Query 014489
Match_columns 423
No_of_seqs 116 out of 312
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 12:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014489.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014489hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 21.6 40 0.0029 19.2 2.8 28 259-286 5-32 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 10.8 56 0.0041 18.1 1.4 11 269-279 5-15 (30)
3 d1q90r_ f.23.12.1 (R:) ISP sub 5.1 2.7E+02 0.02 16.3 2.8 28 259-286 10-37 (39)
4 d1lghb_ f.3.1.1 (B:) Light-har 5.1 3.5E+02 0.026 16.2 5.2 38 62-99 4-41 (43)
5 d1jo5a_ f.3.1.1 (A:) Light-har 5.0 3.7E+02 0.027 16.5 3.6 38 62-99 9-46 (48)
6 d1jb0m_ f.23.19.1 (M:) Subunit 5.0 1.9E+02 0.014 15.8 1.9 15 269-283 8-22 (31)
7 d1tm9a_ a.225.1.1 (A:) Hypothe 4.2 2.9E+02 0.021 19.8 3.0 19 344-362 94-112 (137)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 3.7 3.4E+02 0.025 14.4 2.2 21 145-165 3-23 (30)
9 d1g8fa3 c.37.1.15 (A:390-511) 2.5 5.2E+02 0.038 18.9 3.0 30 100-129 1-32 (122)
10 d2q66a1 a.160.1.1 (A:202-351) 2.3 5.8E+02 0.042 19.2 3.3 27 378-404 35-62 (150)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.55 E-value=40 Score=19.16 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.1
Q ss_pred HHhhChhHHHHHHHHHHhchHHHHHhhc
Q 014489 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (423)
Q Consensus 259 ~~~~~Pp~ia~i~giivglippL~~~f~ 286 (423)
++|||=-+.+.+-|..+|..-|+-+.|.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 6788888999999999998888877764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.80 E-value=56 Score=18.08 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=7.8
Q ss_pred HHHHHHHhchH
Q 014489 269 AIVGFIFGAVV 279 (423)
Q Consensus 269 ~i~giivglip 279 (423)
.+.|++.|+||
T Consensus 5 ll~GivlGlip 15 (30)
T d1q90g_ 5 LLCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHhhHH
Confidence 35677778877
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.07 E-value=2.7e+02 Score=16.32 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=20.5
Q ss_pred HHhhChhHHHHHHHHHHhchHHHHHhhc
Q 014489 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (423)
Q Consensus 259 ~~~~~Pp~ia~i~giivglippL~~~f~ 286 (423)
+++||=-+.+++.+-..|+.-|.-..|+
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 5677777888888887777766666654
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.06 E-value=3.5e+02 Score=16.17 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=26.7
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 014489 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (423)
Q Consensus 62 ~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~ 99 (423)
+.+|.++.+|+--+-+.....+..-++++-++..+.|+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677778887766666666666666777777777664
No 5
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.03 E-value=3.7e+02 Score=16.46 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=25.1
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 014489 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (423)
Q Consensus 62 ~~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~ 99 (423)
+-+|.++.+|+--+-+.....+..-++++-++..+.|+
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34677777777666665555666666677777777664
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=4.99 E-value=1.9e+02 Score=15.85 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.7
Q ss_pred HHHHHHHhchHHHHH
Q 014489 269 AIVGFIFGAVVWLRN 283 (423)
Q Consensus 269 ~i~giivglippL~~ 283 (423)
..++++|+++|-+-.
T Consensus 8 v~valvial~pg~la 22 (31)
T d1jb0m_ 8 VYVALVIALLPAVLA 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777776544
No 7
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.24 E-value=2.9e+02 Score=19.79 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 014489 344 PFIGVWVVKAAAALGFLPS 362 (423)
Q Consensus 344 P~igi~iv~~~~~~~~~~~ 362 (423)
|+|..-+.|.+++.|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 5566667788999999885
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.71 E-value=3.4e+02 Score=14.45 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=14.4
Q ss_pred hhHHHHHHhhhhhHHhhhhcc
Q 014489 145 GLSYASFSMALGGFFIWSYSY 165 (423)
Q Consensus 145 g~aYi~~~~~~~~~~~ws~g~ 165 (423)
..+|+.+|.-+-.++.+..=+
T Consensus 3 ~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHHHh
Confidence 468988888766666665543
No 9
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.51 E-value=5.2e+02 Score=18.87 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCCcceeEEEeecCCcc--hhHHHHHHHHhh
Q 014489 100 KPHLEGLVIATCASGNLG--NLLLIIVPAICH 129 (423)
Q Consensus 100 p~~~r~~~~~a~~f~N~~--~LPl~li~sL~~ 129 (423)
|++.++|++...+..|+| .|-.+|...|-+
T Consensus 1 Pr~kqgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 1 PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 788899999999999997 788888888865
No 10
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.34 E-value=5.8e+02 Score=19.21 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=16.0
Q ss_pred hHHHHHHHHhccCcc-hHHHHHHHHHHH
Q 014489 378 PAMNIGTMTQLFDVA-QEECSVLFLWTY 404 (423)
Q Consensus 378 pA~~l~~itq~~~~~-e~e~s~~l~~~y 404 (423)
=||.++-+||+|++. ...+..-+|-.|
T Consensus 35 waILvArvCql~p~a~~~~ll~~FF~~y 62 (150)
T d2q66a1 35 WAMLVARICQLYPNACSAVILNRFFIIL 62 (150)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356667778888754 333444455544
Done!