Query 014491
Match_columns 423
No_of_seqs 108 out of 790
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 05:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00458 acyl CoA binding prot 100.0 2.5E-29 5.4E-34 207.3 10.3 87 317-406 3-89 (90)
2 cd00435 ACBP Acyl CoA binding 100.0 6.3E-29 1.4E-33 201.4 9.3 85 315-404 1-85 (85)
3 PF00887 ACBP: Acyl CoA bindin 100.0 4.1E-29 8.8E-34 199.7 7.9 86 315-403 1-86 (87)
4 KOG0817 Acyl-CoA-binding prote 99.9 1.4E-26 3E-31 204.7 9.3 92 312-408 2-93 (142)
5 COG4281 ACB Acyl-CoA-binding p 99.9 3.3E-22 7.2E-27 164.5 7.9 84 315-403 2-85 (87)
6 KOG3878 Protein involved in ma 99.1 3.2E-10 6.8E-15 114.0 7.7 97 311-409 28-127 (469)
7 smart00295 B41 Band 4.1 homolo 96.7 0.0077 1.7E-07 52.3 7.7 86 314-405 98-204 (207)
8 PF00373 FERM_M: FERM central 95.4 0.12 2.5E-06 41.9 8.5 86 313-404 9-122 (126)
9 KOG3530 FERM domain protein EH 73.8 7.1 0.00015 43.0 6.1 63 337-399 121-195 (616)
10 PF06716 DUF1201: Protein of u 33.1 49 0.0011 26.3 2.9 23 1-23 1-23 (54)
11 PF04434 SWIM: SWIM zinc finge 28.3 34 0.00073 23.8 1.2 23 29-51 11-34 (40)
12 PRK04387 hypothetical protein; 26.5 4.1E+02 0.0088 23.2 7.6 72 301-390 5-76 (90)
13 PF13988 DUF4225: Protein of u 23.6 65 0.0014 30.2 2.5 63 311-380 98-163 (168)
14 PF08020 DUF1706: Protein of u 22.5 5.7E+02 0.012 23.8 8.3 88 313-400 12-116 (166)
15 KOG3529 Radixin, moesin and re 21.1 1.7E+02 0.0037 32.4 5.4 81 313-398 105-206 (596)
16 PTZ00474 tryptophan/threonine- 20.5 1.1E+02 0.0024 31.4 3.6 34 5-38 32-65 (316)
No 1
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=2.5e-29 Score=207.32 Aligned_cols=87 Identities=29% Similarity=0.547 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014491 317 RLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVTIL 396 (423)
Q Consensus 317 ErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKALKGMSKEEAMrKYIELV 396 (423)
+.|++|+.+|+.++..+ .++++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||++||++|
T Consensus 3 ~~F~~A~~~v~~~~~~~---~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~ 79 (90)
T PTZ00458 3 DLFEECVSFINSLPKTV---NLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIV 79 (90)
T ss_pred HHHHHHHHHHHhCCCCC---CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56999999999988643 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcccc
Q 014491 397 SRSIPGCIQD 406 (423)
Q Consensus 397 EELlP~W~a~ 406 (423)
+++.|.|...
T Consensus 80 ~~l~~~w~~~ 89 (90)
T PTZ00458 80 TELFPNWEKG 89 (90)
T ss_pred HHHhhccccC
Confidence 9999999764
No 2
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.96 E-value=6.3e-29 Score=201.36 Aligned_cols=85 Identities=34% Similarity=0.542 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 014491 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT 394 (423)
Q Consensus 315 LEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKALKGMSKEEAMrKYIE 394 (423)
|++.|++|+.+|++++. .|+++++|+|||||||||+|||+.++|++||+++|+||+||++++|||+++||+.||+
T Consensus 1 ~~~~F~~A~~~v~~~~~-----~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~ 75 (85)
T cd00435 1 LQEEFEAAAEKVKKLKT-----KPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIA 75 (85)
T ss_pred ChHHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46789999999999874 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCcc
Q 014491 395 ILSRSIPGCI 404 (423)
Q Consensus 395 LVEELlP~W~ 404 (423)
++++++|.|.
T Consensus 76 ~~~~l~~~~~ 85 (85)
T cd00435 76 KVEELIAKYA 85 (85)
T ss_pred HHHHHhhccC
Confidence 9999999983
No 3
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.96 E-value=4.1e-29 Score=199.70 Aligned_cols=86 Identities=42% Similarity=0.713 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 014491 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT 394 (423)
Q Consensus 315 LEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKALKGMSKEEAMrKYIE 394 (423)
|+++|+.|+.+|+.++.. ..++++++|+|||||||||+|||+.++|+++|+++|+||+||++++|||+++||++||+
T Consensus 1 Le~~F~~A~~~v~~~~~~---~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~ 77 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKK---SQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIE 77 (87)
T ss_dssp HHHHHHHHHHHHHHSSSC---STS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccc---CCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 789999999999999864 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCc
Q 014491 395 ILSRSIPGC 403 (423)
Q Consensus 395 LVEELlP~W 403 (423)
++++++|.|
T Consensus 78 ~v~~~~~~~ 86 (87)
T PF00887_consen 78 LVEELIPKY 86 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999987
No 4
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=204.74 Aligned_cols=92 Identities=37% Similarity=0.572 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhcCCCCHHHHHHH
Q 014491 312 RTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQ 391 (423)
Q Consensus 312 sdeLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKALKGMSKEEAMrK 391 (423)
...+...|.+|+..++++++ .|+++++|+|||||||||+|||++++||+||+++|+||+||++++|||+++||+.
T Consensus 2 ~~~~~~~Fe~a~~~~~~l~~-----~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~ 76 (142)
T KOG0817|consen 2 AATLEAKFEAAAEAVKNLKK-----KPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEA 76 (142)
T ss_pred cchHHHHHHHHHHHHHhccc-----CCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34678899999999999986 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcccchh
Q 014491 392 YVTILSRSIPGCIQDGI 408 (423)
Q Consensus 392 YIELVEELlP~W~a~~t 408 (423)
||+++.+++|.|.+...
T Consensus 77 Yv~~~~~l~~~~~~~~~ 93 (142)
T KOG0817|consen 77 YVEKVEELIPKYGAEAE 93 (142)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 99999999999976543
No 5
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.87 E-value=3.3e-22 Score=164.46 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhcCCCCHHHHHHHHHH
Q 014491 315 LERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQLGNMTPEIAMEQYVT 394 (423)
Q Consensus 315 LEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKALKGMSKEEAMrKYIE 394 (423)
+..+|+.|...|+.|+. .|++++.|+|||||||+++||.+..+||+||+++|+||+||..|+|.|+++|.++||.
T Consensus 2 ~s~~Feqa~~dV~~L~~-----kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYia 76 (87)
T COG4281 2 LSTRFEQAQTDVKELSE-----KPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIA 76 (87)
T ss_pred hhhHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHH
Confidence 56789999999999986 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCc
Q 014491 395 ILSRSIPGC 403 (423)
Q Consensus 395 LVEELlP~W 403 (423)
+|+++...+
T Consensus 77 lVeeLkak~ 85 (87)
T COG4281 77 LVEELKAKY 85 (87)
T ss_pred HHHHHHhhc
Confidence 999998665
No 6
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.2e-10 Score=113.98 Aligned_cols=97 Identities=25% Similarity=0.378 Sum_probs=86.9
Q ss_pred ccchHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCC---CCCCCccHhhHHHHHHHHhcCCCCHHH
Q 014491 311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCRE---PQPMALKVSARANWNAWKQLGNMTPEI 387 (423)
Q Consensus 311 esdeLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNt---PRPG~fD~vgRaKWnAWKALKGMSKEE 387 (423)
-+.+|++.+..|+.|++.. .|....++.+++|+|-||.||+..||.++ |.-|++|+.|+.+..+|..||.||+++
T Consensus 28 wGf~LeElY~LA~~fyKe~--~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~ 105 (469)
T KOG3878|consen 28 WGFPLEELYRLAFTFYKEN--SGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQ 105 (469)
T ss_pred hCCCHHHHHHHHHHHHHhc--cCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHHH
Confidence 3668999999999999954 46667899999999999999999999997 344799999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcccchhh
Q 014491 388 AMEQYVTILSRSIPGCIQDGIG 409 (423)
Q Consensus 388 AMrKYIELVEELlP~W~a~~ts 409 (423)
||..||.+|+++++.|++.-.+
T Consensus 106 AM~~FV~Lldr~C~~F~~yia~ 127 (469)
T KOG3878|consen 106 AMEGFVDLLDRMCSAFRPYIAA 127 (469)
T ss_pred HHHHHHHHHHhcchhhhhHHHH
Confidence 9999999999999998765544
No 7
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=96.68 E-value=0.0077 Score=52.26 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCC-------------CC-CccH-------hhHH
Q 014491 314 ELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ-------------PM-ALKV-------SARA 372 (423)
Q Consensus 314 eLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPR-------------PG-~fD~-------vgRa 372 (423)
.+.--|..+...+..- . ...+.++.+.|-||.-|+..|+++.+. |. ..+. ....
T Consensus 98 ~~~~ly~Q~~~di~~g----~-~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 172 (207)
T smart00295 98 RLNLLYLQVRNDILEG----R-LPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRER 172 (207)
T ss_pred HHHHHHHHHHHHHHcC----c-cCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHH
Confidence 3555677777776542 2 256799999999999999999998532 11 1111 1122
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhccCccc
Q 014491 373 NWNAWKQLGNMTPEIAMEQYVTILSRSIPGCIQ 405 (423)
Q Consensus 373 KWnAWKALKGMSKEEAMrKYIELVEELlP~W~a 405 (423)
=.++|+++.|||+.+||.+||+++.++ |.|..
T Consensus 173 i~~~~~~~~~~s~~~a~~~yl~~~~~l-p~fG~ 204 (207)
T smart00295 173 IVSLHKELIGLSPEEAKLKYLELAEKL-PTYGV 204 (207)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhccc-cccCc
Confidence 248999999999999999999999987 87754
No 8
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=95.42 E-value=0.12 Score=41.92 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCC---CCC-------------cc-------Hh
Q 014491 313 TELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQ---PMA-------------LK-------VS 369 (423)
Q Consensus 313 deLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPR---PG~-------------fD-------~v 369 (423)
..+.--|..+...|-. |. ...+.++.++|-||.-|+..||++.+. .+. +. ..
T Consensus 9 ~~~~lly~Q~~~~vl~----g~-~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~ 83 (126)
T PF00373_consen 9 ITRHLLYLQARRDVLQ----GR-LPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKM 83 (126)
T ss_dssp HHHHHHHHHHHHHHHT----TS-STS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHc----Cc-CCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhh
Confidence 3555667777777643 32 268899999999999999999998321 111 11 01
Q ss_pred hHHHH-----HHHHhcCCCCHHHHHHHHHHHHHhhccCcc
Q 014491 370 ARANW-----NAWKQLGNMTPEIAMEQYVTILSRSIPGCI 404 (423)
Q Consensus 370 gRaKW-----nAWKALKGMSKEEAMrKYIELVEELlP~W~ 404 (423)
....| ..|+++.|||+.+||..||+++.+ +|.|.
T Consensus 84 ~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~-~p~yG 122 (126)
T PF00373_consen 84 KQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQS-LPTYG 122 (126)
T ss_dssp THHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCT-STTTT
T ss_pred hHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhc-CCCCC
Confidence 22223 889999999999999999999987 46664
No 9
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=73.85 E-value=7.1 Score=43.00 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=49.9
Q ss_pred CCChhhHHHHHHhhhccccCCCCCCC--CCC---ccH-------hhHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 014491 337 SIGSDVKMQLYGLHKIATVGPCREPQ--PMA---LKV-------SARANWNAWKQLGNMTPEIAMEQYVTILSRS 399 (423)
Q Consensus 337 qpS~DdKLeLYALYKQATvGDCNtPR--PG~---fD~-------vgRaKWnAWKALKGMSKEEAMrKYIELVEEL 399 (423)
+.+.+...+|=||==|+-.|||+.++ |+. |.+ -+..=.+-||.++|+++.+|+-.|+..+.-+
T Consensus 121 ~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwL 195 (616)
T KOG3530|consen 121 YCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWL 195 (616)
T ss_pred CCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhh
Confidence 57899999999999999999999853 332 221 1233368999999999999999999998744
No 10
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=33.09 E-value=49 Score=26.27 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=17.9
Q ss_pred CcchhhhhhhHHHHHHHHHHHHH
Q 014491 1 MEVFLEFVLPIAFSLIFSFFLAK 23 (423)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (423)
|.-.|.-.||.+|.+++.|||+-
T Consensus 1 MDCvLRs~L~~~F~~lIC~Fl~~ 23 (54)
T PF06716_consen 1 MDCVLRSYLLLAFGFLICLFLFC 23 (54)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 55567778999999988887764
No 11
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=28.28 E-value=34 Score=23.80 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=17.8
Q ss_pred CCCCCCccccccc-CCcchhhhhh
Q 014491 29 SSPSTNCDCDLVS-GLKPCKHFIQ 51 (423)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~ 51 (423)
+.....|+|.--. .-.||+|-+-
T Consensus 11 ~~~~~~CsC~~~~~~~~~CkHi~a 34 (40)
T PF04434_consen 11 SIEQASCSCPYFQFRGGPCKHIVA 34 (40)
T ss_pred cccccEeeCCCccccCCcchhHHH
Confidence 4457789998765 7789999874
No 12
>PRK04387 hypothetical protein; Provisional
Probab=26.48 E-value=4.1e+02 Score=23.18 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=48.8
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccHhhHHHHHHHHhc
Q 014491 301 FDEDDDWEGIERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKVSARANWNAWKQL 380 (423)
Q Consensus 301 ~g~d~DwEg~esdeLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~vgRaKWnAWKAL 380 (423)
=|.|-||+-.+.-.+-.=|.+.-..+.. .+..++.|..|--|||.- |+ ....+.=.....+.
T Consensus 5 YPld~dWsteEii~Vi~F~~~VE~aYE~--------gv~re~ll~~Y~~FK~VV--------ps--K~EEKql~reFe~~ 66 (90)
T PRK04387 5 YPLDLDWSTEEMISVLHFFNAVEKAYEK--------GVDAEELLDAYRRFKEIV--------PS--KAEEKQIDREFEKV 66 (90)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHhc--------CC--hHHHHHHHHHHHHH
Confidence 3678899888777777666655555542 367999999999999987 54 22233334556666
Q ss_pred CCCCHHHHHH
Q 014491 381 GNMTPEIAME 390 (423)
Q Consensus 381 KGMSKEEAMr 390 (423)
.|.|.=.+++
T Consensus 67 SGYS~Y~~Vk 76 (90)
T PRK04387 67 SGYSIYRAVQ 76 (90)
T ss_pred cCCcHHHHHH
Confidence 7777655544
No 13
>PF13988 DUF4225: Protein of unknown function (DUF4225)
Probab=23.59 E-value=65 Score=30.16 Aligned_cols=63 Identities=16% Similarity=0.340 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHHHHhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCCCCCCccH---hhHHHHHHHHhc
Q 014491 311 ERTELERLFGAAVAFVGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREPQPMALKV---SARANWNAWKQL 380 (423)
Q Consensus 311 esdeLEErFkaAVefVKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtPRPG~fD~---vgRaKWnAWKAL 380 (423)
....+.+.+..+++++...++.|.+..-.-|--+.+|+.|+... +|..|.+ ....-+..|+..
T Consensus 98 ~~G~~r~gy~~~A~~mG~~~~~g~~aY~~vdl~~S~yg~~~l~l-------kp~~wRLfryi~~Dy~rk~~~m 163 (168)
T PF13988_consen 98 SQGPVRDGYRQAAKFMGFSEKTGDLAYNAVDLALSVYGIFGLVL-------KPDAWRLFRYIPSDYYRKVKTM 163 (168)
T ss_pred CcchHHHHHHHHHHHcCCCchhhHHHHhhhhhhhhhhhhhcccc-------CCCcchhHhhccHHHHHHHHhc
Confidence 45689999999999998888777665667888899999999884 5765544 444445555543
No 14
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=22.47 E-value=5.7e+02 Score=23.82 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHhcccCCC--------CCCCCChhhHHHHHHhhhc-------cccCCCCC-CCCC-CccHhhHHHHH
Q 014491 313 TELERLFGAAVAFVGNKCNAG--------RISSIGSDVKMQLYGLHKI-------ATVGPCRE-PQPM-ALKVSARANWN 375 (423)
Q Consensus 313 deLEErFkaAVefVKsLPk~G--------~isqpS~DdKLeLYALYKQ-------ATvGDCNt-PRPG-~fD~vgRaKWn 375 (423)
..++..|.+....+..+|... ....-..|....||+.-.. ...|.... |.|| -|+-.+..-..
T Consensus 12 ~ai~~~~~kL~~~~~~ipee~~~~~~~~~~~d~~~~DvLayl~gW~~LlL~W~~~~~~G~~~~fp~~gykWn~lg~Ln~~ 91 (166)
T PF08020_consen 12 EAIEKNYEKLISEIDSIPEEQKDTPFDFGGRDRNPRDVLAYLYGWHELLLKWEEDEQAGEEVDFPAPGYKWNQLGELNQS 91 (166)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhcCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCChhhhhHHHHH
Confidence 457788888888888777411 1112234556688876554 44564433 5555 58888888899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhc
Q 014491 376 AWKQLGNMTPEIAMEQYVTILSRSI 400 (423)
Q Consensus 376 AWKALKGMSKEEAMrKYIELVEELl 400 (423)
=|.+..++|-++++..+-+-..+++
T Consensus 92 f~~~y~~~sl~e~~~~l~~s~~~v~ 116 (166)
T PF08020_consen 92 FYEKYQDTSLEELKALLKESHQKVI 116 (166)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998877665443
No 15
>KOG3529 consensus Radixin, moesin and related proteins of the ERM family [General function prediction only]
Probab=21.05 E-value=1.7e+02 Score=32.43 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHH-HhcccCCCCCCCCChhhHHHHHHhhhccccCCCCCC--CCCCcc------------H-hhHHHH--
Q 014491 313 TELERLFGAAVAF-VGNKCNAGRISSIGSDVKMQLYGLHKIATVGPCREP--QPMALK------------V-SARANW-- 374 (423)
Q Consensus 313 deLEErFkaAVef-VKsLPk~G~isqpS~DdKLeLYALYKQATvGDCNtP--RPG~fD------------~-vgRaKW-- 374 (423)
+.+...|-.+++- +=... ...++++...|=+|--||.+||++.. +.+.++ . ....+|
T Consensus 105 ~~t~~Lffl~vk~~il~~~-----i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ 179 (596)
T KOG3529|consen 105 DITQHLFFLQVKEAILSDE-----IYCPPETSVLLASYAVQAKYGDYDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWED 179 (596)
T ss_pred HHHHHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHHHHHhccccchhhhhhccccCcccchhhhhhccccHHHHHH
Confidence 3444566554443 32222 25789999999999999999998731 111110 0 123334
Q ss_pred ---HHHHhcCCCCHHHHHHHHHHHHHh
Q 014491 375 ---NAWKQLGNMTPEIAMEQYVTILSR 398 (423)
Q Consensus 375 ---nAWKALKGMSKEEAMrKYIELVEE 398 (423)
.=|....||.+++||-.|..++..
T Consensus 180 ri~~~~~~~~~~~re~a~leylki~qd 206 (596)
T KOG3529|consen 180 RIKEWYAEHRGMTREEAMLEYLKIAQD 206 (596)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 346778999999999999999987
No 16
>PTZ00474 tryptophan/threonine-rich antigen superfamily; Provisional
Probab=20.48 E-value=1.1e+02 Score=31.37 Aligned_cols=34 Identities=26% Similarity=0.146 Sum_probs=23.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcccCCCCCCcccc
Q 014491 5 LEFVLPIAFSLIFSFFLAKLFSLSSSPSTNCDCD 38 (423)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (423)
..|.++..+++||++..|-+++.|++++.+=.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (316)
T PTZ00474 32 STSTLSRLTILIFALSCAFFVNTASGASTNRPNK 65 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4555566677778877788888887777664444
Done!