BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014494
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 144/242 (59%), Gaps = 27/242 (11%)
Query: 160 IAELTKQGQRVIIAYGGEGGLGNVCCXXXXXXXXXXXXXXYKNGPSDPKLASDDQSSLVA 219
IA+LT+ GQR +IA GG GG GN P+ P+L+ +
Sbjct: 104 IADLTEHGQRAVIARGGRGGRGNSRFATPA-------------NPA-PQLSEN------- 142
Query: 220 GEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF 279
GEPG E ++LELK +ADVGLVG PS GKSTLL +S AKP + Y FTTL PNLG +
Sbjct: 143 GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVET 202
Query: 280 DDIQITV-ADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQL 338
DD + V AD+PGLI+GAH+ GLGH FLRHIERT+V+ +V+D SGL+GR P+
Sbjct: 203 DDGRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVID-XSGLEGR---DPYDDY 258
Query: 339 RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEEL-ERRVQGVPIYPVCAVLEEGVP 397
+ EL + L++RP ++VANK D A E E E+ P++P+ AV EG+
Sbjct: 259 LTINQELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKLTDDYPVFPISAVTREGLR 318
Query: 398 EL 399
EL
Sbjct: 319 EL 320
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 27 SVWDFRSLQHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVI 69
++ DFR + H +A +G HG KN G +D V+ VP GTV+
Sbjct: 54 TLXDFR-YKKHFKAIRGEHGXSKNQHGRNADDXVIKVPPGTVV 95
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 119/194 (61%), Gaps = 14/194 (7%)
Query: 219 AGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMN 278
AGE G + L LEL IADVGLVG P+AGKS+LL A++RA P + Y FTTL PNLG +
Sbjct: 141 AGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE 200
Query: 279 F-DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQ 337
++ + T+ADIPG+I+GA E +GLG FLRHI RT+VL YV+D A +P K
Sbjct: 201 VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--------EPLKT 252
Query: 338 LRDLIIELEHHQEGLSDRPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEE 394
L L E+ + L RPSLV NK+D E+ + + + L R +G+ + PV A+
Sbjct: 253 LETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR--EGLAVLPVSALTGA 310
Query: 395 GVPELKVGLRMLVN 408
G+P LK L LV
Sbjct: 311 GLPALKEALHALVR 324
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----IQITVA----- 287
VG+VG+P+ GKSTL A++RA +Y F T+ N+G + +D +Q T A
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 288 -----------DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320
DI GL+KGAH+ GLG+ FL HI +A+V+
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 21/104 (20%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----IQITVA----- 287
VG+VG+P+ GKSTL A++RA +Y F T+ N+G + +D +Q T A
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 288 -----------DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320
DI GL+KGAH+ GLG+ FL HI +A+V+
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294
+A VG VG PS GKSTLL ++ + Y FTTL G + + +I + D+PG+I
Sbjct: 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVV 320
GA + RG G + + RT L +++
Sbjct: 132 GAKDGRGRGKQVI-AVARTCNLLFII 156
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-----LGNMNFDDI---------- 282
+G+VG+P+ GKST ++ ++ + ++ F T+ PN + + FD +
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 283 --QITVADIPGLIKGAHENRGLGHAFLRHI 310
+ V DI GL+KGAH +GLG+AFL HI
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHI 114
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 239 GLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD----------------- 281
G+VG+P+ GKSTL A+++A +Y F T+ PN G + D
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65
Query: 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320
+ DI GL+ GA + GLG+ FL +I T + +VV
Sbjct: 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 24/115 (20%)
Query: 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLG--------------------N 276
++G+VG P+ GKST A + + +Y FTT+ N+G N
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 277 MNFDD----IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD 327
+ + I + D+ GL+ GAHE RGLG+ FL + L +VVD D
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTD 116
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 29/165 (17%)
Query: 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294
I V + G P+ GKSTLL A++ AKP + Y FTT N+G + + D PGL+
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226
Query: 295 GAHENRGLGHAFLRHIERTKVLA---------YVVDLAS--GLDGRKGIKPWKQLRDLII 343
R IE+ +LA Y+ D + G + I ++++
Sbjct: 227 RPISERN-------EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV----- 274
Query: 344 ELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPV 388
H E D P LVV NKID EE + LE+ V+ + P+
Sbjct: 275 ----HGE-FKDLPFLVVINKIDV-ADEENIKRLEKFVKEKGLNPI 313
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299
L G P+ GKS+ + +SRA V YSFTT +G+ + + + D PGL+ A EN
Sbjct: 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN 93
Query: 300 RGLGH----AFLRHIERTKVLAYVVDLA--SGLDGRKGIKPWKQLRDLIIELEHHQEGLS 353
R L HI V+ +++D++ GL ++ I + ++ + S
Sbjct: 94 RNTIEMTTITALAHIN--GVILFIIDISEQCGLTIKEQINLFYSIKSV----------FS 141
Query: 354 DRPSLVVANKIDE--------DGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRM 405
++ ++ NKID+ D + + L+ + + GV + K+
Sbjct: 142 NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
Query: 406 LVNGEKSERLSLDKIQV 422
L+ +++E + LD+ Q+
Sbjct: 202 LLKNDQAESILLDQEQL 218
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 239 GLVGMPSAGKSTLLGAISRA---KPAVGHYSFTTLRPNLGNMNFDDIQ------------ 283
G+VG P+ GKST AI+++ PA +Y + T+ P + D +
Sbjct: 24 GIVGXPNVGKSTFFRAITKSVLGNPA--NYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 284 -----ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV---DLASGLDGRKGIKPW 335
+TV DI GL KGA GLG+AFL H+ + VV D A + + P
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPI 141
Query: 336 KQLRDLIIEL--------EHHQEGL 352
+ L ++ EL E H EGL
Sbjct: 142 RDLSIIVDELLIKDAEFVEKHLEGL 166
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 17/179 (9%)
Query: 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294
+ V LVG P+ GK+T+ A++ + VG++ T+ G M + + + V D+PG+
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354
H+ I R +L D+ + + +R+L + LE + +
Sbjct: 63 LT------AHSIDELIARNFILDGNADVIVDIVDSTCL-----MRNLFLTLELFE--MEV 109
Query: 355 RPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410
+ ++V NK D + GA+ +++ R+ GVP+ P A EGV ELK + ++ G+
Sbjct: 110 KNIILVLNKFDLLKKKGAKIDIKKM-RKELGVPVIPTNAKKGEGVEELKRMIALMAEGK 167
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 90/184 (48%), Gaps = 22/184 (11%)
Query: 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL--IK 294
++ L+G P+ GKST+ A++ +G++ T+ G ++ + V D+PG+ +
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354
+ + ++ + E+ ++ +VD A+ L+ R+L + L+ + G +
Sbjct: 69 ANSIDEIIARDYIIN-EKPDLVVNIVD-ATALE-----------RNLYLTLQLMEMGAN- 114
Query: 355 RPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411
L+ NK+D G E ++LE ++ GV + P+ A + G+ ELK + + V +K
Sbjct: 115 --LLLALNKMDLAKSLGIEIDVDKLE-KILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171
Query: 412 SERL 415
+ +
Sbjct: 172 TAEI 175
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291
+GL+G P++GK+TL ++ ++ VG+++ T+ G + D Q+T+ D+PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291
+GL+G P++GK+TL ++ ++ VG+++ T+ G + D Q+T+ D+PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291
+GL+G P++GK+TL ++ ++ VG+++ T+ G + D Q+T+ D+PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL--IK 294
++ L+G P+ GKST+ A++ +G++ T+ G ++ + V D+PG+ +
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 65
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354
+ + ++ + E+ ++ +VD A+ L+ R+L + L+ + G +
Sbjct: 66 ANSIDEIIARDYIIN-EKPDLVVNIVD-ATALE-----------RNLYLTLQLXEXGAN- 111
Query: 355 RPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411
L+ NK D G E ++LE ++ GV + P+ A + G+ ELK + + V +K
Sbjct: 112 --LLLALNKXDLAKSLGIEIDVDKLE-KILGVKVVPLSAAKKXGIEELKKAISIAVKDKK 168
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291
VGL+G P++GK+TL ++ A+ VG+++ T+ G D Q+T+ D+PG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL--IK 294
++ L+G P+ GKST+ A++ +G++ T+ G ++ + V D+PG+ +
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354
+ + ++ + E+ ++ +VD A+ L+ R+L + L+ + G +
Sbjct: 65 ANSIDEIIARDYIIN-EKPDLVVNIVD-ATALE-----------RNLYLTLQLMEMGAN- 110
Query: 355 RPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407
L+ NK+D G E ++LE ++ GV + P+ A + G+ ELK + + V
Sbjct: 111 --LLLALNKMDLAKSLGIEIDVDKLE-KILGVKVVPLSAAKKMGIEELKKAISIAV 163
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL--IK 294
++ L+G P+ GKST+ A++ +G++ T+ G ++ + V D+PG+ +
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354
+ + ++ + E+ ++ +VD A+ L+ R+L + L+ + G +
Sbjct: 65 ANSIDEIIARDYIIN-EKPDLVVNIVD-ATALE-----------RNLYLTLQLMEMGAN- 110
Query: 355 RPSLVVANKID---EDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407
L+ NK+D G E ++LE ++ GV + P+ A + G+ ELK + + V
Sbjct: 111 --LLLALNKMDLAKSLGIEIDVDKLE-KILGVKVVPLSAAKKMGIEELKKAISIAV 163
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 208 KLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF 267
KL + +S + E ES + +I +G+VG ++GK++L +++ V F
Sbjct: 155 KLMKELESIKIFKEKSIESN---KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211
Query: 268 TTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK---VLAYVVDLAS 324
TT+ P + ++ +I + D G I+G + AF + K L V+D S
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ--IVDAFFVTLSEAKYSDALILVID--S 267
Query: 325 GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERR 379
I+ + +++ E+ G+S +P LV NKID+ + ++ E+L +
Sbjct: 268 TFSENLLIETLQSSFEILREI-----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE 322
Query: 380 VQGVPIYPVCAV 391
+ PI+ V +
Sbjct: 323 LYS-PIFDVIPI 333
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 23/139 (16%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNF-DDIQITVADIPGLIKG 295
V +VG P+ GKSTLL + K ++ T R LG N ++ QI D PG I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG-IYE 71
Query: 296 AHENRGLGHAFL----RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG 351
++ LGH+ + + +E V+ +++D G W+ RD E +Q
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG---------WRP-RD----EEIYQNF 117
Query: 352 LS--DRPSLVVANKIDEDG 368
+ ++P +VV NKID+ G
Sbjct: 118 IKPLNKPVIVVINKIDKIG 136
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 23/139 (16%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNF-DDIQITVADIPGLIKG 295
V +VG P+ GKSTLL + K ++ T R LG N ++ QI D PG I
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG-IYE 70
Query: 296 AHENRGLGHAFL----RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG 351
++ LGH+ + + +E V+ +++D G W+ RD E +Q
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG---------WRP-RD----EEIYQNF 116
Query: 352 LS--DRPSLVVANKIDEDG 368
+ ++P +VV NKID+ G
Sbjct: 117 IKPLNKPVIVVINKIDKIG 135
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 208 KLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF 267
KL + +S + E ES + +I +G+VG ++GK++L +++ V F
Sbjct: 155 KLMKELESIKIFKEKSIESN---KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLF 211
Query: 268 TTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK---VLAYVVDLAS 324
TT+ P + ++ +I + D I+G + AF + K L V+D S
Sbjct: 212 TTMSPKRYAIPINNRKIMLVDTVSFIRGIPPQ--IVDAFFVTLSEAKYSDALILVID--S 267
Query: 325 GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERR 379
I+ + +++ E+ G+S +P LV NKID+ + ++ E+L +
Sbjct: 268 TFSENLLIETLQSSFEILREI-----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKE 322
Query: 380 VQGVPIYPVCAV 391
+ PI+ V +
Sbjct: 323 LYS-PIFDVIPI 333
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294
+ V L G P+ GK++L A++ K V ++ T+ G + I + D+PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG--- 61
Query: 295 GAHENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 353
LG++ + I R +L DL + + P + L L+ LE
Sbjct: 62 ----TYSLGYSSIDEKIARDYLLKGDADLV--ILVADSVNPEQSLYLLLEILEM------ 109
Query: 354 DRPSLVVANKIDE---DGAEEVYEELERRVQGVPIYPVCAVLEEGVPELK 400
++ ++ IDE G + EL++ + G+P+ +V EG+ ELK
Sbjct: 110 EKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSSVTGEGLEELK 158
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292
L+G P+ GK+TL A++ A VG++ T+ G + I + D+PG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI 293
+I +G+VG ++GK++L +++ V FTT+ P + ++ +I + D I
Sbjct: 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFI 237
Query: 294 KGAHENRGLGHAFLRHIERTK---VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE 350
+G + AF + K L V+D S I+ + +++ E+
Sbjct: 238 RGIPPQ--IVDAFFVTLSEAKYSDALILVID--STFSENLLIETLQSSFEILREI----- 288
Query: 351 GLSDRPSLVVANKIDEDGAE-----EVYEELERRVQGVPIYPVCAV 391
G+S +P LV NKID+ + ++ E+L + + PI+ V +
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYS-PIFDVIPI 333
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294
+ V L G P+ GK++L A++ K V ++ T+ G + I + D+PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG--- 61
Query: 295 GAHENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 353
LG++ + I R +L DL + + P + L L+ LE
Sbjct: 62 ----TYSLGYSSIDEKIARDYLLKGDADLVILV--ADSVNPEQSLYLLLEILEM------ 109
Query: 354 DRPSLVVANKIDE---DGAEEVYEELERRVQGVPIYPVCAVLEEGVPELK 400
++ ++ IDE G + EL++ + G+P+ +V EG+ ELK
Sbjct: 110 EKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSSVTGEGLEELK 158
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291
V L G P+ GK++L A++ K V ++ T+ G + I + D+PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292
K+ V + G+ ++GK+T++ + A+ + H + T+ N+ + TV D+ G
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT-ATVGYNVETFEKGRVAFTVFDMGG- 72
Query: 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQ 349
A + RGL + +I+ + +VVD + L + I+ + D+ EL
Sbjct: 73 ---AKKFRGLWETYYDNID---AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELP--- 123
Query: 350 EGLSDRPSLVVANKIDEDGAEEVYEELE 377
G P L ANK+D GA+ E +E
Sbjct: 124 -GGGRVPFLFFANKMDAAGAKTAAELVE 150
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 18/189 (9%)
Query: 232 LKSIADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIP 290
L++ V +VG P+ GKS+LL A S++ A V TT + I + V D
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTA 280
Query: 291 GLIKGAHENRGLGHAFLRHIERTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQ 349
G+ + + + +G +ER++ A DL +D G W I E H
Sbjct: 281 GIRETSDQVEKIG------VERSRQAANTADLVLLTIDAATG---WTTGDQEIYEQVKH- 330
Query: 350 EGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409
RP ++V NKID +++ LE I A ++G+ L+ + +V
Sbjct: 331 -----RPLILVMNKIDL-VEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384
Query: 410 EKSERLSLD 418
K + +D
Sbjct: 385 GKVQAADMD 393
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299
L+G+ +AGK+TLL + A + H + T N+ ++ ++ V DI GL
Sbjct: 9 LLGLDNAGKTTLLKQL--ASEDISHIT-PTQGFNIKSVQSQGFKLNVWDIGGL------- 58
Query: 300 RGLGHAFLRHIERTKVLAYVVDLA 323
R + + + E T +L YV+D A
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSA 82
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 25/154 (16%)
Query: 221 EPGSESELILELKSIADVGLVGMPSAGKSTLLGAI-SRAKPAVGHYSFTTLRPNLGNMNF 279
E G + E E+ V +VG P+ GKSTL AI ++ + V TT P +
Sbjct: 166 EKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI 225
Query: 280 DDIQITVADIPGLIKGAH-ENRGL----GHAFLRHIERTKVLAYVVDLASGLDGRKGIKP 334
D + D GL + + E R + + + IE+ V+ V+D G
Sbjct: 226 DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG--------- 276
Query: 335 WKQLRDLIIELEHHQEGLSD---RPSLVVANKID 365
I + GL + R S+VV NK D
Sbjct: 277 -------ITRQDQRXAGLXERRGRASVVVFNKWD 303
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 228 LILELKSIAD----VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ 283
++ +LKS D + L+G+ +AGK+TLL + A + H + T N+ ++ +
Sbjct: 6 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL--ASEDISHIT-PTQGFNIKSVQSQGFK 62
Query: 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLA 323
+ V DI G R + + + E T +L YV+D A
Sbjct: 63 LNVWDIGG-------QRKIRPYWRSYFENTDILIYVIDSA 95
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 228 LILELKSIAD----VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ 283
++ +LKS D + L+G+ +AGK+TLL + A + H + T N+ ++ +
Sbjct: 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQL--ASEDISHIT-PTQGFNIKSVQSQGFK 61
Query: 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLA 323
+ V DI G R + + + E T +L YV+D A
Sbjct: 62 LNVWDIGG-------QRKIRPYWRSYFENTDILIYVIDSA 94
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 140 TNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNV 183
TN E+ G K I+ +I +L+K+ Q I AY +GGL N
Sbjct: 254 TNFSTKAMREENGLKYIEESIEKLSKRHQYHIRAYDPKGGLDNA 297
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299
L+G+ +AGK+TLL + A + H + T N+ ++ ++ V DI G
Sbjct: 9 LLGLDNAGKTTLLKQL--ASEDISHIT-PTQGFNIKSVQSQGFKLNVWDIGG-------Q 58
Query: 300 RGLGHAFLRHIERTKVLAYVVDLA 323
R + + + E T +L YV+D A
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSA 82
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 263 GHYSFTTLRPNLGNMNFDDIQITVADI-PGLIKGAHENRGLGHAFLRHIERTK--VLAYV 319
GH +FTTLR G + D+ I + DI G E + + RT V A
Sbjct: 79 GHEAFTTLRKRGGALA--DLAILIVDINEGFKPQTQEALNILRXY-----RTPFVVAANK 131
Query: 320 VDLASGLDGRKGIKPWKQL---RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEE 375
+D G +G +P+ + +D+ + Q+ L D + K+ E+G E E ++
Sbjct: 132 IDRIHGWRVHEG-RPFXETFSKQDIQV-----QQKL-DTKVYELVGKLHEEGFESERFDR 184
Query: 376 LERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERLSLDK 419
+ V I P+ A+ EG+PEL L L E+L +++
Sbjct: 185 VTDFASQVSIIPISAITGEGIPELLTXLXGLAQQYLREQLKIEE 228
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 140 TNLQHATQAEQEGEKQIQYNIAELTKQGQRVIIAYGGEGGLGNV 183
TN E+ G K I+ I +L+K+ Q I AY +GGL N
Sbjct: 273 TNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNA 316
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 21/149 (14%)
Query: 240 LVGMPSAGKSTLLGA-ISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH- 297
L+G P+ GKS+L+ A + + V + + TT + ++ + + D G+ K
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
Query: 298 ----ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 353
E + A L+ I+R++V+A V LDG +GI +D I H+ G
Sbjct: 260 YETTEKYSVLRA-LKAIDRSEVVAVV------LDGEEGIIE----QDKRIAGYAHEAG-- 306
Query: 354 DRPSLVVANKIDE-DGAEEVYEELERRVQ 381
+ ++V NK D D E +E E ++
Sbjct: 307 -KAVVIVVNKWDAVDKDESTMKEFEENIR 334
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 263 GHYSFTTLRPNLGNMNFDDIQITVADI-PGLIKGAHENRGLGHAFLRHIERTK--VLAYV 319
GH +FTTLR G + D+ I + DI G E + + RT V A
Sbjct: 79 GHEAFTTLRKRGGALA--DLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANK 131
Query: 320 VDLASGL---DGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEE 375
+D G +GR ++ + + +D+ + Q+ L D + K+ E+G E E ++
Sbjct: 132 IDRIHGWRVHEGRPFMETFSK-QDIQV-----QQKL-DTKVYELVGKLHEEGFESERFDR 184
Query: 376 LERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERLSLDK 419
+ V I P+ A+ EG+PEL L L E+L +++
Sbjct: 185 VTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEE 228
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDDIQITVADIPG 291
S+ ++ L+G P++GK++L I+ VG++ T+ + L N D + + D+PG
Sbjct: 2 SMTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD---LEIQDLPG 58
Query: 292 L 292
+
Sbjct: 59 I 59
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDDIQITVADIPG 291
S+ ++ L+G P++GK++L I+ VG++ T+ + L N D + + D+PG
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD---LEIQDLPG 58
Query: 292 L 292
+
Sbjct: 59 I 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDDIQITVADIPG 291
S+ ++ L+G P++GK++L I+ VG++ T+ + L N D + + D+PG
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD---LEIQDLPG 58
Query: 292 L 292
+
Sbjct: 59 I 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDDIQITVADIPG 291
S+ ++ L+G P++GK++L I+ VG++ T+ + L N D + + D+PG
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD---LEIQDLPG 58
Query: 292 L 292
+
Sbjct: 59 I 59
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-GNMNFDDIQITVADIPGLIK 294
V +VG P+ GKSTLL + K A T R L G + QI D PGL K
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67
>pdb|1UTB|B Chain B, Dntr From Burkholderia Sp. Strain Dnt
Length = 315
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN++ D + + +
Sbjct: 110 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLSEDMESGAVDLALGL 161
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 162 LPELQTGFFQRRLFRHRYV 180
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 240 LVGMPSAGKSTLLGA-ISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH- 297
+ G P+AGKSTLL + + + V H TT D + D GL +
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 297
Query: 298 -ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 356
E+ G+ + ++ E +L Y++DL + ++L D + E+ +
Sbjct: 298 IEHEGIRRSRMKMAEADLIL-YLLDLGT-----------ERLDDELTEIRELKAAHPAAK 345
Query: 357 SLVVANKID 365
L VANK+D
Sbjct: 346 FLTVANKLD 354
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 21/149 (14%)
Query: 240 LVGMPSAGKSTLLGA-ISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH- 297
L+G P+ GKS+L+ A + + V + + TT + ++ + + D G K
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239
Query: 298 ----ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS 353
E + A L+ I+R++V+A V LDG +GI +D I H+ G
Sbjct: 240 YETTEKYSVLRA-LKAIDRSEVVAVV------LDGEEGIIE----QDKRIAGYAHEAG-- 286
Query: 354 DRPSLVVANKIDE-DGAEEVYEELERRVQ 381
+ ++V NK D D E +E E ++
Sbjct: 287 -KAVVIVVNKWDAVDKDESTXKEFEENIR 314
>pdb|1UTB|A Chain A, Dntr From Burkholderia Sp. Strain Dnt
Length = 315
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN+ D + + +
Sbjct: 110 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLKEDMESGAVDLALGL 161
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 162 LPELQTGFFQRRLFRHRYV 180
>pdb|2Y7W|A Chain A, Dntr Inducer Binding Domain
pdb|2Y7W|B Chain B, Dntr Inducer Binding Domain
pdb|2Y7W|C Chain C, Dntr Inducer Binding Domain
pdb|2Y7W|D Chain D, Dntr Inducer Binding Domain
pdb|2Y84|A Chain A, Dntr Inducer Binding Domain
pdb|2Y84|B Chain B, Dntr Inducer Binding Domain
pdb|2Y84|C Chain C, Dntr Inducer Binding Domain
pdb|2Y84|D Chain D, Dntr Inducer Binding Domain
pdb|2Y84|E Chain E, Dntr Inducer Binding Domain
pdb|2Y84|F Chain F, Dntr Inducer Binding Domain
pdb|2Y84|G Chain G, Dntr Inducer Binding Domain
pdb|2Y84|H Chain H, Dntr Inducer Binding Domain
Length = 228
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN+ D + + +
Sbjct: 23 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLKEDMESGAVDLALGL 74
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 75 LPELQTGFFQRRLFRHRYV 93
>pdb|1UTH|A Chain A, Dntr From Burkholderia Sp. Strain Dnt In Complex With
Thiocyanate
Length = 315
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN+ D + + +
Sbjct: 110 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLKEDMESGAVDLALGL 161
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 162 LPELQTGFFQRRLFRHRYV 180
>pdb|2Y7K|A Chain A, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|B Chain B, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|C Chain C, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7K|D Chain D, Dntr Inducer Binding Domain In Complex With Salicylate.
Monoclinic Crystal Form
pdb|2Y7P|A Chain A, Dntr Inducer Binding Domain In Complex With Salicylate.
Trigonal Crystal Form
Length = 218
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN+ D + + +
Sbjct: 13 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLKEDMESGAVDLALGL 64
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 65 LPELQTGFFQRRLFRHRYV 83
>pdb|2Y7R|A Chain A, Dntr Inducer Binding Domain
pdb|2Y7R|B Chain B, Dntr Inducer Binding Domain
pdb|2Y7R|C Chain C, Dntr Inducer Binding Domain
pdb|2Y7R|D Chain D, Dntr Inducer Binding Domain
pdb|2Y7R|E Chain E, Dntr Inducer Binding Domain
pdb|2Y7R|F Chain F, Dntr Inducer Binding Domain
pdb|2Y7R|G Chain G, Dntr Inducer Binding Domain
pdb|2Y7R|H Chain H, Dntr Inducer Binding Domain
Length = 218
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 234 SIADVG-LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVAD 288
++ D+G + MP L+ A+++ P H +TLRPN GN+ D + + +
Sbjct: 13 AMTDIGEMYFMPP-----LMEALAQRAP---HIQISTLRPNAGNLKEDMESGAVDLALGL 64
Query: 289 IPGLIKGAHENRGLGHAFL 307
+P L G + R H ++
Sbjct: 65 LPELQTGFFQRRLFRHRYV 83
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLG-NMNFDDIQITVADIPGLIKGA 296
V + G P+AGKS+LL A++ + A+ T R L +++ D + + + D GL + +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69
Query: 297 HENRGLG-HAFLRHIERTKVLAYVVD 321
E +G + IE+ + ++VD
Sbjct: 70 DEVERIGIERAWQEIEQADRVLFMVD 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,494,904
Number of Sequences: 62578
Number of extensions: 527252
Number of successful extensions: 1251
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 87
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)