++-+.. .+..+...+..+.....+..-++.++|+...+....+..+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 467899999998764 43456667777777776677778888887666555555443
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.06 E-value=0.032 Score=52.15 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.3
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
.+.+++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999754
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.04 E-value=0.041 Score=49.07 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=24.2
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
..+++++||+|.+.. ......+..++...+...++|+.|
T Consensus 105 ~~~vliiDEi~~l~~-~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-AESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGG-HHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCc-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 568899999998862 133444555555544455555544
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0072 Score=47.16 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.3
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999754
No 127
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.94 E-value=0.019 Score=51.32 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=33.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHhCCCCCCChhhhh-ccc-ccccCCceEEEccCCCcchhHH
Q 014486 43 IHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHE-CIP-QAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~i~-~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.....|+++.-.+.+.+.|...=. .|.... .+. .....+.+++.||+|+|||..+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344568888877888777775411 111110 000 1122456999999999999765
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.87 E-value=0.023 Score=43.95 Aligned_cols=38 Identities=5% Similarity=0.135 Sum_probs=23.9
Q ss_pred cEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEecc
Q 014486 192 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 231 (423)
Q Consensus 192 ~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT 231 (423)
+.+++||+|.+.. .....+..++...+...++|+.|..
T Consensus 78 g~l~ldei~~l~~--~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR--EQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH--HHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCH--HHHHHHHHHHhhcCCCEEEEEECCc
Confidence 4699999998854 3444555555555555666655544
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.16 Score=45.86 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=29.1
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
.+.+++|+||+|.+. ......+.+.+...+....+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLT--KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSC--HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccC--HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 467899999999853 3445566666766666666666665544
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.066 Score=46.66 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=31.6
Q ss_pred CCCCcCCCCCHHHHHHHHhCC---CCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...|+++.-.+.+.+.|...- ...+..++.. .+...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKV---GIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH---CCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCCeEEEECCCCCcHHHHH
Confidence 445777877777777766431 0011111111 1234567999999999999764
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.44 E-value=0.026 Score=49.93 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.++++.||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999765
No 132
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.37 E-value=0.054 Score=47.79 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
.+.+++|+||+|.+.. .....+.+.++.-++...+|+++
T Consensus 81 ~~~kvviIdead~lt~--~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ--QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCH--HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCH--HHHHHHHHHHhCCCCCeEEEEEE
Confidence 4678999999999864 33445666666655566566655
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.24 E-value=0.044 Score=50.11 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999764
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.16 E-value=0.16 Score=43.82 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
+.+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 569999999999998653
No 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.08 E-value=0.2 Score=46.37 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=31.9
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhc
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
++++||+|.+=+...+......+..+.....+..-++.+.|+...+....+..+.
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~ 236 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFK 236 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHH
Confidence 3567888888654332234444555555555565677777776655555444443
No 136
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.00 E-value=0.082 Score=43.35 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
+.+++.||+|+|||..+-
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997643
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.093 Score=47.92 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 346999999999999764
No 138
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.77 E-value=0.035 Score=50.15 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=26.2
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
...++|++||+|.+.. .....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~--~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA--DAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCH--HHHHHHHHHHHhcCCCceEEEEeC
Confidence 3557999999998854 334556666666665665666543
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.59 E-value=0.16 Score=42.98 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=29.8
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
.|.-+++.||+|+|||...+..+......+. +++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEcc-CCHHHHHHHHH
Confidence 4566899999999999865443333332222 56666543 23445555444
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.54 E-value=0.048 Score=49.92 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999764
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.074 Score=47.29 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
...++||+||+|.+.. .....+..++...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998854 334455666666555666665543
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.23 E-value=0.11 Score=51.96 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=64.6
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-cccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~~~Gld~~~~~~vi 361 (423)
.+.+++|.+++...+.++++.+++ .++++..++|+++..++...+....+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 357899999999988888777654 3789999999999999999999999999999999954 44567788888877
Q ss_pred Ecc
Q 014486 362 NYD 364 (423)
Q Consensus 362 ~~~ 364 (423)
.-.
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 533
No 143
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.20 E-value=0.39 Score=42.85 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=28.5
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..|+++.-.+...+.+... -..+...-....++++.||+|+|||..+
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~--------l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVF--------IAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHH--------HHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHH--------HHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 344677777666666655432 0000000012346999999999999764
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.12 E-value=0.061 Score=49.08 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999754
No 145
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.06 E-value=0.77 Score=40.57 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=27.4
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..|+++.-.+...+.+... .+. +...-.....+++.||+|+|||..+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~-------l~~-~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVY-------LEA-AKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHH-------HHH-HHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cccHHHhhCHHHHHHHHHHH-------HHH-HHccCCCCCcEEEECCCCCCHHHHH
Confidence 34567776666655555421 000 0000012357999999999999754
No 146
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.92 E-value=0.13 Score=46.14 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=27.1
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
...+++|+||+|.+.. .....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3578999999998854 34455666677766666666554
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.80 E-value=0.41 Score=43.33 Aligned_cols=40 Identities=8% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 189 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
....+||+||+|.+.. .....+.+.+...+....+|+.|.
T Consensus 118 ~~~~vliiDe~~~l~~--~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCH--HHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CCeEEEEEECcchhcH--HHHHHHHHHHhcCCCceEEEEEeC
Confidence 4567999999998754 334445555555555554555543
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.53 E-value=0.088 Score=46.61 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=28.2
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..|+++.-.+...+.+... +. . -...++++.||+|+|||..+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~-l~------~------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGY-VE------R------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTT-TT------T------TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHH-Hh------C------CCCCeEEEECcCCcCHHHHH
Confidence 345577776667777766643 10 0 01124999999999999754
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.48 E-value=0.099 Score=48.83 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.8
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999764
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.45 E-value=0.33 Score=40.63 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=23.2
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
.-.+||+||+|.+.. .....+...+...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH--HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH--HHHHHHHHHHhcCCCceEEEEEeC
Confidence 456899999998743 333444455554444555555543
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.41 E-value=0.085 Score=46.81 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=24.8
Q ss_pred CccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEec
Q 014486 190 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 230 (423)
Q Consensus 190 ~~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SA 230 (423)
...+||+||+|.+.. .....+...+...+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--GAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCH--HHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCH--HHHHHHHHHHhccCCCceEEEEeC
Confidence 367999999998754 223344555555555666666553
No 152
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.16 E-value=0.35 Score=38.51 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=54.5
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++..+..+++.+... ++.+..++|+.+..... ..+.++..+|+|+|.- -...+++.+++
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~Gid~~~~~ 104 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CARGIDVKQVT 104 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CCTTTCCTTEE
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hhcCCCcccCC
Confidence 8999999999999888877653 67899999987765544 4456677899999942 13466778888
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-+
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888543
No 153
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.02 E-value=0.84 Score=36.91 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=54.9
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.++.. ++.+..++|+.+..... ..+.++..+|+|+|. .+ ...+++.+++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~~-----~~Gldi~~v~ 124 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-VA-----SKGLDFPAIQ 124 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-HH-----HTTCCCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-ch-----hcCCCcccCC
Confidence 7999999999999998888765 67889999987665443 445567789999993 22 2366778888
Q ss_pred EEEEcCc
Q 014486 193 HFILDEC 199 (423)
Q Consensus 193 ~vVvDE~ 199 (423)
+||.-+.
T Consensus 125 ~VI~~d~ 131 (191)
T 2p6n_A 125 HVINYDM 131 (191)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8886443
No 154
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.87 E-value=0.5 Score=44.45 Aligned_cols=75 Identities=17% Similarity=0.149 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccccCCCCCC
Q 014486 277 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 356 (423)
Q Consensus 277 ~~l~~ll~~~~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~~Gld~~~ 356 (423)
..+...++. .+.++|+.+.+...++.+.+.|.+.++++...... . .+.. ..|.|+...+..|+-+|.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~--g~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASD--RGRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCT--TCEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCC--CcEEEEEcccccCcccCC
Confidence 344444433 24689999999999999999999988876544321 1 1222 356677778899999998
Q ss_pred CCEEEEcc
Q 014486 357 VNIVINYD 364 (423)
Q Consensus 357 ~~~vi~~~ 364 (423)
.+.+|..+
T Consensus 439 ~klaVITE 446 (483)
T 3hjh_A 439 RNLALICE 446 (483)
T ss_dssp TTEEEEEH
T ss_pred CCEEEEEc
Confidence 88877643
No 155
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.80 E-value=0.28 Score=45.24 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=62.4
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc----cCCCCCCCCE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG----RGIDIERVNI 359 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~----~Gld~~~~~~ 359 (423)
.+.++||.+|++..+.++++.++. .++.+..++|+.+..++......+..++.+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 557899999999999999999988 588999999999998888888888888899999995321 1145556777
Q ss_pred EEEc
Q 014486 360 VINY 363 (423)
Q Consensus 360 vi~~ 363 (423)
||.-
T Consensus 143 iViD 146 (414)
T 3oiy_A 143 VFVD 146 (414)
T ss_dssp EEES
T ss_pred EEEe
Confidence 7653
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.73 E-value=0.18 Score=47.15 Aligned_cols=50 Identities=20% Similarity=0.072 Sum_probs=28.6
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
.|.-++|.|++|+|||...+-.+.......+. .++++..- .-..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~--~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGV--GVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC--CEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEECC-CCHHHHHHHH
Confidence 34558999999999997655444443332221 56776542 2233444443
No 157
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.66 E-value=0.25 Score=47.11 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCccEEEEcCcchhhcc-CCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 189 KNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 189 ~~~~~vVvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
....+|++||+|.+... ......+..+... ...++|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 34568999999998652 1222444444444 2445777777643
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.56 E-value=0.21 Score=46.89 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=24.4
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.|.-++|.|++|+|||...+..+.......+. .++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~--~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNE--NVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC--CEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC--cEEEEEC
Confidence 35568999999999997655444433322221 5677663
No 159
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.057 Score=49.94 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=37.8
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+|++.+--+.+.+.|.+. .+.+|-.++...++ ..+.+++.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 345799998888887777754 23345555554443 2467999999999999754
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.40 E-value=1.8 Score=35.01 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=68.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 161 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (423)
...+++..++|.|||.+++-.++..+..+. +++++.=.+. ....=.+.+..+ ++.+.....+.........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH-----GVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG-----TCEEEECCTTCCCCGGGHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC-----CcEEEEcccccccCCCCcH
Confidence 346899999999999998877777766544 6777732211 000000111111 1222211111110000000
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCCCCCCccEEEEcCcchhhc-cCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHH
Q 014486 162 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE-SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 239 (423)
Q Consensus 162 ~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vVvDE~h~~~~-~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~ 239 (423)
-... . .-..|....+ .+.-..+++||+||+-.... ..--...+..++...+...-+|+.+-.+|+++...
T Consensus 100 ~~~~--~----a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 100 ADTA--A----CMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHH--H----HHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHH--H----HHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 0000 0 0111111111 12225688999999976433 12234556666666666666777666677666554
No 161
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.31 E-value=0.31 Score=43.31 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCC------------CCC-CeEEEEEecChHH-HHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEP------------NPG-QVTALVLCHTREL-AYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~------------~~~-~~~~lil~P~~~L-~~q~~~~~~~~ 137 (423)
|.-+++.|++|+|||...+-.+...... ++. ..+++|+.-...+ ..++.+.++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 3458999999999997665544432211 111 1478888754432 44444444443
No 162
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.05 E-value=1.4 Score=34.47 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=60.8
Q ss_pred chhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEe
Q 014486 96 KTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVG 172 (423)
Q Consensus 96 KT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~ 172 (423)
|.. .+..++.... ..++||.++++.-+..+++.+... ++.+..++|+.+..... ..+.++..+|+|+
T Consensus 17 K~~-~l~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 86 (165)
T 1fuk_A 17 KYE-CLTDLYDSIS----VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 86 (165)
T ss_dssp HHH-HHHHHHHHTT----CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHH-HHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 543 3444555432 228999999999999988887764 67888999987655443 4455677899999
Q ss_pred chHHHHHHHhcCCCCCCCccEEEEcCc
Q 014486 173 TPGRILALARDKDLSLKNVRHFILDEC 199 (423)
Q Consensus 173 T~~~l~~~~~~~~~~~~~~~~vVvDE~ 199 (423)
|.- -...+++.++++||.-+.
T Consensus 87 T~~------~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 87 TDL------LARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EGG------GTTTCCCCSCSEEEESSC
T ss_pred cCh------hhcCCCcccCCEEEEeCC
Confidence 942 134567778888876443
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.83 E-value=0.41 Score=45.18 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
...+++.||+|+|||+.+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 466999999999999865
No 164
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.76 E-value=0.61 Score=37.50 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=53.4
Q ss_pred CcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH---HHHHhcCCCcEE
Q 014486 94 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQIV 170 (423)
Q Consensus 94 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~il 170 (423)
+.|-. .+.-++.... ...++||.++++.-+..+++.++.. ++.+..++|+.+.... ...+.++..+|+
T Consensus 30 ~~K~~-~L~~ll~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 30 SDKRS-FLLDLLNATG---KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred HHHHH-HHHHHHHhcC---CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 45653 3444555432 2238999999999999988887763 6788889987654433 344556778999
Q ss_pred EechHHHHHHHhcCCCCCCCccEEEEcC
Q 014486 171 VGTPGRILALARDKDLSLKNVRHFILDE 198 (423)
Q Consensus 171 v~T~~~l~~~~~~~~~~~~~~~~vVvDE 198 (423)
|+|. .+ ...+++.++++||.=+
T Consensus 101 vaT~-~~-----~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VATA-VA-----ARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEC------------CCCSBSEEEESS
T ss_pred EEcC-hh-----hcCCCcccCCEEEEeC
Confidence 9993 22 2355677888887643
No 165
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.59 E-value=2.4 Score=33.44 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=62.6
Q ss_pred CcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEE
Q 014486 94 MGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIV 170 (423)
Q Consensus 94 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~il 170 (423)
..|.. .+..++.... ..++||.|+++.-+..+++.+... ++.+..++|+....... ..+.++..+|+
T Consensus 16 ~~K~~-~L~~ll~~~~----~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vL 85 (172)
T 1t5i_A 16 NEKNR-KLFDLLDVLE----FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 85 (172)
T ss_dssp GGHHH-HHHHHHHHSC----CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred HHHHH-HHHHHHHhCC----CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEE
Confidence 34543 3444554432 227999999999999988888764 67889999987665443 44556778999
Q ss_pred EechHHHHHHHhcCCCCCCCccEEEEcCcc
Q 014486 171 VGTPGRILALARDKDLSLKNVRHFILDECD 200 (423)
Q Consensus 171 v~T~~~l~~~~~~~~~~~~~~~~vVvDE~h 200 (423)
|+|.- -...+++.++++||.-+..
T Consensus 86 vaT~~------~~~Gldi~~~~~Vi~~d~p 109 (172)
T 1t5i_A 86 VATNL------FGRGMDIERVNIAFNYDMP 109 (172)
T ss_dssp EESSC------CSTTCCGGGCSEEEESSCC
T ss_pred EECCc------hhcCcchhhCCEEEEECCC
Confidence 99942 2345677888888865543
No 166
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.45 E-value=4 Score=36.21 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=23.2
Q ss_pred cEEEEcCcchhhc--cCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 192 RHFILDECDKMLE--SLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 192 ~~vVvDE~h~~~~--~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
-+||+||+|.+.. ...+...+..+....+ ...+|+.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4799999999864 2456666666665542 34444443
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.077 Score=48.35 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=36.2
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+|++.+=-+.+.+.|.+. .+.+|-.++...++ ..+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHHH
Confidence 446788888677777777654 23344444444432 2467999999999999754
No 168
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.93 E-value=4.6 Score=31.35 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=55.3
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.++++..+..+++.+... ++.+..++|+.+..... ..+.++..+|+|+|.- + ...+++.+++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~Gld~~~~~ 105 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-A-----ARGIDIENIS 105 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-G-----TTTCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-h-----hcCCchhcCC
Confidence 7899999999999988888764 67899999987655443 4455677899999932 2 3467788888
Q ss_pred EEEEcCc
Q 014486 193 HFILDEC 199 (423)
Q Consensus 193 ~vVvDE~ 199 (423)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8887554
No 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.84 E-value=0.55 Score=41.08 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=16.5
Q ss_pred cCCceEEEccCCCcchhHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~ 102 (423)
.++.+++.|++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 355688999999999986544
No 170
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.72 E-value=1.2 Score=36.76 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=54.2
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+... ++.+..++|+.+..... ..+.++..+|+|+|.- -...+++.+++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gidi~~v~ 101 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV------AARGLDIPQVD 101 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT------TTCSSSCCCBS
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh------hhcCCCCccCc
Confidence 8999999999999988888765 67889999998765554 3456677899999932 23467788888
Q ss_pred EEEE
Q 014486 193 HFIL 196 (423)
Q Consensus 193 ~vVv 196 (423)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
No 171
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.04 E-value=1.8 Score=41.58 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=58.6
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.|+++.-+..+++.+.+.... ++.+..++|+....... ..+.++..+|+|+|.- -...+++.++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v 411 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 411 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCCcccC
Confidence 38999999999999999988876432 67899999988765543 4455677899999952 2346788889
Q ss_pred cEEEEcCc
Q 014486 192 RHFILDEC 199 (423)
Q Consensus 192 ~~vVvDE~ 199 (423)
++||.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 98886554
No 172
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.02 E-value=6.4 Score=38.68 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=65.7
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+.+. ++++..++|+......... +.++..+|+|+|.- -...+++.+++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~------l~~GlDip~v~ 515 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL------LREGLDIPEVS 515 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC------CSTTCCCTTEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch------hhCCcccCCCC
Confidence 8999999999999888888765 6788888988765555443 55677899999852 24567888999
Q ss_pred EEEEcCcchhhccCCcHHHHHHHHHh
Q 014486 193 HFILDECDKMLESLDMRRDVQEIFKM 218 (423)
Q Consensus 193 ~vVvDE~h~~~~~~~~~~~~~~~~~~ 218 (423)
+||+-+++...-..+...-++++-+.
T Consensus 516 lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 516 LVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp EEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred EEEEeCcccccCCCCHHHHHHHhCcc
Confidence 99999987543212334444444443
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.99 E-value=0.42 Score=43.93 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.1
Q ss_pred CceEE--EccCCCcchhHH
Q 014486 84 MDVIC--QAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii--~~~tGsGKT~~~ 100 (423)
..++| .||+|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45788 899999999764
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.91 E-value=0.2 Score=44.74 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=29.7
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
..|.-+++.|++|+|||..++-.+...... +..++|++.- .-..|+..++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS-SCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC-CCHHHHHHHH
Confidence 345559999999999997655444443332 2267777642 2334444444
No 175
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.79 E-value=1.1 Score=47.38 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEc-CccccCCCCCCCCEEE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIERVNIVI 361 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T-~~~~~Gld~~~~~~vi 361 (423)
.+.+++|.+++...+.++++.+++ .+..+..+++..+..++...++....|..+|+|+| ..+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999888887764 35788899999999999999999999999999999 4455567777787776
Q ss_pred E
Q 014486 362 N 362 (423)
Q Consensus 362 ~ 362 (423)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.74 E-value=0.72 Score=46.20 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...|++.+=-+...+.|.+. .+.+|..++...+ ...+.+++.||+|+|||+.+
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~---~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC---CCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC---CCCCeEEEECCCCCCHHHHH
Confidence 44577665333333334332 2233444443322 12367999999999999754
No 177
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.67 E-value=0.13 Score=39.50 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=15.5
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.+.++++.||+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 456799999999999964
No 178
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.35 E-value=0.42 Score=52.63 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=28.6
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
++++++.+|+|+|||..+...+.+....+. +++++..-..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEcccc
Confidence 577999999999999877665555444322 6777775543
No 179
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.30 E-value=0.13 Score=47.48 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=35.1
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+|++.+--+.+.+.|... .+.+|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 445788887666766666543 2233444444333 23467999999999999764
No 180
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=89.27 E-value=2.8 Score=38.28 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=54.3
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.++++..+..+++.+.+. ++.+..++|+....... ..+.++..+|+|+|.- -...+++.++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gidip~v 345 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV------AARGLDISNV 345 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH------HHTTSCCCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh------hhcCCCcccC
Confidence 38999999999999988888764 67899999988765443 3455677899999951 1346778888
Q ss_pred cEEEE
Q 014486 192 RHFIL 196 (423)
Q Consensus 192 ~~vVv 196 (423)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 181
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=88.40 E-value=6.7 Score=37.82 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=59.2
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.|+++.-+..+++.+.+... .++.+..++|+....... ..+.++..+|+|+|.- -...+++.++
T Consensus 289 ~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiDip~v 360 (579)
T 3sqw_A 289 YKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNV 360 (579)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTC
T ss_pred CcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCCcccC
Confidence 3899999999999999998887653 267899999987765543 4455677899999952 2346788889
Q ss_pred cEEEEcCcc
Q 014486 192 RHFILDECD 200 (423)
Q Consensus 192 ~~vVvDE~h 200 (423)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998866543
No 182
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.29 E-value=0.9 Score=47.59 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=62.7
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHh---CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCccc-c---CCCCCCCCE
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG-R---GIDIERVNI 359 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~~-~---Gld~~~~~~ 359 (423)
.+.++||.++++..+.++++.++. .++.+..++|+.+..++...+..+..|..+|+|+|.-.- . -+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 457899999999999999999988 567899999999988888888888999999999995211 1 144567887
Q ss_pred EEEcc
Q 014486 360 VINYD 364 (423)
Q Consensus 360 vi~~~ 364 (423)
+|.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 77533
No 183
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.12 E-value=0.22 Score=44.21 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=31.6
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
....|++.+-.+.+.+.|... ....+..++. .....+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT----TCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC----CCCCCceEEEECCCCccHHHHH
Confidence 345688887777776666643 1111111110 1122367999999999999764
No 184
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.10 E-value=0.7 Score=38.19 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=53.0
Q ss_pred CcEEEEEcChhhHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c-----ccCCCCCCC
Q 014486 289 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 357 (423)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~-----~~Gld~~~~ 357 (423)
.++||.++++..+..+.+.++.. +..+..++|+.+....... +..+..+|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 47999999999999988887664 6888899999887665544 34466789999942 1 234667778
Q ss_pred CEEEE
Q 014486 358 NIVIN 362 (423)
Q Consensus 358 ~~vi~ 362 (423)
+++|.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87775
No 185
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.09 E-value=1.1 Score=42.85 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=54.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~ 346 (423)
.+.+||.++.+..+....+.|...|+++..+++..+..++..+......+..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999998888888899999999984
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.88 E-value=0.17 Score=44.49 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=32.5
Q ss_pred ccCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 43 IHSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.....|+++.-.+.+.+.|... ....|..++.. .+..++.+++.||+|+|||+.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHH
Confidence 3455688887667766666643 01111111111 1234567999999999999764
No 187
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.82 E-value=0.2 Score=46.21 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=34.3
Q ss_pred CCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+|++.+--+.+.+.|... .+.+|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 45788887666766666543 2223334444333 23467999999999999764
No 188
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.73 E-value=3.4 Score=34.83 Aligned_cols=115 Identities=9% Similarity=0.082 Sum_probs=69.4
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-----c--ccCCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----V--GRGIDIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-----~--~~Gld~~~ 356 (423)
..++||.++++..+..+++.++.. ++.+..++|+.+.......+. +..+|+|+|.- + ..++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888777654 788899999988666544332 46789999942 1 13567778
Q ss_pred CCEEEEccCC----CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 357 VNIVINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 357 ~~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|.-..- ++....+..+-+..+. ..-+++++........+.+++++.
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~v~~~~~~~l~ 240 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIPR---DRKTFLFSATMTKKVQKLQRAALK 240 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSCS---SSEEEEEESSCCHHHHHHHHHHCS
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCCC---CCeEEEEeccCCHHHHHHHHHHCC
Confidence 8877753211 1121122222222221 223445555555666666665554
No 189
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=87.65 E-value=8.2 Score=34.71 Aligned_cols=76 Identities=9% Similarity=0.194 Sum_probs=58.0
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.++++.-+..+++.+++. +..+..++|+.+..... +.+.++..+|+|+|.- -...+++.++
T Consensus 244 ~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~ 312 (395)
T 3pey_A 244 GSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LARGIDIPTV 312 (395)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GSSSCCCTTE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhcCCCcccC
Confidence 38999999999999988888764 66888999987655443 4455677899999952 2456788899
Q ss_pred cEEEEcCcch
Q 014486 192 RHFILDECDK 201 (423)
Q Consensus 192 ~~vVvDE~h~ 201 (423)
++||.-+...
T Consensus 313 ~~Vi~~~~p~ 322 (395)
T 3pey_A 313 SMVVNYDLPT 322 (395)
T ss_dssp EEEEESSCCB
T ss_pred CEEEEcCCCC
Confidence 9998766553
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.31 E-value=0.36 Score=42.19 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=30.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhh-hccccc-ccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQH-ECIPQA-ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~i~~~-~~~~~~ii~~~tGsGKT~~~ 100 (423)
...|+++.-.+.+.+.|...-. .+... +.+..+ ...+.+++.||+|+|||..+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4467777767777777664310 01100 011111 12567999999999999764
No 191
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.11 E-value=0.3 Score=44.83 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=35.6
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...+|++.+=-+.+.+.|.+. .+.+|-.++...++ ..+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 345788887666666666653 23344445444432 2467999999999999754
No 192
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.99 E-value=1.4 Score=40.27 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=24.5
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCC---CCCCeEEEEEecC
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHT 123 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 123 (423)
.-+.|.||+|+|||......++....+ ++...+++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 458899999999997665333333322 1122367777643
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.86 E-value=1.8 Score=41.91 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=53.8
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhh--hcCCccEEEEcC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGF--KEGNKRILVATD 346 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~ili~T~ 346 (423)
..+.+||.++++..+....+.|...|+.+..++|+++..++..++... ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 357899999999999999999999999999999999999988888877 467889999996
No 194
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.59 E-value=0.57 Score=41.12 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=28.3
Q ss_pred ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHH
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 127 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 127 (423)
-+++.+|+|+|||...+-.+........ +.+++++..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccchhh
Confidence 5789999999999876655544443211 22888888665553
No 195
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.57 E-value=0.39 Score=41.02 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=27.6
Q ss_pred CCcCCCCCHHHHHHHHhC--CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 47 GFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.|+++.-.+.+.+.+.+. .+..+..+.... +...+.+++.||+|+|||..+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 466666556666655532 011122222211 123466999999999999764
No 196
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.53 E-value=12 Score=36.87 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=64.7
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHH---HhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++..+..+.+.+.+. ++++..++++......... +.++..+|+|+|.- -...+++.+++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~~GlDip~v~ 509 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LREGLDIPEVS 509 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CCTTCCCTTEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hhcCccCCCCC
Confidence 8999999999999888887764 6788888888765555443 56677899999832 14567888999
Q ss_pred EEEEcCcchhhccCCcHHHHHHHHHh
Q 014486 193 HFILDECDKMLESLDMRRDVQEIFKM 218 (423)
Q Consensus 193 ~vVvDE~h~~~~~~~~~~~~~~~~~~ 218 (423)
+||+=+++...-..+....++.+-+.
T Consensus 510 lVI~~d~d~~G~p~s~~~~iQr~GRa 535 (664)
T 1c4o_A 510 LVAILDADKEGFLRSERSLIQTIGRA 535 (664)
T ss_dssp EEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred EEEEeCCcccCCCCCHHHHHHHHCcc
Confidence 99988876542212334444444443
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.17 E-value=0.24 Score=44.71 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=30.7
Q ss_pred CCCCcCCCCCHHHHHHHHhCC---CCCCChhhhhcccccccCCceEEEccCCCcchhHHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
...|+++.-.+.+.+.|...= ...+..++. .....+.+++.||+|+|||..+-
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG----NRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS----SCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc----CCCCCceEEEECCCCCcHHHHHH
Confidence 456777766666666665431 011111111 11224679999999999998653
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.06 E-value=0.63 Score=42.86 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=22.0
Q ss_pred hhhccccccc--CCceEEEccCCCcchhHHHHHHhhccCC
Q 014486 73 QHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEP 110 (423)
Q Consensus 73 Q~~~i~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~ 110 (423)
+..++..++. +.-+++.||||||||... -.++..+..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~ 193 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNS 193 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCC
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCC
Confidence 3344444333 344899999999999753 334444433
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.06 E-value=1.2 Score=39.46 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=31.2
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCC---CCCeEEEEEecChHH-HHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTREL-AYQICHEFER 136 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L-~~q~~~~~~~ 136 (423)
|.-+++.||+|+|||...+..+....... +.+.+++++.-...+ ..++.+.+++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45589999999999986655444433321 112377887654322 3444444443
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.04 E-value=9.8 Score=32.99 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=15.6
Q ss_pred cCCceEEEccCCCcchhHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~ 102 (423)
.++-+.+.++.|+|||.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 455577779999999976433
No 201
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.83 E-value=0.67 Score=43.09 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=29.3
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 128 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 128 (423)
...++++.|+||+|||... ..++..+...+ ..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g--~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG--DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT--CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC--CcEEEEeCCCchhH
Confidence 4578999999999999874 23333332222 26777778777643
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.82 E-value=0.27 Score=45.54 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=35.5
Q ss_pred cCCCCcCCCCCHHHHHHHHhC---CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDS---GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+|++.+--+.+.+.|.+. .+.+|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 345788888777777777654 1223333333332 23567999999999999754
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.68 E-value=0.37 Score=39.45 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.6
Q ss_pred ccccCCceEEEccCCCcchhHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
++..+.-+++.||+|+|||...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 4556777999999999999754
No 204
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.63 E-value=0.44 Score=44.43 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=31.6
Q ss_pred CCCCcCCCCCHHHHHHHHhCC---CCCCChhhhhcccccccCCceEEEccCCCcchhHHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSG---FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
...|+++.-...+.+.|...- ...+..++. .....+.+++.||+|+|||..+-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHHHH
Confidence 456888876677767666431 111111111 11234679999999999997653
No 205
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.36 E-value=0.72 Score=43.77 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHhCCCCCCChhhhhcccc-cccCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 58 LRAIVDSGFEHPSEVQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 58 ~~~l~~~~~~~~~~~Q~~~i~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
...|.+.|. +.+.+...+.. +..+..+++.||||||||... -.++..+
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 344555553 23333333332 345778999999999999753 3344444
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.22 E-value=0.56 Score=41.32 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997654
No 207
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.11 E-value=0.48 Score=38.45 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=16.1
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.++-+++.||||+|||..++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35669999999999996543
No 208
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=84.95 E-value=4.5 Score=28.34 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=42.3
Q ss_pred EEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHhhhcCCcc
Q 014486 291 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 340 (423)
Q Consensus 291 ~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 340 (423)
.+||.+..+-...+...+++.|..++.++++.....|.+-+..|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 47888888888999999999999999999999988888888888754433
No 209
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.93 E-value=0.44 Score=37.99 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.1
Q ss_pred ccCCceEEEccCCCcchhHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~ 101 (423)
..+..+++.|++|+|||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 345679999999999998653
No 210
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.86 E-value=0.62 Score=38.33 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=25.0
Q ss_pred CChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 69 PSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 69 ~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
-+.-|..++..+..|.-+.+.||.|+|||+..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456677777777888999999999999753
No 211
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.78 E-value=11 Score=33.18 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=36.2
Q ss_pred ccEEEEcCcchhhccCCcHHHHHHHHHhCCCCceEEEEeccCCccHHHHHHHhc
Q 014486 191 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244 (423)
Q Consensus 191 ~~~vVvDE~h~~~~~~~~~~~~~~~~~~~~~~~~~v~~SAT~~~~~~~~~~~~~ 244 (423)
.+++++|.+-...........+..+.+.+.++..++.+.++...+....++.+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 457889988765433455566666666666777788888887766666555543
No 212
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.47 E-value=0.37 Score=40.71 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
|.-+++.|++|+|||..++-.+.+.....+. .+++++-. .-..++.+++.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS-SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeeccc-CCHHHHHHHHH
Confidence 4558999999999997655444433322221 55666533 23444444443
No 213
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.45 E-value=2.6 Score=36.84 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=54.3
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+... ++.+..++|+.....+. ..+.++..+|+|+|.- -...+++.+++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~~Gidi~~v~ 98 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AARGLDIPQVD 98 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TTCSTTCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hhcCcccccee
Confidence 8899999999888887776553 67899999987665544 3455677899999942 23467788888
Q ss_pred EEEEcCc
Q 014486 193 HFILDEC 199 (423)
Q Consensus 193 ~vVvDE~ 199 (423)
+||.=+.
T Consensus 99 ~VI~~d~ 105 (300)
T 3i32_A 99 LVVHYRM 105 (300)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 8885444
No 214
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.40 E-value=4.2 Score=34.03 Aligned_cols=115 Identities=12% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCcEEEEEcChhhHHHHHHHHHh----CCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC-----ccc-cCCCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVG-RGIDIERV 357 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~-----~~~-~Gld~~~~ 357 (423)
+.++||.++++..+.++.+.++. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777655 48889999999987776655443 478999995 222 24567788
Q ss_pred CEEEEccCC----CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 358 NIVINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 358 ~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
+++|.-..- ++....+..+-+..+ +..-+++++........+.+.+++.
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i~~~~~---~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKIVDQIR---PDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHHHTTSC---SSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred cEEEEeCHHHHhhhCcHHHHHHHHHhCC---ccceEEEEEeecCHHHHHHHHHHCC
Confidence 887753221 112222222211111 2234555555556666666666654
No 215
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.31 E-value=0.86 Score=41.13 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.4
Q ss_pred ccCCceEEEccCCCcchhH
Q 014486 81 ILGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~ 99 (423)
..|..+++.||||||||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=83.97 E-value=0.63 Score=37.17 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=15.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999754
No 217
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=84.32 E-value=0.21 Score=39.61 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred eEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCc
Q 014486 115 VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNV 191 (423)
Q Consensus 115 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 191 (423)
.++||.|+++..+..+++.++.. ++.+..++|+.+..... ..+.++..+|+|+|. .+ ...+++.++
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~~ 99 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-----ARGIDIPDV 99 (170)
Confidence 38899999999988888777654 56778888876544333 344556678999993 22 224556666
Q ss_pred cEEEEcC
Q 014486 192 RHFILDE 198 (423)
Q Consensus 192 ~~vVvDE 198 (423)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7766533
No 218
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.83 E-value=0.5 Score=37.52 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.0
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+++.|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999864
No 219
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.76 E-value=1.4 Score=46.72 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=41.9
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCC---------CCCeEEEEEecChHHHHHHHHHHHHHh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQVTALVLCHTRELAYQICHEFERFS 138 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~~ 138 (423)
...+|.|..|||||.+...-++..+... -....+|+|+=|++-|.++.+++.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3459999999999988766666665432 123479999999999999998887653
No 220
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.59 E-value=9.8 Score=34.20 Aligned_cols=74 Identities=8% Similarity=0.086 Sum_probs=56.1
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.++++.-+..+++.+.+. ++.+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 252 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~~~ 320 (391)
T 1xti_A 252 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVN 320 (391)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC------CSSCBCCTTEE
T ss_pred cEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh------hhcCCCcccCC
Confidence 8999999999999988888764 67888999987655443 4456677899999942 23467788899
Q ss_pred EEEEcCcc
Q 014486 193 HFILDECD 200 (423)
Q Consensus 193 ~vVvDE~h 200 (423)
+||.-+.-
T Consensus 321 ~Vi~~~~p 328 (391)
T 1xti_A 321 IAFNYDMP 328 (391)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 98875543
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.59 E-value=0.55 Score=41.67 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.6
Q ss_pred CceEEEccCCCcchhHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~ 102 (423)
+-++|.||||+|||.....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999986543
No 222
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.58 E-value=3.1 Score=33.62 Aligned_cols=118 Identities=9% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-----ccc-CCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGR-GIDIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-----~~~-Gld~~~ 356 (423)
..++||.++++..+..+.+.+... +..+..++|+.+....... . .+..+|+|+|.- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 357999999999999888877653 5678888998876554332 2 346789999952 222 346667
Q ss_pred CCEEEEccCCC-CcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 357 VNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 357 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|.-..-. .-..+...+.+..+.-....-+++++........+.+++++.
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 88777522110 000121111111111111233455555555666666666654
No 223
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.47 E-value=0.49 Score=37.81 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
...+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999764
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.35 E-value=0.96 Score=40.23 Aligned_cols=18 Identities=39% Similarity=0.614 Sum_probs=15.8
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.|..+.+.||||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999973
No 225
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.27 E-value=0.51 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=15.8
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
.+.+++.|++|||||.+.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3568999999999998654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.14 E-value=1.1 Score=41.35 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHHH
Q 014486 84 MDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~ 102 (423)
..+++.|++|+|||..+.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976544
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.13 E-value=1.7 Score=43.57 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=36.9
Q ss_pred ccccCCCCcCCCCCHHHHHHHHhC-CC--CCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 41 VGIHSSGFRDFLLKPELLRAIVDS-GF--EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~~l~~~-~~--~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.......|++.+.-+.+.+.|.+. .+ ..|..++... +...+.+++.||+|+|||+.+
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 344556799998888888888775 22 2222222211 123467999999999999754
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.03 E-value=0.7 Score=37.60 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.5
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.++.+++.|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 35679999999999998653
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.92 E-value=0.66 Score=39.71 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=16.9
Q ss_pred cccCCceEEEccCCCcchhHH
Q 014486 80 AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 445667999999999999753
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.88 E-value=0.23 Score=42.94 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=26.5
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhhh-hcccc--cccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQH-ECIPQ--AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~i~~--~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...+|++.+-.+.+.+.|...= ..|+.. .++.. +.-.+.+++.||+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456888876667766665420 112211 11211 112344999999999999753
No 231
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.85 E-value=1.3 Score=39.17 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=30.8
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 136 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 136 (423)
.|.-++|.|++|+|||..++..+......+ ..+++++-- .-..|+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 355699999999999976554444443332 267777643 334444444443
No 232
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=82.80 E-value=0.48 Score=42.56 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=19.8
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566677877 788899999999864
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.74 E-value=2.8 Score=33.90 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC--CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-----cc-cCCCCCCCCE
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VG-RGIDIERVNI 359 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-----~~-~Gld~~~~~~ 359 (423)
..++||.++++..+..+.+.++.. +..+..++|+.+.......+. ...+|+|+|.- +. ..+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 467999999999999999988875 467788888877555443332 25689999951 11 2456777887
Q ss_pred EEE
Q 014486 360 VIN 362 (423)
Q Consensus 360 vi~ 362 (423)
+|.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 234
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.68 E-value=0.65 Score=41.52 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.7
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5677788877 678899999999875
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.58 E-value=0.52 Score=37.18 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.57 E-value=21 Score=32.75 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=15.7
Q ss_pred cCCceEEEccCCCcchhHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~ 102 (423)
.+.-+.+.++.|+|||.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 344577889999999986544
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.57 E-value=0.52 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.2
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
..|.-+++.||+|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34566899999999999753
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=82.52 E-value=4.8 Score=36.62 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=55.3
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+.+. +..+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~~ 336 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGIDVEQVS 336 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCCCTTEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCCccCCC
Confidence 8999999999999998888765 66888999987765544 4455677899999952 24567888899
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888533
No 239
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=82.41 E-value=0.66 Score=41.54 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=20.9
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5677888887 677899999999875
No 240
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=82.40 E-value=5 Score=37.08 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=55.1
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+.+. ++.+..++|+....+.. ..+.++..+|+|+|.- -...+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------ASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hhCCCCcccCC
Confidence 4899999999999988887764 67899999987765544 4456677899999962 24567888899
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-+
T Consensus 371 ~VI~~d 376 (434)
T 2db3_A 371 HVINYD 376 (434)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888633
No 241
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.36 E-value=0.65 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=14.7
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
-++|.||||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 478999999999976543
No 242
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.16 E-value=0.74 Score=41.49 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=29.8
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhh-hcccc-cccCCceEEEccCCCcchhHHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQH-ECIPQ-AILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~i~~-~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
...|+++.-.+.+.+.|.+.=. .+... ..+.. ....+.+++.||+|+|||..+-
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 3457777666666666654310 01100 00011 1234679999999999997653
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.11 E-value=1.5 Score=39.54 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=16.1
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 244
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.99 E-value=1.2 Score=40.67 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=27.4
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 125 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 125 (423)
..+.+++|.|+||+|||...-..+.... ..+ .+++++=|..+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~--~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREY-MQG--SRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHH-TTT--CCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHH-HCC--CEEEEEeCCcC
Confidence 3567899999999999976543333333 222 26677777655
No 245
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.87 E-value=0.71 Score=40.39 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.7
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378999999999976543
No 246
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=81.85 E-value=4.8 Score=36.65 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=54.9
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.|+++.-+..+++.+.+. ++.+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v~ 346 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLDVPQVS 346 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCCCTTEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCCcccCC
Confidence 8999999999999888888764 67888999987755443 4455677899999952 24567888888
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888643
No 247
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=81.66 E-value=19 Score=33.88 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=52.4
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
..++++.+..-+..+++.+.+. +.++..++|+....... ..+.++..+|+|+|++.+.. .+++.+++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 4555565566665555555442 34888999988655443 44556778999999887764 66888899
Q ss_pred EEEEcCcc
Q 014486 193 HFILDECD 200 (423)
Q Consensus 193 ~vVvDE~h 200 (423)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998877
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=81.55 E-value=0.63 Score=37.89 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.++-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566899999999999754
No 249
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.53 E-value=2.2 Score=49.39 Aligned_cols=69 Identities=14% Similarity=0.046 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCCCChhhhhcc----cccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecCh
Q 014486 55 PELLRAIVDSGFEHPSEVQHECI----PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 124 (423)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~Q~~~i----~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 124 (423)
..+.+.+.+.|+ ++.+.+..=+ ..+...+.+++.||||+|||.++-...-..-...+......++-|-.
T Consensus 875 ~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKa 947 (3245)
T 3vkg_A 875 KKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTT
T ss_pred HHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCC
Confidence 455666777777 5666664332 22334677999999999999886432222111112233455566653
No 250
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.50 E-value=0.62 Score=37.04 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.7
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
..++++.||+|+|||..+-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 251
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.40 E-value=0.81 Score=38.02 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=17.4
Q ss_pred cccCCceEEEccCCCcchhHHHH
Q 014486 80 AILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
+..|.-+++.||+|+|||.....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHH
Confidence 33466789999999999975433
No 252
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=81.33 E-value=0.59 Score=41.36 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.2
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455667777 788899999999864
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.32 E-value=1.8 Score=36.19 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=19.0
Q ss_pred ccCCceEEEccCCCcchhHHHHHHh
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
..|.-+.+.||+|+|||......+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3456789999999999986655444
No 254
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=81.28 E-value=5.7 Score=36.00 Aligned_cols=72 Identities=7% Similarity=0.117 Sum_probs=54.7
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.++++.-+..+++.+.+. ++.+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gidip~~~ 328 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------LTRGIDIQAVN 328 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------SSSSCCCTTEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc------cccCCCccCCC
Confidence 8999999999999998888775 66888899987765443 4455677899999941 23467788888
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-+
T Consensus 329 ~Vi~~~ 334 (400)
T 1s2m_A 329 VVINFD 334 (400)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888643
No 255
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.22 E-value=1.6 Score=41.22 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=16.6
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+.+++|.|+||||||...
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHH
T ss_pred ccCceEEEECCCCCCHHHHH
Confidence 34578999999999999764
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=81.17 E-value=0.72 Score=36.96 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999865
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.14 E-value=0.89 Score=37.28 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
|.-+++.||+|+|||...
T Consensus 8 g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 556889999999999764
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.06 E-value=1.1 Score=36.94 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=23.4
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
..|.-+++.||+|+|||..+...+. . .+ .+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~--~~-~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---L--SG-KKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---H--HC-SEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---H--cC-CcEEEEEC
Confidence 3456689999999999976544333 1 11 26666653
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.02 E-value=0.78 Score=39.03 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=13.7
Q ss_pred eEEEccCCCcchhHHH
Q 014486 86 VICQAKSGMGKTAVFV 101 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~ 101 (423)
+++.||+|||||..+-
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999997653
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.01 E-value=0.73 Score=37.58 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.3
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
..|.-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34666899999999999754
No 261
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=80.95 E-value=0.73 Score=41.73 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.0
Q ss_pred cccccCCc--eEEEccCCCcchhHH
Q 014486 78 PQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 78 ~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
..++.|.+ ++..|.||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44566777 678899999999864
No 262
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.95 E-value=0.68 Score=49.06 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 135 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 135 (423)
-+|.|..|||||.+.+--+...+.....+.++|++||.. ..-++.+++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~ 52 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELA 52 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHH
Confidence 378899999999987766655544444445889999975 4444444443
No 263
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.94 E-value=0.86 Score=41.62 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
.+++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 264
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.92 E-value=0.3 Score=38.79 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=40.3
Q ss_pred hhhhhcccccccCC--ceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHH
Q 014486 71 EVQHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 129 (423)
Q Consensus 71 ~~Q~~~i~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 129 (423)
+-|..++..++... -.++.++-|++|+...+..++......+. .+.+++|+..-...
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr--~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGR--EVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC--CEEEECSTTHHHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCe--EEEEEcCchHHHHH
Confidence 45788888877644 37889999999998855554444444333 78999999765444
No 265
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=80.86 E-value=0.64 Score=42.43 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=18.6
Q ss_pred ccccccCCc--eEEEccCCCcchhHH
Q 014486 77 IPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
+..++.|.+ ++..|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 445566776 778899999999874
No 266
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.76 E-value=4.7 Score=33.24 Aligned_cols=72 Identities=13% Similarity=0.257 Sum_probs=47.9
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC---CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc------cccCCCCCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL------VGRGIDIERV 357 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~------~~~Gld~~~~ 357 (423)
.+.++||.++++..+..+.+.++.. +..+..++|+.+...+...+. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3467999999999999998888774 678888888877555443332 34789999941 1235667788
Q ss_pred CEEEE
Q 014486 358 NIVIN 362 (423)
Q Consensus 358 ~~vi~ 362 (423)
+++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87775
No 267
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.61 E-value=5.3 Score=37.65 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.6
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
.+++.+++|+|||..+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478889999999986543
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.59 E-value=0.78 Score=36.15 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.|++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999754
No 269
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.56 E-value=6.3 Score=35.06 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=53.8
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.++++.-+..+++.+++. +..+..++|+.+..... +.+.++..+|+|+|.- +. ..+++.+++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~-----~Gid~~~~~ 308 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-MS-----RGIDVNDLN 308 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-HH-----HHCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-hh-----cCCCcccCC
Confidence 7899999999999988888764 67888999987655443 3455677899999942 22 245677788
Q ss_pred EEEEcCc
Q 014486 193 HFILDEC 199 (423)
Q Consensus 193 ~vVvDE~ 199 (423)
+||.-..
T Consensus 309 ~Vi~~~~ 315 (367)
T 1hv8_A 309 CVINYHL 315 (367)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8876443
No 270
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=80.30 E-value=0.71 Score=41.37 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=18.7
Q ss_pred ccccccCCc--eEEEccCCCcchhHH
Q 014486 77 IPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
+..++.|.+ ++..|.||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445667777 778899999999864
No 271
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.28 E-value=0.59 Score=41.70 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=18.3
Q ss_pred ccccccCCc--eEEEccCCCcchhHH
Q 014486 77 IPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
+..++.|.+ ++..|.||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344556776 678899999999864
No 272
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=80.20 E-value=12 Score=31.32 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=67.8
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c-----ccCCCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 357 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~-----~~Gld~~~~ 357 (423)
..++||.++++..+..+.+.++.. +..+..++|+.+.......+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888877653 56778888887755543332 246789999952 1 123567778
Q ss_pred CEEEEccCC----CCc-chhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 358 NIVINYDMP----DSA-DTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 358 ~~vi~~~~~----~s~-~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
+++|.-..- ++. ..+.....+.........-+++++........+.+.+.+.
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~ 232 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLY 232 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcC
Confidence 877742211 111 1222223332222212334445555555555555555553
No 273
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=80.20 E-value=0.72 Score=41.37 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=19.0
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445567777 788899999999864
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=80.17 E-value=0.76 Score=36.85 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+++.|++|||||.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445899999999999864
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.11 E-value=0.71 Score=36.27 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.1
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 276
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.02 E-value=0.69 Score=42.30 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=20.5
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667778877 678899999999875
No 277
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.98 E-value=0.69 Score=41.70 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=19.0
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445667777 678899999999864
No 278
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.98 E-value=0.69 Score=41.34 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.5
Q ss_pred ccccccCCc--eEEEccCCCcchhHH
Q 014486 77 IPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
+..++.|.+ ++..|.||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345566776 778899999999864
No 279
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.97 E-value=1.1 Score=40.31 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=25.4
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 126 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 126 (423)
|.-++|.||+|+|||...+..+...... +. +++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-gg--~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-GG--VAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-TC--CEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CC--eEEEEeccccc
Confidence 4458999999999997654433332222 21 67777654433
No 280
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.93 E-value=0.7 Score=40.98 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.4
Q ss_pred hcccccccCCc--eEEEccCCCcchhHH
Q 014486 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 75 ~~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
..+..++.|.+ ++..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566778877 678899999999864
No 281
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.92 E-value=0.62 Score=37.28 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+..+++.|++|||||...-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4458999999999998653
No 282
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=79.79 E-value=0.71 Score=41.30 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.2
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455667776 778899999999864
No 283
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.74 E-value=0.71 Score=41.54 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=18.9
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445567777 678899999999863
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=79.62 E-value=0.6 Score=44.11 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=19.4
Q ss_pred cccccccCCceEEEccCCCcchhHH
Q 014486 76 CIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+...+..+.++++.||+|+|||..+
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHhcCCeeEeecCchHHHHHHH
Confidence 3344456789999999999999754
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.61 E-value=1.1 Score=36.42 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=15.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566889999999999754
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.58 E-value=0.76 Score=36.45 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=13.8
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999865
No 287
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=79.58 E-value=0.71 Score=41.50 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=19.4
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455667877 678899999999864
No 288
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.54 E-value=0.87 Score=39.73 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=14.9
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
...+++.||+|+|||..+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999754
No 289
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.52 E-value=0.85 Score=39.00 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3567999999999999754
No 290
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.50 E-value=0.77 Score=39.08 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCcCCCCCHHHHHHHHhC--CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...|+++.-.+.+.+.+... .+..+..++... ....+.+++.||+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 34577776666666655532 011111111111 112356999999999999754
No 291
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=79.49 E-value=0.73 Score=41.34 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=19.4
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556677877 677899999999863
No 292
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=79.45 E-value=0.73 Score=41.31 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=19.6
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556677877 678899999999864
No 293
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.36 E-value=0.74 Score=41.12 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.0
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667777 678899999999864
No 294
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.34 E-value=0.8 Score=41.35 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.1
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999865
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.33 E-value=1.2 Score=36.18 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5667899999999999754
No 296
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.31 E-value=2.1 Score=38.26 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=25.8
Q ss_pred CceEEEccCCCcchhHHHHHHhhccCCC---CCCeEEEEEecCh
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 124 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 124 (423)
.-+++.||+|+|||...+..+.....+. +.+.+++++....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4489999999999986655444433321 1223778876543
No 297
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=79.26 E-value=1.3 Score=39.69 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.6
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.|.-+++.||+|+|||...+..+......+. +++++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC
Confidence 3456899999999999876554444333222 66777643
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.25 E-value=2.8 Score=36.02 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.0
Q ss_pred ccccccCCceEEEccCCCcchhHHHHHH
Q 014486 77 IPQAILGMDVICQAKSGMGKTAVFVLST 104 (423)
Q Consensus 77 i~~~~~~~~~ii~~~tGsGKT~~~~~~~ 104 (423)
+..+..|.-++|.||+|+|||......+
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3445567789999999999997654433
No 299
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=79.22 E-value=0.75 Score=41.43 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.1
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455667777 778899999999764
No 300
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=79.21 E-value=0.72 Score=41.55 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=19.9
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566777877 677899999999864
No 301
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=78.98 E-value=0.9 Score=41.02 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.1
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5567778877 678899999999864
No 302
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.79 E-value=1 Score=39.75 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.0
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
.++|.||||+|||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999986543
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.57 E-value=0.71 Score=39.23 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=28.9
Q ss_pred CCCCcCCCCCHHHHHHHHhCCCCCCChhhhhccccc--ccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA--ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+|+++.-.+.....+.+.-.. .. ....+..+ .-.+.+++.||+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34677777666665555543110 00 01122111 11344999999999999754
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.54 E-value=0.95 Score=36.32 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.9
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 305
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=78.52 E-value=0.8 Score=41.48 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=19.1
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3445667777 778899999999874
No 306
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=78.49 E-value=8.5 Score=32.62 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=51.7
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC-----cc--ccCCCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LV--GRGIDIE 355 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~-----~~--~~Gld~~ 355 (423)
.+.++||.++++..+..+.+.++.. +..+..+.|+.........+. . ..+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---N-GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---C-CCCEEEEcHHHHHHHHHccCCcccc
Confidence 3567999999999999988887763 567778888887666544432 2 378999993 11 1246777
Q ss_pred CCCEEEE
Q 014486 356 RVNIVIN 362 (423)
Q Consensus 356 ~~~~vi~ 362 (423)
+++++|.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.49 E-value=0.87 Score=36.00 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=15.5
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.|.-+.+.||+|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 308
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=78.47 E-value=0.9 Score=39.76 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
.+++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 309
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=78.43 E-value=2.3 Score=36.31 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCCCCChhhh-hcccccccCC-----ceEEEccCCCcchhHHH
Q 014486 56 ELLRAIVDSGFEHPSEVQH-ECIPQAILGM-----DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 56 ~~~~~l~~~~~~~~~~~Q~-~~i~~~~~~~-----~~ii~~~tGsGKT~~~~ 101 (423)
.+.+-|.-+|+. +.+- .++..++.++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566777777765 5553 2244444432 38999999999998654
No 310
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=78.34 E-value=0.88 Score=37.18 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.0
Q ss_pred ccccccCCceEEEccCCCcchhHH
Q 014486 77 IPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
++.+..+.-+.+.|++|||||..+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 344445566889999999999754
No 311
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=78.21 E-value=0.95 Score=36.93 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=14.5
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
+.+++.||+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999764
No 312
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.16 E-value=4.4 Score=33.57 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=51.2
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c-----ccCCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~-----~~Gld~~~ 356 (423)
..++||.++++..+.++.+.++.. ++.+..++|+.+...+...+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 468999999999999998888764 67788899998876655443 25789999952 1 13456667
Q ss_pred CCEEEE
Q 014486 357 VNIVIN 362 (423)
Q Consensus 357 ~~~vi~ 362 (423)
++++|.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777664
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.99 E-value=1 Score=36.53 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.2
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.+.-+++.|+.|||||.+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568999999999998653
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=77.92 E-value=1 Score=37.33 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=16.1
Q ss_pred ccccCCceEEEccCCCcchhHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
++-.|.-+++.||.|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3445677899999999999753
No 315
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.89 E-value=3.1 Score=38.51 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=41.9
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEech
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTP 174 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~ 174 (423)
+++|++|++.-+..+++.+++. +.++..++|+. .......+.++..+|+|+|.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 7999999999999998888765 67888898863 33344556677789999995
No 316
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.88 E-value=1.5 Score=39.33 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=26.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
.+.-+++.|++|+|||..++..+......+. +++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCC
Confidence 3456899999999999876554444333222 67777653
No 317
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.87 E-value=0.54 Score=41.84 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.3
Q ss_pred cccCCceEEEccCCCcchhHH
Q 014486 80 AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..++++++.||+|+|||..+
T Consensus 43 l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHH
Confidence 344788999999999999754
No 318
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.80 E-value=0.84 Score=41.81 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.5
Q ss_pred hcccccccCCc--eEEEccCCCcchhHH
Q 014486 75 ECIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 75 ~~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
..+..++.|.+ ++..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35666778877 678899999999864
No 319
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.67 E-value=0.78 Score=41.42 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=18.5
Q ss_pred ccccccCCc--eEEEccCCCcchhHH
Q 014486 77 IPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 77 i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
+..++.|.+ ++..|.||||||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 345566777 788899999999864
No 320
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.53 E-value=1.2 Score=39.68 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-++|+||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998654
No 321
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=77.50 E-value=2.3 Score=39.54 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.8
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
+++|+||++.-+..+++.+++. ++++..++|. ........+.++..+|+|+|.- -...+++. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v------~e~GiDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI------AEMGANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS-SCC--------CCCSEEEESSS------TTCCTTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh------hheeeccC-ceEEE
Confidence 8999999999999998888764 6788888884 3334455667777899999952 13456777 78776
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=77.09 E-value=1.1 Score=35.95 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.7
Q ss_pred CceEEEccCCCcchhH
Q 014486 84 MDVICQAKSGMGKTAV 99 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~ 99 (423)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999975
No 323
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.08 E-value=1.1 Score=36.37 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+++.||.|||||...
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 556899999999999754
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.03 E-value=1.2 Score=40.32 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.1
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
..+..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34666899999999999753
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=77.00 E-value=1 Score=35.63 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.0
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999764
No 326
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=77.00 E-value=1.1 Score=38.77 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=30.7
Q ss_pred cCCCCcCCCCCHHHHHHHHhCCCCCCChhh-hhccccc--ccCCceEEEccCCCcchhHH
Q 014486 44 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQ-HECIPQA--ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 44 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~i~~~--~~~~~~ii~~~tGsGKT~~~ 100 (423)
....|+++.-.+.+.+.+.+.-. .+. ...+..+ .-.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~----~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE----FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH----HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH----HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 44568888777777666654311 010 1111111 11234999999999999754
No 327
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.92 E-value=0.95 Score=41.89 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=19.1
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 3445567777 778899999999864
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.91 E-value=1.1 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=15.3
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
+++++.|+.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998654
No 329
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.86 E-value=1 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.3
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+.-+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458999999999998653
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.83 E-value=1.2 Score=40.01 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.9
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.+..+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344689999999999975
No 331
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.75 E-value=2.6 Score=40.30 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCC-CCCCeEEEEEecC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHT 123 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~ 123 (423)
..+++|.|.||||||...-..++..+.. .+...+.+++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 3579999999999997644333333322 2333344444343
No 332
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.50 E-value=1.8 Score=49.38 Aligned_cols=46 Identities=30% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCCCChhhhhcc----cccccCCceEEEccCCCcchhHHH
Q 014486 55 PELLRAIVDSGFEHPSEVQHECI----PQAILGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~Q~~~i----~~~~~~~~~ii~~~tGsGKT~~~~ 101 (423)
..+.+.+.+.++ .+.+.+..-+ ..+...+.+++.||||+|||.++-
T Consensus 892 ~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445566666666 4566553322 223346779999999999998754
No 333
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=76.41 E-value=1.2 Score=36.80 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.8
Q ss_pred ccCCceEEEccCCCcchhHH
Q 014486 81 ILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~ 100 (423)
..|.-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999753
No 334
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.39 E-value=13 Score=30.86 Aligned_cols=117 Identities=12% Similarity=0.231 Sum_probs=61.5
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC-----cccc-CCCCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVGR-GIDIER 356 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~-----~~~~-Gld~~~ 356 (423)
...++||.++++..+..+.+.++.. +..+..++|+.+.... ......+..+|+|+|. .+.. .+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999988888764 5667777777654332 2334556689999993 2223 356677
Q ss_pred CCEEEEccCC----CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 357 VNIVINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 357 ~~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|.-..- ++....+..+-+. . ....-+++++........+.+.+++.
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~--~-~~~~~~i~~SAT~~~~~~~~~~~~l~ 227 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQK--L-NTSIQVVLLSATMPTDVLEVTKKFMR 227 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHH--S-CTTCEEEEECSSCCHHHHHHHHHHCS
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHh--C-CCCCeEEEEEEecCHHHHHHHHHHCC
Confidence 8877753211 1111111111111 1 12234455555555666666666554
No 335
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.30 E-value=2 Score=39.87 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=25.6
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEec
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 122 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 122 (423)
.|.-++|.|++|+|||..++-.+...... +.++++++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 34559999999999997665545444433 226777763
No 336
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.29 E-value=1.5 Score=35.68 Aligned_cols=22 Identities=23% Similarity=0.284 Sum_probs=16.6
Q ss_pred eEEEccCCCcchhHHHHHHhhc
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
.++.|++|||||+.+...+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999998765444443
No 337
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=76.14 E-value=2.2 Score=35.78 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=18.5
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.|.-+.+.||.|||||+. +-++.-+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL--l~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM--LNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhcCC
Confidence 466689999999999963 44444433
No 338
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.06 E-value=1.2 Score=35.78 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.1
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.+..+++.|++|||||.+.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568999999999998653
No 339
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.90 E-value=1.3 Score=40.23 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=14.5
Q ss_pred ceEEEccCCCcchhHHHH
Q 014486 85 DVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~ 102 (423)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 378999999999976543
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=75.77 E-value=1.1 Score=36.37 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.6
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.-+++.|++|||||..+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999864
No 341
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=75.56 E-value=1.3 Score=36.21 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=16.3
Q ss_pred ccccCCceEEEccCCCcchhHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..|.-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4566777899999999999753
No 342
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.55 E-value=1.2 Score=38.99 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
...++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3567999999999999764
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.54 E-value=2.1 Score=37.18 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=17.7
Q ss_pred cccCCceEEEccCCCcchhHHHH
Q 014486 80 AILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
+..|.-+++.||+|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34466789999999999976543
No 344
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.51 E-value=1.4 Score=36.76 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=12.9
Q ss_pred cccCCceEEEccCCCcchhHH
Q 014486 80 AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..|.-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345667899999999999764
No 345
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.45 E-value=1.2 Score=40.39 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999765
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.43 E-value=1.2 Score=38.77 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.8
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.-+++.||+|||||..+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 448999999999997643
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=75.32 E-value=1.4 Score=35.78 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.9
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
..+++.|++|||||.++-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998653
No 348
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.32 E-value=3.9 Score=38.02 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=51.9
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEc--------CcchHHH---HHHHhcCCCcEEEechHHHHHHHhcC
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG--------GVNIKIH---KDLLKNECPQIVVGTPGRILALARDK 184 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~ilv~T~~~l~~~~~~~ 184 (423)
++||.++++.-+..+++.+... ++++..++| +.+.... .+.+.++..+|+|+|. .+ ..
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~-----~~ 431 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG-----EE 431 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-----GG
T ss_pred eEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-----cc
Confidence 8999999999988888877764 678888888 4433322 3455567789999993 22 33
Q ss_pred CCCCCCccEEEEcCcc
Q 014486 185 DLSLKNVRHFILDECD 200 (423)
Q Consensus 185 ~~~~~~~~~vVvDE~h 200 (423)
.+++..+++||+-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 5677788888865544
No 349
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.09 E-value=3.9 Score=33.58 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=44.1
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCcc------ccCCCCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV------GRGIDIERV 357 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~------~~Gld~~~~ 357 (423)
..++||.++++..+..+.+.++.. +..+..++|+.+....... +. ..+|+|+|.-. ...+++.++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999998888877653 6778888888765544332 22 37899999521 235666777
Q ss_pred CEEEE
Q 014486 358 NIVIN 362 (423)
Q Consensus 358 ~~vi~ 362 (423)
+++|.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87774
No 350
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.88 E-value=16 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=15.7
Q ss_pred ceEEEccCCCcchhHHHHHHh
Q 014486 85 DVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~ 105 (423)
.+++.++.|+|||.+..-.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477789999999987654333
No 351
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=74.83 E-value=1.3 Score=34.93 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.5
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999998653
No 352
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.71 E-value=2.1 Score=38.61 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=24.6
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecC
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 123 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 123 (423)
+.-++|.+++|+|||..++-.+......+. +++|+..-
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECC
Confidence 455899999999999766544443332221 56777644
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=74.57 E-value=1.7 Score=35.88 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCceEEEccCCCcchhHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~ 102 (423)
.+-+++.||+||||++++-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45578899999999986543
No 354
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=74.50 E-value=1.3 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.6
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+++.||+|+|||...
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4688999999999754
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.49 E-value=1.2 Score=35.75 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.8
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
.-+++.|++|||||..+-
T Consensus 4 ~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999998653
No 356
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.46 E-value=0.74 Score=39.42 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999765
No 357
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.41 E-value=1.3 Score=36.03 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.4
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+.-+.+.||+|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999764
No 358
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=74.40 E-value=1.3 Score=36.20 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+.-+++.|+.|||||...-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4458899999999998653
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.29 E-value=1.3 Score=35.50 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.7
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+++.|++|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999865
No 360
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.11 E-value=1.6 Score=40.71 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=16.5
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.++++++.||+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34679999999999997653
No 361
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=74.04 E-value=2.3 Score=33.88 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=24.5
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
++|.|++|||||.-+.-.+ .. + . .++++......-..+.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la-~~----~-~-~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-GD----A-P-QVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-CS----C-S-SEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH-hc----C-C-CeEEEecCCCCCHHHHHHHHHH
Confidence 5899999999996543322 22 1 2 4688877554444455555544
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.00 E-value=1.3 Score=36.36 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 363
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.45 E-value=3.6 Score=35.15 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=18.5
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.|.-+.+.||.|+|||.. +-++.-+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL--l~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL--LRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHH--HHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhcCC
Confidence 466688999999999974 34444433
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.09 E-value=1.7 Score=35.42 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.4
Q ss_pred cCCceEEEccCCCcchhHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~ 101 (423)
.+.-+++.|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45668999999999998653
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.94 E-value=1.4 Score=36.12 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 366
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.75 E-value=1.5 Score=33.64 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=13.2
Q ss_pred ceEEEccCCCcchhH
Q 014486 85 DVICQAKSGMGKTAV 99 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~ 99 (423)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 367
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.75 E-value=3 Score=29.83 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 468999999999999999999999998888988743
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=72.70 E-value=1.7 Score=35.90 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+..+++.|++|||||.+.-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998653
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=72.63 E-value=1.5 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.7
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
..+++.|++|||||.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999865
No 370
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=72.60 E-value=2.1 Score=35.96 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=17.7
Q ss_pred cccCCceEEEccCCCcchhHHHH
Q 014486 80 AILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
+-.|.-+.+.||+|+|||...-.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH
Confidence 34566799999999999975443
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.58 E-value=2.4 Score=42.80 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=32.9
Q ss_pred cccCCCCcCCCCCHHHHHHHHhCC-C--CCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 42 GIHSSGFRDFLLKPELLRAIVDSG-F--EHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~l~~~~-~--~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
......|++..-.+.+.+.|...- + ..+..+.. ..+..++.+++.||+|+|||..+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK---FGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC---CCCCCCCCCCCBCCTTSSHHHHH
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHh---cCCCCCceeEEECCCCCCHHHHH
Confidence 334456777766666667776541 1 11111111 12234677999999999999754
No 372
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.58 E-value=1.4 Score=38.52 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.0
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999997653
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.53 E-value=1.5 Score=34.36 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.+.-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.44 E-value=1.5 Score=35.33 Aligned_cols=18 Identities=17% Similarity=0.112 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+++.|++|||||.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456899999999999865
No 375
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.37 E-value=1.5 Score=35.04 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+++.|++|||||.+.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=72.32 E-value=1.6 Score=34.82 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998653
No 377
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=72.19 E-value=3 Score=35.19 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=18.3
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL--TKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466789999999999974 3344443
No 378
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.15 E-value=2 Score=35.12 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.1
Q ss_pred eEEEccCCCcchhHHHH
Q 014486 86 VICQAKSGMGKTAVFVL 102 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~ 102 (423)
+++.||+||||++.+-.
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999986543
No 379
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.96 E-value=7.5 Score=32.17 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=48.8
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c----cc--CCCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GR--GIDIE 355 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~----~~--Gld~~ 355 (423)
.+.++||.++++..+..+.+.++.. ++.+..++|+.+.......+ +..+|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3567999999999999988888764 47788889887655443332 35789999942 1 12 36667
Q ss_pred CCCEEEE
Q 014486 356 RVNIVIN 362 (423)
Q Consensus 356 ~~~~vi~ 362 (423)
+++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777775
No 380
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.82 E-value=3 Score=35.10 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=18.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 27 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI--FSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466689999999999974 3344433
No 381
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=71.79 E-value=3.1 Score=35.78 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=18.1
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|||||+. +-++.-+
T Consensus 33 ~Ge~~~iiGpnGsGKSTL--l~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL--FQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHcC
Confidence 466689999999999974 3444443
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.78 E-value=1.6 Score=36.10 Aligned_cols=18 Identities=17% Similarity=0.243 Sum_probs=15.1
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
..+++.|++|||||.+.-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999998653
No 383
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=71.74 E-value=1.3 Score=39.65 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
..++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 346999999999999764
No 384
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.52 E-value=1.6 Score=35.47 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=13.5
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+.+.|+.|||||.+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999865
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=71.49 E-value=2.3 Score=36.04 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..+++.|++|+|||.+.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999864
No 386
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.47 E-value=3.2 Score=34.39 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=17.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 29 ~Ge~~~iiG~nGsGKSTL--l~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL--LYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466688999999999963 3444443
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=71.39 E-value=3.4 Score=33.98 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.3
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.|.-+.+.||.|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 388
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=71.28 E-value=1.7 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+.|.||+|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455789999999999743
No 389
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=71.28 E-value=10 Score=38.11 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=54.7
Q ss_pred EEEEEecChHHHHHHHHHHHHHhc------cCCCceEEEEEcCcchHHHHHHHh--------cCCCcEEEechHHHHHHH
Q 014486 116 TALVLCHTRELAYQICHEFERFST------YLPDIKVAVFYGGVNIKIHKDLLK--------NECPQIVVGTPGRILALA 181 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ilv~T~~~l~~~~ 181 (423)
++||.+|++.-+..+++.+.+... ...++.+..++|+.....+...+. ++...|+|+|.-.
T Consensus 305 ~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia----- 379 (773)
T 2xau_A 305 DILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA----- 379 (773)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH-----
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH-----
Confidence 899999999999999888875322 224788999999988766654443 4556899999532
Q ss_pred hcCCCCCCCccEEEE
Q 014486 182 RDKDLSLKNVRHFIL 196 (423)
Q Consensus 182 ~~~~~~~~~~~~vVv 196 (423)
...+++.++++||-
T Consensus 380 -e~GidIp~v~~VId 393 (773)
T 2xau_A 380 -ETSLTIDGIVYVVD 393 (773)
T ss_dssp -HHTCCCTTEEEEEE
T ss_pred -HhCcCcCCeEEEEe
Confidence 22567778887764
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.24 E-value=1.9 Score=35.96 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=15.7
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
...+++.|++|||||.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998654
No 391
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=70.97 E-value=2.7 Score=34.83 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=17.9
Q ss_pred ceEEEccCCCcchhHHHHHHhhcc
Q 014486 85 DVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
++++.++.|.|||..++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999987655444433
No 392
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=70.95 E-value=1.7 Score=35.21 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.9
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+++.|++|||||.+.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999865
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.88 E-value=1.7 Score=34.39 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=14.8
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
|..+++.|++|||||.+.
T Consensus 5 g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445789999999999754
No 394
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=70.78 E-value=1.7 Score=35.11 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.6
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3689999999999864
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=70.71 E-value=1.7 Score=35.91 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.3
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
..+.+.||+|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999764
No 396
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=70.67 E-value=1.8 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=13.7
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+++.|++|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999865
No 397
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=70.58 E-value=2.2 Score=35.25 Aligned_cols=22 Identities=18% Similarity=-0.034 Sum_probs=17.0
Q ss_pred ccCCceEEEccCCCcchhHHHH
Q 014486 81 ILGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~ 102 (423)
..|.-+.+.||+|+|||.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3456689999999999976543
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=70.57 E-value=1.5 Score=34.74 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=11.4
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+.-+++.|++|||||.++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998653
No 399
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.54 E-value=10 Score=40.62 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred ccccCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHH
Q 014486 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 158 (423)
Q Consensus 79 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (423)
.+-.|+-+.+.||+|||||. ++.++.....-. ..=|.+....+..--.+.+++.....+.-....-.. -
T Consensus 440 ~i~~G~~vaivG~sGsGKST--ll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T------I 508 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKST--IISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT------I 508 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHH--HHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE------H
T ss_pred eecCCcEEEEEecCCCcHHH--HHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCCc------h
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCCC-----------------------------------CCCccEEEEcCcchhh
Q 014486 159 KDLLKNECPQIVVGTPGRILALARDKDLS-----------------------------------LKNVRHFILDECDKML 203 (423)
Q Consensus 159 ~~~~~~~~~~ilv~T~~~l~~~~~~~~~~-----------------------------------~~~~~~vVvDE~h~~~ 203 (423)
.+.+.-+.++ .|.+.+...++..... +.+-+++|+||+=.-+
T Consensus 509 ~eNI~~g~~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaL 585 (1321)
T 4f4c_A 509 EENISLGKEG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585 (1321)
T ss_dssp HHHHHTTCTT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred hHHHhhhccc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccC
Q ss_pred ccCCcHHHHHHHHHhCCCCceEEEEe
Q 014486 204 ESLDMRRDVQEIFKMTPHDKQVMMFS 229 (423)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~v~~S 229 (423)
+ ......+.+.+..+.+++-+|+.|
T Consensus 586 D-~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 586 D-AESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp C-TTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred C-HHHHHHHHHHHHHHhCCCEEEEEc
No 400
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=70.45 E-value=3.1 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 46799999999999999999999999888888874
No 401
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=70.44 E-value=3.5 Score=34.29 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.8
Q ss_pred ccCCceEEEccCCCcchhH
Q 014486 81 ILGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~ 99 (423)
..|.-+.+.||.|+|||..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3467789999999999974
No 402
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=70.08 E-value=2.1 Score=34.95 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+.-+++.|+.|||||.+.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998653
No 403
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.08 E-value=1.8 Score=35.08 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.7
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999764
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=69.95 E-value=2.5 Score=36.97 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.7
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.|.-+.+.||+|+|||.. +-++..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcCC
Confidence 467799999999999974 34444433
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=69.89 E-value=1.8 Score=35.45 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.5
Q ss_pred cccCCceEEEccCCCcchhHH
Q 014486 80 AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+.-+++.|++|+|||...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 344566889999999999764
No 406
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=69.89 E-value=2.9 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
..++++||.+-..+...+..|++.|+....+.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 46789999998889999999999999988887764
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.86 E-value=1.9 Score=35.44 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+++.|++|||||.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 408
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=69.59 E-value=3.7 Score=34.88 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTL--lk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL--INVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 466688999999999973 3344433
No 409
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.56 E-value=1.9 Score=34.48 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.2
Q ss_pred eEEEccCCCcchhHH
Q 014486 86 VICQAKSGMGKTAVF 100 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~ 100 (423)
+++.|+.|||||.+.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999865
No 410
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=69.53 E-value=3.8 Score=35.17 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=18.2
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.|.||.|+|||.. +-++.-+
T Consensus 44 ~Ge~~~i~G~nGsGKSTL--lk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV--AALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466788999999999963 3444443
No 411
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.48 E-value=1.9 Score=34.37 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
+..+++.|++|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4558899999999998653
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.48 E-value=3 Score=39.54 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=30.2
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 134 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 134 (423)
.|.-++|.|++|+|||...+-.+.......+. ++++++-- .-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~--~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGK--KVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCC--CEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCC--cEEEEecc-CCHHHHHHHH
Confidence 45568999999999998665545544433122 56776532 2234554444
No 413
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.46 E-value=2 Score=34.15 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.7
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-.+|.||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5789999999999753
No 414
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.44 E-value=3.9 Score=28.28 Aligned_cols=35 Identities=6% Similarity=0.161 Sum_probs=30.4
Q ss_pred CcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 289 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998999999999999999777888754
No 415
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.41 E-value=2.5 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.7
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56899999999999754
No 416
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=69.37 E-value=3.8 Score=34.92 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 31 ~Ge~~~liG~nGsGKSTL--lk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF--LRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 456688999999999973 3344443
No 417
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.37 E-value=2 Score=34.57 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.6
Q ss_pred eEEEccCCCcchhHHH
Q 014486 86 VICQAKSGMGKTAVFV 101 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~ 101 (423)
+++.|+.|||||.+.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998653
No 418
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.33 E-value=3.8 Score=34.36 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=18.1
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 31 ~Ge~~~l~G~nGsGKSTL--l~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT--LSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 466688999999999974 3444443
No 419
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=69.24 E-value=10 Score=39.66 Aligned_cols=74 Identities=5% Similarity=0.121 Sum_probs=55.1
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhC----CC----CeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-cccCCC-CCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRGID-IER 356 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~~~Gld-~~~ 356 (423)
.+.++||.++++..+.++.+.++.. ++ .+..++|+.+...+....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999988887653 56 78899999998888777777766 899999952 222122 456
Q ss_pred CCEEEE
Q 014486 357 VNIVIN 362 (423)
Q Consensus 357 ~~~vi~ 362 (423)
++++|.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777764
No 420
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.06 E-value=2.2 Score=41.33 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.8
Q ss_pred ceEEEccCCCcchhH
Q 014486 85 DVICQAKSGMGKTAV 99 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~ 99 (423)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 421
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=69.02 E-value=3.1 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCCeEEEcCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 322 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 322 (423)
..++++||.+-..+...+..|+..|+++..+.|++
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 46799999998899999999999999888888874
No 422
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=68.93 E-value=2 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.9
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.-+.+.||+|||||...
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 423
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=68.89 E-value=4 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=17.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 40 ~Gei~~l~G~NGsGKSTL--lk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT--LRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCcEEEEECCCCCCHHHH--HHHHhcC
Confidence 456688999999999974 3344433
No 424
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.86 E-value=4 Score=34.82 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=17.8
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 49 ~Gei~~liG~NGsGKSTL--lk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF--LRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHH--HHHHHcC
Confidence 356688999999999974 3344443
No 425
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.75 E-value=5.9 Score=38.99 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=48.9
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
++||+||++.-+..+++.+++. ++++..++|. ........+.++..+|+|+|.- -...+++. +++||
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv------~e~GIDip-v~~VI 478 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI------SEMGANFG-ASRVI 478 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG------GGTTCCCC-CSEEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECch------hhcceeeC-CcEEE
Confidence 8999999999999888877654 6788899984 3333445566777899999942 13355666 67666
No 426
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=68.72 E-value=4.1 Score=35.89 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.0
Q ss_pred eEEEccCCCcchhHH
Q 014486 86 VICQAKSGMGKTAVF 100 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~ 100 (423)
++|.|+.|+|||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 789999999999753
No 427
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.67 E-value=2 Score=36.58 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+++.|++|||||..+-
T Consensus 6 lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 48899999999998653
No 428
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=68.64 E-value=2.8 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.3
Q ss_pred cCCceEEEccCCCcchhHHHH
Q 014486 82 LGMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~ 102 (423)
.|+.+++.|+.|+|||..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 467799999999999976544
No 429
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.28 E-value=2.5 Score=39.87 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCCcCCCCCHHHHHHHHhCC--CCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 45 SSGFRDFLLKPELLRAIVDSG--FEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 45 ~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
...|+++.-.+.....+.+.- +..+..++... +.-.+.+++.||+|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg---~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTS---CCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 456888876666666555431 11111111111 111345999999999999754
No 430
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=68.27 E-value=2.3 Score=34.97 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.9
Q ss_pred CceEEEccCCCcchhHHH
Q 014486 84 MDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~ 101 (423)
..+++.|++|||||.+.-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998653
No 431
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.23 E-value=3.1 Score=36.44 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~ 102 (423)
++-+++.+++|+|||.....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34578999999999976533
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.09 E-value=2.1 Score=35.41 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.7
Q ss_pred eEEEccCCCcchhHHH
Q 014486 86 VICQAKSGMGKTAVFV 101 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~ 101 (423)
+++.|++|||||.+.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998653
No 433
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=68.05 E-value=4.5 Score=35.36 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.6
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 455788999999999754
No 434
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.87 E-value=4.3 Score=34.69 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||.. +-++.-+
T Consensus 32 ~Ge~~~liG~nGsGKSTL--l~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL--LQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 466688999999999974 3344443
No 435
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=67.83 E-value=2.4 Score=39.19 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999764
No 436
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.50 E-value=2.1 Score=38.57 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=13.8
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999764
No 437
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=67.39 E-value=4.3 Score=36.31 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=23.0
Q ss_pred CceEEEccCCCcchhHHHHHHhhcc-CCCC--CCeEEEEEec
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQT-EPNP--GQVTALVLCH 122 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~-~~~~--~~~~~lil~P 122 (423)
.-+.+.||+|+|||......+.... .+.. .+.+++++.-
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 3478999999999976544333321 1111 1226677754
No 438
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=67.34 E-value=3.1 Score=33.01 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.2
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
.+.+.||.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 439
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.31 E-value=4 Score=32.25 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.9
Q ss_pred ceEEEccCCCcchhH
Q 014486 85 DVICQAKSGMGKTAV 99 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~ 99 (423)
-+++.|+.|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999964
No 440
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.28 E-value=2.3 Score=34.38 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+.|.|++|||||.+.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 441
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=67.22 E-value=4.4 Score=34.92 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=17.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|+|||+. +-++.-+
T Consensus 46 ~Ge~~~liG~NGsGKSTL--lk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL--LNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 456688999999999974 3344433
No 442
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=67.08 E-value=2.8 Score=36.91 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=17.8
Q ss_pred cCCceEEEccCCCcchhHHHHHHh
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTL 105 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~ 105 (423)
.+..+++.||+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345579999999999976554443
No 443
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=66.91 E-value=18 Score=35.57 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=54.5
Q ss_pred EEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchH---HHHHHHhc--CCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 118 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK---IHKDLLKN--ECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 118 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
+|+++++.-+.++++.+.+. ++.+..++|+.... .....+.+ +..+|+|+|.- -...+++ +++
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi------~e~GlDi-~v~ 391 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA------IGMGLNL-SIR 391 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG------GGSSCCC-CBS
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH------HHCCcCc-Ccc
Confidence 66688888888888777763 67899999998766 44556666 66899999962 2346777 899
Q ss_pred EEEEcCcchh
Q 014486 193 HFILDECDKM 202 (423)
Q Consensus 193 ~vVvDE~h~~ 202 (423)
+||.-.....
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998887653
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.89 E-value=2.3 Score=35.77 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.5
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
...+++.|+.|||||.++-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998653
No 445
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=66.75 E-value=2.3 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.5
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.-+++.||.|||||+..
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999754
No 446
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=66.70 E-value=2.6 Score=39.49 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=15.9
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998653
No 447
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=66.63 E-value=3.5 Score=32.42 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=13.1
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+.+.|+.|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 448
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=66.51 E-value=2.4 Score=39.74 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCCcCCCCCHHHHHHHHhC--CCCCCChhhhhcccccccCCceEEEccCCCcchhHH
Q 014486 46 SGFRDFLLKPELLRAIVDS--GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~ii~~~tGsGKT~~~ 100 (423)
..|+++.-.+...+.+.+. .+..+..++... +...+.+++.||+|+|||+.+
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 4577776666665555543 011222222211 112356999999999999764
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=66.27 E-value=2.5 Score=34.09 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=23.1
Q ss_pred eEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHH
Q 014486 86 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 132 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 132 (423)
+.+.|++|||||.+.-. +.... + +.+..+-.++.+...
T Consensus 15 IgltG~~GSGKSTva~~--L~~~l--g-----~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEI--LKNKY--G-----AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEECSTTSSHHHHHHH--HHHHH--C-----CEEEEHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH--HHHhc--C-----CEEEECcHHHHHHHH
Confidence 77899999999986533 22221 1 334455566555544
No 450
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.08 E-value=1.9 Score=36.56 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.0
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+++.|++|||||..+
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999864
No 451
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=65.78 E-value=2.4 Score=38.34 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.1
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
+-.++.|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34799999999999753
No 452
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=65.71 E-value=7.3 Score=28.80 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=30.2
Q ss_pred CcEEEEE-cChhhHHHHHHHHHhCCCCeEEEcCCCC
Q 014486 289 NQVVIFV-KSVSRAAELNKLLVECNFPSICIHSGMS 323 (423)
Q Consensus 289 ~~~ivf~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 323 (423)
.++|+|| .+-..+...+..|+..|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 4778888999999999998889999864
No 453
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=65.64 E-value=3.8 Score=35.83 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=15.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.|.-+.|.||+|+|||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4667899999999999743
No 454
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.54 E-value=2.8 Score=35.48 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.1
Q ss_pred CCceEEEccCCCcchhHH
Q 014486 83 GMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~ 100 (423)
+..+.|.||+|||||...
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999754
No 455
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=65.38 E-value=3 Score=34.94 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred ccCCceEEEccCCCcchhH
Q 014486 81 ILGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~ 99 (423)
..|.-+.+.||.|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466789999999999963
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.83 E-value=2.7 Score=34.52 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+.+.|+.|||||.+.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 457
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=64.62 E-value=4 Score=36.01 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=15.4
Q ss_pred CCceEEEccCCCcchhHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVL 102 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~ 102 (423)
++-+.+.+++|+|||.....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44578889999999976543
No 458
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=64.54 E-value=7.5 Score=36.11 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=49.0
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
++||.+|++.-+.++++.+++. ++++..+++... ......+.++..+|+|+|.- -...+++.+ ++||
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~v------~~~GiDip~-~~VI 256 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTDI------SEMGANFRA-GRVI 256 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECGG------GGSSCCCCC-SEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECCH------HHhCcCCCC-CEEE
Confidence 7999999999999888877653 677888888654 23344566777899999952 234566777 6666
No 459
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.53 E-value=3.8 Score=37.32 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=46.3
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHH---HHHhcCCCcEEEechHHHHHHHhcCCCCCCCcc
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 192 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~ 192 (423)
++||.++++.-+..+++.+.+. ++.+..++|+....... +.+.++..+|+|+|.- -...+++.+++
T Consensus 282 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~v~ 350 (414)
T 3eiq_A 282 QAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LARGIDVQQVS 350 (414)
T ss_dssp SCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC--CCGGGCS
T ss_pred cEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cccCCCccCCC
Confidence 7899999999998888777653 67888889887655443 3455677789999952 23356677788
Q ss_pred EEEEcC
Q 014486 193 HFILDE 198 (423)
Q Consensus 193 ~vVvDE 198 (423)
+||.-.
T Consensus 351 ~Vi~~~ 356 (414)
T 3eiq_A 351 LVINYD 356 (414)
T ss_dssp CEEESS
T ss_pred EEEEeC
Confidence 877543
No 460
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.47 E-value=3 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.0
Q ss_pred ccCCceEEEccCCCcchhH
Q 014486 81 ILGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~ 99 (423)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455588999999999964
No 461
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=64.12 E-value=19 Score=24.00 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=28.0
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCCC-eEEEcCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGM 322 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 322 (423)
+..++++||.+-..+...+..|++.|+. +..+ |++
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 3467999999988999999999999986 4445 654
No 462
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=63.67 E-value=4.4 Score=35.39 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.3
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+.-+.+.||+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556889999999999754
No 463
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.65 E-value=23 Score=35.58 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=52.7
Q ss_pred HHhhcCCcEEEEEcChhhHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c---------
Q 014486 283 LDALDFNQVVIFVKSVSRAAELNKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V--------- 348 (423)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~--------- 348 (423)
+..+.+..++|.+++.+.|.+.++.+. ..|+.+..+.|+++...|.... ..+|+++|+- +
T Consensus 119 l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m 192 (844)
T 1tf5_A 119 LNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNM 192 (844)
T ss_dssp HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhh
Confidence 345566789999999999988766654 3589999999999987665442 3689999951 2
Q ss_pred ---ccCCCCCCCCEEE
Q 014486 349 ---GRGIDIERVNIVI 361 (423)
Q Consensus 349 ---~~Gld~~~~~~vi 361 (423)
...+++..++++|
T Consensus 193 ~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 193 VLYKEQMVQRPLHFAV 208 (844)
T ss_dssp CSSGGGCCCCCCCEEE
T ss_pred hcchhhhcccCCCEEE
Confidence 1235666777766
No 464
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=63.35 E-value=4.3 Score=32.56 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred CCCccEEEEcCcchhhcc-CCcHHHHHHHHHhCCCCceEEEEeccCC
Q 014486 188 LKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLS 233 (423)
Q Consensus 188 ~~~~~~vVvDE~h~~~~~-~~~~~~~~~~~~~~~~~~~~v~~SAT~~ 233 (423)
..+.+++|+||+..+... ..+...+..+... ...+++-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 466789999997665321 3455555555553 333555566653
No 465
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.94 E-value=3.2 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCc--eEEEccCCCcchhHH
Q 014486 83 GMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 83 ~~~--~ii~~~tGsGKT~~~ 100 (423)
|.+ ++..|.||||||.+.
T Consensus 83 G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEE
Confidence 666 688999999999864
No 466
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=62.76 E-value=16 Score=36.80 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c----ccC-C-CCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GRG-I-DIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~----~~G-l-d~~~ 356 (423)
+.++||.+++...+..+.+.++.. ++.+..++|+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999998887777664 899999999987665433322 25689999842 1 122 2 4556
Q ss_pred CCEEEE
Q 014486 357 VNIVIN 362 (423)
Q Consensus 357 ~~~vi~ 362 (423)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677764
No 467
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=62.56 E-value=5.9 Score=35.46 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=17.7
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|||||.. +-++.-+
T Consensus 29 ~Ge~~~llGpsGsGKSTL--Lr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL--LRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEECCCCchHHHH--HHHHhcC
Confidence 356688999999999974 3444433
No 468
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.47 E-value=3.2 Score=33.76 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.0
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.-.+|.||+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34789999999999753
No 469
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=62.28 E-value=3.7 Score=34.97 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=19.0
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhccC
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQTE 109 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 109 (423)
.|.-+.+.||.|+|||.. +-++..+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI--AKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhccC
Confidence 466789999999999974 34444444
No 470
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.18 E-value=3.3 Score=33.58 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.1
Q ss_pred CceEEEccCCCcchhHH
Q 014486 84 MDVICQAKSGMGKTAVF 100 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~ 100 (423)
.-+.+.|+.|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44789999999999754
No 471
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=62.12 E-value=6.2 Score=27.99 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhCCCC-eEEEcCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGM 322 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~~~~-~~~~~~~~ 322 (423)
..++|+||.+-..+...+..|+..|+. +..+.|++
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 467999999988999999999999995 77788874
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=61.91 E-value=7.5 Score=33.08 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=14.8
Q ss_pred CCceEEEccCCCcchhH
Q 014486 83 GMDVICQAKSGMGKTAV 99 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~ 99 (423)
|.-+.+.||.|+|||..
T Consensus 30 Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp SSEEEEECCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 66688999999999974
No 473
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=61.89 E-value=3.5 Score=39.50 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=16.0
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667999999999999754
No 474
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=61.69 E-value=72 Score=28.27 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+.+.|++|+|||....
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997653
No 475
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=61.54 E-value=7.5 Score=33.00 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCceEEEccCCCcchhHHHHHHhhccCCCCCCeEEEEEecChHHHHHHHHHHHHH
Q 014486 83 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 137 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 137 (423)
|..+++.+++|+|||...+.-+.+.+..+. ++++++-. +-..++...++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 455788878888888444444444444333 67777643 3344455555554
No 476
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.45 E-value=3.3 Score=36.01 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.2
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+++.|++|||||..+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 477
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=61.37 E-value=11 Score=35.75 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=46.9
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c----ccC-C-CCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GRG-I-DIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~----~~G-l-d~~~ 356 (423)
..++||.++++..+..+.+.++.. ++.+..++|+.+...+...+. ...+|+|+|.- + ..+ + .+.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 578999999999988888877664 899999999987655433322 13679999842 2 222 3 5667
Q ss_pred CCEEEE
Q 014486 357 VNIVIN 362 (423)
Q Consensus 357 ~~~vi~ 362 (423)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 478
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=61.29 E-value=3 Score=41.47 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=20.1
Q ss_pred cccccccCCc--eEEEccCCCcchhHH
Q 014486 76 CIPQAILGMD--VICQAKSGMGKTAVF 100 (423)
Q Consensus 76 ~i~~~~~~~~--~ii~~~tGsGKT~~~ 100 (423)
.+..++.|.+ ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788877 677799999999864
No 479
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.26 E-value=3.4 Score=34.90 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.3
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
.+.|.|++|||||.++-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 480
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=61.06 E-value=6 Score=33.14 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=16.3
Q ss_pred CceEEEccCCCcchhHHHHHHhhcc
Q 014486 84 MDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 84 ~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.-+.+.||.|+|||.. +-++.-+
T Consensus 25 e~~~liG~nGsGKSTL--l~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF--LELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHH--HHHHHTS
T ss_pred EEEEEECCCCCCHHHH--HHHHhCC
Confidence 4577999999999974 3344443
No 481
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=60.97 E-value=4.5 Score=35.25 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=64.2
Q ss_pred CcEEEEEcChhhHHHHHHHHHhC-----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCcc------c-cCCCCCC
Q 014486 289 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV------G-RGIDIER 356 (423)
Q Consensus 289 ~~~ivf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~~------~-~Gld~~~ 356 (423)
.++||.++++..+.++++.++.. +..+..+.++...... .....+|+|+|.-. . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 36999999999999988777653 4566677766542211 13456899999532 1 3567778
Q ss_pred CCEEEEccCC-----CCcchhhhcccccCCCCCceEEEEEecCcccHHHHHHHHHHHh
Q 014486 357 VNIVINYDMP-----DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMF 409 (423)
Q Consensus 357 ~~~vi~~~~~-----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (423)
++++|.-... ........++-+..+ ...-+++++............+++.
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~---~~~q~i~~SAT~~~~v~~~a~~~l~ 290 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLP---RNCQMLLFSATFEDSVWKFAQKVVP 290 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSC---TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCC---CCCEEEEEeccCCHHHHHHHHHHCC
Confidence 8887753321 112222222222222 2234555565566666666665553
No 482
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=60.92 E-value=3.4 Score=35.63 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.4
Q ss_pred ceEEEccCCCcchhHHH
Q 014486 85 DVICQAKSGMGKTAVFV 101 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~~ 101 (423)
-+.+.|+.|||||.++-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998653
No 483
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=60.91 E-value=6.5 Score=35.15 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=17.6
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
.|.-+.+.||.|||||+. +-++.-
T Consensus 40 ~Ge~~~llGpnGsGKSTL--Lr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTI--LRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHHH--HHHHhC
Confidence 466688999999999974 344443
No 484
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=60.88 E-value=24 Score=35.36 Aligned_cols=57 Identities=16% Similarity=0.012 Sum_probs=43.7
Q ss_pred HhhcCCcEEEEEcChhhHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcC
Q 014486 284 DALDFNQVVIFVKSVSRAAELNKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 346 (423)
Q Consensus 284 ~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~ 346 (423)
....+..++|.+++...|.+.++.+. ..|+.+..+.|+++...+.... ..+|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 34556789999999999887766654 4589999999999976655432 368999995
No 485
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=60.84 E-value=6.7 Score=35.17 Aligned_cols=25 Identities=36% Similarity=0.266 Sum_probs=17.9
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
.|.-+.+.||.|||||.. +-++.-+
T Consensus 28 ~Ge~~~llGpnGsGKSTL--Lr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTT--LLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHHTS
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHCC
Confidence 356688999999999974 3444433
No 486
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=60.60 E-value=6.7 Score=35.42 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=17.5
Q ss_pred cCCceEEEccCCCcchhHHHHHHhhc
Q 014486 82 LGMDVICQAKSGMGKTAVFVLSTLQQ 107 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~~~~~~~~ 107 (423)
.|.-+.+.||.|||||.. +-++.-
T Consensus 28 ~Ge~~~llGpsGsGKSTL--Lr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTL--LRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHHT
T ss_pred CCCEEEEEcCCCchHHHH--HHHHHc
Confidence 356688999999999974 344443
No 487
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=60.21 E-value=29 Score=35.02 Aligned_cols=74 Identities=22% Similarity=0.117 Sum_probs=53.1
Q ss_pred HHhhcCCcEEEEEcChhhHHHHHHHHH----hCCCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c-----c---
Q 014486 283 LDALDFNQVVIFVKSVSRAAELNKLLV----ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----G--- 349 (423)
Q Consensus 283 l~~~~~~~~ivf~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~-----~--- 349 (423)
+..+.+..++|.+++...|.+.++.+. ..|+.+..+.|+++...|.... ..+|+++|+- + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 455666789999999999877766654 4589999999999987665443 3689999952 1 1
Q ss_pred ----cCCCCCCCCEEEE
Q 014486 350 ----RGIDIERVNIVIN 362 (423)
Q Consensus 350 ----~Gld~~~~~~vi~ 362 (423)
..+.+..++++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 1355566777663
No 488
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.06 E-value=7.3 Score=37.81 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.4
Q ss_pred cccCCceEEEccCCCcchhHH
Q 014486 80 AILGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 80 ~~~~~~~ii~~~tGsGKT~~~ 100 (423)
+..+..+++.||+|+|||..+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 345678999999999999764
No 489
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=59.99 E-value=3.7 Score=35.64 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.5
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+.|.|++|||||..+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999754
No 490
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=59.93 E-value=2.6 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.1
Q ss_pred ceEEEccCCCcchhHH
Q 014486 85 DVICQAKSGMGKTAVF 100 (423)
Q Consensus 85 ~~ii~~~tGsGKT~~~ 100 (423)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999754
No 491
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=59.90 E-value=4.2 Score=34.32 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=18.4
Q ss_pred ccCCceEEEccCCCcchhHHHHHHhhcc
Q 014486 81 ILGMDVICQAKSGMGKTAVFVLSTLQQT 108 (423)
Q Consensus 81 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~ 108 (423)
..|.-+.+.||.|+|||.. +-++.-+
T Consensus 24 ~~Ge~~~liG~NGsGKSTL--lk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL--LARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHH--HHHHhCC
Confidence 3466688999999999973 3344443
No 492
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=59.85 E-value=4.3 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.2
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.|.-+.+.||.|+|||..
T Consensus 45 ~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999974
No 493
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=59.83 E-value=4.2 Score=34.33 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.|.-+.+.||.|+|||..
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 494
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.71 E-value=7.3 Score=34.29 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=13.0
Q ss_pred eEEEccCCCcchhHH
Q 014486 86 VICQAKSGMGKTAVF 100 (423)
Q Consensus 86 ~ii~~~tGsGKT~~~ 100 (423)
+.+.||+|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999754
No 495
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=59.71 E-value=3.9 Score=33.99 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.7
Q ss_pred cCCceEEEccCCCcchhHH
Q 014486 82 LGMDVICQAKSGMGKTAVF 100 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~~ 100 (423)
.+.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999864
No 496
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=59.60 E-value=11 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=30.7
Q ss_pred cCCcEEEEEcChhhHHHHHHHHHhCCC-CeEEEcCCCC
Q 014486 287 DFNQVVIFVKSVSRAAELNKLLVECNF-PSICIHSGMS 323 (423)
Q Consensus 287 ~~~~~ivf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~ 323 (423)
...++||||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 346899999998889999999999999 4888988864
No 497
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.54 E-value=13 Score=36.23 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=48.1
Q ss_pred EEEEEecChHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHHHHHHhcCCCcEEEechHHHHHHHhcCCCCCCCccEEE
Q 014486 116 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 195 (423)
Q Consensus 116 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vV 195 (423)
++||.++++.-+..+++.+++. ++++..++|. ........+.++..+|+|+|.- -...+++. +++||
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTdv------~~rGiDi~-v~~VI 423 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTDI------SEMGANFR-AGRVI 423 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECGG------GGTTCCCC-CSEEE
T ss_pred CEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECcH------HHcCcccC-ceEEE
Confidence 7999999999999998888764 6788888875 3333445566677899999952 12345564 66663
No 498
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=59.53 E-value=7.2 Score=34.99 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=14.9
Q ss_pred cCCceEEEccCCCcchhH
Q 014486 82 LGMDVICQAKSGMGKTAV 99 (423)
Q Consensus 82 ~~~~~ii~~~tGsGKT~~ 99 (423)
.|.-+.+.||.|||||..
T Consensus 28 ~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 356688999999999974
No 499
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.44 E-value=12 Score=35.56 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=48.7
Q ss_pred CCcEEEEEcChhhHHHHHHHHHhC----CCCeEEEcCCCCHHHHHHHHHhhhcCCccEEEEcCc-c----ccC-C-CCCC
Q 014486 288 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----GRG-I-DIER 356 (423)
Q Consensus 288 ~~~~ivf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ili~T~~-~----~~G-l-d~~~ 356 (423)
..++||.++++..+..+.+.+... ++.+..++|+.+...+...+. +..+|+|+|.- + ..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888887777664 889999999986554433222 13679999842 2 122 2 4556
Q ss_pred CCEEEE
Q 014486 357 VNIVIN 362 (423)
Q Consensus 357 ~~~vi~ 362 (423)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677664
No 500
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.25 E-value=4.1 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.1
Q ss_pred CCceEEEccCCCcchhHHH
Q 014486 83 GMDVICQAKSGMGKTAVFV 101 (423)
Q Consensus 83 ~~~~ii~~~tGsGKT~~~~ 101 (423)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998653
Done!