Query 014489
Match_columns 423
No_of_seqs 116 out of 312
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 3.6E-95 8E-100 699.3 25.4 402 1-423 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 3.7E-51 8.1E-56 415.6 30.7 379 9-415 1-385 (385)
3 COG0679 Predicted permeases [G 100.0 5.9E-32 1.3E-36 267.5 23.8 308 7-420 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 7.7E-31 1.7E-35 260.8 25.8 316 6-417 2-319 (321)
5 PRK09903 putative transporter 100.0 2.4E-29 5.2E-34 249.4 26.5 302 12-417 7-309 (314)
6 TIGR00841 bass bile acid trans 97.9 4.4E-05 9.5E-10 75.0 8.3 109 306-420 13-122 (286)
7 PF01758 SBF: Sodium Bile acid 96.2 0.015 3.3E-07 53.3 7.1 107 308-419 5-112 (187)
8 TIGR00841 bass bile acid trans 96.2 0.11 2.4E-06 51.0 13.5 138 10-163 137-275 (286)
9 COG0385 Predicted Na+-dependen 95.9 0.041 8.9E-07 54.5 8.8 111 304-420 41-152 (319)
10 TIGR00832 acr3 arsenical-resis 95.6 0.13 2.9E-06 51.5 11.6 106 310-420 52-158 (328)
11 PF13593 DUF4137: SBF-like CPA 93.5 0.27 5.9E-06 48.9 8.0 113 303-419 33-147 (313)
12 TIGR00832 acr3 arsenical-resis 85.9 2.3 5.1E-05 42.6 7.1 101 15-116 182-289 (328)
13 PF13593 DUF4137: SBF-like CPA 83.3 18 0.00039 36.0 12.1 132 13-158 163-302 (313)
14 COG0385 Predicted Na+-dependen 81.8 9.2 0.0002 38.1 9.2 44 74-117 224-267 (319)
15 TIGR03802 Asp_Ala_antiprt aspa 64.3 22 0.00047 38.4 7.6 156 10-173 8-189 (562)
16 PRK03818 putative transporter; 63.0 87 0.0019 33.8 11.8 133 35-174 54-188 (552)
17 PRK12460 2-keto-3-deoxyglucona 55.1 71 0.0015 31.8 8.6 103 13-124 165-268 (312)
18 PF05684 DUF819: Protein of un 52.0 74 0.0016 32.6 8.6 80 14-96 25-108 (378)
19 PRK04972 putative transporter; 48.5 1E+02 0.0022 33.3 9.5 106 12-122 12-138 (558)
20 COG3493 CitS Na+/citrate sympo 44.0 3E+02 0.0065 28.3 11.1 94 31-127 91-195 (438)
21 TIGR00210 gltS sodium--glutama 43.0 1.5E+02 0.0032 30.7 9.2 88 35-130 270-363 (398)
22 PRK11339 abgT putative aminobe 42.0 83 0.0018 33.6 7.3 76 15-92 91-172 (508)
23 PF03616 Glt_symporter: Sodium 42.0 3.1E+02 0.0068 27.9 11.3 88 35-130 272-365 (368)
24 PF05684 DUF819: Protein of un 40.9 1.4E+02 0.0031 30.6 8.7 131 15-164 241-372 (378)
25 COG1346 LrgB Putative effector 37.6 2.3E+02 0.0049 27.0 8.7 117 36-170 53-170 (230)
26 PF03812 KdgT: 2-keto-3-deoxyg 37.0 1.2E+02 0.0026 30.2 7.1 109 11-127 168-277 (314)
27 PF03390 2HCT: 2-hydroxycarbox 37.0 4.7E+02 0.01 27.2 11.6 104 18-127 63-178 (414)
28 TIGR00783 ccs citrate carrier 36.0 1.4E+02 0.003 30.3 7.5 82 17-101 207-294 (347)
29 PRK05326 potassium/proton anti 33.8 3.4E+02 0.0075 29.1 10.7 97 22-124 252-350 (562)
30 COG2855 Predicted membrane pro 33.8 43 0.00093 33.6 3.4 103 59-171 78-181 (334)
31 COG3763 Uncharacterized protei 32.6 77 0.0017 24.3 3.8 25 71-95 2-26 (71)
32 COG0475 KefB Kef-type K+ trans 32.4 2.2E+02 0.0049 29.2 8.6 78 21-101 250-328 (397)
33 TIGR00783 ccs citrate carrier 30.7 5.9E+02 0.013 25.9 11.3 92 31-126 5-108 (347)
34 COG5505 Predicted integral mem 29.6 3.5E+02 0.0076 27.1 8.8 62 31-95 47-108 (384)
35 PF06305 DUF1049: Protein of u 29.2 80 0.0017 23.3 3.6 25 73-97 18-42 (68)
36 PF09964 DUF2198: Uncharacteri 29.2 1.8E+02 0.004 22.5 5.4 16 82-97 52-67 (74)
37 PRK04288 antiholin-like protei 26.8 3.7E+02 0.008 25.6 8.3 85 35-124 55-140 (232)
38 PF03601 Cons_hypoth698: Conse 25.9 79 0.0017 31.4 3.8 144 14-171 26-172 (305)
39 PF03616 Glt_symporter: Sodium 25.3 6.1E+02 0.013 25.8 10.2 106 56-171 73-186 (368)
40 TIGR00793 kdgT 2-keto-3-deoxyg 25.1 1.9E+02 0.0041 28.8 6.1 106 11-124 168-274 (314)
41 PRK11677 hypothetical protein; 24.3 87 0.0019 27.2 3.3 20 80-99 7-26 (134)
42 COG2323 Predicted membrane pro 23.3 2.1E+02 0.0046 27.1 6.0 76 14-96 8-83 (224)
43 KOG2718 Na+-bile acid cotransp 23.2 1.6E+02 0.0034 30.2 5.4 82 332-419 145-227 (371)
44 PRK01844 hypothetical protein; 22.4 1.5E+02 0.0032 22.9 3.8 25 72-96 3-27 (72)
45 PRK05274 2-keto-3-deoxyglucona 22.4 1.1E+02 0.0024 30.7 4.1 100 15-122 174-274 (326)
46 KOG2262 Sexual differentiation 21.5 25 0.00054 38.4 -0.7 95 66-170 438-534 (761)
47 TIGR03082 Gneg_AbrB_dup membra 21.3 2.8E+02 0.0061 24.3 6.1 46 56-101 56-105 (156)
48 PF03806 ABG_transport: AbgT p 20.3 5E+02 0.011 27.8 8.5 77 15-93 81-163 (502)
49 PF06295 DUF1043: Protein of u 20.1 1E+02 0.0022 26.4 2.9 22 79-100 2-23 (128)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.6e-95 Score=699.32 Aligned_cols=402 Identities=50% Similarity=0.931 Sum_probs=338.8
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHH
Q 014489 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (423)
Q Consensus 1 m~~~~li~~a~--~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~ 78 (423)
|+++++.-.|- +|++||++++.+|+++|+++.|++++++||.+|+++|++|+|||+|+|+|+++|.|++.+||+||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 78999988888 9999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhH
Q 014489 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (423)
Q Consensus 79 ~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~ 158 (423)
+.+.+++|.++||+++|++|+|+++|+++++||+|||+||||++++.|+|++++.|||++|.|..||.+|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccccchhhH-HhhhhcCCCCCCCcccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccCccc
Q 014489 159 FIWSYSYQLIKQSSVRY-KALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS 237 (423)
Q Consensus 159 ~~ws~g~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (423)
++|||+|+++-++..+. .+.+++ +.+...+ +. ..++ .+...|++++.. ..+..+|++++
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~~---~~---~~~s--~e~~~~~~~k~~----ll~~~en~~~~------- 221 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKES-PVEALLE---SV---PQPS--VESDEDSTCKTL----LLASKENRNNQ------- 221 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChh-hhhhhhh---cc---CCCC--cccccccccccc----cccccccCCCc-------
Confidence 99999999776653221 111111 0110000 00 0000 000000000100 00111111111
Q ss_pred ccccchhhhhHhHH-HHHHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhcc
Q 014489 238 HLQTRKESFWKRSL-EFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGG 316 (423)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa 316 (423)
...++....+|.+ ...+..++.+++||++|+++|+++|.|||||+++|++++|+++++|+++.+|+++||+++++||+
T Consensus 222 -~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGg 300 (408)
T KOG2722|consen 222 -VVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGG 300 (408)
T ss_pred -eeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhcc
Confidence 0001101111111 11123389999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCchhhhHHhhccCCchHHHHHHHHhccCcchHH
Q 014489 317 NLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEE 395 (423)
Q Consensus 317 ~La~~~~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~-~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e 395 (423)
||++|++++.++.|++++++++||+++|.+|++++..++|+|.++ |||+|+||++||+++|||+|+.++||++|.+|+|
T Consensus 301 nL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~E 380 (408)
T KOG2722|consen 301 NLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERE 380 (408)
T ss_pred ccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014489 396 CSVLFLWTYLVAALALTGWSMVYMWILS 423 (423)
Q Consensus 396 ~s~~l~~~y~~~~itl~~~~~~~l~~~~ 423 (423)
|++++||+|+++.+++++|+++|+|++.
T Consensus 381 cs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 381 CSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999999999999873
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.7e-51 Score=415.59 Aligned_cols=379 Identities=28% Similarity=0.485 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 014489 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (423)
Q Consensus 9 ~a~~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g~~ 88 (423)
+++++++++++++++||+++ |+|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36899999999999999998 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhccccc
Q 014489 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (423)
Q Consensus 89 ~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll 168 (423)
++++..|++|.|+++|+.+..+|+|+|++++|+++++++ ||+ +|.+|+++|..+++++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999 444 8999999999999999999999988
Q ss_pred ccchhhHHhhhhcCCCC-C-CCcccCccccccccccccCCCCCCcc-cchhhc-cCCCCCCCCccccc-cCcccccccch
Q 014489 169 KQSSVRYKALAQAAEPE-E-VPKEVNKDFDANAQTQLLRGTTDDQE-DVSVLV-ASTKSSSDPECQII-VPQASHLQTRK 243 (423)
Q Consensus 169 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 243 (423)
+.++++.+..+++++.. . .++..++++...++++ .+..+++. +....+ .+.+...+.++... .++.......+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS--PSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAE 223 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCccc--ccccccccccCCcccccccccccccchhhccCCcccccchhh
Confidence 87654332221110000 0 0000000000000000 00000000 000000 00000000000000 00000000011
Q ss_pred hhhhHhHHHH-HHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhcccccccc
Q 014489 244 ESFWKRSLEF-LHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL 322 (423)
Q Consensus 244 ~~~~~~~~~~-~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa~La~~~ 322 (423)
.+.+++.++. .+..++.++|||++|+++|++++++|+++++++. .+++++++++|++++|++|+++|++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~ 298 (385)
T PF03547_consen 224 QKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGP 298 (385)
T ss_pred hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 1112222222 2334799999999999999999999999998766 799999999999999999999999999988
Q ss_pred ccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhccCcchHHHHHHHHH
Q 014489 323 RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLW 402 (423)
Q Consensus 323 ~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e~s~~l~~ 402 (423)
++...+++.....++.|++++|++++++++.+. -|+....+++++.|+|||++..++|+.|+.++++++..++|
T Consensus 299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~ 372 (385)
T PF03547_consen 299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFW 372 (385)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777778888877899999999999999998764 25667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 014489 403 TYLVAALALTGWS 415 (423)
Q Consensus 403 ~y~~~~itl~~~~ 415 (423)
+|+++++++|+|+
T Consensus 373 ~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 373 STLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=267.46 Aligned_cols=308 Identities=22% Similarity=0.340 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHH
Q 014489 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (423)
Q Consensus 7 i~~a~~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g 86 (423)
++..+.+++++++++++||+++ |.|+++++..|.+|++++++.+|||+|++++++-..+. +++..+++....+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 99999999999999999999999999999999886666 66766677666666667
Q ss_pred HHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhccc
Q 014489 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (423)
Q Consensus 87 ~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ 166 (423)
.+...+..|.++.+++++.....+.+|+|++++++++..++ ||+ +|++|.++|..+++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 77666777888888889999999999999999999998888 776 79999999999999999999998
Q ss_pred ccccchhhHHhhhhcCCCCCCCcccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccCcccccccchhhh
Q 014489 167 LIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246 (423)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (423)
.+...+++. + +..
T Consensus 146 ~l~~~~~~~-----------------------------------------------------------------~--~~~ 158 (311)
T COG0679 146 LLARSGGGT-----------------------------------------------------------------N--KSL 158 (311)
T ss_pred HHHHhcCCc-----------------------------------------------------------------h--hHH
Confidence 664431100 0 000
Q ss_pred hHhHHHHHHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccccCC
Q 014489 247 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSST 326 (423)
Q Consensus 247 ~~~~~~~~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa~La~~~~~s~ 326 (423)
.+...+-+.||+++|.++|++.... ++ ..+.++.++++++|++++|+.++++|+.|+. .+.++
T Consensus 159 -------~~~~~~~~~nP~i~a~i~g~~~~~~----~i-----~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~ 221 (311)
T COG0679 159 -------LSVLKKLLTNPLIIALILGLLLNLL----GI-----SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKG 221 (311)
T ss_pred -------HHHHHHHHhCcHHHHHHHHHHHHHc----CC-----CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhcc
Confidence 0123577899999999999999443 22 2244899999999999999999999999988 44456
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 014489 327 LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLV 406 (423)
Q Consensus 327 ~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e~s~~l~~~y~~ 406 (423)
...+.+......|+++.|++...+.+.. | + ++...-++.++.++|+|.+...+++.++.+++..+...+.|..+
T Consensus 222 ~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~-l--~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~l 295 (311)
T COG0679 222 SKPPIILIALSLKLLLAPLVALLVAKLL---G-L--SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLL 295 (311)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHc---C-C--ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 6667777777789999999999976654 2 2 34444889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014489 407 AALALTGWSMVYMW 420 (423)
Q Consensus 407 ~~itl~~~~~~~l~ 420 (423)
+++|+|.|..++.+
T Consensus 296 s~~t~p~~~~~l~~ 309 (311)
T COG0679 296 SLLTLPLLILLLLR 309 (311)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.98 E-value=7.7e-31 Score=260.82 Aligned_cols=316 Identities=18% Similarity=0.180 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHH
Q 014489 6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL 84 (423)
Q Consensus 6 li~~a~~~v~kV~li~~~G~~l-a~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~ 84 (423)
++|..+..++.++++.++||++ . |+|+++++..|.+|++++|+.+||++|+++++.-..+.....++..+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999 7 889999999999999999999999999999985443344555555555566667
Q ss_pred HHHHHHHHHHH-hccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhh
Q 014489 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSY 163 (423)
Q Consensus 85 ~g~~~g~l~~~-~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~ 163 (423)
..++++|++.| .+|.+++.++....++.|+|++.+.+++++++ ||++. . .+..|...+.....+..|++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~~~--~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGEEG--A-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcccc--h-hhhHHHHHHHhccchhHHHH
Confidence 78889999998 88889889999999999999999999999999 77621 0 12677777887778899999
Q ss_pred cccccccchhhHHhhhhcCCCCCCCcccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccCcccccccch
Q 014489 164 SYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRK 243 (423)
Q Consensus 164 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (423)
|+.+.+...++ ++ +++
T Consensus 150 ~~~~~~~~~~~-----~~-----------------------------------------------------------~~~ 165 (321)
T TIGR00946 150 GLFLVSEDGAG-----GE-----------------------------------------------------------GSG 165 (321)
T ss_pred HHHHhcccccc-----cc-----------------------------------------------------------ccc
Confidence 97544221000 00 000
Q ss_pred hhhhHhHHHHHHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccc
Q 014489 244 ESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLR 323 (423)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa~La~~~~ 323 (423)
++.+++.++ ...+-+.||+++|.++|+++..... ..+.++.++++++|++++|+.|+++|+.+.. +
T Consensus 166 ~~~~~~~~~---~~~~~~~nP~iia~i~Gl~~~~~~i---------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~ 231 (321)
T TIGR00946 166 ESTRLMLIF---VWKKLIKFPPLWAPLLSVILSLVGF---------KMPGLILKSISILSGATTPMALFSLGLALSP--R 231 (321)
T ss_pred hhHHHHHHH---HHHHHHhCCChHHHHHHHHHHHHhh---------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--h
Confidence 011111211 2245668999999999999966531 2357999999999999999999999999964 2
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhccCcchHHHHHHHHHH
Q 014489 324 SSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWT 403 (423)
Q Consensus 324 ~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e~s~~l~~~ 403 (423)
+.+.+++.+...++.|+++.|++...+.... +-|+...-+++++.++|+|.+...+++.|+.++++.+...+++
T Consensus 232 ~~~~~~~~~~~~~~~klil~P~i~~~~~~~~------~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~s 305 (321)
T TIGR00946 232 KIKLGVRDAILALIVRFLVQPAVMAGISKLI------GLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLS 305 (321)
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2334557788889999999999997776542 4478889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014489 404 YLVAALALTGWSMV 417 (423)
Q Consensus 404 y~~~~itl~~~~~~ 417 (423)
++++++|+|+|+.+
T Consensus 306 T~ls~~tlp~~~~l 319 (321)
T TIGR00946 306 TVLSLISLPLFIIL 319 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.97 E-value=2.4e-29 Score=249.38 Aligned_cols=302 Identities=17% Similarity=0.205 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGW 91 (423)
Q Consensus 12 ~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~ 91 (423)
..++-+++++++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|...+..++.+...++++|
T Consensus 7 ~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (314)
T PRK09903 7 GDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSW 83 (314)
T ss_pred HHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44666789999999998 999999999999999999999999999999864 666665445556767777777888888
Q ss_pred HHHH-hccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhccccccc
Q 014489 92 IVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (423)
Q Consensus 92 l~~~-~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~ 170 (423)
++.| .+|.+++.++....+++++|++++.+++++++ ||++.. -|+.|..++. +.+++.|++|..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~~-~~~~~~~~~g~~~~~~ 152 (314)
T PRK09903 84 FGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIISI-IVNAITIPIGLYLLNP 152 (314)
T ss_pred HHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHHH-HHHHHHHHHHHHHHcc
Confidence 8875 66777677777888889999999999999999 776411 1555555544 5788999999877653
Q ss_pred chhhHHhhhhcCCCCCCCcccCccccccccccccCCCCCCcccchhhccCCCCCCCCccccccCcccccccchhhhhHhH
Q 014489 171 SSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRS 250 (423)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (423)
.+.+ ++ + +...+
T Consensus 153 ~~~~-----~~-----------------------------------------------------------~-~~~~~--- 164 (314)
T PRK09903 153 SSGA-----DG-----------------------------------------------------------K-KNSNL--- 164 (314)
T ss_pred cccc-----cc-----------------------------------------------------------c-cchHH---
Confidence 2100 00 0 00001
Q ss_pred HHHHHHHHHHhhChhHHHHHHHHHHhchHHHHHhhcCCCCchhhHHHHHHHhcCccchhhhhhhccccccccccCCCCCc
Q 014489 251 LEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPL 330 (423)
Q Consensus 251 ~~~~~~~~~~~~~Pp~ia~i~giivglippL~~~f~~~~~pl~~i~~a~~~lG~a~vPl~llVLGa~La~~~~~s~~~~~ 330 (423)
+...+-+.||+++|.++|+++.+. + -+.+.++.++++++|++++|+.|+.+|++|++...+ .. +
T Consensus 165 ----~~l~~~~~nP~iia~~~gl~~~l~--------~-i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~ 228 (314)
T PRK09903 165 ----SALISAAKEPVVWAPVLATILVLV--------G-VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-A 228 (314)
T ss_pred ----HHHHHHHhchHHHHHHHHHHHHHc--------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-H
Confidence 122456789999999999998431 2 134579999999999999999999999999874332 22 4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Q 014489 331 IIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALA 410 (423)
Q Consensus 331 ~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e~s~~l~~~y~~~~it 410 (423)
......+.|+++.|++...+.... +-|+...-+++++.++|+|.+...+++.|+.+.+..++..+.+++++++|
T Consensus 229 ~~~~~~~~Kli~~P~i~~~~~~~~------~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iT 302 (314)
T PRK09903 229 EIAYNTFLKLILMPLALLLVGMAC------HLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc------CCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 456678899999999886655432 33777888999999999999999999999988888999999999999999
Q ss_pred HHHHHHH
Q 014489 411 LTGWSMV 417 (423)
Q Consensus 411 l~~~~~~ 417 (423)
+|+|+.+
T Consensus 303 lpl~~~l 309 (314)
T PRK09903 303 APLWIYV 309 (314)
T ss_pred HHHHHHH
Confidence 9999986
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.87 E-value=4.4e-05 Score=74.97 Aligned_cols=109 Identities=16% Similarity=0.092 Sum_probs=90.3
Q ss_pred cchhhhhhhccccccccccC-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHH
Q 014489 306 TIPCITLILGGNLIQGLRSS-TLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGT 384 (423)
Q Consensus 306 ~vPl~llVLGa~La~~~~~s-~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~ 384 (423)
.+...++.+|+++....-++ ..++|.+...++.|++++|++...+.+.. +.||.+...+++..|+|+|.+...
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHH
Confidence 36788999999997533222 22446677778899999999997776543 568999999999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 385 MTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 420 (423)
Q Consensus 385 itq~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l~ 420 (423)
+|+.++.+.+........+.+++++++|+|+.++..
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877788888889999999999999998865
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=96.17 E-value=0.015 Score=53.32 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=76.3
Q ss_pred hhhhhhhcccccccc-ccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHH
Q 014489 308 PCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMT 386 (423)
Q Consensus 308 Pl~llVLGa~La~~~-~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~it 386 (423)
-..|+.+|.++.... ++..-++|.++...+..++++|+++..+.+.. +++||-+..-+++..|+|.|...-.+|
T Consensus 5 ~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 5 FLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp HHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHHH
T ss_pred hHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHHH
Confidence 456777777775321 11122356677778899999999999998442 467899999999999999999999999
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 387 QLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 419 (423)
Q Consensus 387 q~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l 419 (423)
.+.+-+..........+.+++++.+|++..++.
T Consensus 80 ~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 80 YLAGGDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 988755555566677899999999999998775
No 8
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.16 E-value=0.11 Score=51.04 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhH-HHHHHHHHHHHHHHHHHHH
Q 014489 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGI 88 (423)
Q Consensus 10 a~~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l-~~lw~ipv~~ll~~~~g~~ 88 (423)
..+ ..-+++-...|..+.+.. +-..+...| ++.+....+. ++++.-++.+. +++ .+.|.+-+..++...+++.
T Consensus 137 ~~~-~~~v~vPl~lG~~~r~~~-p~~~~~~~~-~~~~s~~~l~-liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~~~~ 210 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVKHKL-PQIAKIILK-VGLISVFLLS-VIIAVVGGINV--ENLATIGPLLLLVGILLPLAGFL 210 (286)
T ss_pred HHH-HHHHHHHHHHHHHHHHHh-HHHHHHHHh-CchHHHHHHH-HHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHHHHH
Confidence 344 677888899999886321 111111112 3333332222 33344333332 222 2234444445677788999
Q ss_pred HHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhh
Q 014489 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSY 163 (423)
Q Consensus 89 ~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~ 163 (423)
+||+.+|.+|.+++.|.-+...++..|++ +-+++..+. |++ + ...-...|...+...+..+.+-+
T Consensus 211 ~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 211 LGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888889999999998 666665554 542 2 23235567677777777665443
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.86 E-value=0.041 Score=54.47 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=88.8
Q ss_pred CccchhhhhhhccccccccccC-CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHH
Q 014489 304 DGTIPCITLILGGNLIQGLRSS-TLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 382 (423)
Q Consensus 304 ~a~vPl~llVLGa~La~~~~~s-~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l 382 (423)
...+-+.++..|.+|.+..-.. -.+||.++..++.-++++|++++++.+.. +-||-+.-=+++..|+|...+.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~------~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF------PLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHhHHheeeCCCchhH
Confidence 3456678888999987633333 34567788889999999999999998774 3588888889999999999999
Q ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 383 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 420 (423)
Q Consensus 383 ~~itq~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l~ 420 (423)
..+|.+.+-+-...-..-..+.+++++..|+++.+|+.
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999887555555556668999999999999998764
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.61 E-value=0.13 Score=51.48 Aligned_cols=106 Identities=13% Similarity=-0.021 Sum_probs=80.1
Q ss_pred hhhhhcccccccc-ccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhc
Q 014489 310 ITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQL 388 (423)
Q Consensus 310 ~llVLGa~La~~~-~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~ 388 (423)
+|+.+|.++.... ++.-.++|.+....+.-++++|+++..+.+.. ++.+|-+..=+++..|+|.+.....+|.+
T Consensus 52 mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~l 126 (328)
T TIGR00832 52 MMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQL 126 (328)
T ss_pred HHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5667777775322 22233457788889999999999999887653 25578899999999999999988888888
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 389 FDVAQEECSVLFLWTYLVAALALTGWSMVYMW 420 (423)
Q Consensus 389 ~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l~ 420 (423)
.+-+.......-..+.+++++.+|.++.+|..
T Consensus 127 AkGnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 127 AKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 76554444445568999999999999887764
No 11
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.53 E-value=0.27 Score=48.95 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=83.8
Q ss_pred cCccchhhhhhhcccccccccc-CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHH
Q 014489 303 GDGTIPCITLILGGNLIQGLRS-STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMN 381 (423)
Q Consensus 303 G~a~vPl~llVLGa~La~~~~~-s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~ 381 (423)
....|.+..++-|.+|...--+ .-.++|....+...=+++.|+++..+...... + .|+-+..=+++..|+|+.++
T Consensus 33 ~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~ 108 (313)
T PF13593_consen 33 IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVS 108 (313)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhh
Confidence 3344888999999998642222 23456778888899999999999988877542 2 35568899999999999977
Q ss_pred HH-HHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 382 IG-TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 419 (423)
Q Consensus 382 l~-~itq~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l 419 (423)
.. .+|+..|-.+...-..-..+.++.++..|+|+.+|+
T Consensus 109 S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 109 SSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 74 688776644433333334789999999999999887
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=85.91 E-value=2.3 Score=42.59 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhhcC-----CCCChhHHhhhhhhHHhHHhHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHHHHHH
Q 014489 15 VQVLLISVLGALMATQYW-----NLLTADARRSLNKMVFTVFTPSLMFASLAKTVT--LEEIISWWFMPVNVAMTFLIGG 87 (423)
Q Consensus 15 ~kV~li~~~G~~la~~~~-----gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt--~~~l~~lw~ipv~~ll~~~~g~ 87 (423)
..+++-...|..+.+... +..+++.++.++.+.. +++=..++...+.+-. .++..+.+.+-+..++.+.+++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~ 260 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMF 260 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 445556677776653211 1111233344555443 2333334444443321 1222233333334567788999
Q ss_pred HHHHHHHHhccCCCCCcceeEEEeecCCc
Q 014489 88 ILGWIVVKLLRPKPHLEGLVIATCASGNL 116 (423)
Q Consensus 88 ~~g~l~~~~~~~p~~~r~~~~~a~~f~N~ 116 (423)
.+|++++|.+|.++++|.-+..+++-.|+
T Consensus 261 ~lg~~~~r~~~l~~~~~~a~~~e~g~qN~ 289 (328)
T TIGR00832 261 FLTFALAKKLGLPYSITAPAAFTGASNNF 289 (328)
T ss_pred HHHHHHHHHhCcChhhhhhheehhhhhhH
Confidence 99999999999999999999999999885
No 13
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=83.29 E-value=18 Score=36.01 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChh---HHhhhhhhHHhHHhHHHHHHHhhhccchh---hH--HHHHHHHHHHHHHHH
Q 014489 13 PIVQVLLISVLGALMATQYWNLLTAD---ARRSLNKMVFTVFTPSLMFASLAKTVTLE---EI--ISWWFMPVNVAMTFL 84 (423)
Q Consensus 13 ~v~kV~li~~~G~~la~~~~gil~~~---~~k~lS~l~~~~flP~Lifs~l~~~lt~~---~l--~~lw~ipv~~ll~~~ 84 (423)
=+.++++-..+|-++.. . +.+. .+|.++ ..-...+-.++++++..+...+ ++ .++..+-...+....
T Consensus 163 L~~~vllP~~~Gq~~r~-~---~~~~~~~~~~~~~-~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLRR-W---VPKWVARHKKPLS-LLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 34566777777876641 1 2222 222333 3344555667777776664322 22 223233333444556
Q ss_pred HHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhH
Q 014489 85 IGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (423)
Q Consensus 85 ~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~ 158 (423)
+.+.++|...|.++.++++|.-+..|++ ..+..+-+.+...+ |++.+ .......-+.+|...+.+
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs-~Ksl~~gvpl~~~l-------f~~~~-~~~~~~lP~~iyh~~Ql~ 302 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGS-QKSLALGVPLASIL-------FPGHP-DLGLIVLPLMIYHPLQLF 302 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcC-cCcchhHHHHHHHH-------ccccc-ccchhhhHHHHHHHHHHH
Confidence 6778899999999999988766666644 77777777777777 55422 233444555566654443
No 14
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=81.81 E-value=9.2 Score=38.10 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcc
Q 014489 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLG 117 (423)
Q Consensus 74 ~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~ 117 (423)
.+-+..+++..+|+..||...|.++.+++.|.-...|++-.|++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 34555677788999999999999999999999999999999985
No 15
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=64.32 E-value=22 Score=38.44 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--CChhH--------------HhhhhhhHHhHHhHHHHHHHhhhccc---hhhHH
Q 014489 10 ASMPIVQVLLISVLGALMATQYWNL--LTADA--------------RRSLNKMVFTVFTPSLMFASLAKTVT---LEEII 70 (423)
Q Consensus 10 a~~~v~kV~li~~~G~~la~~~~gi--l~~~~--------------~k~lS~l~~~~flP~Lifs~l~~~lt---~~~l~ 70 (423)
.-+|++-+++++++||++. |.++ ++=-+ .-.+...+-++++=..+ ..++-+.- +++++
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFv-y~vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFI-FAIGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH-HHhhhccCHHHHHHHH
Confidence 4589999999999999998 4333 11110 00122222233332222 22333332 22444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCC-----Chhhhhhh
Q 014489 71 SW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFG-----NRDVCSSV 144 (423)
Q Consensus 71 ~l-w~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg-----~~~~~~~r 144 (423)
+- |..-+.+++...++.++.+.+.++++.+...-.+.. |++..|+-.|--+ .+++.+- +..-. +.+..+..
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~-~~~~~~~~~~~~~~avgY 161 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKL-GLSPEQKTAYQGNVAVAY 161 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhc-CCCcchhhccccccceee
Confidence 42 444555666667788999999999999975555544 3466777777666 4555321 11000 11233556
Q ss_pred hhHHHHHHhhhhhHHh-hhhcccccccchh
Q 014489 145 GLSYASFSMALGGFFI-WSYSYQLIKQSSV 173 (423)
Q Consensus 145 g~aYi~~~~~~~~~~~-ws~g~~ll~~~~~ 173 (423)
+++|.. -+++.++. -...+++++.+.+
T Consensus 162 av~Ypf--Gvig~i~~~~~~~p~l~~~~~~ 189 (562)
T TIGR03802 162 AVTYIF--GTIGVIIVLVNILPWLMGIDLR 189 (562)
T ss_pred ehhhhh--HHHHHHHHHHHHHHHHhCCChH
Confidence 666653 34566643 3345667776544
No 16
>PRK03818 putative transporter; Validated
Probab=62.95 E-value=87 Score=33.81 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=66.8
Q ss_pred CChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeec
Q 014489 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (423)
Q Consensus 35 l~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~l-w~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f 113 (423)
+++.+..-+.++-+.+|+=|.=. +-++++ .+.+++. |...+..++.++++.++++++.++++.+...--+.. |.+-
T Consensus 54 ~~~~~~~~~~~~gl~lFv~~vGl-~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~ 130 (552)
T PRK03818 54 LDSDMLHFIQEFGLILFVYTIGI-QVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLPVMLGIF-SGAV 130 (552)
T ss_pred cChHHHHHHHHHHHHHHHHHHhh-cccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccc
Confidence 45555555666666666544321 222222 2234442 444555677778888999999999999874333322 2233
Q ss_pred CCcchhHHHHHHHHhhcCCCC-CCChhhhhhhhhHHHHHHhhhhhHHhhhhcccccccchhh
Q 014489 114 GNLGNLLLIIVPAICHEQGSP-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSVR 174 (423)
Q Consensus 114 ~N~~~LPl~li~sL~~~~~~~-fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~~~~~ 174 (423)
.|+-.|--+ .+++.+ .+.. -.+++-....+++|.. -+++.++.-.+..++++.+.++
T Consensus 131 T~tp~l~aa-~~~~~~-~~~~~~~~~~~a~gYa~~Yp~--g~i~~il~~~~~~~~~~~~~~~ 188 (552)
T PRK03818 131 TNTPALGAG-QQILRD-LGTPGDLVDQMGMGYAMAYPF--GICGILLSMWLIRLIFRINVDK 188 (552)
T ss_pred cccHHHHHH-HHHHhc-cCCCccccCCcchhhHhHhHH--HHHHHHHHHHHHHHHhCCChHH
Confidence 444444332 223311 1100 0112233555555544 2345554333677777776443
No 17
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=55.10 E-value=71 Score=31.82 Aligned_cols=103 Identities=22% Similarity=0.265 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 014489 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGILGW 91 (423)
Q Consensus 13 ~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~-ipv~~ll~~~~g~~~g~ 91 (423)
+.+.+++-..+|.++. | ++++.++.+++=.- +.+|-.+| .++.+++++++.+.++ ..+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4456888899999886 3 77777776666532 34444433 5899999999998854 44445666677888888
Q ss_pred HHHHhccCCCCCcceeEEEeecCCcchhHHHHH
Q 014489 92 IVVKLLRPKPHLEGLVIATCASGNLGNLLLIIV 124 (423)
Q Consensus 92 l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li 124 (423)
++.|.+|.+++. ....+...||.--=|-++.
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence 889999877633 2222233677766665553
No 18
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=52.04 E-value=74 Score=32.58 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHH----HHHHHHHH
Q 014489 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAM----TFLIGGIL 89 (423)
Q Consensus 14 v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll----~~~~g~~~ 89 (423)
+--++++...|.+++ ..|++|.+....+.+.+...++|.-++==+ -+.+.+++.+.-.=.+..++ .+++|..+
T Consensus 25 l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v 101 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVV 101 (378)
T ss_pred cCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344678888889898 889996666677888888888888777655 56677777666543333333 33445555
Q ss_pred HHHHHHh
Q 014489 90 GWIVVKL 96 (423)
Q Consensus 90 g~l~~~~ 96 (423)
++.+.+.
T Consensus 102 a~~l~~~ 108 (378)
T PF05684_consen 102 AFLLFGG 108 (378)
T ss_pred HHHHHhh
Confidence 5444433
No 19
>PRK04972 putative transporter; Provisional
Probab=48.54 E-value=1e+02 Score=33.27 Aligned_cols=106 Identities=9% Similarity=-0.015 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--------------------CChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHH
Q 014489 12 MPIVQVLLISVLGALMATQYWNL--------------------LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS 71 (423)
Q Consensus 12 ~~v~kV~li~~~G~~la~~~~gi--------------------l~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~ 71 (423)
.|++-+++.++.||++.+ .++ +..+.-..+.++-+.+|+=|.=. +-++++ ++.+++
T Consensus 12 ~~~~~lf~~i~lG~~lG~--i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~-~~Gp~F-~~~l~~ 87 (558)
T PRK04972 12 NYILLLFVVLALGLCLGK--LRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGV-EAGPNF-FSIFFR 87 (558)
T ss_pred CChHHHHHHHHHHHhhhc--eEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhh-hhhHHH-HHHHHH
Confidence 678888899999888873 222 01111111123334444333211 222222 223443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHH
Q 014489 72 W-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (423)
Q Consensus 72 l-w~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~ 122 (423)
- |..-+..++.++++.++++.+.|+++.+...-.+.. |.+..|+-.|--+
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-aGa~T~tp~l~~a 138 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVIALGLGKLFGWDIGLTAGML-AGSMTSTPVLVGA 138 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh-hccccCcHHHHHH
Confidence 2 344455667777888999999999999974443333 3355666555444
No 20
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=43.97 E-value=3e+02 Score=28.32 Aligned_cols=94 Identities=14% Similarity=0.289 Sum_probs=64.6
Q ss_pred cCCCCChhHHhhhhhhH-----HhHHhHHHHHHHhh---hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 014489 31 YWNLLTADARRSLNKMV-----FTVFTPSLMFASLA---KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (423)
Q Consensus 31 ~~gil~~~~~k~lS~l~-----~~~flP~Lifs~l~---~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~p~~ 102 (423)
..|+++++..|..++.- +++|.+||+.-++= +.+=.+.++.+.+ |+ +.....+.+.|.++..+++.+.+
T Consensus 91 ~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~-~i--l~g~v~A~~~g~lVG~~~G~~~~ 167 (438)
T COG3493 91 FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIP-PI--LAGMVGAAAVGILVGLLFGLSFQ 167 (438)
T ss_pred HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhH-HH--HHHHHHHHHHHHHHHHHhCCChH
Confidence 67999999999998874 68999999998762 2233455566533 33 33344466677777777877754
Q ss_pred --CcceeEEEeecCCc-chhHHHHHHHH
Q 014489 103 --LEGLVIATCASGNL-GNLLLIIVPAI 127 (423)
Q Consensus 103 --~r~~~~~a~~f~N~-~~LPl~li~sL 127 (423)
.-+.+++..+=||- |.+|+..+.|=
T Consensus 168 d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 168 DTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 55566666665554 89999988553
No 21
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=42.95 E-value=1.5e+02 Score=30.70 Aligned_cols=88 Identities=11% Similarity=0.243 Sum_probs=54.5
Q ss_pred CChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHH--HHHHHHH-HHHHHhccCCCCCcceeEEEe
Q 014489 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTF--LIGGILG-WIVVKLLRPKPHLEGLVIATC 111 (423)
Q Consensus 35 l~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~--~~g~~~g-~l~~~~~~~p~~~r~~~~~a~ 111 (423)
++++..+.+|.+...+|+=+=+ .++...++.++| +|+.+++.. +...+.. |+..|++ +|++.+-++++.
T Consensus 270 ~~~~~i~~I~~~sLdlfl~~Al-----msL~L~~l~~~a-~Plliil~~q~i~~~l~~~fv~fr~m--g~~ydaaV~~ag 341 (398)
T TIGR00210 270 VAERAVSVIGNVSLSLFLAIAL-----MSLQLWELADLA-GPIALILLVQVMFMALYAIFVTFRLM--GKDYDAAVLCAG 341 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-----HhCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhc--cchHHHHHHhcc
Confidence 5556899999999998875544 468889999986 344333322 2222222 3333433 466777777666
Q ss_pred ecCCc-chhH--HHHHHHHhhc
Q 014489 112 ASGNL-GNLL--LIIVPAICHE 130 (423)
Q Consensus 112 ~f~N~-~~LP--l~li~sL~~~ 130 (423)
-+|-. |.-| ++.++|+|+.
T Consensus 342 ~~G~~lGatptaianm~av~~~ 363 (398)
T TIGR00210 342 HCGFGLGATPTAIANMQAVTER 363 (398)
T ss_pred cccccccchHHHHHHHHHHHhc
Confidence 66543 5555 4567999875
No 22
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=42.04 E-value=83 Score=33.55 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHH------HHH
Q 014489 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLI------GGI 88 (423)
Q Consensus 15 ~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~------g~~ 88 (423)
+.+.+++-.|.-.| .|.|.++.-.+|.+.+.-=...+|..+|.-+-+++-.|--. +-++|+.+.+...+ |.+
T Consensus 91 LG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~asdaGy-Vvl~PL~a~if~a~Gr~PlaGia 168 (508)
T PRK11339 91 LGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISSDAAL-VIMPPMGALIFLAVGRHPVAGLL 168 (508)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHcCCChHHHHH
Confidence 44455555555445 48999999999999999999999999888877666533333 66788877776644 555
Q ss_pred HHHH
Q 014489 89 LGWI 92 (423)
Q Consensus 89 ~g~l 92 (423)
.++.
T Consensus 169 ~~fa 172 (508)
T PRK11339 169 AAIA 172 (508)
T ss_pred HHHH
Confidence 5544
No 23
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=41.95 E-value=3.1e+02 Score=27.90 Aligned_cols=88 Identities=11% Similarity=0.300 Sum_probs=51.8
Q ss_pred CChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhccCCCCCcceeEEEe
Q 014489 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNV--AMTFLIGGILG-WIVVKLLRPKPHLEGLVIATC 111 (423)
Q Consensus 35 l~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~--ll~~~~g~~~g-~l~~~~~~~p~~~r~~~~~a~ 111 (423)
+|+++.+.++.+.+.+|+= ..+ -+++...+.+++ +|+.+ ++.+++-.++. ++..|+++ |++..-++++.
T Consensus 272 id~~~i~~I~~~sL~~fl~----~al-msl~l~~l~~~a-~Plliil~~q~i~~~~f~~fv~fr~~g--kdydaavm~~G 343 (368)
T PF03616_consen 272 IDRKTIDRISGISLDLFLA----MAL-MSLKLWVLADYA-LPLLIILAVQTILMVLFAYFVTFRVMG--KDYDAAVMSAG 343 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH----HHH-HhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhC--CChhHHHHhhh
Confidence 8999999999999998863 333 468999999985 44432 33333333333 23334443 44555555443
Q ss_pred ecC-CcchhH--HHHHHHHhhc
Q 014489 112 ASG-NLGNLL--LIIVPAICHE 130 (423)
Q Consensus 112 ~f~-N~~~LP--l~li~sL~~~ 130 (423)
-.| =.|.-| ++-++|+|+.
T Consensus 344 ~~G~glGatp~a~anm~~v~~~ 365 (368)
T PF03616_consen 344 FCGFGLGATPNAMANMQAVTEK 365 (368)
T ss_pred hhccCCCccHHHHHHHHHHHHh
Confidence 332 134455 4556888764
No 24
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=40.89 E-value=1.4e+02 Score=30.55 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCh-hHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 15 VQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (423)
Q Consensus 15 ~kV~li~~~G~~la~~~~gil~~-~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~ 93 (423)
.-++++..+|...+ ....... .....++....++| |..+|..-+.+++.+-..+.++.++...+-.++-+++
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777665 3333433 55566666666654 7889999999999994445555555566677777888
Q ss_pred HHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhc
Q 014489 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (423)
Q Consensus 94 ~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g 164 (423)
.|++|.|. ....-+.-.|.+--+.+-..+-++ + .+-+.-|+.--.+.-.+|+.+-+..+
T Consensus 314 ~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~a~------~--~~Lv~pgvL~gvlGyaiGty~G~~va 372 (378)
T PF05684_consen 314 GKLFKIDL----FELLVASNANIGGPATAPAVAAAK------G--PSLVPPGVLMGVLGYAIGTYLGLAVA 372 (378)
T ss_pred HHHHCCCH----HHHHHHhhcccCCcchHHHHHHhc------C--CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999986 334444456666666664433332 2 11223455544555555665555444
No 25
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=37.57 E-value=2.3e+02 Score=26.98 Aligned_cols=117 Identities=12% Similarity=0.113 Sum_probs=71.2
Q ss_pred ChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecC
Q 014489 36 TADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASG 114 (423)
Q Consensus 36 ~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw-~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~ 114 (423)
+=|.=..=++....+.=|+-+-=.+--.=..+.++++| ++....++-..+++..++++.|.+..+++ +..+..+
T Consensus 53 ~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~-----~~~Sl~P 127 (230)
T COG1346 53 SYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE-----LILSLLP 127 (230)
T ss_pred CHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHhcc
Confidence 33444444566667777776654444444788999888 55555677778899999999999999973 2234556
Q ss_pred CcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhccccccc
Q 014489 115 NLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (423)
Q Consensus 115 N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~ 170 (423)
-+-.-|+++= +.+. .|..+ +--.++..+..++---.|+.+++.
T Consensus 128 kSvTTpiAm~--vs~~----iGGip-------~ltav~Vi~tGi~Gavlg~~llk~ 170 (230)
T COG1346 128 KSVTTPIAME--VSES----IGGIP-------ALTAVFVILTGILGAVLGPLLLKL 170 (230)
T ss_pred cccccHHHHH--HHHh----cCCch-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677753 2221 34321 111334444555555666655543
No 26
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=37.04 E-value=1.2e+02 Score=30.16 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHH-HHHHHHHHHHHHHHH
Q 014489 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGIL 89 (423)
Q Consensus 11 ~~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~-ipv~~ll~~~~g~~~ 89 (423)
.++.+-+++-..+|.++. =+|+|.||-+++-. .+..|.+-| .++..++++++.+=.. -.+-.++++.++...
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 567788889999999994 49999999998864 566787776 5899999999887652 222234445555555
Q ss_pred HHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHH
Q 014489 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (423)
Q Consensus 90 g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL 127 (423)
.++.-|.++..+ -....-..+..||.-.-|-++-++-
T Consensus 241 ~~~~dr~i~~~~-g~aG~A~sstAGnavatPaaiA~~d 277 (314)
T PF03812_consen 241 LYLADRLILKGN-GVAGAAISSTAGNAVATPAAIAAAD 277 (314)
T ss_pred HHHHHHHHcCCC-CceeehHHhhhhhhhhhhHHHHHhC
Confidence 667777653222 2223444567899999998875443
No 27
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=37.03 E-value=4.7e+02 Score=27.21 Aligned_cols=104 Identities=15% Similarity=0.243 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHhhhhhhH-----HhHHhHHHHHHHhhhccch----hhHHHHHHHHHHHHHHHHHHHH
Q 014489 18 LLISVLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTL----EEIISWWFMPVNVAMTFLIGGI 88 (423)
Q Consensus 18 ~li~~~G~~la~~~~gil~~~~~k~lS~l~-----~~~flP~Lifs~l~~~lt~----~~l~~lw~ipv~~ll~~~~g~~ 88 (423)
+++.+...++. ..|+++++..+.+.+.. .++|.-||+..++ -..+- +...++ +|. .+...+.+.+
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSI-Lgm~RklLika~~r~--~p~-il~g~~~a~~ 136 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSI-LGMNRKLLIKAFARF--IPP-ILGGVIGAFL 136 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhh-hhcCHHHHHHHHHHH--HHH-HHHHHHHHHH
Confidence 44445556666 78999999999998875 5788999998877 33333 344444 333 2344455666
Q ss_pred HHHHHHHhccCCCC--CcceeEEEeecCC-cchhHHHHHHHH
Q 014489 89 LGWIVVKLLRPKPH--LEGLVIATCASGN-LGNLLLIIVPAI 127 (423)
Q Consensus 89 ~g~l~~~~~~~p~~--~r~~~~~a~~f~N-~~~LPl~li~sL 127 (423)
++-++..++..... ..+.+++..+=|| .|.+|++.+.+=
T Consensus 137 ~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~ 178 (414)
T PF03390_consen 137 LGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAE 178 (414)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHH
Confidence 66666677766532 4445666655555 799999987654
No 28
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=36.05 E-value=1.4e+02 Score=30.29 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHhhhhh---hHHhHHhHHHHHHHhh-hccchhhHHHHHHHHHHH-HHHHHH-HHHHH
Q 014489 17 VLLISVLGALMATQYWNLLTADARRSLNK---MVFTVFTPSLMFASLA-KTVTLEEIISWWFMPVNV-AMTFLI-GGILG 90 (423)
Q Consensus 17 V~li~~~G~~la~~~~gil~~~~~k~lS~---l~~~~flP~Lifs~l~-~~lt~~~l~~lw~ipv~~-ll~~~~-g~~~g 90 (423)
-..+...|+++. ..|+++++....-++ .....+++.+++ -++ ...+++++.+..=.|... ++...+ -.+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~-giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMV-GVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345667778776 889999987665444 445556666555 234 346888888864123222 222233 34556
Q ss_pred HHHHHhccCCC
Q 014489 91 WIVVKLLRPKP 101 (423)
Q Consensus 91 ~l~~~~~~~p~ 101 (423)
+++.|+++.=+
T Consensus 284 ~lvGKllG~YP 294 (347)
T TIGR00783 284 AFLGKLMGMYP 294 (347)
T ss_pred HHHHHHhCCCh
Confidence 68888888754
No 29
>PRK05326 potassium/proton antiporter; Reviewed
Probab=33.85 E-value=3.4e+02 Score=29.13 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHH-HHHHHHHH-HHHHHHHHHhccC
Q 014489 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIG-GILGWIVVKLLRP 99 (423)
Q Consensus 22 ~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~-~ll~~~~g-~~~g~l~~~~~~~ 99 (423)
..|.+++ .......+..+...+-.-.++.|. .|..+|-.++++++.+.++.-+. .++...++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4566565 333344444555555556677765 79999999999998876542221 11222222 2223344455666
Q ss_pred CCCCcceeEEEeecCCcchhHHHHH
Q 014489 100 KPHLEGLVIATCASGNLGNLLLIIV 124 (423)
Q Consensus 100 p~~~r~~~~~a~~f~N~~~LPl~li 124 (423)
|.+.+-++--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 65544333332 45777887664
No 30
>COG2855 Predicted membrane protein [Function unknown]
Probab=33.77 E-value=43 Score=33.61 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=61.8
Q ss_pred HhhhccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCC
Q 014489 59 SLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGN 137 (423)
Q Consensus 59 ~l~~~lt~~~l~~lw~ipv~-~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~ 137 (423)
=+|.++|++++.++..=-+- ..+....++++++.+.|.+++|++.--.+ +|+.+=+|+=-++-++.. .+.
T Consensus 78 LlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Li--a~GssICGasAiaA~~pv-------ika 148 (334)
T COG2855 78 LLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLI--AAGSSICGASAIAATAPV-------IKA 148 (334)
T ss_pred HHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH--HccchhhHHHHHHHhCCc-------CCC
Confidence 36889999999999743333 34444668889999999999998554332 223222232222211111 234
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhhhcccccccc
Q 014489 138 RDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (423)
Q Consensus 138 ~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~~ 171 (423)
+|+.+..+++-+.++.++.. +.+..-+.++.-+
T Consensus 149 ~~~eva~aIa~V~lfgtia~-llyP~l~~~l~l~ 181 (334)
T COG2855 149 EEEEVAVAIAVVVLFGTLAM-LLYPLLYPLLGLS 181 (334)
T ss_pred CccccceehhhHHHHHHHHH-HHHHHHHHHhCCC
Confidence 55567778888887777654 4444445555543
No 31
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=77 Score=24.30 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 71 SWWFMPVNVAMTFLIGGILGWIVVK 95 (423)
Q Consensus 71 ~lw~ipv~~ll~~~~g~~~g~l~~~ 95 (423)
++|...+++.++.++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667788888889999988775
No 32
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=32.40 E-value=2.2e+02 Score=29.19 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccC
Q 014489 21 SVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNV-AMTFLIGGILGWIVVKLLRP 99 (423)
Q Consensus 21 ~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~-ll~~~~g~~~g~l~~~~~~~ 99 (423)
...|..++ +...-.++..+++..+...+|.| +-|.++|.+++++.+.+.|...+.. .+....=.+..++..|.++.
T Consensus 250 FlaGl~ls--~~~~~~~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~ 326 (397)
T COG0475 250 FLAGLLLS--ESEYRKHELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGF 326 (397)
T ss_pred HHHHHHhc--ccccchHHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555554 32222268888999998888888 5699999999999999998773333 33333345557788888885
Q ss_pred CC
Q 014489 100 KP 101 (423)
Q Consensus 100 p~ 101 (423)
++
T Consensus 327 ~~ 328 (397)
T COG0475 327 SK 328 (397)
T ss_pred cH
Confidence 54
No 33
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=30.68 E-value=5.9e+02 Score=25.85 Aligned_cols=92 Identities=18% Similarity=0.362 Sum_probs=64.0
Q ss_pred cCCCCChhHHhhhhhh-----HHhHHhHHHHHHHhhhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014489 31 YWNLLTADARRSLNKM-----VFTVFTPSLMFASLAKTVT----LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKP 101 (423)
Q Consensus 31 ~~gil~~~~~k~lS~l-----~~~~flP~Lifs~l~~~lt----~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~p~ 101 (423)
..|+++++..+..++. -.++|.-||+..++ -..+ .+...++ +|. .+...+.+.++|-++..++..+.
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSI-L~m~Rk~Lik~~~r~--~p~-il~g~~~a~~~g~lvG~l~G~~~ 80 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSI-LGMNRKLLLKALMRF--IPP-ALIGMVLAVIVGILVGTLFGLGF 80 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhh-hhccHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHcCCCH
Confidence 5699999999999884 35789999998877 2333 3344455 333 23455556677777777777664
Q ss_pred --CCcceeEEEeecCC-cchhHHHHHHH
Q 014489 102 --HLEGLVIATCASGN-LGNLLLIIVPA 126 (423)
Q Consensus 102 --~~r~~~~~a~~f~N-~~~LPl~li~s 126 (423)
...+.+++..+=|| .|.+|+..+.+
T Consensus 81 ~~~~~~i~lPIm~GG~GaGavPLS~~Y~ 108 (347)
T TIGR00783 81 DHSLMYIVMPIMAGGVGAGIVPLSIIYS 108 (347)
T ss_pred hHhhheeeehhcCCCcccchhhHHHHHH
Confidence 36666777766666 79999998766
No 34
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=29.55 E-value=3.5e+02 Score=27.07 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=43.7
Q ss_pred cCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVK 95 (423)
Q Consensus 31 ~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~ 95 (423)
..|+++ .....++-+-|..+|+.|+--+ -+.+..++..+..=.+.+.+.-.++..+|.++..
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmL-lqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLML-LQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHH-HHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 679995 6667788889999999999877 7888888887765444444444444555555443
No 35
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.24 E-value=80 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014489 73 WFMPVNVAMTFLIGGILGWIVVKLL 97 (423)
Q Consensus 73 w~ipv~~ll~~~~g~~~g~l~~~~~ 97 (423)
+++.+..++++++|+++|+++...-
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888999999877543
No 36
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=29.17 E-value=1.8e+02 Score=22.51 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 014489 82 TFLIGGILGWIVVKLL 97 (423)
Q Consensus 82 ~~~~g~~~g~l~~~~~ 97 (423)
.-+.|...|++..+-.
T Consensus 52 iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 52 IDAVSLTAGFLYAKKM 67 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355777777776543
No 37
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=26.77 E-value=3.7e+02 Score=25.64 Aligned_cols=85 Identities=6% Similarity=0.142 Sum_probs=59.2
Q ss_pred CChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeEEEeec
Q 014489 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (423)
Q Consensus 35 l~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw-~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~a~~f 113 (423)
++-|.=+.=.+....+.-|+-+-=.+=-.=..+.++++| ++-+..++-..++.+.++++.|.+..++ .+..+..
T Consensus 55 i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~-----~~~~Sl~ 129 (232)
T PRK04288 55 ISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN-----AVMASML 129 (232)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----HHHHHHh
Confidence 343444444667777777876644443344678888877 5555556667789999999999999996 4455677
Q ss_pred CCcchhHHHHH
Q 014489 114 GNLGNLLLIIV 124 (423)
Q Consensus 114 ~N~~~LPl~li 124 (423)
+-+-.-|+++-
T Consensus 130 pKSVTtPIAm~ 140 (232)
T PRK04288 130 PQAATTAIALP 140 (232)
T ss_pred hHhhhHHHHHH
Confidence 88888888863
No 38
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=25.92 E-value=79 Score=31.37 Aligned_cols=144 Identities=11% Similarity=0.148 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 014489 14 IVQVLLISVLGALMATQY-WNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFM-PVNVAMTFLIGGILGW 91 (423)
Q Consensus 14 v~kV~li~~~G~~la~~~-~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~i-pv~~ll~~~~g~~~g~ 91 (423)
+-.+.+-..+|.+++ . .--.++..++.+. ..-..+++- =..=+|.+++.+++.++.+- .+...+.......+++
T Consensus 26 l~~~~~AillG~~i~--n~~~~~~~~~~~Gi~-~~~k~~Lr~-gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 26 LGALLIAILLGMLIG--NLFFGLPARFKPGIK-FSSKKLLRL-GIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred ccHHHHHHHHHHHHh--hhccCCcHHHHhHHH-HHHHHHHHH-HHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 334566677788775 2 1123344434433 111122221 22347889999999999873 3334555666778888
Q ss_pred HHH-HhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhccccccc
Q 014489 92 IVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (423)
Q Consensus 92 l~~-~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~ 170 (423)
.+. |.+|+|++..-..-+ +.+=+|.=-++=+.+. ...+|+....+++-+.+|.++.. +.+-+-.+++..
T Consensus 102 ~lg~r~~~l~~~~~~Lia~--GtsICG~SAi~A~a~~-------i~a~~~~~a~ava~V~lfg~vam-~~~P~l~~~l~l 171 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIAA--GTSICGASAIAATAPV-------IKAKEEDVAYAVATVFLFGTVAM-FLYPLLGHALGL 171 (305)
T ss_pred HHHHHHhCCCHHHHHHHHh--hcccchHHHHHHHccc-------ccCCCCceeeeehHHHHHHHHHH-HHHHHHHHHhCC
Confidence 888 999999865433221 2211121111111111 22334445566666666666543 444444445544
Q ss_pred c
Q 014489 171 S 171 (423)
Q Consensus 171 ~ 171 (423)
+
T Consensus 172 ~ 172 (305)
T PF03601_consen 172 S 172 (305)
T ss_pred C
Confidence 4
No 39
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.28 E-value=6.1e+02 Score=25.80 Aligned_cols=106 Identities=22% Similarity=0.341 Sum_probs=54.2
Q ss_pred HHHHhhhccchhhHHHHHH--HHHH--HHHHHHHHHHHHHHHHHhccCCCCCcceeEE----EeecCCcchhHHHHHHHH
Q 014489 56 MFASLAKTVTLEEIISWWF--MPVN--VAMTFLIGGILGWIVVKLLRPKPHLEGLVIA----TCASGNLGNLLLIIVPAI 127 (423)
Q Consensus 56 ifs~l~~~lt~~~l~~lw~--ipv~--~ll~~~~g~~~g~l~~~~~~~p~~~r~~~~~----a~~f~N~~~LPl~li~sL 127 (423)
.|+.++-.-+.+++++-|- .+.+ +.+...+..++|..+.+++..++.+ +.... ..+.|...... +..
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~-Gll~Gsi~f~GGhGTAaa~g----~~f 147 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLF-GLLAGSIGFTGGHGTAAAFG----PTF 147 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH-HHHhccccccCCccHHHHHH----HHH
Confidence 3777777777777777652 1111 1223456888888888888887632 22111 11222222222 111
Q ss_pred hhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhcccccccc
Q 014489 128 CHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (423)
Q Consensus 128 ~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g~~ll~~~ 171 (423)
.+. +| -+++.+-|+++..+....+.++-=-.+-+++|+.
T Consensus 148 e~~----~G-~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 148 EEL----YG-WEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHh----cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 110 22 1346677888877777666554322333344443
No 40
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=25.14 E-value=1.9e+02 Score=28.78 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHH-HHHHHHHHHHHHHHHH
Q 014489 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGIL 89 (423)
Q Consensus 11 ~~~v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw-~ipv~~ll~~~~g~~~ 89 (423)
.++.+-+++-..+|+++. =+|+|-||-+++- ..+..|.+-| .++..++++++.+=. .-.+-.+++..++...
T Consensus 168 ~~~lv~~ilPlliG~ilG-----NLD~~~r~fl~~~-~~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 168 PHVFVGAVLPFLVGFALG-----NLDPELRDFFSKA-VQTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHhccC-CCeeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 456777888889999884 4999999999885 4566777766 589999999886653 3333345556666677
Q ss_pred HHHHHHhccCCCCCcceeEEEeecCCcchhHHHHH
Q 014489 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIV 124 (423)
Q Consensus 90 g~l~~~~~~~p~~~r~~~~~a~~f~N~~~LPl~li 124 (423)
.++.-|++.-.+.. ...-+....+|.-.-|-++-
T Consensus 241 ~~~~dr~~~g~~g~-aG~A~sstAGnAvatPaavA 274 (314)
T TIGR00793 241 LILADKFIGGGDGT-AGIAASSSAGAAVATPVLIA 274 (314)
T ss_pred HHHHHHHhcCCCCc-hhhHHHHHHHHhhhhHHHHH
Confidence 77888877521212 23334446889888887764
No 41
>PRK11677 hypothetical protein; Provisional
Probab=24.34 E-value=87 Score=27.22 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 014489 80 AMTFLIGGILGWIVVKLLRP 99 (423)
Q Consensus 80 ll~~~~g~~~g~l~~~~~~~ 99 (423)
++.+++|.++|+++.|+...
T Consensus 7 ~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 46777899999999997543
No 42
>COG2323 Predicted membrane protein [Function unknown]
Probab=23.33 E-value=2.1e+02 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014489 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (423)
Q Consensus 14 v~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~ 93 (423)
+++.+++.++++++. | --++|++|+|...=|.=.+.+..++.....+.=...|...+.+++..++..+++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777665 3 467899999999999999999999998877765555554444455555566666665
Q ss_pred HHh
Q 014489 94 VKL 96 (423)
Q Consensus 94 ~~~ 96 (423)
.|-
T Consensus 81 ~ks 83 (224)
T COG2323 81 LKS 83 (224)
T ss_pred hcc
Confidence 544
No 43
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=23.18 E-value=1.6e+02 Score=30.19 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHHHHHhccCcchHHHHHHHH-HHHHHHHHH
Q 014489 332 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFL-WTYLVAALA 410 (423)
Q Consensus 332 iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~~itq~~~~~e~e~s~~l~-~~y~~~~it 410 (423)
+....+.+++++|+.++.+-... .+|.+.- -..++..|.+|+---.+.+.....++...+++.- .+.+.+++.
T Consensus 145 ~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~~--ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~ 218 (371)
T KOG2718|consen 145 LALGFVPQYLIMPLLGFLLSKVL----LLPAALA--AGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVIL 218 (371)
T ss_pred eeehHHHHHHHHHHHHHhhhhHh----hCCcccc--ceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHH
Confidence 33345559999999997754222 2343331 4566779999999999999888777777776654 677888888
Q ss_pred HHHHHHHHH
Q 014489 411 LTGWSMVYM 419 (423)
Q Consensus 411 l~~~~~~~l 419 (423)
+|.|...+-
T Consensus 219 ~pl~s~~l~ 227 (371)
T KOG2718|consen 219 TPLLSILLG 227 (371)
T ss_pred HHHHHHhhc
Confidence 888877653
No 44
>PRK01844 hypothetical protein; Provisional
Probab=22.44 E-value=1.5e+02 Score=22.94 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014489 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (423)
Q Consensus 72 lw~ipv~~ll~~~~g~~~g~l~~~~ 96 (423)
.|+..+..++..++|.+.|+.++|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554555567778888888887753
No 45
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.41 E-value=1.1e+02 Score=30.67 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014489 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIV 93 (423)
Q Consensus 15 ~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~l-w~ipv~~ll~~~~g~~~g~l~ 93 (423)
+.+++...+|..+. + ++++-++..++= .++.+|+..|. ++.+++.+++.+- +..++-.+...++...+++..
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 45558899999885 3 777666665554 44499999988 9999999988776 455554444444555557777
Q ss_pred HHhccCCCCCcceeEEEeecCCcchhHHH
Q 014489 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (423)
Q Consensus 94 ~~~~~~p~~~r~~~~~a~~f~N~~~LPl~ 122 (423)
.|+++..+...+.. ...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~a-~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGAA-AGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchHH-HHHHHHHHHHHHHH
Confidence 78886544322222 22345665555544
No 46
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=21.54 E-value=25 Score=38.35 Aligned_cols=95 Identities=18% Similarity=0.355 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-ceeEEEeecCCcchhHHHHHHHHhhcC-CCCCCChhhhhh
Q 014489 66 LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLE-GLVIATCASGNLGNLLLIIVPAICHEQ-GSPFGNRDVCSS 143 (423)
Q Consensus 66 ~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~p~~~r-~~~~~a~~f~N~~~LPl~li~sL~~~~-~~~fg~~~~~~~ 143 (423)
-+++-+||+.. ..+.+.+++...+...+---+.. .+++.||+++=...+|+.++||...+. |. + ...|
T Consensus 438 YKeVP~WWf~~-----ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GL---N--iitE 507 (761)
T KOG2262|consen 438 YKEVPDWWFLA-----ILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGL---N--IITE 507 (761)
T ss_pred hccCcHHHHHH-----HHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccH---H--HHHH
Confidence 45566777643 33445566666666555432322 236677789999999999999997643 22 1 1233
Q ss_pred hhhHHHHHHhhhhhHHhhhhccccccc
Q 014489 144 VGLSYASFSMALGGFFIWSYSYQLIKQ 170 (423)
Q Consensus 144 rg~aYi~~~~~~~~~~~ws~g~~ll~~ 170 (423)
.-..|+.=.-.+.+++.-+|||.-++.
T Consensus 508 ~i~Gy~~PgrPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 508 YIIGYIYPGRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred HHHHhhcCCchHHHHHHHHhchhhHHH
Confidence 445555555578888999999976553
No 47
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=21.27 E-value=2.8e+02 Score=24.34 Aligned_cols=46 Identities=15% Similarity=0.395 Sum_probs=32.5
Q ss_pred HHHHhhhccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014489 56 MFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPKP 101 (423)
Q Consensus 56 ifs~l~~~lt~~~l~~---lw~-ipv~~ll~~~~g~~~g~l~~~~~~~p~ 101 (423)
+=..+|.+++.|++++ +|+ ..+..++...++.+.++++.|..+.+.
T Consensus 56 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 56 IGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 4567888888776555 443 333345555778999999999999885
No 48
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=20.35 E-value=5e+02 Score=27.77 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHHHHHHHHHHHHHH------HHHH
Q 014489 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL------IGGI 88 (423)
Q Consensus 15 ~kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~lw~ipv~~ll~~~------~g~~ 88 (423)
+.+.+++-.|.=.| .|.|+++.-.||.+++.-=.+.+|.++|.-+-+++-.|--. ...+|+.+++... .|..
T Consensus 81 LG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDAg~-Vvl~PL~a~iF~~~GRhPlaGi~ 158 (502)
T PF03806_consen 81 LGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDAGY-VVLPPLAAMIFAAVGRHPLAGIA 158 (502)
T ss_pred HHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccccee-EeHHhhHHHHHHHcCCChHHHHH
Confidence 34445555555445 49999999999999999999999999999998888655432 3357777766663 3666
Q ss_pred HHHHH
Q 014489 89 LGWIV 93 (423)
Q Consensus 89 ~g~l~ 93 (423)
.|+..
T Consensus 159 ~afa~ 163 (502)
T PF03806_consen 159 AAFAG 163 (502)
T ss_pred HHHHH
Confidence 66553
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.14 E-value=1e+02 Score=26.42 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 014489 79 VAMTFLIGGILGWIVVKLLRPK 100 (423)
Q Consensus 79 ~ll~~~~g~~~g~l~~~~~~~p 100 (423)
+++.+++|.++|+++.|+....
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677788999999998876554
Done!