BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014493
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 231/421 (54%), Gaps = 7/421 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFY 118
L +RGK GLV +NL L +++K LG+E + + G H+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVXXXXXXXXXXXXEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI + E+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+ + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 416 I 416
+
Sbjct: 419 L 419
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 169/421 (40%), Positives = 231/421 (54%), Gaps = 7/421 (1%)
Query: 1 MARKKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPD 60
M+ K I E K LL + S + K A+V T++ L Q PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 61 MLFGKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFY 118
L +RGK GLV +NL L +++K LG+E + + G H+ EEFY
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 119 LNIVSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGE 177
+ I + R G V F GG+++ + K + + V L E L+ P + +
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEI 180
Query: 178 IQEFIKSVXXXXXXXXXXXXEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPL 237
+ FI + E+NP + Y LD+ ++D TA + KWG+IEFP
Sbjct: 181 LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPP 240
Query: 238 PFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASE 297
PFGR E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG +E
Sbjct: 241 PFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNE 300
Query: 298 LGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGII 355
L NY EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI+
Sbjct: 301 LANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIV 358
Query: 356 QXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 415
+ + ++VRRGGPNYQ GL M + + G+PI V+G E MT I A
Sbjct: 359 RAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
Query: 416 I 416
+
Sbjct: 419 L 419
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/418 (39%), Positives = 226/418 (54%), Gaps = 7/418 (1%)
Query: 4 KKIREYDSKRLLKEHFQRLSGRELPIKSAQVIESTNFDELAQKEPWLTSCKLVVKPDMLF 63
K I E K LL + S + K A+V T++ L Q PWL S LVVKPD L
Sbjct: 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLI 63
Query: 64 GKRGKSGLVALNLDLAQAATFVKECLGKEMEMSECKGXXXXXXXXXXXXHN--EEFYLNI 121
+RGK GLV +NL L +++K LG+E + + G H+ EEFY+ I
Sbjct: 64 KRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCI 123
Query: 122 VSERLGCSVSFSECGGIEIEENWDKVKTIFVPTGACLASE-TSAPLVATLPLEIRGEIQE 180
+ R G V F GG+++ + K + + V L E L+ P + + +
Sbjct: 124 YATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIKKHLLVHAPEDKKEILAS 183
Query: 181 FIKSVXXXXXXXXXXXXEMNPFTLVDRKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFG 240
FI + E+NP + Y LD+ ++D TA + KWG+IEFP PFG
Sbjct: 184 FISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKVDATADYICKVKWGDIEFPPPFG 243
Query: 241 RAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN 300
R E++I DLD K+ ASLK T+LNPKGRIWT VAGGGASV+Y+DT+ DLG +EL N
Sbjct: 244 REAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTICDLGGVNELAN 303
Query: 301 YAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQXX 358
Y EYSGAP+E + YA+ ++ T + PDG + L+IGG IANFT+VAATF GI++
Sbjct: 304 YGEYSGAPSEQQTYDYAKTILSLXTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAI 361
Query: 359 XXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 416
+ ++VRRGGPNYQ GL + + G+PI V+G E T I A+
Sbjct: 362 RDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGEVGKTTGIPIHVFGTETHXTAIVGXAL 419
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 309 NEGEVLQYARVVIDCATADPDGRKRALVIGGGIA 342
NE L+Y V+ID P KR L++G GIA
Sbjct: 22 NEDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,414,226
Number of Sequences: 62578
Number of extensions: 436390
Number of successful extensions: 922
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 8
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)