Query 014494
Match_columns 423
No_of_seqs 526 out of 3190
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 5.1E-77 1.1E-81 569.4 29.5 302 3-411 28-336 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 1.4E-67 3.1E-72 522.9 34.0 299 3-411 27-331 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 1E-66 2.2E-71 529.0 33.9 302 3-412 27-331 (424)
4 KOG1489 Predicted GTP-binding 100.0 4.7E-67 1E-71 494.9 28.9 297 3-406 66-365 (366)
5 PRK12296 obgE GTPase CgtA; Rev 100.0 1.2E-66 2.5E-71 534.5 32.7 302 3-411 29-343 (500)
6 TIGR02729 Obg_CgtA Obg family 100.0 1.9E-65 4E-70 507.3 33.9 297 3-407 26-328 (329)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 5.3E-65 1.2E-69 513.7 32.1 301 3-410 28-335 (390)
8 COG2262 HflX GTPases [General 100.0 8.5E-41 1.8E-45 328.2 12.6 249 138-410 103-358 (411)
9 PRK11058 GTPase HflX; Provisio 100.0 2.2E-35 4.8E-40 301.5 13.6 247 138-408 108-362 (426)
10 TIGR03156 GTP_HflX GTP-binding 100.0 2.7E-34 5.9E-39 287.2 12.5 244 138-406 100-350 (351)
11 PF01018 GTP1_OBG: GTP1/OBG; 100.0 1.4E-32 3E-37 242.4 6.9 128 3-233 26-155 (156)
12 KOG0410 Predicted GTP binding 100.0 4.6E-30 1E-34 243.8 2.0 244 137-409 89-342 (410)
13 COG1163 DRG Predicted GTPase [ 99.9 3.9E-26 8.4E-31 217.9 12.5 202 200-408 31-289 (365)
14 cd01898 Obg Obg subfamily. Th 99.9 1.2E-24 2.6E-29 194.6 18.9 166 236-407 1-170 (170)
15 PF02421 FeoB_N: Ferrous iron 99.9 7.7E-24 1.7E-28 187.4 12.3 150 237-403 2-156 (156)
16 cd01899 Ygr210 Ygr210 subfamil 99.9 7E-23 1.5E-27 201.9 19.8 178 238-415 1-276 (318)
17 cd01881 Obg_like The Obg-like 99.9 1.1E-22 2.4E-27 182.5 16.3 167 240-407 1-176 (176)
18 COG1159 Era GTPase [General fu 99.9 6E-22 1.3E-26 188.6 16.4 162 237-411 8-175 (298)
19 TIGR00436 era GTP-binding prot 99.9 2.1E-21 4.6E-26 188.1 18.9 161 237-411 2-167 (270)
20 cd01878 HflX HflX subfamily. 99.9 4.5E-22 9.8E-27 184.3 12.4 194 196-407 7-204 (204)
21 PRK09602 translation-associate 99.9 2.6E-21 5.6E-26 196.2 18.6 174 237-411 3-274 (396)
22 cd01896 DRG The developmentall 99.9 4.2E-21 9.1E-26 182.0 18.7 169 236-408 1-226 (233)
23 PTZ00258 GTP-binding protein; 99.9 2.6E-21 5.6E-26 194.4 18.1 161 234-394 20-266 (390)
24 cd01897 NOG NOG1 is a nucleola 99.9 9.1E-21 2E-25 169.3 18.6 163 236-407 1-167 (168)
25 COG0012 Predicted GTPase, prob 99.9 2.8E-21 6.1E-26 189.5 15.8 164 236-399 3-255 (372)
26 COG1160 Predicted GTPases [Gen 99.9 1.4E-20 3E-25 188.4 16.7 159 236-408 4-165 (444)
27 cd01900 YchF YchF subfamily. 99.9 6.7E-21 1.4E-25 183.7 13.7 162 238-399 1-244 (274)
28 PRK09601 GTP-binding protein Y 99.8 1.4E-20 3E-25 187.2 15.9 161 236-396 3-245 (364)
29 PRK15494 era GTPase Era; Provi 99.8 6.4E-20 1.4E-24 183.2 19.0 162 237-411 54-219 (339)
30 PRK05291 trmE tRNA modificatio 99.8 3.1E-21 6.7E-26 199.3 8.3 226 152-409 143-371 (449)
31 COG1084 Predicted GTPase [Gene 99.8 1.5E-19 3.3E-24 173.6 18.0 161 234-406 167-334 (346)
32 KOG1486 GTP-binding protein DR 99.8 4.2E-20 9.1E-25 170.5 12.8 170 235-408 62-288 (364)
33 cd01861 Rab6 Rab6 subfamily. 99.8 3.1E-19 6.7E-24 158.1 16.6 154 237-407 2-161 (161)
34 cd04171 SelB SelB subfamily. 99.8 4.7E-19 1E-23 156.9 17.5 150 237-405 2-163 (164)
35 cd01879 FeoB Ferrous iron tran 99.8 1.5E-19 3.3E-24 159.2 14.2 152 240-408 1-157 (158)
36 cd04109 Rab28 Rab28 subfamily. 99.8 9.5E-19 2.1E-23 163.8 19.6 159 237-410 2-168 (215)
37 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.7E-19 7.9E-24 158.7 15.8 154 237-405 1-166 (167)
38 cd04136 Rap_like Rap-like subf 99.8 1.5E-18 3.1E-23 153.9 19.0 154 237-407 3-162 (163)
39 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.1E-18 2.5E-23 153.9 18.2 154 237-407 3-161 (162)
40 PRK00089 era GTPase Era; Revie 99.8 6.9E-19 1.5E-23 172.3 18.3 162 237-411 7-174 (292)
41 cd01865 Rab3 Rab3 subfamily. 99.8 1.2E-18 2.6E-23 155.8 18.3 155 237-408 3-163 (165)
42 cd01894 EngA1 EngA1 subfamily. 99.8 6.4E-19 1.4E-23 154.7 16.1 155 239-407 1-157 (157)
43 cd01868 Rab11_like Rab11-like. 99.8 7.2E-19 1.6E-23 156.6 16.6 155 236-407 4-164 (165)
44 COG0486 ThdF Predicted GTPase 99.8 3.6E-19 7.7E-24 178.8 15.7 162 232-410 214-378 (454)
45 cd04124 RabL2 RabL2 subfamily. 99.8 2.1E-18 4.7E-23 153.7 18.9 156 237-410 2-160 (161)
46 cd04119 RJL RJL (RabJ-Like) su 99.8 2E-18 4.3E-23 153.3 18.6 156 237-407 2-166 (168)
47 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.1E-18 4.6E-23 153.9 18.6 156 236-408 3-164 (166)
48 cd04142 RRP22 RRP22 subfamily. 99.8 2.6E-18 5.6E-23 159.0 19.6 167 237-410 2-176 (198)
49 cd01864 Rab19 Rab19 subfamily. 99.8 1.9E-18 4.1E-23 154.2 18.0 155 236-406 4-164 (165)
50 cd04112 Rab26 Rab26 subfamily. 99.8 2E-18 4.4E-23 158.4 18.7 158 237-411 2-166 (191)
51 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.1E-18 4.6E-23 153.6 18.0 153 236-408 1-166 (168)
52 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 3.4E-18 7.3E-23 158.2 19.6 160 237-410 2-170 (201)
53 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.8E-18 6.1E-23 152.2 18.2 154 237-407 4-163 (164)
54 cd01866 Rab2 Rab2 subfamily. 99.8 1.9E-18 4.2E-23 154.9 17.1 156 236-408 5-166 (168)
55 cd01867 Rab8_Rab10_Rab13_like 99.8 1.8E-18 3.9E-23 154.9 16.7 156 236-408 4-165 (167)
56 smart00173 RAS Ras subfamily o 99.8 5.6E-18 1.2E-22 150.6 19.6 155 237-408 2-162 (164)
57 cd04175 Rap1 Rap1 subgroup. T 99.8 5.2E-18 1.1E-22 151.1 19.4 155 237-408 3-163 (164)
58 cd04144 Ras2 Ras2 subfamily. 99.8 2.3E-18 5.1E-23 157.9 17.4 158 237-410 1-165 (190)
59 smart00175 RAB Rab subfamily o 99.8 4.6E-18 1E-22 150.7 18.7 155 237-408 2-162 (164)
60 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.5E-18 5.4E-23 150.7 16.8 153 236-407 2-156 (157)
61 cd04114 Rab30 Rab30 subfamily. 99.8 2.8E-18 6E-23 153.3 17.0 157 234-407 6-168 (169)
62 cd04157 Arl6 Arl6 subfamily. 99.8 3.4E-18 7.4E-23 151.4 16.7 153 237-405 1-161 (162)
63 cd01895 EngA2 EngA2 subfamily. 99.8 7.8E-18 1.7E-22 149.8 19.0 157 237-406 4-173 (174)
64 cd04120 Rab12 Rab12 subfamily. 99.8 7.3E-18 1.6E-22 156.5 19.5 156 237-409 2-164 (202)
65 cd04122 Rab14 Rab14 subfamily. 99.8 4E-18 8.7E-23 152.3 16.9 153 237-407 4-163 (166)
66 cd04121 Rab40 Rab40 subfamily. 99.8 8.9E-18 1.9E-22 154.3 19.6 156 236-410 7-169 (189)
67 cd04140 ARHI_like ARHI subfami 99.8 5.7E-18 1.2E-22 151.3 17.7 154 237-406 3-163 (165)
68 cd04158 ARD1 ARD1 subfamily. 99.8 4.2E-18 9.1E-23 153.1 16.9 157 237-411 1-164 (169)
69 KOG1491 Predicted GTP-binding 99.8 1.6E-18 3.6E-23 166.5 14.9 90 236-325 21-127 (391)
70 smart00178 SAR Sar1p-like memb 99.8 4.4E-18 9.6E-23 155.4 16.8 153 236-406 18-183 (184)
71 cd01863 Rab18 Rab18 subfamily. 99.8 6.2E-18 1.3E-22 149.8 17.1 154 237-406 2-160 (161)
72 cd04150 Arf1_5_like Arf1-Arf5- 99.8 5.1E-18 1.1E-22 151.2 16.5 151 237-405 2-158 (159)
73 cd04123 Rab21 Rab21 subfamily. 99.8 1.1E-17 2.4E-22 147.6 18.6 154 237-407 2-161 (162)
74 cd04106 Rab23_lke Rab23-like s 99.8 9.2E-18 2E-22 148.7 18.1 152 237-406 2-161 (162)
75 cd04101 RabL4 RabL4 (Rab-like4 99.8 5.5E-18 1.2E-22 150.6 16.7 153 237-407 2-163 (164)
76 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5E-18 1.1E-22 153.4 16.6 152 236-405 16-173 (174)
77 cd01862 Rab7 Rab7 subfamily. 99.8 1.5E-17 3.2E-22 148.7 19.2 160 237-410 2-169 (172)
78 cd04113 Rab4 Rab4 subfamily. 99.8 5.8E-18 1.3E-22 150.1 16.4 153 237-406 2-160 (161)
79 cd04154 Arl2 Arl2 subfamily. 99.8 4.6E-18 1E-22 153.2 15.9 151 236-404 15-171 (173)
80 cd00879 Sar1 Sar1 subfamily. 99.8 6.1E-18 1.3E-22 154.5 16.7 154 236-407 20-190 (190)
81 cd04151 Arl1 Arl1 subfamily. 99.8 6.8E-18 1.5E-22 149.6 16.2 151 237-405 1-157 (158)
82 COG0370 FeoB Fe2+ transport sy 99.8 2.5E-18 5.4E-23 179.3 15.5 159 237-412 5-168 (653)
83 cd04159 Arl10_like Arl10-like 99.8 8E-18 1.7E-22 147.3 16.4 152 237-405 1-158 (159)
84 PRK04213 GTP-binding protein; 99.8 1.8E-17 3.8E-22 153.0 19.5 168 236-413 10-197 (201)
85 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-17 2.5E-22 172.2 20.1 162 236-410 173-346 (429)
86 cd04139 RalA_RalB RalA/RalB su 99.8 2E-17 4.4E-22 146.4 19.0 155 237-408 2-162 (164)
87 PRK03003 GTP-binding protein D 99.8 6.1E-18 1.3E-22 176.3 18.1 163 233-409 36-200 (472)
88 PRK03003 GTP-binding protein D 99.8 1.3E-17 2.7E-22 173.9 20.5 162 235-411 211-385 (472)
89 cd04127 Rab27A Rab27a subfamil 99.8 1.5E-17 3.3E-22 150.3 18.5 155 237-407 6-176 (180)
90 cd04116 Rab9 Rab9 subfamily. 99.8 1.7E-17 3.7E-22 148.6 18.5 157 236-406 6-169 (170)
91 cd00878 Arf_Arl Arf (ADP-ribos 99.8 9.9E-18 2.2E-22 148.2 16.5 151 237-405 1-157 (158)
92 cd04146 RERG_RasL11_like RERG/ 99.8 1.4E-17 3E-22 148.6 17.6 157 237-408 1-164 (165)
93 cd00154 Rab Rab family. Rab G 99.8 1.3E-17 2.7E-22 145.8 16.9 151 237-404 2-158 (159)
94 cd01890 LepA LepA subfamily. 99.8 2.3E-17 4.9E-22 148.9 18.9 152 237-408 2-177 (179)
95 cd04149 Arf6 Arf6 subfamily. 99.8 8.7E-18 1.9E-22 151.2 15.9 152 236-405 10-167 (168)
96 cd04176 Rap2 Rap2 subgroup. T 99.8 1.2E-17 2.7E-22 148.3 16.7 154 237-407 3-162 (163)
97 cd04110 Rab35 Rab35 subfamily. 99.8 1.3E-17 2.8E-22 154.2 17.4 156 236-409 7-168 (199)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.2E-17 2.6E-22 152.4 16.7 157 237-409 5-171 (183)
99 PTZ00369 Ras-like protein; Pro 99.8 1.3E-17 2.8E-22 152.8 17.0 158 236-410 6-169 (189)
100 PLN03110 Rab GTPase; Provision 99.8 1.1E-17 2.4E-22 156.8 16.9 157 236-409 13-175 (216)
101 COG1160 Predicted GTPases [Gen 99.8 1.2E-17 2.6E-22 167.4 17.9 164 235-411 178-354 (444)
102 cd01860 Rab5_related Rab5-rela 99.8 3.1E-17 6.7E-22 145.5 18.7 154 237-407 3-162 (163)
103 cd04163 Era Era subfamily. Er 99.8 2.3E-17 4.9E-22 145.3 17.6 158 237-407 5-168 (168)
104 cd00881 GTP_translation_factor 99.8 2.3E-17 5E-22 149.4 17.8 152 237-408 1-187 (189)
105 PRK00093 GTP-binding protein D 99.8 2.2E-17 4.7E-22 170.5 19.9 163 235-410 173-346 (435)
106 PRK09554 feoB ferrous iron tra 99.8 1.4E-17 3.1E-22 181.3 19.3 156 237-408 5-168 (772)
107 cd01889 SelB_euk SelB subfamil 99.8 1.6E-17 3.5E-22 152.6 16.7 152 237-408 2-186 (192)
108 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.4E-17 3.1E-22 171.4 18.0 160 232-409 200-361 (442)
109 cd04117 Rab15 Rab15 subfamily. 99.8 2.2E-17 4.7E-22 147.2 16.8 153 237-406 2-160 (161)
110 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 4.5E-17 9.8E-22 146.8 19.0 156 237-409 2-166 (170)
111 cd04118 Rab24 Rab24 subfamily. 99.8 3.6E-17 7.8E-22 149.9 18.6 155 237-409 2-167 (193)
112 cd04143 Rhes_like Rhes_like su 99.8 4.1E-17 9E-22 156.0 19.7 158 237-409 2-172 (247)
113 TIGR03594 GTPase_EngA ribosome 99.8 1.4E-17 3E-22 171.5 17.7 160 237-410 1-162 (429)
114 cd00876 Ras Ras family. The R 99.8 3.7E-17 8E-22 143.9 18.0 153 237-406 1-159 (160)
115 cd00877 Ran Ran (Ras-related n 99.8 2.5E-17 5.4E-22 147.8 17.0 153 237-409 2-160 (166)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.4E-17 3.1E-22 147.3 15.2 151 237-405 1-159 (160)
117 smart00177 ARF ARF-like small 99.8 2.6E-17 5.7E-22 149.0 17.0 154 236-407 14-173 (175)
118 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.3E-17 5E-22 148.2 16.1 151 237-405 1-166 (167)
119 cd04125 RabA_like RabA-like su 99.8 3.6E-17 7.7E-22 149.5 17.6 156 237-409 2-163 (188)
120 PRK00093 GTP-binding protein D 99.8 2.5E-17 5.5E-22 170.0 18.4 159 236-408 2-162 (435)
121 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.4E-17 9.6E-22 147.6 17.9 152 237-406 3-173 (175)
122 PLN00223 ADP-ribosylation fact 99.8 4.8E-17 1E-21 148.3 17.9 155 236-409 18-179 (181)
123 KOG1423 Ras-like GTPase ERA [C 99.8 1E-17 2.2E-22 159.1 13.7 161 237-409 74-272 (379)
124 cd04132 Rho4_like Rho4-like su 99.8 5.3E-17 1.2E-21 147.9 18.1 156 237-410 2-169 (187)
125 PF00009 GTP_EFTU: Elongation 99.8 1.9E-17 4.2E-22 151.7 15.1 153 236-408 4-187 (188)
126 PLN03108 Rab family protein; P 99.8 6.7E-17 1.5E-21 150.8 19.0 156 236-408 7-168 (210)
127 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.5E-17 3.3E-22 148.9 13.8 161 233-410 7-174 (205)
128 cd04115 Rab33B_Rab33A Rab33B/R 99.7 4.4E-17 9.6E-22 146.4 16.8 157 236-407 3-168 (170)
129 cd04137 RheB Rheb (Ras Homolog 99.7 8.3E-17 1.8E-21 145.6 18.7 158 237-411 3-166 (180)
130 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 5E-17 1.1E-21 146.8 17.2 156 237-409 4-165 (172)
131 cd04147 Ras_dva Ras-dva subfam 99.7 7E-17 1.5E-21 149.1 18.5 155 237-408 1-163 (198)
132 PLN03118 Rab family protein; P 99.7 5.4E-17 1.2E-21 151.4 17.9 158 236-410 15-179 (211)
133 PLN03071 GTP-binding nuclear p 99.7 4.4E-17 9.6E-22 153.1 17.3 154 237-409 15-173 (219)
134 cd04111 Rab39 Rab39 subfamily. 99.7 8.5E-17 1.8E-21 150.3 18.9 158 237-410 4-168 (211)
135 cd04128 Spg1 Spg1p. Spg1p (se 99.7 8E-17 1.7E-21 147.0 18.2 156 237-411 2-169 (182)
136 cd00880 Era_like Era (E. coli 99.7 7.3E-17 1.6E-21 140.2 17.2 155 240-407 1-163 (163)
137 TIGR00231 small_GTP small GTP- 99.7 1.3E-16 2.7E-21 138.7 18.7 154 236-404 2-160 (161)
138 cd04177 RSR1 RSR1 subgroup. R 99.7 1E-16 2.2E-21 143.6 18.6 155 237-407 3-163 (168)
139 PRK09518 bifunctional cytidyla 99.7 5.4E-17 1.2E-21 176.9 19.9 162 235-411 450-624 (712)
140 PRK09518 bifunctional cytidyla 99.7 4.1E-17 8.8E-22 177.8 18.7 164 232-409 272-437 (712)
141 smart00174 RHO Rho (Ras homolo 99.7 7.3E-17 1.6E-21 144.9 17.2 152 238-407 1-171 (174)
142 cd04134 Rho3 Rho3 subfamily. 99.7 6.5E-17 1.4E-21 148.2 17.0 155 237-409 2-175 (189)
143 cd04133 Rop_like Rop subfamily 99.7 8.7E-17 1.9E-21 146.1 17.6 154 237-408 3-173 (176)
144 PTZ00133 ADP-ribosylation fact 99.7 7.3E-17 1.6E-21 147.2 17.2 156 236-409 18-179 (182)
145 cd01892 Miro2 Miro2 subfamily. 99.7 5.3E-17 1.2E-21 146.1 16.0 155 236-408 5-166 (169)
146 cd01893 Miro1 Miro1 subfamily. 99.7 9.6E-17 2.1E-21 143.6 17.3 153 237-408 2-164 (166)
147 TIGR03598 GTPase_YsxC ribosome 99.7 5E-17 1.1E-21 147.6 15.3 147 235-397 18-179 (179)
148 PRK00454 engB GTP-binding prot 99.7 1.1E-16 2.4E-21 146.7 17.5 160 234-409 23-195 (196)
149 cd04155 Arl3 Arl3 subfamily. 99.7 8.4E-17 1.8E-21 144.4 16.1 151 236-405 15-172 (173)
150 cd01891 TypA_BipA TypA (tyrosi 99.7 1.3E-16 2.9E-21 146.7 17.8 144 236-399 3-173 (194)
151 cd01870 RhoA_like RhoA-like su 99.7 1.2E-16 2.5E-21 143.7 16.9 152 237-406 3-173 (175)
152 cd01871 Rac1_like Rac1-like su 99.7 1.6E-16 3.4E-21 143.9 17.8 152 237-406 3-173 (174)
153 cd01875 RhoG RhoG subfamily. 99.7 1.7E-16 3.8E-21 145.7 18.1 155 237-409 5-178 (191)
154 cd04126 Rab20 Rab20 subfamily. 99.7 2.1E-16 4.7E-21 148.5 19.0 153 237-408 2-190 (220)
155 cd04131 Rnd Rnd subfamily. Th 99.7 1.6E-16 3.5E-21 144.5 17.3 152 237-406 3-174 (178)
156 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2E-16 4.3E-21 144.5 17.9 152 237-406 7-178 (182)
157 cd04148 RGK RGK subfamily. Th 99.7 1.4E-16 3E-21 150.0 16.5 154 237-408 2-163 (221)
158 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 2.9E-16 6.3E-21 148.6 18.7 154 237-409 15-189 (232)
159 cd04135 Tc10 TC10 subfamily. 99.7 2.1E-16 4.5E-21 142.0 16.7 153 237-407 2-173 (174)
160 cd01888 eIF2_gamma eIF2-gamma 99.7 1.7E-16 3.6E-21 147.4 16.4 155 237-409 2-200 (203)
161 PRK15467 ethanolamine utilizat 99.7 1.1E-16 2.4E-21 142.7 14.5 145 237-410 3-149 (158)
162 cd00157 Rho Rho (Ras homology) 99.7 1.8E-16 4E-21 141.5 15.6 151 237-405 2-170 (171)
163 PF01926 MMR_HSR1: 50S ribosom 99.7 7.4E-17 1.6E-21 136.0 12.2 113 237-363 1-116 (116)
164 KOG0078 GTP-binding protein SE 99.7 3.9E-16 8.4E-21 141.7 17.3 157 235-408 12-174 (207)
165 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2.8E-16 6.1E-21 141.6 16.4 150 237-404 2-170 (173)
166 cd04103 Centaurin_gamma Centau 99.7 5.6E-16 1.2E-20 138.1 17.9 148 237-406 2-157 (158)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.2E-16 9.2E-21 139.6 16.7 149 238-405 2-163 (164)
168 cd04129 Rho2 Rho2 subfamily. 99.7 6.9E-16 1.5E-20 141.1 17.0 156 237-410 3-175 (187)
169 PF00025 Arf: ADP-ribosylation 99.7 2.8E-16 6E-21 142.5 14.2 153 237-407 16-175 (175)
170 cd01876 YihA_EngB The YihA (En 99.7 6.2E-16 1.3E-20 136.6 15.8 155 237-407 1-170 (170)
171 smart00176 RAN Ran (Ras-relate 99.7 5.8E-16 1.3E-20 143.5 16.2 149 241-409 1-155 (200)
172 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.2E-15 2.5E-20 143.6 18.2 153 237-407 3-175 (222)
173 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.8E-16 6.1E-21 146.4 13.7 145 237-400 1-186 (208)
174 KOG0092 GTPase Rab5/YPT51 and 99.7 4.1E-16 9E-21 139.2 13.8 159 237-412 7-171 (200)
175 TIGR00437 feoB ferrous iron tr 99.7 4.5E-16 9.7E-21 165.8 16.7 149 242-407 1-154 (591)
176 COG0218 Predicted GTPase [Gene 99.7 1.8E-15 3.8E-20 137.3 18.0 159 234-409 23-198 (200)
177 TIGR00475 selB selenocysteine- 99.7 7.2E-16 1.6E-20 164.0 18.0 155 237-411 2-169 (581)
178 KOG1487 GTP-binding protein DR 99.7 7E-17 1.5E-21 149.9 8.7 169 236-408 60-281 (358)
179 PRK09866 hypothetical protein; 99.7 3.6E-16 7.8E-21 162.7 14.7 110 283-405 231-350 (741)
180 cd01884 EF_Tu EF-Tu subfamily. 99.7 9.8E-16 2.1E-20 141.4 15.9 140 237-396 4-171 (195)
181 PF00071 Ras: Ras family; Int 99.7 2.4E-15 5.1E-20 133.4 17.7 153 237-407 1-160 (162)
182 TIGR02528 EutP ethanolamine ut 99.7 5.4E-16 1.2E-20 134.8 12.9 137 237-404 2-141 (142)
183 PRK05306 infB translation init 99.7 2E-15 4.4E-20 163.9 19.3 154 233-406 288-450 (787)
184 KOG0073 GTP-binding ADP-ribosy 99.7 3.5E-15 7.6E-20 129.7 16.7 154 237-408 18-178 (185)
185 TIGR00487 IF-2 translation ini 99.7 2.4E-15 5.3E-20 159.5 19.0 152 234-405 86-247 (587)
186 TIGR00092 GTP-binding protein 99.7 5.6E-16 1.2E-20 154.4 13.2 88 237-324 4-109 (368)
187 cd01873 RhoBTB RhoBTB subfamil 99.7 2.7E-15 5.9E-20 138.5 16.3 150 237-406 4-194 (195)
188 KOG1490 GTP-binding protein CR 99.7 1.7E-16 3.7E-21 159.0 8.8 162 234-406 167-339 (620)
189 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 3.9E-15 8.4E-20 133.1 15.9 160 236-411 23-188 (221)
190 CHL00189 infB translation init 99.6 3.3E-15 7.2E-20 160.9 18.0 155 233-407 242-409 (742)
191 PRK10512 selenocysteinyl-tRNA- 99.6 8.8E-15 1.9E-19 156.3 18.5 154 237-410 2-168 (614)
192 cd00882 Ras_like_GTPase Ras-li 99.6 1.2E-14 2.5E-19 124.6 15.7 150 240-404 1-156 (157)
193 TIGR01393 lepA GTP-binding pro 99.6 1.5E-14 3.3E-19 154.1 19.4 157 235-411 3-183 (595)
194 KOG0095 GTPase Rab30, small G 99.6 6E-15 1.3E-19 126.2 13.0 159 233-407 5-168 (213)
195 KOG0087 GTPase Rab11/YPT3, sma 99.6 5.3E-15 1.1E-19 133.9 13.2 158 233-407 12-175 (222)
196 cd04168 TetM_like Tet(M)-like 99.6 3.1E-14 6.8E-19 135.4 18.7 122 237-378 1-142 (237)
197 KOG1191 Mitochondrial GTPase [ 99.6 2.6E-15 5.6E-20 150.8 11.5 176 232-412 265-454 (531)
198 KOG0394 Ras-related GTPase [Ge 99.6 6.8E-15 1.5E-19 130.3 12.8 163 234-410 8-180 (210)
199 TIGR01394 TypA_BipA GTP-bindin 99.6 1.8E-14 4E-19 153.2 18.3 156 236-411 2-194 (594)
200 TIGR00491 aIF-2 translation in 99.6 1.7E-14 3.6E-19 153.0 17.1 154 235-408 4-216 (590)
201 PRK10218 GTP-binding protein; 99.6 3.8E-14 8.2E-19 150.8 19.8 158 234-411 4-198 (607)
202 CHL00071 tufA elongation facto 99.6 1.9E-14 4E-19 147.5 16.8 153 236-408 13-211 (409)
203 PTZ00132 GTP-binding nuclear p 99.6 5.1E-14 1.1E-18 131.6 17.8 153 236-410 10-170 (215)
204 TIGR03680 eif2g_arch translati 99.6 1.7E-14 3.6E-19 147.8 15.5 155 237-409 6-197 (406)
205 PRK12317 elongation factor 1-a 99.6 1.6E-14 3.4E-19 148.9 15.3 146 237-399 8-196 (425)
206 KOG0098 GTPase Rab2, small G p 99.6 2.1E-14 4.6E-19 127.5 13.7 153 236-407 7-167 (216)
207 PRK12736 elongation factor Tu; 99.6 3E-14 6.5E-19 145.3 16.7 154 236-409 13-202 (394)
208 cd01883 EF1_alpha Eukaryotic e 99.6 1.2E-14 2.6E-19 136.6 12.6 149 237-397 1-194 (219)
209 KOG0075 GTP-binding ADP-ribosy 99.6 9.9E-15 2.1E-19 124.7 10.7 156 237-409 22-183 (186)
210 KOG0080 GTPase Rab18, small G 99.6 2.6E-14 5.6E-19 123.8 13.3 157 236-409 12-175 (209)
211 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 7.8E-14 1.7E-18 128.6 17.4 166 237-412 2-188 (196)
212 PRK05433 GTP-binding protein L 99.6 8E-14 1.7E-18 148.8 19.8 159 233-411 5-187 (600)
213 PF10662 PduV-EutP: Ethanolami 99.6 3.8E-14 8.2E-19 123.1 13.7 138 236-404 2-142 (143)
214 PRK12735 elongation factor Tu; 99.6 3.1E-14 6.8E-19 145.2 15.5 153 236-408 13-203 (396)
215 cd04165 GTPBP1_like GTPBP1-lik 99.6 1E-13 2.2E-18 130.7 17.4 149 237-405 1-220 (224)
216 PRK04000 translation initiatio 99.6 4.2E-14 9.2E-19 144.8 15.5 157 236-410 10-203 (411)
217 KOG0079 GTP-binding protein H- 99.6 3.1E-14 6.8E-19 121.7 11.7 157 235-410 8-171 (198)
218 PRK00049 elongation factor Tu; 99.6 6.3E-14 1.4E-18 143.0 16.3 153 236-408 13-203 (396)
219 KOG0093 GTPase Rab3, small G p 99.6 6.5E-14 1.4E-18 119.6 13.2 165 235-416 21-191 (193)
220 cd01886 EF-G Elongation factor 99.6 7.7E-14 1.7E-18 135.1 15.5 135 237-391 1-158 (270)
221 PLN03127 Elongation factor Tu; 99.6 1.5E-13 3.3E-18 141.9 18.1 154 236-409 62-253 (447)
222 KOG0086 GTPase Rab4, small G p 99.5 1.2E-13 2.6E-18 118.7 13.4 170 234-419 8-183 (214)
223 TIGR00485 EF-Tu translation el 99.5 1.5E-13 3.3E-18 140.2 16.0 153 236-408 13-201 (394)
224 TIGR00483 EF-1_alpha translati 99.5 9.1E-14 2E-18 143.2 14.5 147 236-398 8-197 (426)
225 PLN03126 Elongation factor Tu; 99.5 3.3E-13 7.2E-18 140.2 17.6 140 235-394 81-248 (478)
226 KOG0070 GTP-binding ADP-ribosy 99.5 1E-13 2.2E-18 123.5 10.8 153 237-409 19-179 (181)
227 cd04104 p47_IIGP_like p47 (47- 99.5 2.8E-13 6.2E-18 125.1 14.4 157 237-414 3-190 (197)
228 PRK04004 translation initiatio 99.5 2.5E-13 5.4E-18 144.5 15.8 153 235-407 6-217 (586)
229 TIGR02034 CysN sulfate adenyly 99.5 3.7E-13 8.1E-18 137.8 15.3 143 237-398 2-187 (406)
230 PRK00741 prfC peptide chain re 99.5 1E-12 2.2E-17 138.3 18.5 117 232-368 7-145 (526)
231 PRK12739 elongation factor G; 99.5 8.1E-13 1.7E-17 143.8 17.7 116 233-368 6-139 (691)
232 cd04170 EF-G_bact Elongation f 99.5 1E-12 2.2E-17 127.2 16.5 143 237-400 1-165 (268)
233 cd04169 RF3 RF3 subfamily. Pe 99.5 1.3E-12 2.9E-17 126.4 17.0 125 236-380 3-151 (267)
234 PRK05506 bifunctional sulfate 99.5 3.6E-13 7.8E-18 145.3 14.4 143 237-398 26-211 (632)
235 PTZ00327 eukaryotic translatio 99.5 5.1E-13 1.1E-17 138.0 14.8 156 237-410 36-235 (460)
236 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.8E-12 3.9E-17 120.3 16.9 141 237-393 2-175 (202)
237 COG3596 Predicted GTPase [Gene 99.5 4.3E-13 9.4E-18 126.6 12.7 165 237-412 41-226 (296)
238 PRK05124 cysN sulfate adenylyl 99.5 7.5E-13 1.6E-17 137.8 15.8 147 235-400 27-217 (474)
239 cd04167 Snu114p Snu114p subfam 99.5 1.9E-12 4.1E-17 121.0 16.3 111 237-367 2-136 (213)
240 KOG0076 GTP-binding ADP-ribosy 99.5 4E-13 8.7E-18 118.1 10.8 160 235-410 17-189 (197)
241 PF08477 Miro: Miro-like prote 99.5 2.1E-13 4.5E-18 114.9 8.3 115 237-365 1-119 (119)
242 KOG0395 Ras-related GTPase [Ge 99.4 2.8E-12 6.1E-17 118.4 15.7 156 237-409 5-166 (196)
243 TIGR00484 EF-G translation elo 99.4 2.2E-12 4.7E-17 140.5 17.0 141 233-393 8-171 (689)
244 TIGR00503 prfC peptide chain r 99.4 4.6E-12 9.9E-17 133.3 18.7 117 232-368 8-146 (527)
245 PRK00007 elongation factor G; 99.4 2.5E-12 5.5E-17 140.0 17.3 116 233-368 8-141 (693)
246 KOG0462 Elongation factor-type 99.4 2.5E-12 5.4E-17 130.6 15.1 163 233-415 58-242 (650)
247 KOG0091 GTPase Rab39, small G 99.4 1.6E-12 3.6E-17 113.0 11.7 157 237-408 10-173 (213)
248 cd04105 SR_beta Signal recogni 99.4 3.3E-12 7.1E-17 118.7 14.7 118 236-369 1-124 (203)
249 PTZ00141 elongation factor 1- 99.4 2.4E-12 5.1E-17 133.2 14.5 149 237-398 9-203 (446)
250 PRK13351 elongation factor G; 99.4 3.9E-12 8.5E-17 138.6 16.9 116 234-369 7-140 (687)
251 cd01885 EF2 EF2 (for archaea a 99.4 1.1E-11 2.3E-16 116.7 17.2 111 237-367 2-138 (222)
252 KOG0071 GTP-binding ADP-ribosy 99.4 5.7E-12 1.2E-16 107.1 12.8 152 237-409 19-179 (180)
253 COG1100 GTPase SAR1 and relate 99.4 1.6E-11 3.4E-16 114.6 17.2 158 236-409 6-186 (219)
254 COG2229 Predicted GTPase [Gene 99.4 2.2E-11 4.9E-16 108.5 16.3 152 236-406 11-176 (187)
255 PLN00023 GTP-binding protein; 99.4 4.8E-12 1E-16 124.1 13.2 120 236-369 22-166 (334)
256 KOG0083 GTPase Rab26/Rab37, sm 99.4 1.2E-12 2.5E-17 110.3 6.4 155 240-411 2-163 (192)
257 TIGR02836 spore_IV_A stage IV 99.4 2.3E-11 4.9E-16 121.5 16.3 167 237-412 19-238 (492)
258 KOG1145 Mitochondrial translat 99.4 1.6E-11 3.4E-16 124.9 15.4 154 233-406 151-314 (683)
259 COG0532 InfB Translation initi 99.3 1.6E-11 3.4E-16 125.6 15.2 153 235-407 5-169 (509)
260 PRK13768 GTPase; Provisional 99.3 9.9E-12 2.1E-16 119.4 12.7 118 283-409 98-248 (253)
261 KOG0088 GTPase Rab21, small G 99.3 5.1E-12 1.1E-16 109.4 7.8 154 236-408 14-175 (218)
262 PLN00043 elongation factor 1-a 99.3 2.3E-11 5.1E-16 125.8 14.2 150 236-398 8-203 (447)
263 PRK12740 elongation factor G; 99.3 5.2E-11 1.1E-15 129.5 17.2 108 241-368 1-126 (668)
264 cd01882 BMS1 Bms1. Bms1 is an 99.3 6.5E-11 1.4E-15 111.7 15.2 133 233-393 37-181 (225)
265 PTZ00099 rab6; Provisional 99.3 8.5E-11 1.8E-15 106.7 15.3 120 275-411 20-145 (176)
266 KOG0097 GTPase Rab14, small G 99.3 4E-11 8.8E-16 101.9 11.9 159 234-412 10-178 (215)
267 cd01853 Toc34_like Toc34-like 99.3 3.7E-11 7.9E-16 115.0 13.1 128 233-368 29-163 (249)
268 KOG0081 GTPase Rab27, small G 99.3 1.8E-11 3.8E-16 106.1 9.6 153 238-407 12-180 (219)
269 COG0481 LepA Membrane GTPase L 99.3 6.8E-11 1.5E-15 118.6 13.3 162 232-413 6-191 (603)
270 TIGR00750 lao LAO/AO transport 99.2 7.4E-11 1.6E-15 116.1 13.3 101 281-408 126-238 (300)
271 COG5257 GCD11 Translation init 99.2 6E-11 1.3E-15 113.9 11.2 165 237-419 12-213 (415)
272 KOG0077 Vesicle coat complex C 99.2 4.3E-11 9.4E-16 104.6 8.8 153 234-406 19-191 (193)
273 PRK09435 membrane ATPase/prote 99.2 1.9E-10 4E-15 114.1 14.5 103 281-410 148-262 (332)
274 PRK10463 hydrogenase nickel in 99.2 1.4E-11 3.1E-16 119.2 6.3 56 351-406 227-287 (290)
275 COG3276 SelB Selenocysteine-sp 99.2 1.2E-10 2.7E-15 116.4 12.8 152 237-408 2-162 (447)
276 PF04548 AIG1: AIG1 family; I 99.2 3.9E-10 8.4E-15 105.5 15.1 166 237-413 2-191 (212)
277 KOG0074 GTP-binding ADP-ribosy 99.2 7.4E-11 1.6E-15 100.5 9.0 153 237-408 19-179 (185)
278 PF03029 ATP_bind_1: Conserved 99.2 1.1E-10 2.3E-15 111.1 10.5 116 283-407 92-236 (238)
279 PF09439 SRPRB: Signal recogni 99.2 1E-10 2.2E-15 106.0 9.9 117 236-369 4-127 (181)
280 KOG1532 GTPase XAB1, interacts 99.2 3.6E-10 7.7E-15 106.5 13.1 122 282-412 116-268 (366)
281 KOG0090 Signal recognition par 99.2 4E-10 8.6E-15 102.7 12.9 155 236-407 39-238 (238)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3.1E-10 6.7E-15 110.8 12.8 120 236-367 39-166 (313)
283 cd01850 CDC_Septin CDC/Septin. 99.2 8.5E-10 1.8E-14 107.3 15.9 141 237-390 6-184 (276)
284 COG4917 EutP Ethanolamine util 99.2 3E-10 6.5E-15 95.0 10.5 139 236-405 2-143 (148)
285 KOG0072 GTP-binding ADP-ribosy 99.1 1.8E-10 3.9E-15 98.4 8.7 153 237-409 20-180 (182)
286 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.7E-09 3.7E-14 102.1 16.1 157 237-403 1-171 (232)
287 KOG0461 Selenocysteine-specifi 99.1 9.7E-10 2.1E-14 106.4 14.5 164 237-420 9-205 (522)
288 KOG0393 Ras-related small GTPa 99.1 2.7E-10 5.9E-15 103.9 8.9 154 237-408 6-179 (198)
289 COG1217 TypA Predicted membran 99.1 1.8E-09 3.9E-14 108.3 14.8 159 234-412 4-199 (603)
290 TIGR00073 hypB hydrogenase acc 99.1 1.3E-09 2.7E-14 101.6 12.9 54 354-407 148-206 (207)
291 PF03308 ArgK: ArgK protein; 99.1 4.5E-10 9.8E-15 106.2 9.2 101 282-409 122-231 (266)
292 PRK07560 elongation factor EF- 99.1 2E-09 4.4E-14 118.0 15.6 114 234-367 19-152 (731)
293 COG5256 TEF1 Translation elong 99.1 1.2E-09 2.6E-14 108.6 11.9 151 237-399 9-202 (428)
294 PF00350 Dynamin_N: Dynamin fa 99.0 1.6E-09 3.4E-14 96.8 11.1 112 238-364 1-168 (168)
295 PRK14845 translation initiatio 99.0 5.3E-09 1.1E-13 116.8 17.3 154 231-408 461-673 (1049)
296 smart00053 DYNc Dynamin, GTPas 99.0 4.8E-09 1E-13 99.7 13.9 132 234-377 25-216 (240)
297 PLN00116 translation elongatio 99.0 2.2E-09 4.7E-14 119.3 13.3 114 234-367 18-163 (843)
298 TIGR00101 ureG urease accessor 99.0 6.2E-09 1.3E-13 96.5 14.0 54 354-407 137-195 (199)
299 PTZ00416 elongation factor 2; 99.0 2.6E-09 5.7E-14 118.5 13.3 114 234-367 18-157 (836)
300 COG1121 ZnuC ABC-type Mn/Zn tr 99.0 7.3E-10 1.6E-14 105.1 7.6 160 224-390 19-197 (254)
301 KOG3883 Ras family small GTPas 99.0 1.6E-08 3.6E-13 87.4 15.1 164 234-411 8-178 (198)
302 KOG4252 GTP-binding protein [S 99.0 4E-10 8.6E-15 99.7 4.9 156 235-409 20-182 (246)
303 PF05049 IIGP: Interferon-indu 99.0 3.9E-09 8.4E-14 105.7 12.6 157 237-414 37-224 (376)
304 COG2895 CysN GTPases - Sulfate 98.9 4E-09 8.7E-14 102.7 10.1 143 236-398 7-193 (431)
305 TIGR00490 aEF-2 translation el 98.9 3.6E-09 7.8E-14 115.9 10.8 115 234-368 18-152 (720)
306 COG1131 CcmA ABC-type multidru 98.9 1.6E-09 3.5E-14 106.2 7.2 159 225-401 21-205 (293)
307 COG4586 ABC-type uncharacteriz 98.9 1.3E-09 2.8E-14 103.2 5.9 162 225-404 40-228 (325)
308 COG1703 ArgK Putative periplas 98.9 1.6E-08 3.5E-13 97.1 13.4 102 282-410 144-256 (323)
309 COG1120 FepC ABC-type cobalami 98.9 3.4E-09 7.5E-14 101.0 8.9 159 225-390 18-197 (258)
310 TIGR00993 3a0901s04IAP86 chlor 98.9 1.3E-08 2.8E-13 107.2 13.1 125 236-368 119-250 (763)
311 COG0480 FusA Translation elong 98.9 2E-08 4.3E-13 108.3 14.9 128 233-380 8-156 (697)
312 KOG1144 Translation initiation 98.9 4.4E-09 9.6E-14 110.1 9.2 158 234-411 474-690 (1064)
313 COG4152 ABC-type uncharacteriz 98.9 7.3E-09 1.6E-13 96.7 9.0 169 219-406 12-203 (300)
314 COG1116 TauB ABC-type nitrate/ 98.9 5.9E-09 1.3E-13 98.0 8.0 157 226-402 20-197 (248)
315 COG1136 SalX ABC-type antimicr 98.8 1.3E-08 2.8E-13 95.2 9.7 149 226-390 22-201 (226)
316 COG4555 NatA ABC-type Na+ tran 98.8 3.1E-09 6.7E-14 96.5 5.3 159 225-403 18-203 (245)
317 PRK13537 nodulation ABC transp 98.8 7.3E-09 1.6E-13 102.3 7.7 160 225-401 23-206 (306)
318 cd03261 ABC_Org_Solvent_Resist 98.8 1.4E-08 3.1E-13 96.2 9.4 33 226-258 17-49 (235)
319 KOG0458 Elongation factor 1 al 98.8 2.5E-08 5.4E-13 102.8 11.5 154 234-399 176-373 (603)
320 cd03293 ABC_NrtD_SsuB_transpor 98.8 1.6E-08 3.5E-13 94.8 9.4 150 226-391 21-191 (220)
321 TIGR00960 3a0501s02 Type II (G 98.8 9.8E-09 2.1E-13 96.0 7.8 151 225-391 19-197 (216)
322 TIGR01188 drrA daunorubicin re 98.8 7.3E-09 1.6E-13 102.1 7.2 149 226-390 10-182 (302)
323 COG4108 PrfC Peptide chain rel 98.8 3.9E-08 8.4E-13 98.3 12.1 125 236-380 13-161 (528)
324 TIGR03522 GldA_ABC_ATP gliding 98.8 9.5E-09 2E-13 101.3 7.6 161 224-401 17-200 (301)
325 cd03259 ABC_Carb_Solutes_like 98.8 1.4E-08 3E-13 94.8 8.2 150 226-391 17-190 (213)
326 PRK13536 nodulation factor exp 98.8 1.2E-08 2.6E-13 102.2 8.1 150 225-390 57-230 (340)
327 cd03269 ABC_putative_ATPase Th 98.8 1.2E-08 2.7E-13 94.9 7.7 149 226-390 17-186 (210)
328 COG1135 AbcC ABC-type metal io 98.8 1E-08 2.2E-13 98.8 6.6 161 226-403 23-212 (339)
329 COG0378 HypB Ni2+-binding GTPa 98.8 3E-08 6.4E-13 89.9 9.0 75 315-406 120-199 (202)
330 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.8 2.5E-08 5.4E-13 93.3 9.0 34 225-258 20-53 (218)
331 TIGR02673 FtsE cell division A 98.8 1.5E-08 3.1E-13 94.6 7.1 34 225-258 18-51 (214)
332 cd03298 ABC_ThiQ_thiamine_tran 98.8 1.1E-08 2.4E-13 95.2 6.3 33 227-259 16-48 (211)
333 cd03263 ABC_subfamily_A The AB 98.8 2.6E-08 5.6E-13 93.4 8.7 150 225-390 18-190 (220)
334 TIGR01288 nodI ATP-binding ABC 98.8 1.6E-08 3.5E-13 99.7 7.3 150 225-390 20-193 (303)
335 cd03264 ABC_drug_resistance_li 98.7 2.5E-08 5.5E-13 92.9 8.1 148 226-390 17-187 (211)
336 TIGR01277 thiQ thiamine ABC tr 98.7 3.7E-08 8.1E-13 91.9 9.1 150 226-391 15-188 (213)
337 PRK11247 ssuB aliphatic sulfon 98.7 2.9E-08 6.2E-13 95.6 8.4 151 225-391 28-193 (257)
338 cd03226 ABC_cobalt_CbiO_domain 98.7 1.5E-08 3.3E-13 93.9 6.2 151 225-391 16-185 (205)
339 PRK11248 tauB taurine transpor 98.7 3.5E-08 7.5E-13 94.9 8.7 151 225-391 17-188 (255)
340 TIGR01184 ntrCD nitrate transp 98.7 1.7E-08 3.6E-13 95.5 6.3 149 227-391 3-174 (230)
341 COG0050 TufB GTPases - transla 98.7 1.6E-07 3.4E-12 89.7 12.7 161 233-413 10-206 (394)
342 cd03301 ABC_MalK_N The N-termi 98.7 3.5E-08 7.5E-13 92.0 8.3 34 225-258 16-49 (213)
343 cd03225 ABC_cobalt_CbiO_domain 98.7 2.3E-08 4.9E-13 93.1 7.0 33 226-258 18-50 (211)
344 TIGR01189 ccmA heme ABC export 98.7 4.6E-08 1E-12 90.3 8.9 152 225-392 16-187 (198)
345 cd04178 Nucleostemin_like Nucl 98.7 2.4E-08 5.1E-13 90.4 6.8 55 235-292 117-172 (172)
346 PRK10908 cell division protein 98.7 2.9E-08 6.2E-13 93.3 7.6 34 225-258 18-51 (222)
347 cd03216 ABC_Carb_Monos_I This 98.7 5.6E-08 1.2E-12 87.1 9.1 120 225-390 16-140 (163)
348 PRK13538 cytochrome c biogenes 98.7 3.8E-08 8.2E-13 91.3 8.1 34 225-258 17-50 (204)
349 PRK11432 fbpC ferric transport 98.7 4.9E-08 1.1E-12 98.1 9.5 150 226-391 23-196 (351)
350 cd03265 ABC_DrrA DrrA is the A 98.7 2.4E-08 5.2E-13 93.7 6.8 149 226-390 17-190 (220)
351 cd03262 ABC_HisP_GlnQ_permease 98.7 2.3E-08 4.9E-13 93.2 6.6 34 226-259 17-50 (213)
352 cd03292 ABC_FtsE_transporter F 98.7 3.3E-08 7.1E-13 92.2 7.7 34 225-258 17-50 (214)
353 COG1134 TagH ABC-type polysacc 98.7 1.5E-08 3.2E-13 94.9 5.1 161 226-403 44-217 (249)
354 PRK11650 ugpC glycerol-3-phosp 98.7 5.2E-08 1.1E-12 98.2 9.4 150 226-391 21-194 (356)
355 TIGR03411 urea_trans_UrtD urea 98.7 6.3E-08 1.4E-12 92.1 9.6 34 225-258 18-51 (242)
356 cd03258 ABC_MetN_methionine_tr 98.7 2.8E-08 6E-13 94.0 6.8 34 226-259 22-55 (233)
357 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.7 3.3E-08 7.2E-13 93.2 7.3 152 224-391 37-201 (224)
358 TIGR03864 PQQ_ABC_ATP ABC tran 98.7 7.3E-08 1.6E-12 91.4 9.7 33 226-258 18-50 (236)
359 TIGR02211 LolD_lipo_ex lipopro 98.7 7.1E-08 1.5E-12 90.4 9.5 33 226-258 22-54 (221)
360 cd03218 ABC_YhbG The ABC trans 98.7 3E-08 6.5E-13 93.7 7.0 33 226-258 17-49 (232)
361 PRK10584 putative ABC transpor 98.7 6.5E-08 1.4E-12 91.2 9.2 34 225-258 26-59 (228)
362 cd03266 ABC_NatA_sodium_export 98.7 2.4E-08 5.1E-13 93.5 6.2 33 226-258 22-54 (218)
363 TIGR01166 cbiO cobalt transpor 98.7 6.5E-08 1.4E-12 88.6 8.9 33 226-258 9-41 (190)
364 TIGR03608 L_ocin_972_ABC putat 98.7 8.1E-08 1.7E-12 89.0 9.5 34 225-258 14-47 (206)
365 PRK11629 lolD lipoprotein tran 98.7 8.3E-08 1.8E-12 90.8 9.7 34 225-258 25-58 (233)
366 PRK13546 teichoic acids export 98.7 3.6E-08 7.8E-13 95.4 7.3 149 226-390 41-201 (264)
367 PRK13543 cytochrome c biogenes 98.7 3.9E-08 8.4E-13 92.0 7.3 34 225-258 27-60 (214)
368 cd03219 ABC_Mj1267_LivG_branch 98.7 3.7E-08 8E-13 93.3 6.9 33 226-258 17-49 (236)
369 cd03296 ABC_CysA_sulfate_impor 98.7 6.3E-08 1.4E-12 92.0 8.4 34 225-258 18-51 (239)
370 TIGR03265 PhnT2 putative 2-ami 98.7 8.7E-08 1.9E-12 96.5 9.8 150 226-391 21-194 (353)
371 TIGR03258 PhnT 2-aminoethylpho 98.7 1.1E-07 2.4E-12 96.0 10.4 151 225-391 21-198 (362)
372 PRK11000 maltose/maltodextrin 98.7 9.1E-08 2E-12 96.9 9.9 150 226-391 20-193 (369)
373 PRK11124 artP arginine transpo 98.7 5.3E-08 1.1E-12 92.7 7.7 34 225-258 18-51 (242)
374 TIGR02142 modC_ABC molybdenum 98.7 8.7E-08 1.9E-12 96.6 9.6 149 227-391 15-191 (354)
375 cd03268 ABC_BcrA_bacitracin_re 98.7 3.9E-08 8.4E-13 91.4 6.6 34 225-258 16-49 (208)
376 PRK11831 putative ABC transpor 98.7 4.8E-08 1E-12 94.6 7.5 35 225-259 23-57 (269)
377 KOG1707 Predicted Ras related/ 98.7 7.4E-08 1.6E-12 99.3 8.9 155 237-408 11-175 (625)
378 cd03256 ABC_PhnC_transporter A 98.7 4.2E-08 9.2E-13 93.1 6.8 35 225-259 17-51 (241)
379 cd03297 ABC_ModC_molybdenum_tr 98.6 4.2E-08 9.2E-13 91.6 6.4 31 227-258 16-46 (214)
380 PRK11153 metN DL-methionine tr 98.6 5.5E-08 1.2E-12 97.6 7.6 150 226-391 22-200 (343)
381 cd03229 ABC_Class3 This class 98.6 7.6E-08 1.6E-12 87.4 7.8 132 225-390 16-159 (178)
382 PRK09536 btuD corrinoid ABC tr 98.6 4.8E-08 1E-12 99.8 7.1 150 225-390 19-197 (402)
383 TIGR00972 3a0107s01c2 phosphat 98.6 1.5E-07 3.2E-12 90.0 10.0 35 225-259 17-51 (247)
384 COG1119 ModF ABC-type molybden 98.6 1.1E-07 2.3E-12 89.2 8.7 155 226-393 48-234 (257)
385 TIGR02314 ABC_MetN D-methionin 98.6 1.3E-07 2.9E-12 94.7 10.0 151 225-391 21-200 (343)
386 KOG1954 Endocytosis/signaling 98.6 2.8E-07 6E-12 90.4 11.7 131 232-374 55-231 (532)
387 PRK10771 thiQ thiamine transpo 98.6 7.7E-08 1.7E-12 91.0 7.6 33 227-259 17-49 (232)
388 cd03224 ABC_TM1139_LivF_branch 98.6 4.4E-08 9.6E-13 91.8 6.0 34 225-258 16-49 (222)
389 cd03235 ABC_Metallic_Cations A 98.6 3.1E-08 6.6E-13 92.4 4.8 33 226-258 16-48 (213)
390 PRK10851 sulfate/thiosulfate t 98.6 1.3E-07 2.7E-12 95.3 9.5 151 225-391 18-196 (353)
391 PRK13541 cytochrome c biogenes 98.6 1E-07 2.2E-12 87.8 8.2 33 226-258 17-49 (195)
392 cd03214 ABC_Iron-Siderophores_ 98.6 5.5E-08 1.2E-12 88.4 6.3 137 225-391 15-157 (180)
393 PRK13644 cbiO cobalt transport 98.6 9.5E-08 2.1E-12 92.9 8.3 35 224-258 17-51 (274)
394 PRK13635 cbiO cobalt transport 98.6 8.2E-08 1.8E-12 93.6 7.9 152 224-391 22-200 (279)
395 cd03294 ABC_Pro_Gly_Bertaine T 98.6 7.8E-08 1.7E-12 93.2 7.7 35 225-259 40-74 (269)
396 cd03295 ABC_OpuCA_Osmoprotecti 98.6 1.3E-07 2.7E-12 90.1 8.9 34 225-258 17-50 (242)
397 PRK09544 znuC high-affinity zi 98.6 1.7E-07 3.6E-12 90.0 9.7 148 225-391 20-180 (251)
398 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.6 3.6E-07 7.9E-12 80.1 11.1 107 224-390 15-125 (144)
399 PRK10575 iron-hydroxamate tran 98.6 4.2E-08 9.2E-13 94.8 5.6 35 225-259 27-61 (265)
400 PRK11264 putative amino-acid A 98.6 9.7E-08 2.1E-12 91.3 8.0 34 225-258 19-52 (250)
401 TIGR03005 ectoine_ehuA ectoine 98.6 1.3E-07 2.8E-12 90.6 8.9 34 225-258 16-49 (252)
402 TIGR02315 ABC_phnC phosphonate 98.6 5.5E-08 1.2E-12 92.5 6.2 34 226-259 19-52 (243)
403 TIGR01186 proV glycine betaine 98.6 2.1E-07 4.5E-12 93.9 10.6 151 225-391 9-189 (363)
404 PRK13650 cbiO cobalt transport 98.6 9.9E-08 2.2E-12 93.0 8.1 149 225-391 23-200 (279)
405 PRK11607 potG putrescine trans 98.6 1.7E-07 3.7E-12 95.1 10.0 150 226-391 36-209 (377)
406 PRK13539 cytochrome c biogenes 98.6 1.4E-07 3.1E-12 87.6 8.8 34 225-258 18-51 (207)
407 PRK13647 cbiO cobalt transport 98.6 1.3E-07 2.9E-12 91.8 8.7 151 225-391 21-197 (274)
408 PRK09493 glnQ glutamine ABC tr 98.6 8.5E-08 1.8E-12 91.2 7.2 34 225-258 17-50 (240)
409 PRK10070 glycine betaine trans 98.6 1.9E-07 4.1E-12 95.4 10.1 151 225-391 44-224 (400)
410 PRK09452 potA putrescine/sperm 98.6 1.7E-07 3.7E-12 95.0 9.8 150 226-391 31-204 (375)
411 cd01858 NGP_1 NGP-1. Autoanti 98.6 7E-08 1.5E-12 85.7 6.2 53 237-292 104-157 (157)
412 cd03231 ABC_CcmA_heme_exporter 98.6 6.6E-08 1.4E-12 89.5 6.1 34 226-259 17-50 (201)
413 PRK13646 cbiO cobalt transport 98.6 1.4E-07 3.1E-12 92.2 8.6 151 224-390 22-204 (286)
414 PRK11144 modC molybdate transp 98.6 1.6E-07 3.4E-12 94.6 9.2 150 226-391 15-188 (352)
415 cd03260 ABC_PstB_phosphate_tra 98.6 9.2E-08 2E-12 90.1 7.0 35 225-259 16-50 (227)
416 cd03230 ABC_DR_subfamily_A Thi 98.6 1.9E-07 4.1E-12 84.4 8.6 129 225-390 16-153 (173)
417 PRK11300 livG leucine/isoleuci 98.6 1E-07 2.2E-12 91.4 7.2 34 225-258 21-54 (255)
418 PRK13641 cbiO cobalt transport 98.6 7E-08 1.5E-12 94.4 6.1 34 225-258 23-56 (287)
419 TIGR00968 3a0106s01 sulfate AB 98.6 2.2E-07 4.8E-12 88.3 9.3 35 224-258 15-49 (237)
420 cd03233 ABC_PDR_domain1 The pl 98.6 2.1E-07 4.5E-12 86.3 8.9 139 225-392 23-179 (202)
421 TIGR03873 F420-0_ABC_ATP propo 98.6 9.3E-08 2E-12 91.9 6.7 34 225-258 17-50 (256)
422 PRK15177 Vi polysaccharide exp 98.6 1.1E-07 2.5E-12 88.9 7.1 33 226-258 4-36 (213)
423 PRK13648 cbiO cobalt transport 98.6 2.3E-07 4.9E-12 89.9 9.4 34 225-258 25-58 (269)
424 PF00735 Septin: Septin; Inte 98.6 6.6E-07 1.4E-11 87.2 12.6 123 237-372 6-160 (281)
425 PRK13637 cbiO cobalt transport 98.6 1.1E-07 2.3E-12 93.2 7.1 34 225-258 23-56 (287)
426 TIGR03740 galliderm_ABC gallid 98.6 1E-07 2.2E-12 89.6 6.7 34 225-258 16-49 (223)
427 PRK13545 tagH teichoic acids e 98.6 1E-07 2.2E-12 99.5 7.3 150 226-391 41-202 (549)
428 cd03247 ABCC_cytochrome_bd The 98.6 5.8E-07 1.2E-11 81.5 11.4 131 224-391 17-156 (178)
429 cd03213 ABCG_EPDR ABCG transpo 98.6 2.4E-07 5.1E-12 85.4 9.0 131 225-391 25-170 (194)
430 PRK10253 iron-enterobactin tra 98.6 1.3E-07 2.9E-12 91.3 7.6 34 225-258 23-56 (265)
431 TIGR03410 urea_trans_UrtE urea 98.6 1.1E-07 2.3E-12 89.8 6.7 33 226-258 17-49 (230)
432 cd03267 ABC_NatA_like Similar 98.6 2.1E-07 4.6E-12 88.4 8.8 34 225-258 37-70 (236)
433 PRK13652 cbiO cobalt transport 98.6 1.4E-07 2.9E-12 91.9 7.5 34 225-258 20-53 (277)
434 TIGR03415 ABC_choXWV_ATP choli 98.6 3E-07 6.4E-12 93.3 10.2 151 225-391 40-224 (382)
435 COG4604 CeuD ABC-type enteroch 98.6 1.5E-07 3.2E-12 85.5 7.0 99 226-324 18-130 (252)
436 PRK10895 lipopolysaccharide AB 98.6 1E-07 2.3E-12 90.6 6.5 34 225-258 19-52 (241)
437 cd01855 YqeH YqeH. YqeH is an 98.6 7.5E-08 1.6E-12 88.2 5.3 54 236-292 128-190 (190)
438 PRK13540 cytochrome c biogenes 98.6 2.2E-07 4.7E-12 85.9 8.4 35 224-258 16-50 (200)
439 PRK13634 cbiO cobalt transport 98.6 2.2E-07 4.7E-12 91.1 8.9 34 225-258 23-56 (290)
440 COG3839 MalK ABC-type sugar tr 98.6 2E-07 4.3E-12 92.3 8.5 152 224-391 18-193 (338)
441 PRK13636 cbiO cobalt transport 98.6 2E-07 4.4E-12 91.0 8.5 34 225-258 22-55 (283)
442 cd03300 ABC_PotA_N PotA is an 98.6 3E-07 6.5E-12 87.0 9.4 151 225-391 16-190 (232)
443 PRK13642 cbiO cobalt transport 98.6 2E-07 4.2E-12 90.8 8.3 35 225-259 23-57 (277)
444 PRK11231 fecE iron-dicitrate t 98.5 1.2E-07 2.6E-12 91.1 6.6 34 225-258 18-51 (255)
445 cd01859 MJ1464 MJ1464. This f 98.5 5.3E-07 1.1E-11 79.8 10.1 90 306-409 5-97 (156)
446 PRK13548 hmuV hemin importer A 98.5 1.5E-07 3.3E-12 90.6 7.1 34 225-258 18-51 (258)
447 KOG2486 Predicted GTPase [Gene 98.5 3.5E-07 7.6E-12 86.8 9.3 157 234-407 135-315 (320)
448 cd01858 NGP_1 NGP-1. Autoanti 98.5 4.4E-07 9.5E-12 80.6 9.5 92 306-408 2-95 (157)
449 PRK14247 phosphate ABC transpo 98.5 4.8E-07 1E-11 86.5 10.5 34 226-259 20-53 (250)
450 cd03228 ABCC_MRP_Like The MRP 98.5 5.2E-07 1.1E-11 81.3 10.1 130 226-391 19-154 (171)
451 PRK10619 histidine/lysine/argi 98.5 2.7E-07 5.8E-12 88.7 8.7 35 225-259 21-55 (257)
452 COG1126 GlnQ ABC-type polar am 98.5 2.8E-07 6.1E-12 84.8 8.1 151 226-392 19-196 (240)
453 PRK10762 D-ribose transporter 98.5 1.4E-07 3.1E-12 99.3 7.1 33 226-258 21-53 (501)
454 COG1124 DppF ABC-type dipeptid 98.5 3.1E-07 6.6E-12 86.0 8.4 170 226-404 24-213 (252)
455 COG3638 ABC-type phosphate/pho 98.5 4.7E-07 1E-11 84.4 9.5 46 225-281 20-65 (258)
456 PRK14250 phosphate ABC transpo 98.5 2.3E-07 4.9E-12 88.4 7.8 34 225-258 19-52 (241)
457 PRK13638 cbiO cobalt transport 98.5 1.2E-07 2.6E-12 91.9 6.0 33 226-258 18-50 (271)
458 cd03299 ABC_ModC_like Archeal 98.5 4.5E-07 9.7E-12 86.0 9.6 34 225-258 15-48 (235)
459 cd03215 ABC_Carb_Monos_II This 98.5 3.3E-07 7.2E-12 83.5 8.4 134 225-390 16-162 (182)
460 cd01849 YlqF_related_GTPase Yl 98.5 2E-07 4.3E-12 82.7 6.7 56 234-292 99-155 (155)
461 COG1122 CbiO ABC-type cobalt t 98.5 1.5E-07 3.3E-12 89.2 6.2 158 226-390 21-197 (235)
462 cd03234 ABCG_White The White s 98.5 2.7E-07 5.8E-12 87.0 7.9 34 226-259 24-57 (226)
463 PRK13639 cbiO cobalt transport 98.5 2.1E-07 4.7E-12 90.4 7.4 36 224-259 17-52 (275)
464 PRK15439 autoinducer 2 ABC tra 98.5 1.7E-07 3.7E-12 99.0 7.2 150 225-390 27-198 (510)
465 PRK10744 pstB phosphate transp 98.5 3.8E-07 8.1E-12 87.9 8.9 34 225-258 29-62 (260)
466 PRK11701 phnK phosphonate C-P 98.5 4.2E-07 9.1E-12 87.4 9.2 35 225-259 22-56 (258)
467 cd03246 ABCC_Protease_Secretio 98.5 8.3E-07 1.8E-11 80.2 10.5 131 225-391 18-155 (173)
468 PRK14259 phosphate ABC transpo 98.5 6E-07 1.3E-11 87.0 10.2 34 225-258 29-62 (269)
469 KOG0466 Translation initiation 98.5 2.2E-07 4.8E-12 89.0 6.8 123 282-422 125-255 (466)
470 TIGR02324 CP_lyasePhnL phospho 98.5 2.8E-07 6E-12 86.6 7.6 35 225-259 24-58 (224)
471 PRK13651 cobalt transporter AT 98.5 1.8E-07 3.8E-12 92.4 6.5 35 225-259 23-57 (305)
472 COG0411 LivG ABC-type branched 98.5 1.2E-07 2.5E-12 88.8 4.9 156 220-391 15-209 (250)
473 cd03237 ABC_RNaseL_inhibitor_d 98.5 3.1E-07 6.8E-12 87.9 8.0 143 232-391 22-175 (246)
474 cd00267 ABC_ATPase ABC (ATP-bi 98.5 4.9E-07 1.1E-11 80.2 8.7 120 225-391 15-139 (157)
475 PRK14235 phosphate transporter 98.5 6.5E-07 1.4E-11 86.6 10.3 34 226-259 36-69 (267)
476 PRK14241 phosphate transporter 98.5 5.8E-07 1.3E-11 86.5 9.8 33 226-258 21-53 (258)
477 cd03250 ABCC_MRP_domain1 Domai 98.5 4.9E-07 1.1E-11 83.7 9.0 150 225-391 21-187 (204)
478 PRK15056 manganese/iron transp 98.5 5.4E-07 1.2E-11 87.4 9.3 34 225-258 23-56 (272)
479 cd03251 ABCC_MsbA MsbA is an e 98.5 1.1E-06 2.3E-11 83.2 11.0 35 225-259 18-52 (234)
480 PRK14268 phosphate ABC transpo 98.5 7.9E-07 1.7E-11 85.5 10.2 35 225-259 28-62 (258)
481 COG4988 CydD ABC-type transpor 98.5 1.1E-06 2.3E-11 91.5 11.7 150 225-391 337-514 (559)
482 TIGR02323 CP_lyasePhnK phospho 98.5 4.9E-07 1.1E-11 86.6 8.8 35 225-259 19-53 (253)
483 TIGR02982 heterocyst_DevA ABC 98.5 2.8E-07 6E-12 86.5 6.8 34 225-258 21-54 (220)
484 PRK14267 phosphate ABC transpo 98.5 1.2E-06 2.5E-11 84.0 11.2 34 225-258 20-53 (253)
485 PRK14254 phosphate ABC transpo 98.5 6.8E-07 1.5E-11 87.4 9.8 35 225-259 55-89 (285)
486 COG1129 MglA ABC-type sugar tr 98.5 1.2E-07 2.5E-12 98.0 4.5 45 226-281 25-69 (500)
487 cd03257 ABC_NikE_OppD_transpor 98.5 4.8E-07 1E-11 85.1 8.4 34 226-259 22-55 (228)
488 TIGR02868 CydC thiol reductant 98.5 3.2E-07 6.9E-12 97.3 8.0 151 225-391 351-528 (529)
489 PRK15079 oligopeptide ABC tran 98.5 4.9E-07 1.1E-11 90.3 8.8 34 226-259 38-71 (331)
490 PRK09984 phosphonate/organopho 98.5 4.3E-07 9.3E-12 87.5 8.2 35 225-259 20-54 (262)
491 TIGR01978 sufC FeS assembly AT 98.5 8.1E-07 1.7E-11 84.4 9.9 33 226-258 17-49 (243)
492 PRK13643 cbiO cobalt transport 98.5 3.1E-07 6.8E-12 89.9 7.2 34 225-258 22-55 (288)
493 cd03223 ABCD_peroxisomal_ALDP 98.5 2.3E-06 4.9E-11 76.9 12.2 125 225-391 17-147 (166)
494 PRK13640 cbiO cobalt transport 98.5 3.1E-07 6.7E-12 89.7 7.1 36 224-259 22-57 (282)
495 PRK13649 cbiO cobalt transport 98.5 3.5E-07 7.6E-12 89.1 7.4 34 225-258 23-56 (280)
496 PRK09700 D-allose transporter 98.5 2.5E-07 5.4E-12 97.7 6.8 35 225-259 21-55 (510)
497 KOG0096 GTPase Ran/TC4/GSP1 (n 98.5 3.6E-07 7.8E-12 82.0 6.7 157 235-410 10-171 (216)
498 PRK14251 phosphate ABC transpo 98.5 7.6E-07 1.6E-11 85.2 9.5 34 226-259 21-54 (251)
499 TIGR02769 nickel_nikE nickel i 98.5 3.5E-07 7.6E-12 88.4 7.3 33 226-258 28-60 (265)
500 PRK14256 phosphate ABC transpo 98.5 1.1E-06 2.3E-11 84.3 10.5 35 225-259 20-54 (252)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=5.1e-77 Score=569.44 Aligned_cols=302 Identities=45% Similarity=0.693 Sum_probs=270.1
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCcccccccc--cEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSLQ--HHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~~--~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++.+|.+++ +||+|+||+||++++|+|++|+|++|+||+||+|+|.
T Consensus 28 ~vp~GGPdGGdGG~GGsV~~~ad~~l~TL~d~r~~~~f~A~~G~~G~~~~~~G~~G~Dl~i~VP~GT~v~d~-------- 99 (369)
T COG0536 28 FVPKGGPDGGDGGRGGSVIFEADENLNTLIDFRYKKHFKAENGENGMGRNRTGAKGKDLVIKVPVGTVVRDE-------- 99 (369)
T ss_pred cCccCCCCCCCCCCCceEEEEEcCCcccHhhhccceEEEccCCCCCCCCCCCCCCCCceEEEcCCCCEEEeC--------
Confidence 789999999999999999999999988888774 9999999999999999999999999999999999973
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+|+ .++
T Consensus 100 --------------------------~t~------------------------------------------------e~i 105 (369)
T COG0536 100 --------------------------DTG------------------------------------------------ELL 105 (369)
T ss_pred --------------------------CCC------------------------------------------------eEe
Confidence 122 278
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
+||+.+++++++|+||+||+||++|++++|+ .+.+ .++|++|+++++.||++.+++|||
T Consensus 106 ~Dl~~~gq~~~~akGG~GG~GN~~Fks~~nr-----AP~~----------------a~~G~~Ge~r~v~LELKllADVGL 164 (369)
T COG0536 106 ADLTEHGQRFLVAKGGRGGLGNAHFKSSVNR-----APRF----------------ATPGEPGEERDLRLELKLLADVGL 164 (369)
T ss_pred hhhccCCcEEEEEcCCCCCccchhhcCcccC-----Cccc----------------CCCCCCCceEEEEEEEeeeccccc
Confidence 9999999999999999999999999999883 2222 258999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||+|||||||||+++|.++|++++|||||+.|+.|++.+.+ .+|+++|+||+|++|+++.+|++.||+|++||.+++||
T Consensus 165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hv 244 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHV 244 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEE
Confidence 99999999999999999999999999999999999999854 77999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcC---CCc-EEEEecccCcC
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQ---GVP-IYPVCAVLEEG 395 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~---~~~-ii~vSA~~g~g 395 (423)
+|++... ..+|.++++.+..||.+|++.|.++|.|||+||+|+...++.++.+++.+. .+. .++|||.+++|
T Consensus 245 iD~s~~~----~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 245 IDLSPID----GRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred EecCccc----CCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 9999632 257899999999999999999999999999999997766655555554441 222 23399999999
Q ss_pred HHHHHHHHHHHhcccc
Q 014494 396 VPELKVGLRMLVNGEK 411 (423)
Q Consensus 396 i~eL~~~i~~~l~~~~ 411 (423)
+++|+..+.+++.+..
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.4e-67 Score=522.89 Aligned_cols=299 Identities=44% Similarity=0.685 Sum_probs=264.8
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++.+|.++ +++|+|+||++|++++++|++|+|++|+||+||+|++.
T Consensus 27 ~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~-------- 98 (335)
T PRK12299 27 FIPFGGPDGGDGGRGGSVILEADENLNTLIDFRYKRHFKAENGENGMGRNRTGKSGKDLVLKVPVGTQIYDA-------- 98 (335)
T ss_pred cccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEECCCCCCCCCCCCCCCCCCceEEEeCCCCEEEEC--------
Confidence 78999999999999999999999999999887 57999999999999999999999999999999999962
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+++ .++
T Consensus 99 --------------------------~~~------------------------------------------------~~~ 104 (335)
T PRK12299 99 --------------------------DTG------------------------------------------------ELI 104 (335)
T ss_pred --------------------------CCC------------------------------------------------cEE
Confidence 111 267
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
+||..+++.+++|+||.||+||.+|++++++ .|+. .+.|++|+++++.||++.+++|+|
T Consensus 105 ~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~----~p~~-----------------~~~g~~g~~~~~~lelk~~adVgl 163 (335)
T PRK12299 105 ADLTEHGQRFLVAKGGKGGLGNAHFKSSTNR----APRY-----------------ATPGEPGEERWLRLELKLLADVGL 163 (335)
T ss_pred EEcCCCCcEEEEecCCCCcCCchhhccccCC----CCcc-----------------ccCCCCCcEEEEEEEEcccCCEEE
Confidence 8999999999999999999999999998873 2222 247999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||+|||||||||++|+++++.+++|||||+.|+.+.+.+. +.++.++||||++++++++.++++.|++|+++|+++++|
T Consensus 164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~V 243 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHL 243 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEE
Confidence 9999999999999999999999999999999999999984 478999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHH-HHHHHc--CCCcEEEEecccCcCH
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE-ELERRV--QGVPIYPVCAVLEEGV 396 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~-~l~~~~--~~~~ii~vSA~~g~gi 396 (423)
+|+++. ++++.+..|..+|..|.+.+.++|.|+|+||+|+....+... .+.... .+.++++|||++++|+
T Consensus 244 iD~s~~-------~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 244 VDIEAV-------DPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred EcCCCC-------CCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 999862 468889999999999988788999999999999976543322 122111 2468999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 014494 397 PELKVGLRMLVNGEK 411 (423)
Q Consensus 397 ~eL~~~i~~~l~~~~ 411 (423)
++|+++|.+.+.+.+
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887644
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1e-66 Score=529.00 Aligned_cols=302 Identities=42% Similarity=0.681 Sum_probs=270.1
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++.+|.++ +++|+|+||+||++++++|++|+|++|+||+||+|++.
T Consensus 27 ~~~~ggp~gG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~g~~~~~~G~~g~d~~i~vP~Gt~v~~~-------- 98 (424)
T PRK12297 27 YVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRYKRHFKAENGENGMGKNMHGRNGEDLIIKVPVGTVVKDA-------- 98 (424)
T ss_pred cccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEEcCCCCCCCCCCCCCCCCCeeEEecCCCCEEEEC--------
Confidence 78999999999999999999999998888887 68999999999999999999999999999999999962
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+++ .++
T Consensus 99 --------------------------~~~------------------------------------------------~~~ 104 (424)
T PRK12297 99 --------------------------ETG------------------------------------------------EVI 104 (424)
T ss_pred --------------------------CCC------------------------------------------------cEE
Confidence 111 167
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
++|..+++.+++|+||+||+||.+|++++++ .+.+ .+.|.+|+++++.||++.+++|+|
T Consensus 105 ~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~-----~p~~----------------~~~G~~ge~~~~~lelk~~adVgl 163 (424)
T PRK12297 105 ADLVEPGQEVVVAKGGRGGRGNAHFATSTNQ-----APRI----------------AENGEPGEERELRLELKLLADVGL 163 (424)
T ss_pred eeeccCCcEEEEECCCCCCcCchhhcCCCCC-----CCCc----------------CCCCCCCeEeEEEEeecccCcEEE
Confidence 9999999999999999999999999998873 2221 147999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||+|||||||||++|+++++.+++|||||+.|+.+.+.++ +.++.++||||++++++.+.++++.|++|+++|++++||
T Consensus 164 VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~V 243 (424)
T PRK12297 164 VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHV 243 (424)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEE
Confidence 9999999999999999999999999999999999999988 689999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
+|+++.. ..++.+.+..+..+|..|.+.+..+|.|||+||+|+....+.++.+.+.+. .+++++||++++|+++|
T Consensus 244 ID~s~~~----~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL 318 (424)
T PRK12297 244 IDMSGSE----GRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PKVFPISALTGQGLDEL 318 (424)
T ss_pred EeCCccc----cCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-CcEEEEeCCCCCCHHHH
Confidence 9998521 236888899999999999888889999999999998766555666666654 68999999999999999
Q ss_pred HHHHHHHhccccC
Q 014494 400 KVGLRMLVNGEKS 412 (423)
Q Consensus 400 ~~~i~~~l~~~~~ 412 (423)
+++|.+.+.+.+.
T Consensus 319 ~~~L~~~l~~~~~ 331 (424)
T PRK12297 319 LYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHhCcc
Confidence 9999998876543
No 4
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=4.7e-67 Score=494.91 Aligned_cols=297 Identities=50% Similarity=0.730 Sum_probs=269.9
Q ss_pred cccCCCCCCCCCCCCCcEEEEec-CCcccccccccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCccc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECS-PSVWDFRSLQHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMVD 81 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~-~~~~~l~~~~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~~ 81 (423)
+++.|||||||||+||+|||+|+ ..+.+|++....++|++|++|++.+++|++|++.+|+||+||+|+++..
T Consensus 66 ~~~~g~PdGGdGG~GG~V~~~a~~~~~~~l~~~~s~~~a~~Ge~~~s~~~~g~~ak~~~i~VP~Gt~v~d~~~------- 138 (366)
T KOG1489|consen 66 RRPRGGPDGGDGGNGGHVYFVAKPGAFKQLSHVGSLIQAPNGENGKSKMCHGSNAKHSEIRVPVGTVVKDIEQ------- 138 (366)
T ss_pred ccccCCCCCCCCCCCceEEEEeCcccccccccCCceEEccCCCcCccccccCCCcceEEEecCCccEEeeccc-------
Confidence 57899999999999999999999 6788888888999999999999999999999999999999999996310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhhc
Q 014494 82 NRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNIA 161 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~~ 161 (423)
.++++
T Consensus 139 ---------------------------------------------------------------------------~~~v~ 143 (366)
T KOG1489|consen 139 ---------------------------------------------------------------------------GKLVA 143 (366)
T ss_pred ---------------------------------------------------------------------------chhHH
Confidence 13778
Q ss_pred ccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEEE
Q 014494 162 ELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLV 241 (423)
Q Consensus 162 ~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~LV 241 (423)
+|+..++++++|+||.||+||.+|.+..++ .|++. ..|..|+++.+.||++.+++||||
T Consensus 144 el~~~~~~~i~arGG~GG~gn~~fls~~~r----~p~~~-----------------~~G~~G~e~~~~lELKsiadvGLV 202 (366)
T KOG1489|consen 144 ELTKEGDRVIAARGGEGGKGNKFFLSNENR----SPKFS-----------------KPGLNGEERVIELELKSIADVGLV 202 (366)
T ss_pred HhccCCcEEEEeecCCCCccceeecccccc----Ccccc-----------------cCCCCCceEEEEEEeeeeccccee
Confidence 999999999999999999999999886542 23322 479999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-eEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEE
Q 014494 242 GMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320 (423)
Q Consensus 242 G~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~Vv 320 (423)
|+|||||||||++|+.++|++++|+|||+.|++|.+.+++. ++.++|+||+|++||.+++|++.|++|+++|+.++||+
T Consensus 203 G~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVv 282 (366)
T KOG1489|consen 203 GFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVV 282 (366)
T ss_pred cCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999999994 49999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 321 DLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 321 D~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
|++.... ..+|.+++.++.||+.|...|.++|.+||+||+|+++.+ ..++.|++.+++..||++||++++|+++|
T Consensus 283 D~s~~~~----~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 283 DLSGKQL----RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred ECCCccc----CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHH
Confidence 9998533 589999999999999999999999999999999996544 44588888887667999999999999999
Q ss_pred HHHHHHH
Q 014494 400 KVGLRML 406 (423)
Q Consensus 400 ~~~i~~~ 406 (423)
++.|.+.
T Consensus 359 l~~lr~~ 365 (366)
T KOG1489|consen 359 LNGLREL 365 (366)
T ss_pred HHHHhhc
Confidence 9998765
No 5
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.2e-66 Score=534.48 Aligned_cols=302 Identities=46% Similarity=0.688 Sum_probs=266.7
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|+|.|||||||||+||||||++++++.+|.++ ++||+|+||+||++++++|++|+|++|+||+||+|++.+
T Consensus 29 ~~~~ggpdGG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~G~~~~~~G~~g~d~~i~VP~Gt~v~~~~------- 101 (500)
T PRK12296 29 FKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFHFRPHRKATNGKPGMGDNRDGAAGEDLVLPVPDGTVVLDED------- 101 (500)
T ss_pred cccCCCCCCCCCCCCCEEEEEECCCcCchHHhccCceEECCCCCCCCCCCCCCCCCCceEEecCCCcEEEcCC-------
Confidence 89999999999999999999999988888765 679999999999999999999999999999999999521
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+ .++
T Consensus 102 ----------------------------~------------------------------------------------~~~ 105 (500)
T PRK12296 102 ----------------------------G------------------------------------------------EVL 105 (500)
T ss_pred ----------------------------C------------------------------------------------cEE
Confidence 1 267
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
+||..+++.+++|+||+||+||.+|++++++ .|++. ..|++|+++++.|||+.+++|+|
T Consensus 106 ~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~----~p~~~-----------------~~G~~Ge~~~~~leLk~~adV~L 164 (500)
T PRK12296 106 ADLVGAGTRFVAAAGGRGGLGNAALASKARK----APGFA-----------------LLGEPGEERDLVLELKSVADVGL 164 (500)
T ss_pred eeeccCCCEEEEEccCCCcCCCcccCCccCC----CCccc-----------------cCCCCCceEEEEEEecccceEEE
Confidence 9999999999999999999999999998873 22222 47999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~Vv 320 (423)
||+||||||||||+|+++++.+++|||||+.|+.+.+.+.+.+|+++||||++++++++.+++..|++|+++|++|+||+
T Consensus 165 VG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VV 244 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVV 244 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcHHHHHHHHHHHHhhhc---------ccCCCCeEEEEeCCCcCChHHHHHHHHHHc--CCCcEEEEe
Q 014494 321 DLASGLDGRKGIKPWKQLRDLIIELEHHQE---------GLSDRPSLVVANKIDEDGAEEVYEELERRV--QGVPIYPVC 389 (423)
Q Consensus 321 D~s~~~~~~~~~~~~~~~~~l~~eL~~~~~---------~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~--~~~~ii~vS 389 (423)
|+++.. ...++..++..+..+|..|.+ .+..+|.|||+||+|++...+..+.+...+ .+.++++||
T Consensus 245 D~s~~e---~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~IS 321 (500)
T PRK12296 245 DCATLE---PGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVS 321 (500)
T ss_pred CCcccc---cccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEE
Confidence 998521 113577788888889988875 467899999999999987655444444333 256899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|++++|+++|+.+|.+.+...+
T Consensus 322 A~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 322 AASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 6
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=1.9e-65 Score=507.31 Aligned_cols=297 Identities=45% Similarity=0.717 Sum_probs=263.5
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++.+|.++ +++|+|+||++|++++++|++|+|++|+||+||+|++.
T Consensus 26 ~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~-------- 97 (329)
T TIGR02729 26 YVPKGGPDGGDGGRGGSVILEADENLNTLLDFRYQRHFKAENGENGMGKNRTGKNGEDLVIKVPVGTVVYDA-------- 97 (329)
T ss_pred cccCCCCCCCCCCCCCEEEEEECCCcChhhhccCCcEEEcCCCCCCCCCCCCCCCCCceEEEeCCCCEEEEC--------
Confidence 67899999999999999999999999999887 67999999999999999999999999999999999962
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+++ .++
T Consensus 98 --------------------------~~~------------------------------------------------~~~ 103 (329)
T TIGR02729 98 --------------------------DTG------------------------------------------------ELL 103 (329)
T ss_pred --------------------------CCC------------------------------------------------cEE
Confidence 111 167
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
++|..+++.+++|+||.||+||.+|++++++ .|+. .+.|++|+++++.||++.+++|+|
T Consensus 104 ~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~----~p~~-----------------~~~g~~g~~~~~~lelk~~adV~l 162 (329)
T TIGR02729 104 ADLTEPGQRFVVAKGGRGGLGNAHFKSSTNR----APRF-----------------ATPGEPGEERWLRLELKLLADVGL 162 (329)
T ss_pred eEeccCCcEEEecCCCCCCCCcccccCccCC----CCcc-----------------cCCCCCCcEEEEEEEeeccccEEE
Confidence 8999999999999999999999999998873 1221 247999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||+|||||||||++|+++++.+++|||||+.|+.+.+.+++ .++.++||||++++++.+.++++.|++|+++|+++++|
T Consensus 163 vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~V 242 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHL 242 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEE
Confidence 99999999999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH---HHHHHHHcCCCcEEEEecccCcCH
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEELERRVQGVPIYPVCAVLEEGV 396 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~---~~~l~~~~~~~~ii~vSA~~g~gi 396 (423)
+|+++.. ..++++++..+..+|..|.+.+.++|.|+|+||+|+...... .+.+.+.+ +.++++|||++++|+
T Consensus 243 vD~s~~~----~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~-~~~vi~iSAktg~GI 317 (329)
T TIGR02729 243 IDISPLD----GRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKAL-GKPVFPISALTGEGL 317 (329)
T ss_pred EcCcccc----ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHc-CCcEEEEEccCCcCH
Confidence 9998621 126788999999999988877889999999999999865432 23333333 468999999999999
Q ss_pred HHHHHHHHHHh
Q 014494 397 PELKVGLRMLV 407 (423)
Q Consensus 397 ~eL~~~i~~~l 407 (423)
++|+++|.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=5.3e-65 Score=513.74 Aligned_cols=301 Identities=42% Similarity=0.623 Sum_probs=264.4
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++++|.++ +++|+|+||++|++++++|++|+|++|+||+||+|++.
T Consensus 28 ~~~~ggp~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~g~~g~d~~i~vP~gt~v~~~-------- 99 (390)
T PRK12298 28 YIPKGGPDGGDGGDGGDVYLEADENLNTLIDYRFERHFRAERGQNGQGRDCTGKRGKDITIKVPVGTRVIDA-------- 99 (390)
T ss_pred cccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCCceEEcCCCCCCCCCCCCCCCCCceEEEcCCCCEEEeC--------
Confidence 67899999999999999999999999999887 57899999999999999999999999999999999962
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+++ .++
T Consensus 100 --------------------------~~~------------------------------------------------~~~ 105 (390)
T PRK12298 100 --------------------------DTG------------------------------------------------EVI 105 (390)
T ss_pred --------------------------CCC------------------------------------------------cEE
Confidence 111 267
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
++|..+++.+++|+||.||+||.+|++++++ .++. ...|++|+++++.||++.+++|+|
T Consensus 106 ~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~----~p~~-----------------~~~g~~g~~~~~~lelk~iadVal 164 (390)
T PRK12298 106 GDLTEHGQRLLVAKGGWHGLGNTRFKSSVNR----APRQ-----------------KTPGTPGEERELKLELKLLADVGL 164 (390)
T ss_pred EEeccCCcEEEEecCCCCccchhhhccCccC----CCcc-----------------cCCCCCCceEEEEEeeeccccEEE
Confidence 8999999999999999999999999998873 1221 247999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||+||||||||||+|+++++.+++|||||+.|..|.+.+.+ .+++++||||++++++.+.+++..|++|+++|+++++|
T Consensus 165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~V 244 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHL 244 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999986 56999999999999998888999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHH---HHHHcCC-CcEEEEecccCcC
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE---LERRVQG-VPIYPVCAVLEEG 395 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~---l~~~~~~-~~ii~vSA~~g~g 395 (423)
+|++... ..++...+..++.++..|.+.+..+|.|+|+||+|+....+..+. +.+.+.. .++++|||+++.|
T Consensus 245 VD~s~~~----~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~G 320 (390)
T PRK12298 245 IDIAPID----GSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLG 320 (390)
T ss_pred eccCccc----ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcC
Confidence 9987311 135778888999999998888889999999999999866544333 3333322 3799999999999
Q ss_pred HHHHHHHHHHHhccc
Q 014494 396 VPELKVGLRMLVNGE 410 (423)
Q Consensus 396 i~eL~~~i~~~l~~~ 410 (423)
+++|++.|.+.+++.
T Consensus 321 IdeLl~~I~~~L~~~ 335 (390)
T PRK12298 321 VKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHhhhC
Confidence 999999999999764
No 8
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=8.5e-41 Score=328.24 Aligned_cols=249 Identities=25% Similarity=0.284 Sum_probs=208.1
Q ss_pred chhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCccccccc
Q 014494 138 ASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 214 (423)
Q Consensus 138 l~if~~~a~t~e~~---ela~l~~~~~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (423)
|+||++||+|+||| |||||+|++|+|.+.|..+.+..||.|-+|+++.+.++ .++.++.||.+++++++++
T Consensus 103 LdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~------drR~ir~rI~~i~~eLe~v 176 (411)
T COG2262 103 LDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLET------DRRRIRRRIAKLKRELENV 176 (411)
T ss_pred HHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999888888999998876655 4567888999999999999
Q ss_pred ccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCc
Q 014494 215 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLI 293 (423)
Q Consensus 215 ~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i 293 (423)
++++...+..+ .-...+.|+||||+|||||||+|+|+++...+.+..|+|++|+...+.+.+ ..+++.||+|||
T Consensus 177 ~~~R~~~R~~R-----~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI 251 (411)
T COG2262 177 EKAREPRRKKR-----SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFI 251 (411)
T ss_pred HHHHHHHhhhh-----cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCc
Confidence 88876665555 246788999999999999999999999999999999999999999999985 899999999999
Q ss_pred CCccccccchHHHHH---HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH
Q 014494 294 KGAHENRGLGHAFLR---HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE 370 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~---~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~ 370 (423)
+.. +..|..+|.+ ....+|+++||+|+|++ ....++.....-|..+ .....|+|+|+||+|+....
T Consensus 252 ~~L--P~~LV~AFksTLEE~~~aDlllhVVDaSdp-------~~~~~~~~v~~vL~el--~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 252 RDL--PHPLVEAFKSTLEEVKEADLLLHVVDASDP-------EILEKLEAVEDVLAEI--GADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred ccC--ChHHHHHHHHHHHHhhcCCEEEEEeecCCh-------hHHHHHHHHHHHHHHc--CCCCCCEEEEEecccccCch
Confidence 944 3457777754 45568999999999984 4555555555555443 34579999999999988766
Q ss_pred HHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 371 EVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 371 ~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
.....+....+ ..++|||+++.|++.|.+.|.+.+...
T Consensus 321 ~~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 321 EILAELERGSP--NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hhhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 55555555432 589999999999999999999988743
No 9
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=2.2e-35 Score=301.47 Aligned_cols=247 Identities=23% Similarity=0.232 Sum_probs=185.5
Q ss_pred chhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCccccccc
Q 014494 138 ASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 214 (423)
Q Consensus 138 l~if~~~a~t~e~~---ela~l~~~~~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (423)
|+||++||+|+||| |||+|+|.+|||.+.+.++.+++||.|.+|+++...+. .++.++.++..+++++++.
T Consensus 108 l~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~------d~r~i~~ri~~l~~~L~~~ 181 (426)
T PRK11058 108 LDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLET------DRRLLRNRIVQILSRLERV 181 (426)
T ss_pred HHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHH------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999989988766554 3455667777888888777
Q ss_pred ccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-eEEEEcCCCCc
Q 014494 215 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLI 293 (423)
Q Consensus 215 ~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-~i~l~DtpG~i 293 (423)
...+...+..+ .....+.|+|||+||||||||+|+|++.+..+.+++|+|+++..+.+.+.+. .+.++||||++
T Consensus 182 ~~~r~~~r~~r-----~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 182 EKQREQGRRAR-----IKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred HHhHHHHHHHh-----hhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCccc
Confidence 65443211111 1235579999999999999999999998888899999999999999988774 89999999997
Q ss_pred CCccccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH
Q 014494 294 KGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE 370 (423)
Q Consensus 294 ~~a~~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~ 370 (423)
+..+. .+...| +.++..||++++|+|++++ ........+...+..+. ..+.|+|+|+||+|+....
T Consensus 257 r~lp~--~lve~f~~tl~~~~~ADlIL~VvDaS~~-------~~~e~l~~v~~iL~el~--~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 257 RHLPH--DLVAAFKATLQETRQATLLLHVVDAADV-------RVQENIEAVNTVLEEID--AHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred ccCCH--HHHHHHHHHHHHhhcCCEEEEEEeCCCc-------cHHHHHHHHHHHHHHhc--cCCCCEEEEEEcccCCCch
Confidence 63221 233334 4567889999999999873 33444433333333221 1368999999999997532
Q ss_pred HHHHHHHHHcCCCc-EEEEecccCcCHHHHHHHHHHHhc
Q 014494 371 EVYEELERRVQGVP-IYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 371 ~~~~~l~~~~~~~~-ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
........ .+.+ +++|||++|.|+++|+++|.+.+.
T Consensus 326 ~~~~~~~~--~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 326 EPRIDRDE--ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred hHHHHHHh--cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 21111111 1233 588999999999999999998874
No 10
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=2.7e-34 Score=287.15 Aligned_cols=244 Identities=24% Similarity=0.247 Sum_probs=183.9
Q ss_pred chhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCccccccc
Q 014494 138 ASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 214 (423)
Q Consensus 138 l~if~~~a~t~e~~---ela~l~~~~~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (423)
|+||++||+|+||| |+|+|+|.++++.+.+..+.+..||.|.+|+.+..... .++.+++++..+++++++.
T Consensus 100 l~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~------~~~~i~~ri~~l~~~L~~~ 173 (351)
T TIGR03156 100 LDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLET------DRRLIRERIAQLKKELEKV 173 (351)
T ss_pred HHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999887788888999888766532222 3345667788888888877
Q ss_pred ccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCc
Q 014494 215 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLI 293 (423)
Q Consensus 215 ~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i 293 (423)
..++...+..+ +....++|+|||+||||||||+|+|++....+.+++|+|+++..+.+.++ +..+.++||||++
T Consensus 174 ~~~~~~~r~~r-----~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 174 EKQRERQRRRR-----KRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred HHHHHHHHhhh-----cccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 76654332222 12355899999999999999999999988778899999999999999994 5899999999997
Q ss_pred CCccccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH
Q 014494 294 KGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE 370 (423)
Q Consensus 294 ~~a~~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~ 370 (423)
+..+. .+...| +.++..||++++|+|++++ ....+...+...+..+ ...++|+|+|+||+|+....
T Consensus 249 ~~l~~--~lie~f~~tle~~~~ADlil~VvD~s~~-------~~~~~~~~~~~~L~~l--~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 249 RDLPH--ELVAAFRATLEEVREADLLLHVVDASDP-------DREEQIEAVEKVLEEL--GAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred ccCCH--HHHHHHHHHHHHHHhCCEEEEEEECCCC-------chHHHHHHHHHHHHHh--ccCCCCEEEEEEeecCCChH
Confidence 64221 222333 4567889999999999873 3344444444434332 22478999999999997654
Q ss_pred HHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 371 EVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 371 ~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.. ..+.. ...++++|||+++.|+++|++.|.+.
T Consensus 318 ~v-~~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 318 RI-ERLEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hH-HHHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 32 22222 12468999999999999999998765
No 11
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=99.97 E-value=1.4e-32 Score=242.44 Aligned_cols=128 Identities=41% Similarity=0.655 Sum_probs=67.9
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.+.|||||||||+||||||+|++++.+|.++ +++|+|+||++|++++++|++|+|++|+||+||+|++.+
T Consensus 26 ~~~~ggp~GG~GG~GG~V~l~~~~~~~sL~~~~~~~~~~A~~G~~G~~~~~~G~~G~dl~i~VP~GT~V~~~~------- 98 (156)
T PF01018_consen 26 YVPKGGPDGGNGGNGGDVYLVADENVNSLLDLKNKKHYKAENGENGKSRNCHGKNGKDLIIKVPVGTVVYDAD------- 98 (156)
T ss_dssp TCCEEEE----------EEEEE-TT--SSCCCGTSSEEE-------BTTTB-------EEEEE-TTEEEEETT-------
T ss_pred cccCCCCCCCCCCCCceeEEEecccccchhhcceeeeEEcCCCCCCCCCcccccCCCccEeeecCCcEEEeec-------
Confidence 67899999999999999999999999999887 479999999999999999999999999999999999621
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
++ .++
T Consensus 99 ---------------------------~~------------------------------------------------~~l 103 (156)
T PF01018_consen 99 ---------------------------TG------------------------------------------------ELL 103 (156)
T ss_dssp ---------------------------T--------------------------------------------------EE
T ss_pred ---------------------------cc------------------------------------------------cch
Confidence 11 278
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeecc
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELK 233 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk 233 (423)
+||..+++++++|+||.||+||.+|++++++ .+.+ .+.|++||++++.|||+
T Consensus 104 ~Dl~~~g~~~lvArGG~GG~GN~~f~s~~~~-----~P~~----------------~~~G~~Ge~~~l~LELK 155 (156)
T PF01018_consen 104 ADLTEPGQRFLVARGGRGGLGNAHFKSSTNR-----APRF----------------ATPGEPGEERKLELELK 155 (156)
T ss_dssp EEE-STT-EEEEE--------GGGC-BTTCS-----S--E----------------EE------EEEEEEEEE
T ss_pred heeecccceeEEecCCCCccccccccCCCCC-----CCCc----------------cCCCCCceEEEEEEEEe
Confidence 9999999999999999999999999998763 2221 14799999999999987
No 12
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.95 E-value=4.6e-30 Score=243.85 Aligned_cols=244 Identities=22% Similarity=0.206 Sum_probs=189.1
Q ss_pred cchhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCC-CccCCccccCCCCCccccccccccCCCCCCccccc
Q 014494 137 KASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGE-GGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASD 212 (423)
Q Consensus 137 ~l~if~~~a~t~e~~---ela~l~~~~~~l~~~~~~~~~~~GG~-GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (423)
.|+||.++|.|+||+ .+|+.+|..++|...++++.+.+||+ -|.|..... .+ +++++|.++.+++++++
T Consensus 89 vl~if~q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id--~d-----~~rllr~kea~lrKeL~ 161 (410)
T KOG0410|consen 89 VLQIFEQEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIID--RD-----IRRLLRIKEAQLRKELQ 161 (410)
T ss_pred HHHHHHHHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhH--HH-----HHHHHHHHHHHHHHHHH
Confidence 399999999999999 99999999999999999999999996 444443332 22 44667778889999999
Q ss_pred ccccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCC
Q 014494 213 DQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPG 291 (423)
Q Consensus 213 ~~~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG 291 (423)
..++++.++.|.+ -...+.|++|||+|||||||+++|+++.....+..|+|++|+.....++. ..+++.||.|
T Consensus 162 ~vrrkr~~r~gr~------~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvG 235 (410)
T KOG0410|consen 162 RVRRKRQRRVGRE------GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVG 235 (410)
T ss_pred HHHHHHhhhhccc------cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechh
Confidence 9988875555443 35778999999999999999999998888889999999999999888876 7788999999
Q ss_pred CcCCccccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCc
Q 014494 292 LIKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDE 366 (423)
Q Consensus 292 ~i~~a~~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl 366 (423)
|++.. ...|...| +.++..+|+|+||+|+|++ +...+...++..|..+.- .-....+|-|-||+|.
T Consensus 236 FisdL--P~~LvaAF~ATLeeVaeadlllHvvDiShP-------~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 236 FISDL--PIQLVAAFQATLEEVAEADLLLHVVDISHP-------NAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred hhhhC--cHHHHHHHHHHHHHHhhcceEEEEeecCCc-------cHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 99844 34566666 5677789999999999984 555666666666654420 1112335556699998
Q ss_pred CChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 367 DGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
....... .....+++||++|+|++++++.+...+..
T Consensus 307 e~~~~e~-------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 307 EEDEVEE-------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccCcc-------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 6542110 01236899999999999999998876643
No 13
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.93 E-value=3.9e-26 Score=217.94 Aligned_cols=202 Identities=31% Similarity=0.458 Sum_probs=156.6
Q ss_pred ccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe
Q 014494 200 YKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF 279 (423)
Q Consensus 200 ~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~ 279 (423)
++.+++++++++++.++ ..|.-| ..+..+....+.|+|||+|++||||||++||+.++.+++|+|||+.|..|.+.+
T Consensus 31 lKaklA~Lr~El~~~~~-~~gggg--~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y 107 (365)
T COG1163 31 LKAKLAELREELEKRKS-KSGGGG--SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY 107 (365)
T ss_pred HHHHHHHHHHHHhhhhh-cCCCCC--CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee
Confidence 34456677777766522 222222 446667788999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCC-----------------C------------
Q 014494 280 DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGR-----------------K------------ 330 (423)
Q Consensus 280 ~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~-----------------~------------ 330 (423)
.+.+++++|+||++++++.+++.+.+++..++.||++++|+|+....... +
T Consensus 108 ~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gG 187 (365)
T COG1163 108 KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGG 187 (365)
T ss_pred cCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCC
Confidence 99999999999999999999999999999999999999999998642100 0
Q ss_pred ------C---CCcHHHHHHHHHHHHhhh-------------------cccCCCCeEEEEeCCCcCChHHHHHHHHHHcCC
Q 014494 331 ------G---IKPWKQLRDLIIELEHHQ-------------------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQG 382 (423)
Q Consensus 331 ------~---~~~~~~~~~l~~eL~~~~-------------------~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~ 382 (423)
. ....+..+.++.+-.-++ ....-+|.|+|+||+|+... +.+..+.+..
T Consensus 188 I~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~l~~~~-- 264 (365)
T COG1163 188 IRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELERLARKP-- 264 (365)
T ss_pred EEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHHHHhcc--
Confidence 0 011233333333321111 12345899999999999984 4456666653
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.++++||..+.|+++|.+.|++.+.
T Consensus 265 -~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 265 -NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred -ceEEEecccCCCHHHHHHHHHHhhC
Confidence 7899999999999999999999885
No 14
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.2e-24 Score=194.63 Aligned_cols=166 Identities=51% Similarity=0.788 Sum_probs=135.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-eEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
++|++||.+|||||||+++|++..+.++.++++|..+..+.+.+++. .+.++||||+.+.......+...|++++..||
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 47999999999999999999998887888999999999999988886 99999999997655554567788888899999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii~vSA~ 391 (423)
++++|+|+++. ..+...+..+.+++..+.+.+..+|.++|+||+|+.......+.+.... ...+++++||+
T Consensus 81 ~vi~v~D~~~~------~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGD------DDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCC------CCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecC
Confidence 99999999872 0467777888888876655556899999999999976544333333222 24679999999
Q ss_pred cCcCHHHHHHHHHHHh
Q 014494 392 LEEGVPELKVGLRMLV 407 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l 407 (423)
++.|+++++++|.+++
T Consensus 155 ~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 155 TGEGLDELLRKLAELL 170 (170)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999988653
No 15
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=7.7e-24 Score=187.35 Aligned_cols=150 Identities=33% Similarity=0.516 Sum_probs=113.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~i~~ad 314 (423)
+|+|+|.||+|||||+|+|+|.+..+++||++|.+...|.+.+.+..+.++|+||+++-.+.. ......++. .+..|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D 80 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKPD 80 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCCC
Confidence 689999999999999999999999999999999999999999999999999999987643221 112222222 36789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|++. ++.-..+..++..+ ..|+|+|+||+|..... ...+.|.+.+ +.+++++||+
T Consensus 81 ~ii~VvDa~~----------l~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~sa~ 144 (156)
T PF02421_consen 81 LIIVVVDATN----------LERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVSAR 144 (156)
T ss_dssp EEEEEEEGGG----------HHHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEBTT
T ss_pred EEEEECCCCC----------HHHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEEeC
Confidence 9999999985 23323344555443 79999999999987543 1256677766 6899999999
Q ss_pred cCcCHHHHHHHH
Q 014494 392 LEEGVPELKVGL 403 (423)
Q Consensus 392 ~g~gi~eL~~~i 403 (423)
+++|+++|++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 16
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.90 E-value=7e-23 Score=201.91 Aligned_cols=178 Identities=31% Similarity=0.488 Sum_probs=139.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC------------------------CeeEEEEcCCCCc
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------------------DIQITVADIPGLI 293 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~------------------------~~~i~l~DtpG~i 293 (423)
|+|||.||+|||||+|+|++....+++|||||.+|+.|...+. ...+.++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999999999999999999999987751 1478999999999
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCC------CCCCCcHHHHHHHHHHHHhh-------------------
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDG------RKGIKPWKQLRDLIIELEHH------------------- 348 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~------~~~~~~~~~~~~l~~eL~~~------------------- 348 (423)
++++++.+++..|+.+++.||+++||+|++...+. ....+|..++..+..||..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999853211 01124555544444333321
Q ss_pred ------------h------------------c------------------ccCCCCeEEEEeCCCcCChHHHHHHHHHHc
Q 014494 349 ------------Q------------------E------------------GLSDRPSLVVANKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 349 ------------~------------------~------------------~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~ 380 (423)
. + -+..+|+|+|+||+|+...++..+.+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~ 240 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLKY 240 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhhC
Confidence 0 0 134689999999999876666666565555
Q ss_pred CCCcEEEEecccCcCHHHHHH-HHHHHhccccCCcC
Q 014494 381 QGVPIYPVCAVLEEGVPELKV-GLRMLVNGEKSERL 415 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~ 415 (423)
....++++||+.+.++++|.+ .+.+++++.+....
T Consensus 241 ~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~ 276 (318)
T cd01899 241 PDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI 276 (318)
T ss_pred CCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence 556899999999999999998 69999987654443
No 17
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1.1e-22 Score=182.48 Aligned_cols=167 Identities=46% Similarity=0.668 Sum_probs=128.8
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEE
Q 014494 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAY 318 (423)
Q Consensus 240 LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~ 318 (423)
|+|++|||||||+++|++....+++++++|..+..+.+.++ +..+.++||||+.+.......+...|+.++..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987778899999999999998888 89999999999977655555677788888999999999
Q ss_pred EEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc-----cCCCCeEEEEeCCCcCChHHHHHH---HHHHcCCCcEEEEec
Q 014494 319 VVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-----LSDRPSLVVANKIDEDGAEEVYEE---LERRVQGVPIYPVCA 390 (423)
Q Consensus 319 VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-----l~~~P~IiVlNKiDl~~~~~~~~~---l~~~~~~~~ii~vSA 390 (423)
|+|+++.... ....+......+..++...... +..+|.++|+||+|+......... ........+++++||
T Consensus 81 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 81 VVDASEDDDI-GGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEeccCCccc-cccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 9999873100 0003556666666666544322 357999999999999876544332 222224568999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|++++++.+..++
T Consensus 160 ~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 160 KTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhcCHHHHHHHHHhhC
Confidence 99999999999887653
No 18
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=6e-22 Score=188.57 Aligned_cols=162 Identities=27% Similarity=0.339 Sum_probs=129.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-ccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~l~~~fl~~i~~ad 314 (423)
.|++||.||||||||+|+|.|.+.. +++.+-||.....|.+..++.+++++||||+.+..+ .+.-+.......+..+|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 7999999999999999999999876 588999999999999999999999999999987543 33445556677889999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----HHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----YEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+..... + ..+.+++.|.. .+.|.|+++||+|....+.. .+.+....+...++++||
T Consensus 88 lilfvvd~~~~~~------~--~d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 88 LILFVVDADEGWG------P--GDEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred EEEEEEeccccCC------c--cHHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 9999999987321 2 22333344432 36899999999999877652 233334446678999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
++|.|++.|.+.+...+++.+
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCC
Confidence 999999999999999998754
No 19
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=2.1e-21 Score=188.08 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=121.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~ad 314 (423)
.|+|+|.||||||||+|+|++.+.. +++++.||.+...+....++.++.++||||+.+..+. ...+...+..++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999998754 6889999998888877777788999999999764221 1123334567789999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHH---HcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELER---RVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~---~~~~~~ii~vSA~ 391 (423)
++++|+|++.. .... ..+...+.. ...|.++|+||+|+.......+.+.. .....+++++||+
T Consensus 82 vvl~VvD~~~~-------~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 82 LILFVVDSDQW-------NGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred EEEEEEECCCC-------CchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999863 2221 333344432 36899999999999865544433333 2233479999999
Q ss_pred cCcCHHHHHHHHHHHhcccc
Q 014494 392 LEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~~ 411 (423)
+|.|+++|++.|.+.+++.+
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999987644
No 20
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=4.5e-22 Score=184.27 Aligned_cols=194 Identities=26% Similarity=0.300 Sum_probs=135.4
Q ss_pred ccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEE
Q 014494 196 KSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLG 275 (423)
Q Consensus 196 ~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g 275 (423)
..+.+++++++++++++...+.+...+-- -+.+..++|+|+|++|||||||+++|++....+.+++++|+.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~ 81 (204)
T cd01878 7 DRRLIRERIAKLRRELEKVKKQRELQRRR-----RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE
Confidence 34455666667777766655543322211 1235567999999999999999999999877777888999999988
Q ss_pred EEEeCCe-eEEEEcCCCCcCCccccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc
Q 014494 276 NMNFDDI-QITVADIPGLIKGAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG 351 (423)
Q Consensus 276 ~v~~~~~-~i~l~DtpG~i~~a~~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~ 351 (423)
.+.+++. .+.+|||||+.+.... .+...| +.++..+|++++|+|+++. ........+...+..+ .
T Consensus 82 ~~~~~~~~~~~i~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~d~ii~v~D~~~~-------~~~~~~~~~~~~l~~~--~ 150 (204)
T cd01878 82 RLRLPDGREVLLTDTVGFIRDLPH--QLVEAFRSTLEEVAEADLLLHVVDASDP-------DYEEQIETVEKVLKEL--G 150 (204)
T ss_pred EEEecCCceEEEeCCCccccCCCH--HHHHHHHHHHHHHhcCCeEEEEEECCCC-------ChhhHHHHHHHHHHHc--C
Confidence 8888774 8999999999653221 121222 3446789999999999873 3333343444444332 2
Q ss_pred cCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 352 LSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 352 l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
..+.|.++|+||+|+........... ....+++++||+++.|+++++++|...+
T Consensus 151 ~~~~~viiV~NK~Dl~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 151 AEDIPMILVLNKIDLLDDEELEERLE--AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCCEEEEEEccccCChHHHHHHhh--cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 23689999999999987654331211 1356799999999999999999987653
No 21
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.87 E-value=2.6e-21 Score=196.17 Aligned_cols=174 Identities=33% Similarity=0.497 Sum_probs=131.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC------------------------CeeEEEEcCCCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------------------DIQITVADIPGL 292 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~------------------------~~~i~l~DtpG~ 292 (423)
+|+|||.||||||||+|+|++....+++|||+|++|+.|.+.+. ...+.++||||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 79999999999999999999999999999999999999986631 145789999999
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCC------CCCCCCcHHHHHHHHHHHHh-------------------
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD------GRKGIKPWKQLRDLIIELEH------------------- 347 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~------~~~~~~~~~~~~~l~~eL~~------------------- 347 (423)
+.+++.+.+++..|+.+++.||+++||+|++...+ .....+|..++..+..||..
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~ 162 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQA 162 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999984210 00011333333222222211
Q ss_pred -----------------------------hh-------------------cccCCCCeEEEEeCCCcCChHHHHHHHHHH
Q 014494 348 -----------------------------HQ-------------------EGLSDRPSLVVANKIDEDGAEEVYEELERR 379 (423)
Q Consensus 348 -----------------------------~~-------------------~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~ 379 (423)
+. .-+..+|+|+|+||+|....+..+..+.+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~~ 242 (396)
T PRK09602 163 EKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKEE 242 (396)
T ss_pred CCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHhc
Confidence 00 012459999999999987544444555554
Q ss_pred cCCCcEEEEecccCcCHHH-HHHHHHHHhcccc
Q 014494 380 VQGVPIYPVCAVLEEGVPE-LKVGLRMLVNGEK 411 (423)
Q Consensus 380 ~~~~~ii~vSA~~g~gi~e-L~~~i~~~l~~~~ 411 (423)
+...++++||+.+.++++ +.+.+.++++..+
T Consensus 243 -~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 243 -KYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred -CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 556799999999999999 7888888876654
No 22
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=4.2e-21 Score=182.04 Aligned_cols=169 Identities=30% Similarity=0.386 Sum_probs=128.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
++|+|+|+||+|||||+++|++..+.+++|+|+|+++..|.+.+++..+.++||||+++.+....++..+++..++.+|+
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 47899999999999999999999888999999999999999999999999999999998776666677788889999999
Q ss_pred eEEEEecCCCCCC-----------------C------------------CC---CCcHHHHHHHHHHHHhhh--------
Q 014494 316 LAYVVDLASGLDG-----------------R------------------KG---IKPWKQLRDLIIELEHHQ-------- 349 (423)
Q Consensus 316 ll~VvD~s~~~~~-----------------~------------------~~---~~~~~~~~~l~~eL~~~~-------- 349 (423)
+++|+|+++.... . .. ....+..+.++.+..-++
T Consensus 81 il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~ 160 (233)
T cd01896 81 ILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRED 160 (233)
T ss_pred EEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccC
Confidence 9999998763210 0 00 011233333333321111
Q ss_pred -----------cccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 350 -----------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 350 -----------~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
......|.++|+||+|+...++.. .+. ....++++||+++.|+++|++.|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~-~~~---~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 161 ITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD-LLA---RQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH-HHh---cCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 112346999999999998765433 232 2346899999999999999999998764
No 23
>PTZ00258 GTP-binding protein; Provisional
Probab=99.87 E-value=2.6e-21 Score=194.39 Aligned_cols=161 Identities=32% Similarity=0.503 Sum_probs=123.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-----------------eEEEEcCCCCcCCc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGA 296 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-----------------~i~l~DtpG~i~~a 296 (423)
....|||||.||||||||+|+|++.++.+++|||||++|+.|.+.+++. ++.++||||++.++
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3448999999999999999999999999999999999999999988742 48999999999999
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHHHhhh------------------------
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQ------------------------ 349 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~------------------------ 349 (423)
+.+.+++..|+.+++.||+++||+|+....+ .....+|..++..+..||..+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~ 179 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEE 179 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhH
Confidence 9988999999999999999999999864321 0012345554444333332110
Q ss_pred ------------------------------------cccCCCCeEEEEeCC--Cc-CChHHHHHHHHHHcC---CCcEEE
Q 014494 350 ------------------------------------EGLSDRPSLVVANKI--DE-DGAEEVYEELERRVQ---GVPIYP 387 (423)
Q Consensus 350 ------------------------------------~~l~~~P~IiVlNKi--Dl-~~~~~~~~~l~~~~~---~~~ii~ 387 (423)
.-+..+|+|+|+|+. |+ ....+.++.+++... +.++++
T Consensus 180 ~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~ 259 (390)
T PTZ00258 180 KVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIP 259 (390)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEE
Confidence 014579999999999 87 344556677776542 467999
Q ss_pred EecccCc
Q 014494 388 VCAVLEE 394 (423)
Q Consensus 388 vSA~~g~ 394 (423)
+||+...
T Consensus 260 ~sa~~E~ 266 (390)
T PTZ00258 260 YSAEFEE 266 (390)
T ss_pred eeHHHHH
Confidence 9987654
No 24
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=9.1e-21 Score=169.25 Aligned_cols=163 Identities=28% Similarity=0.435 Sum_probs=116.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccccc-chHHHHHH-Hhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG-LGHAFLRH-IERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~-l~~~fl~~-i~~a 313 (423)
++|+++|++|||||||+++|++....+..++++|..+..+.+.+.+..+.+|||||+.......+. +....... ...+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 479999999999999999999988777888999999998888888889999999998643221111 11111111 1236
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHH--HHHHHcCCCcEEEEecc
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE--ELERRVQGVPIYPVCAV 391 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~--~l~~~~~~~~ii~vSA~ 391 (423)
|++++|+|+++... ........+..++... ..+.|+|+|+||+|+........ .+... ...+++++||+
T Consensus 81 d~~l~v~d~~~~~~-----~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~Sa~ 151 (168)
T cd01897 81 AAVLFLFDPSETCG-----YSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDLSEIEEEEEL-EGEEVLKISTL 151 (168)
T ss_pred CcEEEEEeCCcccc-----cchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhHHHHHHhhhh-ccCceEEEEec
Confidence 88999999986310 1223334455555432 23789999999999976554332 22222 45789999999
Q ss_pred cCcCHHHHHHHHHHHh
Q 014494 392 LEEGVPELKVGLRMLV 407 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l 407 (423)
++.|++++++++.+.+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998765
No 25
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.8e-21 Score=189.45 Aligned_cols=164 Identities=32% Similarity=0.524 Sum_probs=123.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC------------------eeEEEEcCCCCcCCcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------IQITVADIPGLIKGAH 297 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~------------------~~i~l~DtpG~i~~a~ 297 (423)
..+||||.||+|||||+|+||.....+++|||||++|+.|.+.+.+ ..+.++|++|++.+||
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 3789999999999999999999998899999999999999998765 2578999999999999
Q ss_pred ccccchHHHHHHHhccceeEEEEecCCCCCC---CCCCCcHHHHHHHHHHHHh---------------------------
Q 014494 298 ENRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEH--------------------------- 347 (423)
Q Consensus 298 ~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~--------------------------- 347 (423)
++.|||.+||.+++.+|+|+||||++...+. ....+|..++..+..||..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~ 162 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL 162 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999999864321 0112332222211111100
Q ss_pred -----------------------------------h--hcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcC--CCcEE
Q 014494 348 -----------------------------------H--QEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQ--GVPIY 386 (423)
Q Consensus 348 -----------------------------------~--~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~--~~~ii 386 (423)
+ ..-+..+|+++|+||.|....+ +.++.+++..+ +..++
T Consensus 163 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV 242 (372)
T COG0012 163 KEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVV 242 (372)
T ss_pred HHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEE
Confidence 0 0124579999999999987643 34677777652 45799
Q ss_pred EEecccCcCHHHH
Q 014494 387 PVCAVLEEGVPEL 399 (423)
Q Consensus 387 ~vSA~~g~gi~eL 399 (423)
++||....-+.++
T Consensus 243 ~~sA~~E~eL~~l 255 (372)
T COG0012 243 PVSAAIELELREL 255 (372)
T ss_pred EeeHHHHHHHHhC
Confidence 9999754433333
No 26
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=188.35 Aligned_cols=159 Identities=27% Similarity=0.307 Sum_probs=127.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCc--cccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA--HENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a--~~~~~l~~~fl~~i~~ 312 (423)
+.|+|||.||+|||||+|+|++.+.. ++++|++|.|+..+...+.+..|.++||+|+.... .....+..+.+..++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998765 69999999999999999999999999999998654 2334455667888999
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEeccc
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
||++|+|+|..... .+. -+.+.+.|.. .++|.|+|+||+|-...++...++-.+. -..+++|||.+
T Consensus 84 ADvilfvVD~~~Gi------t~~--D~~ia~~Lr~-----~~kpviLvvNK~D~~~~e~~~~efyslG-~g~~~~ISA~H 149 (444)
T COG1160 84 ADVILFVVDGREGI------TPA--DEEIAKILRR-----SKKPVILVVNKIDNLKAEELAYEFYSLG-FGEPVPISAEH 149 (444)
T ss_pred CCEEEEEEeCCCCC------CHH--HHHHHHHHHh-----cCCCEEEEEEcccCchhhhhHHHHHhcC-CCCceEeehhh
Confidence 99999999998742 222 2223333322 3699999999999886555444454443 34789999999
Q ss_pred CcCHHHHHHHHHHHhc
Q 014494 393 EEGVPELKVGLRMLVN 408 (423)
Q Consensus 393 g~gi~eL~~~i~~~l~ 408 (423)
|.|+.+|++++.+.++
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999999984
No 27
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.85 E-value=6.7e-21 Score=183.74 Aligned_cols=162 Identities=32% Similarity=0.535 Sum_probs=119.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-----------------eEEEEcCCCCcCCccccc
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHENR 300 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-----------------~i~l~DtpG~i~~a~~~~ 300 (423)
|||||.||||||||+|+|++.+..+++|||||++|..|.+.+.+. .+.++||||++++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999999999999999999999998773 489999999999999999
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCC---CCCCcHHHHHHHHHHHHhhh----------------------------
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGR---KGIKPWKQLRDLIIELEHHQ---------------------------- 349 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~---~~~~~~~~~~~l~~eL~~~~---------------------------- 349 (423)
+++..|+.+++.||+++||+|+....+-. ...+|..++..+..||..+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~~~~~~e~~~ 160 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELEL 160 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999986532111 11244444333333222110
Q ss_pred ------------------------------cccCCCCeEEEEeCCC--cCChHHHHHHHHHHc--CCCcEEEEecccCcC
Q 014494 350 ------------------------------EGLSDRPSLVVANKID--EDGAEEVYEELERRV--QGVPIYPVCAVLEEG 395 (423)
Q Consensus 350 ------------------------------~~l~~~P~IiVlNKiD--l~~~~~~~~~l~~~~--~~~~ii~vSA~~g~g 395 (423)
.-+..+|+++|+|+.| ..........+.... .+.+++++||....-
T Consensus 161 l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E~e 240 (274)
T cd01900 161 LEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEAE 240 (274)
T ss_pred HHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHHHH
Confidence 0145699999999998 433333333333322 366899999976655
Q ss_pred HHHH
Q 014494 396 VPEL 399 (423)
Q Consensus 396 i~eL 399 (423)
+.++
T Consensus 241 L~~l 244 (274)
T cd01900 241 LAEL 244 (274)
T ss_pred HHcC
Confidence 5544
No 28
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.85 E-value=1.4e-20 Score=187.19 Aligned_cols=161 Identities=29% Similarity=0.521 Sum_probs=122.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-----------------eEEEEcCCCCcCCccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHE 298 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-----------------~i~l~DtpG~i~~a~~ 298 (423)
..|||||.||||||||+|+|++.++.+++|||||++|+.|.+.+++. .+.++||||++.+++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 37999999999999999999999999999999999999999988762 5899999999999999
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCC---CCCCcHHHHHHHHHHHHhhh--------------------------
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGR---KGIKPWKQLRDLIIELEHHQ-------------------------- 349 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~---~~~~~~~~~~~l~~eL~~~~-------------------------- 349 (423)
+.+++..|+.++++||+++||+|++...+.. ...+|..++..+..||..+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~~~~e~ 162 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKEAKAEL 162 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 9999999999999999999999997431111 11245444443333332111
Q ss_pred --------------------------------cccCCCCeEEEEeCCCc--CChHHHHHHHHHHc--CCCcEEEEecccC
Q 014494 350 --------------------------------EGLSDRPSLVVANKIDE--DGAEEVYEELERRV--QGVPIYPVCAVLE 393 (423)
Q Consensus 350 --------------------------------~~l~~~P~IiVlNKiDl--~~~~~~~~~l~~~~--~~~~ii~vSA~~g 393 (423)
.-+..+|+|+|+|+.|. .......+.+++.. .+.+++++||...
T Consensus 163 ~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E 242 (364)
T PRK09601 163 ELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIE 242 (364)
T ss_pred HHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 11457999999999985 23344556666543 3668999999654
Q ss_pred cCH
Q 014494 394 EGV 396 (423)
Q Consensus 394 ~gi 396 (423)
.-+
T Consensus 243 ~el 245 (364)
T PRK09601 243 AEI 245 (364)
T ss_pred HHH
Confidence 444
No 29
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=6.4e-20 Score=183.15 Aligned_cols=162 Identities=19% Similarity=0.271 Sum_probs=117.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-ccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+|+|.+.+.. +++.+.||.+...+.+.+++.++.+|||||+.+..+ ....+....+..+..||
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aD 133 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSAD 133 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCC
Confidence 8999999999999999999987654 467788898888899999999999999999965322 11223333445678999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcCCCcEEEEeccc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
++++|+|.+.... .....++..+... +.|.|+|+||+|+.... +..+.+....+...++++||++
T Consensus 134 vil~VvD~~~s~~--------~~~~~il~~l~~~-----~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 134 LVLLIIDSLKSFD--------DITHNILDKLRSL-----NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred EEEEEEECCCCCC--------HHHHHHHHHHHhc-----CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9999999765211 1112344444322 56889999999986542 2223333333346799999999
Q ss_pred CcCHHHHHHHHHHHhcccc
Q 014494 393 EEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 393 g~gi~eL~~~i~~~l~~~~ 411 (423)
|.|+++|+++|.+.+++.+
T Consensus 201 g~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCHHHHHHHHHHhCCCCC
Confidence 9999999999999887543
No 30
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=3.1e-21 Score=199.34 Aligned_cols=226 Identities=22% Similarity=0.262 Sum_probs=149.3
Q ss_pred hhhhhhhhhcccccCCcE-EEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeee
Q 014494 152 GEKQIQYNIAELTKQGQR-VIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELIL 230 (423)
Q Consensus 152 ela~l~~~~~~l~~~~~~-~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~l 230 (423)
+++++.+.++++...+.. ++.+.+..... --|.-+.- .....+.++.++..++++++.....+. .+++
T Consensus 143 al~~l~G~l~~~~~~~r~~l~~~~a~iea~--iDf~ee~~--~~~~~~~i~~~i~~l~~~l~~l~~~~~--~~~~----- 211 (449)
T PRK05291 143 ALRQLQGALSKLINELREELLELLALVEAA--IDFPEEDI--EFLSDEKILEKLEELIAELEALLASAR--QGEI----- 211 (449)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHheEE--ccCCCCCc--ccccHHHHHHHHHHHHHHHHHHHHHHH--HHHH-----
Confidence 788888877776655433 43333321110 01111100 001223344556666666665544332 2222
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch-HHHHH
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLR 308 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~-~~fl~ 308 (423)
++...+|+++|+||||||||+|+|++.+. .+.++++||.++....+.+++..+.++||||+.+....-..++ ...+.
T Consensus 212 -~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 212 -LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred -hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 34567899999999999999999999765 4788999999999999999999999999999865221100111 12356
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEE
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~v 388 (423)
++..+|++++|+|++++ ........+. . ..+.|.++|+||+|+....... .....++++|
T Consensus 291 ~~~~aD~il~VvD~s~~-------~s~~~~~~l~-~-------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~i 350 (449)
T PRK05291 291 AIEEADLVLLVLDASEP-------LTEEDDEILE-E-------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIRI 350 (449)
T ss_pred HHHhCCEEEEEecCCCC-------CChhHHHHHH-h-------cCCCCcEEEEEhhhccccchhh-----hccCCceEEE
Confidence 78899999999999873 2223322221 1 2478999999999997654322 2235679999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+++.|+++|+++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 31
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=173.63 Aligned_cols=161 Identities=30% Similarity=0.466 Sum_probs=122.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccc-hHH---HHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL-GHA---FLRH 309 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l-~~~---fl~~ 309 (423)
..++|.+.|+||+|||||+++||+++|.+++|||||...++|.+..+..+++++||||+.+..-+.++- ..+ .++|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 456999999999999999999999999999999999999999999999999999999998744333221 112 2344
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEE
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIY 386 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii 386 (423)
+ .++++|++|.|..+ + -+.+....++.++... ...|+++|+||+|..+.+.. +.+.... .....+
T Consensus 247 l--~~~IlF~~D~Se~c----g-y~lE~Q~~L~~eIk~~----f~~p~v~V~nK~D~~~~e~~-~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 247 L--AGVILFLFDPSETC----G-YSLEEQISLLEEIKEL----FKAPIVVVINKIDIADEEKL-EEIEASVLEEGGEEPL 314 (346)
T ss_pred h--cCeEEEEEcCcccc----C-CCHHHHHHHHHHHHHh----cCCCeEEEEecccccchhHH-HHHHHHHHhhcccccc
Confidence 4 57899999999742 2 4556666777777543 35899999999999865432 2222111 233457
Q ss_pred EEecccCcCHHHHHHHHHHH
Q 014494 387 PVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+|+..+.+++.+...+...
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 315 KISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ceeeeehhhHHHHHHHHHHH
Confidence 88999999999888777766
No 32
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=4.2e-20 Score=170.55 Aligned_cols=170 Identities=28% Similarity=0.391 Sum_probs=130.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
.++|++||+|.+||||||..|+..+...++|.|||+....|++.+++..+.++|.||++++|++++|-+.+.....+.||
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred eeEEEEecCCCCCCCC--------------------------------------CCCcHHHHHHHHHHHHhhh-------
Q 014494 315 VLAYVVDLASGLDGRK--------------------------------------GIKPWKQLRDLIIELEHHQ------- 349 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~--------------------------------------~~~~~~~~~~l~~eL~~~~------- 349 (423)
+++.|+|++...+... ..-.......++.+-.-++
T Consensus 142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re 221 (364)
T KOG1486|consen 142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE 221 (364)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence 9999999986421100 0000111111221111000
Q ss_pred ------------cccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 350 ------------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 350 ------------~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
..-.-.+++.|.||+|..+-++ .+.+.+. ..-+.||+....|++.|++.||+.+.
T Consensus 222 D~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~ee-vdrlAr~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 222 DCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEE-VDRLARQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CCChHHHHHHHhccceEEEEEEEeeccceecHHH-HHHHhcC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 0011246788889999988665 4455543 34577999999999999999999875
No 33
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=3.1e-19 Score=158.06 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=116.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++|.+.+......+.++.+.....+.+++ ..+.+|||||... +.......+..++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER-------FRSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccCC
Confidence 689999999999999999999877777778888888888887776 5689999999754 2233445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....++..+..... .+.|.++|+||+|+.... +....+.+.. +.+++++||
T Consensus 75 ~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (161)
T cd01861 75 VAVVVYDITN-------RQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL-NAMFIETSA 144 (161)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHh-CCEEEEEeC
Confidence 9999999987 2456666666666543221 268999999999995322 2233333333 578999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|+++++++|.+.+
T Consensus 145 ~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 145 KAGHNVKELFRKIASAL 161 (161)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 34
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=4.7e-19 Score=156.90 Aligned_cols=150 Identities=27% Similarity=0.319 Sum_probs=104.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.|+++|.+|||||||+++|++.... ....+.+|.+.....+.+. +..+.+|||||+.+ +.......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 6899999999999999999975321 1223466777776777776 68899999999754 33445566788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHc-----CCCc
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV-----QGVP 384 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~-----~~~~ 384 (423)
+|++++|+|+++. ...+....+..+... ..+|.++|+||+|+.... ...+.+.+.+ ...+
T Consensus 75 ad~ii~V~d~~~~--------~~~~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 75 IDLVLLVVAADEG--------IMPQTREHLEILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred CCEEEEEEECCCC--------ccHhHHHHHHHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 9999999999752 111111111222111 135999999999997653 2233333333 3568
Q ss_pred EEEEecccCcCHHHHHHHHHH
Q 014494 385 IYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~~ 405 (423)
++++||++++|++++++.+..
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHhh
Confidence 999999999999999988764
No 35
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=1.5e-19 Score=159.22 Aligned_cols=152 Identities=29% Similarity=0.441 Sum_probs=112.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc--cccchHHHHHHHhccceeE
Q 014494 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIERTKVLA 317 (423)
Q Consensus 240 LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~--~~~l~~~fl~~i~~ad~ll 317 (423)
|+|++|+|||||+++|++....+..++++|.+.....+.+++..+.++||||+...... ...+...++.+ ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 58999999999999999987777889999999998999998889999999998653321 11122333333 5899999
Q ss_pred EEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcCCCcEEEEecccCc
Q 014494 318 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAVLEE 394 (423)
Q Consensus 318 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~~~~ii~vSA~~g~ 394 (423)
+|+|+++. .. ...+..++.. .++|.|+|+||+|+..... ..+.+...+ +.+++++||+++.
T Consensus 80 ~v~d~~~~-------~~---~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~iSa~~~~ 143 (158)
T cd01879 80 NVVDATNL-------ER---NLYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELL-GVPVVPTSARKGE 143 (158)
T ss_pred EEeeCCcc-------hh---HHHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhh-CCCeEEEEccCCC
Confidence 99999762 11 1223333332 2689999999999976432 223444433 5689999999999
Q ss_pred CHHHHHHHHHHHhc
Q 014494 395 GVPELKVGLRMLVN 408 (423)
Q Consensus 395 gi~eL~~~i~~~l~ 408 (423)
|++++++.+....+
T Consensus 144 ~~~~l~~~l~~~~~ 157 (158)
T cd01879 144 GIDELKDAIAELAE 157 (158)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987654
No 36
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.82 E-value=9.5e-19 Score=163.77 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=117.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|++||++|||||||+++|++........++.+.+.....+.+++ ..+.+|||||... ....+..++..+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-------GGKMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-------HHHHHHHHhhcC
Confidence 689999999999999999998654444445555666666677654 6789999999743 222334557889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc-cCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++ ..+++.+..|..++..+... ....|.|+|+||+|+.... +....+.+.+ +.+++++
T Consensus 75 d~iilV~D~t~-------~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~-~~~~~~i 146 (215)
T cd04109 75 HAVFLVYDVTN-------SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN-GMESCLV 146 (215)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEE
Confidence 99999999987 35677777777777665432 2245788999999997432 2334444444 4679999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||++|+|+++++++|.+.+...
T Consensus 147 SAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999877643
No 37
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=3.7e-19 Score=158.71 Aligned_cols=154 Identities=22% Similarity=0.301 Sum_probs=109.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC----CCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV----GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i----~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|+++|++|||||||+++|++..... .....+|.....+.+.+++..+.+|||||+.. +...+..++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES-------LRSLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCC
Confidence 47899999999999999998753321 22334566666778888889999999999865 44445567889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHc-----CCCc
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV-----QGVP 384 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~-----~~~~ 384 (423)
++++++|+|+++. ..+.....++..+... ....+.|+++|+||+|+.... +..+.+.... ...+
T Consensus 74 ~~~~v~vvd~~~~-------~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 74 CHAIIYVIDSTDR-------ERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred CCEEEEEEECchH-------HHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceE
Confidence 9999999998762 3344444444443321 123478999999999986542 2222222211 2357
Q ss_pred EEEEecccCcCHHHHHHHHHH
Q 014494 385 IYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~~ 405 (423)
++++||++++|+++++++|.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999998864
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=1.5e-18 Score=153.90 Aligned_cols=154 Identities=21% Similarity=0.244 Sum_probs=111.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++..... ...+..|+.+.....+.+++ ..+.+|||||..+ +......++..++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~~ 74 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ-------FTAMRDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc-------cchHHHHHhhcCC
Confidence 789999999999999999987542 33444444444445566666 4677899999865 2222344578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..+++....+..++..+. ...+.|.|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04136 75 GFVLVYSITS-------QSSFNDLQDLREQILRVK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQW-GCPFYETSA 145 (163)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceecHHHHHHHHHHc-CCeEEEecC
Confidence 9999999987 356677777777765542 22468999999999986532 2233344444 368999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|+++++++|.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 146 KSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999988654
No 39
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=1.1e-18 Score=153.93 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=108.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++++... ...+..|+.+.....+.+++ ..+.+|||||..+ +...+..++..++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcc-------hHHHHHHHHhcCC
Confidence 689999999999999999997643 33444444333344455555 4577899999754 3334445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++ ..++..+..+...+..+. ...+.|.++|+||+|+..... ....+.+.+ +.+++++||+
T Consensus 75 ~~i~v~~~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 145 (162)
T cd04138 75 GFLCVFAINS-------RKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY-GIPYIETSAK 145 (162)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHh-CCeEEEecCC
Confidence 9999999987 245566666666665442 224789999999999975321 222333333 5689999999
Q ss_pred cCcCHHHHHHHHHHHh
Q 014494 392 LEEGVPELKVGLRMLV 407 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l 407 (423)
++.|+++++++|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988654
No 40
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=6.9e-19 Score=172.31 Aligned_cols=162 Identities=30% Similarity=0.358 Sum_probs=119.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~ad 314 (423)
.|+|+|.||||||||+|+|++.+.. +.+.+.||.....+.+..++.++.++||||+...... +..+.......+..+|
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999998754 5677888887777777766689999999999764321 1122334456778899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC-ChHHH---HHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAEEV---YEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~-~~~~~---~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++... .....+...+.. .+.|.++|+||+|+. ..... .+.+.+.++..+++++||
T Consensus 87 ~il~vvd~~~~~~--------~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 87 LVLFVVDADEKIG--------PGDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred EEEEEEeCCCCCC--------hhHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 9999999986211 122333333321 268999999999998 43333 334444445568999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++.|+++|++.|.+.+++.+
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999987543
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=1.2e-18 Score=155.76 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=110.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++++.+......+..+.+.....+..++ ..+.+|||||..+ +......+++.++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-------~~~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-------YRTITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHccCCc
Confidence 789999999999999999998765433223222222223333443 5789999999754 3334456788999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..+++.+..+..++..+. ....|.++|+||+|+.... +....+.+.+ +.+++++||
T Consensus 76 ~~l~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (165)
T cd01865 76 GFILMYDITN-------EESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLADQL-GFEFFEASA 145 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999986 356677777777765543 2368999999999996542 2233344443 468999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|++++++++...+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987664
No 42
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=6.4e-19 Score=154.71 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=113.5
Q ss_pred EEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-ccccchHHHHHHHhcccee
Q 014494 239 GLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 239 ~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~l~~~fl~~i~~ad~l 316 (423)
+++|.+|||||||+++|++... .+.+++.+|.+.....+.+.+..+.++||||+.+... ....+...+...+..+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5799999999999999998753 4567888888888888888889999999999976433 1122333455678889999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCH
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGV 396 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi 396 (423)
++|+|..+... ... ..+...+.. ...|.++|+||+|+.........+.+. ...+++++||+++.|+
T Consensus 81 i~v~d~~~~~~-------~~~-~~~~~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 81 LFVVDGREGLT-------PAD-EEIAKYLRK-----SKKPVILVVNKVDNIKEEDEAAEFYSL-GFGEPIPISAEHGRGI 146 (157)
T ss_pred EEEEeccccCC-------ccH-HHHHHHHHh-----cCCCEEEEEECcccCChHHHHHHHHhc-CCCCeEEEecccCCCH
Confidence 99999876321 111 122222322 258999999999998766543333332 2237899999999999
Q ss_pred HHHHHHHHHHh
Q 014494 397 PELKVGLRMLV 407 (423)
Q Consensus 397 ~eL~~~i~~~l 407 (423)
++++++|.+.+
T Consensus 147 ~~l~~~l~~~~ 157 (157)
T cd01894 147 GDLLDAILELL 157 (157)
T ss_pred HHHHHHHHhhC
Confidence 99999988653
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.81 E-value=7.2e-19 Score=156.62 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=115.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||++++++........+..+.+.....+..++ ..+.+|||||... +......+++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHCCC
Confidence 3799999999999999999998766555566666666666677766 4688999999754 333334567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ ..++..+..++.++..... .+.|.++|+||+|+.... +....+.... +.+++++|
T Consensus 77 ~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 146 (165)
T cd01868 77 VGALLVYDITK-------KQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN-GLSFIETS 146 (165)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHc-CCEEEEEE
Confidence 99999999986 3566777777777655432 258999999999986532 2223333332 56899999
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|+++.|++++++.|...+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999987654
No 44
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=3.6e-19 Score=178.76 Aligned_cols=162 Identities=25% Similarity=0.313 Sum_probs=126.5
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc--cccchHHHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLR 308 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~--~~~l~~~fl~ 308 (423)
++.+.+|+|+|.||||||||||+|++.+.. +.++|+||.|.....+.+++.++.++||+|+-+.... ..|.. .-++
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe-Rs~~ 292 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE-RAKK 292 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHH-HHHH
Confidence 678889999999999999999999998665 7999999999999999999999999999999764432 22222 2357
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEE
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~v 388 (423)
.++.||++++|+|.+.+. +......+ . + ...++|.++|+||+|+....... .+ +...+.+++.+
T Consensus 293 ~i~~ADlvL~v~D~~~~~-------~~~d~~~~-~-~-----~~~~~~~i~v~NK~DL~~~~~~~-~~-~~~~~~~~i~i 356 (454)
T COG0486 293 AIEEADLVLFVLDASQPL-------DKEDLALI-E-L-----LPKKKPIIVVLNKADLVSKIELE-SE-KLANGDAIISI 356 (454)
T ss_pred HHHhCCEEEEEEeCCCCC-------chhhHHHH-H-h-----cccCCCEEEEEechhcccccccc-hh-hccCCCceEEE
Confidence 889999999999999731 12222211 1 1 12379999999999998765422 22 33345579999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||++++|++.|.+.|.+++...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 45
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.81 E-value=2.1e-18 Score=153.65 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=107.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+........+..........+.+++ ..+.+|||||... +...+..++..+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-------FQTMHASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHHHhCCCC
Confidence 689999999999999999987643222111111111122333444 5688999999865 3333456688999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHHHHcCCCcEEEEecccC
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
++++|+|+++ ..++..+..++.++.... .+.|.++|+||+|+.... .....+.+.. +.+++++||+++
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 143 (161)
T cd04124 75 ACILVFDVTR-------KITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSVTQKKFNFAEKH-NLPLYYVSAADG 143 (161)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhHHHHHHHHHHHc-CCeEEEEeCCCC
Confidence 9999999987 245566667777665432 368999999999985322 1122233332 568999999999
Q ss_pred cCHHHHHHHHHHHhccc
Q 014494 394 EGVPELKVGLRMLVNGE 410 (423)
Q Consensus 394 ~gi~eL~~~i~~~l~~~ 410 (423)
.|++++++.+.+.+.++
T Consensus 144 ~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 144 TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999998876544
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.81 E-value=2e-18 Score=153.30 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=110.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++++.+......+..+.+.....+.+++ ..+.+|||||... +......++..++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHhccCC
Confidence 689999999999999999998754332223223333344455554 6788999999854 2223344568899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc---cCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG---LSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYP 387 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~---l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~ 387 (423)
++++|+|+++ ..++..+..+..++..+... ....|.++|+||+|+... .+....+.... +.++++
T Consensus 75 ~~ilv~D~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 146 (168)
T cd04119 75 GVLLVYDVTD-------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK-GFKYFE 146 (168)
T ss_pred EEEEEEECCC-------HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc-CCeEEE
Confidence 9999999987 35566677777777655322 246899999999999632 22223333333 468999
Q ss_pred EecccCcCHHHHHHHHHHHh
Q 014494 388 VCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l 407 (423)
+||+++.|+++++++|.+.+
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999988765
No 47
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.81 E-value=2.1e-18 Score=153.86 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=114.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|++|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||... +......+++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHhCcC
Confidence 3789999999999999999998755443334334444455566665 4689999999754 333344567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++..+. ....|.++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 76 ~~ii~v~d~~~-------~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 145 (166)
T cd01869 76 HGIIIVYDVTD-------QESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL-GIPFLETS 145 (166)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHc-CCeEEEEE
Confidence 99999999987 356777777777776543 2368999999999986532 2223333333 56899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|+++.|+++++..|.+.+.
T Consensus 146 a~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 146 AKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 48
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=2.6e-18 Score=159.02 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=113.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccc-cccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHE-NRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~a 313 (423)
+|+|+|.+|||||||++++.+........|.++.+.....+.+++ ..+.+|||||+...... ...........+..|
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 689999999999999999998654333334333344444566666 56789999997542210 001111133457889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc-ccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++ ..+++....+..++..+.. .....|+|+|+||+|+.... +..+.+.....+.+++++
T Consensus 82 d~iilv~D~~~-------~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 82 RAFILVYDICS-------PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 99999999987 3667777777766654421 12468999999999995432 223333322235789999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||++|.|+++|++.+...+-..
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 155 SAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999888766543
No 49
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.9e-18 Score=154.16 Aligned_cols=155 Identities=13% Similarity=0.130 Sum_probs=110.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||++++..........+..+.+.....+.+++ ..+.+|||||... +.......+..+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhccC
Confidence 4799999999999999999987543222222222344445566666 5789999999754 333334567789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++.... ..+.|.|+|+||+|+.... +....+.+.+....++++|
T Consensus 77 d~~llv~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 77 NGAIIAYDITR-------RSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 99999999987 355666667777665432 2368999999999997542 2233444444445789999
Q ss_pred cccCcCHHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRML 406 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~ 406 (423)
|+++.|+++++..|.+.
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 50
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=2e-18 Score=158.39 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=115.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecce-EEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~-~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|||||||++++.+.......++.|+.... ...+.+++ ..+.+|||||..+ +......++..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-------FRSVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-------HHHhhHHHccCC
Confidence 6899999999999999999987665555555543232 23455555 5788999999754 222334567789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++..+..+.+ ...|+++|+||+|+.... +..+.+...+ +.+++++|
T Consensus 75 d~~i~v~D~~~-------~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~S 144 (191)
T cd04112 75 HALLLLYDITN-------KASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEY-GVPFMETS 144 (191)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHc-CCeEEEEe
Confidence 99999999987 3566777777777665432 368999999999996321 2234444443 46899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+++.|+++++.+|.+.+.+..
T Consensus 145 a~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554
No 51
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=2.1e-18 Score=153.59 Aligned_cols=153 Identities=27% Similarity=0.282 Sum_probs=108.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC---CeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~---~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
|.|+++|++|||||||+++|++........+++|.......+... +..+.++||||+.. +.......+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-------~~~~~~~~~~~ 73 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-------FTNMRARGASL 73 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-------HHHHHHHHHhh
Confidence 479999999999999999999876665555666666655556654 57899999999754 22333456778
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHHc--------CC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERRV--------QG 382 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~~--------~~ 382 (423)
+|++++|+|+++.. . .+....+..+.. .+.|.++|+||+|+... +.....+.... ..
T Consensus 74 ~d~il~v~d~~~~~-------~-~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01887 74 TDIAILVVAADDGV-------M-PQTIEAIKLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGD 140 (168)
T ss_pred cCEEEEEEECCCCc-------c-HHHHHHHHHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCc
Confidence 99999999998631 1 111222222322 37899999999998753 22223332211 23
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.+++++||+++.|+++|+++|.+...
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHhhh
Confidence 58999999999999999999987654
No 52
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=3.4e-18 Score=158.21 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=113.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-C--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|||||||++++.+........+....+.....+.++ + ..+.+|||||... +...+..++..+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-------FGGMTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-------hhhhHHHHhCCC
Confidence 68999999999999999999864332222322334444556665 3 6789999999854 333345667899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYP 387 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~ 387 (423)
+++++|+|+++ +.++.....|..++..... ...+.|+|+|+||+|+... .+..+.+.+...-.++++
T Consensus 75 ~~~ilv~D~t~-------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 75 VGAIIVFDVTR-------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 99999999987 3567777777766654321 1246899999999999631 223344444443357999
Q ss_pred EecccCcCHHHHHHHHHHHhccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+++.|+++++++|.+.+.+.
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998877543
No 53
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=2.8e-18 Score=152.20 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=109.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+... ...+..++.+.....+.+++ ..+.+|||||..+ +......++..+|
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~ 75 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE-------FSAMREQYMRTGE 75 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcc-------hhHHHHHHHhhCC
Confidence 799999999999999999987543 34455444333344455555 5688999999765 3333446678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ...+.....+..++.... ...+.|+++|+||+|+.... +....+.+.+ +.+++++||
T Consensus 76 ~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 146 (164)
T cd04145 76 GFLLVFSVTD-------RGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKVSREEGQELARKL-KIPYIETSA 146 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccceecHHHHHHHHHHc-CCcEEEeeC
Confidence 9999999987 245666666666654432 12368999999999986532 1222333333 468999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|++++++.|.+.+
T Consensus 147 ~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 147 KDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998765
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=1.9e-18 Score=154.95 Aligned_cols=156 Identities=16% Similarity=0.153 Sum_probs=115.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|++||.+|||||||++++++........+..+.+.....+..++ ..+.+|||||..+ +......+++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 4899999999999999999998765444444444555555566655 5789999999643 333445677889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..|+.++..+. ..+.|.|+|+||+|+.... +....+.... +..++++|
T Consensus 78 d~il~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (168)
T cd01866 78 AGALLVYDITR-------RETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH-GLIFMETS 147 (168)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999986 356777777777775542 2468999999999987432 2222333332 56899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|++++|+++++..+.+.+.
T Consensus 148 a~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 148 AKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998887653
No 55
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.80 E-value=1.8e-18 Score=154.91 Aligned_cols=156 Identities=21% Similarity=0.238 Sum_probs=112.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|++|||||||++++++.+......+..+.+.....+.+++ ..+.+|||||... +......+++.+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-------~~~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhCCC
Confidence 3799999999999999999998754433333333333444556666 5789999999754 233344667899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++..+. ..+.|.++|+||+|+.+.. +....+.+.+ ..+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 146 (167)
T cd01867 77 MGIILVYDITD-------EKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALADEY-GIKFLETS 146 (167)
T ss_pred CEEEEEEECcC-------HHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999986 356677777777766542 2468999999999997432 2223333333 46899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|+++.|+++++.++.+.+.
T Consensus 147 a~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 147 AKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987663
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.80 E-value=5.6e-18 Score=150.57 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=109.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||++++.+... ...+..|+.+.....+.+++ ..+.+|||||..+ +......++..++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE-------FSAMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc-------chHHHHHHHhhCC
Confidence 689999999999999999998643 23344444333334445554 5778999999865 3233345677899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
.+++|+|+++ ...+..+..+...+.... ...+.|.++|+||+|+.... +....+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (164)
T smart00173 74 GFLLVYSITD-------RQSFEEIKKFREQILRVK-DRDDVPIVLVGNKCDLESERVVSTEEGKELARQW-GCPFLETSA 144 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceEcHHHHHHHHHHc-CCEEEEeec
Confidence 9999999987 245556666555554322 12368999999999986532 2233344443 478999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 145 ~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 145 KERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987764
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.80 E-value=5.2e-18 Score=151.09 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=111.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++.... .+..++.|+-+.....+.+++ ..+.+|||||... +......++..+|
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~d 74 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYMKNGQ 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEECCCccc-------chhHHHHHHhhCC
Confidence 78999999999999999998542 334455555444444566665 4567999999865 3333445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....+...+..+. ...+.|+++|+||+|+.... +..+.+.+.+ +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (164)
T cd04175 75 GFVLVYSITA-------QSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA 145 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence 9999999986 245666666666664432 23478999999999996431 2234444443 468999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++.+|.+.+.
T Consensus 146 ~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 146 KAKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987653
No 58
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=2.3e-18 Score=157.86 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|..... ...++.|+.+.....+.+++ ..+.+|||||..+ +......++..+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-------YTALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHHhCC
Confidence 478999999999999999986543 33455554444444455665 4588999999755 2233445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc-cCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
++++|+|+++ ..+++.+..++..+...... ..+.|.|+|+||+|+.... .....+.+.+ +.+++++|
T Consensus 73 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 144 (190)
T cd04144 73 GFILVYSITS-------RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL-GCEFIEAS 144 (190)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh-CCEEEEec
Confidence 9999999987 35677777777776554321 2468999999999996422 1223333333 46899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++.++.+.+.+.
T Consensus 145 Ak~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 145 AKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999876543
No 59
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=4.6e-18 Score=150.67 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=114.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++++........+..+.+.....+.+++ ..+.+||+||... +.......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER-------FRSITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHhCCCC
Confidence 689999999999999999998766544445555555555666666 5788999999754 2223344567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ...++.+..|+.++..+.. .+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa 144 (164)
T smart00175 75 GALLVYDITN-------RESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-GLPFFETSA 144 (164)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 2456666667776655532 37899999999998652 13333444443 578999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
.++.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 60
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=2.5e-18 Score=150.73 Aligned_cols=153 Identities=28% Similarity=0.324 Sum_probs=114.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc-cchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR-GLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~-~l~~~fl~~i~~a 313 (423)
.+|+++|++|||||||+++|++... .+.+++.+|.++..+.+.+.+..+.++||||+.+...... .........+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 3799999999999999999998754 4577888888888888888888999999999876432100 0112344667899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
|++++|+|++.. ......+.+.. ....|.++|+||+|+...... .......+++++||+++
T Consensus 82 ~~~v~v~d~~~~-------~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 82 DLVLFVIDASRG-------LDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKTG 142 (157)
T ss_pred CEEEEEEECCCC-------CCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCCC
Confidence 999999999963 22333222211 247999999999999875543 11223568999999999
Q ss_pred cCHHHHHHHHHHHh
Q 014494 394 EGVPELKVGLRMLV 407 (423)
Q Consensus 394 ~gi~eL~~~i~~~l 407 (423)
.|+++|+++|...+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 61
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.8e-18 Score=153.30 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=111.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
...+|+++|.+|||||||++++++........+..+.+.....+.+.+ ..+.+||+||... +.......+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~ 78 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER-------FRSITQSYYR 78 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhc
Confidence 346899999999999999999986544333333334445555666766 5678899999754 3333445678
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~ 387 (423)
.+|++++|+|+++ ..+...+..++.++..+.. ...|.++|+||+|+....+ ..+.+.+.. ..++++
T Consensus 79 ~~d~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~-~~~~~~ 148 (169)
T cd04114 79 SANALILTYDITC-------EESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQ-DMYYLE 148 (169)
T ss_pred CCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeEEE
Confidence 8999999999986 2445555566666654422 3588999999999875432 233344433 468999
Q ss_pred EecccCcCHHHHHHHHHHHh
Q 014494 388 VCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l 407 (423)
+||+++.|++++++.|.+.+
T Consensus 149 ~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 149 TSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999988653
No 62
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=3.4e-18 Score=151.36 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=102.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
.|+++|.+|||||||+++|++.......+.. |.......+...+..+.+|||||..+ +...+..++..+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVP-TVGFNVESFEKGNLSFTAFDMSGQGK-------YRGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecC-ccccceEEEEECCEEEEEEECCCCHh-------hHHHHHHHHccCCEE
Confidence 3789999999999999999986443333332 23333344556678899999999865 333445567899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhccc--CCCCeEEEEeCCCcCChH---HHHHHHH--HHc-CCCcEEEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGL--SDRPSLVVANKIDEDGAE---EVYEELE--RRV-QGVPIYPV 388 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l--~~~P~IiVlNKiDl~~~~---~~~~~l~--~~~-~~~~ii~v 388 (423)
++|+|+++. ..+.....++..+... +.+ .+.|.++|+||+|+.... +..+.+. ... ...+++++
T Consensus 73 i~v~D~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (162)
T cd04157 73 IFVIDSSDR-------LRLVVVKDELELLLNH-PDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFAS 144 (162)
T ss_pred EEEEeCCcH-------HHHHHHHHHHHHHHcC-cccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEe
Confidence 999999872 3333333344333221 112 368999999999997542 1111111 000 12358999
Q ss_pred ecccCcCHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRM 405 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~ 405 (423)
||+++.|+++++++|.+
T Consensus 145 Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 145 NALTGEGLDEGVQWLQA 161 (162)
T ss_pred eCCCCCchHHHHHHHhc
Confidence 99999999999998853
No 63
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=7.8e-18 Score=149.76 Aligned_cols=157 Identities=23% Similarity=0.330 Sum_probs=113.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch----HHHHHHHh
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRHIE 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~----~~fl~~i~ 311 (423)
+|+++|.+|+|||||+++|++... ...+++++|.......+...+..+.++||||+.+..+....+. ...+.++.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 83 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHh
Confidence 689999999999999999998753 3567788888877777888888899999999876533222221 22345677
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--H---HHHHHHHHHcC---CC
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E---EVYEELERRVQ---GV 383 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~---~~~~~l~~~~~---~~ 383 (423)
.+|++++|+|++++. .... ..+...+.. .+.|.++|+||+|+... . ...+.+++.++ ..
T Consensus 84 ~~d~vi~v~d~~~~~-------~~~~-~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (174)
T cd01895 84 RADVVLLVIDATEGI-------TEQD-LRIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYA 150 (174)
T ss_pred hcCeEEEEEeCCCCc-------chhH-HHHHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCC
Confidence 899999999998732 1111 122222221 36899999999999755 2 22344555442 46
Q ss_pred cEEEEecccCcCHHHHHHHHHHH
Q 014494 384 PIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
+++++||+++.|++++++.+.+.
T Consensus 151 ~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 151 PIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ceEEEeccCCCCHHHHHHHHHHh
Confidence 89999999999999999988765
No 64
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.79 E-value=7.3e-18 Score=156.48 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=114.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.|.++|..|+|||||++++...... ..|..| +.+.....+.+++ ..+.+|||+|..+ +...+..+++.|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~-------~~~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHhcCC
Confidence 4789999999999999999875433 333322 3344455667776 6789999999865 333445678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..+++.+..|...+..+. ..+.|+|+|+||+|+....+ ..+.+.+...+..++.+|
T Consensus 74 d~iIlVfDvtd-------~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etS 144 (202)
T cd04120 74 KGIILVYDITK-------KETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEAS 144 (202)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEec
Confidence 99999999998 467888877777765542 34689999999999964332 223333333356799999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|++|.||++++.+|.+.+..
T Consensus 145 Aktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 145 AKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877643
No 65
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=4e-18 Score=152.34 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=109.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccce-ecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftT-l~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|++|+|||||++++++... ...++.|+ .+.....+.+++ ..+.+|||||..+ +......+++.+
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 75 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYYRGA 75 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhcCC
Confidence 789999999999999999997643 33344332 222223445555 5789999999754 333445678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ +.++..+..++.++..+. ....|.++|+||+|+.... +....+.+.. +.+++++|
T Consensus 76 ~~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 145 (166)
T cd04122 76 AGALMVYDITR-------RSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN-GLLFLECS 145 (166)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCcCHHHHHHHHHHc-CCEEEEEE
Confidence 99999999987 356677777776664432 2367999999999996542 2233333333 56899999
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|+++.|+++++..+...+
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887655
No 66
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=8.9e-18 Score=154.29 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=115.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCccc-ceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSF-TTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~f-tTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+++|..|+|||||+.++...... ..|.. .+.+.....+.+++ ..+.+|||+|..+ +...+..++..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~l~~~~~~~ 78 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR-------FCTIFRSYSRG 78 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhcC
Confidence 47999999999999999999875332 22221 22333344456666 6788999999865 33344566789
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
+|++|+|+|+++ +.++..+..|+.++..+. .+.|.|||+||+|+... .+..+.+.+.. +.+++.+
T Consensus 79 ad~illVfD~t~-------~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~~e~ 147 (189)
T cd04121 79 AQGIILVYDITN-------RWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTFFEV 147 (189)
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEEEEe
Confidence 999999999998 477888888888886654 37899999999999642 22334444443 5789999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||++|.|+++++++|.+.+...
T Consensus 148 SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 148 SPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998766533
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.79 E-value=5.7e-18 Score=151.33 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=104.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++++..... .+..|+-......+.... ..+.+|||||..+. ......++..++
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF-------PAMQRLSISKGH 74 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-------hHHHHHHhhcCC
Confidence 68999999999999999999865432 222222222222233333 57889999998652 222334567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc-ccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEEEe
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVC 389 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~vS 389 (423)
++++|+|+++ ..++..+..++..+..+.. ...+.|.++|+||+|+....+ ....+...+ ..+++++|
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 146 (165)
T cd04140 75 AFILVYSVTS-------KQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW-NCAFMETS 146 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh-CCcEEEee
Confidence 9999999987 3566666666665554321 224789999999999965221 112222222 46799999
Q ss_pred cccCcCHHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRML 406 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~ 406 (423)
|+++.|+++++++|.++
T Consensus 147 A~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 147 AKTNHNVQELFQELLNL 163 (165)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 99999999999998754
No 68
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=4.2e-18 Score=153.09 Aligned_cols=157 Identities=23% Similarity=0.202 Sum_probs=109.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|||||||+++|++... .. ..+|.......+.+.+..+.+|||||..+ +...+..++..+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~-------~~~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHK-------LRPLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChh-------cchHHHHHhccCCEE
Confidence 478999999999999999998632 22 23455555556777788999999999864 333455678899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcC-----CCcEEEEe
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQ-----GVPIYPVC 389 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~-----~~~ii~vS 389 (423)
++|+|+++. ..+.....++.++... ..+.+.|+++|+||+|+.... +....+..... ...++++|
T Consensus 71 i~V~D~s~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 71 VFVVDSSHR-------DRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred EEEEeCCcH-------HHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 999999872 4455555555444321 123468999999999986431 11222222111 12577899
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|++|.|+++++++|.+.+.+..
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999987765443
No 69
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=166.49 Aligned_cols=90 Identities=37% Similarity=0.674 Sum_probs=84.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-----------------eeEEEEcCCCCcCCccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLIKGAHE 298 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-----------------~~i~l~DtpG~i~~a~~ 298 (423)
..+||||.||+|||||+|+|+......++|||+|++|+.+.+...+ ..+.++|++|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 3899999999999999999999998899999999999999998765 25799999999999999
Q ss_pred cccchHHHHHHHhccceeEEEEecCCC
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASG 325 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~ 325 (423)
+.||+..||.|++.+|.|++|+++...
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCc
Confidence 999999999999999999999999874
No 70
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=4.4e-18 Score=155.36 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=109.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||++++++.... .+ .+|..++...+.+.+..+.++||||... ....+..++..+++
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGNIKFTTFDLGGHQQ-------ARRLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 58999999999999999999986432 22 3456677777888888999999999864 33445677889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC---hHHHHHHHHHH----------cCC
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG---AEEVYEELERR----------VQG 382 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~---~~~~~~~l~~~----------~~~ 382 (423)
+++|+|+++. ..+......+.++... ..+.+.|+++|+||+|+.. .+++.+.+.-. ...
T Consensus 88 ii~vvD~~~~-------~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~ 159 (184)
T smart00178 88 IVYLVDAYDK-------ERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP 159 (184)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence 9999999862 3344444444443221 2345789999999999863 23333332100 023
Q ss_pred CcEEEEecccCcCHHHHHHHHHHH
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
..++++||++++|+++++++|.+.
T Consensus 160 ~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 160 LEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eEEEEeecccCCChHHHHHHHHhh
Confidence 459999999999999999999753
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=6.2e-18 Score=149.83 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=108.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++|++........+..+.+.....+.+++ ..+.+|||||.... .......++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-------RTLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh-------hhhhHHHhCCCC
Confidence 689999999999999999998755443333333333334444544 67899999997542 222234567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++ ..++..+..++..+..+.. ..+.|.++|+||+|+.... +....+.... +.+++++||+
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 145 (161)
T cd01863 75 GVILVYDVTR-------RDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKH-NMLFIETSAK 145 (161)
T ss_pred EEEEEEECCC-------HHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHc-CCEEEEEecC
Confidence 9999999986 2456666666666655532 3478999999999997332 2222333333 6789999999
Q ss_pred cCcCHHHHHHHHHHH
Q 014494 392 LEEGVPELKVGLRML 406 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~ 406 (423)
+++|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999988764
No 72
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=5.1e-18 Score=151.18 Aligned_cols=151 Identities=26% Similarity=0.296 Sum_probs=103.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|||||||++++...... .+. +|+......+.+....+.+|||||+.+ +...+..++..||++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~-pt~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~~ 71 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccC-CCCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCEE
Confidence 6899999999999999999654332 222 234444455667778999999999854 334455678999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHH-Hc--CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELER-RV--QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~-~~--~~~~ii~vSA 390 (423)
++|+|+++ ..++.....++.++... ..+...|+++|+||+|+... .++.+.+.. .. ....++++||
T Consensus 72 i~v~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 72 IFVVDSND-------RERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred EEEEeCCC-------HHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeC
Confidence 99999987 24455555544444221 23346899999999999643 232232211 00 1234678999
Q ss_pred ccCcCHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRM 405 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~ 405 (423)
++|+|+++++++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999998853
No 73
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=1.1e-17 Score=147.57 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=108.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|+|||||++++.+........+.++.......+.+.+ ..+.+||+||.... .......+..+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HALGPIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HHhhHHHhccCC
Confidence 689999999999999999998755433333332333344455444 46899999997542 112223456899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....+..++..+... +.|.++|+||+|+.... +....+.+.+ +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~ 144 (162)
T cd04123 75 GAILVYDITD-------ADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSEAEEYAKSV-GAKHFETSA 144 (162)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEeC
Confidence 9999999987 25566677777777655332 68999999999987432 2223333333 567999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|+++++++|.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999997754
No 74
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=9.2e-18 Score=148.73 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=107.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC----CeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~----~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|+++|.+|+|||||++++++........+..+.+.....+.+. ...+.+|||||..+ +......+++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHhcC
Confidence 68999999999999999999864432222222233333344444 26789999999754 23334556788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
++.+++|+|+++ ..++..+..++.++... ..+.|.|+|+||+|+.... +....+.+.+ +.+++++
T Consensus 75 ~~~~v~v~d~~~-------~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 143 (162)
T cd04106 75 AQACILVFSTTD-------RESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL-QLPLFRT 143 (162)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCCCHHHHHHHHHHc-CCeEEEE
Confidence 999999999987 24566666666655432 3478999999999986532 2233444443 5689999
Q ss_pred ecccCcCHHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRML 406 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~ 406 (423)
||+++.|+++++++|...
T Consensus 144 Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 144 SVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999988753
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=5.5e-18 Score=150.62 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=108.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcC-CCCCCCcccce-ecceEEEEEeC---CeeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA-KPAVGHYSFTT-LRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~-~~~i~~~~ftT-l~~~~g~v~~~---~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
+|+++|.+|||||||+++|... .....+|..|+ .+.....+.++ ...+.+|||||... +......++.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDMVSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHHHHHHhC
Confidence 6899999999999999999864 23445565554 23222334333 27899999999743 2223345678
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~ 387 (423)
.+|++++|+|+++ ..++..+..|+.++.... .+.|.|+|+||+|+....+ ..+.+...+ +.++++
T Consensus 75 ~~d~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 143 (164)
T cd04101 75 SPSVFILVYDVSN-------KASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN-QLKFFK 143 (164)
T ss_pred CCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeEEE
Confidence 9999999999987 355666677776665543 3689999999999965421 223333333 467999
Q ss_pred EecccCcCHHHHHHHHHHHh
Q 014494 388 VCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l 407 (423)
+||+++.|++++++.|.+.+
T Consensus 144 ~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 144 TSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EeCCCCCChHHHHHHHHHHh
Confidence 99999999999999988754
No 76
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=5e-18 Score=153.40 Aligned_cols=152 Identities=26% Similarity=0.302 Sum_probs=107.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|++|+|||||+++|+..... .. ..|+......+.+++..+.++||||+.+ +...+..+++.||+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-HT--SPTIGSNVEEIVYKNIRFLMWDIGGQES-------LRSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-Cc--CCccccceEEEEECCeEEEEEECCCCHH-------HHHHHHHHhhcCCE
Confidence 47999999999999999999875432 21 3355556667777888999999999864 44556677899999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH---cCCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR---VQGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~---~~~~~ii~vS 389 (423)
+++|+|+++. ..+......+.++... ..+.+.|.++|+||+|+... +++.+.+... ....+++++|
T Consensus 86 vi~V~D~s~~-------~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 86 VILVIDSTDR-------ERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 9999999862 3333333333333221 23457899999999998753 2333333210 0234689999
Q ss_pred cccCcCHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRM 405 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~ 405 (423)
|++++|+++++++|.+
T Consensus 158 A~~g~gi~e~~~~l~~ 173 (174)
T cd04153 158 ALTGEGLPEGLDWIAS 173 (174)
T ss_pred cCCCCCHHHHHHHHhc
Confidence 9999999999998863
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=1.5e-17 Score=148.74 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=108.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++|.+........+..+.+.....+.+++ ..+.+||+||... +......+++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER-------FQSLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHhHHHHHhcCCC
Confidence 689999999999999999998754322222222233344455665 4567999999754 2233446678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhh--cccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ--EGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~--~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
++++|+|+++. ........+..++.... ....+.|.++|+||+|+... .+..+.+.+.....+++++
T Consensus 75 ~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 75 CCVLVYDVTNP-------KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 99999999862 34455555544432211 11236899999999999732 2233344444444689999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||+++.|+++++++|.+.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998766443
No 78
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.78 E-value=5.8e-18 Score=150.14 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=109.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++|.+........+..+.+.....+.+++ ..+.+|||||... +......++..+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHhcCCC
Confidence 689999999999999999998765444333333344444555555 5788999999754 2223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ...+..+..++.++..+. ..+.|.++|+||+|+.... +....+.... +.+++.+||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (161)
T cd04113 75 GALLVYDITN-------RTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREVTFLEASRFAQEN-GLLFLETSA 144 (161)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999987 245666666666654432 2368999999999996532 2223333333 478999999
Q ss_pred ccCcCHHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRML 406 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~ 406 (423)
+++.|++++++++.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 79
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=4.6e-18 Score=153.19 Aligned_cols=151 Identities=27% Similarity=0.324 Sum_probs=104.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|++|||||||+++|++... ..+. .|.......+.+++..+.+|||||... +...+..++..+|+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTIS-PTLGFQIKTLEYEGYKLNIWDVGGQKT-------LRPYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcC-CccccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 3799999999999999999998632 1221 223333455666778899999999854 33345567889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH---cCCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR---VQGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~---~~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+... +++.+.+... ....+++++|
T Consensus 85 ~i~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 85 LIWVVDSSDR-------LRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence 9999999872 3444444444444221 12357999999999998653 2222222110 1245799999
Q ss_pred cccCcCHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLR 404 (423)
Q Consensus 390 A~~g~gi~eL~~~i~ 404 (423)
|++|.|++++++++.
T Consensus 157 a~~g~gi~~l~~~l~ 171 (173)
T cd04154 157 AVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998875
No 80
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=6.1e-18 Score=154.51 Aligned_cols=154 Identities=23% Similarity=0.346 Sum_probs=109.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|++|||||||+++|++.... . ...|..+..+.+.+++..+.++||||... ....+..++..++.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 47899999999999999999986542 2 23466777888888889999999999754 22344567789999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-------------
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR------------- 379 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~------------- 379 (423)
+++|+|+++. ..+.....++.++... ....+.|.++|+||+|+... ++..+.+...
T Consensus 90 iilV~D~~~~-------~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 90 IVFLVDAADP-------ERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 9999999862 3333334444443322 12356999999999998642 2222222210
Q ss_pred c-CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 380 V-QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 380 ~-~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
. ....++++||++++|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0 123589999999999999999998653
No 81
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=6.8e-18 Score=149.61 Aligned_cols=151 Identities=23% Similarity=0.289 Sum_probs=102.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|++|+|||||+++|+..... . + ..|+......+.+.+..+.+|||||... +...+..++..++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-T-T-IPTIGFNVETVTYKNLKFQVWDLGGQTS-------IRPYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-C-c-CCccCcCeEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCEE
Confidence 4899999999999999999765432 2 2 2344445556667778999999999865 344456678899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHH-c--CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERR-V--QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~-~--~~~~ii~vSA 390 (423)
++|+|+++. .........+..+.. ...+.+.|+++|+||+|+.... ++.+.+... . ...++++|||
T Consensus 71 i~v~d~~~~-------~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 71 IYVVDSTDR-------DRLGTAKEELHAMLE-EEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHh-chhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeec
Confidence 999998862 222222222222211 0123478999999999997532 222222111 1 1246999999
Q ss_pred ccCcCHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRM 405 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~ 405 (423)
+++.|+++++++|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999998864
No 82
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.5e-18 Score=179.34 Aligned_cols=159 Identities=28% Similarity=0.447 Sum_probs=126.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCC--ccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG--AHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~--a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.||+|||||+|+|||.+.+++|||+.|++...|.+.+.+..+.++|+||.++- .+.+......|+. -+..|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D 83 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPD 83 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCC
Confidence 59999999999999999999999999999999999999999999999999999999872 2233333444443 25679
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+++.|+|+++ .+.--.+.-+|..+ +.|+|+++|++|..... -..+.|.+.+ +.|++++||+
T Consensus 84 ~ivnVvDAtn----------LeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L-GvPVv~tvA~ 147 (653)
T COG0370 84 LIVNVVDATN----------LERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLL-GVPVVPTVAK 147 (653)
T ss_pred EEEEEcccch----------HHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHh-CCCEEEEEee
Confidence 9999999986 22222233344332 79999999999987552 3356677766 7899999999
Q ss_pred cCcCHHHHHHHHHHHhccccC
Q 014494 392 LEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~~~ 412 (423)
.|.|++++++.+.+..++...
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 148 RGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred cCCCHHHHHHHHHHhcccccc
Confidence 999999999999887766553
No 83
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.78 E-value=8e-18 Score=147.27 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=103.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
.|+|+|++|||||||+++|++........| |.......+..++..+.++||||... +...+..++..+|++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~i 71 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYCRGVNAI 71 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHHhcCCEE
Confidence 379999999999999999998754433322 33334445566668899999999754 334455678899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHH-Hc--CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELER-RV--QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~-~~--~~~~ii~vSA 390 (423)
++|+|+++. ..+.....++.++... ..+.+.|.++|+||+|+..... ..+.+.. .. ...+++++||
T Consensus 72 i~v~d~~~~-------~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 72 VYVVDAADR-------TALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEe
Confidence 999999862 3333333333333221 2235789999999999875432 2222210 01 2357899999
Q ss_pred ccCcCHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRM 405 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~ 405 (423)
+++.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999998865
No 84
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=1.8e-17 Score=153.04 Aligned_cols=168 Identities=24% Similarity=0.312 Sum_probs=107.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCc--cc--cccchHHHHH---
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA--HE--NRGLGHAFLR--- 308 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a--~~--~~~l~~~fl~--- 308 (423)
.+|+++|.+|||||||+|+|++....++..+++|..+.. +.+. .+.+|||||+.... +. ...+...+..
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999999987777778888876543 3333 68999999963211 10 0111111112
Q ss_pred -HHhccceeEEEEecCCCCCCCCCC---CcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHHHHcCC-
Q 014494 309 -HIERTKVLAYVVDLASGLDGRKGI---KPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQG- 382 (423)
Q Consensus 309 -~i~~ad~ll~VvD~s~~~~~~~~~---~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~~~- 382 (423)
.+..++++++|+|.+......... ........+...+.. .+.|.++|+||+|+.... +..+.+.+.+.-
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 344568999999986521100000 001111222222221 378999999999997543 344555554421
Q ss_pred -------CcEEEEecccCcCHHHHHHHHHHHhccccCC
Q 014494 383 -------VPIYPVCAVLEEGVPELKVGLRMLVNGEKSE 413 (423)
Q Consensus 383 -------~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~~ 413 (423)
.+++++||++| |+++++++|.+.+.+...+
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~~ 197 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKRD 197 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcccc
Confidence 25899999999 9999999999988765544
No 85
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=1.1e-17 Score=172.21 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=120.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch----HHHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRHI 310 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~----~~fl~~i 310 (423)
.+|+++|.+|+|||||+|+|++... .+.++++||.++....+.+++..+.++||||+.+.......+. ...+.++
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 4799999999999999999998754 4688999999998888888888999999999976544321111 1224678
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC-ChH---HHHHHHHHHc---CCC
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAE---EVYEELERRV---QGV 383 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~-~~~---~~~~~l~~~~---~~~ 383 (423)
..||++++|+|+++. ..... ..++..+.. ..+|.|+|+||+|+. ... +..+.+.+.+ ...
T Consensus 253 ~~ad~~ilV~D~~~~-------~~~~~-~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 319 (429)
T TIGR03594 253 ERADVVLLVLDATEG-------ITEQD-LRIAGLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFA 319 (429)
T ss_pred HhCCEEEEEEECCCC-------ccHHH-HHHHHHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCC
Confidence 899999999999873 22222 233333322 268999999999998 322 2333444443 357
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++++||++|.|++++++++.+.+...
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999988876543
No 86
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=2e-17 Score=146.38 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=109.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++++.... ..++..++.+.......+++ ..+.+|||||..+ +.......+..++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQED-------YAAIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhh-------hhHHHHHHhhcCC
Confidence 689999999999999999997533 34555555544444455554 5789999999765 2222334567789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
.+++|+|+++. .++.....+...+..... ..+.|+++|+||+|+... ......+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 144 (164)
T cd04139 74 GFLLVFSITDM-------ESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW-GVPYVETSA 144 (164)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeEEEeeC
Confidence 99999998762 445555555555543321 247999999999999762 12222333333 468999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
++++|++++++.+.+.+.
T Consensus 145 ~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 145 KTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 87
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=6.1e-18 Score=176.28 Aligned_cols=163 Identities=22% Similarity=0.228 Sum_probs=118.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i 310 (423)
...++|+|||.+|||||||+|+|++... .+.+.+++|.+...+.+.+.+..+.+|||||+...... ...+......++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457999999999999999999998754 46788889988888888888899999999998642211 111223345578
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEec
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA 390 (423)
..||++|+|+|+++.. +.. ...+...+.. .++|+|+|+||+|+.........+... .-..+++|||
T Consensus 116 ~~aD~il~VvD~~~~~-------s~~-~~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~~~~~~-g~~~~~~iSA 181 (472)
T PRK03003 116 RTADAVLFVVDATVGA-------TAT-DEAVARVLRR-----SGKPVILAANKVDDERGEADAAALWSL-GLGEPHPVSA 181 (472)
T ss_pred HhCCEEEEEEECCCCC-------CHH-HHHHHHHHHH-----cCCCEEEEEECccCCccchhhHHHHhc-CCCCeEEEEc
Confidence 8999999999998731 111 2333344432 379999999999986543222222221 1224579999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
++|.|+++|+++|...+.+
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999988865
No 88
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=1.3e-17 Score=173.92 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=120.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH------H
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF------L 307 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f------l 307 (423)
..+|++||.+|||||||+|+|++... .+.++++||.++....+.+++..+.+|||||+.+..... .+..+ .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA--SGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCcccccccc--chHHHHHHHHHH
Confidence 46899999999999999999999864 468899999999888888989899999999986533221 11222 2
Q ss_pred HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc---C
Q 014494 308 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---Q 381 (423)
Q Consensus 308 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~---~ 381 (423)
.+++.+|++++|+|+++. ....... ++..+.. .++|+|+|+||+|+...+. ..+.+.+.+ .
T Consensus 289 ~~i~~ad~vilV~Da~~~-------~s~~~~~-~~~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEP-------ISEQDQR-VLSMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP 355 (472)
T ss_pred HHHhcCCEEEEEEeCCCC-------CCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence 356899999999999873 2333332 3333322 3789999999999975421 223343333 3
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..+++++||++|.|++++++.+.+.++.+.
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999999999999998886543
No 89
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=1.5e-17 Score=150.32 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=108.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC------------CeeEEEEcCCCCcCCccccccchH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------DIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~------------~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
+|+++|.+|||||||++++++........+..+.+.....+.+. ...+.+|||||..+ +..
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~ 78 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------FRS 78 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------HHH
Confidence 78999999999999999998864432222222222222333332 26789999999754 333
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHc
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRV 380 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~ 380 (423)
....+++.++++++|+|+++ ..++..+..|+.++..+. ...+.|.++|+||+|+... .+....+.+.+
T Consensus 79 ~~~~~~~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 79 LTTAFFRDAMGFLLIFDLTN-------EQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred HHHHHhCCCCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc
Confidence 34456788999999999987 356677777776665432 1236789999999998643 12234444444
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+.+++++||+++.|++++++.|.+.+
T Consensus 151 -~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 151 -GIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998755
No 90
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=1.7e-17 Score=148.59 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=109.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|+|||||++++.+.......++..+.+.....+.+++ ..+.+|||||..+ +......+++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHhcCC
Confidence 3799999999999999999987654433333222233333455555 5678999999754 223344567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc--cCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG--LSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~--l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++ ..++..+..+..++..+... ..+.|.++|+||+|+.... +..+.+.+.+...+++++
T Consensus 79 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 79 DCCLLTFAVDD-------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred CEEEEEEECCC-------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 99999999987 35566677776666544321 2357999999999986432 223344444434579999
Q ss_pred ecccCcCHHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRML 406 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~ 406 (423)
||+++.|++++++.+.+.
T Consensus 152 Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999988754
No 91
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.77 E-value=9.9e-18 Score=148.19 Aligned_cols=151 Identities=25% Similarity=0.317 Sum_probs=107.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|||||||++++++..+. ....|.......+.+.+..+.+|||||... +...+...+..++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYKNVSFTVWDVGGQDK-------IRPLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEECCEEEEEEECCCChh-------hHHHHHHHhccCCEE
Confidence 4899999999999999999987621 123344555566777788999999999865 333455667889999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHH---cCCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERR---VQGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~---~~~~~ii~vSA 390 (423)
++|+|++.. ..+.....++..+.... .....|.++|+||+|+.... +..+.+... ....+++++||
T Consensus 71 i~v~D~~~~-------~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 71 IFVVDSSDR-------ERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999872 34444444444433221 13578999999999997643 333333322 12457999999
Q ss_pred ccCcCHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRM 405 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~ 405 (423)
+++.|+++++++|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999998864
No 92
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.77 E-value=1.4e-17 Score=148.56 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=110.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.... ....|+.++.......+.+++ ..+.+|||||.... ........+..+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA------DTEQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEEEEEEEECCCCccc------ccchHHHHHHhCC
Confidence 48999999999999999988643 344565555334444555555 46789999998741 1112345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..+++.+..+...+..+.....+.|.|+|+||+|+.... +....+.+.+ +.+++++||
T Consensus 74 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa 145 (165)
T cd04146 74 GFVLVYSITD-------RSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLFFEVSA 145 (165)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEEEEeCC
Confidence 9999999987 356666666666665543213478999999999985431 2233344444 468999999
Q ss_pred ccC-cCHHHHHHHHHHHhc
Q 014494 391 VLE-EGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g-~gi~eL~~~i~~~l~ 408 (423)
+++ .|+++++..+.+.+.
T Consensus 146 ~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 146 AEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 999 599999999987653
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1.3e-17 Score=145.80 Aligned_cols=151 Identities=20% Similarity=0.258 Sum_probs=108.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|.+........+..+.......+..+. ..+.+||+||... +.......+..+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHhcCCC
Confidence 689999999999999999998876655444444444445555543 6789999999854 2233455677899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ .........++..+.... ....|.++|+||+|+.... +....+... ...+++.+||
T Consensus 75 ~ii~v~d~~~-------~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa 144 (159)
T cd00154 75 GAILVYDITN-------RESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-NGLLFFETSA 144 (159)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHHHHHH-cCCeEEEEec
Confidence 9999999987 245566666666655432 1368999999999996221 222233333 3578999999
Q ss_pred ccCcCHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLR 404 (423)
Q Consensus 391 ~~g~gi~eL~~~i~ 404 (423)
+++.|+++++++|.
T Consensus 145 ~~~~~i~~~~~~i~ 158 (159)
T cd00154 145 KTGENVEELFQSLA 158 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999875
No 94
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=2.3e-17 Score=148.93 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=102.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC------CCc---------ccceecceEEEEEe-----CCeeEEEEcCCCCcCCc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV------GHY---------SFTTLRPNLGNMNF-----DDIQITVADIPGLIKGA 296 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i------~~~---------~ftTl~~~~g~v~~-----~~~~i~l~DtpG~i~~a 296 (423)
.|++||.+|+|||||+++|++....+ ..+ ..+|..+..-.+.+ .+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 68999999999999999998743211 111 12233333333333 236788999999975
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHH
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 374 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~ 374 (423)
+...+..++..+|++++|+|+++. ........+. .+.. .+.|.++|+||+|+... ....+
T Consensus 80 -----~~~~~~~~~~~ad~~i~v~D~~~~-------~~~~~~~~~~-~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~ 141 (179)
T cd01890 80 -----FSYEVSRSLAACEGALLLVDATQG-------VEAQTLANFY-LALE-----NNLEIIPVINKIDLPSADPERVKQ 141 (179)
T ss_pred -----hHHHHHHHHHhcCeEEEEEECCCC-------ccHhhHHHHH-HHHH-----cCCCEEEEEECCCCCcCCHHHHHH
Confidence 444556778899999999999863 1222233222 1211 36899999999998643 23344
Q ss_pred HHHHHcC--CCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 375 ELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 375 ~l~~~~~--~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.+.+.+. ...++++||++|+|+++|+++|.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 5555542 235899999999999999999987763
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.77 E-value=8.7e-18 Score=151.17 Aligned_cols=152 Identities=25% Similarity=0.308 Sum_probs=102.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|+.... . .+. +|.......+...+..+.+|||||..+ +...+..++..||+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~-~-~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~a~~ 79 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS-V-TTI-PTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQG 79 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC-c-ccc-CCcccceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 3799999999999999999986433 2 222 223333345566678999999999865 33344567789999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHH--HHc-CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELE--RRV-QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~--~~~-~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ..+.+.|.++|+||+|+... +++.+.+. ... ....++++|
T Consensus 80 ii~v~D~t~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 151 (168)
T cd04149 80 LIFVVDSADR-------DRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC 151 (168)
T ss_pred EEEEEeCCch-------hhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEee
Confidence 9999999872 3444444444333211 12346899999999998642 22222221 111 123678999
Q ss_pred cccCcCHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRM 405 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~ 405 (423)
|++|+|+++++++|.+
T Consensus 152 Ak~g~gv~~~~~~l~~ 167 (168)
T cd04149 152 ATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCCCCChHHHHHHHhc
Confidence 9999999999998853
No 96
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=1.2e-17 Score=148.32 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=108.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++...... ..+..|+.+.....+.+++ ..+.+|||||..+. ...+..++..+|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ad 74 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNGQ 74 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCCCCchhheEEEEEEECCEEEEEEEEECCCcccc-------cchHHHHHhhCC
Confidence 6899999999999999998875433 2233333333444555665 45778999997652 223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....+..++.... ...+.|.++|+||+|+.... .....+.+.+ +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04176 75 GFIVVYSLVN-------QQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSA 145 (163)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecC
Confidence 9999999987 356666777666665432 22478999999999985422 1223343333 468999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|+++++.++.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 146 KSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999987654
No 97
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=1.3e-17 Score=154.21 Aligned_cols=156 Identities=16% Similarity=0.197 Sum_probs=110.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|.+||++|||||||++++.+........+..+.+.....+.+++ ..+.+|||||... +...+..++..+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~a 79 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER-------FRTITSTYYRGT 79 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh-------HHHHHHHHhCCC
Confidence 4799999999999999999998643222122222233334455555 5788999999754 333445677889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ ..++..+..++..+.... ...|.++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 80 ~~iilv~D~~~-------~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 148 (199)
T cd04110 80 HGVIVVYDVTN-------GESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQM-GISLFETS 148 (199)
T ss_pred cEEEEEEECCC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEEE
Confidence 99999999987 356666777776665433 368999999999986532 2222333333 47899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.||++++++|...+..
T Consensus 149 a~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 149 AKENINVEEMFNCITELVLR 168 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999877644
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=1.2e-17 Score=152.36 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=105.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe---CCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---DDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~---~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|||||||+++++.... +..+|..+.....-.+.. .+..+.+|||||..+ +...+...+..|
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 76 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-------LRPLWKSYTRCT 76 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHh-------HHHHHHHHhccC
Confidence 689999999999999999987543 223333222222222322 236899999999754 334455567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHH---Hc--CCCcEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELER---RV--QGVPIY 386 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~---~~--~~~~ii 386 (423)
|++++|+|+++. .++.....++.++..+.. ..+.|+++|+||+|+... .+..+.+.. .. ...+++
T Consensus 77 d~ii~v~D~~~~-------~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 77 DGIVFVVDSVDV-------ERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEE
Confidence 999999998862 344555555555544322 247899999999998642 121222221 11 124588
Q ss_pred EEecccCcCHHHHHHHHHHHhcc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
++||++++|+++++++|.+.+.+
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EeecccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887743
No 99
>PTZ00369 Ras-like protein; Provisional
Probab=99.77 E-value=1.3e-17 Score=152.78 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=110.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||++++.+.... ..+..|+-......+.+++ ..+.+|||||..+ +...+..++..+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE-------YSAMRDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc-------chhhHHHHhhcC
Confidence 37999999999999999999976432 2333333222334455555 4677899999865 333344567789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ ..+++....+..++..+.. ..+.|.|+|+||+|+.... .....+.+.+ +.+++.+|
T Consensus 78 d~iilv~D~s~-------~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~-~~~~~e~S 148 (189)
T PTZ00369 78 QGFLCVYSITS-------RSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSF-GIPFLETS 148 (189)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHh-CCEEEEee
Confidence 99999999987 3556677777766654421 2367999999999986432 1122333333 46899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++.+|.+.+...
T Consensus 149 ak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 149 AKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998777544
No 100
>PLN03110 Rab GTPase; Provisional
Probab=99.77 E-value=1.1e-17 Score=156.77 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=117.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|++||.+|+|||||+++|++........+....+.....+.+++ ..+.+|||||..+ +...+..+++.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhCCC
Confidence 3899999999999999999998765444444444455556666666 5789999999765 334445677889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ ..+++.+..|+..+..+.. .+.|+++|+||+|+... .+....+...+ ..+++++|
T Consensus 86 ~~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-~~~~~e~S 155 (216)
T PLN03110 86 VGALLVYDITK-------RQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-GLSFLETS 155 (216)
T ss_pred CEEEEEEECCC-------hHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 3567777777776655422 36899999999998543 23344454443 67899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|++++++.|...+.+
T Consensus 156 A~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877744
No 101
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=167.44 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=127.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccccc----chHHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG----LGHAFLRH 309 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~----l~~~fl~~ 309 (423)
.-+|+|||.||+|||||+|+|++.+. -+++.++||.++..-.+.+++..+.++||+|+-+......+ -....++.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 45899999999999999999999854 57899999999999999999999999999998764332211 12234688
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-----HHHHHHHHHc---C
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV---Q 381 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-----~~~~~l~~~~---~ 381 (423)
+++|+++++|+|++.+ ..++...+...+.. ..++.|||+||+|+...+ +..+.+...+ .
T Consensus 258 I~~a~vvllviDa~~~--------~~~qD~~ia~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 258 IERADVVLLVIDATEG--------ISEQDLRIAGLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred HhhcCEEEEEEECCCC--------chHHHHHHHHHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc
Confidence 9999999999999973 23444444433322 379999999999987642 2233444444 4
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..++++|||+++.++.+|++.+.+..+.+.
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 678999999999999999999988876553
No 102
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=3.1e-17 Score=145.50 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=107.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||+++|++.+......+..........+.+++ ..+.+||+||..+ +......++..+|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 75 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYYRGAA 75 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHhccCC
Confidence 789999999999999999998754332222222122234445554 5788999999754 2222234567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....++..+..... ...|.++|+||+|+... .+....+.... +.+++++||
T Consensus 76 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd01860 76 AAIVVYDITS-------EESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADEN-GLLFFETSA 145 (163)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHc-CCEEEEEEC
Confidence 9999999986 2556666777666654321 46889999999998732 12223333333 478999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|+++++++|.+.+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 146 KTGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 103
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=2.3e-17 Score=145.31 Aligned_cols=158 Identities=28% Similarity=0.325 Sum_probs=109.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc-ccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-RGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~-~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.... +.+.+.+|.......+...+..+.++||||+....... ..+.......+..+|
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 84 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVD 84 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999987543 34455566555555555566889999999987643321 112233456678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC-hHH---HHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-AEE---VYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~-~~~---~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++.. ......+...+..+ +.|.++|+||+|+.. ... ..+.+....+..+++++|+
T Consensus 85 ~i~~v~d~~~~~--------~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 85 LVLFVVDASEPI--------GEGDEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred EEEEEEECCCcc--------CchHHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 999999998731 11122233333222 689999999999984 332 2333444334568999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|++++++.|.+.+
T Consensus 152 ~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 152 LKGENVDELLEEIVKYL 168 (168)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999997753
No 104
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=2.3e-17 Score=149.41 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=109.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCC----------------cccceecceEEEEEeCCeeEEEEcCCCCcCCccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGH----------------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR 300 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~----------------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~ 300 (423)
+|+++|.+|||||||+++|++....... ...+|.......+.+....+.++||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------ 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH------
Confidence 4899999999999999999887443221 234556666666777778999999999864
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHH
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELE 377 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~ 377 (423)
+...+..++..+|++++|+|+++.. . .....++..+.. .+.|.++|+||+|+.... ...+.+.
T Consensus 75 -~~~~~~~~~~~~d~~i~v~d~~~~~-------~-~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~~ 140 (189)
T cd00881 75 -FSSEVIRGLSVSDGAILVVDANEGV-------Q-PQTREHLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREIK 140 (189)
T ss_pred -HHHHHHHHHHhcCEEEEEEECCCCC-------c-HHHHHHHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHHH
Confidence 4445667788999999999988632 1 122223333322 479999999999997632 2233333
Q ss_pred HHc----------------CCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 378 RRV----------------QGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 378 ~~~----------------~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+.+ ...+++++||+++.|+++++++|...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 141 ELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 322 2478999999999999999999998874
No 105
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=2.2e-17 Score=170.49 Aligned_cols=163 Identities=24% Similarity=0.296 Sum_probs=120.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch----HHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRH 309 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~----~~fl~~ 309 (423)
..+|+++|.+|+|||||+|+|++.. ..+.+++++|.+.....+.+.+..+.++||||+....+....+. ...+++
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 4589999999999999999999875 35688899999888777888888999999999876544332221 223567
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHc---CCC
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV---QGV 383 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~---~~~ 383 (423)
+..+|++++|+|++... ... ...+...+.. ..+|.|+|+||+|+...+ +..+.+...+ ...
T Consensus 253 ~~~ad~~ilViD~~~~~-------~~~-~~~i~~~~~~-----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 319 (435)
T PRK00093 253 IERADVVLLVIDATEGI-------TEQ-DLRIAGLALE-----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYA 319 (435)
T ss_pred HHHCCEEEEEEeCCCCC-------CHH-HHHHHHHHHH-----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCC
Confidence 88999999999998732 222 2233333322 268999999999998543 2333444433 357
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++++||+++.|++++++.+.+....+
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999988766543
No 106
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=1.4e-17 Score=181.30 Aligned_cols=156 Identities=24% Similarity=0.389 Sum_probs=119.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHH-H--Hh
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLR-H--IE 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~-~--i~ 311 (423)
+|+++|.||||||||+|+|++.+..+++++++|.+...+.+.+++..+.++||||+.+..... ..+.....+ + .+
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~ 84 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSG 84 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhcc
Confidence 799999999999999999999988999999999999999999988999999999997643211 122222222 2 24
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~v 388 (423)
.+|++++|+|+++. ... ..+..++.. .+.|.++|+||+|+.... ...+.+++.+ +.+++++
T Consensus 85 ~aD~vI~VvDat~l---------er~-l~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~L-G~pVvpi 148 (772)
T PRK09554 85 DADLLINVVDASNL---------ERN-LYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARL-GCPVIPL 148 (772)
T ss_pred CCCEEEEEecCCcc---------hhh-HHHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHh-CCCEEEE
Confidence 78999999998762 111 223344433 268999999999986432 3355666665 6799999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||++++|++++.+.+.+..+
T Consensus 149 SA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred EeecCCCHHHHHHHHHHhhh
Confidence 99999999999999988764
No 107
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=1.6e-17 Score=152.55 Aligned_cols=152 Identities=29% Similarity=0.370 Sum_probs=105.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcC-------CCCCCCcccceecceEEEEEeC--------------CeeEEEEcCCCCcCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA-------KPAVGHYSFTTLRPNLGNMNFD--------------DIQITVADIPGLIKG 295 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~-------~~~i~~~~ftTl~~~~g~v~~~--------------~~~i~l~DtpG~i~~ 295 (423)
+|+++|.+|+|||||+++|++. .......+.+|.+.....+.+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6899999999999999999873 1112334456777666555554 57899999999843
Q ss_pred ccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---H
Q 014494 296 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---V 372 (423)
Q Consensus 296 a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~ 372 (423)
+...+......+|.+++|+|++... .......+ .... ....|.++|+||+|+..... .
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~-------~~~~~~~~-~~~~-----~~~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGI-------QTQTAECL-VIGE-----ILCKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCc-------cHHHHHHH-HHHH-----HcCCCEEEEEECcccCCHHHHHHH
Confidence 4455566677789999999998631 11111111 1111 12679999999999975322 2
Q ss_pred HHHHHH----H-----cCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 373 YEELER----R-----VQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 373 ~~~l~~----~-----~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.+.+++ . ....+++++||++++|+++|++.|...+.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 233322 2 23568999999999999999999987764
No 108
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=1.4e-17 Score=171.44 Aligned_cols=160 Identities=26% Similarity=0.311 Sum_probs=116.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch-HHHHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRH 309 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~-~~fl~~ 309 (423)
++...+|+|+|.||||||||+|+|++.. ..+.++++||.++....+.+++..+.+|||||+.+....-...+ .....+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4566799999999999999999999875 45789999999999999999999999999999865322100111 123467
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEe
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vS 389 (423)
++.+|++++|+|+++. ...... ++.++.. .+.|+|+|+||+|+... + .+.+.+.+ +.+++.+|
T Consensus 280 ~~~aD~il~V~D~s~~-------~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~vS 342 (442)
T TIGR00450 280 IKQADLVIYVLDASQP-------LTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSNLS 342 (442)
T ss_pred HhhCCEEEEEEECCCC-------CChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEEEE
Confidence 8899999999999863 222322 3333321 36899999999999754 2 22333332 45789999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|++ .|++++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 5788877777766654
No 109
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.76 E-value=2.2e-17 Score=147.24 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=109.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+........+....+.....+.+.+ ..+.+|||+|... +......++..+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~~~ 74 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER-------YQTITKQYYRRAQ 74 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh-------HHhhHHHHhcCCc
Confidence 689999999999999999987644322222222223334555655 5678999999754 2223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++..+..++.++..+. ..+.|.++|.||+|+.... +....+.+.. +.+++++||
T Consensus 75 ~~i~v~d~~~-------~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa 144 (161)
T cd04117 75 GIFLVYDISS-------ERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDFFETSA 144 (161)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEeC
Confidence 9999999987 366777777777775543 2368999999999986432 2334444444 468999999
Q ss_pred ccCcCHHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRML 406 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~ 406 (423)
+++.|+++++.+|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998765
No 110
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.76 E-value=4.5e-17 Score=146.80 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=109.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|++||.+|+|||||++++.+.... ..|..| ..+.....+.+.+ ..+.+|||||..+ +......++..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-------FKCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHhhHHHHhcCC
Confidence 6899999999999999999986432 333222 2333334555555 5789999999865 333345668899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH------HHHHHHHHcCCCcEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------VYEELERRVQGVPIYP 387 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~------~~~~l~~~~~~~~ii~ 387 (423)
|++++|+|+++ ..++.....|+.++..... -...|.|+|+||+|+..... ....+.+.+ ..+++.
T Consensus 74 d~~ilv~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~e 144 (170)
T cd04108 74 QAIIIVFDLTD-------VASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-QAEYWS 144 (170)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-CCeEEE
Confidence 99999999986 3566667777766643211 12457899999999864321 122333333 457899
Q ss_pred EecccCcCHHHHHHHHHHHhcc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+||+++.|+++++..|.+++.+
T Consensus 145 ~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 145 VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999888754
No 111
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=3.6e-17 Score=149.89 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=108.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecc-eEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRP-NLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~-~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|+|||||++++++.+.....|..|+-.. ....+.+++ ..+.+|||||..+.. .....++..+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE-------AMSRIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHhhcCCC
Confidence 689999999999999999998765544454433222 233456666 456799999975421 1222346789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--------HHHHHHHHHcCCCcE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------EVYEELERRVQGVPI 385 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--------~~~~~l~~~~~~~~i 385 (423)
|++++|+|+++ ..+++....|+.++.... .+.|+++|+||+|+.... +....+...+ ..++
T Consensus 75 d~iilv~d~~~-------~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-~~~~ 143 (193)
T cd04118 75 KAAIVCYDLTD-------SSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-KAQH 143 (193)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-CCeE
Confidence 99999999987 355666666666665432 268999999999986421 1122333333 4678
Q ss_pred EEEecccCcCHHHHHHHHHHHhcc
Q 014494 386 YPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+++||+++.|+++|+++|.+.+.+
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987744
No 112
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=4.1e-17 Score=156.02 Aligned_cols=158 Identities=16% Similarity=0.175 Sum_probs=112.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+.... ..|..|+-+.....+.+++ ..+.||||+|... +......++..+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~-------~~~~~~~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP-------FPAMRRLSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh-------hhHHHHHHhccCC
Confidence 6899999999999999999875432 3455554445555666666 5778999999754 2222223467899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhh-------cccCCCCeEEEEeCCCcCChH-HHHHHHHHHc---CCC
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ-------EGLSDRPSLVVANKIDEDGAE-EVYEELERRV---QGV 383 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~-------~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~---~~~ 383 (423)
++++|+|+++ ..+++.+..+..++..+. ....+.|+|+|+||+|+.... ...+.+.+.. ...
T Consensus 74 ~iIlVfdv~~-------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~ 146 (247)
T cd04143 74 VFILVFSLDN-------RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC 146 (247)
T ss_pred EEEEEEeCCC-------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC
Confidence 9999999987 366777777777775432 123478999999999996421 1122232222 246
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
.++++||+++.|+++++++|.++...
T Consensus 147 ~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 147 AYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 79999999999999999999987643
No 113
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=1.4e-17 Score=171.55 Aligned_cols=160 Identities=24% Similarity=0.322 Sum_probs=119.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~ad 314 (423)
+|+|||.||+|||||+|+|++.+. .+.+++++|.+...+.+.+.+..+.++||||+...... ...+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999764 46789999999999999999999999999998542211 1123344566788999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEE 394 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~ 394 (423)
++++|+|+.... . .....+...+.. .++|+++|+||+|+...+.....+.+. .-.+++++||+++.
T Consensus 81 ~vl~vvD~~~~~------~--~~d~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~~~~~~l-g~~~~~~vSa~~g~ 146 (429)
T TIGR03594 81 VILFVVDGREGL------T--PEDEEIAKWLRK-----SGKPVILVANKIDGKKEDAVAAEFYSL-GFGEPIPISAEHGR 146 (429)
T ss_pred EEEEEEeCCCCC------C--HHHHHHHHHHHH-----hCCCEEEEEECccCCcccccHHHHHhc-CCCCeEEEeCCcCC
Confidence 999999998632 1 122233333433 278999999999987654333333332 23378999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 014494 395 GVPELKVGLRMLVNGE 410 (423)
Q Consensus 395 gi~eL~~~i~~~l~~~ 410 (423)
|++++++.+.+.+.+.
T Consensus 147 gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 147 GIGDLLDAILELLPEE 162 (429)
T ss_pred ChHHHHHHHHHhcCcc
Confidence 9999999999988654
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=3.7e-17 Score=143.91 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=112.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||++++++.. ....+..++.+.....+.+++ ..+.+||+||... +.......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE-------FSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHHhcCC
Confidence 48999999999999999999865 556666666666666676664 5788999999765 3333445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....+...+...... ...|.++|+||+|+.... +....+...+ ..+++++||
T Consensus 73 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~ 143 (160)
T cd00876 73 GFILVYSITD-------RESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEW-GCPFIETSA 143 (160)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHc-CCcEEEecc
Confidence 9999999987 24566666666665443221 368999999999987622 2222233322 368999999
Q ss_pred ccCcCHHHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLRML 406 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~ 406 (423)
+++.|+++++++|.+.
T Consensus 144 ~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 144 KDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 115
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=2.5e-17 Score=147.78 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=105.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEE--EeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNM--NFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v--~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|+++|.+|||||||++++...... ..+. .|.......+ ..++ ..+.+|||||...... + ...++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----L---RDGYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----c---cHHHhcC
Confidence 6899999999999999999854322 1122 2222222222 2222 6789999999865221 1 1235678
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcCCCcEEEEec
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~~~~ii~vSA 390 (423)
+|++++|+|+++ ..++..+..+..++..+.. +.|.++|+||+|+.... .....+.+. ...+++++||
T Consensus 73 ~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~e~Sa 141 (166)
T cd00877 73 GQCAIIMFDVTS-------RVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQITFHRK-KNLQYYEISA 141 (166)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHHHHHHH-cCCEEEEEeC
Confidence 999999999987 3566667777777765432 79999999999997432 111122222 3567999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
++++|+++++++|.+.+.+
T Consensus 142 ~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 142 KSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCCCChHHHHHHHHHHHHh
Confidence 9999999999999977754
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.76 E-value=1.4e-17 Score=147.34 Aligned_cols=151 Identities=28% Similarity=0.361 Sum_probs=102.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
+|+++|.+|||||||++++++.... ... .|.......+.++ ...+.+|||||... +...+..++..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTI--PTVGFNVEMLQLEKHLSLTVWDVGGQEK-------MRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-ccc--CccCcceEEEEeCCceEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 4789999999999999999986532 222 2222333444444 36899999999854 44455667889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHH--HHc--CCCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELE--RRV--QGVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~--~~~--~~~~ii~v 388 (423)
+++|+|+++. ........++.++... ..+.+.|+++|+||+|+... +++...+. ... .+.+++++
T Consensus 71 iv~v~D~~~~-------~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 71 LVYVVDSSDE-------ARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred EEEEEECCcH-------HHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEec
Confidence 9999999862 3344444444443221 22357999999999998642 23322221 111 13468999
Q ss_pred ecccCcCHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRM 405 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~ 405 (423)
||++++|+++++++|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
No 117
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.76 E-value=2.6e-17 Score=148.97 Aligned_cols=154 Identities=27% Similarity=0.323 Sum_probs=104.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|+|||||++++..... . ++. .|.......+.+....+.+|||||..+ +...+..+++.|++
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ad~ 83 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYKNISFTVWDVGGQDK-------IRPLWRHYYTNTQG 83 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEECCEEEEEEECCCChh-------hHHHHHHHhCCCCE
Confidence 3799999999999999999964332 1 222 233333345666778899999999865 33345566899999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-c--CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-~--~~~~ii~vS 389 (423)
+++|+|+++. ..+.....++.++... ..+.+.|++||+||+|+... .++.+.+... . ....++++|
T Consensus 84 ii~v~D~t~~-------~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 155 (175)
T smart00177 84 LIFVVDSNDR-------DRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC 155 (175)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 9999999872 4455555544444221 12346899999999998753 2222222110 0 123467899
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|++|+|+++++++|.+.+
T Consensus 156 a~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 156 ATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=2.3e-17 Score=148.16 Aligned_cols=151 Identities=25% Similarity=0.318 Sum_probs=107.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|++|||||||+++|++. ....+ ..|+......+.+.+..+.++||||... +...+..+++.|+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~~-~~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~a~~i 70 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKKV-APTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYYAEAHGL 70 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCccc-cCcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHHcCCCEE
Confidence 4789999999999999999976 22222 2334444556777788999999999754 444567788999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHH--HHHc----CCCcEEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEEL--ERRV----QGVPIYP 387 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l--~~~~----~~~~ii~ 387 (423)
++|+|+++. ..+.....++..+... ..+.+.|+++|+||+|+.... ++.+.+ .+.. ....+++
T Consensus 71 i~V~D~s~~-------~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 71 VFVVDSSDD-------DRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred EEEEECCch-------hHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 999999872 4455555555555432 234578999999999997643 222221 1111 1246788
Q ss_pred EecccC------cCHHHHHHHHHH
Q 014494 388 VCAVLE------EGVPELKVGLRM 405 (423)
Q Consensus 388 vSA~~g------~gi~eL~~~i~~ 405 (423)
+||++| .|+++.++||.+
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHhc
Confidence 999998 899999999864
No 119
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=3.6e-17 Score=149.51 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=110.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++++........+..+.+.....+.+++ ..+.+|||||... +...+...++.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-------FRSLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-------HHhhHHHHccCCC
Confidence 689999999999999999997654322222222333334455554 5678999999754 2223456678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++..+..|+.++..+.. ...|.|+|+||+|+.... +....+.+.. +.+++.+||
T Consensus 75 ~iilv~d~~~-------~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa 144 (188)
T cd04125 75 GYLLVYDVTD-------QESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL-NIPFFETSA 144 (188)
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 3567777777777765532 357899999999987432 2223333333 558999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|++++++++.+.+..
T Consensus 145 ~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 145 KQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999988877654
No 120
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=2.5e-17 Score=170.02 Aligned_cols=159 Identities=23% Similarity=0.285 Sum_probs=116.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-ccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~l~~~fl~~i~~a 313 (423)
++|+|||.+|||||||+|+|++.+. .+.+++++|.+...+.+.+++..+.++||||+..... ....+......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998765 4688999999999999999999999999999976221 1111333455678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
|++++|+|+++.. ... ...+...+.. ..+|+|+|+||+|..........+... ....++++||+++
T Consensus 82 d~il~vvd~~~~~------~~~--~~~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~~~~~l-g~~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGL------TPA--DEEIAKILRK-----SNKPVILVVNKVDGPDEEADAYEFYSL-GLGEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCC------CHH--HHHHHHHHHH-----cCCcEEEEEECccCccchhhHHHHHhc-CCCCCEEEEeeCC
Confidence 9999999998631 111 1122233332 278999999999976543333333222 2235799999999
Q ss_pred cCHHHHHHHHHHHhc
Q 014494 394 EGVPELKVGLRMLVN 408 (423)
Q Consensus 394 ~gi~eL~~~i~~~l~ 408 (423)
.|++++++.|.....
T Consensus 148 ~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 148 RGIGDLLDAILEELP 162 (435)
T ss_pred CCHHHHHHHHHhhCC
Confidence 999999999987443
No 121
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=4.4e-17 Score=147.60 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=107.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|++||.+|+|||||++++..... ..+|..|+.+.....+.+++ ..+.+|||+|..+.. .....++..+|
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a~ 74 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLRPLSYPQTD 74 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-------hhhhhhcccCC
Confidence 689999999999999999987543 34454444333333455666 678899999986521 12233567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l~ 377 (423)
++++|+|+++ ..++.... .|..++.... .+.|.|+|+||+|+....+.. +.+.
T Consensus 75 ~~ilv~d~~~-------~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 75 VFLVCFSVVS-------PSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 9999999987 35666665 4666665443 368999999999986543221 2233
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
+......++++||++|.|++++++.+...
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33334679999999999999999988763
No 122
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=4.8e-17 Score=148.30 Aligned_cols=155 Identities=25% Similarity=0.286 Sum_probs=106.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|.++|..|||||||+++++..... .+ ..|.......+.+.+..+.+|||||..+ +...+..++..+|+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~~~~~~~~~a~~ 87 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQG 87 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhccCCE
Confidence 37999999999999999999854321 22 2233344445667778999999999754 44455667899999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc--C-----CCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--Q-----GVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~--~-----~~~ii~v 388 (423)
+++|+|+++. ..+......+..+.. ...+.+.|.+||+||+|+..... .+.+.+.+ . ...++++
T Consensus 88 iI~V~D~s~~-------~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~ 158 (181)
T PLN00223 88 LIFVVDSNDR-------DRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQST 158 (181)
T ss_pred EEEEEeCCcH-------HHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEEec
Confidence 9999999872 334433333332211 12335789999999999875432 22333332 1 1235679
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||++|+|+++++++|.+.+..
T Consensus 159 Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 159 CATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999877653
No 123
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.75 E-value=1e-17 Score=159.05 Aligned_cols=161 Identities=27% Similarity=0.344 Sum_probs=119.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc-----cchHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR-----GLGHAFLRHI 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~-----~l~~~fl~~i 310 (423)
.|++||.||||||||.|.+.|.+.. ++...-||.....|.+.-+..+++|+||||++...+... .+....+..+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~ 153 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAA 153 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHH
Confidence 7999999999999999999998764 677888999999999999999999999999998543211 1122345678
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHH----------------
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE---------------- 374 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~---------------- 374 (423)
..||+++.|+|+++... +. --.++..|..| .+.|.|+|+||+|.......+-
T Consensus 154 q~AD~vvVv~Das~tr~------~l--~p~vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 154 QNADCVVVVVDASATRT------PL--HPRVLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hhCCEEEEEEeccCCcC------cc--ChHHHHHHHHH----hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 89999999999996311 11 11234445555 3799999999999876542221
Q ss_pred HHHHHcCCC----------------cEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 375 ELERRVQGV----------------PIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 375 ~l~~~~~~~----------------~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
.+++.+... .+|+|||++|+||++|.++|....+.
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 223333222 39999999999999999999876653
No 124
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=5.3e-17 Score=147.91 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=108.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-C--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|+|||||++++.+.... ..+..|+.......+... + ..+.+|||||..+ +......++..+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~a 73 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-------YDRLRPLSYPDV 73 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-------HHHHHHHhCCCC
Confidence 6899999999999999999986443 334444433334445554 3 5789999999754 222233456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCCh--------HHHHHHHHHHcCCCc
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGA--------EEVYEELERRVQGVP 384 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--------~~~~~~l~~~~~~~~ 384 (423)
|++++|+|+++ ..+++.+. .|..++..+. .+.|.|+|+||+|+... .+..+.+...+...+
T Consensus 74 d~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 74 DVLLICYAVDN-------PTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 99999999987 35555554 3444444332 36899999999998652 222334444443337
Q ss_pred EEEEecccCcCHHHHHHHHHHHhccc
Q 014494 385 IYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
++.+||+++.|+++++..+.+.+...
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 89999999999999999998776544
No 125
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.75 E-value=1.9e-17 Score=151.68 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=110.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCC------------------CcccceecceEEEEE--eCCeeEEEEcCCCCcCC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVG------------------HYSFTTLRPNLGNMN--FDDIQITVADIPGLIKG 295 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~------------------~~~ftTl~~~~g~v~--~~~~~i~l~DtpG~i~~ 295 (423)
..|+++|+.++|||||+.+|+.....+. .....|.+.....+. .....+.++||||+..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 4899999999999999999985422111 112345666666666 6779999999999865
Q ss_pred ccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHH
Q 014494 296 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVY 373 (423)
Q Consensus 296 a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~ 373 (423)
+.......+..+|++++|+|+... ...+....+..+.. .+.|.|+|+||+|+...+ +..
T Consensus 83 ------f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~-----~~~p~ivvlNK~D~~~~~~~~~~ 143 (188)
T PF00009_consen 83 ------FIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRE-----LGIPIIVVLNKMDLIEKELEEII 143 (188)
T ss_dssp ------HHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHH-----TT-SEEEEEETCTSSHHHHHHHH
T ss_pred ------eeecccceecccccceeeeecccc--------cccccccccccccc-----cccceEEeeeeccchhhhHHHHH
Confidence 555667778899999999999863 22444455555544 378999999999998432 233
Q ss_pred HHHHHH----c--C---CCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 374 EELERR----V--Q---GVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 374 ~~l~~~----~--~---~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+.+.+. + . ..+++++||.+|.|+++|++.|.+.++
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 333322 2 2 357999999999999999999998875
No 126
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=6.7e-17 Score=150.81 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=111.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||+|... +......++..+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHhccC
Confidence 4799999999999999999998754433333333344455666666 4678999999764 333345667789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++..+..+. ....|+++|+||+|+.... +..+.+.+.+ +.+++++|
T Consensus 80 d~~vlv~D~~~-------~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 149 (210)
T PLN03108 80 AGALLVYDITR-------RETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH-GLIFMEAS 149 (210)
T ss_pred CEEEEEEECCc-------HHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHHHc-CCEEEEEe
Confidence 99999999987 356666666666554432 2368999999999986532 2233344433 56899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|+++.|+++++.++.+.+.
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999887776553
No 127
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.5e-17 Score=148.86 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=127.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
....+|.|+|..|+|||+|+.++++....-.......++.....+.+++ ..+.+|||+|+.+ +...+..++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER-------Frtit~syY 79 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQER-------FRTITSSYY 79 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHH-------HhhhhHhhc
Confidence 3445899999999999999999998643322222233566677788887 6789999999976 556678899
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCc-E
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVP-I 385 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~-i 385 (423)
+.|+.+|+|+|+++ ..++..+..|+.|+..|.. .+.|.++|.||+|+.+.. +..+.++..+ +.+ +
T Consensus 80 R~ahGii~vyDiT~-------~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~-~~~~f 149 (205)
T KOG0084|consen 80 RGAHGIIFVYDITK-------QESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL-GIPIF 149 (205)
T ss_pred cCCCeEEEEEEccc-------HHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhc-CCcce
Confidence 99999999999998 5889999999999988753 468999999999997653 2234455554 455 9
Q ss_pred EEEecccCcCHHHHHHHHHHHhccc
Q 014494 386 YPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++||+...|+++.+..|...+...
T Consensus 150 ~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 150 LETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred eecccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999999998888777543
No 128
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.75 E-value=4.4e-17 Score=146.38 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=110.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|++|+|||||+++++.........+..+.+.....+.+++ ..+.+|||||..+... ..+...+..+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK------SMVQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH------hhHHHhhcCC
Confidence 3799999999999999999987643322222222333344556666 6789999999754110 1223456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..|+.++..+.. ..+.|.|+|+||+|+.... +..+.+.+.. ..+++++|
T Consensus 77 d~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (170)
T cd04115 77 HAVVFVYDVTN-------MASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETS 147 (170)
T ss_pred CEEEEEEECCC-------HHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEe
Confidence 99999999987 3567777777777765421 2468999999999986433 2333444443 57899999
Q ss_pred ccc---CcCHHHHHHHHHHHh
Q 014494 390 AVL---EEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~---g~gi~eL~~~i~~~l 407 (423)
|++ +.++++++..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 889999998887655
No 129
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.75 E-value=8.3e-17 Score=145.63 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=111.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|++|||||||++++++... +..+..++.......+.+++ ..+.++||||+.+ +.......+..++
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 74 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE-------YSILPQKYSIGIH 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHh-------hHHHHHHHHhhCC
Confidence 799999999999999999997653 33344444444455566655 4578999999864 2223335667899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
.+++|+|+++ ..++.....+...+... ....+.|.|+|+||+|+.... +....+.+.+ ..+++++||
T Consensus 75 ~~i~v~d~~~-------~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (180)
T cd04137 75 GYILVYSVTS-------RKSFEVVKVIYDKILDM-LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESW-GAAFLESSA 145 (180)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHc-CCeEEEEeC
Confidence 9999999987 24555666655555432 123468999999999986432 1223344433 468999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++.|+++++.++.+.+....
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 146 RENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999998876554
No 130
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.75 E-value=5e-17 Score=146.79 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=108.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++...... ..+..|+-......+.+++ ..+.+|||||..+ +...+..++..++
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~l~~~~~~~~d 75 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE-------FTAMRDQYMRCGE 75 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCEEEEEEEEeCCCchh-------hHHHhHHHhhcCC
Confidence 6899999999999999999875432 2232222222223455555 5688999999865 2233445677899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....+...+.... ...+.|.|+|+||+|+.... +....+.+.. +.+++++||
T Consensus 76 ~~ilv~d~~~-------~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~Sa 146 (172)
T cd04141 76 GFIICYSVTD-------RHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETSA 146 (172)
T ss_pred EEEEEEECCc-------hhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEec
Confidence 9999999987 366777666655554432 12368999999999986432 2223343333 578999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.||++++++|...+.+
T Consensus 147 ~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 147 ALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876643
No 131
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=7e-17 Score=149.11 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=109.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++.+.... ..|..|+.......+.+.+ ..+.+|||||.... ......++..+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAMRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHHHHHHhhcCC
Confidence 4899999999999999999886433 3454454444455666666 57889999997652 222234678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-H-----HHHHHHHHHcCCCcEEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-E-----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-~-----~~~~~l~~~~~~~~ii~v 388 (423)
++++|+|+++ ..++.....+...+..+.. ..+.|.|+|+||+|+... . ...+.. ....+.+++.+
T Consensus 73 ~vilv~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~ 143 (198)
T cd04147 73 AFALVYAVDD-------PESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVET 143 (198)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEe
Confidence 9999999987 3556666666666654422 246899999999998652 1 111111 11124578999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||+++.|+++++++|.+.+.
T Consensus 144 Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 144 SAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999988765
No 132
>PLN03118 Rab family protein; Provisional
Probab=99.75 E-value=5.4e-17 Score=151.37 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=107.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|++||.+|||||||+++|++..... ..+..+.+.....+.+++ ..+.+|||||..+ +......+++.+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 86 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER-------FRTLTSSYYRNA 86 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHHhcC
Confidence 479999999999999999998764321 112222223334455554 5789999999865 333344567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHH-HHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRD-LIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~-l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++ ..++..+.. +...+..+. .....|.|+|+||+|+.... +....+.... ..+++++
T Consensus 87 d~~vlv~D~~~-------~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~-~~~~~e~ 157 (211)
T PLN03118 87 QGIILVYDVTR-------RETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEH-GCLFLEC 157 (211)
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccCccCHHHHHHHHHHc-CCEEEEE
Confidence 99999999987 345555554 333343332 22357899999999986432 2222233322 4678999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||+++.|+++++++|...+.+.
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999777543
No 133
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=4.4e-17 Score=153.09 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=106.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|++||.+|+|||||++++..........+....+...-.+..++ ..+.+|||+|.... ...+..++..++
T Consensus 15 Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~~ 87 (219)
T PLN03071 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHGQ 87 (219)
T ss_pred EEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------hhhhHHHccccc
Confidence 799999999999999999876533221111111122222233333 68899999998652 222334577899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++|+|+|+++ ..++..+..|+.++..+. .+.|+++|+||+|+.... +.. .+.+. ...+++.+||+
T Consensus 88 ~~ilvfD~~~-------~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-~~~~~~e~SAk 155 (219)
T PLN03071 88 CAIIMFDVTA-------RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEISAK 155 (219)
T ss_pred EEEEEEeCCC-------HHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHh-cCCEEEEcCCC
Confidence 9999999997 356777777777776543 478999999999986431 112 22222 35679999999
Q ss_pred cCcCHHHHHHHHHHHhcc
Q 014494 392 LEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~ 409 (423)
++.|+++++.+|.+.+.+
T Consensus 156 ~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 156 SNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCCHHHHHHHHHHHHHc
Confidence 999999999999877654
No 134
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=8.5e-17 Score=150.30 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=111.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-C--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|+|||||++++++........+..+.+.....+.+. + ..+.+|||||... +......++..+
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 76 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-------FRSITRSYYRNS 76 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-------HHHHHHHHhcCC
Confidence 79999999999999999999865433323333333334445443 3 5789999999754 333344567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++..... ....|.++|+||+|+.... +....+.+.+ +.+++.+|
T Consensus 77 d~iilv~D~~~-------~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 147 (211)
T cd04111 77 VGVLLVFDITN-------RESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDL-GMKYIETS 147 (211)
T ss_pred cEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHh-CCEEEEEe
Confidence 99999999987 3566777777766654321 1346778899999986532 2334455544 47899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|++++++.|.+.+.+.
T Consensus 148 ak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 148 ARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998766543
No 135
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=8e-17 Score=146.99 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=109.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccce-ecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftT-l~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|+|||||++++.+.... ..|..|. .+.....+.+++ ..+.+|||+|..+ +...+..++..+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~-------~~~~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE-------FINMLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchh-------HHHhhHHHCcCC
Confidence 6899999999999999999875432 2333222 223334566666 5789999999865 222334567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC----hH--HH---HHHHHHHcCCCc
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG----AE--EV---YEELERRVQGVP 384 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~----~~--~~---~~~l~~~~~~~~ 384 (423)
+++++|+|+++ ..++..+..|+.++..+.+ ...| |+|+||+|+.. .+ .. .+.+.+.. +.+
T Consensus 74 ~~iilv~D~t~-------~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~ 142 (182)
T cd04128 74 VAILFMFDLTR-------KSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM-KAP 142 (182)
T ss_pred CEEEEEEECcC-------HHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc-CCE
Confidence 99999999987 3567777777777765433 2345 78899999852 11 11 22333333 468
Q ss_pred EEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 385 IYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
++++||+++.|++++++++.+.+.+.+
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999988776544
No 136
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=7.3e-17 Score=140.23 Aligned_cols=155 Identities=29% Similarity=0.309 Sum_probs=113.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeE
Q 014494 240 LVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 317 (423)
Q Consensus 240 LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll 317 (423)
++|++|||||||+++|++.... ...++.+|..+......+. ...+.++||||+.............+...+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987655 6777788888777776665 5789999999998755543333345566778899999
Q ss_pred EEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHH------HHHHcCCCcEEEEecc
Q 014494 318 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE------LERRVQGVPIYPVCAV 391 (423)
Q Consensus 318 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~------l~~~~~~~~ii~vSA~ 391 (423)
+|+|++... ...... +..... ....|.++|+||+|+......... ........+++++||.
T Consensus 81 ~v~~~~~~~-------~~~~~~-~~~~~~-----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 81 FVVDADLRA-------DEEEEK-LLELLR-----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred EEEeCCCCC-------CHHHHH-HHHHHH-----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 999998742 222222 222222 137999999999999876543332 1122256789999999
Q ss_pred cCcCHHHHHHHHHHHh
Q 014494 392 LEEGVPELKVGLRMLV 407 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l 407 (423)
++.|++++++++.+.+
T Consensus 148 ~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 148 TGEGIDELREALIEAL 163 (163)
T ss_pred ccCCHHHHHHHHHhhC
Confidence 9999999999988653
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=1.3e-16 Score=138.69 Aligned_cols=154 Identities=23% Similarity=0.187 Sum_probs=106.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|++|||||||+++|++.......++++|.+.....+.+++ ..+.++|+||+... ..........+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY-------RAIRRLYYRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc-------hHHHHHHHhhh
Confidence 3799999999999999999999886566677888877777777887 77899999996552 12222334566
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHH-HHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcCCCcEEEEec
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~~~~ii~vSA 390 (423)
+.++.++|+.... ..... ...+...+...... +.|.++|+||+|+.... .............+++++||
T Consensus 75 ~~~i~~~d~~~~v------~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 75 ESSLRVFDIVILV------LDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred hEEEEEEEEeeee------hhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence 7777788876531 11111 11222333332221 78999999999997642 22222233334567999999
Q ss_pred ccCcCHHHHHHHHH
Q 014494 391 VLEEGVPELKVGLR 404 (423)
Q Consensus 391 ~~g~gi~eL~~~i~ 404 (423)
+++.|+++++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999998874
No 138
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=1e-16 Score=143.59 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=107.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++.+... ...+..++-......+.+++ ..+.+|||||..+. .......+..++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~ 74 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-------TAMRELYIKSGQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-------hhhhHHHHhhCC
Confidence 689999999999999999986542 33344343333334455555 57789999997652 223334567789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
.+++|+|+++ ...++....+..++.... ...+.|.++|+||+|+.... +....+.+.+...+++++||
T Consensus 75 ~~vlv~~~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 75 GFLLVYSVTS-------EASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 9999999987 245666666665554321 23478999999999986532 22233444443468999999
Q ss_pred ccCcCHHHHHHHHHHHh
Q 014494 391 VLEEGVPELKVGLRMLV 407 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l 407 (423)
+++.|++++++++...+
T Consensus 147 ~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 147 RKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987643
No 139
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=5.4e-17 Score=176.87 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=120.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH------H
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF------L 307 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f------l 307 (423)
..+|+++|.+|||||||+|+|++.+. .+.++++||.++....+.+++..+.++||||+.+..... .+..+ .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL--TGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc--hhHHHHHHHHHH
Confidence 46899999999999999999999865 468899999999988888999899999999986533221 11122 3
Q ss_pred HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc---C
Q 014494 308 RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---Q 381 (423)
Q Consensus 308 ~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~---~ 381 (423)
.+++.||++++|+|++.. ....... ++..+.. .++|+|+|+||+|+..... ..+.+...+ +
T Consensus 528 ~~i~~advvilViDat~~-------~s~~~~~-i~~~~~~-----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~ 594 (712)
T PRK09518 528 AAIERSELALFLFDASQP-------ISEQDLK-VMSMAVD-----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVT 594 (712)
T ss_pred HHhhcCCEEEEEEECCCC-------CCHHHHH-HHHHHHH-----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCC
Confidence 457889999999999873 2233322 3333322 3689999999999976432 222333332 3
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..+++++||++|.|+++|++.+.+.+.++.
T Consensus 595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 595 WARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999998887643
No 140
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=4.1e-17 Score=177.85 Aligned_cols=164 Identities=21% Similarity=0.233 Sum_probs=120.5
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-ccccchHHHHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRGLGHAFLRH 309 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~l~~~fl~~ 309 (423)
-...+.|+|+|.||+|||||+|+|++.+. .+.+++++|.+...+...+.+..+.+|||||+..... ....+..+...+
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34567899999999999999999998764 4678999999988888888889999999999864221 111233344567
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEe
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vS 389 (423)
++.||++|+|+|++... ... ...+...|.. .++|+|+|+||+|+.........+... ....+++||
T Consensus 352 ~~~aD~iL~VvDa~~~~------~~~--d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~~~~~~l-g~~~~~~iS 417 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL------TST--DERIVRMLRR-----AGKPVVLAVNKIDDQASEYDAAEFWKL-GLGEPYPIS 417 (712)
T ss_pred HHhCCEEEEEEECCCCC------CHH--HHHHHHHHHh-----cCCCEEEEEECcccccchhhHHHHHHc-CCCCeEEEE
Confidence 88999999999997631 122 2234444432 379999999999987543322222222 223568999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|++|.|+++|+++|.+.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999988865
No 141
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.74 E-value=7.3e-17 Score=144.93 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=105.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
|+++|.+|+|||||++++.+... ...|..++.......+.+++ ..+.+|||||...... .....+..+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-------LRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-------hchhhcCCCCE
Confidence 57999999999999999998643 23333333333334455555 4689999999865221 22235678999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----------------HHHHHHH
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELER 378 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----------------~~~~l~~ 378 (423)
+++|+|+++ ..+++.+. .|+..+..+. .+.|+|+|+||+|+..... ....+.+
T Consensus 73 ~ilv~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (174)
T smart00174 73 FLICFSVDS-------PASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK 142 (174)
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH
Confidence 999999987 24555553 3555555433 3799999999999865321 1223444
Q ss_pred HcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 379 RVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 379 ~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
.+...++++|||+++.|++++++.+.+.+
T Consensus 143 ~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 143 RIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 44334789999999999999999988664
No 142
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=6.5e-17 Score=148.24 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=106.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+.... ..|..|........+..++ ..+.+|||+|...... + ...++..++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----L---RSLSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----c---ccccccCCC
Confidence 6899999999999999999876432 2233332223333444554 5789999999865221 1 123467899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l~ 377 (423)
++++|+|+++ ..++.... .|+.++.... .+.|.|+|+||+|+....... ..+.
T Consensus 74 ~~ilv~dv~~-------~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 74 VIMLCFSVDS-------PDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 35566554 3556665432 378999999999997543211 1222
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+.....+++++||+++.|+++++.+|.+.+..
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 23333679999999999999999999887754
No 143
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.74 E-value=8.7e-17 Score=146.08 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=110.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.++|.+++|||||+.++..... ...|..|.-+.....+.+++ ..+.+|||+|..+... ....++..++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~~~~~~~~a~ 74 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------LRPLSYRGAD 74 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-------cchhhcCCCc
Confidence 689999999999999999997543 33344333233333455555 6789999999865322 2234678999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--------------HHHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------------EVYEELERR 379 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--------------~~~~~l~~~ 379 (423)
++++|+|+++ +.+++.+ ..|+.++..+. .+.|.|||+||+|+.... +..+.+.+.
T Consensus 75 ~~ilvyd~~~-------~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 75 VFVLAFSLIS-------RASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred EEEEEEEcCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 9999999998 4677776 56777776654 368999999999995421 223344444
Q ss_pred cCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 380 VQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 380 ~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.....++.+||+++.||+++++.+.+.+.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 32235899999999999999999988763
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.74 E-value=7.3e-17 Score=147.18 Aligned_cols=156 Identities=26% Similarity=0.295 Sum_probs=105.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|++|+|||||++++..... . .+. +|.......+.+.+..+.+|||||..+ +...+..+++.+|+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~-~-~~~-~T~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEV-V-TTI-PTIGFNVETVEYKNLKFTMWDVGGQDK-------LRPLWRHYYQNTNG 87 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-c-ccC-CccccceEEEEECCEEEEEEECCCCHh-------HHHHHHHHhcCCCE
Confidence 3799999999999999999975422 2 222 233444456677778999999999854 34445567899999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-cC--CCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-VQ--GVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-~~--~~~ii~vS 389 (423)
+++|+|+++. ..+......+.++.. ...+.+.|.+||+||.|+... .++...+... .. ...++.+|
T Consensus 88 iI~v~D~t~~-------~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 88 LIFVVDSNDR-------ERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred EEEEEeCCCH-------HHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 9999999862 344444443333321 112456899999999998653 2222222110 11 12456899
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|++|.|+++++++|.+.+.+
T Consensus 160 a~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 145
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=5.3e-17 Score=146.14 Aligned_cols=155 Identities=19% Similarity=0.131 Sum_probs=107.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceec-ceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLR-PNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~-~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+++|.+|+|||||++++.+....+..|..|+-. .....+.+++ ..+.+||++|.... ......++..
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-------~~~~~~~~~~ 77 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA-------ILLNDAELAA 77 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc-------cccchhhhhc
Confidence 479999999999999999999865443555554432 2334566666 56889999997652 1223345789
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~v 388 (423)
||++++|+|+++. .++..+..+...+. ...+.|.++|+||+|+..... ..+.+.+.+....++++
T Consensus 78 ~d~~llv~d~~~~-------~s~~~~~~~~~~~~----~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T cd01892 78 CDVACLVYDSSDP-------KSFSYCAEVYKKYF----MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF 146 (169)
T ss_pred CCEEEEEEeCCCH-------HHHHHHHHHHHHhc----cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence 9999999999862 34444444444331 123689999999999964321 23445555432346999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||+++.|++++++.|.+.+.
T Consensus 147 Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 147 SSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EeccCccHHHHHHHHHHHhh
Confidence 99999999999999988754
No 146
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=9.6e-17 Score=143.61 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=104.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe--CCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF--DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~--~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||++++.+.... ..++.+ .....-...+ ....+.+|||||... ....+...+..+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQ-------DRANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeecCCeEEEEEEeCCCchh-------hhHHHhhhcccCC
Confidence 6899999999999999999876432 234432 2222222233 236889999999754 2223455678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHH------HHHHHHHHcCC-CcEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------VYEELERRVQG-VPIY 386 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~------~~~~l~~~~~~-~~ii 386 (423)
++++|+|++++ .++..+. .|...+..+. .+.|.++|+||+|+..... ....+.+.+.. .+++
T Consensus 73 ~~ilv~d~~~~-------~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01893 73 VICLVYSVDRP-------STLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCV 142 (166)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEE
Confidence 99999999862 4555543 3545554432 2789999999999975432 12233333332 3799
Q ss_pred EEecccCcCHHHHHHHHHHHhc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
++||+++.|++++++.+.+.+-
T Consensus 143 e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EeccccccCHHHHHHHHHHHhc
Confidence 9999999999999999887653
No 147
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=5e-17 Score=147.60 Aligned_cols=147 Identities=18% Similarity=0.255 Sum_probs=96.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCC--CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc------ccchHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN------RGLGHAF 306 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~--~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~------~~l~~~f 306 (423)
.++|+++|.+|+|||||+|+|++.. ..+...+++|.++....+ + ..+.++||||+....... ..+...|
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 4589999999999999999999874 345667777766554332 3 379999999986432111 0111233
Q ss_pred HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcC--
Q 014494 307 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQ-- 381 (423)
Q Consensus 307 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~-- 381 (423)
++....++++++|+|++... . .....+...+.. ...|.++|+||+|+....+ ..+.+++.+.
T Consensus 95 l~~~~~~~~ii~vvd~~~~~-------~-~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~ 161 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPL-------K-ELDLEMLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD 161 (179)
T ss_pred HHhChhhcEEEEEecCCCCC-------C-HHHHHHHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence 33334568999999987631 1 122223333322 3689999999999976432 3444444442
Q ss_pred --CCcEEEEecccCcCHH
Q 014494 382 --GVPIYPVCAVLEEGVP 397 (423)
Q Consensus 382 --~~~ii~vSA~~g~gi~ 397 (423)
..+++++||++|+|++
T Consensus 162 ~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCceEEEECCCCCCCC
Confidence 3489999999999974
No 148
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1.1e-16 Score=146.66 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=106.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC--CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc------cccchHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE------NRGLGHA 305 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~--~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~------~~~l~~~ 305 (423)
..++|+++|.+|||||||+++|++.+ ..+...+++|..+.... + +..+.++||||+...... ...+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45689999999999999999999864 34556666665544322 2 368999999997542111 0112223
Q ss_pred HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcC-
Q 014494 306 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQ- 381 (423)
Q Consensus 306 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~- 381 (423)
++.....++++++|+|.+... .... ..+...+.. ...|.++|+||+|+....+ ..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~-------~~~~-~~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~ 166 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPL-------KELD-LQMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF 166 (196)
T ss_pred HHHhCccceEEEEEEecCCCC-------CHHH-HHHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh
Confidence 344444557888899987531 1111 122222321 3689999999999976432 2333444442
Q ss_pred -CCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 382 -GVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 382 -~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
..+++++||++++|++++++.|.+++.+
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999999999999988764
No 149
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.73 E-value=8.4e-17 Score=144.40 Aligned_cols=151 Identities=26% Similarity=0.284 Sum_probs=102.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|++|||||||+++|++..... ...|.......+.+.+..+.++|+||... +...+..+++.+++
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 84 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYFENTDC 84 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHhcCCCE
Confidence 479999999999999999999863321 11222233346777788999999999754 33445567788999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-------CCCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~-------~~~~ii~v 388 (423)
+++|+|+++. ..+......+..+.... .....|.++++||+|+..... .+.+.+.+ ...+++++
T Consensus 85 ii~v~D~~~~-------~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 85 LIYVIDSADK-------KRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred EEEEEeCCCH-------HHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEEe
Confidence 9999999862 23333333333332211 124689999999999875422 11222222 11247899
Q ss_pred ecccCcCHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRM 405 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~ 405 (423)
||++++|+++++++|.+
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=1.3e-16 Score=146.66 Aligned_cols=144 Identities=23% Similarity=0.287 Sum_probs=98.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC-CCCCC---------------cccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK-PAVGH---------------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~---------------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
..|+++|.+|+|||||+++|++.. ..... ...+|.......+...+..+.++||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~----- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD----- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-----
Confidence 489999999999999999998631 11111 133455555566777778999999999865
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHH
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELE 377 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~ 377 (423)
+......++..+|++++|+|+++. +......++..+.. ...|.++|+||+|+... ....+.+.
T Consensus 78 --~~~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 78 --FGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 444556778899999999999862 22333333333322 26899999999999643 22333333
Q ss_pred HHc---------CCCcEEEEecccCcCHHHH
Q 014494 378 RRV---------QGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 378 ~~~---------~~~~ii~vSA~~g~gi~eL 399 (423)
+.+ .+.+++++||++|.|+.++
T Consensus 143 ~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 143 DLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHhCCccccCccCEEEeehhcccccccc
Confidence 332 1568999999999777443
No 151
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.73 E-value=1.2e-16 Score=143.73 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=104.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|||||||++++.+... ...|..|........+.+++ ..+.+|||||...... .....+..+|
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d 74 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDTD 74 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh-------ccccccCCCC
Confidence 799999999999999999998543 23344444444445566665 4678999999854211 1113457899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----------------HHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----------------~~~l~ 377 (423)
++++|+|+++ ..++..+. .+..++..+ ..+.|.++|+||+|+...... .+.+.
T Consensus 75 ~~i~v~~~~~-------~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 75 VILMCFSIDS-------PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 9999999986 24455543 344455433 247899999999998653221 12222
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
..+...+++++||+++.|+++++++|.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 22333579999999999999999998764
No 152
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.73 E-value=1.6e-16 Score=143.85 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=104.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+.++.... ....|..|..+...-.+.+++ ..+.+|||||.... ......++..+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~d 74 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------DRLRPLSYPQTD 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhh-------hhhhhhhcCCCC
Confidence 68999999999999999998743 233444333322222344554 57889999997542 222234567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----------------HHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----------------~~~~l~ 377 (423)
++|+|+|+++ +.++..+. .|...+.... .+.|.|+|+||+|+..... ....+.
T Consensus 75 ~~ilv~d~~~-------~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 75 VFLICFSLVS-------PASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 35666654 3555554432 3689999999999964321 122334
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
+.+...+++++||++|+|++++++.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 44433578999999999999999988753
No 153
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.73 E-value=1.7e-16 Score=145.74 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=107.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|..|+|||||+.++..... ...|..|.-+.....+.+++ ..+.+|||+|..+. ...+..++..+|
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~l~~~~~~~a~ 76 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-------DRLRTLSYPQTN 76 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh-------hhhhhhhccCCC
Confidence 799999999999999999987532 23333332222222344555 67889999998652 222334678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----------------HHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------------VYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----------------~~~~l~ 377 (423)
++++|+|+++ ..+++.+. .|..++.... .+.|+|||+||+|+..... ..+.+.
T Consensus 77 ~~ilvydit~-------~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 77 VFIICFSIAS-------PSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 35677765 4555554432 4789999999999964321 112233
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+.....+++.+||+++.|+++++..+.+.+..
T Consensus 147 ~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 147 KQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 33333579999999999999999999877643
No 154
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.73 E-value=2.1e-16 Score=148.47 Aligned_cols=153 Identities=20% Similarity=0.135 Sum_probs=106.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|++||.+|+|||||++++...+.. . + .+|.........+....+.+|||||.... ......++..++++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~-~-~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~-------~~l~~~~~~~ad~~ 71 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK-D-T-VSTVGGAFYLKQWGPYNISIWDTAGREQF-------HGLGSMYCRGAAAV 71 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-C-C-CCccceEEEEEEeeEEEEEEEeCCCcccc-------hhhHHHHhccCCEE
Confidence 6899999999999999999876542 1 2 22333333333344577999999998652 22233457889999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC-------------------h----HHHH
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-------------------A----EEVY 373 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~-------------------~----~~~~ 373 (423)
|+|+|+++ ..++..+..++..+... ...+.|+|||+||+|+.. . .+..
T Consensus 72 IlV~Dvt~-------~~Sf~~l~~~~~~l~~~--~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 72 ILTYDVSN-------VQSLEELEDRFLGLTDT--ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred EEEEECCC-------HHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 99999997 35677776666555432 224689999999999865 1 1222
Q ss_pred HHHHHHcC-------------CCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 374 EELERRVQ-------------GVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 374 ~~l~~~~~-------------~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
..+.+... ..+++++||++|.||++++..+.+.+.
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 33333322 257999999999999999998886654
No 155
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=1.6e-16 Score=144.51 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=108.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++.+... ...|..|........+.+++ ..+.+|||+|...... ....++..|+
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~~~a~ 74 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-------VRPLCYPDSD 74 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh-------cchhhcCCCC
Confidence 689999999999999999987643 33444443233333455555 6788999999754221 1224578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------------HHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------------~~~~~~l~ 377 (423)
++++|+|+++ +.+++.+ ..|..++..+.+ +.|.|+|+||+|+... .+..+.+.
T Consensus 75 ~~ilvfdit~-------~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 75 AVLICFDISR-------PETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred EEEEEEECCC-------hhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999987 4667774 677777776543 6899999999998531 12234445
Q ss_pred HHcCCCcEEEEecccCcC-HHHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEG-VPELKVGLRML 406 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~g-i~eL~~~i~~~ 406 (423)
+.+...+++.+||+++++ +++++..+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 444323789999999995 99999988774
No 156
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.73 E-value=2e-16 Score=144.48 Aligned_cols=152 Identities=14% Similarity=0.159 Sum_probs=109.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.++|.+++|||||++++..... ...|..|........+.+++ ..+.+|||+|..+. ......++..+|
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~-------~~~~~~~~~~ad 78 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------DNVRPLSYPDSD 78 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh-------HhhhhhhcCCCC
Confidence 799999999999999999987532 33444443333333455555 57899999998552 222234678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------------HHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------------~~~~~~l~ 377 (423)
++++|+|+++ +.++..+ ..|..++..+.+ ..|.|+|+||+|+... .+..+.++
T Consensus 79 ~~ilvyDit~-------~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 79 AVLICFDISR-------PETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999987 3677775 677777766543 6899999999998531 12234455
Q ss_pred HHcCCCcEEEEecccCcC-HHHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEG-VPELKVGLRML 406 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~g-i~eL~~~i~~~ 406 (423)
+.+...+++++||+++.| +++++..+.+.
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 544334799999999998 99999988764
No 157
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.72 E-value=1.4e-16 Score=149.98 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=107.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCccccee-cceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh-c
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL-RPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE-R 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl-~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~-~ 312 (423)
+|+++|.+|+|||||++++.........|..+.- +.....+.+++ ..+.+|||||... .+... .+. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~~---~~~~~ 72 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTEDS---CMQYQ 72 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHhH---HhhcC
Confidence 6899999999999999999765443233333221 33334455544 6789999999862 11112 233 7
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
+|++++|+|+++ ..++.....++.++..+. ...+.|.|+|+||+|+.... +....+...+ +.+++++
T Consensus 73 ad~iilV~d~td-------~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~ 143 (221)
T cd04148 73 GDAFVVVYSVTD-------RSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQEGRACAVVF-DCKFIET 143 (221)
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHHHHHHHHHc-CCeEEEe
Confidence 999999999987 356666667776665542 23478999999999986542 1123344433 4689999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||+++.|+++++++|...+.
T Consensus 144 SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 158
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=2.9e-16 Score=148.58 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=108.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|++||.+|+|||||++++..... ...|..|........+.+++ ..+.||||+|... +......++..|+
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-------~~~~~~~~~~~ad 86 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPY-------YDNVRPLCYSDSD 86 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchh-------hHHHHHHHcCCCc
Confidence 789999999999999999987532 33344333222233345555 6789999999754 2222335678999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHH-HHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------------HHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------------~~~~~~l~ 377 (423)
++++|+|+++ ..++.. ...|..++..+.+ ..|+|+|+||+|+... .+..+.+.
T Consensus 87 ~vIlVyDit~-------~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a 156 (232)
T cd04174 87 AVLLCFDISR-------PETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALA 156 (232)
T ss_pred EEEEEEECCC-------hHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHH
Confidence 9999999997 356665 3667777765533 6799999999998531 12234455
Q ss_pred HHcCCC-cEEEEecccCc-CHHHHHHHHHHHhcc
Q 014494 378 RRVQGV-PIYPVCAVLEE-GVPELKVGLRMLVNG 409 (423)
Q Consensus 378 ~~~~~~-~ii~vSA~~g~-gi~eL~~~i~~~l~~ 409 (423)
+.+ +. .++++||++++ |+++++..+...+.+
T Consensus 157 ~~~-~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 157 KQL-GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HHc-CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 444 44 58999999998 899999998776543
No 159
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.72 E-value=2.1e-16 Score=141.97 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=103.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|+|||||++++.+... ...+..++.+.....+.+++ ..+.+|||||....... ....+..++
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~~ 73 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-------RPLSYPMTD 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc-------ccccCCCCC
Confidence 689999999999999999987643 23344443333334555665 45779999997652221 112457889
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----------------HHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----------------~~~l~ 377 (423)
++++|+|+++ ..++..+. .+...+... ..+.|.++|+||+|+...... ...+.
T Consensus 74 ~~ilv~~~~~-------~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 74 VFLICFSVVN-------PASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 9999999987 24555553 344555433 347999999999998643211 12233
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+.+...+++.|||+++.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 333334689999999999999999887643
No 160
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=1.7e-16 Score=147.39 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=100.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC--CCC-cccceecceEEEEEeC---------------------------C-----
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA--VGH-YSFTTLRPNLGNMNFD---------------------------D----- 281 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~--i~~-~~ftTl~~~~g~v~~~---------------------------~----- 281 (423)
.||++|++++|||||+.+|++.... ... ....|+......+.+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6899999999999999999876211 000 0011111111111111 2
Q ss_pred -eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 282 -IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 282 -~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
..+.|+||||... +...++..+..+|++++|+|++.+. +..+....+..+..+ ...|.|+|
T Consensus 82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t~~~l~~~~~~----~~~~iiiv 143 (203)
T cd01888 82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPC-------PQPQTSEHLAALEIM----GLKHIIIV 143 (203)
T ss_pred ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCC-------CCcchHHHHHHHHHc----CCCcEEEE
Confidence 6789999999643 5666777888899999999998621 111111122222211 13578999
Q ss_pred EeCCCcCChHH---HHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 361 ANKIDEDGAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 361 lNKiDl~~~~~---~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+||+|+..... .++.+++.+ ...+++++||++++|+++|++.|.+.+++
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 144 QNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 99999986432 234454443 24679999999999999999999987765
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=1.1e-16 Score=142.73 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=96.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|+|||||+|+|++.... ....+.+.+... .++||||+..... .+...+...+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~---------~~~~~~v~~~~~--~~iDtpG~~~~~~---~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL---------ARKTQAVEFNDK--GDIDTPGEYFSHP---RWYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc---------CccceEEEECCC--CcccCCccccCCH---HHHHHHHHHHhcCCEE
Confidence 6999999999999999999986321 122334444433 2699999864221 1333445567899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHcCCCcEEEEecccCc
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRVQGVPIYPVCAVLEE 394 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~~~~~ii~vSA~~g~ 394 (423)
++|+|++.... . ...++.. + ...+|.++++||+|+...+ ...+.+.+.....+++++||++++
T Consensus 69 l~v~d~~~~~s-------~--~~~~~~~---~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 69 IYVHGANDPES-------R--LPAGLLD---I---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred EEEEeCCCccc-------c--cCHHHHh---c---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 99999986311 1 1111111 1 1267999999999986532 222223332223589999999999
Q ss_pred CHHHHHHHHHHHhccc
Q 014494 395 GVPELKVGLRMLVNGE 410 (423)
Q Consensus 395 gi~eL~~~i~~~l~~~ 410 (423)
|+++|++.+.+.+.+.
T Consensus 134 gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 134 SVQQLVDYLASLTKQE 149 (158)
T ss_pred CHHHHHHHHHHhchhh
Confidence 9999999999888544
No 162
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.72 E-value=1.8e-16 Score=141.48 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=99.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++...... +..+..+.....+..++ ..+.+|||||+.+... .....++.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-------~~~~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-------LRPLSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-------cchhhcCCCC
Confidence 689999999999999999998754222 22222222223334443 5789999999875321 1122347899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH---------------HHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---------------YEELER 378 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~---------------~~~l~~ 378 (423)
++++|+|+++. .++... ..+...+..+. .+.|+++|+||+|+...... ...+..
T Consensus 74 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 74 VFLICFSVDSP-------SSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 99999999862 333332 23444444332 37999999999998755422 112222
Q ss_pred HcCCCcEEEEecccCcCHHHHHHHHHH
Q 014494 379 RVQGVPIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 379 ~~~~~~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
.+...+++++||++++|++++++.|.+
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 333338999999999999999998865
No 163
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=7.4e-17 Score=135.97 Aligned_cols=113 Identities=28% Similarity=0.532 Sum_probs=90.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc--cchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR--GLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~--~l~~~fl~~i~~a 313 (423)
+|+|+|.+|||||||+|+|++.+ ..+++++++|..+..+.+.+++..+.++||||+.+...... .....+++.+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999964 36789999999998888889999999999999987654432 1344678888999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
|++++|+|++. ........++.+|. ..+|.++|+||
T Consensus 81 d~ii~vv~~~~--------~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASN--------PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTS--------HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CEEEEEEECCC--------CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 99999999664 12244556666662 37999999998
No 164
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.9e-16 Score=141.69 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=126.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+|.+||.+|+|||+|+-+++.............++.....+.+++ ..+.+|||.|+.+ +...+-++++.
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti~~sYyrg 84 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTITTAYYRG 84 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHHHHHHHhh
Confidence 34799999999999999999997644433332334566677788887 5789999999987 56667889999
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
|+.+++|+|+++ ..+++....|+..+..+++. ..|.++|.||+|+.... +.-+.|+..+ +..++++
T Consensus 85 A~gi~LvyDitn-------e~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~F~Et 154 (207)
T KOG0078|consen 85 AMGILLVYDITN-------EKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVSKERGEALAREY-GIKFFET 154 (207)
T ss_pred cCeeEEEEEccc-------hHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccccccHHHHHHHHHHh-CCeEEEc
Confidence 999999999998 47788888899998887664 78999999999998743 4456677666 8899999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||+++.||++.+-.|.+.+.
T Consensus 155 SAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred cccCCCCHHHHHHHHHHHHH
Confidence 99999999998877776655
No 165
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.71 E-value=2.8e-16 Score=141.56 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=104.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.++|.+|+|||||++++.+.. ....|+.|+.+.....+.+++ ..+.+|||||..+... .....+..+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK-------LRPLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc-------ccccccCCCc
Confidence 58999999999999999998743 344566665544444556665 5778999999855222 1223567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------------HHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------------~~~~~l~ 377 (423)
++++|+|+++. .++.... .|+..+... ..+.|.++|+||+|+.... +....+.
T Consensus 74 ~~i~v~d~~~~-------~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 74 VFLLCFSVVNP-------SSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 99999999872 4455443 455555432 2368999999999986432 1122333
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHH
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLR 404 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~ 404 (423)
+......++++||+++.|++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 333334899999999999999998765
No 166
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.71 E-value=5.6e-16 Score=138.15 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||++++..... ...++. +.......+.+++ ..+.+|||+|... ..++..+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~------------~~~~~~~~ 67 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY-VQLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD------------AQFASWVD 67 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCCCC-CccceEEEEEECCEEEEEEEEECCCCCc------------hhHHhcCC
Confidence 589999999999999998765432 222322 2222334566776 5688999999843 12456799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC--hH----HHHHHHHHHcCCCcEEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG--AE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~--~~----~~~~~l~~~~~~~~ii~v 388 (423)
++++|+|+++ +.++.....++.++..+. ...+.|+++|.||+|+.. .. +..+.+.+......+++|
T Consensus 68 ~~ilv~d~~~-------~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 68 AVIFVFSLEN-------EASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEE
Confidence 9999999998 477888777887776553 234679999999999842 11 222344444345789999
Q ss_pred ecccCcCHHHHHHHHHHH
Q 014494 389 CAVLEEGVPELKVGLRML 406 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~ 406 (423)
||+++.||++++..+.+.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999988754
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.71 E-value=4.2e-16 Score=139.57 Aligned_cols=149 Identities=24% Similarity=0.230 Sum_probs=101.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeE
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 317 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll 317 (423)
|+++|.+|||||||++++.+.... ..+..| .......+...+..+.+|||||... +...+..+++.+|+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~ii 72 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESVVPT-TGFNSVAIPTQDAIMELLEIGGSQN-------LRKYWKRYLSGSQGLI 72 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-cccccc-CCcceEEEeeCCeEEEEEECCCCcc-------hhHHHHHHHhhCCEEE
Confidence 689999999999999999976432 223222 2222334555668899999999754 4445567889999999
Q ss_pred EEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHH--HHHHc--CCCcEEEEec
Q 014494 318 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEE--LERRV--QGVPIYPVCA 390 (423)
Q Consensus 318 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~--l~~~~--~~~~ii~vSA 390 (423)
+|+|+++. ..+...+.++.++.. ...+.|+++|+||+|+..... +.+. +.... .+..++.+||
T Consensus 73 ~V~D~t~~-------~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa 142 (164)
T cd04162 73 FVVDSADS-------ERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSL 142 (164)
T ss_pred EEEECCCH-------HHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeee
Confidence 99999872 334444444444432 124799999999999875432 1111 11111 2466788999
Q ss_pred cc------CcCHHHHHHHHHH
Q 014494 391 VL------EEGVPELKVGLRM 405 (423)
Q Consensus 391 ~~------g~gi~eL~~~i~~ 405 (423)
++ ++|++++++.+..
T Consensus 143 ~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 143 DDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred cCCCChhHHHHHHHHHHHHhc
Confidence 88 9999999987753
No 168
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.70 E-value=6.9e-16 Score=141.12 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=105.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|++|+|||||+++|...... ..+..++.......+.+++ ..+.+|||+|...... +. ..++..++
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~---~~~~~~a~ 74 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER----LR---PLSYSKAH 74 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECCEEEEEEEEECCCChhccc----cc---hhhcCCCC
Confidence 7899999999999999999854322 2232333333344555555 4578999999865221 11 12457889
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChH--------------HHHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE--------------EVYEELERR 379 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--------------~~~~~l~~~ 379 (423)
++++++|+++ ..++..+. .|...+.... .+.|.|+|+||+|+.... +....+.+.
T Consensus 75 ~~llv~~i~~-------~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 75 VILIGFAVDT-------PDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 9999999976 24555554 3555554432 369999999999985311 123334444
Q ss_pred cCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 380 VQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 380 ~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+...+++.+||+++.|++++++.+.+.+-..
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 4335799999999999999999998665433
No 169
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.70 E-value=2.8e-16 Score=142.53 Aligned_cols=153 Identities=23% Similarity=0.341 Sum_probs=109.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|.++|+.|||||||++.|...... . ...|.......+.+.+..+.+||++|... +...|..++..++.+
T Consensus 16 ~ililGl~~sGKTtll~~l~~~~~~--~-~~pT~g~~~~~i~~~~~~~~~~d~gG~~~-------~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 16 KILILGLDGSGKTTLLNRLKNGEIS--E-TIPTIGFNIEEIKYKGYSLTIWDLGGQES-------FRPLWKSYFQNADGI 85 (175)
T ss_dssp EEEEEESTTSSHHHHHHHHHSSSEE--E-EEEESSEEEEEEEETTEEEEEEEESSSGG-------GGGGGGGGHTTESEE
T ss_pred EEEEECCCccchHHHHHHhhhcccc--c-cCcccccccceeeeCcEEEEEEecccccc-------ccccceeecccccee
Confidence 7999999999999999999864211 1 23355566777888899999999999754 333455677899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHH-HHc---CCCcEEEEe
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELE-RRV---QGVPIYPVC 389 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~-~~~---~~~~ii~vS 389 (423)
+||+|.++. ..+......+.++.. .+.+...|.+|++||.|+... .++.+.+. ..+ ....++.+|
T Consensus 86 IfVvDssd~-------~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 86 IFVVDSSDP-------ERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp EEEEETTGG-------GGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred EEEEecccc-------eeecccccchhhhcc-hhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 999999973 334444444444432 235568999999999998764 22222221 111 245689999
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|.+|+|+.+.++||.+.+
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999998753
No 170
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.69 E-value=6.2e-16 Score=136.57 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=99.8
Q ss_pred eEEEECCCCCcHHHHHHHHHc--CCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc------ccccchHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISR--AKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH------ENRGLGHAFLR 308 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg--~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~------~~~~l~~~fl~ 308 (423)
+|+++|.+|||||||++.|++ ..+.....+++|..... +..+ ..+.++||||+..... ....+...++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999993 34445556655544332 2222 3899999999865311 11112233444
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHH----HcC
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELER----RVQ 381 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~----~~~ 381 (423)
..+.++.+++++|..... ......+...+.. ...|.++|+||+|+....+ ....+.. ...
T Consensus 78 ~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~ 144 (170)
T cd01876 78 NRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEI 144 (170)
T ss_pred hChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccC
Confidence 445567889999987521 1111223333332 2589999999999965432 1222222 234
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
..+++++||+++.|++++++.|.+++
T Consensus 145 ~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 145 DPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCceEEEecCCCCCHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 171
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.69 E-value=5.8e-16 Score=143.51 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=105.9
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccce-ecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccceeE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 317 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftT-l~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll 317 (423)
||.+|||||||++++..... ...|..|. .+.....+.+++ ..+.+|||+|..+ +......++..+++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-------~~~l~~~~~~~ad~~i 72 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-------FGGLRDGYYIQGQCAI 72 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhHHHhcCCCEEE
Confidence 69999999999999986433 22333221 222223344444 6889999999865 2233345788999999
Q ss_pred EEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecccCc
Q 014494 318 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLEE 394 (423)
Q Consensus 318 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~~g~ 394 (423)
+|+|+++ ..++..+..|+.++..+. .+.|+|+|+||+|+.... +.. .+.+. .+..++++||++++
T Consensus 73 lV~D~t~-------~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-~~~~~~e~SAk~~~ 140 (200)
T smart00176 73 IMFDVTA-------RVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRK-KNLQYYDISAKSNY 140 (200)
T ss_pred EEEECCC-------hHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHH-cCCEEEEEeCCCCC
Confidence 9999997 356777777888776653 378999999999985421 111 23232 35789999999999
Q ss_pred CHHHHHHHHHHHhcc
Q 014494 395 GVPELKVGLRMLVNG 409 (423)
Q Consensus 395 gi~eL~~~i~~~l~~ 409 (423)
||++++.+|...+.+
T Consensus 141 ~v~~~F~~l~~~i~~ 155 (200)
T smart00176 141 NFEKPFLWLARKLIG 155 (200)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999977654
No 172
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.69 E-value=1.2e-15 Score=143.63 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=105.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|++||.+|+|||||+++++.... ...|..|........+.+++ ..+.+|||+|... +......++..+|
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-------~~~l~~~~~~~~d 74 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSY-------YDNVRPLAYPDSD 74 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCcHH-------HHHHhHHhccCCC
Confidence 689999999999999999997533 33455444333334455655 6788999999854 2222234578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------------HHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------------~~~~~l~ 377 (423)
++++|+|+++ ..+++.+. .|..++..+. .+.|+|||+||+|+.... +....+.
T Consensus 75 ~illvfdis~-------~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 75 AVLICFDISR-------PETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 9999999997 35566653 3444443332 478999999999996421 1223344
Q ss_pred HHcCCCcEEEEecccCcC-HHHHHHHHHHHh
Q 014494 378 RRVQGVPIYPVCAVLEEG-VPELKVGLRMLV 407 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~g-i~eL~~~i~~~l 407 (423)
+.+...+++++||+++++ |++++..+....
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 444335899999999885 999998877643
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=2.8e-16 Score=146.42 Aligned_cols=145 Identities=20% Similarity=0.225 Sum_probs=97.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC-------------------------------CcccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG-------------------------------HYSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~-------------------------------~~~ftTl~~~~g~v~~~~~~i~ 285 (423)
+|++||++|||||||+++|+...-.+. ....+|+++....+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999975422211 1146788888888888889999
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
++||||+.+ +.......+..+|++++|+|++.. ...+.......+.. +...+.|+|+||+|
T Consensus 81 liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~----~~~~~iIvviNK~D 141 (208)
T cd04166 81 IADTPGHEQ-------YTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSL----LGIRHVVVAVNKMD 141 (208)
T ss_pred EEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHH----cCCCcEEEEEEchh
Confidence 999999854 334455677899999999999863 11222222222221 11245677899999
Q ss_pred cCCh-H----HHHHHHHH---Hc--CCCcEEEEecccCcCHHHHH
Q 014494 366 EDGA-E----EVYEELER---RV--QGVPIYPVCAVLEEGVPELK 400 (423)
Q Consensus 366 l~~~-~----~~~~~l~~---~~--~~~~ii~vSA~~g~gi~eL~ 400 (423)
+... . .+...+++ .+ +..++++|||+++.|+++..
T Consensus 142 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 142 LVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 9742 1 12233332 22 23569999999999998644
No 174
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.1e-16 Score=139.20 Aligned_cols=159 Identities=17% Similarity=0.154 Sum_probs=113.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.|+|..|+|||||+-++...+......+...-...+..+.+++ .+|.||||.|+.+..+. .. -+++.|+
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl----ap---MYyRgA~ 79 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL----AP---MYYRGAN 79 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccc----cc---ceecCCc
Confidence 789999999999999998876533221111111122234455555 68889999999884442 22 3578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~vSA 390 (423)
++|+|+|+++ .+++...+.|..+|..-.+ .+.-+.+|.||+|+....+ ..+.+.+. .+..++.+||
T Consensus 80 AAivvYDit~-------~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~-~gll~~ETSA 149 (200)
T KOG0092|consen 80 AAIVVYDITD-------EESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAES-QGLLFFETSA 149 (200)
T ss_pred EEEEEEeccc-------HHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHh-cCCEEEEEec
Confidence 9999999998 5889999999999976432 1222334569999987432 22333333 4778999999
Q ss_pred ccCcCHHHHHHHHHHHhccccC
Q 014494 391 VLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+++.|+++|+..|.+.+.....
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred ccccCHHHHHHHHHHhccCccc
Confidence 9999999999999999876543
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.69 E-value=4.5e-16 Score=165.79 Aligned_cols=149 Identities=28% Similarity=0.464 Sum_probs=111.3
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHHHhccceeEEE
Q 014494 242 GMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 242 G~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~i~~ad~ll~V 319 (423)
|.||+|||||+|+|++.+..+++++++|.+...+.+.+++..+.++||||+.+..... ......++. .+.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEEE
Confidence 8999999999999999988899999999999999999998899999999997643221 111122211 2468999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecccCcCH
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLEEGV 396 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~~g~gi 396 (423)
+|+++. + .. ..+..++.. .+.|.++|+||+|+.... ...+.+.+.+ +.+++++||++++|+
T Consensus 80 vDat~l-------e--r~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l-g~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 80 VDASNL-------E--RN-LYLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERL-GVPVVPTSATEGRGI 143 (591)
T ss_pred ecCCcc-------h--hh-HHHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-CCCEEEEECCCCCCH
Confidence 999862 1 11 122223322 278999999999986432 2345566655 578999999999999
Q ss_pred HHHHHHHHHHh
Q 014494 397 PELKVGLRMLV 407 (423)
Q Consensus 397 ~eL~~~i~~~l 407 (423)
+++++.+.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 176
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=137.28 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=110.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC--CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH----H
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF----L 307 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~--~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f----l 307 (423)
..+-|+++|.+|+|||||||+|++.+ ..++..|+.|..++.-.+ + ..+.++|.||+.- |.-.......| .
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~-~~~~lVDlPGYGy-Akv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--D-DELRLVDLPGYGY-AKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--c-CcEEEEeCCCccc-ccCCHHHHHHHHHHHH
Confidence 45689999999999999999999987 678999999976655444 3 2488999999853 22111222222 2
Q ss_pred HHH---hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH---HHHHHHHc-
Q 014494 308 RHI---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEELERRV- 380 (423)
Q Consensus 308 ~~i---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~---~~~l~~~~- 380 (423)
.++ ..-..+++++|+.+.. ...-+.+...+..+ ..|.++|+||+|.....+. +..+++.+
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~--------~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPP--------KDLDREMIEFLLEL-----GIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHhhchhheEEEEEEECCCCC--------cHHHHHHHHHHHHc-----CCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 233 3346778899998742 22223444444332 7999999999999886443 34555433
Q ss_pred --CCCc--EEEEecccCcCHHHHHHHHHHHhcc
Q 014494 381 --QGVP--IYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 381 --~~~~--ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+... ++.+|+.++.|+++|...|.+.+..
T Consensus 166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 2222 8999999999999999999887754
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.69 E-value=7.2e-16 Score=164.02 Aligned_cols=155 Identities=22% Similarity=0.258 Sum_probs=112.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.|+++|++|+|||||+++|++.... ....++.|.+.....+.+++..+.++||||+.. +...+...+..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~-------f~~~~~~g~~~a 74 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK-------FISNAIAGGGGI 74 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------HHHHHHhhhccC
Confidence 6899999999999999999985321 122456677777777888888999999999754 555667778889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHH---HHHHHHHHc------CCC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEE---VYEELERRV------QGV 383 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~---~~~~l~~~~------~~~ 383 (423)
|++++|+|+++.. ..+....+..+.. .+.| .|+|+||+|+.+.+. ..+.+++.+ .+.
T Consensus 75 D~aILVVDa~~G~--------~~qT~ehl~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~ 141 (581)
T TIGR00475 75 DAALLVVDADEGV--------MTQTGEHLAVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNA 141 (581)
T ss_pred CEEEEEEECCCCC--------cHHHHHHHHHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999998731 1222222222221 2567 999999999987542 222333321 257
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++++||++|+|++++++.|..+++...
T Consensus 142 ~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 142 KIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred cEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 8999999999999999999988887654
No 178
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.68 E-value=7e-17 Score=149.94 Aligned_cols=169 Identities=29% Similarity=0.430 Sum_probs=129.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
++|++||+|.+|||||+.-|++....++.|.|||+....|.+.+.+-.+.+.|.||+++++..+++-+.+.+...+.|.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 48999999999999999999999889999999999999999999999999999999999999999999999888899999
Q ss_pred eEEEEecCCCCCCCC----------------------------CC------CcHHHHHHHHHHHHhhh-----------c
Q 014494 316 LAYVVDLASGLDGRK----------------------------GI------KPWKQLRDLIIELEHHQ-----------E 350 (423)
Q Consensus 316 ll~VvD~s~~~~~~~----------------------------~~------~~~~~~~~l~~eL~~~~-----------~ 350 (423)
++.|+|+-.++.... +. ...+....++.+-..++ .
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 999999987532100 00 01112222222221111 0
Q ss_pred c--------cCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 351 G--------LSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 351 ~--------l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+ -.-.|.|.++||+|-..-++. +. .+.....+++||.++.|+++|++.+++.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISiEEL-di---i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISIEEL-DI---IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeeeecc-ce---eeeccceeecccccccchHHHHHHHhhcch
Confidence 0 124689999999998775442 11 223456799999999999999999998875
No 179
>PRK09866 hypothetical protein; Provisional
Probab=99.68 E-value=3.6e-16 Score=162.71 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=75.0
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEe
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 362 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlN 362 (423)
+++++||||+....+ ..+.....+.+..+|+|++|+|+.... . .....+.+.+..... +.|.|+|+|
T Consensus 231 QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~-------s-~~DeeIlk~Lkk~~K---~~PVILVVN 297 (741)
T PRK09866 231 QLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLK-------S-ISDEEVREAILAVGQ---SVPLYVLVN 297 (741)
T ss_pred CEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCC-------C-hhHHHHHHHHHhcCC---CCCEEEEEE
Confidence 578999999975322 125555667899999999999987621 1 122334444543211 259999999
Q ss_pred CCCcCC-----hHHHHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHH
Q 014494 363 KIDEDG-----AEEVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 363 KiDl~~-----~~~~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
|+|+.. .+.+.+.+...+ +...||+|||+.|.|++.|++.|..
T Consensus 298 KIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 298 KFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 999875 233344433231 2457999999999999999998876
No 180
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=9.8e-16 Score=141.42 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=96.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC----------------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR 300 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~----------------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~ 300 (423)
.|+++|++++|||||+++|+..... ......+|.+.....+..++..+.++||||+..
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~------ 77 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD------ 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH------
Confidence 6899999999999999999753100 011345666666666666678999999999854
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHHH----HH
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVY----EE 375 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~~----~~ 375 (423)
+.......+..+|++++|+|+... ...+...++..+... ..| .|+|+||+|+....+.. ++
T Consensus 78 -~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~-----~~~~iIvviNK~D~~~~~~~~~~~~~~ 143 (195)
T cd01884 78 -YIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQV-----GVPYIVVFLNKADMVDDEELLELVEME 143 (195)
T ss_pred -HHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHc-----CCCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence 555566778889999999999763 223333444444332 566 67889999997543322 23
Q ss_pred HHHHc-------CCCcEEEEecccCcCH
Q 014494 376 LERRV-------QGVPIYPVCAVLEEGV 396 (423)
Q Consensus 376 l~~~~-------~~~~ii~vSA~~g~gi 396 (423)
+++.+ .+.++++|||++|.|+
T Consensus 144 i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 144 VRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHhcccccCCeEEEeeCccccCC
Confidence 43332 2468999999999875
No 181
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.68 E-value=2.4e-15 Score=133.36 Aligned_cols=153 Identities=20% Similarity=0.310 Sum_probs=114.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccce-ecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftT-l~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+++|||||++++.+.... ..+..|. .+.....+.+++ ..+.+||++|..+ +.......+..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~~~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQER-------FDSLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGG-------GHHHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-ccccccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence 5899999999999999999986433 3344333 455556666666 5689999999754 222223457889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..|+..+..+.+ ...|.++|.||.|+.... +..+.+.+.+. .+++.+|
T Consensus 73 ~~~ii~fd~~~-------~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~S 142 (162)
T PF00071_consen 73 DAIIIVFDVTD-------EESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVS 142 (162)
T ss_dssp SEEEEEEETTB-------HHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEB
T ss_pred ccccccccccc-------ccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEE
Confidence 99999999987 4778888888888876654 357999999999987632 23445555554 8999999
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|+++.|+.+++..+.+.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998887765
No 182
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=5.4e-16 Score=134.81 Aligned_cols=137 Identities=23% Similarity=0.289 Sum_probs=88.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|++||.+|+|||||+++|++.... +. ++ ..+.+.. .++||||..... ..+.......++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~-----~t-~~~~~~~---~~iDt~G~~~~~---~~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YK-----KT-QAVEYND---GAIDTPGEYVEN---RRLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cc-----cc-eeEEEcC---eeecCchhhhhh---HHHHHHHHHHhhcCCEE
Confidence 6899999999999999999986431 11 11 1233332 689999973210 11122223457899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecccC
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
++|+|+++... ... ..+... ...|.|+|+||+|+.... +..+.+.+.....+++++||+++
T Consensus 67 ilv~d~~~~~s-------~~~-~~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 67 ALVQSATDPES-------RFP-PGFASI--------FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDE 130 (142)
T ss_pred EEEecCCCCCc-------CCC-hhHHHh--------ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCC
Confidence 99999987421 111 112111 135999999999986532 22223333332347999999999
Q ss_pred cCHHHHHHHHH
Q 014494 394 EGVPELKVGLR 404 (423)
Q Consensus 394 ~gi~eL~~~i~ 404 (423)
.|+++++++|.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999998773
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.67 E-value=2e-15 Score=163.94 Aligned_cols=154 Identities=27% Similarity=0.299 Sum_probs=112.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
...+.|+|+|+.|+|||||+++|.+.........+.|.+.....+.+++..+.||||||+.. +...+.+.+..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~-------F~~m~~rga~~ 360 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA-------FTAMRARGAQV 360 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCcc-------chhHHHhhhhh
Confidence 46689999999999999999999887665555666776666666777788999999999865 34445566788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHH------c-CCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QGV 383 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~------~-~~~ 383 (423)
+|++++|+|+.+.. ..+....+..+.. .+.|+|+|+||+|+... +.+...+.+. + ...
T Consensus 361 aDiaILVVdAddGv--------~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 361 TDIVVLVVAADDGV--------MPQTIEAINHAKA-----AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred CCEEEEEEECCCCC--------CHhHHHHHHHHHh-----cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence 99999999998631 1222222222221 37899999999999753 3333333321 1 236
Q ss_pred cEEEEecccCcCHHHHHHHHHHH
Q 014494 384 PIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
+++++||++|.|+++|+++|...
T Consensus 428 p~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhhh
Confidence 89999999999999999998754
No 184
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.67 E-value=3.5e-15 Score=129.74 Aligned_cols=154 Identities=24% Similarity=0.261 Sum_probs=114.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|.++|..||||||++++|.+..+. ..-.|+......+.+++.++.+||+.|+.. +...|..|++.+|.+
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~---~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~-------lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDTD---TISPTLGFQIKTLEYKGYTLNIWDVGGQKT-------LRSYWKNYFESTDGL 87 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCcc---ccCCccceeeEEEEecceEEEEEEcCCcch-------hHHHHHHhhhccCeE
Confidence 7899999999999999999987432 112245556677888999999999999865 777788899999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHH--HHHHHHc--CCCcEEEEe
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVY--EELERRV--QGVPIYPVC 389 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~--~~l~~~~--~~~~ii~vS 389 (423)
++|+|.++. ..++.....+.++.. ...++..|.++++||.|+... +++. -.|.+.+ ..++++.||
T Consensus 88 IwvvDssD~-------~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 88 IWVVDSSDR-------MRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred EEEEECchH-------HHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 999999873 344444444444433 456678999999999999843 3322 2233332 367899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|.+|+++.+=++++..-+.
T Consensus 160 ~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred ccccccHHHHHHHHHHHHH
Confidence 9999888887777766554
No 185
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=2.4e-15 Score=159.53 Aligned_cols=152 Identities=26% Similarity=0.297 Sum_probs=108.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-eEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+.|+++|++|+|||||+++|.+........++.|.+.....+.+++. .+.+|||||+.. +...+.+.+..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~-------F~~~r~rga~~ 158 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEA-------FTSMRARGAKV 158 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcc-------hhhHHHhhhcc
Confidence 4469999999999999999999987666566666776665556666554 899999999865 33344566788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHH------c-CCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QGV 383 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~------~-~~~ 383 (423)
+|++++|+|+.+.. ..+....+..+.. .+.|.|+++||+|+... +...+.+.+. + ...
T Consensus 159 aDiaILVVda~dgv--------~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 159 TDIVVLVVAADDGV--------MPQTIEAISHAKA-----ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred CCEEEEEEECCCCC--------CHhHHHHHHHHHH-----cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCc
Confidence 99999999987631 1222222222221 37899999999999642 3333444322 1 135
Q ss_pred cEEEEecccCcCHHHHHHHHHH
Q 014494 384 PIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
+++++||++|+|+++|+++|..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999998864
No 186
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.66 E-value=5.6e-16 Score=154.36 Aligned_cols=88 Identities=36% Similarity=0.585 Sum_probs=83.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCe-----------------eEEEEcCCCCcCCccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIKGAHE 298 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~-----------------~i~l~DtpG~i~~a~~ 298 (423)
.+||||+||+|||||+|+||+..+ .+++|||||..|+.|.+.+++. .+.++|+||++.+++.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~ 83 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASK 83 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhc
Confidence 689999999999999999999999 9999999999999999998772 5899999999999999
Q ss_pred cccchHHHHHHHhccceeEEEEecCC
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLAS 324 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~ 324 (423)
+.+++..|+.+++.||+++||+|+..
T Consensus 84 g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 84 GEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99999999999999999999999975
No 187
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=2.7e-15 Score=138.48 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=101.0
Q ss_pred eEEEECCCCCcHHHHHH-HHHcCCC----CCCCccccee--cceEEE--------EEeCC--eeEEEEcCCCCcCCcccc
Q 014494 237 DVGLVGMPSAGKSTLLG-AISRAKP----AVGHYSFTTL--RPNLGN--------MNFDD--IQITVADIPGLIKGAHEN 299 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn-~Lsg~~~----~i~~~~ftTl--~~~~g~--------v~~~~--~~i~l~DtpG~i~~a~~~ 299 (423)
+|.++|.+|+|||||+. .+.+... ....|..|.- +...-. +.+++ ..+.+|||+|..+.
T Consensus 4 Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---- 79 (195)
T cd01873 4 KCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---- 79 (195)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh----
Confidence 79999999999999995 5654322 1223333321 111111 12344 67899999998541
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCCh---------
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGA--------- 369 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--------- 369 (423)
+. ..++..||++++|+|+++ +.+++.+. .|..++.... .+.|+|+|+||+|+...
T Consensus 80 --~~---~~~~~~ad~iilv~d~t~-------~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 --DR---RFAYGRSDVVLLCFSIAS-------PNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred --hh---cccCCCCCEEEEEEECCC-------hhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhcc
Confidence 11 125688999999999987 36677775 4666665543 36899999999998631
Q ss_pred --------------HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 370 --------------EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 370 --------------~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+..+.+.+.+ +.+++.+||++++|++++++.+.+.
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~-~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKEL-GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHh-CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 12234444444 5689999999999999999988753
No 188
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=159.04 Aligned_cols=162 Identities=25% Similarity=0.405 Sum_probs=123.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH----HHHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH----AFLRH 309 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~----~fl~~ 309 (423)
..+++.|+|+||+|||||+|.++.+.+.+.+|+|||.....|.+.+.-..+.+.||||+....-+.++... ..+.|
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999888889999999999886666554332 23567
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-------HHHHHHHHHcCC
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-------EVYEELERRVQG 382 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-------~~~~~l~~~~~~ 382 (423)
++.| +||+.|+|..+ +....+++ .+...+ .+-+.++|.|+|+||+|+...+ ++++.+.+. .+
T Consensus 247 Lraa--VLYfmDLSe~C----GySva~Qv-kLfhsI---KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~-~~ 315 (620)
T KOG1490|consen 247 LRSA--VLYFMDLSEMC----GYSVAAQV-KLYHSI---KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD-GN 315 (620)
T ss_pred hhhh--heeeeechhhh----CCCHHHHH-HHHHHh---HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc-cC
Confidence 7665 89999999743 33444443 444444 3556799999999999987542 233344433 34
Q ss_pred CcEEEEecccCcCHHHHHHHHHHH
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+++.+|+.+.+|+.++.....+.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHH
Confidence 789999999999998876655443
No 189
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.9e-15 Score=133.11 Aligned_cols=160 Identities=17% Similarity=0.191 Sum_probs=120.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|.++|..++|||||++++.-......-.+...++.....+.+.+ .++.+|||+|+.+ +.-....+++.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER-------FrslipsY~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH-------HhhhhhhhccCC
Confidence 4899999999999999999987644332222333555556666766 6889999999987 444456789999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----HHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----EELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----~~l~~~~~~~~ii~vS 389 (423)
.+++.|+|+++ ..++++..+|++.+..... -.+.-+++|.||.||.+..+.. +...+.+ +..++.+|
T Consensus 96 ~vaviVyDit~-------~~Sfe~t~kWi~dv~~e~g-s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel-~a~f~ets 166 (221)
T KOG0094|consen 96 SVAVIVYDITD-------RNSFENTSKWIEDVRRERG-SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL-NAEFIETS 166 (221)
T ss_pred eEEEEEEeccc-------cchHHHHHHHHHHHHhccC-CCceEEEEEcccccccchhhhhHHHHHHHHHHh-CcEEEEec
Confidence 99999999998 5889999999999876532 1123344555999999875432 2233333 45889999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+.|+||.+|+..|...++...
T Consensus 167 ak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred ccCCCCHHHHHHHHHHhccCcc
Confidence 9999999999999999987664
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=3.3e-15 Score=160.94 Aligned_cols=155 Identities=22% Similarity=0.305 Sum_probs=108.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe----CCeeEEEEcCCCCcCCccccccchHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF----DDIQITVADIPGLIKGAHENRGLGHAFLR 308 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~----~~~~i~l~DtpG~i~~a~~~~~l~~~fl~ 308 (423)
...+.|+|+|++|+|||||+++|.+........+..|.+.....+.+ .+..+.||||||+.. +...+..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHH
Confidence 45679999999999999999999987655544455555444333333 237899999999854 4445556
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHH------c
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V 380 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~------~ 380 (423)
.+..+|++++|+|+.+... .+....+..+.. .+.|+|+|+||+|+... +.+.+.+... +
T Consensus 315 g~~~aDiaILVVDA~dGv~--------~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 315 GANVTDIAILIIAADDGVK--------PQTIEAINYIQA-----ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHCCEEEEEEECcCCCC--------hhhHHHHHHHHh-----cCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 7889999999999876321 111122222221 37899999999999753 2333444322 1
Q ss_pred -CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 381 -QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 381 -~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
...+++++||++|.|+++|++.|..+.
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 236899999999999999999987764
No 191
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.63 E-value=8.8e-15 Score=156.33 Aligned_cols=154 Identities=21% Similarity=0.213 Sum_probs=107.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.|+++|..++|||||+++|++.... .......|.+.....+... +..+.++||||+.+ +.......+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHhhc
Confidence 6899999999999999999985322 2233456665554445443 46789999999854 55556677889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChH---HHHHHHHHHc-----CCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAE---EVYEELERRV-----QGV 383 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~---~~~~~l~~~~-----~~~ 383 (423)
+|++++|+|+... ...+....+..+.. .+.| .|+|+||+|+.+.+ ...+.+++.+ ...
T Consensus 75 ~D~~lLVVda~eg--------~~~qT~ehl~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~ 141 (614)
T PRK10512 75 IDHALLVVACDDG--------VMAQTREHLAILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA 141 (614)
T ss_pred CCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999998863 22232333332322 2456 47899999998643 2234444443 236
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
++|+|||++|+|+++|++.|.++....
T Consensus 142 ~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 899999999999999999998876543
No 192
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.63 E-value=1.2e-14 Score=124.61 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=98.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC--CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeE
Q 014494 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD--DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLA 317 (423)
Q Consensus 240 LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~--~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll 317 (423)
++|++|+|||||+++|++.......+..+........+... +..+.++|+||+.... ......+..++.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------SLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHH-------hHHHHHhcCCCEEE
Confidence 58999999999999999875533333333333333333332 4789999999987622 22245677899999
Q ss_pred EEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHH----HHHHcCCCcEEEEecccC
Q 014494 318 YVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE----LERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 318 ~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~----l~~~~~~~~ii~vSA~~g 393 (423)
+|+|++.. ........+..... ........|.++|+||+|+......... ........+++++|+..+
T Consensus 74 ~v~d~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 145 (157)
T cd00882 74 LVYDVTDR-------ESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTG 145 (157)
T ss_pred EEEECcCH-------HHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 99999872 22333332211111 1123357999999999999765432221 222235678999999999
Q ss_pred cCHHHHHHHHH
Q 014494 394 EGVPELKVGLR 404 (423)
Q Consensus 394 ~gi~eL~~~i~ 404 (423)
.|+++++++|.
T Consensus 146 ~~i~~~~~~l~ 156 (157)
T cd00882 146 ENVEELFEELA 156 (157)
T ss_pred CChHHHHHHHh
Confidence 99999999875
No 193
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.62 E-value=1.5e-14 Score=154.15 Aligned_cols=157 Identities=23% Similarity=0.280 Sum_probs=108.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCC---------CCc------ccceecceEEEEEeC---C--eeEEEEcCCCCcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAV---------GHY------SFTTLRPNLGNMNFD---D--IQITVADIPGLIK 294 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i---------~~~------~ftTl~~~~g~v~~~---~--~~i~l~DtpG~i~ 294 (423)
+.+++|||+.++|||||+++|......+ .++ ...|.....-.+.+. + ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999997642111 111 134444433344442 2 6789999999976
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHH
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 372 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~ 372 (423)
+...+..++..||++++|+|+++.. .......+...+. .+.|.|+|+||+|+... +..
T Consensus 83 -------F~~~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~ 142 (595)
T TIGR01393 83 -------FSYEVSRSLAACEGALLLVDAAQGI-------EAQTLANVYLALE------NDLEIIPVINKIDLPSADPERV 142 (595)
T ss_pred -------HHHHHHHHHHhCCEEEEEecCCCCC-------CHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHH
Confidence 4445667889999999999998731 2223333322221 26799999999999643 334
Q ss_pred HHHHHHHcC--CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 373 YEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 373 ~~~l~~~~~--~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.+.+.+.+. ...++++||++|.|+++|+++|.+.++...
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 456665542 225899999999999999999999887543
No 194
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6e-15 Score=126.19 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=120.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
+...+|.|||..|+|||+|+++++..-...+.-....++.....+.+++ .++.+|||.|+.+ +....-.++
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqer-------frsitqsyy 77 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER-------FRSITQSYY 77 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH-------HHHHHHHHh
Confidence 4456899999999999999999997533333322233555667777777 6789999999977 333445778
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYP 387 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii~ 387 (423)
+.|+.+++|+|++. ..+++-+-.|+.+++.|+. ...-.|+|.||+|+.+..++-+.+.+.+ .+.-++.
T Consensus 78 rsahalilvydisc-------qpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfle 148 (213)
T KOG0095|consen 78 RSAHALILVYDISC-------QPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLE 148 (213)
T ss_pred hhcceEEEEEeccc-------CcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhh
Confidence 89999999999997 4678888899999999864 2455688889999998876655555544 3455789
Q ss_pred EecccCcCHHHHHHHHHHHh
Q 014494 388 VCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l 407 (423)
+||+..+|++.|+..+.-.+
T Consensus 149 tsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hcccchhhHHHHHHHHHHHH
Confidence 99999999999987665443
No 195
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.3e-15 Score=133.91 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=123.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
....+|.|||.+++|||-||.+++.............+......+.+++ ....||||.|+.+.. .--..++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr-------AitSaYY 84 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR-------AITSAYY 84 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhc-------cccchhh
Confidence 3445699999999999999999998876665555555666667777777 577999999998732 2224677
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIY 386 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii 386 (423)
+.|-..++|+|++. ...++.+.+|+.||..+.. .+.++++|.||+||... .+.-+.+++.. +..++
T Consensus 85 rgAvGAllVYDITr-------~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~-~l~f~ 154 (222)
T KOG0087|consen 85 RGAVGALLVYDITR-------RQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE-GLFFL 154 (222)
T ss_pred cccceeEEEEechh-------HHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhc-CceEE
Confidence 88899999999987 4788999999999987754 37899999999999763 34445555543 67899
Q ss_pred EEecccCcCHHHHHHHHHHHh
Q 014494 387 PVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l 407 (423)
.+||+...|++..+..+...+
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EecccccccHHHHHHHHHHHH
Confidence 999999999999877665544
No 196
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.61 E-value=3.1e-14 Score=135.35 Aligned_cols=122 Identities=24% Similarity=0.377 Sum_probs=84.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC------------CC------cccceecceEEEEEeCCeeEEEEcCCCCcCCccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV------------GH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 298 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i------------~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~ 298 (423)
.|+++|++|+|||||+++|+...-.+ .+ ....|.......+.+.+.++.++||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 48999999999999999997531110 11 112344555667788889999999999975
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC--hHHHHHHH
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG--AEEVYEEL 376 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~--~~~~~~~l 376 (423)
+......++..+|.+++|+|+++. ...+...++..+.. .+.|.++|+||+|+.. .++.++.+
T Consensus 77 ---f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~i 140 (237)
T cd04168 77 ---FIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQEI 140 (237)
T ss_pred ---hHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHHH
Confidence 444566788899999999999873 12234444444433 2689999999999874 23334444
Q ss_pred HH
Q 014494 377 ER 378 (423)
Q Consensus 377 ~~ 378 (423)
++
T Consensus 141 ~~ 142 (237)
T cd04168 141 KE 142 (237)
T ss_pred HH
Confidence 43
No 197
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.6e-15 Score=150.81 Aligned_cols=176 Identities=24% Similarity=0.278 Sum_probs=121.9
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchH-HHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGH-AFLR 308 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~-~fl~ 308 (423)
++.+..|+|+|.||+|||||||+|++.+. -+++.++||.|..-..+.+++.++.+.||+|+-+.... -..++. ...+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 67788999999999999999999999865 47999999999999999999999999999999872211 111221 2346
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHH----hhhcccCCCCeEEEEeCCCcCChH-HHHH----HHHHH
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE----HHQEGLSDRPSLVVANKIDEDGAE-EVYE----ELERR 379 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~----~~~~~l~~~P~IiVlNKiDl~~~~-~~~~----~l~~~ 379 (423)
.++++|++++|+|+..... .......+ .+.... .+...+...|+|+++||+|+...- +... .+...
T Consensus 345 ~~~~advi~~vvda~~~~t----~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~ 419 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDT----ESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE 419 (531)
T ss_pred HHhhcCEEEEEeccccccc----ccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccc
Confidence 7899999999999943211 11222222 222221 111223568999999999998652 1111 11211
Q ss_pred -cCCCcEE-EEecccCcCHHHHHHHHHHHhccccC
Q 014494 380 -VQGVPIY-PVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 380 -~~~~~ii-~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
.+..+++ ++|+++++|++.|.+.+.+.+.....
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 1233444 49999999999999999887765443
No 198
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.61 E-value=6.8e-15 Score=130.35 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=117.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
..-+|.++|.+|+|||||+|.+...+...........+.....+.+++ ..+.||||.|+.+..+.+ . ..++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg----~---aFYR 80 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG----V---AFYR 80 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc----c---ceec
Confidence 345899999999999999999987543221111111233345556666 578899999998855533 2 3467
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCChH------HHHHHHHHHcCCC
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGAE------EVYEELERRVQGV 383 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~~------~~~~~l~~~~~~~ 383 (423)
.+|++++|+|+.. ..+++.+..|..|+..++. .-..-|.||+.||+|+.+.. ...+.......+.
T Consensus 81 gaDcCvlvydv~~-------~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gni 153 (210)
T KOG0394|consen 81 GADCCVLVYDVNN-------PKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNI 153 (210)
T ss_pred CCceEEEEeecCC-------hhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCc
Confidence 8999999999987 4788999999998876642 12357999999999997632 2233344444688
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++.+||+...|+++.+..+.+..-..
T Consensus 154 pyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 154 PYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred eeEEecccccccHHHHHHHHHHHHHhc
Confidence 999999999999999988887665433
No 199
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=1.8e-14 Score=153.19 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=115.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC------CC----------CcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA------VG----------HYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~------i~----------~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
..|++||+.++|||||+.+|....-. +. .....|+......+.+.+..+.++||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D----- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD----- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH-----
Confidence 47999999999999999999753111 11 1224566666677888899999999999865
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHH
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELE 377 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~ 377 (423)
+.......+..+|.+++|+|++. .+..+...++..+.. .+.|.|+|+||+|+... .++.+.+.
T Consensus 77 --F~~ev~~~l~~aD~alLVVDa~~--------G~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei~ 141 (594)
T TIGR01394 77 --FGGEVERVLGMVDGVLLLVDASE--------GPMPQTRFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEVF 141 (594)
T ss_pred --HHHHHHHHHHhCCEEEEEEeCCC--------CCcHHHHHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence 55566778889999999999986 233444555555433 26899999999998643 34445554
Q ss_pred HHcC---------CCcEEEEecccCc----------CHHHHHHHHHHHhcccc
Q 014494 378 RRVQ---------GVPIYPVCAVLEE----------GVPELKVGLRMLVNGEK 411 (423)
Q Consensus 378 ~~~~---------~~~ii~vSA~~g~----------gi~eL~~~i~~~l~~~~ 411 (423)
+.+. ..+++++||+++. |++.|++.|.+.++...
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 4431 3579999999995 79999999999887553
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.60 E-value=1.7e-14 Score=152.99 Aligned_cols=154 Identities=25% Similarity=0.251 Sum_probs=96.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC------------------CeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------------DIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~------------------~~~i~l~DtpG~i~~a 296 (423)
.+.|+++|.+|+||||||++|++..........+|.+.....+..+ ...+.+|||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~-- 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA-- 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh--
Confidence 3589999999999999999999875432222222321111111111 12488999999854
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH------
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE------ 370 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~------ 370 (423)
+.......+..+|++++|+|+++... ..... .+..+.. .+.|.|+|+||+|+....
T Consensus 82 -----f~~l~~~~~~~aD~~IlVvD~~~g~~-------~qt~e-~i~~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 82 -----FTNLRKRGGALADLAILIVDINEGFK-------PQTQE-ALNILRM-----YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred -----HHHHHHHHHhhCCEEEEEEECCcCCC-------HhHHH-HHHHHHH-----cCCCEEEEEECCCccchhhhccCc
Confidence 33344556788999999999986321 11111 1222221 268999999999996310
Q ss_pred -----------HH-----------HHHHHH-------------HcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 371 -----------EV-----------YEELER-------------RVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 371 -----------~~-----------~~~l~~-------------~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.+ ...|.+ .....++++|||++|+|+++|+.+|..+.+
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00 001121 113468999999999999999998865443
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.60 E-value=3.8e-14 Score=150.78 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=114.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCC----------------CCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH 297 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i----------------~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~ 297 (423)
.+.+|+++|+.++|||||+++|+...-.+ ......|.......+.+.+..+.+|||||+.+
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--- 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--- 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch---
Confidence 45689999999999999999998631111 11234566666677778889999999999876
Q ss_pred ccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHH
Q 014494 298 ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEE 375 (423)
Q Consensus 298 ~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~ 375 (423)
+...+...+..+|.+++|+|++.. +..+...++..+.. .+.|.|+|+||+|+... +..++.
T Consensus 81 ----f~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl~e 143 (607)
T PRK10218 81 ----FGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFA-----YGLKPIVVINKVDRPGARPDWVVDQ 143 (607)
T ss_pred ----hHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHH-----cCCCEEEEEECcCCCCCchhHHHHH
Confidence 444566788999999999999862 22333344443322 36899999999998653 344455
Q ss_pred HHHHc---------CCCcEEEEecccCc----------CHHHHHHHHHHHhcccc
Q 014494 376 LERRV---------QGVPIYPVCAVLEE----------GVPELKVGLRMLVNGEK 411 (423)
Q Consensus 376 l~~~~---------~~~~ii~vSA~~g~----------gi~eL~~~i~~~l~~~~ 411 (423)
+.+.+ ...+++++||++|. |+..|++.|.+.++...
T Consensus 144 i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 144 VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 55543 14679999999998 58899999998887553
No 202
>CHL00071 tufA elongation factor Tu
Probab=99.60 E-value=1.9e-14 Score=147.53 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=104.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC----------------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~----------------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
..|+++|.+|+|||||+++|++.... .......|.+...-.+..++.++.++||||+.+
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~----- 87 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-----
Confidence 37999999999999999999874211 111245666665555556678899999999643
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHHHH----
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE---- 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~~~---- 374 (423)
+.......+..+|++++|+|+... ...+...++..+.. ...| .|+++||+|+.+.++..+
T Consensus 88 --~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~~~ 152 (409)
T CHL00071 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQ-----VGVPNIVVFLNKEDQVDDEELLELVEL 152 (409)
T ss_pred --HHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEEccCCCCHHHHHHHHHH
Confidence 555566778889999999999863 22333344433322 2578 567899999987544332
Q ss_pred HHHHHc-----C--CCcEEEEecccCcC------------------HHHHHHHHHHHhc
Q 014494 375 ELERRV-----Q--GVPIYPVCAVLEEG------------------VPELKVGLRMLVN 408 (423)
Q Consensus 375 ~l~~~~-----~--~~~ii~vSA~~g~g------------------i~eL~~~i~~~l~ 408 (423)
.+.+.+ + ..+++++||.++.+ +..|++.|...++
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 333332 1 26899999998863 4667777776653
No 203
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.60 E-value=5.1e-14 Score=131.60 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=101.7
Q ss_pred CeEEEECCCCCcHHHHHHHH-HcCCCCCCCcccceecceEEEEE--eCC--eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAI-SRAKPAVGHYSFTTLRPNLGNMN--FDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~L-sg~~~~i~~~~ftTl~~~~g~v~--~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
.+|+++|++|||||||++++ ++. .. ..|. +|......... .++ ..+.+|||+|... +......++
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~-~~-~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~-------~~~~~~~~~ 79 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGE-FE-KKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEK-------FGGLRDGYY 79 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCC-CC-CCCC-CccceEEEEEEEEECCeEEEEEEEECCCchh-------hhhhhHHHh
Confidence 37999999999999999754 443 11 1121 22333322222 222 6789999999754 222223456
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYP 387 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~ 387 (423)
..++++++|+|+++ ..++..+..+...+.... .+.|+++|+||+|+.... +.. .+.+. .+..++.
T Consensus 80 ~~~~~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~-~~~~~~e 147 (215)
T PTZ00132 80 IKGQCAIIMFDVTS-------RITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKARQI-TFHRK-KNLQYYD 147 (215)
T ss_pred ccCCEEEEEEECcC-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHHHH-HHHHH-cCCEEEE
Confidence 67899999999987 355666666666665432 368999999999986432 222 22233 3567899
Q ss_pred EecccCcCHHHHHHHHHHHhccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+++.|+++++.+|.+.+...
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999888776543
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=1.7e-14 Score=147.76 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=100.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC---CCcccceecceEEEE--------------------E------eCCeeEEEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV---GHYSFTTLRPNLGNM--------------------N------FDDIQITVA 287 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i---~~~~ftTl~~~~g~v--------------------~------~~~~~i~l~ 287 (423)
+|+++|++++|||||+++|++..... ......|.......+ . .....+.++
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 85 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFV 85 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 79999999999999999998742210 001111221111000 0 013578999
Q ss_pred cCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 288 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 288 DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
||||+.+ +...+...+..+|++++|+|+++.. +..+....+..+. .+..+|.|+|+||+|+.
T Consensus 86 DtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l~----~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 86 DAPGHET-------LMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMALE----IIGIKNIVIVQNKIDLV 147 (406)
T ss_pred ECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHHH----HcCCCeEEEEEEccccC
Confidence 9999865 5566777788899999999998632 0111122222221 12235789999999998
Q ss_pred ChHH---HHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 368 GAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 368 ~~~~---~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+.+. ..+.+.+.+ ...+++++||++++|+++|+++|...+..
T Consensus 148 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 6532 234444433 24689999999999999999999987763
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.59 E-value=1.6e-14 Score=148.89 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=98.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC-------------------------------CCcccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV-------------------------------GHYSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i-------------------------------~~~~ftTl~~~~g~v~~~~~~i~ 285 (423)
.|+++|++|+|||||+++|+...-.+ ...+.+|.+.....+..++..+.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~ 87 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFT 87 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEE
Confidence 79999999999999999997432111 11467888888888888889999
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
++||||+.. +.......+..+|++++|+|+++.. ....+....+..+.. +...|.|+|+||+|
T Consensus 88 liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~------~~~~~~~~~~~~~~~----~~~~~iivviNK~D 150 (425)
T PRK12317 88 IVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAG------GVMPQTREHVFLART----LGINQLIVAINKMD 150 (425)
T ss_pred EEECCCccc-------chhhHhhchhcCCEEEEEEEcccCC------CCCcchHHHHHHHHH----cCCCeEEEEEEccc
Confidence 999999754 3334445567899999999998620 011111112222211 12346888999999
Q ss_pred cCCh-H----HHHHHHHHHc---C----CCcEEEEecccCcCHHHH
Q 014494 366 EDGA-E----EVYEELERRV---Q----GVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 366 l~~~-~----~~~~~l~~~~---~----~~~ii~vSA~~g~gi~eL 399 (423)
+... . ...+.+.+.+ . ..++++|||++|+|++++
T Consensus 151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 9752 1 1223333332 1 357999999999999873
No 206
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.1e-14 Score=127.46 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=114.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCccccee--cceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTL--RPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl--~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
.++.++|..|+|||+||.+++..... ..+. .|+ +.....+.+++ .++.+|||.|+.. +..-..++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~-~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-------frsv~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQ-PVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-------FRSVTRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcc-cccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH-------HHHHHHHHhc
Confidence 37889999999999999999986433 2222 333 33344566776 6789999999976 3333456788
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~ 387 (423)
.|...|+|+|+.. ++++..+..|+.++..++ ..+.-++++.||+|+.... +.-+.+.+. .+..++.
T Consensus 78 ~a~GalLVydit~-------r~sF~hL~~wL~D~rq~~--~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-hgLifmE 147 (216)
T KOG0098|consen 78 GAAGALLVYDITR-------RESFNHLTSWLEDARQHS--NENMVIMLIGNKSDLEARREVSKEEGEAFARE-HGLIFME 147 (216)
T ss_pred cCcceEEEEEccc-------hhhHHHHHHHHHHHHHhc--CCCcEEEEEcchhhhhccccccHHHHHHHHHH-cCceeeh
Confidence 8999999999997 588999999999988764 2356667777999998653 334555555 4778889
Q ss_pred EecccCcCHHHHHHHHHHHh
Q 014494 388 VCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l 407 (423)
+||++++|+++.+..+...+
T Consensus 148 TSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHH
Confidence 99999999999876665444
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=3e-14 Score=145.32 Aligned_cols=154 Identities=20% Similarity=0.243 Sum_probs=103.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCC----------------CCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAV----------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i----------------~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
-+|+++|+.++|||||+++|++..... ......|.+...-.+..++..+.++||||+.+
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~----- 87 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-----
Confidence 479999999999999999998631110 11335566554444444567899999999754
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHHHH----
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE---- 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~~~---- 374 (423)
+.......+..+|++++|+|+.... ..+...++..+.. ...| .|+|+||+|+.+.++..+
T Consensus 88 --f~~~~~~~~~~~d~~llVvd~~~g~--------~~~t~~~~~~~~~-----~g~~~~IvviNK~D~~~~~~~~~~i~~ 152 (394)
T PRK12736 88 --YVKNMITGAAQMDGAILVVAATDGP--------MPQTREHILLARQ-----VGVPYLVVFLNKVDLVDDEELLELVEM 152 (394)
T ss_pred --HHHHHHHHHhhCCEEEEEEECCCCC--------chhHHHHHHHHHH-----cCCCEEEEEEEecCCcchHHHHHHHHH
Confidence 4455566677899999999987631 1222333333322 2577 567899999985443332
Q ss_pred HHHHHc-------CCCcEEEEecccCc--------CHHHHHHHHHHHhcc
Q 014494 375 ELERRV-------QGVPIYPVCAVLEE--------GVPELKVGLRMLVNG 409 (423)
Q Consensus 375 ~l~~~~-------~~~~ii~vSA~~g~--------gi~eL~~~i~~~l~~ 409 (423)
++.+.+ ...+++++||+++. ++++|++.+.+.++.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 333332 13589999999983 688999998888763
No 208
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.59 E-value=1.2e-14 Score=136.58 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=96.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCC---CC----------------------C------CCcccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAK---PA----------------------V------GHYSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~---~~----------------------i------~~~~ftTl~~~~g~v~~~~~~i~ 285 (423)
.|+++|++++|||||+.+|.... .. . .....+|.+.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999995320 00 0 11235678888888888899999
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
++||||+.. +...+...+..+|++++|+|+++.... .......+....+..+ ..+..+|+|+|+||+|
T Consensus 81 liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~iiivvNK~D 148 (219)
T cd01883 81 ILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFE-AGFEKGGQTREHALLA----RTLGVKQLIVAVNKMD 148 (219)
T ss_pred EEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccc-cccccccchHHHHHHH----HHcCCCeEEEEEEccc
Confidence 999999754 444556677889999999999873110 0000111111111111 1222468888999999
Q ss_pred cCCh---H----HHHHHHHHHc-------CCCcEEEEecccCcCHH
Q 014494 366 EDGA---E----EVYEELERRV-------QGVPIYPVCAVLEEGVP 397 (423)
Q Consensus 366 l~~~---~----~~~~~l~~~~-------~~~~ii~vSA~~g~gi~ 397 (423)
+... + .+.+.+...+ ...++++|||++|.||+
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 149 DVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9731 1 2333333222 13679999999999987
No 209
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.58 E-value=9.9e-15 Score=124.65 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=114.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
.+.+||..|||||||+|.++... -..+...|...+...+.-.+..+.+||+||+-. +...|-++.+.++++
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~--~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r-------frsmWerycR~v~ai 92 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQ--YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRGVSAI 92 (186)
T ss_pred eEEEEeeccCCcceEEEEEeecc--chhhhcccccceeEEeccCceEEEEEecCCCcc-------HHHHHHHHhhcCcEE
Confidence 57899999999999999886531 122333455566667776778999999999976 566778889999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc------CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV------QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~------~~~~ii~vSA 390 (423)
+||+|++++ +.+...+.-+..| .+.+.+...|.+++.||.|++++-...+.+.++- ....++.||+
T Consensus 93 vY~VDaad~-------~k~~~sr~EL~~L-L~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 93 VYVVDAADP-------DKLEASRSELHDL-LDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred EEEeecCCc-------ccchhhHHHHHHH-hcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEE
Confidence 999999984 3333322222222 2457788999999999999987643333333322 3467899999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+...||+.+.++|.+..+.
T Consensus 165 ke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cCCccHHHHHHHHHHHhhh
Confidence 9999999999999887643
No 210
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=2.6e-14 Score=123.82 Aligned_cols=157 Identities=20% Similarity=0.161 Sum_probs=114.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|.|||.+|+||||||-+++........-....++..+.++.+++ .++.||||+|+.+... ....+++.|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt-------LTpSyyRga 84 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT-------LTPSYYRGA 84 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc-------cCHhHhccC
Confidence 3789999999999999999987543322111123455566777776 6789999999987332 234678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~v 388 (423)
..+|+|+|++. ++.+..+..|++|+..|... .+.-.++|.||+|.... ++-++ +++.+ ..-++.+
T Consensus 85 qGiIlVYDVT~-------Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~k-fAr~h-~~LFiE~ 154 (209)
T KOG0080|consen 85 QGIILVYDVTS-------RDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLK-FARKH-RCLFIEC 154 (209)
T ss_pred ceeEEEEEccc-------hhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHH-HHHhh-CcEEEEc
Confidence 99999999998 58888999999999988532 24455778899998643 23233 33332 4568899
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||++.+|++..++.+.+.+-+
T Consensus 155 SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred chhhhccHHHHHHHHHHHHhc
Confidence 999999999988877765543
No 211
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.58 E-value=7.8e-14 Score=128.64 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=109.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCC--cccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHH----HHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFL----RHI 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~--~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl----~~i 310 (423)
+|+|||.||||||||+|+|++.+..... .+..|..+..+...+.+..+.++||||+.+.......+..... ...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 6899999999999999999998665443 3467777788888888899999999999875432212222222 223
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------HHHHHHHHHc
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------EVYEELERRV 380 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------~~~~~l~~~~ 380 (423)
...+++++|+|+.. .. .....+++.+......-..++.|+|+|+.|..... ..++.+.+.+
T Consensus 82 ~g~~~illVi~~~~-~t--------~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c 152 (196)
T cd01852 82 PGPHAFLLVVPLGR-FT--------EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC 152 (196)
T ss_pred CCCEEEEEEEECCC-cC--------HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh
Confidence 45789999999875 11 22233334443321111237899999999976532 2233333333
Q ss_pred CCCcEEEEe-----cccCcCHHHHHHHHHHHhccccC
Q 014494 381 QGVPIYPVC-----AVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 381 ~~~~ii~vS-----A~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+..++.++ +..+.++++|++.|.+++.+...
T Consensus 153 -~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 153 -GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred -CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 22444444 45678899999999999987544
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.58 E-value=8e-14 Score=148.75 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=109.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCC---------CC------cccceecceEEEEEeC-----CeeEEEEcCCCC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD-----DIQITVADIPGL 292 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i---------~~------~~ftTl~~~~g~v~~~-----~~~i~l~DtpG~ 292 (423)
+.+.+|+|+|+.++|||||+.+|....-.+ .+ ....|.....-.+.|. +..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997531111 11 1234444444444443 378999999999
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--H
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--E 370 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~ 370 (423)
.+ +...+.+++..||.+++|+|+++.. .......+.. +.. .+.|.|+|+||+|+... +
T Consensus 85 ~d-------F~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~-~~~-----~~lpiIvViNKiDl~~a~~~ 144 (600)
T PRK05433 85 VD-------FSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYL-ALE-----NDLEIIPVLNKIDLPAADPE 144 (600)
T ss_pred HH-------HHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHH-HHH-----CCCCEEEEEECCCCCcccHH
Confidence 76 4455667888999999999998732 1222222221 111 26899999999999643 3
Q ss_pred HHHHHHHHHcC--CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 371 EVYEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 371 ~~~~~l~~~~~--~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
...+.+.+.+. ...++++||++|.|+++|+++|.+.++...
T Consensus 145 ~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 145 RVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 34455655542 235899999999999999999999887543
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=3.8e-14 Score=123.14 Aligned_cols=138 Identities=25% Similarity=0.299 Sum_probs=94.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|.|||+.+||||||+++|.+...... ....+.+.+ .++||||-+- ++..+.+..+.....||+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~---------KTq~i~~~~---~~IDTPGEyi---E~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK---------KTQAIEYYD---NTIDTPGEYI---ENPRFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC---------ccceeEecc---cEEECChhhe---eCHHHHHHHHHHHhhCCE
Confidence 4799999999999999999998643211 112233333 3489999532 244466677777889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEEEEeccc
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPVCAVL 392 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii~vSA~~ 392 (423)
+++|.|++..... -|... . ...++|+|=|+||+|+...++..+..++.+ .-..+|.||+.+
T Consensus 67 V~ll~dat~~~~~----~pP~f-----------a-~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 67 VLLLQDATEPRSV----FPPGF-----------A-SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred EEEEecCCCCCcc----CCchh-----------h-cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 9999999974321 11111 1 123799999999999994333333333332 334689999999
Q ss_pred CcCHHHHHHHHH
Q 014494 393 EEGVPELKVGLR 404 (423)
Q Consensus 393 g~gi~eL~~~i~ 404 (423)
++||++|.++|.
T Consensus 131 ~eGi~eL~~~L~ 142 (143)
T PF10662_consen 131 GEGIEELKDYLE 142 (143)
T ss_pred CcCHHHHHHHHh
Confidence 999999999875
No 214
>PRK12735 elongation factor Tu; Reviewed
Probab=99.58 E-value=3.1e-14 Score=145.24 Aligned_cols=153 Identities=23% Similarity=0.260 Sum_probs=103.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC-----CC-----------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK-----PA-----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~-----~~-----------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
-.|+++|++++|||||+++|++.. .. .......|.+.....+..++..+.++||||+.+
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~----- 87 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH-----
Confidence 379999999999999999998621 00 011335566655444555567899999999843
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeE-EEEeCCCcCChHHHHH----
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVYE---- 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-iVlNKiDl~~~~~~~~---- 374 (423)
+.......+..+|++++|+|+... ...+....+..+.. ...|.| +|+||+|+.+.++..+
T Consensus 88 --f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~~~~~ 152 (396)
T PRK12735 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred --HHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHH-----cCCCeEEEEEEecCCcchHHHHHHHHH
Confidence 555566777789999999999863 22233333333322 257866 5789999975433222
Q ss_pred HHHHHc-------CCCcEEEEecccCc----------CHHHHHHHHHHHhc
Q 014494 375 ELERRV-------QGVPIYPVCAVLEE----------GVPELKVGLRMLVN 408 (423)
Q Consensus 375 ~l~~~~-------~~~~ii~vSA~~g~----------gi~eL~~~i~~~l~ 408 (423)
++...+ ...+++++||+++. ++.+|++.|...++
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 232222 13689999999984 68889999988775
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=1e-13 Score=130.74 Aligned_cols=149 Identities=26% Similarity=0.284 Sum_probs=96.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC-----Ccc---------cce-------e-----------------cceEEEEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG-----HYS---------FTT-------L-----------------RPNLGNMN 278 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~-----~~~---------ftT-------l-----------------~~~~g~v~ 278 (423)
+|+++|..++|||||+++|+......+ .+. ..| + .+....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 478999999999999999985321100 000 000 0 00012333
Q ss_pred eCCeeEEEEcCCCCcCCccccccchHHHHHHHh--ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC
Q 014494 279 FDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 356 (423)
Q Consensus 279 ~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 356 (423)
..+..+.++||||+.. +.......+. .+|++++|+|+... ...+...++..+.. .+.|
T Consensus 81 ~~~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~-----~~ip 140 (224)
T cd04165 81 KSSKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALA-----LNIP 140 (224)
T ss_pred eCCcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCC
Confidence 4457899999999864 3344445553 68999999998763 22333444444433 2689
Q ss_pred eEEEEeCCCcCChHH---HHHHHHHHcC----------------------------CCcEEEEecccCcCHHHHHHHHHH
Q 014494 357 SLVVANKIDEDGAEE---VYEELERRVQ----------------------------GVPIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 357 ~IiVlNKiDl~~~~~---~~~~l~~~~~----------------------------~~~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
.++|+||+|+..... ..+.+++.+. ..++|++||.+|+|+++|...|..
T Consensus 141 ~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 141 VFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999999999976532 3344444332 248999999999999999887754
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=4.2e-14 Score=144.83 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=102.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEe---------------------C-----CeeEEE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNF---------------------D-----DIQITV 286 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~---------------------~-----~~~i~l 286 (423)
-.|+++|+.++|||||+.+|++.... .......|+........+ + ...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 37999999999999999999874111 111123344332211111 0 257899
Q ss_pred EcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCc
Q 014494 287 ADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDE 366 (423)
Q Consensus 287 ~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl 366 (423)
+||||+.+ +...++..+..+|++++|+|+++.. +..+....+..+.. +..+|.++|+||+|+
T Consensus 90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~~l~~l~~----~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 90 VDAPGHET-------LMATMLSGAALMDGAILVIAANEPC-------PQPQTKEHLMALDI----IGIKNIVIVQNKIDL 151 (411)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHHHHHHHHH----cCCCcEEEEEEeecc
Confidence 99999754 5556677777889999999998631 01111122222221 123578999999999
Q ss_pred CChHHH---HHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 367 DGAEEV---YEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 367 ~~~~~~---~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
.+.+.. .+.+++.+ ...+++++||+++.|+++|++.|...+...
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 764332 33444433 246899999999999999999999877643
No 217
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=3.1e-14 Score=121.68 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=121.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccce-ecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT-LRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftT-l~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
.....|+|.+|+|||+|+-++... ....+|..|+ .+..+..+.+++ ..+.||||+|... +......+++
T Consensus 8 LfkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr-------Frtitstyyr 79 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER-------FRTITSTYYR 79 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH-------HHHHHHHHcc
Confidence 345678999999999999999875 4555665443 677788888887 7889999999875 4444556788
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----HHHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----YEELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----~~~l~~~~~~~~ii~ 387 (423)
..+.++.|+|+++ .+++....+|+.++..-.+ ..|.++|.||.|.++...+ ...+... .+..+|.
T Consensus 80 gthgv~vVYDVTn-------~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~-mgie~FE 148 (198)
T KOG0079|consen 80 GTHGVIVVYDVTN-------GESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQ-MGIELFE 148 (198)
T ss_pred CCceEEEEEECcc-------hhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHh-cCchhee
Confidence 8999999999998 3788899999988865433 7899999999999876422 2222222 3678999
Q ss_pred EecccCcCHHHHHHHHHHHhccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+...|++..+..|.+.+...
T Consensus 149 TSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred hhhhhcccchHHHHHHHHHHHHH
Confidence 99999999999999888766443
No 218
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=6.3e-14 Score=142.99 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=104.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC----------------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~----------------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
.+|+++|+.++|||||+++|++.... .......|++.....+..++.++.++||||+.+
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 87 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-----
Confidence 37999999999999999999873110 011345676665555555668899999999843
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeE-EEEeCCCcCChHHHH----H
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVY----E 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-iVlNKiDl~~~~~~~----~ 374 (423)
+.......+..+|++++|+|+... ...+...++..+.. ...|.+ +++||+|+...++.+ +
T Consensus 88 --f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~~~~~ 152 (396)
T PRK00049 88 --YVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred --HHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHH-----cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence 444555667889999999998763 12333333333322 267876 578999998543322 2
Q ss_pred HHHHHc-------CCCcEEEEecccCc----------CHHHHHHHHHHHhc
Q 014494 375 ELERRV-------QGVPIYPVCAVLEE----------GVPELKVGLRMLVN 408 (423)
Q Consensus 375 ~l~~~~-------~~~~ii~vSA~~g~----------gi~eL~~~i~~~l~ 408 (423)
.+.+.+ ...+++++||+++. ++..|++.|...++
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 333332 23689999999875 57888888888765
No 219
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.5e-14 Score=119.64 Aligned_cols=165 Identities=16% Similarity=0.211 Sum_probs=126.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..++.++|...+|||||+.+-++....++-+....++.....+.-.+ ..+.+|||.|+.+ +....-.+++.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTayyRg 93 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTAYYRG 93 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHHHhhc
Confidence 34899999999999999999998755554444333444444444333 6789999999976 33444567889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
++.+++++|+++ .+++..++.|.-+++.|. -.+.|+|+|.||||+.+.. +....+.+.+ +..++.+
T Consensus 94 amgfiLmyDitN-------eeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eRvis~e~g~~l~~~L-GfefFEt 163 (193)
T KOG0093|consen 94 AMGFILMYDITN-------EESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSERVISHERGRQLADQL-GFEFFET 163 (193)
T ss_pred cceEEEEEecCC-------HHHHHHHHHHHHHheeee--ccCceEEEEecccCCccceeeeHHHHHHHHHHh-ChHHhhh
Confidence 999999999997 478888899988888773 3589999999999998653 3334455554 6689999
Q ss_pred ecccCcCHHHHHHHHHHHhccccCCcCC
Q 014494 389 CAVLEEGVPELKVGLRMLVNGEKSERLS 416 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~~~~~~~ 416 (423)
||+.+.|+++++.++...+.+...++.+
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKMSESLD 191 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999888776655543
No 220
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.56 E-value=7.7e-14 Score=135.13 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=97.3
Q ss_pred eEEEECCCCCcHHHHHHHHHc---CCCC---C------------CCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR---AKPA---V------------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 298 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg---~~~~---i------------~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~ 298 (423)
+|+++|++|+|||||+++|.. .... + .....+|++.....+.+.+.++.++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999953 2111 1 12335677778888889999999999999865
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHH
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEEL 376 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l 376 (423)
+.......+..+|++++|+|+.... ..+...++..+.. .++|.|+++||+|+... +...+.+
T Consensus 77 ---f~~~~~~~l~~aD~ailVVDa~~g~--------~~~t~~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~l 140 (270)
T cd01886 77 ---FTIEVERSLRVLDGAVAVFDAVAGV--------EPQTETVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQI 140 (270)
T ss_pred ---HHHHHHHHHHHcCEEEEEEECCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 4456678889999999999998632 2223344444433 36899999999999743 4566777
Q ss_pred HHHcCC---CcEEEEecc
Q 014494 377 ERRVQG---VPIYPVCAV 391 (423)
Q Consensus 377 ~~~~~~---~~ii~vSA~ 391 (423)
++.+.. ..++|||+.
T Consensus 141 ~~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 141 REKLGANPVPLQLPIGEE 158 (270)
T ss_pred HHHhCCCceEEEeccccC
Confidence 776632 235788875
No 221
>PLN03127 Elongation factor Tu; Provisional
Probab=99.55 E-value=1.5e-13 Score=141.90 Aligned_cols=154 Identities=23% Similarity=0.272 Sum_probs=103.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC------CCC----------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA------KPA----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~------~~~----------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
..|+++|+.++|||||+++|++. ... ....+..|.+...-.+..++.++.++||||+.+
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~----- 136 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD----- 136 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-----
Confidence 47999999999999999999743 100 111256777766666666668899999999854
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe-EEEEeCCCcCChHHHHH----
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-LVVANKIDEDGAEEVYE---- 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-IiVlNKiDl~~~~~~~~---- 374 (423)
+.......+..+|++++|+|+... ...+....+..+.. ...|. |+|+||+|+.+.++..+
T Consensus 137 --f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~-----~gip~iIvviNKiDlv~~~~~~~~i~~ 201 (447)
T PLN03127 137 --YVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQ-----VGVPSLVVFLNKVDVVDDEELLELVEM 201 (447)
T ss_pred --hHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHH-----cCCCeEEEEEEeeccCCHHHHHHHHHH
Confidence 444555566779999999998763 12333333333332 26785 67899999986443332
Q ss_pred HHHHHc-------CCCcEEEEecc---cCcC-------HHHHHHHHHHHhcc
Q 014494 375 ELERRV-------QGVPIYPVCAV---LEEG-------VPELKVGLRMLVNG 409 (423)
Q Consensus 375 ~l~~~~-------~~~~ii~vSA~---~g~g-------i~eL~~~i~~~l~~ 409 (423)
++.+.+ ...+++++||. ++.| +.+|++.|.+.++.
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 232322 13678898886 4444 78889998888763
No 222
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.2e-13 Score=118.66 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=114.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
...++.++|+.|+|||+||..+...+.+-..-....++.....+.+.+ .++.||||.|+.+ +..-...+++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-------FRSVtRsYYR 80 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-------FRSVTRSYYR 80 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHH-------HHHHHHHHhc
Confidence 345789999999999999999987644322111122333445566665 6789999999977 4344457788
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHH-HHHHc--CCCcEEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE-LERRV--QGVPIYPV 388 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~-l~~~~--~~~~ii~v 388 (423)
.|...++|+|+++ +++++.+..|+.....+++ .+.-+|++.||-|+....++.-. -.+.. ....++.+
T Consensus 81 GAAGAlLVYD~Ts-------rdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flET 151 (214)
T KOG0086|consen 81 GAAGALLVYDITS-------RDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 151 (214)
T ss_pred cccceEEEEeccc-------hhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeee
Confidence 8999999999998 5788888888877755432 23344444599999876553221 11111 34567899
Q ss_pred ecccCcCHHHH-HHHHHHHhccccCCcCCccc
Q 014494 389 CAVLEEGVPEL-KVGLRMLVNGEKSERLSLDK 419 (423)
Q Consensus 389 SA~~g~gi~eL-~~~i~~~l~~~~~~~~~~~~ 419 (423)
||++|+|+++- +.....++.+.....++.++
T Consensus 152 Sa~TGeNVEEaFl~c~~tIl~kIE~GElDPer 183 (214)
T KOG0086|consen 152 SALTGENVEEAFLKCARTILNKIESGELDPER 183 (214)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcCCCHHH
Confidence 99999999985 45555556555555555444
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=1.5e-13 Score=140.20 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=98.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC------C----------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP------A----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~------~----------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
..|+++|+.++|||||+++|++... . .......|.+...-.+..++..+.++||||+.+
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~----- 87 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH-----
Confidence 3799999999999999999974310 0 011245666655444444557899999999864
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeE-EEEeCCCcCChHHHHH----
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VVANKIDEDGAEEVYE---- 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-iVlNKiDl~~~~~~~~---- 374 (423)
+...+...+..+|++++|+|+... ...+....+..+.. ...|.+ +|+||+|+.+.++..+
T Consensus 88 --f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~~~~ 152 (394)
T TIGR00485 88 --YVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (394)
T ss_pred --HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence 445556677788999999999863 22233333333322 256766 5799999986543222
Q ss_pred HHHHHc-----C--CCcEEEEecccCc--------CHHHHHHHHHHHhc
Q 014494 375 ELERRV-----Q--GVPIYPVCAVLEE--------GVPELKVGLRMLVN 408 (423)
Q Consensus 375 ~l~~~~-----~--~~~ii~vSA~~g~--------gi~eL~~~i~~~l~ 408 (423)
++++.+ . ..+++++||+++. ++.+|++.|...++
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 333332 1 2689999999874 34556666655443
No 224
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.53 E-value=9.1e-14 Score=143.25 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=96.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCC-------------------------------CCcccceecceEEEEEeCCeeE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------------GHYSFTTLRPNLGNMNFDDIQI 284 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i-------------------------------~~~~ftTl~~~~g~v~~~~~~i 284 (423)
..|+++|+.++|||||+++|+...-.+ ......|++.....+.+++..+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i 87 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEV 87 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEE
Confidence 479999999999999999997421110 1123567777777788888999
Q ss_pred EEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 014494 285 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
.+|||||+.+ +...+...+..+|++++|+|+++.... ...+....+..+ ..+...|.|+|+||+
T Consensus 88 ~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~----~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 88 TIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLA----RTLGINQLIVAINKM 151 (426)
T ss_pred EEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHH----HHcCCCeEEEEEECh
Confidence 9999999754 444555667889999999999874110 001111111111 112235788899999
Q ss_pred CcCCh-HH----HHHHHHHHc-------CCCcEEEEecccCcCHHH
Q 014494 365 DEDGA-EE----VYEELERRV-------QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 365 Dl~~~-~~----~~~~l~~~~-------~~~~ii~vSA~~g~gi~e 398 (423)
|+... .+ ..+++.+.+ ...++++|||+++.|+++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 99742 11 122333222 136799999999999986
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=99.52 E-value=3.3e-13 Score=140.20 Aligned_cols=140 Identities=23% Similarity=0.290 Sum_probs=95.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCC----------------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPA----------------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 298 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~----------------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~ 298 (423)
..+|+++|++++|||||+++|++.... .......|++.....+..++..+.++||||+.+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~---- 156 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD---- 156 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH----
Confidence 347999999999999999999853111 112234566665556666778999999999865
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHHHH---
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEVYE--- 374 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~~~--- 374 (423)
+.......+..+|++++|+|+... ...+...++..+.. ...| .|+++||+|+.+.++..+
T Consensus 157 ---f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~i~ 220 (478)
T PLN03126 157 ---YVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLELVE 220 (478)
T ss_pred ---HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCeEEEEEecccccCHHHHHHHHH
Confidence 555566777889999999999863 22333334333322 2677 567899999986543322
Q ss_pred -HHHHHc-------CCCcEEEEecccCc
Q 014494 375 -ELERRV-------QGVPIYPVCAVLEE 394 (423)
Q Consensus 375 -~l~~~~-------~~~~ii~vSA~~g~ 394 (423)
++.+.+ ...+++++||.++.
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 333332 25689999998874
No 226
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1e-13 Score=123.54 Aligned_cols=153 Identities=27% Similarity=0.324 Sum_probs=112.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|.++|..||||||+|..|--.+.... ..|+..++-.+.+.+.+|.+||.-|+.+ +...|..++..++.+
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k-------~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEK-------LRPLWKHYFQNTQGL 88 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCcc-------cccchhhhccCCcEE
Confidence 789999999999999998865433222 2245566678889999999999999965 555677889999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhh--cccCCCCeEEEEeCCCcCChH---HHHHHHHH--Hc-CCCcEEEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ--EGLSDRPSLVVANKIDEDGAE---EVYEELER--RV-QGVPIYPV 388 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~--~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~--~~-~~~~ii~v 388 (423)
|||+|.++. +.+.....+|.... +.+...|.++.+||.|++.+- ++.+.+.- .. ..+.+-.+
T Consensus 89 IfVvDS~Dr----------~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~ 158 (181)
T KOG0070|consen 89 IFVVDSSDR----------ERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQST 158 (181)
T ss_pred EEEEeCCcH----------HHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeec
Confidence 999999872 33333334443332 235688999999999998653 33332221 11 35678889
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
+|.+|+|+.+-++++.+.+..
T Consensus 159 ~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 159 CAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccccHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 227
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.51 E-value=2.8e-13 Score=125.12 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=97.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC-CCcc----cceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHH-
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV-GHYS----FTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRH- 309 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i-~~~~----ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~- 309 (423)
+|+++|.+|||||||+|+|++..... ...+ -+|.. ...+... ...+.+|||||+.+... ....+++.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~----~~~~~l~~~ 76 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMK--RTPYPHPKFPNVTLWDLPGIGSTAF----PPDDYLEEM 76 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccC--ceeeecCCCCCceEEeCCCCCcccC----CHHHHHHHh
Confidence 68999999999999999999853321 1111 11211 1122212 24789999999865322 12233333
Q ss_pred -HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh------------HHHHHHH
Q 014494 310 -IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------------EEVYEEL 376 (423)
Q Consensus 310 -i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------------~~~~~~l 376 (423)
+..+|++++|.+.. ....-..++..+..+ .+|.++|+||+|+... ++.++.+
T Consensus 77 ~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i 141 (197)
T cd04104 77 KFSEYDFFIIISSTR----------FSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEI 141 (197)
T ss_pred CccCcCEEEEEeCCC----------CCHHHHHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHHH
Confidence 35678877775422 112223344444432 6899999999998532 2333333
Q ss_pred HHHc---------CCCcEEEEecc--cCcCHHHHHHHHHHHhccccCCc
Q 014494 377 ERRV---------QGVPIYPVCAV--LEEGVPELKVGLRMLVNGEKSER 414 (423)
Q Consensus 377 ~~~~---------~~~~ii~vSA~--~g~gi~eL~~~i~~~l~~~~~~~ 414 (423)
++.+ ...+++.+|+. .+.++..|.+.|...|++.+...
T Consensus 142 ~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 142 RDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 3322 23589999998 57999999999999998766543
No 228
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.51 E-value=2.5e-13 Score=144.50 Aligned_cols=153 Identities=27% Similarity=0.282 Sum_probs=92.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccce------ecceE------EE------EEeCCeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTT------LRPNL------GN------MNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftT------l~~~~------g~------v~~~~~~i~l~DtpG~i~~a 296 (423)
.+.|+++|++|+|||||+++|++...........| ..+.. +. ..+.-..+.+|||||+..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~-- 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA-- 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH--
Confidence 35899999999999999999987643211111111 11110 00 000001378999999865
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-------
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------- 369 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------- 369 (423)
+.....+.+..+|++++|+|+++... ..... .+..+.. .+.|.++++||+|+...
T Consensus 84 -----f~~~~~~~~~~aD~~IlVvDa~~g~~----~qt~e----~i~~~~~-----~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 84 -----FTNLRKRGGALADIAILVVDINEGFQ----PQTIE----AINILKR-----RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred -----HHHHHHHhHhhCCEEEEEEECCCCCC----HhHHH----HHHHHHH-----cCCCEEEEEECcCCchhhhhhcCc
Confidence 33334456678999999999986321 11122 2222221 37899999999998521
Q ss_pred ----------HH-----------HHHHHHH-------------HcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 370 ----------EE-----------VYEELER-------------RVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 370 ----------~~-----------~~~~l~~-------------~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
.. +...|.+ .....+++++||++|+|+++|++.+....
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 0011111 11246799999999999999998876543
No 229
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.49 E-value=3.7e-13 Score=137.77 Aligned_cols=143 Identities=22% Similarity=0.271 Sum_probs=94.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC---------------C------------------CcccceecceEEEEEeCCee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV---------------G------------------HYSFTTLRPNLGNMNFDDIQ 283 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i---------------~------------------~~~ftTl~~~~g~v~~~~~~ 283 (423)
+|+++|+.+||||||+.+|....-.+ + .....|.+.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 58999999999999999996431111 0 01134567767777777889
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
+.++||||+.+ +.......+..+|++++|+|+..... .+....+..+.. +..++.|+|+||
T Consensus 82 ~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~--------~qt~~~~~~~~~----~~~~~iivviNK 142 (406)
T TIGR02034 82 FIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVL--------EQTRRHSYIASL----LGIRHVVLAVNK 142 (406)
T ss_pred EEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCc--------cccHHHHHHHHH----cCCCcEEEEEEe
Confidence 99999999754 44455667889999999999986422 121222222211 123467889999
Q ss_pred CCcCChH-HHH----HHHHH---Hc--CCCcEEEEecccCcCHHH
Q 014494 364 IDEDGAE-EVY----EELER---RV--QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 364 iDl~~~~-~~~----~~l~~---~~--~~~~ii~vSA~~g~gi~e 398 (423)
+|+.... +.+ +.+.. .+ ...++++|||++|+|+++
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9997532 222 22222 11 235799999999999986
No 230
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.49 E-value=1e-12 Score=138.25 Aligned_cols=117 Identities=23% Similarity=0.341 Sum_probs=81.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc---CCCCC-------------CCcc------cceecceEEEEEeCCeeEEEEcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR---AKPAV-------------GHYS------FTTLRPNLGNMNFDDIQITVADI 289 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg---~~~~i-------------~~~~------ftTl~~~~g~v~~~~~~i~l~Dt 289 (423)
.....+|+|+|++|||||||+++|.. .-... .++. ..|+......+.+.+..+.++||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 34556999999999999999999963 21111 1111 22334445567778899999999
Q ss_pred CCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 290 PGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 290 pG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
||+.+ +......++..+|++++|+|++... ..+...++..+.. .+.|.|+++||+|+..
T Consensus 87 PG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv--------~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHED-------FSEDTYRTLTAVDSALMVIDAAKGV--------EPQTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchh-------hHHHHHHHHHHCCEEEEEEecCCCC--------CHHHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence 99865 4445567788999999999998631 2233444443322 3789999999999864
No 231
>PRK12739 elongation factor G; Reviewed
Probab=99.48 E-value=8.1e-13 Score=143.85 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=86.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC---CCCC---C------------CcccceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA---KPAV---G------------HYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~---~~~i---~------------~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
..+.+|++||++|+|||||+++|... .... . ....+|++.....+.+++..+.++||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34568999999999999999999642 1111 1 1446788888888999999999999999865
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
+.......+..+|++++|+|+.... ..+...++..+.. .+.|.|+++||+|+..
T Consensus 86 -------f~~e~~~al~~~D~~ilVvDa~~g~--------~~qt~~i~~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 -------FTIEVERSLRVLDGAVAVFDAVSGV--------EPQSETVWRQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred -------HHHHHHHHHHHhCeEEEEEeCCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 4446778889999999999998632 2233344444433 2689999999999874
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.48 E-value=1e-12 Score=127.24 Aligned_cols=143 Identities=20% Similarity=0.322 Sum_probs=96.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---C---------CCc------ccceecceEEEEEeCCeeEEEEcCCCCcCCccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---V---------GHY------SFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 298 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i---------~~~------~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~ 298 (423)
+|+|+|++|||||||+++|...... . .++ ...|+.+....+.+.+..+.++||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 4899999999999999999643111 1 111 13455666777888889999999999864
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHH
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEEL 376 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l 376 (423)
+.......+..+|.+++|+|++... ......++..+.. .+.|.++|+||+|+... .+.++.+
T Consensus 77 ---f~~~~~~~l~~aD~~i~Vvd~~~g~--------~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~l 140 (268)
T cd04170 77 ---FVGETRAALRAADAALVVVSAQSGV--------EVGTEKLWEFADE-----AGIPRIIFINKMDRERADFDKTLAAL 140 (268)
T ss_pred ---HHHHHHHHHHHCCEEEEEEeCCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHHH
Confidence 4445667788999999999998731 1222333333332 36899999999998764 3556777
Q ss_pred HHHcCCCcEEEEe--cccCcCHHHHH
Q 014494 377 ERRVQGVPIYPVC--AVLEEGVPELK 400 (423)
Q Consensus 377 ~~~~~~~~ii~vS--A~~g~gi~eL~ 400 (423)
++.+ +.++++++ ..++.++..+.
T Consensus 141 ~~~~-~~~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 141 QEAF-GRPVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred HHHh-CCCeEEEEecccCCCceeEEE
Confidence 7766 33444444 44444443333
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.48 E-value=1.3e-12 Score=126.35 Aligned_cols=125 Identities=22% Similarity=0.339 Sum_probs=85.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC---CC-------------CCCcc------cceecceEEEEEeCCeeEEEEcCCCCc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK---PA-------------VGHYS------FTTLRPNLGNMNFDDIQITVADIPGLI 293 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~---~~-------------i~~~~------ftTl~~~~g~v~~~~~~i~l~DtpG~i 293 (423)
..|+|+|++|||||||+++|+... .. +.++. ..|+......+.+.+..+.++||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997421 11 11111 123334455677888999999999986
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HH
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EE 371 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~ 371 (423)
+ +.......+..+|++++|+|++... ..+...++..+.. .+.|.++++||+|+... ..
T Consensus 83 d-------f~~~~~~~l~~aD~~IlVvda~~g~--------~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~~ 142 (267)
T cd04169 83 D-------FSEDTYRTLTAVDSAVMVIDAAKGV--------EPQTRKLFEVCRL-----RGIPIITFINKLDREGRDPLE 142 (267)
T ss_pred H-------HHHHHHHHHHHCCEEEEEEECCCCc--------cHHHHHHHHHHHh-----cCCCEEEEEECCccCCCCHHH
Confidence 5 3344556788999999999998631 1223334333322 37899999999998754 34
Q ss_pred HHHHHHHHc
Q 014494 372 VYEELERRV 380 (423)
Q Consensus 372 ~~~~l~~~~ 380 (423)
.++.+++.+
T Consensus 143 ~~~~l~~~l 151 (267)
T cd04169 143 LLDEIEEEL 151 (267)
T ss_pred HHHHHHHHH
Confidence 567777766
No 234
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.48 E-value=3.6e-13 Score=145.30 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=94.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC---------------C------------------cccceecceEEEEEeCCee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG---------------H------------------YSFTTLRPNLGNMNFDDIQ 283 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~---------------~------------------~~ftTl~~~~g~v~~~~~~ 283 (423)
.|+++|++|||||||+++|+...-.+. . ....|.+.....+.+++.+
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~ 105 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRK 105 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCce
Confidence 699999999999999999976422111 0 0134566666777777889
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
+.++||||+.. +.......+..+|++++|+|+..... .+.......+.. +..+|.|+|+||
T Consensus 106 ~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~--------~~t~e~~~~~~~----~~~~~iivvvNK 166 (632)
T PRK05506 106 FIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVL--------TQTRRHSFIASL----LGIRHVVLAVNK 166 (632)
T ss_pred EEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCcc--------ccCHHHHHHHHH----hCCCeEEEEEEe
Confidence 99999999753 44445566788999999999976321 111111111211 123677889999
Q ss_pred CCcCCh-HH----HHHHHHH---Hc--CCCcEEEEecccCcCHHH
Q 014494 364 IDEDGA-EE----VYEELER---RV--QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 364 iDl~~~-~~----~~~~l~~---~~--~~~~ii~vSA~~g~gi~e 398 (423)
+|+... ++ +...+.+ .+ ...++++|||++|.|+++
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 999742 22 2223332 11 335799999999999974
No 235
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.48 E-value=5.1e-13 Score=137.96 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=100.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC---CCcccceecceEEEE---------------EeC------------------
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV---GHYSFTTLRPNLGNM---------------NFD------------------ 280 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i---~~~~ftTl~~~~g~v---------------~~~------------------ 280 (423)
.||++|+-..|||||+.+|++..... .-....|.+...... .++
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTL 115 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccc
Confidence 79999999999999999999863321 111111111100000 000
Q ss_pred CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 281 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 281 ~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
...+.++|+||+.. +....+..+..+|.+++|+|+.... +..+....+..+. .+.-+|.|+|
T Consensus 116 ~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~----~lgi~~iIVv 177 (460)
T PTZ00327 116 KRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVE----IMKLKHIIIL 177 (460)
T ss_pred cceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHH----HcCCCcEEEE
Confidence 13689999999754 5666677788899999999998621 1122222222221 1223568899
Q ss_pred EeCCCcCChH---HHHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 361 ANKIDEDGAE---EVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 361 lNKiDl~~~~---~~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+|+.+.+ +.++.+++.+ ...++|++||++|+|++.|++.|.+.++..
T Consensus 178 lNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 178 QNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred EecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 9999998643 2344444433 357899999999999999999999877644
No 236
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.47 E-value=1.8e-12 Score=120.31 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=95.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeC-----C--eeEEEEcCCCCcCCccccccchHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFD-----D--IQITVADIPGLIKGAHENRGLGHAFLR 308 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~-----~--~~i~l~DtpG~i~~a~~~~~l~~~fl~ 308 (423)
+|.++|.+++|||||++++.+...... +..| ..+.....+.++ + ..+.+|||+|..+ +......
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~-~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-------~~~l~~~ 73 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR-PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-------VKSTRAV 73 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-------HHHHHHH
Confidence 689999999999999999998644322 2222 112223344442 2 5689999999865 2223345
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc-----------------ccCCCCeEEEEeCCCcCChHH
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-----------------GLSDRPSLVVANKIDEDGAEE 371 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-----------------~l~~~P~IiVlNKiDl~~~~~ 371 (423)
++..++++++|+|+++ ..+++.+..|+.++..... .-.+.|+|||.||+|+.....
T Consensus 74 ~yr~ad~iIlVyDvtn-------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 74 FYNQVNGIILVHDLTN-------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HhCcCCEEEEEEECcC-------hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 6788999999999998 4778888888888765321 113579999999999965421
Q ss_pred --------HHHHHHHHcCCCcEEEEecccC
Q 014494 372 --------VYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 372 --------~~~~l~~~~~~~~ii~vSA~~g 393 (423)
....+.+.+ +.+.+.++++..
T Consensus 147 ~~~~~~~~~~~~ia~~~-~~~~i~~~c~~~ 175 (202)
T cd04102 147 SSGNLVLTARGFVAEQG-NAEEINLNCTNG 175 (202)
T ss_pred cchHHHhhHhhhHHHhc-CCceEEEecCCc
Confidence 122344444 567788888754
No 237
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=4.3e-13 Score=126.62 Aligned_cols=165 Identities=23% Similarity=0.262 Sum_probs=117.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
+|.|+|.+|||||||+|+|...... ++..+.+|-.++.-...+++..+++|||||+.++......+...+...+.+.|+
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DL 120 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDL 120 (296)
T ss_pred eEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccE
Confidence 6679999999999999999965443 333443443344445566678999999999998777666677788899999999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh------------H-------HHHHHH
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------------E-------EVYEEL 376 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------------~-------~~~~~l 376 (423)
++.++|+.++.- ..+...++.+... ..++|.|+++|.+|...+ . +..+.+
T Consensus 121 vL~l~~~~draL----~~d~~f~~dVi~~-------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 121 VLWLIKADDRAL----GTDEDFLRDVIIL-------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred EEEeccCCCccc----cCCHHHHHHHHHh-------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 999999987421 1223333333221 135999999999997643 0 112233
Q ss_pred HHHc-CCCcEEEEecccCcCHHHHHHHHHHHhccccC
Q 014494 377 ERRV-QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 377 ~~~~-~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
.+++ +-.|++.+|.....|++.|...+.+.++....
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 3333 44688999999999999999999999885544
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.47 E-value=7.5e-13 Score=137.84 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=95.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCC---------------------------------cccceecceEEEEEeCC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGH---------------------------------YSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~---------------------------------~~ftTl~~~~g~v~~~~ 281 (423)
..+|+++|+++||||||+.+|....-.+.. ....|++.....+..++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 348999999999999999999644211110 01245666666677777
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.++.++||||+.. +.......+..+|++++|+|+..... .+....+..+.. +..+|.|+|+
T Consensus 107 ~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~--------~qt~~~~~l~~~----lg~~~iIvvv 167 (474)
T PRK05124 107 RKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVL--------DQTRRHSFIATL----LGIKHLVVAV 167 (474)
T ss_pred cEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCcc--------ccchHHHHHHHH----hCCCceEEEE
Confidence 8999999999643 44455566788999999999976321 111111111111 1235788899
Q ss_pred eCCCcCCh-HH----HHHHHHHHc------CCCcEEEEecccCcCHHHHH
Q 014494 362 NKIDEDGA-EE----VYEELERRV------QGVPIYPVCAVLEEGVPELK 400 (423)
Q Consensus 362 NKiDl~~~-~~----~~~~l~~~~------~~~~ii~vSA~~g~gi~eL~ 400 (423)
||+|+... .+ +.+.+...+ ...++++|||++|.|++++.
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 99999742 22 222332211 24689999999999998653
No 239
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.46 E-value=1.9e-12 Score=121.02 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=72.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC----------Cc---------ccceecceEEEEEeC-----CeeEEEEcCCCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG----------HY---------SFTTLRPNLGNMNFD-----DIQITVADIPGL 292 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~----------~~---------~ftTl~~~~g~v~~~-----~~~i~l~DtpG~ 292 (423)
+|+++|+.++|||||+++|+.....+. .+ ...|.......+.+. ...+.++||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986422211 00 122333333333332 267899999998
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
.+ +.......+..+|++++|+|+++.. .. ....++..+.. ...|.++|+||+|+.
T Consensus 82 ~~-------f~~~~~~~~~~aD~~llVvD~~~~~-------~~-~~~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN-------FMDEVAAALRLSDGVVLVVDVVEGV-------TS-NTERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred cc-------hHHHHHHHHHhCCEEEEEEECCCCC-------CH-HHHHHHHHHHH-----cCCCEEEEEECcccC
Confidence 76 4445667788999999999998631 12 22223333221 258999999999975
No 240
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4e-13 Score=118.08 Aligned_cols=160 Identities=24% Similarity=0.291 Sum_probs=117.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-----CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-----AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-----~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
--.|.|+|+-||||||||.++-.... .......+|...+.|.+.+....+.+||.-|+.. +...|..+
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~-------lrSlw~~y 89 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES-------LRSLWKKY 89 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------HHHHHHHH
Confidence 34689999999999999998843211 1122335677778899999989999999999865 66778889
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHH------HHc--C
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELE------RRV--Q 381 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~------~~~--~ 381 (423)
+..|+.++++||+++. +.++.....+..+.. +..+...|.++.+||-|+.+..+. ++|. +.. +
T Consensus 90 Y~~~H~ii~viDa~~~-------eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~-~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDR-------ERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEA-AELDGVFGLAELIPRR 160 (197)
T ss_pred HHHhceeEEeecCCCH-------HHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhhH-HHHHHHhhhhhhcCCc
Confidence 9999999999999872 223322222222211 234568999999999999876432 2222 222 4
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+.++.+|||.+|+||++=+.++...+++.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 67899999999999999999999888776
No 241
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.45 E-value=2.1e-13 Score=114.86 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=73.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC----CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA----VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~----i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|.++|.+|||||||+++|.+.... .......+.......+..+...+.+||++|....... ....+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~~~ 73 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQFFLKK 73 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT-------SHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc-------ccchhhc
Confidence 5899999999999999999987544 1112222222222222222346889999998652211 1122788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
+|++++|+|+++. .++..+..+...+..+...-.+.|+|+|+||.|
T Consensus 74 ~d~~ilv~D~s~~-------~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 74 ADAVILVYDLSDP-------ESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SCEEEEEEECCGH-------HHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred CcEEEEEEcCCCh-------HHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999972 556666666555555543334699999999998
No 242
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.44 E-value=2.8e-12 Score=118.37 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=119.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.++|.+|+|||+|...+... ..+..|..|.-+.....+.+++ ..+.|+||+|..+ +...--.++..++
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~-~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~-------~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTG-RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE-------FSAMRDLYIRNGD 76 (196)
T ss_pred EEEEECCCCCCcchheeeeccc-ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc-------ChHHHHHhhccCc
Confidence 7899999999999999988764 3455577666666677777776 6778999999654 3333345678889
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
..+.|+++++ +.+++....++..+. -.+.....|+|+|+||+|+.... +.-+.+...+ ..+++.+||
T Consensus 77 gF~lVysitd-------~~SF~~~~~l~~~I~-r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~-~~~f~E~Sa 147 (196)
T KOG0395|consen 77 GFLLVYSITD-------RSSFEEAKQLREQIL-RVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSW-GCAFIETSA 147 (196)
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHH-HhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhc-CCcEEEeec
Confidence 9999999998 578888888888873 23344568999999999997632 2234444444 556999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+...++++++..|...+..
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887765
No 243
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.44 E-value=2.2e-12 Score=140.49 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=100.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCC---C---CCC------------cccceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKP---A---VGH------------YSFTTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~---~---i~~------------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
..+.+|+|+|++|+|||||+++|....- . +.+ ...+|++.....+.+.+..+.++||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3456999999999999999999964211 1 111 345777788888999999999999999976
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHH
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 372 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~ 372 (423)
+.......+..+|++++|+|+.... ..+...++..+.. .+.|.|+|+||+|+... ...
T Consensus 88 -------~~~~~~~~l~~~D~~ilVvda~~g~--------~~~~~~~~~~~~~-----~~~p~ivviNK~D~~~~~~~~~ 147 (689)
T TIGR00484 88 -------FTVEVERSLRVLDGAVAVLDAVGGV--------QPQSETVWRQANR-----YEVPRIAFVNKMDKTGANFLRV 147 (689)
T ss_pred -------hhHHHHHHHHHhCEEEEEEeCCCCC--------ChhHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHH
Confidence 3334567788899999999998631 1222333333332 26899999999999753 455
Q ss_pred HHHHHHHcCCC---cEEEEecccC
Q 014494 373 YEELERRVQGV---PIYPVCAVLE 393 (423)
Q Consensus 373 ~~~l~~~~~~~---~ii~vSA~~g 393 (423)
++.+++.+... .++++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 148 VNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHHhCCCceeEEeccccCCC
Confidence 67777766332 2677887655
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=4.6e-12 Score=133.32 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=80.1
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc---CCC---CC----------CCc------ccceecceEEEEEeCCeeEEEEcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR---AKP---AV----------GHY------SFTTLRPNLGNMNFDDIQITVADI 289 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg---~~~---~i----------~~~------~ftTl~~~~g~v~~~~~~i~l~Dt 289 (423)
.....+|+|||+++||||||+++|.. .-. .+ .++ ...|+......+.+.+..+.++||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 34456999999999999999999852 110 01 111 123344445567777899999999
Q ss_pred CCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 290 PGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 290 pG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
||+.. +.....+.+..+|++++|+|++.. ...+...++..+.. .+.|.|+++||+|+..
T Consensus 88 PG~~d-------f~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~-----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 88 PGHED-------FSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred CChhh-------HHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence 99854 444556778899999999999863 12233444433322 3689999999999853
No 245
>PRK00007 elongation factor G; Reviewed
Probab=99.44 E-value=2.5e-12 Score=139.97 Aligned_cols=116 Identities=19% Similarity=0.250 Sum_probs=85.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHH---cCCCCC---C------------CcccceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAIS---RAKPAV---G------------HYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Ls---g~~~~i---~------------~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
..+.+|+|+|.+|+|||||+++|. +..... . ....+|++.....+.+.+..+.++||||+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 345699999999999999999996 321111 1 2446788888888899999999999999865
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
+.......+..+|++++|+|+... ...+...++..+.. .+.|.|+++||+|+..
T Consensus 88 -------f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 -------FTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred -------HHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 333466778889999999998763 22333444444433 2689999999999864
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.5e-12 Score=130.64 Aligned_cols=163 Identities=21% Similarity=0.235 Sum_probs=121.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCC---------------CCCcccceecceEEEEEeCC---eeEEEEcCCCCcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPA---------------VGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIK 294 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~---------------i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~ 294 (423)
..+..+++|-+-.-|||||..+|....-. +....+.|+......+.|.+ ..+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45568899999999999999988543111 22344678888888888877 8899999999987
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHH
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 372 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~ 372 (423)
++....+.+..|+.+|+|||++.... ......+... +. .+...|.|+||+|++.+ +.+
T Consensus 138 -------Fs~EVsRslaac~G~lLvVDA~qGvq-------AQT~anf~lA---fe---~~L~iIpVlNKIDlp~adpe~V 197 (650)
T KOG0462|consen 138 -------FSGEVSRSLAACDGALLVVDASQGVQ-------AQTVANFYLA---FE---AGLAIIPVLNKIDLPSADPERV 197 (650)
T ss_pred -------ccceehehhhhcCceEEEEEcCcCch-------HHHHHHHHHH---HH---cCCeEEEeeeccCCCCCCHHHH
Confidence 44445677888999999999997311 1222222222 22 26788999999999865 567
Q ss_pred HHHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhccccCCcC
Q 014494 373 YEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERL 415 (423)
Q Consensus 373 ~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~~~~ 415 (423)
...+.+.| +..+++.+||++|.|+++|+++|.+.++..+...-
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d 242 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRD 242 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCC
Confidence 77788877 55689999999999999999999999986654433
No 247
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=113.01 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=109.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
++.+||.+-+||||||+.++..+..--.-|...++...+.+.+.+ .++.+|||+|+.+ +......+++++
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqer-------frsitksyyrns 82 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-------FRSITKSYYRNS 82 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH-------HHHHHHHHhhcc
Confidence 567899999999999999997654322222222222222233332 6789999999977 444445778888
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ii~vS 389 (423)
-.+++|+|+++ +.+++....|+.|...+..+-...-..+|..|+|+....+ ..+.+.... +..++.+|
T Consensus 83 vgvllvyditn-------r~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~h-gM~FVETS 154 (213)
T KOG0091|consen 83 VGVLLVYDITN-------RESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASH-GMAFVETS 154 (213)
T ss_pred cceEEEEeccc-------hhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhc-CceEEEec
Confidence 89999999998 5788999999888654432222222345569999986542 344555554 78999999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|+++.|+++-++.|.+.+.
T Consensus 155 ak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred ccCCCcHHHHHHHHHHHHH
Confidence 9999999998887766543
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.42 E-value=3.3e-12 Score=118.69 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=78.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC----CeeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~----~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
+.|.|+|++|||||||+++|....... .++ +..++...+... +..+.+|||||+.+ +...+..++.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~~--s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TVT--SIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLETLK 70 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-ccC--cEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHHHHh
Confidence 478999999999999999999864322 222 223444444443 47899999999876 5566677788
Q ss_pred cc-ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhh-cccCCCCeEEEEeCCCcCCh
Q 014494 312 RT-KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ-EGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 312 ~a-d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~-~~l~~~P~IiVlNKiDl~~~ 369 (423)
.+ +.+|+|+|++... ........++..+.... ..-...|+++|+||+|+...
T Consensus 71 ~~~~~vV~VvD~~~~~------~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 71 NSAKGIVFVVDSATFQ------KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ccCCEEEEEEECccch------hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 88 9999999998721 12233333332221111 11137899999999998643
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.41 E-value=2.4e-12 Score=133.16 Aligned_cols=149 Identities=20% Similarity=0.212 Sum_probs=97.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-------------------------CC------CcccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-------------------------VG------HYSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-------------------------i~------~~~ftTl~~~~g~v~~~~~~i~ 285 (423)
+|+++|+.++|||||+.+|+..--. +. .....|.+.....+.+++..+.
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~ 88 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFT 88 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEE
Confidence 7999999999999999998642100 00 1224567776677777788999
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKI 364 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKi 364 (423)
|+||||+.+ +.......+..+|.+++|+|+........ .....+....+..+.. ...| .|+++||+
T Consensus 89 lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~-~~~~~qT~eh~~~~~~-----~gi~~iiv~vNKm 155 (446)
T PTZ00141 89 IIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAG-ISKDGQTREHALLAFT-----LGVKQMIVCINKM 155 (446)
T ss_pred EEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecc-cCCCccHHHHHHHHHH-----cCCCeEEEEEEcc
Confidence 999999765 55666777888999999999986321000 0001223333332322 2566 46889999
Q ss_pred CcCC---h----HHHHHHHHHHc-------CCCcEEEEecccCcCHHH
Q 014494 365 DEDG---A----EEVYEELERRV-------QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 365 Dl~~---~----~~~~~~l~~~~-------~~~~ii~vSA~~g~gi~e 398 (423)
|... . +++.+.+++.+ ...++|++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9532 1 23344444433 146799999999999964
No 250
>PRK13351 elongation factor G; Reviewed
Probab=99.41 E-value=3.9e-12 Score=138.62 Aligned_cols=116 Identities=24% Similarity=0.321 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCC------------CCC------cccceecceEEEEEeCCeeEEEEcCCCCcCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPA------------VGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKG 295 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~------------i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~ 295 (423)
...+|+++|+.|+|||||+++|...... ..+ ....|+......+.+.+..+.++||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d- 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID- 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH-
Confidence 3458999999999999999999743110 111 123355555667788889999999999865
Q ss_pred ccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 296 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 296 a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
+.......+..+|++++|+|++... . .+...++..+.. .+.|.++|+||+|+...
T Consensus 86 ------f~~~~~~~l~~aD~~ilVvd~~~~~-------~-~~~~~~~~~~~~-----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 ------FTGEVERSLRVLDGAVVVFDAVTGV-------Q-PQTETVWRQADR-----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ------HHHHHHHHHHhCCEEEEEEeCCCCC-------C-HHHHHHHHHHHh-----cCCCEEEEEECCCCCCC
Confidence 4445567788999999999998731 1 222333343332 26899999999998754
No 251
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=1.1e-11 Score=116.72 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=74.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC----------------CcccceecceEEEEEeC----------CeeEEEEcCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG----------------HYSFTTLRPNLGNMNFD----------DIQITVADIP 290 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~----------------~~~ftTl~~~~g~v~~~----------~~~i~l~Dtp 290 (423)
.|+++|+.++|||||+.+|....-.+. .....|+....-.+.+. +..+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999975321110 01123333333333443 4778999999
Q ss_pred CCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 291 GLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 291 G~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
|+.+ +.......+..+|++++|+|+.... ..+...++..+.. ...|.|+|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~--------~~~t~~~l~~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGV--------CVQTETVLRQALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCC--------CHHHHHHHHHHHH-----cCCCEEEEEECCCcc
Confidence 9976 5556677889999999999998731 2222333333322 257999999999986
No 252
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.7e-12 Score=107.08 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=113.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
++..+|..+|||||+|..|.-..+.. ...|+..++..+.+.+..|.+||..|... +...|..++..+..+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~kfNvwdvGGqd~-------iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDK-------IRPLWRHYYTGTQGL 88 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeeeEEeeeeccCchh-------hhHHHHhhccCCceE
Confidence 68889999999999999997653321 12345566778899999999999999865 666677788889999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhh--hcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-------CCCcEEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHH--QEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYP 387 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~--~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~-------~~~~ii~ 387 (423)
|||+|.++. +.++...+||... .+.+.+.|.+|.+||-|++++.. .+++++.+ ..+.+.+
T Consensus 89 IFV~Dsa~~----------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~vqp 157 (180)
T KOG0071|consen 89 IFVVDSADR----------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWYVQP 157 (180)
T ss_pred EEEEeccch----------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccEeec
Confidence 999999862 4445555666544 24566788889999999987632 12222222 3466889
Q ss_pred EecccCcCHHHHHHHHHHHhcc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+||.+|.|+.+=+.++.+.++.
T Consensus 158 ~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred cccccchhHHHHHHHHHhhccC
Confidence 9999999999999998877653
No 253
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.39 E-value=1.6e-11 Score=114.56 Aligned_cols=158 Identities=20% Similarity=0.137 Sum_probs=106.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC---CeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~---~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+++|..|||||||+++|.+...... |+.|......+..... ...+.+|||+|+.+ +...+..+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-------~~~~~~~y~~~ 77 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG-YPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-------YRSLRPEYYRG 77 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCccc-CCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH-------HHHHHHHHhcC
Confidence 4799999999999999999998644332 2222222222322222 25689999999976 44455567788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHH-------------HHH
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEEL-------------ERR 379 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l-------------~~~ 379 (423)
++.+++|+|.... ....+....|..++..... ...|+++|.||+|+.........+ ...
T Consensus 78 ~~~~l~~~d~~~~------~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 78 ANGILIVYDSTLR------ESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred CCEEEEEEecccc------hhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 9999999999862 2345555666666654432 368999999999998753211111 110
Q ss_pred ---c--CCCcEEEEecc--cCcCHHHHHHHHHHHhcc
Q 014494 380 ---V--QGVPIYPVCAV--LEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 380 ---~--~~~~ii~vSA~--~g~gi~eL~~~i~~~l~~ 409 (423)
. ....++.+|++ .+.++.+++..+...+..
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 0 12348999999 999999998888777643
No 254
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=2.2e-11 Score=108.49 Aligned_cols=152 Identities=21% Similarity=0.245 Sum_probs=112.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-------CCCcc---cceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-------VGHYS---FTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-------i~~~~---ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
.+|+++|+-+|||||++++++...+. ...+- .||+....|.+.+.+ ..+.++||||+.+ +..
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------F~f 83 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------FKF 83 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH-------HHH
Confidence 48999999999999999999976431 12222 378888889988887 8999999999987 555
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcC
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQ 381 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~ 381 (423)
.|--..+.+..+++++|.+.+. .. ....++..+.... ..|.+|.+||.|+.+. +.+.+.+...+.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~-------~~-~a~~ii~f~~~~~----~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~ 151 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPI-------TF-HAEEIIDFLTSRN----PIPVVVAINKQDLFDALPPEKIREALKLELL 151 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCc-------ch-HHHHHHHHHhhcc----CCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence 5555677899999999999842 22 3344444444321 2899999999999865 333444443324
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHH
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
..++|.++|..+++..+.++.+...
T Consensus 152 ~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 152 SVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCceeeeecccchhHHHHHHHHHhh
Confidence 7899999999999998887776654
No 255
>PLN00023 GTP-binding protein; Provisional
Probab=99.38 E-value=4.8e-12 Score=124.08 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=83.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC---------------CeeEEEEcCCCCcCCccccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---------------DIQITVADIPGLIKGAHENR 300 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~---------------~~~i~l~DtpG~i~~a~~~~ 300 (423)
.+|+|+|..|+|||||++++.+........+....+.....+.++ ...+.||||+|...
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr------ 95 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER------ 95 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh------
Confidence 379999999999999999999764322211111122223344443 15689999999865
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc----------ccCCCCeEEEEeCCCcCCh
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE----------GLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~----------~l~~~P~IiVlNKiDl~~~ 369 (423)
+......++..++++|+|+|+++ ..++..+..|+.++..... ...+.|+|||+||+|+...
T Consensus 96 -frsL~~~yyr~AdgiILVyDITd-------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 -YKDCRSLFYSQINGVIFVHDLSQ-------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred -hhhhhHHhccCCCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 22333456788999999999998 4678888888888876521 1135799999999999643
No 256
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=110.27 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 240 LVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 240 LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
|+|.+++|||+||-+.-......++...| .++.....+..++ .++.+|||.|+.+ +..-...+++.+|.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqer-------frsvt~ayyrda~al 74 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQER-------FRSVTHAYYRDADAL 74 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHH-------HhhhhHhhhccccee
Confidence 68999999999976554321111221111 1222233445555 6789999999987 333344678899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEeccc
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
++++|+.+ ..+++..+.|+.++..|... .....++.||+|+.... +.-+.|.+.+ +.|+..+||++
T Consensus 75 lllydian-------kasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~er~v~~ddg~kla~~y-~ipfmetsakt 144 (192)
T KOG0083|consen 75 LLLYDIAN-------KASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAHERAVKRDDGEKLAEAY-GIPFMETSAKT 144 (192)
T ss_pred eeeeeccc-------chhHHHHHHHHHHHHHHHHh--hHhHhhhccccccchhhccccchHHHHHHHH-CCCceeccccc
Confidence 99999998 57899999999999998653 45667788999996532 3345666666 68999999999
Q ss_pred CcCHHHHHHHHHHHhcccc
Q 014494 393 EEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 393 g~gi~eL~~~i~~~l~~~~ 411 (423)
|.|++.-+-.|.+.+.+.+
T Consensus 145 g~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 145 GFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred cccHhHHHHHHHHHHHHhc
Confidence 9999998888877766543
No 257
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.35 E-value=2.3e-11 Score=121.46 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=109.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcC----CCC------------CCCccc---ceecceE---EEEEeC---C--eeEEEEcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA----KPA------------VGHYSF---TTLRPNL---GNMNFD---D--IQITVADI 289 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~----~~~------------i~~~~f---tTl~~~~---g~v~~~---~--~~i~l~Dt 289 (423)
.||+||+.|+|||||+|++++. ... +.+.++ ||.+|.. ..+.+. + .++.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 7899999999999999999987 222 345566 8888876 444332 1 68999999
Q ss_pred CCCcCCccccccchHH----------------------HHHHHh-ccceeEEEE-ecCCCCCCCCCCCcHHHHHHHHHHH
Q 014494 290 PGLIKGAHENRGLGHA----------------------FLRHIE-RTKVLAYVV-DLASGLDGRKGIKPWKQLRDLIIEL 345 (423)
Q Consensus 290 pG~i~~a~~~~~l~~~----------------------fl~~i~-~ad~ll~Vv-D~s~~~~~~~~~~~~~~~~~l~~eL 345 (423)
+|+......+.--... ..+.+. .+++.++|. |.+-. ..+.....+.-..+..+|
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~--dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTIT--DIPREDYVEAEERVIEEL 176 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcc--ccccccchHHHHHHHHHH
Confidence 9997643322111111 234455 788888888 77521 011123445566777888
Q ss_pred HhhhcccCCCCeEEEEeCCCcCC--hHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhccccC
Q 014494 346 EHHQEGLSDRPSLVVANKIDEDG--AEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 346 ~~~~~~l~~~P~IiVlNKiDl~~--~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+.. ++|.|+|+||+|... ..+..+.+.+.+ +.+++++|+..-. -+++..-+.+.|.+.+-
T Consensus 177 k~~-----~kPfiivlN~~dp~~~et~~l~~~l~eky-~vpvl~v~c~~l~-~~DI~~il~~vL~EFPv 238 (492)
T TIGR02836 177 KEL-----NKPFIILLNSTHPYHPETEALRQELEEKY-DVPVLAMDVESMR-ESDILSVLEEVLYEFPI 238 (492)
T ss_pred Hhc-----CCCEEEEEECcCCCCchhHHHHHHHHHHh-CCceEEEEHHHcC-HHHHHHHHHHHHhcCCc
Confidence 764 899999999999543 234455676666 4788999986432 55566666666655543
No 258
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=124.87 Aligned_cols=154 Identities=27% Similarity=0.330 Sum_probs=108.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
...|.|-++|+-.-||||||.+|-+........-+.|...-.-.+.++ +.+++|+||||+.. +...-.+-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-------F~aMRaRGA~ 223 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-------FSAMRARGAN 223 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHH-------HHHHHhccCc
Confidence 467899999999999999999999887666555556654444445554 48999999999864 2223333445
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHH------c-CC
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERR------V-QG 382 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~------~-~~ 382 (423)
-+|++++|+.+.+... .+....+...+. ++.|+|+.+||||.+.. +..+.+|... + .+
T Consensus 224 vtDIvVLVVAadDGVm--------pQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVM--------PQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred cccEEEEEEEccCCcc--------HhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCc
Confidence 5799999999887432 222222222111 48999999999999865 3444444332 1 46
Q ss_pred CcEEEEecccCcCHHHHHHHHHHH
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.++++|||++|+|++.|.+.+.-+
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHH
Confidence 789999999999999998877644
No 259
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.6e-11 Score=125.60 Aligned_cols=153 Identities=28% Similarity=0.276 Sum_probs=108.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC---CeeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~---~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
.|.|.++|+--.||||||..|-+........-..|.+...-.+.++ ...++|+||||+.. +...-.+-..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-------Ft~mRaRGa~ 77 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-------FTAMRARGAS 77 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH-------HHHHHhcCCc
Confidence 4689999999999999999998887766665566655555555553 36899999999864 2222223345
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHH------c-CC
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERR------V-QG 382 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~------~-~~ 382 (423)
-||++++|+|+.+... .+...-++.++. .+.|+|+.+||+|.++.+ ....++.+. + ..
T Consensus 78 vtDIaILVVa~dDGv~--------pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 78 VTDIAILVVAADDGVM--------PQTIEAINHAKA-----AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred cccEEEEEEEccCCcc--------hhHHHHHHHHHH-----CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCc
Confidence 6899999999998543 222222233333 389999999999998653 334444432 2 34
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHh
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
..++++||++|+|+++|+..|.-+-
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHH
Confidence 6799999999999999998876543
No 260
>PRK13768 GTPase; Provisional
Probab=99.34 E-value=9.9e-12 Score=119.36 Aligned_cols=118 Identities=24% Similarity=0.302 Sum_probs=79.0
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHhc--cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIER--TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
.++++||||.++.... ..+...+.+++.+ ++++++|+|++... .+.......+..+.. ....+.|.|+|
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~------~~~d~~~~~~l~~~~--~~~~~~~~i~v 168 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAK------TPSDFVSLLLLALSV--QLRLGLPQIPV 168 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhC------CHHHHHHHHHHHHHH--HHHcCCCEEEE
Confidence 6899999998875433 4567778888877 89999999997631 222211111111111 01137999999
Q ss_pred EeCCCcCChHHH---HHHH----------------------------HHHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 361 ANKIDEDGAEEV---YEEL----------------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 361 lNKiDl~~~~~~---~~~l----------------------------~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+||+|+....+. .+.+ .+..+..+++++||++++|+++|+++|.+.+..
T Consensus 169 ~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 169 LNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred EEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 999999865322 1111 122233589999999999999999999998853
No 261
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=5.1e-12 Score=109.36 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=108.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecc--eEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRP--NLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~--~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
.+|.|+|.--+|||||+-+....+.. ....+|+.. ....+.+.+ ..+.||||+|+.+....+. -+++
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-------IYYR 84 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-------IYYR 84 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-------eEEe
Confidence 37899999999999998887654332 122233322 223445555 5789999999987433221 2467
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----HHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----EELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----~~l~~~~~~~~ii~ 387 (423)
.++..++|+|+++ ++++...+.|..+|..... .....+||.||+|+.....+. +...+. -+..++.
T Consensus 85 gSnGalLVyDITD-------rdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAes-vGA~y~e 154 (218)
T KOG0088|consen 85 GSNGALLVYDITD-------RDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAES-VGALYME 154 (218)
T ss_pred CCCceEEEEeccc-------hHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHh-hchhhee
Confidence 8899999999998 5888888999988876532 246678888999997654322 222222 2567899
Q ss_pred EecccCcCHHHHHHHHHHHhc
Q 014494 388 VCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+||+.+.||.+|+..+...+-
T Consensus 155 TSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 155 TSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred cccccccCHHHHHHHHHHHHH
Confidence 999999999999988876553
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.31 E-value=2.3e-11 Score=125.77 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=95.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-------------------------C------CCcccceecceEEEEEeCCeeE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-------------------------V------GHYSFTTLRPNLGNMNFDDIQI 284 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-------------------------i------~~~~ftTl~~~~g~v~~~~~~i 284 (423)
-.|+++|+.++|||||+-+|+...-. + ......|++.....+..++..+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 37999999999999999888531100 0 0011356666666666777899
Q ss_pred EEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeC
Q 014494 285 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANK 363 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNK 363 (423)
.++||||+.+ +.......+..+|..++|+|+....-. .+.....+....+..+.. ...| .|+++||
T Consensus 88 ~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e-~g~~~~~qT~eh~~~~~~-----~gi~~iIV~vNK 154 (447)
T PLN00043 88 TVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTGGFE-AGISKDGQTREHALLAFT-----LGVKQMICCCNK 154 (447)
T ss_pred EEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccCcee-cccCCCchHHHHHHHHHH-----cCCCcEEEEEEc
Confidence 9999999866 555566778889999999999862100 000111233333222211 2454 5778899
Q ss_pred CCcCCh-------HHHHHHHHHHc-------CCCcEEEEecccCcCHHH
Q 014494 364 IDEDGA-------EEVYEELERRV-------QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 364 iDl~~~-------~~~~~~l~~~~-------~~~~ii~vSA~~g~gi~e 398 (423)
+|+... +++.++++..+ ...+++++||++|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 998621 12344444433 136799999999999853
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=5.2e-11 Score=129.54 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=75.9
Q ss_pred ECCCCCcHHHHHHHHHcCC---CCC---------CC------cccceecceEEEEEeCCeeEEEEcCCCCcCCccccccc
Q 014494 241 VGMPSAGKSTLLGAISRAK---PAV---------GH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL 302 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~---~~i---------~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l 302 (423)
||++|+|||||+++|.... ... .+ ....|+......+.+.+..+.++||||+.+ +
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------~ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------F 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH-------H
Confidence 6999999999999994321 111 11 123455566677888889999999999865 4
Q ss_pred hHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 303 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 303 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
.......+..+|++++|+|++.. .. .+...++..+.. .+.|.++|+||+|+..
T Consensus 74 ~~~~~~~l~~aD~vllvvd~~~~-------~~-~~~~~~~~~~~~-----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 74 TGEVERALRVLDGAVVVVCAVGG-------VE-PQTETVWRQAEK-----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCC-------cC-HHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 44566778899999999999863 11 222333333322 3689999999999874
No 264
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.29 E-value=6.5e-11 Score=111.74 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=84.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCC--CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPA--VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~--i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
.....|+++|++|+|||||+++|.+.... +.....+ .-.+...+.++.++||||.+ ...+..+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~~a 101 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMIDIA 101 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH----------HHHHHHH
Confidence 34558999999999999999999875211 1111111 11122346789999999853 2445667
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE-EEeCCCcCChH----HHHHHHHH-----Hc
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV-VANKIDEDGAE----EVYEELER-----RV 380 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii-VlNKiDl~~~~----~~~~~l~~-----~~ 380 (423)
+.+|++++|+|++.... .....++..+... ..|.++ |+||+|+.... +..+.|++ .+
T Consensus 102 k~aDvVllviDa~~~~~--------~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~ 168 (225)
T cd01882 102 KVADLVLLLIDASFGFE--------METFEFLNILQVH-----GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY 168 (225)
T ss_pred HhcCEEEEEEecCcCCC--------HHHHHHHHHHHHc-----CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 88999999999976321 1223333333321 567655 99999996432 22333333 33
Q ss_pred CCCcEEEEecccC
Q 014494 381 QGVPIYPVCAVLE 393 (423)
Q Consensus 381 ~~~~ii~vSA~~g 393 (423)
++.+++++||++.
T Consensus 169 ~~~ki~~iSa~~~ 181 (225)
T cd01882 169 QGAKLFYLSGIVH 181 (225)
T ss_pred CCCcEEEEeeccC
Confidence 6789999999876
No 265
>PTZ00099 rab6; Provisional
Probab=99.29 E-value=8.5e-11 Score=106.75 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=85.4
Q ss_pred EEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhccc
Q 014494 275 GNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGL 352 (423)
Q Consensus 275 g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l 352 (423)
..+.+++ ..+.||||||..+.. .....+++.||++|+|+|+++ ..+++....|+.++.... .
T Consensus 20 ~~~~~~~~~v~l~iwDt~G~e~~~-------~~~~~~~~~ad~~ilv~D~t~-------~~sf~~~~~w~~~i~~~~--~ 83 (176)
T PTZ00099 20 KTLYLDEGPVRLQLWDTAGQERFR-------SLIPSYIRDSAAAIVVYDITN-------RQSFENTTKWIQDILNER--G 83 (176)
T ss_pred EEEEECCEEEEEEEEECCChHHhh-------hccHHHhCCCcEEEEEEECCC-------HHHHHHHHHHHHHHHHhc--C
Confidence 3455555 678999999986522 223456789999999999987 356777777777665432 2
Q ss_pred CCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 353 SDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 353 ~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
...|+|+|+||+|+.... +....+...+ +..++++||+++.|+++++++|.+.+.+.+
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~-~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEY-NTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 367889999999996421 1122233333 457899999999999999999999887644
No 266
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4e-11 Score=101.90 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
-+.+..+||.-|+|||+||..++..+. .++.|.| .+....+.+.+.+ .++.+|||.|+.+ +..-...++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf-madcphtigvefgtriievsgqkiklqiwdtagqer-------fravtrsyy 81 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYY 81 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH-hhcCCcccceecceeEEEecCcEEEEEEeecccHHH-------HHHHHHHHh
Confidence 345778999999999999999987532 2333322 1233345566666 6789999999876 444445678
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCC--CCeEEEEeCCCcCChHH----HHHHHHHHcCCCc
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD--RPSLVVANKIDEDGAEE----VYEELERRVQGVP 384 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~--~P~IiVlNKiDl~~~~~----~~~~l~~~~~~~~ 384 (423)
+.+...+.|+|+.. +.....+..|+..... |.+ ..++++.||.|+..... ..+.+.+. .+..
T Consensus 82 rgaagalmvyditr-------rstynhlsswl~dar~----ltnpnt~i~lignkadle~qrdv~yeeak~faee-ngl~ 149 (215)
T KOG0097|consen 82 RGAAGALMVYDITR-------RSTYNHLSSWLTDARN----LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEE-NGLM 149 (215)
T ss_pred ccccceeEEEEehh-------hhhhhhHHHHHhhhhc----cCCCceEEEEecchhhhhhcccCcHHHHHHHHhh-cCeE
Confidence 88889999999987 3556666666655432 333 34455559999976532 23344444 3678
Q ss_pred EEEEecccCcCHHHH-HHHHHHHhccccC
Q 014494 385 IYPVCAVLEEGVPEL-KVGLRMLVNGEKS 412 (423)
Q Consensus 385 ii~vSA~~g~gi~eL-~~~i~~~l~~~~~ 412 (423)
++.+||++|+++++- ++...++.+....
T Consensus 150 fle~saktg~nvedafle~akkiyqniqd 178 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETAKKIYQNIQD 178 (215)
T ss_pred EEEecccccCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999875 4444444444333
No 267
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.29 E-value=3.7e-11 Score=115.01 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=82.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc---ccchHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN---RGLGHAFLR 308 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~---~~l~~~fl~ 308 (423)
....+|+|+|.+|||||||+|+|.+... .+..+..+|..........++..+.++||||+.+..... ........+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4445899999999999999999999764 456676777777777777778899999999998753211 111111223
Q ss_pred HHh--ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh-hhcccCCCCeEEEEeCCCcCC
Q 014494 309 HIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 309 ~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IiVlNKiDl~~ 368 (423)
+++ ..+++++|..++... .... ...++..+.. +... ...+.++|+||+|...
T Consensus 109 ~l~~~~idvIL~V~rlD~~r------~~~~-d~~llk~I~e~fG~~-i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYR------RDYL-DLPLLRAITDSFGPS-IWRNAIVVLTHAASSP 163 (249)
T ss_pred HHhccCCCEEEEEEcCCCCC------CCHH-HHHHHHHHHHHhChh-hHhCEEEEEeCCccCC
Confidence 333 457888887665421 1111 1233333332 2211 2368999999999863
No 268
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.8e-11 Score=106.14 Aligned_cols=153 Identities=19% Similarity=0.253 Sum_probs=100.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-----------eeEEEEcCCCCcCCccccccchHHH
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----------IQITVADIPGLIKGAHENRGLGHAF 306 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-----------~~i~l~DtpG~i~~a~~~~~l~~~f 306 (423)
...+|.+|+||||+|-..+..+....-+....++.....+.++. ..+.+|||+|+.+..+ |..
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS----LTT-- 85 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS----LTT-- 85 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH----HHH--
Confidence 34579999999999988876532211110011222222233321 4688999999987332 222
Q ss_pred HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE-EeCCCcCChHH----HHHHHHHHcC
Q 014494 307 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV-ANKIDEDGAEE----VYEELERRVQ 381 (423)
Q Consensus 307 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV-lNKiDl~~~~~----~~~~l~~~~~ 381 (423)
..++.|-..++++|+++ ..++-..+.|+.+|... +....|.||+ .||+|+.+... ....|.+.+
T Consensus 86 -AFfRDAMGFlLiFDlT~-------eqSFLnvrnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky- 154 (219)
T KOG0081|consen 86 -AFFRDAMGFLLIFDLTS-------EQSFLNVRNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY- 154 (219)
T ss_pred -HHHHhhccceEEEeccc-------hHHHHHHHHHHHHHHHh--hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh-
Confidence 34566778899999987 46778888888888654 2345666555 59999987643 344566666
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+.|+|.+||-+|.|+++-++.+..++
T Consensus 155 glPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 155 GLPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred CCCeeeeccccCcCHHHHHHHHHHHH
Confidence 78999999999999987655554443
No 269
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=6.8e-11 Score=118.62 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=115.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC---------------CCCCcccceecceEEEEEeCC-----eeEEEEcCCC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP---------------AVGHYSFTTLRPNLGNMNFDD-----IQITVADIPG 291 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~---------------~i~~~~ftTl~~~~g~v~~~~-----~~i~l~DtpG 291 (423)
.+.+....+|-+-.-|||||-.+|....- .+....+.|+..+.-.+.|.. +.+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556788888889999999999854311 123344667766666655542 6789999999
Q ss_pred CcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--
Q 014494 292 LIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-- 369 (423)
Q Consensus 292 ~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-- 369 (423)
+.+... ...+.+..|...++|+|++.... ...+..+...+ . .+.-+|-|+||+|++.+
T Consensus 86 HVDFsY-------EVSRSLAACEGalLvVDAsQGve-------AQTlAN~YlAl---e---~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 86 HVDFSY-------EVSRSLAACEGALLVVDASQGVE-------AQTLANVYLAL---E---NNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred ccceEE-------EehhhHhhCCCcEEEEECccchH-------HHHHHHHHHHH---H---cCcEEEEeeecccCCCCCH
Confidence 998444 34577888999999999997422 12222222222 1 25677889999999865
Q ss_pred HHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhccccCC
Q 014494 370 EEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSE 413 (423)
Q Consensus 370 ~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~~ 413 (423)
+...+++.+.+ +....+.+||++|.||+++++.|.+.++.....
T Consensus 146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 45667777776 445689999999999999999999999876543
No 270
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.25 E-value=7.4e-11 Score=116.14 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=64.0
Q ss_pred CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 281 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 281 ~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..++|+||+|... .-...++.+|.++++.+... ..++..+ ...+..+|.++|
T Consensus 126 g~D~viidT~G~~~----------~e~~i~~~aD~i~vv~~~~~----------~~el~~~-------~~~l~~~~~ivv 178 (300)
T TIGR00750 126 GYDVIIVETVGVGQ----------SEVDIANMADTFVVVTIPGT----------GDDLQGI-------KAGLMEIADIYV 178 (300)
T ss_pred CCCEEEEeCCCCch----------hhhHHHHhhceEEEEecCCc----------cHHHHHH-------HHHHhhhccEEE
Confidence 36788999998642 11234556777777644322 2222222 223457899999
Q ss_pred EeCCCcCChHHHH---H----HHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 361 ANKIDEDGAEEVY---E----ELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 361 lNKiDl~~~~~~~---~----~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+||+|+....... . .+.... ...++++|||++++|+++|+++|.+.+.
T Consensus 179 ~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 179 VNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 9999998654211 0 112111 1236999999999999999999988755
No 271
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6e-11 Score=113.87 Aligned_cols=165 Identities=20% Similarity=0.238 Sum_probs=107.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC------------CCcccceec-----------ceEEEEEeCC------eeEEEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV------------GHYSFTTLR-----------PNLGNMNFDD------IQITVA 287 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i------------~~~~ftTl~-----------~~~g~v~~~~------~~i~l~ 287 (423)
.||+||+-.-|||||.++|+|..... -.|.-+++. .........+ +.+.|+
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfV 91 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFV 91 (415)
T ss_pred EeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEe
Confidence 79999999999999999999852110 001100000 0000011111 578999
Q ss_pred cCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 288 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 288 DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
|.||+.- |...+++-..--|..++|+.+..++.+++. .+.+ ..|.- +--+.+|||-||+|+.
T Consensus 92 DaPGHe~-------LMATMLsGAAlMDgAlLvIaANEpcPQPQT---~EHl----~AleI----igik~iiIvQNKIDlV 153 (415)
T COG5257 92 DAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQT---REHL----MALEI----IGIKNIIIVQNKIDLV 153 (415)
T ss_pred eCCchHH-------HHHHHhcchhhhcceEEEEecCCCCCCCch---HHHH----HHHhh----hccceEEEEeccccee
Confidence 9999864 555566665666889999999886543322 2222 12211 1246677777999999
Q ss_pred ChHH---HHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccccCCcCCccc
Q 014494 368 GAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERLSLDK 419 (423)
Q Consensus 368 ~~~~---~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~ 419 (423)
+.++ .+++++++. .+.++++|||..+.||+.|++.|.+.++...........
T Consensus 154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~ 213 (415)
T COG5257 154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPR 213 (415)
T ss_pred cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCce
Confidence 8764 455666655 457999999999999999999999999876655444333
No 272
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.3e-11 Score=104.60 Aligned_cols=153 Identities=21% Similarity=0.299 Sum_probs=107.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
...++.++|.-|||||||+++|-..+..+ ...|++|++..+.+.+.+++..|.-|+.. ....+..++..+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~m~ftt~DLGGH~q-------Arr~wkdyf~~v 88 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGGMTFTTFDLGGHLQ-------ARRVWKDYFPQV 88 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecCceEEEEccccHHH-------HHHHHHHHHhhh
Confidence 34588999999999999999997764332 23478999999999999999999999765 445577888999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhh--hcccCCCCeEEEEeCCCcCChH--HHHH---HHHHHc------
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH--QEGLSDRPSLVVANKIDEDGAE--EVYE---ELERRV------ 380 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~--~~~l~~~P~IiVlNKiDl~~~~--~~~~---~l~~~~------ 380 (423)
+.+++++|+.+. +.+.....++..+ ..++.+.|.+|..||+|.+.+. +.+. .+.+..
T Consensus 89 ~~iv~lvda~d~----------er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 89 DAIVYLVDAYDQ----------ERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred ceeEeeeehhhH----------HHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccc
Confidence 999999999872 2222223333222 2356789999999999998652 1111 111111
Q ss_pred -------CCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 381 -------QGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 381 -------~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
....++.||...+.+.-+-+.++..+
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11357888988888866666665544
No 273
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=1.9e-10 Score=114.11 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=68.3
Q ss_pred CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 281 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 281 ~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..++|+||+|...... .....||++++|++... ...++.+.. .......|+|
T Consensus 148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~----------gd~iq~~k~-------gi~E~aDIiV 200 (332)
T PRK09435 148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGA----------GDELQGIKK-------GIMELADLIV 200 (332)
T ss_pred CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCc----------hHHHHHHHh-------hhhhhhheEE
Confidence 36789999999874221 13566999999976332 122322222 1123445999
Q ss_pred EeCCCcCChH---HHHHHHHHHcC---------CCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 361 ANKIDEDGAE---EVYEELERRVQ---------GVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 361 lNKiDl~~~~---~~~~~l~~~~~---------~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+|+.... .....+...+. ..+++++||+++.|+++|++.|.++++..
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999987542 33344444331 25899999999999999999999987644
No 274
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.22 E-value=1.4e-11 Score=119.18 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=45.5
Q ss_pred ccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 351 GLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 351 ~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+...+.++|+||+|+... +...+.+++..+..+++++||++++|+++|+++|.+.
T Consensus 227 ~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 227 HMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred chhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3456888999999999752 2345566677788899999999999999999999764
No 275
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.2e-10 Score=116.38 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=114.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.|+..|+---|||||++++++.... -....++|.+........++..+.++|.||+.+ +...++..+.-.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~-------~i~~miag~~~~ 74 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD-------FISNLLAGLGGI 74 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH-------HHHHHHhhhcCC
Confidence 4788899999999999999987433 344667898888888888889999999999876 666677777788
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe-EEEEeCCCcCChHHHHHHHHHH-----cCCCcEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-LVVANKIDEDGAEEVYEELERR-----VQGVPIYP 387 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-IiVlNKiDl~~~~~~~~~l~~~-----~~~~~ii~ 387 (423)
|..++|||+.+..+ .+....+.-|. +...+. |+|+||+|..+...+.+.+++. +.+.+++.
T Consensus 75 d~alLvV~~deGl~--------~qtgEhL~iLd-----llgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 75 DYALLVVAADEGLM--------AQTGEHLLILD-----LLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred ceEEEEEeCccCcc--------hhhHHHHHHHH-----hcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 99999999976433 22222222222 235555 9999999999764332222222 25678899
Q ss_pred EecccCcCHHHHHHHHHHHhc
Q 014494 388 VCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+|+.+|+||++|.+.|.++..
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccCCCHHHHHHHHHHhhh
Confidence 999999999999999999986
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.20 E-value=3.9e-10 Score=105.47 Aligned_cols=166 Identities=20% Similarity=0.190 Sum_probs=100.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCC--cccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHH----
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI---- 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~--~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i---- 310 (423)
+|.|+|.+||||||+.|.|+|....... ....|..+......+.+..+.++||||+.+.............+.+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 5899999999999999999998664332 2334566777777889999999999999764433222223333322
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh-hhcccCCCCeEEEEeCCCcCChHH-----------HHHHHHH
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDGAEE-----------VYEELER 378 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IiVlNKiDl~~~~~-----------~~~~l~~ 378 (423)
...+++|+|+.+... ...+ ...+..+.. +.+. ..+-.|||++..|...... .++.|.+
T Consensus 82 ~g~ha~llVi~~~r~--------t~~~-~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRF--------TEED-REVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE 151 (212)
T ss_dssp T-ESEEEEEEETTB---------SHHH-HHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEecCcc--------hHHH-HHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhh
Confidence 335899999998741 1222 223333332 3333 2457888888888654321 1333444
Q ss_pred HcCCCcEEEEecc------cCcCHHHHHHHHHHHhccccCC
Q 014494 379 RVQGVPIYPVCAV------LEEGVPELKVGLRMLVNGEKSE 413 (423)
Q Consensus 379 ~~~~~~ii~vSA~------~g~gi~eL~~~i~~~l~~~~~~ 413 (423)
.+ +..++.++.. ....+.+|++.|.+++.+....
T Consensus 152 ~c-~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 152 KC-GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp HT-TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hc-CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 44 3467767665 2356888999999998876543
No 277
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.20 E-value=7.4e-11 Score=100.48 Aligned_cols=153 Identities=25% Similarity=0.322 Sum_probs=105.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
+++++|..||||||||+.|.+..+.- ...|-..++..+.+++ ..+.+||+.|.-. ...-|..+++..|.
T Consensus 19 rilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~-------IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 19 RILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQRG-------IRPYWSNYYENVDG 88 (185)
T ss_pred EEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCccc-------cchhhhhhhhccce
Confidence 68999999999999999999875531 1112334456677776 8999999998743 66678889999999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-------CCCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~-------~~~~ii~v 388 (423)
++||+|..+ ..-++....-+.||.. ...+...|.+|..||-|+..+... +.+...+ ..+.|-.+
T Consensus 89 lIyVIDS~D-------~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~~-eeia~klnl~~lrdRswhIq~c 159 (185)
T KOG0074|consen 89 LIYVIDSTD-------EKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAKV-EEIALKLNLAGLRDRSWHIQEC 159 (185)
T ss_pred EEEEEeCCc-------hHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcch-HHHHHhcchhhhhhceEEeeeC
Confidence 999999655 1223333222222211 124568899999999998765321 1111111 23567889
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||.+++|+..-.+++....+
T Consensus 160 sals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccccccCccCcchhhhcCCC
Confidence 99999999888888775543
No 278
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.18 E-value=1.1e-10 Score=111.15 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=63.5
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHhc--cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIER--TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
.+.++||||+++--.. ...+..+.+.+.+ .-++++++|+... .++..-+..++..+....+ .+.|.|.|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~------~~~~~f~s~~L~s~s~~~~--~~lP~vnv 162 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFC------SDPSKFVSSLLLSLSIMLR--LELPHVNV 162 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-------SSHHHHHHHHHHHHHHHHH--HTSEEEEE
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccc------cChhhHHHHHHHHHHHHhh--CCCCEEEe
Confidence 6899999999982111 1122233344432 3478999998863 2344444444333322211 37999999
Q ss_pred EeCCCcCChH-----------------------HHHHHHHHHc---CCC-cEEEEecccCcCHHHHHHHHHHHh
Q 014494 361 ANKIDEDGAE-----------------------EVYEELERRV---QGV-PIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 361 lNKiDl~~~~-----------------------~~~~~l~~~~---~~~-~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+||+|+.... ...+.+.+.+ ... .++++|+.+++|+++|+..|.+.+
T Consensus 163 lsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 163 LSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp E--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred eeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 9999998721 1122333333 223 799999999999999999988765
No 279
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.18 E-value=1e-10 Score=106.02 Aligned_cols=117 Identities=25% Similarity=0.405 Sum_probs=68.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe---CCeeEEEEcCCCCcCCccccccchHHHHHH---
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---DDIQITVADIPGLIKGAHENRGLGHAFLRH--- 309 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~---~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~--- 309 (423)
+.|.|+|++|||||+|+..|....... -.|.+.++.. +.+ .+..+.++|+||+.+ +...++..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~r-------lr~~~~~~~~~ 72 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIA-YNVNNSKGKKLRLVDIPGHPR-------LRSKLLDELKY 72 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEE-CCGSSTCGTCECEEEETT-HC-------CCHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCce-EEeecCCCCEEEEEECCCcHH-------HHHHHHHhhhc
Confidence 479999999999999999999762211 1233334433 223 236899999999976 55566554
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc-ccCCCCeEEEEeCCCcCCh
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IiVlNKiDl~~~ 369 (423)
...+..|+||+|.+.. .....+....+..+..... .-...|++|++||.|+..+
T Consensus 73 ~~~~k~IIfvvDSs~~------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTD------QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HGGEEEEEEEEETTTH------HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hhhCCEEEEEEeCccc------hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 8899999999998741 0111222222222211111 1235788888899999865
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.17 E-value=3.6e-10 Score=106.54 Aligned_cols=122 Identities=21% Similarity=0.270 Sum_probs=73.8
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhc--cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIER--TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~--ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
...+++||||+|+-..-.. -+.-....+.. --++++|+|..... .+..-...++-.+.-+.+ ...|.|+
T Consensus 116 ~~~~liDTPGQIE~FtWSA-sGsIIte~lass~ptvv~YvvDt~rs~------~p~tFMSNMlYAcSilyk--tklp~iv 186 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSA-SGSIITETLASSFPTVVVYVVDTPRST------SPTTFMSNMLYACSILYK--TKLPFIV 186 (366)
T ss_pred cCEEEEcCCCceEEEEecC-CccchHhhHhhcCCeEEEEEecCCcCC------CchhHHHHHHHHHHHHHh--ccCCeEE
Confidence 3589999999998322110 11111122222 24789999987631 232223333222211111 3789999
Q ss_pred EEeCCCcCChHHH----------HHHH-------------------HHHcCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 360 VANKIDEDGAEEV----------YEEL-------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 360 VlNKiDl~~~~~~----------~~~l-------------------~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+||+|+.+..-. .+.+ .+.+.....+.|||.+|.|.++++..+.+.++++
T Consensus 187 vfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 187 VFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred EEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9999999875311 1111 1223457899999999999999999999888776
Q ss_pred cC
Q 014494 411 KS 412 (423)
Q Consensus 411 ~~ 412 (423)
..
T Consensus 267 ~~ 268 (366)
T KOG1532|consen 267 EE 268 (366)
T ss_pred HH
Confidence 43
No 281
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4e-10 Score=102.70 Aligned_cols=155 Identities=23% Similarity=0.361 Sum_probs=103.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHh---c
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE---R 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~---~ 312 (423)
..|.|+|+.++|||+|+-.|.... ..-.+|...|+.+.+.+++....++|.||+.+ +...++.++. +
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSENVTLVDLPGHSR-------LRRKLLEYLKHNYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCcceEEEeCCCcHH-------HHHHHHHHcccccc
Confidence 489999999999999998887541 12235667899999999988899999999987 6666666665 7
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccC-CCCeEEEEeCCCcCChH---HHHHHHHHHc--------
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLS-DRPSLVVANKIDEDGAE---EVYEELERRV-------- 380 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~-~~P~IiVlNKiDl~~~~---~~~~~l~~~~-------- 380 (423)
+..++||+|..... ....+...++-.+..-..... ..|.+|+.||.|+..+. .+.+.|.+.+
T Consensus 109 akaiVFVVDSa~f~------k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs 182 (238)
T KOG0090|consen 109 AKAIVFVVDSATFL------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS 182 (238)
T ss_pred ceeEEEEEeccccc------hhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 89999999987631 122233333333222222223 35666667999997542 1111111100
Q ss_pred ------------------------------CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 381 ------------------------------QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 381 ------------------------------~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
....+.+.|++++ +++++.+||.+.+
T Consensus 183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0135778888888 7999999998753
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.16 E-value=3.1e-10 Score=110.75 Aligned_cols=120 Identities=24% Similarity=0.294 Sum_probs=77.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHh---
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--- 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~--- 311 (423)
.+|+++|.+|+||||++|+|++.+.. ++.+..+|..+........+..+.++||||+.+....+ ......++
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~----e~~~~~ik~~l 114 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN----DQAVNIIKRFL 114 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH----HHHHHHHHHHh
Confidence 38999999999999999999998653 45555556666655566778999999999998753322 22222222
Q ss_pred ---ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh-hhcccCCCCeEEEEeCCCcC
Q 014494 312 ---RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 312 ---~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IiVlNKiDl~ 367 (423)
..|++|+|..+.... .+ .....+++.+.. |... ...+.|+|+|+.|..
T Consensus 115 ~~~g~DvVLyV~rLD~~R-----~~--~~DkqlLk~Iqe~FG~~-iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-----VD--TLDGQVIRAITDSFGKD-IWRKSLVVLTHAQFS 166 (313)
T ss_pred hcCCCCEEEEEeccCccc-----CC--HHHHHHHHHHHHHhhhh-hhccEEEEEECCccC
Confidence 478999996654310 01 111223333332 2222 246899999999965
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.16 E-value=8.5e-10 Score=107.30 Aligned_cols=141 Identities=19% Similarity=0.331 Sum_probs=81.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCC---------cccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccc--
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGH---------YSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGL-- 302 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~---------~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l-- 302 (423)
+|+++|.+|+|||||+|+|.+....... +..| ++......+..++ ..+.++||||+.+.......+
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~ 85 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKP 85 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHH
Confidence 7899999999999999999987543322 2222 2333444455555 579999999997643211100
Q ss_pred -----hHHHHHHH-------h-------ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 303 -----GHAFLRHI-------E-------RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 303 -----~~~fl~~i-------~-------~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
..+|..++ + ++++++++++.+.. +..+++ ..++..+.. ..|.|+|+||
T Consensus 86 i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-----~l~~~D--~~~lk~l~~------~v~vi~VinK 152 (276)
T cd01850 86 IVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-----GLKPLD--IEFMKRLSK------RVNIIPVIAK 152 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-----CCCHHH--HHHHHHHhc------cCCEEEEEEC
Confidence 11121111 1 46889999987641 011221 333344421 5899999999
Q ss_pred CCcCChHHH---HHHHHHHc--CCCcEEEEec
Q 014494 364 IDEDGAEEV---YEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 364 iDl~~~~~~---~~~l~~~~--~~~~ii~vSA 390 (423)
+|+...++. .+.+.+.+ .+.+++....
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 999775432 22233322 2456665554
No 284
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.15 E-value=3e-10 Score=95.04 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=94.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.++++||..|+|||||+++|-|.. |+......+.+++. ..+||||-.- +++-+-+..+.....+|+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------~lykKTQAve~~d~--~~IDTPGEy~---~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------TLYKKTQAVEFNDK--GDIDTPGEYF---EHPRWYHALITTLQDADV 67 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------hhhcccceeeccCc--cccCCchhhh---hhhHHHHHHHHHhhccce
Confidence 378999999999999999999863 23333455666542 3479999643 122344455666778899
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEEEEeccc
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIYPVCAVL 392 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii~vSA~~ 392 (423)
+++|-.+.++.. +-|-. + ..+..+|.|=|++|+|+++... ++..++++ ...+||.+|+.+
T Consensus 68 i~~v~~and~~s----~f~p~-----------f-~~~~~k~vIgvVTK~DLaed~d-I~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 68 IIYVHAANDPES----RFPPG-----------F-LDIGVKKVIGVVTKADLAEDAD-ISLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred eeeeecccCccc----cCCcc-----------c-ccccccceEEEEecccccchHh-HHHHHHHHHHcCCcceEEEeccC
Confidence 999988876311 00100 0 1234688999999999996433 33333322 457899999999
Q ss_pred CcCHHHHHHHHHH
Q 014494 393 EEGVPELKVGLRM 405 (423)
Q Consensus 393 g~gi~eL~~~i~~ 405 (423)
..|+++|++.+..
T Consensus 131 ~~gv~~l~~~L~~ 143 (148)
T COG4917 131 NQGVEELVDYLAS 143 (148)
T ss_pred cccHHHHHHHHHh
Confidence 9999999998764
No 285
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.8e-10 Score=98.43 Aligned_cols=153 Identities=25% Similarity=0.273 Sum_probs=102.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
++.++|.-||||||++-.+---+. +...| |...+...+.+.+.++.+||.-|.-+ +..-|..+++.+|.+
T Consensus 20 rililgldGaGkttIlyrlqvgev-vttkP--tigfnve~v~yKNLk~~vwdLggqtS-------irPyWRcYy~dt~av 89 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEV-VTTKP--TIGFNVETVPYKNLKFQVWDLGGQTS-------IRPYWRCYYADTDAV 89 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCcc-cccCC--CCCcCccccccccccceeeEccCccc-------ccHHHHHHhcccceE
Confidence 678899999999999876632211 11111 23334556777888999999998866 555677889999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHH-----HHHHHHcCCCcEEEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVY-----EELERRVQGVPIYPV 388 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~-----~~l~~~~~~~~ii~v 388 (423)
+||||.++.... + .....+..++.| +.|.+...++++||.|..... +.. +.|++. .+.||..
T Consensus 90 IyVVDssd~dri--s-~a~~el~~mL~E-----~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r--~~~Iv~t 159 (182)
T KOG0072|consen 90 IYVVDSSDRDRI--S-IAGVELYSMLQE-----EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR--IWQIVKT 159 (182)
T ss_pred EEEEeccchhhh--h-hhHHHHHHHhcc-----HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh--eeEEEee
Confidence 999999873110 0 011112222211 344565667777999987653 322 233333 4689999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||.+|+|+++..+|+.+-+++
T Consensus 160 SA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 160 SAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccccccCCcHHHHHHHHHHhc
Confidence 999999999999999988765
No 286
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.14 E-value=1.7e-09 Score=102.09 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=93.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcC-CCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA-KPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~-~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|.|+|+.+|||||+.+.+... .|.-..+...|.++....+.+.+ ..+.+||.||+....... +..+...-++.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--ccccHHHHHhccC
Confidence 5889999999999999999865 34455566778888877776554 799999999997643321 1112234468899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---H----HHHHHHHc--C---C
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---V----YEELERRV--Q---G 382 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~----~~~l~~~~--~---~ 382 (423)
++|||+|+.... .......+...+..+..++| +....+++.|+|+...+. . .+.+.+.. . .
T Consensus 79 ~LIyV~D~qs~~----~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 79 VLIYVFDAQSDD----YDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp EEEEEEETT-ST----CHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred EEEEEEEccccc----HHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999998420 11233444555555556655 567778889999986542 2 22233222 1 2
Q ss_pred CcEEEEecccCcCHHHHHHHH
Q 014494 383 VPIYPVCAVLEEGVPELKVGL 403 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i 403 (423)
..++.+|-.+. .|-+-+..|
T Consensus 152 ~~~~~TSI~D~-Sly~A~S~I 171 (232)
T PF04670_consen 152 ITFFLTSIWDE-SLYEAWSKI 171 (232)
T ss_dssp EEEEEE-TTST-HHHHHHHHH
T ss_pred eEEEeccCcCc-HHHHHHHHH
Confidence 56788887764 344433333
No 287
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=9.7e-10 Score=106.41 Aligned_cols=164 Identities=24% Similarity=0.261 Sum_probs=106.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-------CCCCcccceecceEEEEEeC---------CeeEEEEcCCCCcCCccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-------AVGHYSFTTLRPNLGNMNFD---------DIQITVADIPGLIKGAHENR 300 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-------~i~~~~ftTl~~~~g~v~~~---------~~~i~l~DtpG~i~~a~~~~ 300 (423)
.+|++|+-.+|||||-++|+.... ..+.....|++.....+... ..++.++|.||+..
T Consensus 9 N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas------ 82 (522)
T KOG0461|consen 9 NLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS------ 82 (522)
T ss_pred eeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH------
Confidence 789999999999999999975321 12223344555443333322 15789999999864
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHH---
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYE--- 374 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~--- 374 (423)
|....+....-.|+.++|+|+..... +...-..++.++ ..+..|+|+||+|..... ..++
T Consensus 83 -LIRtiiggaqiiDlm~lviDv~kG~Q------tQtAEcLiig~~-------~c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 83 -LIRTIIGGAQIIDLMILVIDVQKGKQ------TQTAECLIIGEL-------LCKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred -HHHHHHhhhheeeeeeEEEehhcccc------cccchhhhhhhh-------hccceEEEEeccccccchhhhhHHHHHH
Confidence 65565555566799999999987422 111112222333 367888999999986542 1222
Q ss_pred -HHHHHc------CCCcEEEEecccC----cCHHHHHHHHHHHhccccCCcCCcccc
Q 014494 375 -ELERRV------QGVPIYPVCAVLE----EGVPELKVGLRMLVNGEKSERLSLDKI 420 (423)
Q Consensus 375 -~l~~~~------~~~~ii~vSA~~g----~gi~eL~~~i~~~l~~~~~~~~~~~~i 420 (423)
.+++-+ .+.||+++||+.| ++|.+|.+.|...+.+.........-|
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpflm 205 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPFLM 205 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCeEE
Confidence 222222 3479999999999 889999999988887766555444333
No 288
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=103.94 Aligned_cols=154 Identities=21% Similarity=0.250 Sum_probs=114.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC-C--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD-D--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~-~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
++.+||..++|||+||-..+.. .....|..|-.+.....+.++ + ..+.+|||.|+.+... +. . + .+..+
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~-~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr----lR-p-l-sY~~t 77 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTN-AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR----LR-P-L-SYPQT 77 (198)
T ss_pred EEEEECCCCcCceEEEEEeccC-cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc----cc-c-c-CCCCC
Confidence 6899999999999999888764 445566666566777778885 6 6688999999987422 21 1 1 56788
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHH-HHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHH
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EEL 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l 376 (423)
|++|.++++.++ .+++. ..+|+-|+..+.+ +.|+|+|.+|.|+....... ..+
T Consensus 78 dvfl~cfsv~~p-------~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 78 DVFLLCFSVVSP-------ESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred CEEEEEEEcCCh-------hhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 999999998873 45554 5677788888765 79999999999998532222 234
Q ss_pred HHHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 377 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 377 ~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
++......++.+||++..|+.++++......-
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence 44444568999999999999999887766543
No 289
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.09 E-value=1.8e-09 Score=108.30 Aligned_cols=159 Identities=23% Similarity=0.289 Sum_probs=110.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC------CC----------CCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP------AV----------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH 297 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~------~i----------~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~ 297 (423)
.+..|++|-+..-|||||+..|..+.- .+ ....+.|+-..--.+.|++..+.++||||+.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD--- 80 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD--- 80 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC---
Confidence 345789999999999999999975411 11 11224454444556788999999999999976
Q ss_pred ccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHH
Q 014494 298 ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEE 375 (423)
Q Consensus 298 ~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~ 375 (423)
++-..-+.+.-.|.+++++|+.+. +.-+.+-++..-.. ...+.|+|+||+|.+.+ +++.++
T Consensus 81 ----FGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~-----~gL~PIVVvNKiDrp~Arp~~Vvd~ 143 (603)
T COG1217 81 ----FGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALA-----LGLKPIVVINKIDRPDARPDEVVDE 143 (603)
T ss_pred ----ccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHH-----cCCCcEEEEeCCCCCCCCHHHHHHH
Confidence 555555666778999999999973 33333333332211 15667889999999875 333443
Q ss_pred HHHHc---------CCCcEEEEecccC----------cCHHHHHHHHHHHhccccC
Q 014494 376 LERRV---------QGVPIYPVCAVLE----------EGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 376 l~~~~---------~~~~ii~vSA~~g----------~gi~eL~~~i~~~l~~~~~ 412 (423)
.-++| -+.|+++.||..| .+++.|++.|.+.++....
T Consensus 144 vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 144 VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 33333 2579999999876 4788899999999987654
No 290
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.09 E-value=1.3e-09 Score=101.59 Aligned_cols=54 Identities=24% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 354 DRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 354 ~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
..|.++|+||+|+... .+..+.+++..+..+++++||+++.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5788999999999753 13344555555668999999999999999999998754
No 291
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.07 E-value=4.5e-10 Score=106.19 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=64.2
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
+.++|+.|+|... .-..-..-||.+++|+-..... .... +..++.+.+-|+|+
T Consensus 122 ~D~IiiETVGvGQ----------sE~~I~~~aD~~v~v~~Pg~GD-------~iQ~----------~KaGimEiaDi~vV 174 (266)
T PF03308_consen 122 FDVIIIETVGVGQ----------SEVDIADMADTVVLVLVPGLGD-------EIQA----------IKAGIMEIADIFVV 174 (266)
T ss_dssp -SEEEEEEESSST----------HHHHHHTTSSEEEEEEESSTCC-------CCCT----------B-TTHHHH-SEEEE
T ss_pred CCEEEEeCCCCCc----------cHHHHHHhcCeEEEEecCCCcc-------HHHH----------HhhhhhhhccEEEE
Confidence 4678888888654 1223456688888887665431 1111 11233456789999
Q ss_pred eCCCcCChHHHHHHHHHHc---C------CCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 362 NKIDEDGAEEVYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~---~------~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
||.|....+.....++..+ . ..+++.+||.+++|+++|.+.|.++...
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999887766555555433 1 2589999999999999999999876543
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.07 E-value=2e-09 Score=118.03 Aligned_cols=114 Identities=19% Similarity=0.290 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCC----------CCcc------cceecceEEEEEe----CCeeEEEEcCCCCc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------GHYS------FTTLRPNLGNMNF----DDIQITVADIPGLI 293 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i----------~~~~------ftTl~~~~g~v~~----~~~~i~l~DtpG~i 293 (423)
.+..|+++|+.++|||||+.+|....-.+ .++. ..|+......+.+ .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45589999999999999999996431111 1111 2344444444444 35788999999997
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
+ +.......+..+|++++|+|+.... ..+...++...... ..|.|+++||+|+.
T Consensus 99 d-------f~~~~~~~l~~~D~avlVvda~~g~--------~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 D-------FGGDVTRAMRAVDGAIVVVDAVEGV--------MPQTETVLRQALRE-----RVKPVLFINKVDRL 152 (731)
T ss_pred C-------hHHHHHHHHHhcCEEEEEEECCCCC--------CccHHHHHHHHHHc-----CCCeEEEEECchhh
Confidence 6 4455667788899999999987632 12233333332221 46889999999986
No 293
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.2e-09 Score=108.65 Aligned_cols=151 Identities=24% Similarity=0.295 Sum_probs=96.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCC-------------------------------CCCCCcccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAK-------------------------------PAVGHYSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~-------------------------------~~i~~~~ftTl~~~~g~v~~~~~~i~ 285 (423)
.++++|+..||||||+-+|.-.- .+...+.+.|.+.....+..+...++
T Consensus 9 nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~t 88 (428)
T COG5256 9 NLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFT 88 (428)
T ss_pred EEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEE
Confidence 78999999999999999984320 00112335666666666666668899
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
++|+||+-. +...+..-...||+.++|+|++.... ..+.....+.+.... ++..+.-...|+++||||
T Consensus 89 IiDaPGHrd-------FvknmItGasqAD~aVLVV~a~~~ef-E~g~~~~gQtrEH~~----La~tlGi~~lIVavNKMD 156 (428)
T COG5256 89 IIDAPGHRD-------FVKNMITGASQADVAVLVVDARDGEF-EAGFGVGGQTREHAF----LARTLGIKQLIVAVNKMD 156 (428)
T ss_pred EeeCCchHH-------HHHHhhcchhhccEEEEEEECCCCcc-ccccccCCchhHHHH----HHHhcCCceEEEEEEccc
Confidence 999999533 55666677788999999999987411 011112222222211 122333456666779999
Q ss_pred cCCh-HHHHH----H---HHHHc----CCCcEEEEecccCcCHHHH
Q 014494 366 EDGA-EEVYE----E---LERRV----QGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 366 l~~~-~~~~~----~---l~~~~----~~~~ii~vSA~~g~gi~eL 399 (423)
..+- ++.++ . |.+.+ .+.+++||||..|+|+-+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9853 22222 2 33333 2467999999999998653
No 294
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=1.6e-09 Score=96.82 Aligned_cols=112 Identities=26% Similarity=0.264 Sum_probs=68.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEE-------------e-------------------------
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMN-------------F------------------------- 279 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~-------------~------------------------- 279 (423)
|+++|..+||||||||+|.|......+...+|..++.-... +
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999764332222233222211100 0
Q ss_pred ------------------CCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHH
Q 014494 280 ------------------DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDL 341 (423)
Q Consensus 280 ------------------~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l 341 (423)
....+.|+||||+........ ....+++..+|++++|+++.... .......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~-------~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDL-------TESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTG-------GGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCccc-------chHHHHHH
Confidence 002589999999976443332 44556778999999999998732 22233333
Q ss_pred HHHHHhhhcccCCCCeEEEEeCC
Q 014494 342 IIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 342 ~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
...+.. .....|+|+||+
T Consensus 151 ~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTT-----TCSSEEEEEE-G
T ss_pred HHHhcC-----CCCeEEEEEcCC
Confidence 333321 245589999985
No 295
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.04 E-value=5.3e-09 Score=116.77 Aligned_cols=154 Identities=26% Similarity=0.263 Sum_probs=93.2
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC------------------eeEEEEcCCCC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------IQITVADIPGL 292 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~------------------~~i~l~DtpG~ 292 (423)
+.+...--|++.+ |||||.+|.+........-+.|.+.....+.++. ..+.|+||||+
T Consensus 461 ~~~~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh 536 (1049)
T PRK14845 461 ETHNFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH 536 (1049)
T ss_pred ccCcceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc
Confidence 3333333455543 9999999998876544444444443333333321 13899999997
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--- 369 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--- 369 (423)
.. +..........+|++++|+|+++... .+....+..+.. .+.|.|+|+||+|+...
T Consensus 537 e~-------F~~lr~~g~~~aDivlLVVDa~~Gi~--------~qT~e~I~~lk~-----~~iPiIVViNKiDL~~~~~~ 596 (1049)
T PRK14845 537 EA-------FTSLRKRGGSLADLAVLVVDINEGFK--------PQTIEAINILRQ-----YKTPFVVAANKIDLIPGWNI 596 (1049)
T ss_pred HH-------HHHHHHhhcccCCEEEEEEECcccCC--------HhHHHHHHHHHH-----cCCCEEEEEECCCCcccccc
Confidence 54 22222334566899999999986321 111222223322 26899999999998531
Q ss_pred --------------HHHHHHH-----------HH-------------HcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 370 --------------EEVYEEL-----------ER-------------RVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 370 --------------~~~~~~l-----------~~-------------~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+...+++ .+ .....++++|||++|+||++|+..|..+.+
T Consensus 597 ~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 597 SEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111111 11 113568999999999999999988865443
No 296
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.02 E-value=4.8e-09 Score=99.67 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecce-----------EEEEEe-----------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-----------LGNMNF----------------------- 279 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~-----------~g~v~~----------------------- 279 (423)
..+.|++||.+||||||+|++|++........-..|..|+ ...+.+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999986411111111111111 011111
Q ss_pred -----------------CC-eeEEEEcCCCCcCCcccc--c----cchHHHHHHHh-ccceeEEEEecCCCCCCCCCCCc
Q 014494 280 -----------------DD-IQITVADIPGLIKGAHEN--R----GLGHAFLRHIE-RTKVLAYVVDLASGLDGRKGIKP 334 (423)
Q Consensus 280 -----------------~~-~~i~l~DtpG~i~~a~~~--~----~l~~~fl~~i~-~ad~ll~VvD~s~~~~~~~~~~~ 334 (423)
++ ..++++||||+...+..+ . .+......+++ ..+++++|+|+..... .
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~------~ 178 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA------N 178 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC------c
Confidence 00 368999999997542211 1 12233456777 4469999999875321 1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHH
Q 014494 335 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELE 377 (423)
Q Consensus 335 ~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~ 377 (423)
.....+..++.. ..+|.|+|+||+|..... +.++.++
T Consensus 179 -~d~l~ia~~ld~-----~~~rti~ViTK~D~~~~~~~~~~~~~ 216 (240)
T smart00053 179 -SDALKLAKEVDP-----QGERTIGVITKLDLMDEGTDARDILE 216 (240)
T ss_pred -hhHHHHHHHHHH-----cCCcEEEEEECCCCCCccHHHHHHHh
Confidence 122233344422 378999999999997643 3344333
No 297
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.02 E-value=2.2e-09 Score=119.35 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCC----------CCc------ccceecceEEEEEeC----------------C
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAV----------GHY------SFTTLRPNLGNMNFD----------------D 281 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i----------~~~------~ftTl~~~~g~v~~~----------------~ 281 (423)
.+.+|+++|+.++|||||+.+|....-.+ .++ ...|+....-.+.+. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 45589999999999999999997432111 111 123444333344442 4
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+.++||||+.+ +.......+..+|.+++|+|+..... .+.+.++..+.. .+.|.|+++
T Consensus 98 ~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~Gv~--------~~t~~~~~~~~~-----~~~p~i~~i 157 (843)
T PLN00116 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVC--------VQTETVLRQALG-----ERIRPVLTV 157 (843)
T ss_pred eEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCCCc--------ccHHHHHHHHHH-----CCCCEEEEE
Confidence 6789999999976 55556677888999999999987422 223344444432 278999999
Q ss_pred eCCCcC
Q 014494 362 NKIDED 367 (423)
Q Consensus 362 NKiDl~ 367 (423)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999997
No 298
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.01 E-value=6.2e-09 Score=96.45 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=42.7
Q ss_pred CCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 354 DRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 354 ~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
...-++|+||+|+... +...+.++...+..+++++||++|+|+++++++|.+.+
T Consensus 137 ~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 137 TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456999999999742 23345666666788999999999999999999998764
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=99.01 E-value=2.6e-09 Score=118.52 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=78.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCC-----C-----C------cccceecceEEEEEeC----------CeeEEEE
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAV-----G-----H------YSFTTLRPNLGNMNFD----------DIQITVA 287 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i-----~-----~------~~ftTl~~~~g~v~~~----------~~~i~l~ 287 (423)
.+.+|+++|+.++|||||+++|....-.+ + + ....|+....-.+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34489999999999999999997632111 0 1 1123333333334443 4679999
Q ss_pred cCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 288 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 288 DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
||||+.+ +.......+..+|++++|+|+.... ..+...++..+.. .+.|.|+++||+|+.
T Consensus 98 DtPG~~~-------f~~~~~~al~~~D~ailVvda~~g~--------~~~t~~~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD-------FSSEVTAALRVTDGALVVVDCVEGV--------CVQTETVLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCCc--------CccHHHHHHHHHH-----cCCCEEEEEEChhhh
Confidence 9999976 5555677788899999999988732 2233445554433 268999999999997
No 300
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7.3e-10 Score=105.14 Aligned_cols=160 Identities=24% Similarity=0.288 Sum_probs=93.9
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC-CCCCCCcc-----cceec--ceEEEEEeC-----CeeEEEEcCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRA-KPAVGHYS-----FTTLR--PNLGNMNFD-----DIQITVADIP 290 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~-~~~i~~~~-----ftTl~--~~~g~v~~~-----~~~i~l~Dtp 290 (423)
--.+++|.+..+..++|||+||||||||++++.|. +|..+... +.-.. ..+|++... +..+++.|+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 34578899999999999999999999999999995 33332211 11111 123333221 1344555544
Q ss_pred CCcCCccccccchHHH-HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 291 GLIKGAHENRGLGHAF-LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 291 G~i~~a~~~~~l~~~f-l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
-....... ++.... .+.-+.++-+|--+.+.+..+.+.+..+..+.++++ ++++|...|.++++ +-+|
T Consensus 99 ~~g~~~~~--g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~-----lARAL~~~p~lllLDEP~~gvD 171 (254)
T COG1121 99 LLGRYGKK--GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVL-----LARALAQNPDLLLLDEPFTGVD 171 (254)
T ss_pred HccCcccc--cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHH-----HHHHhccCCCEEEecCCcccCC
Confidence 33221111 110000 000111222233333444334444566778887764 45688899999999 8999
Q ss_pred cCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 366 EDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 366 l~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
.....++++.|.+.. .+..|+.||+
T Consensus 172 ~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 172 VAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 888888777777766 3667777775
No 301
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.00 E-value=1.6e-08 Score=87.40 Aligned_cols=164 Identities=20% Similarity=0.228 Sum_probs=116.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
..-+|.++|.-++|||++|..|.-.. ..-..+..|.-+...+.+.-+. ..+.+.||.|+-.+.. .|.. .+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---eLpr---hy 81 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---ELPR---HY 81 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---hhhH---hH
Confidence 34489999999999999999986443 3334444455566677776655 6789999999876411 1222 34
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc---CCCcEE
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV---QGVPIY 386 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~---~~~~ii 386 (423)
+..+|..++|++..+ +.++.....+..++.... .-...|+++++||+|+.++.+......+.+ .....+
T Consensus 82 ~q~aDafVLVYs~~d-------~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~ 153 (198)
T KOG3883|consen 82 FQFADAFVLVYSPMD-------PESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLW 153 (198)
T ss_pred hccCceEEEEecCCC-------HHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEE
Confidence 567899999999887 467777777777776642 334689999999999976654433333332 356789
Q ss_pred EEecccCcCHHHHHHHHHHHhcccc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.|+|.....+-+.+..+...+....
T Consensus 154 eVta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 154 EVTAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred EEEeccchhhhhHHHHHHHhccCCc
Confidence 9999999999998888887775543
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=4e-10 Score=99.66 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEe--CCeeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNF--DDIQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~--~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
..++.+||.-++||||+|.+.+.. ....+|--| -.+.....+.+ .+..+.+|||.|..+ +......+++
T Consensus 20 aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE-------fDaItkAyyr 91 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-------FDAITKAYYR 91 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh-------HHHHHHHHhc
Confidence 347899999999999999999853 111222111 11222222222 236778999999876 3333346788
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYP 387 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~ 387 (423)
.|...++|+.-++ +.+++....|.+++.. .....|.++|-||+|+.+.. ...+.+.+.+ ...++-
T Consensus 92 gaqa~vLVFSTTD-------r~SFea~~~w~~kv~~---e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~RlyR 160 (246)
T KOG4252|consen 92 GAQASVLVFSTTD-------RYSFEATLEWYNKVQK---ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HKRLYR 160 (246)
T ss_pred cccceEEEEeccc-------HHHHHHHHHHHHHHHH---HhccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hhhhhh
Confidence 8899999998887 4678888888777754 33579999999999998653 2344454444 457789
Q ss_pred EecccCcCHHHHHHHHHHHhcc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+|++...|+.+++..|.+.+.+
T Consensus 161 tSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 161 TSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999888766543
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.99 E-value=3.9e-09 Score=105.71 Aligned_cols=157 Identities=17% Similarity=0.258 Sum_probs=87.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC---CCC--cccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHH-
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA---VGH--YSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRH- 309 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~---i~~--~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~- 309 (423)
+||++|.+|+|||||+|+|-|.... .+. ..-||..++. +..+. ..+.+||.||...... -...++..
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f----~~~~Yl~~~ 110 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNF----PPEEYLKEV 110 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS------HHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCC----CHHHHHHHc
Confidence 8999999999999999999875322 222 2234444432 22333 5799999999865221 12334443
Q ss_pred -HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC------------ChHHHHHHH
Q 014494 310 -IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED------------GAEEVYEEL 376 (423)
Q Consensus 310 -i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~------------~~~~~~~~l 376 (423)
+.+.|++|++.+-.- ...-..+..++... .+|..+|-+|+|.. ..++.++.+
T Consensus 111 ~~~~yD~fiii~s~rf----------~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~I 175 (376)
T PF05049_consen 111 KFYRYDFFIIISSERF----------TENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEI 175 (376)
T ss_dssp TGGG-SEEEEEESSS------------HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred cccccCEEEEEeCCCC----------chhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCHHHHHHHH
Confidence 456687666654321 12333444555443 79999999999961 112344454
Q ss_pred HHHc---------CCCcEEEEeccc--CcCHHHHHHHHHHHhccccCCc
Q 014494 377 ERRV---------QGVPIYPVCAVL--EEGVPELKVGLRMLVNGEKSER 414 (423)
Q Consensus 377 ~~~~---------~~~~ii~vSA~~--g~gi~eL~~~i~~~l~~~~~~~ 414 (423)
++.+ ...+||.||+.. ...+..|.+.|..-++..+.+.
T Consensus 176 R~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 176 RENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp HHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred HHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 4432 345899999975 4568889999988888776543
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.94 E-value=4e-09 Score=102.72 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=95.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC------------------CC---------------CcccceecceEEEEEeCCe
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA------------------VG---------------HYSFTTLRPNLGNMNFDDI 282 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~------------------i~---------------~~~ftTl~~~~g~v~~~~~ 282 (423)
-++.-+|...-|||||+-+|...... .+ ...+.|++....++..+.+
T Consensus 7 LRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KR 86 (431)
T COG2895 7 LRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKR 86 (431)
T ss_pred eeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccc
Confidence 36778999999999999998543110 00 1124677777777777779
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE-EE
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV-VA 361 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii-Vl 361 (423)
+|+++||||+.. +...+..-...||+.++++|+.. ...++.++- +|...|...+.++ ..
T Consensus 87 kFIiADTPGHeQ-------YTRNMaTGASTadlAIlLVDAR~--------Gvl~QTrRH-----s~I~sLLGIrhvvvAV 146 (431)
T COG2895 87 KFIIADTPGHEQ-------YTRNMATGASTADLAILLVDARK--------GVLEQTRRH-----SFIASLLGIRHVVVAV 146 (431)
T ss_pred eEEEecCCcHHH-------HhhhhhcccccccEEEEEEecch--------hhHHHhHHH-----HHHHHHhCCcEEEEEE
Confidence 999999999876 44445555677999999999975 233433332 1222334555554 45
Q ss_pred eCCCcCCh-HHHHHHHHHHc---------CCCcEEEEecccCcCHHH
Q 014494 362 NKIDEDGA-EEVYEELERRV---------QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 362 NKiDl~~~-~~~~~~l~~~~---------~~~~ii~vSA~~g~gi~e 398 (423)
|||||.+- ++.++.|...| ....+||+||+.|+|+..
T Consensus 147 NKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred eeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 99999864 33444444332 345799999999998863
No 305
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.94 E-value=3.6e-09 Score=115.85 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC----------CCCCc------ccceecceEEE----EEeCCeeEEEEcCCCCc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP----------AVGHY------SFTTLRPNLGN----MNFDDIQITVADIPGLI 293 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~----------~i~~~------~ftTl~~~~g~----v~~~~~~i~l~DtpG~i 293 (423)
.+.+|+++|+.++|||||+++|....- ...++ ...|+...... +.+.+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 345899999999999999999864210 00111 12343332222 34456889999999997
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
+ +.......+..+|++++|+|+..... .+...++..+.. .+.|.|+|+||+|...
T Consensus 98 ~-------f~~~~~~al~~aD~~llVvda~~g~~--------~~t~~~~~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 D-------FGGDVTRAMRAVDGAIVVVCAVEGVM--------PQTETVLRQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred c-------cHHHHHHHHHhcCEEEEEEecCCCCC--------ccHHHHHHHHHH-----cCCCEEEEEEChhccc
Confidence 6 44456678899999999999876321 122233333222 2578899999999864
No 306
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=1.6e-09 Score=106.25 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=98.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe------------eEEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI------------QITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~------------~i~l~DtpG~ 292 (423)
-..++|+++.+..+||+|+|||||||||++|+|. +.|+.|.+.+.+. --.+.+.|.+
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 3678999999999999999999999999999997 5567777777652 1345566665
Q ss_pred cCCccccccchHHHHHHH---------hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE--
Q 014494 293 IKGAHENRGLGHAFLRHI---------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 361 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i---------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-- 361 (423)
.....-...+ .|...+ ++++-++-.+.+....+ .....+..-+++-..++.+|...|.++++
T Consensus 90 ~~~lT~~e~l--~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 90 YPELTVRENL--EFFARLYGLSKEEAEERIEELLELFGLEDKAN-----KKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred CccccHHHHH--HHHHHHhCCChhHHHHHHHHHHHHcCCchhhC-----cchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5533211111 111111 12333444444443111 12222333333333455677899999999
Q ss_pred --eCCCcCChHHHHHHHHHHcCCC-cEEEEecccCcCHHHHHH
Q 014494 362 --NKIDEDGAEEVYEELERRVQGV-PIYPVCAVLEEGVPELKV 401 (423)
Q Consensus 362 --NKiDl~~~~~~~~~l~~~~~~~-~ii~vSA~~g~gi~eL~~ 401 (423)
|.+|.....++.+.|++..... ..|.+|+|.-..++.+++
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 9999888888888888877433 456666665554555555
No 307
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=103.15 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=97.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--------------------eeE
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--------------------IQI 284 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--------------------~~i 284 (423)
-.+++|++..+..|+++|+|||||||+|+.|+|. +.|+.|.+.+.+ +.-
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 4678999999999999999999999999999997 455556555543 234
Q ss_pred EEEcCCCCcCCccccccc-hHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE--
Q 014494 285 TVADIPGLIKGAHENRGL-GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 361 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l-~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-- 361 (423)
+.||.|-+.. ...++-+ .......-++-+.+.-++|+...+..+....+..+ ++..+| ..+|.+.|.|+.+
T Consensus 109 l~Wdlp~~ds-~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq--RmraeL---aaaLLh~p~VLfLDE 182 (325)
T COG4586 109 LWWDLPALDS-LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ--RMRAEL---AAALLHPPKVLFLDE 182 (325)
T ss_pred eeeechhhhh-HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH--HHHHHH---HHHhcCCCcEEEecC
Confidence 7899983322 1000000 00011223344555666676643332221222222 222333 3467899999998
Q ss_pred --eCCCcCChHHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHHHH
Q 014494 362 --NKIDEDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLR 404 (423)
Q Consensus 362 --NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~ 404 (423)
=..|......+.+.+++.. .+.+|+.+|+ .-.+|..|++.+.
T Consensus 183 pTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH-~~~di~~lc~rv~ 228 (325)
T COG4586 183 PTVGLDVNAQANIREFLKEYNEERQATVLLTTH-IFDDIATLCDRVL 228 (325)
T ss_pred CccCcchhHHHHHHHHHHHHHHhhCceEEEEec-chhhHHHhhhheE
Confidence 3455555555666666655 3567777775 4556888877653
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.93 E-value=1.6e-08 Score=97.06 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=65.0
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
+.++|+.|+|....- ..-..-+|.+++|.=... .++++-+ ..++...--|+|+
T Consensus 144 ~DvIIVETVGvGQse----------v~I~~~aDt~~~v~~pg~----------GD~~Q~i-------K~GimEiaDi~vI 196 (323)
T COG1703 144 YDVIIVETVGVGQSE----------VDIANMADTFLVVMIPGA----------GDDLQGI-------KAGIMEIADIIVI 196 (323)
T ss_pred CCEEEEEecCCCcch----------hHHhhhcceEEEEecCCC----------CcHHHHH-------HhhhhhhhheeeE
Confidence 467888888765411 123445677766654332 1222222 2244566779999
Q ss_pred eCCCcCChHHHHHHHHHHc-----------CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 362 NKIDEDGAEEVYEELERRV-----------QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~-----------~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||.|....+.....+...+ ...+++-+||..|+|+++|.+.|.+.....
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 9999877653333332211 346899999999999999999998877543
No 309
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.93 E-value=3.4e-09 Score=100.99 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=91.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC-CCCCC----------CcccceecceEEEEEeCC---eeEEEEcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA-KPAVG----------HYSFTTLRPNLGNMNFDD---IQITVADIP 290 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~-~~~i~----------~~~ftTl~~~~g~v~~~~---~~i~l~Dtp 290 (423)
-..++|.+..+..++|+|+|||||||||++|++. +|..+ .++...+.-..+.+.... ..+++.|.+
T Consensus 18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V 97 (258)
T COG1120 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELV 97 (258)
T ss_pred EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehH
Confidence 3568899999999999999999999999999996 22211 111111222333333221 467788887
Q ss_pred CCcCCccccccchHHHH-HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 291 GLIKGAHENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 291 G~i~~a~~~~~l~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
-+.+..+.+. +. .+. +..+.++-.+..+++.+..+..-...+..+.+.++ ++.+|...|.|+++ |.+|
T Consensus 98 ~~GR~p~~~~-~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~-----iArALaQ~~~iLLLDEPTs~LD 170 (258)
T COG1120 98 LLGRYPHLGL-FG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVL-----IARALAQETPILLLDEPTSHLD 170 (258)
T ss_pred hhcCCccccc-cc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHH-----HHHHHhcCCCEEEeCCCccccC
Confidence 7666544332 11 110 01111111122222222111111123345544443 44577889999998 9999
Q ss_pred cCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 366 EDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 366 l~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
+...-++++.+++.. .+..++.+.+
T Consensus 171 i~~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 171 IAHQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 988888888887766 3466777765
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.90 E-value=1.3e-08 Score=107.21 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=76.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc---ccchHHHHHHHh
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN---RGLGHAFLRHIE 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~---~~l~~~fl~~i~ 311 (423)
.+|+|||.+|+|||||+|+|++.+. .+..+...|...........+..+.++||||+.+..... ..+.......+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Ls 198 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIK 198 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 4799999999999999999999764 344443334344333345567899999999998753211 112222223334
Q ss_pred --ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh-hhcccCCCCeEEEEeCCCcCC
Q 014494 312 --RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 312 --~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IiVlNKiDl~~ 368 (423)
.+|++|+|+.+... ....+.. .++..+.. +... ..+-+|||++..|...
T Consensus 199 k~gpDVVLlV~RLd~~------~~D~eD~-~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 199 KNPPDIVLYVDRLDMQ------TRDSNDL-PLLRTITDVLGPS-IWFNAIVTLTHAASAP 250 (763)
T ss_pred cCCCCEEEEEEeCCCc------cccHHHH-HHHHHHHHHhCHH-hHcCEEEEEeCCccCC
Confidence 36889988877531 1111221 23333322 2222 3578899999999764
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2e-08 Score=108.30 Aligned_cols=128 Identities=24% Similarity=0.329 Sum_probs=95.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHc---CCCCCCCcc---------------cceecceEEEEEeCC-eeEEEEcCCCCc
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISR---AKPAVGHYS---------------FTTLRPNLGNMNFDD-IQITVADIPGLI 293 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg---~~~~i~~~~---------------ftTl~~~~g~v~~~~-~~i~l~DtpG~i 293 (423)
....+|+|+++-.+|||||..+|.- .-.++++.. ..|+....-.+.+.+ ..+.++||||++
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 4556999999999999999999853 222222222 356666667788885 999999999999
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--H
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--E 371 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~ 371 (423)
+ +.....+.++-+|..+.|+|+... ...+.+.++.++..+ +.|.|+++||+|....+ .
T Consensus 88 D-------Ft~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~~~~ 147 (697)
T COG0480 88 D-------FTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKY-----GVPRILFVNKMDRLGADFYL 147 (697)
T ss_pred c-------cHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhc-----CCCeEEEEECccccccChhh
Confidence 8 555667788889999999999874 334556666766655 78999999999987653 3
Q ss_pred HHHHHHHHc
Q 014494 372 VYEELERRV 380 (423)
Q Consensus 372 ~~~~l~~~~ 380 (423)
..+.++..+
T Consensus 148 ~~~~l~~~l 156 (697)
T COG0480 148 VVEQLKERL 156 (697)
T ss_pred hHHHHHHHh
Confidence 455555555
No 312
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.4e-09 Score=110.11 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=102.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC------------------eeEEEEcCCCCcCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD------------------IQITVADIPGLIKG 295 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~------------------~~i~l~DtpG~i~~ 295 (423)
..|.++++|+..+|||-||..|.+..+.-+.+-+.|.....-.+...+ --++++||||+.++
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 346899999999999999999998777655555544322211221110 24789999998763
Q ss_pred ccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh------
Q 014494 296 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------ 369 (423)
Q Consensus 296 a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------ 369 (423)
.. .-.+....||++|+|+|+.+.++. ...+.+..+ . ..+.|+||.+||+|....
T Consensus 554 tn-------lRsrgsslC~~aIlvvdImhGlep----qtiESi~lL----R-----~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 554 TN-------LRSRGSSLCDLAILVVDIMHGLEP----QTIESINLL----R-----MRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred hh-------hhhccccccceEEEEeehhccCCc----chhHHHHHH----H-----hcCCCeEEeehhhhhhcccccCCC
Confidence 32 222345679999999999986541 223332222 1 237999999999997521
Q ss_pred H-----------HHHHH-----------HHHH-------c------CCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 370 E-----------EVYEE-----------LERR-------V------QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 370 ~-----------~~~~~-----------l~~~-------~------~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
. .+... +++. + .-..++|+||.+|+||.+|+.+|.++-+...
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 01111 1110 0 1146899999999999999999988766543
No 313
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.88 E-value=7.3e-09 Score=96.67 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=108.3
Q ss_pred CCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--EEEEcCCCCcCCc
Q 014494 219 AGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--ITVADIPGLIKGA 296 (423)
Q Consensus 219 ~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--i~l~DtpG~i~~a 296 (423)
.|..---..++|++..+...|++|+|||||||.++.|.+. +.|+.|.+.+++.. ..+.|..|+..
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLP-- 78 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLP-- 78 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccCh--
Confidence 3555556778999999999999999999999999999997 78888999998843 34555666542
Q ss_pred cccccchH--------HHHHHH---------hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 297 HENRGLGH--------AFLRHI---------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 297 ~~~~~l~~--------~fl~~i---------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+.++|-. .|+..+ ...+..+--+++..... ...+++.+-..+--.+..++.+.|.++
T Consensus 79 -EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-----~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 79 -EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-----KKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred -hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-----chHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 2333311 111111 11223333333333211 223333332222223334567999999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
++ +.+|.++.+...+.+.+.......|..|++..+.+++||+.+.-+
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 98 899988877666666655533455667778888999999988643
No 314
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=5.9e-09 Score=97.98 Aligned_cols=157 Identities=25% Similarity=0.233 Sum_probs=89.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE--------EEEcCCCCcCC--
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------TVADIPGLIKG-- 295 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i--------~l~DtpG~i~~-- 295 (423)
..++|++..+..|+|||++|||||||||.|+|. ..|+.|.+.+++..+ .+.--+-+...
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccchhh
Confidence 458889999999999999999999999999998 334444444433211 01111111110
Q ss_pred ccccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCc
Q 014494 296 AHENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 366 (423)
Q Consensus 296 a~~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl 366 (423)
.-+|..++... .+..++++-++..|.+++..+..+...+..+.+++ ++++++...|.|+++ .-.|.
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV-----aiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRV-----AIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHH-----HHHHHHhcCCCEEEEcCCcchhhH
Confidence 00111111111 01122344445555655544433333444444443 566788899999997 56666
Q ss_pred CChHHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHH
Q 014494 367 DGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVG 402 (423)
Q Consensus 367 ~~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~ 402 (423)
.+.....+.+.+.+ ...++++|++ +|+|-+..
T Consensus 164 lTR~~lq~~l~~lw~~~~~TvllVTH----di~EAv~L 197 (248)
T COG1116 164 LTREELQDELLRLWEETRKTVLLVTH----DVDEAVYL 197 (248)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeC----CHHHHHhh
Confidence 55555555555544 3578888886 57765443
No 315
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.85 E-value=1.3e-08 Score=95.21 Aligned_cols=149 Identities=25% Similarity=0.277 Sum_probs=89.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEE-----------------EEc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT-----------------VAD 288 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~-----------------l~D 288 (423)
+.++|+++.+..|+|+|++|||||||||.|.+. ..|+.|.+.+.+..+. ++-
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ 90 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECc
Confidence 468899999999999999999999999999987 3445555555542111 111
Q ss_pred CCCCcCCc--cccccchHHHH-----HHHhccceeEEEEecCCCCC-CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 289 IPGLIKGA--HENRGLGHAFL-----RHIERTKVLAYVVDLASGLD-GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 289 tpG~i~~a--~~~~~l~~~fl-----~~i~~ad~ll~VvD~s~~~~-~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
--.++... .++..+...+. ...+.+..++-++.+.+... ..+...+..+.+++ ++++++.+.|.||+
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRV-----AIARAL~~~P~iil 165 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRV-----AIARALINNPKIIL 165 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHH-----HHHHHHhcCCCeEE
Confidence 11122211 12222211110 12233444555555553322 22334455665554 45678889999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 361 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
+ --+|..+.+++++.+.+.. .+.+++.|++
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 8 5577777778888777765 2457777775
No 316
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.85 E-value=3.1e-09 Score=96.52 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=93.3
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~ 292 (423)
-++++|+.+.+..+||+|+|||||||+|+.|... +.|..|.+..++... ++.+-.|+
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCCcCh
Confidence 3678999999999999999999999999999986 777778777765211 11244444
Q ss_pred cCCccccccchHHH--HHHHh------cccee---EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 293 IKGAHENRGLGHAF--LRHIE------RTKVL---AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 293 i~~a~~~~~l~~~f--l~~i~------~ad~l---l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
+....-...+ ..| +..+. +.+.+ +-+-+..+ .....+..-+++-..+++++.++|.++|+
T Consensus 87 Y~RlT~rEnl-~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~--------rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 87 YARLTARENL-KYFARLNGLSRKEIKARIAELSKRLQLLEYLD--------RRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred hhhhhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH--------HHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 4321110000 000 00000 00000 11111110 00111122222223456788999999999
Q ss_pred ----eCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHH
Q 014494 362 ----NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKVGL 403 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i 403 (423)
|.+|+.....+.+.+++......++..|++.-+-++.|++.+
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 999998888777777776543456667777766688777754
No 317
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.83 E-value=7.3e-09 Score=102.30 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=89.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l~DtpG~ 292 (423)
-..++|+++.+..++|+|++|||||||+++|+|. +.|..|.+.+.+.. -.+.+-+++
T Consensus 23 l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~ 91 (306)
T PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDNL 91 (306)
T ss_pred EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCcC
Confidence 3568899999999999999999999999999997 33444555554421 223344444
Q ss_pred cCCccccccch--HHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 293 IKGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 293 i~~a~~~~~l~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
.........+. ..+ ....++++-++-.+++....+......+..+.+++ .++.++...|.++++
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl-----~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 92 DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL-----TLARALVNDPDVLVLDEPT 166 (306)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH-----HHHHHHhCCCCEEEEeCCC
Confidence 43211100010 000 00011122222233433322211122333443333 455677899999999
Q ss_pred eCCCcCChHHHHHHHHHHc-CCCcEEEEecccCcCHHHHHH
Q 014494 362 NKIDEDGAEEVYEELERRV-QGVPIYPVCAVLEEGVPELKV 401 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~~g~gi~eL~~ 401 (423)
+.+|......+.+.|++.. .+..++.+|+ .-.-++++++
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH-~l~e~~~~~d 206 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTH-FMEEAERLCD 206 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECC-CHHHHHHhCC
Confidence 8999888888777777764 3455565554 3333444444
No 318
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=1.4e-08 Score=96.18 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=31.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 319
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.5e-08 Score=102.79 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=94.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC--CC-------------C--CC--------------cccceecceEEEEEeCCe
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK--PA-------------V--GH--------------YSFTTLRPNLGNMNFDDI 282 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~--~~-------------i--~~--------------~~ftTl~~~~g~v~~~~~ 282 (423)
..-...++|+.+||||||+..|.-.- +. . ++ ..+.|.+...-.+.-+..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 33467899999999999999884320 00 0 11 112344333334444447
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEe
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN 362 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlN 362 (423)
.++++|.||+-. +...++.-+..+|+.++|+|++..... .+-++.++.+....-|.. |.-.-.||++|
T Consensus 256 ~~tliDaPGhkd-------Fi~nmi~g~sqaD~avLvvd~s~~~FE-~gfd~~gQtrEha~llr~----Lgi~qlivaiN 323 (603)
T KOG0458|consen 256 IVTLIDAPGHKD-------FIPNMISGASQADVAVLVVDASTGEFE-SGFDPGGQTREHALLLRS----LGISQLIVAIN 323 (603)
T ss_pred eEEEecCCCccc-------cchhhhccccccceEEEEEECCcchhh-hccCCCCchHHHHHHHHH----cCcceEEEEee
Confidence 899999999543 444556667788999999999864221 122344555554444433 33456677779
Q ss_pred CCCcCCh-HHHHHHHH--------HHc----CCCcEEEEecccCcCHHHH
Q 014494 363 KIDEDGA-EEVYEELE--------RRV----QGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 363 KiDl~~~-~~~~~~l~--------~~~----~~~~ii~vSA~~g~gi~eL 399 (423)
|+|+++= ++.+++|+ +.+ ....+||||+.+|+|+-..
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9999853 22222222 222 3458999999999998644
No 320
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=1.6e-08 Score=94.85 Aligned_cols=150 Identities=23% Similarity=0.219 Sum_probs=81.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--------EEEEcCCCCcCCcc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGAH 297 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--------i~l~DtpG~i~~a~ 297 (423)
..++|+++.+..++|+|++|||||||+++|+|.. .|..|.+.+++.. ..+.+.+.+.....
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~t 89 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-----------RPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLT 89 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECccccCcEEEEecccccccCCC
Confidence 5688999999999999999999999999999972 2334444444321 12233333332111
Q ss_pred --ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCc
Q 014494 298 --ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 366 (423)
Q Consensus 298 --~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl 366 (423)
++..+...+ ....+.+.-++..+++....+......+..+.+++ .++.++...|.++++ +-+|.
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl-----~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV-----ALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH-----HHHHHHHcCCCEEEECCCCCCCCH
Confidence 110000000 00001111122222222211111122344554444 344566789999998 88888
Q ss_pred CChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 367 DGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 367 ~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
.....+.+.|++.. .+..++.+|+.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 87777777777653 24566766653
No 321
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.82 E-value=9.8e-09 Score=95.97 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=80.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE----------------EEEc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVAD 288 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i----------------~l~D 288 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q 87 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-----------KPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQ 87 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEehhhcChhHHHHHHHhceEEec
Confidence 35788999999999999999999999999999973 23344444443211 1122
Q ss_pred CCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 289 IPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 289 tpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.+.+..... ++..+...+ ....+++.-++-.+++....+......+..+.+++ .++.++...|.++++
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~laral~~~p~llll 162 (216)
T TIGR00960 88 DHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRV-----AIARAIVHKPPLLLA 162 (216)
T ss_pred CccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEE
Confidence 222222111 000000000 00001111112222222211111122334444433 345577789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+-+|......+.+.|.+.. .+..++.+|+.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 8888877777777776653 34567777753
No 322
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.81 E-value=7.3e-09 Score=102.09 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=83.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCCc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 293 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~i 293 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+.+.+.+.
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 568899999999999999999999999999997 344455555554221 222333333
Q ss_pred CCccccccchH--HH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAHENRGLGH--AF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~~~~~l~~--~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
........+.. .+ ....++++-++..+++....+......+..+.+++ .++.++...|.++++ +
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRL-----DIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCc
Confidence 21111000000 00 00011122233333333222211122334444433 345677889999999 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 363 KIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
.+|......+.+.|++.. .+..++.+|+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH 182 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTH 182 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 899887777777777654 3456666665
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.9e-08 Score=98.32 Aligned_cols=125 Identities=24% Similarity=0.375 Sum_probs=91.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHc---C-------------CCCCCCc------ccceecceEEEEEeCCeeEEEEcCCCCc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR---A-------------KPAVGHY------SFTTLRPNLGNMNFDDIQITVADIPGLI 293 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg---~-------------~~~i~~~------~ftTl~~~~g~v~~~~~~i~l~DtpG~i 293 (423)
.+.+||-+|.||||||-..|.- + +...+++ .+.++...+-.+.|.++.+.++||||+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3789999999999999988741 1 0111222 1334444556677788999999999997
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--H
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--E 371 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~ 371 (423)
+ +.....+.+-.+|..+.|+|+... ...+..++++-+ .+.+.|++-.+||+|....+ +
T Consensus 93 D-------FSEDTYRtLtAvDsAvMVIDaAKG--------iE~qT~KLfeVc-----rlR~iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 93 D-------FSEDTYRTLTAVDSAVMVIDAAKG--------IEPQTLKLFEVC-----RLRDIPIFTFINKLDREGRDPLE 152 (528)
T ss_pred c-------cchhHHHHHHhhheeeEEEecccC--------ccHHHHHHHHHH-----hhcCCceEEEeeccccccCChHH
Confidence 6 666777888899999999999874 334555565544 34589999999999997654 6
Q ss_pred HHHHHHHHc
Q 014494 372 VYEELERRV 380 (423)
Q Consensus 372 ~~~~l~~~~ 380 (423)
+++++.+.+
T Consensus 153 LLdEiE~~L 161 (528)
T COG4108 153 LLDEIEEEL 161 (528)
T ss_pred HHHHHHHHh
Confidence 777777765
No 324
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.80 E-value=9.5e-09 Score=101.26 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=89.6
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEEEcCCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPG 291 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l~DtpG 291 (423)
--..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. ..+.+.+.
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~ 85 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecCCCC
Confidence 34678899999999999999999999999999997 33445555554422 12223333
Q ss_pred CcCCccccccch--HHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE---
Q 014494 292 LIKGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 361 (423)
Q Consensus 292 ~i~~a~~~~~l~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl--- 361 (423)
+.........+. ..+ ....++++-++..+++....+......+..+.+++ .++.++...|.++++
T Consensus 86 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 86 LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRV-----GLAQALIHDPKVLILDEP 160 (301)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCC
Confidence 332211000000 000 00011223333333443322221222334444433 345577899999999
Q ss_pred -eCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHHHH
Q 014494 362 -NKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPELKV 401 (423)
Q Consensus 362 -NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~ 401 (423)
+.+|....+.+.+.+.+...+..++.+|+ .-.-++++++
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~~~tiii~sH-~l~~~~~~~d 200 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGKDKTIILSTH-IMQEVEAICD 200 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEEcC-CHHHHHHhCC
Confidence 89998887777777777655555555554 3333444444
No 325
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.4e-08 Score=94.77 Aligned_cols=150 Identities=25% Similarity=0.272 Sum_probs=79.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+...+.+..
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-----------~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 85 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-----------RPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFP 85 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCCeEEEECCEEcCcCchhhccEEEEcCchhhcc
Confidence 5688999999999999999999999999999972 23334444433211 1122222221
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..+...+ ....+.+..++-.+++....+......+..+.+++ .++.++...|.++++ +-
T Consensus 86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl-----~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 86 HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRV-----ALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCccc
Confidence 111 000000000 00001111112222222211111112334444433 344567789999998 88
Q ss_pred CCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+|......+.+.|.+.. .+..++.+|+.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 88877777777777654 25566766653
No 326
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.80 E-value=1.2e-08 Score=102.22 Aligned_cols=150 Identities=21% Similarity=0.202 Sum_probs=85.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l~DtpG~ 292 (423)
-..++|++..+..+||+|++||||||||++|+|. +.|..|.+.+.+.. ..+.+.+.+
T Consensus 57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~ 125 (340)
T PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQFDNL 125 (340)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCCccC
Confidence 3578899999999999999999999999999997 34455555555421 123344444
Q ss_pred cCCccccccch--HHHH-----HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 293 IKGAHENRGLG--HAFL-----RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 293 i~~a~~~~~l~--~~fl-----~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
.........+. ..+. ...++++-++..+++....+......+..+.+++ .++.++...|.++++
T Consensus 126 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv-----~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 126 DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRL-----TLARALINDPQLLILDEPT 200 (340)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEECCC
Confidence 32211100000 0000 0011122223334443322222222333443333 455677899999999
Q ss_pred eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 362 NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+.+|......+++.|++.. .+..++.+|+
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH 230 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTH 230 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 8999888888888777764 3455555554
No 327
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.2e-08 Score=94.88 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=79.6
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--------E-EEEcCCCCcCCc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------I-TVADIPGLIKGA 296 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--------i-~l~DtpG~i~~a 296 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+...+.+....
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~ 85 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKM 85 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcCC
Confidence 568899999999999999999999999999997 23444555554421 1 222233332211
Q ss_pred cccccc--hHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 297 HENRGL--GHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 297 ~~~~~l--~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
.....+ ...+ ....+.+.-++..+++....+......+..+.+++ .++.++...|.++++ +.+|
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl-----~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 86 KVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKV-----QFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCcCCC
Confidence 110000 0000 00001111112222222111111112333443333 344566788999998 8888
Q ss_pred cCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 366 EDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 366 l~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
......+.+.+++.. .+..++.+|+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 877777777776654 3456666665
No 328
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1e-08 Score=98.79 Aligned_cols=161 Identities=22% Similarity=0.269 Sum_probs=96.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCc------------
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI------------ 293 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i------------ 293 (423)
.+++|+++.+...|+||++|||||||++++.+. -.|+.|.+.+++..+.-.+-.++.
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQh 91 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH 91 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhccEEecc
Confidence 568899999999999999999999999999987 446667777776433322221111
Q ss_pred ----CCc--cccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 294 ----KGA--HENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 294 ----~~a--~~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
... .++..+.... .+--.+..-++.++.+++..+..+...+..+.+++ .++++|...|.|++.
T Consensus 92 FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV-----aIARALa~~P~iLL~D 166 (339)
T COG1135 92 FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV-----AIARALANNPKILLCD 166 (339)
T ss_pred ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH-----HHHHHHhcCCCEEEec
Confidence 000 0000000000 01112233345556666544433333444444443 567889999999997
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHHH
Q 014494 362 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGL 403 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i 403 (423)
.-+|......+++.|++.. -+.+++.|++-..- +..+|+.+
T Consensus 167 EaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rV 212 (339)
T COG1135 167 EATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRV 212 (339)
T ss_pred CccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhh
Confidence 6667666667776666554 37789999874322 45555543
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.77 E-value=3e-08 Score=89.86 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=54.4
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEEe
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~vS 389 (423)
+-++|+|++...+.+. +..|.+.. .-++|+||.|+... +...+..++..++.+++++|
T Consensus 120 ~~v~VidvteGe~~P~----------------K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n 182 (202)
T COG0378 120 LRVVVIDVTEGEDIPR----------------KGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTN 182 (202)
T ss_pred eEEEEEECCCCCCCcc----------------cCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEe
Confidence 5577888876433111 11244444 78999999999743 34456667777899999999
Q ss_pred cccCcCHHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRML 406 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~ 406 (423)
+++|+|++++++++...
T Consensus 183 ~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 183 LKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999988754
No 330
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.77 E-value=2.5e-08 Score=93.31 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 331
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.76 E-value=1.5e-08 Score=94.63 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 332
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=1.1e-08 Score=95.24 Aligned_cols=33 Identities=30% Similarity=0.340 Sum_probs=31.2
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.++|++..+..++|+|++|||||||+++|+|..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 788999999999999999999999999999973
No 333
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.76 E-value=2.6e-08 Score=93.36 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l~DtpG~ 292 (423)
-..++|+++.+..++|+|++|||||||+++|+|..+ |..|.+.+++.. ..+...+.+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----------~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~ 86 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----------PTSGTAYINGYSIRTDRKAARQSLGYCPQFDAL 86 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----------CCCcEEEECCEecccchHHHhhhEEEecCcCCc
Confidence 356889999999999999999999999999999732 333444333321 122223333
Q ss_pred cCCccccccc--hHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 293 IKGAHENRGL--GHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 293 i~~a~~~~~l--~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
.........+ ...+ ....++++.++-.+++....+......+..+.+++ .++.++...|.++++
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~llllDEP~ 161 (220)
T cd03263 87 FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKL-----SLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHH-----HHHHHHhcCCCEEEECCCC
Confidence 2211100000 0000 00001111112122222111111112233343333 344567789999998
Q ss_pred eCCCcCChHHHHHHHHHHcCCCcEEEEec
Q 014494 362 NKIDEDGAEEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~~~~~ii~vSA 390 (423)
+-+|....+.+.+.|.+...+..++.+|+
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~~~tii~~sH 190 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRKGRSIILTTH 190 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88887777777777777655555666665
No 334
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.75 E-value=1.6e-08 Score=99.70 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=81.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l~DtpG~ 292 (423)
-..++|+++.+..++|+|++|||||||+++|+|.. .|..|.+.+++.. ..+.+.+.+
T Consensus 20 l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~ 88 (303)
T TIGR01288 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-----------SPDRGKITVLGEPVPSRARLARVAIGVVPQFDNL 88 (303)
T ss_pred EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECcccHHHHhhcEEEEeccccC
Confidence 35688999999999999999999999999999972 2333444443311 122233333
Q ss_pred cCCccccccch--HHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 293 IKGAHENRGLG--HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 293 i~~a~~~~~l~--~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
.........+. ..+ ....+.++-++..+.+....+......+..+.+++ .++.++...|.++++
T Consensus 89 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv-----~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 89 DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRL-----TLARALINDPQLLILDEPT 163 (303)
T ss_pred CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCC
Confidence 22111000000 000 00001111122223332211211122334444433 345567789999999
Q ss_pred eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 362 NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+.+|......+.+.|++.. .+..++.+|+
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH 193 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLARGKTILLTTH 193 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 8999888777777777654 3456666665
No 335
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=2.5e-08 Score=92.86 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCCc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 293 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~i 293 (423)
..++|+++.+ .++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+..-+.+.
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 84 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-----------PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVY 84 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-----------CCCccEEEECCCccccchHHHHhheEEecCCCccc
Confidence 5678899888 99999999999999999999972 23334444433211 112222222
Q ss_pred CCccccccchH--HHH----H-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAHENRGLGH--AFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~~~~~l~~--~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
........+.. .+. . ..+.+..++..+++....+......+..+.+++ .++.++...|.++++ +
T Consensus 85 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 85 PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRV-----GIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCcc
Confidence 21110000000 000 0 001111112222222111111112333443333 345577789999998 8
Q ss_pred CCCcCChHHHHHHHHHHcCCCcEEEEec
Q 014494 363 KIDEDGAEEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~~~~~ii~vSA 390 (423)
.+|......+.+.|.+.....+++.+|+
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~tii~vsH 187 (211)
T cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTH 187 (211)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 8888777777777777654556666664
No 336
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.74 E-value=3.7e-08 Score=91.94 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=80.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-----------EEEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------ITVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-----------i~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++|||||||+++|+|..+ |..|.+.+++.. ..+...|.+..
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----------~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----------PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----------CCCcEEEECCEEcccCChhccceEEEeccCccCC
Confidence 47899999999999999999999999999999732 333433333311 12233334332
Q ss_pred CccccccchHHHH-------HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAHENRGLGHAFL-------RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~~~~~l~~~fl-------~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
..+....+...+. .....+..++-.+++.+..+......+..+.+++ .++.++...|.++++ +-
T Consensus 84 ~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl-----~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRV-----ALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHH-----HHHHHHhcCCCEEEEcCCCcc
Confidence 1111000100000 0000111111222222211111122344444443 234566789999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|.+... +..++.+|+.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 888777777777776542 4567777754
No 337
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.74 E-value=2.9e-08 Score=95.63 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=80.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--------EEEEcCCCCcCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGA 296 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--------i~l~DtpG~i~~a 296 (423)
-..++|++..+..++|+|++|||||||++.|+|.. .|..|.+.+++.. ..+.+.+.+....
T Consensus 28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~ 96 (257)
T PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-----------TPSAGELLAGTAPLAEAREDTRLMFQDARLLPWK 96 (257)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCeEEEECCEEHHHhhCceEEEecCccCCCCC
Confidence 35688999999999999999999999999999973 2333444433311 1223333333211
Q ss_pred cccccchHHHH-HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHH
Q 014494 297 HENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEE 371 (423)
Q Consensus 297 ~~~~~l~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~ 371 (423)
.....+...+. ..-.++.-++-.+.+....+......+..+.+++ .++.++...|.++++ +.+|......
T Consensus 97 tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl-----~laraL~~~p~lllLDEPt~~LD~~~~~~ 171 (257)
T PRK11247 97 KVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRV-----ALARALIHRPGLLLLDEPLGALDALTRIE 171 (257)
T ss_pred cHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 10000000000 0001111111112222211111122344444443 344566789999998 8888877777
Q ss_pred HHHHHHHHc--CCCcEEEEecc
Q 014494 372 VYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 372 ~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+.+.|.+.. .+..++.+|+.
T Consensus 172 l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 172 MQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCC
Confidence 777776653 24566767653
No 338
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.73 E-value=1.5e-08 Score=93.93 Aligned_cols=151 Identities=21% Similarity=0.166 Sum_probs=78.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE----------EEEcCCC--C
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------TVADIPG--L 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i----------~l~DtpG--~ 292 (423)
-..++|++..+..++|+|++|||||||++.|+|.. .|..|.+.+++..+ .+.+.|. +
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~ 84 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-----------KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQL 84 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEEhhhHHhhcceEEEecChhhhh
Confidence 45688999999999999999999999999999973 23344444443221 1111111 0
Q ss_pred cC-CccccccchHHHHH-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCc
Q 014494 293 IK-GAHENRGLGHAFLR-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDE 366 (423)
Q Consensus 293 i~-~a~~~~~l~~~fl~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl 366 (423)
.. ...++..+...... ...++.-++-.+++.+..+......+..+.+++ .++.++...|.++++ +.+|.
T Consensus 85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-----~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 85 FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRL-----AIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHH-----HHHHHHHhCCCEEEEeCCCccCCH
Confidence 00 00000000000000 000111111111222111111112344444443 344566789999998 88888
Q ss_pred CChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 367 DGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 367 ~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
...+.+.+.|.+.. .+..++.+|+.
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~ 185 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHD 185 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 77777777776653 34566766653
No 339
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=3.5e-08 Score=94.93 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=80.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--------EEEEcCCCCcCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGA 296 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--------i~l~DtpG~i~~a 296 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++.. ..+...+.+....
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~ 85 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-----------PYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWR 85 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCEECCCCCCcEEEEeCCCccCCCC
Confidence 36788999999999999999999999999999973 2333444333311 1222333332211
Q ss_pred c--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 297 H--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 297 ~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
. ++..+...+ .....++.-++-.+++....+......+..+.+++ .++.++...|.++++ +-+|
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl-----~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV-----GIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCccCC
Confidence 1 000000000 00000111111122222111111112334444443 344566789999998 8888
Q ss_pred cCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 366 EDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 366 l~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
......+.+.|.+.. .+..++.+|+.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 877777777777653 25567777753
No 340
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.73 E-value=1.7e-08 Score=95.54 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=80.1
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee--------EEEEcCCCCcCCccc
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ--------ITVADIPGLIKGAHE 298 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~--------i~l~DtpG~i~~a~~ 298 (423)
.++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++.. ..+.+.+.+......
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv 71 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-----------QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTV 71 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCceEEECCEECCCCChhheEEecCcccCCCCCH
Confidence 467889999999999999999999999999973 2334444444321 233334443331111
Q ss_pred cccchHHHH---------HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 299 NRGLGHAFL---------RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 299 ~~~l~~~fl---------~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
...+...+. .....+..++..+++....+......+..+.+++ .+..++...|.++++ +.+|
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRV-----AIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCCCcCCC
Confidence 000000000 0000111112222222211111112334444433 344567789999998 8888
Q ss_pred cCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 366 EDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 366 l~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
......+.+.|.+... +..++.+|+.
T Consensus 147 ~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8777777777776542 4567777653
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.6e-07 Score=89.71 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=102.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCC-----C------CCC-----cccceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKP-----A------VGH-----YSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~-----~------i~~-----~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
+..-+|+.||+-+-|||||..+|+..-. . +.+ ....|+.+..-.+...++.+..+|+||+.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH--
Confidence 3445899999999999999999975311 0 111 224666666666666778999999999865
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-eCCCcCChHHHHH-
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-NKIDEDGAEEVYE- 374 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-NKiDl~~~~~~~~- 374 (423)
+...++......|..|+|+.+.+... |...-..++. + ....|.|+|+ ||+|+.+..+.++
T Consensus 88 -----YvKNMItgAaqmDgAILVVsA~dGpm------PqTrEHiLla------r-qvGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 88 -----YVKNMITGAAQMDGAILVVAATDGPM------PQTREHILLA------R-QVGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred -----HHHHHhhhHHhcCccEEEEEcCCCCC------Ccchhhhhhh------h-hcCCcEEEEEEecccccCcHHHHHH
Confidence 56666666777899999999887321 1111111111 1 1256766665 9999998554332
Q ss_pred ------HHHHHc----CCCcEEEEecccC--------cCHHHHHHHHHHHhccccCC
Q 014494 375 ------ELERRV----QGVPIYPVCAVLE--------EGVPELKVGLRMLVNGEKSE 413 (423)
Q Consensus 375 ------~l~~~~----~~~~ii~vSA~~g--------~gi~eL~~~i~~~l~~~~~~ 413 (423)
.|.+.+ .+.|++.-||+.. ..|.+|++.+..+++....+
T Consensus 150 VemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 150 VEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred HHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 222222 2567777777532 23567777777777655443
No 342
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.72 E-value=3.5e-08 Score=92.01 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3668899999999999999999999999999997
No 343
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.72 E-value=2.3e-08 Score=93.09 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=31.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 568889999999999999999999999999997
No 344
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.72 E-value=4.6e-08 Score=90.25 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=79.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~ 292 (423)
-..++|++..+..++|+|++|||||||++.|+|..+ |..|.+.+++..+ .+.+.+.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----------~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----------PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGL 84 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----------CCccEEEECCEEcccchHHhhhheEEeccCccc
Confidence 356889999999999999999999999999999732 2334443333211 11222222
Q ss_pred cCCcc--ccccchHHHHH-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCC
Q 014494 293 IKGAH--ENRGLGHAFLR-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKID 365 (423)
Q Consensus 293 i~~a~--~~~~l~~~fl~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiD 365 (423)
..... ++..+...+.. ....+..++..+++....+......+..+.+++ .++.++...|.++++ +-+|
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv-----~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 85 KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRL-----ALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHH-----HHHHHHhcCCCEEEEeCCCcCCC
Confidence 21111 00000000000 000111111112222111111112233333333 345567789999999 8888
Q ss_pred cCChHHHHHHHHHHc-CCCcEEEEeccc
Q 014494 366 EDGAEEVYEELERRV-QGVPIYPVCAVL 392 (423)
Q Consensus 366 l~~~~~~~~~l~~~~-~~~~ii~vSA~~ 392 (423)
......+.+.|.+.. .+..++.+|+..
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 877777777776643 355677777644
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.72 E-value=2.4e-08 Score=90.39 Aligned_cols=55 Identities=31% Similarity=0.537 Sum_probs=45.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~ 292 (423)
...|+++|.||+|||||+|+|++.+. .++++|++|....... + +..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~-~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--L-DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--e-CCCEEEEECcCC
Confidence 35899999999999999999999765 6889999997654433 3 347899999995
No 346
>PRK10908 cell division protein FtsE; Provisional
Probab=98.72 E-value=2.9e-08 Score=93.28 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999999999999997
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.72 E-value=5.6e-08 Score=87.05 Aligned_cols=120 Identities=20% Similarity=0.283 Sum_probs=79.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|+++.+..++|+|++|+|||||++.|+|. ..|..|.+.+++..+.-. . .
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~------~---------~ 69 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFA------S---------P 69 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcC------C---------H
Confidence 3568899999999999999999999999999997 446678777776432110 0 0
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~ 380 (423)
..... ..+-++.++|. .+.+++ .++.++...|.++++ +.+|......+.+.+++..
T Consensus 70 --~~~~~--~~i~~~~qLS~-----------G~~qrl-----~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 70 --RDARR--AGIAMVYQLSV-----------GERQMV-----EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred --HHHHh--cCeEEEEecCH-----------HHHHHH-----HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 00111 12445555443 444443 234466788999998 7888877777777777654
Q ss_pred -CCCcEEEEec
Q 014494 381 -QGVPIYPVCA 390 (423)
Q Consensus 381 -~~~~ii~vSA 390 (423)
.+..++.+|+
T Consensus 130 ~~~~tiii~sh 140 (163)
T cd03216 130 AQGVAVIFISH 140 (163)
T ss_pred HCCCEEEEEeC
Confidence 3455666664
No 348
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.71 E-value=3.8e-08 Score=91.33 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 349
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=4.9e-08 Score=98.14 Aligned_cols=150 Identities=22% Similarity=0.223 Sum_probs=86.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|. ..|..|.+.+++..+ .+...+.+..
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 91 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFP 91 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 568899999999999999999999999999997 334555555554211 2233333333
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++..+ ....++++-++..+.+....+......+..+.+++ .++++|...|.++++ +-
T Consensus 92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRV-----aLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRV-----ALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCCccc
Confidence 211 111111100 00011222233333333322222223445555544 345677889999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|.....++.+.|++... +.+++.+|+.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 887777777776766542 5678888763
No 350
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=2.4e-08 Score=93.68 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=78.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCCc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGLI 293 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~i 293 (423)
..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+...+.+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-----------~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-----------KPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 5688999999999999999999999999999972 22333333333111 112222222
Q ss_pred CCccc--cccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAHE--NRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~~--~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
..... +..+...+ ....+.++.++..+++....+......+..+.+++ .++.++...|.++++ +
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~-----~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRL-----EIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCcc
Confidence 11110 00000000 00011122222223332211111122344444433 344567789999998 8
Q ss_pred CCCcCChHHHHHHHHHHcC--CCcEEEEec
Q 014494 363 KIDEDGAEEVYEELERRVQ--GVPIYPVCA 390 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~~--~~~ii~vSA 390 (423)
-+|......+.+.|.+... +..++.+|+
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 8888777777777766542 456776665
No 351
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.71 E-value=2.3e-08 Score=93.17 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=31.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||+++|+|..
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999999999973
No 352
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.71 E-value=3.3e-08 Score=92.16 Aligned_cols=34 Identities=35% Similarity=0.324 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999999999999997
No 353
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=1.5e-08 Score=94.88 Aligned_cols=161 Identities=21% Similarity=0.279 Sum_probs=90.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcC-CCCcCCcc--ccccc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADI-PGLIKGAH--ENRGL 302 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~Dt-pG~i~~a~--~~~~l 302 (423)
++++|++..+..|||||.||||||||++.|+|. +.|+.|.+...+.-.-+++. .||..... ++..+
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccchHHHHHH
Confidence 568899999999999999999999999999997 77888999888744434443 34433221 11112
Q ss_pred hHHHH----HHH-hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHH
Q 014494 303 GHAFL----RHI-ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVY 373 (423)
Q Consensus 303 ~~~fl----~~i-~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~ 373 (423)
...++ +.+ +..+-++-.-++-+..+ .|...+..-+..-..++-+..-.|.|+++.-+=-+.. +...
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~-----~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFID-----QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhh-----CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 11121 011 11222222222222222 3344444443333345556667899999743322222 2334
Q ss_pred HHHHHHc-CCCcEEEEecccCcCHHHHHHHH
Q 014494 374 EELERRV-QGVPIYPVCAVLEEGVPELKVGL 403 (423)
Q Consensus 374 ~~l~~~~-~~~~ii~vSA~~g~gi~eL~~~i 403 (423)
+.+.++. .+..+++||+-.+. |.++|+.+
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~-I~~~Cd~~ 217 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGA-IKQYCDRA 217 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHH-HHHhcCee
Confidence 4555552 45678888874433 55555543
No 354
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=5.2e-08 Score=98.19 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=85.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|. ..|..|.+.+++..+ .+...+.+..
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp 89 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYP 89 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCccccC
Confidence 468899999999999999999999999999997 334455555554211 1222222322
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++... .....+++-++-.+++.+..+......+..+.+++ .+++++...|.++++ +.
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRv-----alARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV-----AMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 111 111111000 00011122223333333322222223445554444 455678899999998 88
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.+++.+|+.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 888777777777766542 5678888864
No 355
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.70 E-value=6.3e-08 Score=92.11 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 356
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=2.8e-08 Score=94.04 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||+++|+|..
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578899999999999999999999999999973
No 357
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.70 E-value=3.3e-08 Score=93.16 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=83.2
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEc-CCCCcCCccccccc
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVAD-IPGLIKGAHENRGL 302 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~D-tpG~i~~a~~~~~l 302 (423)
--..++|++..+..++|+|++|||||||+++|+|. ..|..|.+.+++..+.... ..++.........+
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl 105 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENI 105 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhcccccCCCCCcHHHHH
Confidence 34678999999999999999999999999999997 3455677777664432221 12222111100000
Q ss_pred --hHHH----HHH-HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHH
Q 014494 303 --GHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEE 371 (423)
Q Consensus 303 --~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~ 371 (423)
...+ ... .+.+..++..+.+....+......+..+.+++ .++.++...|.++++ +-+|......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~laral~~~p~llllDEP~~gLD~~~~~~ 180 (224)
T cd03220 106 YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARL-----AFAIATALEPDILLIDEVLAVGDAAFQEK 180 (224)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0000 000 00111111122222211111112334444433 344566789999998 8888877777
Q ss_pred HHHHHHHHc-CCCcEEEEecc
Q 014494 372 VYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 372 ~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+.+.+.+.. .+..++.+|+.
T Consensus 181 ~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 181 CQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHHHHhCCCEEEEEeCC
Confidence 777776654 33566666653
No 358
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.70 E-value=7.3e-08 Score=91.42 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=31.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 359
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.70 E-value=7.1e-08 Score=90.41 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=31.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 360
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.69 E-value=3e-08 Score=93.66 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999999999997
No 361
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.69 E-value=6.5e-08 Score=91.17 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=31.3
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999999999999999997
No 362
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.69 E-value=2.4e-08 Score=93.46 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999999999997
No 363
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.69 E-value=6.5e-08 Score=88.64 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=30.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999999997
No 364
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.69 E-value=8.1e-08 Score=88.99 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=31.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999999999999997
No 365
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=8.3e-08 Score=90.85 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999999999999997
No 366
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.68 E-value=3.6e-08 Score=95.35 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=79.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH-
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH- 304 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~- 304 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..-.+...+++.........+..
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHH
Confidence 568899999999999999999999999999997 33445656555532122223333221110000000
Q ss_pred -H---H--HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHH
Q 014494 305 -A---F--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 374 (423)
Q Consensus 305 -~---f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~ 374 (423)
. + ......++.++..+++....+......+..+.+++. ++.++...|.|+++ +.+|......+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~-----Laral~~~p~iLlLDEPt~gLD~~~~~~l~~ 184 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG-----FSINITVNPDILVIDEALSVGDQTFAQKCLD 184 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH-----HHHHHhhCCCEEEEeCccccCCHHHHHHHHH
Confidence 0 0 000000011111111111111111234455555443 34466788999998 7888776666666
Q ss_pred HHHHHc-CCCcEEEEec
Q 014494 375 ELERRV-QGVPIYPVCA 390 (423)
Q Consensus 375 ~l~~~~-~~~~ii~vSA 390 (423)
.+.+.. .+..++.+|+
T Consensus 185 ~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 185 KIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHCCCEEEEEcC
Confidence 665543 3456666665
No 367
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.68 E-value=3.9e-08 Score=91.97 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=31.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|+|||||++.|+|.
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 27 FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999999999999997
No 368
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.67 E-value=3.7e-08 Score=93.30 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=30.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 457889999999999999999999999999997
No 369
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.67 E-value=6.3e-08 Score=92.03 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 370
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.67 E-value=8.7e-08 Score=96.45 Aligned_cols=150 Identities=23% Similarity=0.224 Sum_probs=87.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|. ..|..|.+.+++..+ .+..-+.+..
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp 89 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFP 89 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCC
Confidence 468899999999999999999999999999997 344556655554221 2222233332
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++... .....+++-++-.+++....+......+..+.+++ .++++|...|.++++ +.
T Consensus 90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRv-----aLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 90 NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRV-----ALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCccc
Confidence 111 111111000 00011233333344444333322223444554443 455677889999998 77
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.+++.+|+.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd 194 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHD 194 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 887777777777766542 5678888764
No 371
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.66 E-value=1.1e-07 Score=96.02 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=87.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceE--EEEEeCCeeE-----------EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL--GNMNFDDIQI-----------TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~--g~v~~~~~~i-----------~l~DtpG 291 (423)
-..++|++..+..++|+|++||||||||++|+|.. .|.. |.+.+++..+ .+..-+.
T Consensus 21 l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~ 89 (362)
T TIGR03258 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-----------KAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYA 89 (362)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCCCEEEEECCEECCCCCHHHCCEEEEECCcc
Confidence 35688999999999999999999999999999973 3333 5555544211 2223333
Q ss_pred CcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE---
Q 014494 292 LIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 361 (423)
Q Consensus 292 ~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl--- 361 (423)
+..... ++..++... .....+++-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv-----aLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI-----AIARAIAIEPDVLLLDEP 164 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCc
Confidence 332111 111111000 00011233334444554433333333445554444 456678899999998
Q ss_pred -eCCCcCChHHHHHHHHHHcC---CCcEEEEecc
Q 014494 362 -NKIDEDGAEEVYEELERRVQ---GVPIYPVCAV 391 (423)
Q Consensus 362 -NKiDl~~~~~~~~~l~~~~~---~~~ii~vSA~ 391 (423)
+-+|.....++.+.|++... +.+++.+|+.
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 88888777777777766542 4677878764
No 372
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.66 E-value=9.1e-08 Score=96.93 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=82.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|.. .|..|.+.+++..+ .+...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-----------~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-----------DITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 5688999999999999999999999999999972 33444444443211 1222222222
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++... ....+++.-++-.+.+....+......+..+.+++ .++.+|...|.++++ +-
T Consensus 89 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv-----aLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV-----AIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 111 111010000 00001122222223333222222223444554444 345677889999998 88
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.+++.+|+.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 888777777766666542 5677877763
No 373
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=5.3e-08 Score=92.68 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999999999999997
No 374
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.66 E-value=8.7e-08 Score=96.57 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=80.9
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------------EEEcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVADI 289 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------------~l~Dt 289 (423)
.++|++..+..++|+|++|||||||+++|+|..+ |..|.+.+++..+ .+...
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----------p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----------PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----------CCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 7889999999999999999999999999999732 2233333332111 22233
Q ss_pred CCCcCCcc--ccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE---
Q 014494 290 PGLIKGAH--ENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 361 (423)
Q Consensus 290 pG~i~~a~--~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl--- 361 (423)
+.+..... ++..++... .....+++-++-.+.+....+......+..+.+++ .++.++...|.++++
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRv-----alAraL~~~p~lllLDEP 158 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV-----AIGRALLSSPRLLLMDEP 158 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCC
Confidence 33332111 110000000 00001111122222332211211222344444443 345567789999998
Q ss_pred -eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 -NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 -NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+-+|......+.+.|++... +.+++.+|+.
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 88888777777777776542 4567777753
No 375
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.66 E-value=3.9e-08 Score=91.40 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999999999999997
No 376
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.66 E-value=4.8e-08 Score=94.62 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999999999999973
No 377
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.66 E-value=7.4e-08 Score=99.32 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=98.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC--CCC-cccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA--VGH-YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~--i~~-~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|.|||..|+|||||+-+|...... +-. .+-.|+. ..+.-+.....++||.--.+ -.....+.+++|
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~-------~~~~l~~EirkA 80 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSD-------DRLCLRKEIRKA 80 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccc-------hhHHHHHHHhhc
Confidence 7999999999999999999876321 211 1122222 11222235688999963322 223446789999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHH-HHHHHHhhhcccCCCCeEEEEeCCCcCChH-----HHHHHHHHHc-CCCcEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRD-LIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV-QGVPIY 386 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~-l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-----~~~~~l~~~~-~~~~ii 386 (423)
++++.++.+++. ...+.+.. |+-.+......-.+.|+|+|.||+|..... ..+.-|...+ .-.++|
T Consensus 81 ~vi~lvyavd~~-------~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtci 153 (625)
T KOG1707|consen 81 DVICLVYAVDDE-------STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCI 153 (625)
T ss_pred CEEEEEEecCCh-------HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHH
Confidence 999999988772 33444333 333333322223589999999999986432 1233333333 224689
Q ss_pred EEecccCcCHHHHHHHHHHHhc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.|||++..++.+++....+.+-
T Consensus 154 ecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 154 ECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhhhhhhhHhhhhhhhheee
Confidence 9999999999999988776653
No 378
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=4.2e-08 Score=93.13 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35678999999999999999999999999999973
No 379
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=4.2e-08 Score=91.60 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=29.7
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.++|++.. ..++|+|++|||||||++.|+|.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 78899999 99999999999999999999997
No 380
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=5.5e-08 Score=97.57 Aligned_cols=150 Identities=20% Similarity=0.269 Sum_probs=82.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE----------------EEEcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVADI 289 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i----------------~l~Dt 289 (423)
..++|+++.+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+...
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-----------~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~ 90 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-----------RPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH 90 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCC
Confidence 5789999999999999999999999999999972 33444444443211 11222
Q ss_pred CCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 290 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 290 pG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
+.+..... ++..+...+ ....+++..++-.+++.+..+......+..+.+++ .++.++...|.|+++
T Consensus 91 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv-----~lAraL~~~p~iLlLD 165 (343)
T PRK11153 91 FNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV-----AIARALASNPKVLLCD 165 (343)
T ss_pred CccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEe
Confidence 22222111 110000000 00001122222223333222222222344554444 345567789999998
Q ss_pred ---eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 ---NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+.+|......+.+.|++... +..++.+|+.
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 88888777777777776542 4567777653
No 381
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=7.6e-08 Score=87.37 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+.-++ + .
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~-~---~---------- 70 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGEDLTDLE-D---E---------- 70 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccc-h---h----------
Confidence 4668899999999999999999999999999997 3455677766654321100 0 0
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCC------CCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHH
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRK------GIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 374 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~------~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~ 374 (423)
. ..+ ...+.++.+-........ ...+..+.+++ .+..++...|.++++ +.+|......+.+
T Consensus 71 -~-~~~--~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~-----~la~al~~~p~llilDEP~~~LD~~~~~~l~~ 141 (178)
T cd03229 71 -L-PPL--RRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRV-----ALARALAMDPDVLLLDEPTSALDPITRREVRA 141 (178)
T ss_pred -H-HHH--hhcEEEEecCCccCCCCCHHHheeecCCHHHHHHH-----HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 000 011122221111000000 00122333333 334566789999998 8888877777777
Q ss_pred HHHHHcC--CCcEEEEec
Q 014494 375 ELERRVQ--GVPIYPVCA 390 (423)
Q Consensus 375 ~l~~~~~--~~~ii~vSA 390 (423)
.|.+... +..++.+|+
T Consensus 142 ~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 142 LLKSLQAQLGITVVLVTH 159 (178)
T ss_pred HHHHHHHhcCCEEEEEeC
Confidence 7766543 355666665
No 382
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.64 E-value=4.8e-08 Score=99.76 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=81.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|+++.+..++|+|+|||||||||++|+|. +.|..|.+.+++.. + ++...+.
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~ 87 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQDTS 87 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCC
Confidence 4678999999999999999999999999999997 23333444443311 1 1111122
Q ss_pred CcCCcc--ccccchH-----HH----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGAH--ENRGLGH-----AF----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a~--~~~~l~~-----~f----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+....+ ++..++. .| ....+.++-++..+++.+..+......+..+.+++ .++.+|...|.|++
T Consensus 88 l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv-----~IArAL~~~P~iLL 162 (402)
T PRK09536 88 LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV-----LLARALAQATPVLL 162 (402)
T ss_pred CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEE
Confidence 111000 0000000 00 00011122223333333222211222344444443 34567788999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 361 A----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+ +.+|.....++++.|+++. .+..++.+|+
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsH 197 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 9 8999887777777777664 3556666665
No 383
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.64 E-value=1.5e-07 Score=89.97 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35688999999999999999999999999999973
No 384
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.1e-07 Score=89.17 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=83.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcc------cc---e---ecceEEEEEe------CC----ee
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYS------FT---T---LRPNLGNMNF------DD----IQ 283 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~------ft---T---l~~~~g~v~~------~~----~~ 283 (423)
..+++.+..+.+++|+|+|||||||||+.+++..+..+... |- | +...+|.+.- .. ..
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~d 127 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRD 127 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccce
Confidence 34677888888999999999999999999999866532211 00 0 0011111100 00 01
Q ss_pred EE---EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 284 IT---VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 284 i~---l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
++ +.++.|+.... +... ....|..++-.+-+.+..+ .++..+..-...+..+++++...|.+++
T Consensus 128 vVlSg~~~siG~y~~~-----~~~~---~~~~a~~lle~~g~~~la~-----r~~~~LS~Ge~rrvLiaRALv~~P~LLi 194 (257)
T COG1119 128 VVLSGFFASIGIYQED-----LTAE---DLAAAQWLLELLGAKHLAD-----RPFGSLSQGEQRRVLIARALVKDPELLI 194 (257)
T ss_pred eeeecccccccccccC-----CCHH---HHHHHHHHHHHcchhhhcc-----CchhhcCHhHHHHHHHHHHHhcCCCEEE
Confidence 11 12233332200 0000 0111111111111111111 2333333333334446678899999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc---CCCcEEEEecccC
Q 014494 361 A----NKIDEDGAEEVYEELERRV---QGVPIYPVCAVLE 393 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~---~~~~ii~vSA~~g 393 (423)
+ |.+|+...+...+.|.+.. +...+++||++..
T Consensus 195 LDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 195 LDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred ecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 9 9999998888777777766 3556889998643
No 385
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.64 E-value=1.3e-07 Score=94.66 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=84.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEE----------------EEc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT----------------VAD 288 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~----------------l~D 288 (423)
-..++|++..+..++|+|++|||||||+++|++.. .|..|.+.+++..+. +..
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-----------~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q 89 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-----------RPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQ 89 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCceEEEECCEECCcCCHHHHHHHhcCEEEEEC
Confidence 46789999999999999999999999999999973 344455554442211 111
Q ss_pred CCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 289 IPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 289 tpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.+.+..... ++..+.... ....+++.-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV-----~IARAL~~~P~iLLl 164 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV-----AIARALASNPKVLLC 164 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHhCCCEEEE
Confidence 122221100 000000000 00001112222233333322222223445555444 345677889999998
Q ss_pred ----eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+-+|......+++.|++... +.+++.+|+.
T Consensus 165 DEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 165 DEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 88888777777777776542 5677777763
No 386
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.8e-07 Score=90.42 Aligned_cols=131 Identities=22% Similarity=0.333 Sum_probs=88.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC---CCCCcccceec------ceEE-------EEE----e------------
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP---AVGHYSFTTLR------PNLG-------NMN----F------------ 279 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~---~i~~~~ftTl~------~~~g-------~v~----~------------ 279 (423)
+...+-|.++|.-..||||+|+.|+.... .++..|.|-.. +..+ .+. +
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 45667899999999999999999987632 23333321100 0000 000 0
Q ss_pred -------CC---eeEEEEcCCCCcCCccccccchHHHHH----HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHH
Q 014494 280 -------DD---IQITVADIPGLIKGAHENRGLGHAFLR----HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIEL 345 (423)
Q Consensus 280 -------~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~----~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL 345 (423)
++ .++.++||||+.++..+...-+..|-. .+++||.|++++|... .+...++..++..|
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK-------LDIsdEf~~vi~aL 207 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK-------LDISDEFKRVIDAL 207 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh-------ccccHHHHHHHHHh
Confidence 00 268999999999987765444444422 3689999999999875 35566778887777
Q ss_pred HhhhcccCCCCeEEEEeCCCcCChHHHHH
Q 014494 346 EHHQEGLSDRPSLVVANKIDEDGAEEVYE 374 (423)
Q Consensus 346 ~~~~~~l~~~P~IiVlNKiDl~~~~~~~~ 374 (423)
... ...+-||+||.|.++.++.+.
T Consensus 208 kG~-----EdkiRVVLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 208 KGH-----EDKIRVVLNKADQVDTQQLMR 231 (532)
T ss_pred hCC-----cceeEEEeccccccCHHHHHH
Confidence 542 567788999999998876543
No 387
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=7.7e-08 Score=91.03 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=31.2
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.++|++..+..++|+|++|||||||++.|+|..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999999999999973
No 388
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.63 E-value=4.4e-08 Score=91.83 Aligned_cols=34 Identities=32% Similarity=0.284 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999999999999999997
No 389
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.63 E-value=3.1e-08 Score=92.42 Aligned_cols=33 Identities=39% Similarity=0.435 Sum_probs=31.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 567889999999999999999999999999997
No 390
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.63 E-value=1.3e-07 Score=95.32 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=82.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 293 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i 293 (423)
-..++|++..+..++|+|++||||||||++|+|..+ |..|.+.+++..+ .+..-+.+.
T Consensus 18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----------p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~ 86 (353)
T PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----------QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALF 86 (353)
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----------CCCcEEEECCEECCCCCHHHCCEEEEecCcccC
Confidence 356899999999999999999999999999999732 3334443333111 112222222
Q ss_pred CCcc--ccccchHHH---------HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 294 KGAH--ENRGLGHAF---------LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 294 ~~a~--~~~~l~~~f---------l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
.... ++..++... ....+++.-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 87 p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv-----alArAL~~~P~llLLD 161 (353)
T PRK10851 87 RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV-----ALARALAVEPQILLLD 161 (353)
T ss_pred CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEe
Confidence 2111 010000000 00011222223333333322222223344444443 455677899999998
Q ss_pred ---eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 ---NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+-+|......+.+.|++... +.+++.+|+.
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 88887777777777766542 4677777763
No 391
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=1e-07 Score=87.76 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=30.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999999999999999999999997
No 392
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.62 E-value=5.5e-08 Score=88.44 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=80.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|++..+..++|+|++|+|||||++.|+|. +.|..|.+.+++..+.-++..-. ....++..
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~----~~~i~~~~ 79 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKEL----ARKIAYVP 79 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHH----HHHHhHHH
Confidence 3568899999999999999999999999999997 44667877777653321111000 00011111
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~ 380 (423)
++++.+.-.+ ..+. .....+..+.+++. +..++...|.++++ +.+|....+.+.+.+.+..
T Consensus 80 q~l~~~gl~~----~~~~------~~~~LS~G~~qrl~-----laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 80 QALELLGLAH----LADR------PFNELSGGERQRVL-----LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred HHHHHcCCHh----HhcC------CcccCCHHHHHHHH-----HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 1111111000 0010 01123444444442 34566789999998 7888777777667666654
Q ss_pred C--CCcEEEEecc
Q 014494 381 Q--GVPIYPVCAV 391 (423)
Q Consensus 381 ~--~~~ii~vSA~ 391 (423)
. +..++.+|+.
T Consensus 145 ~~~~~tiii~sh~ 157 (180)
T cd03214 145 RERGKTVVMVLHD 157 (180)
T ss_pred HhcCCEEEEEeCC
Confidence 3 4566766653
No 393
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=9.5e-08 Score=92.86 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.5
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
--+.++|+++.+..++|+|++|||||||+++|+|.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999999999999997
No 394
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=8.2e-08 Score=93.58 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=81.7
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-------------EEEcCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIP 290 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-------------~l~Dtp 290 (423)
--..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+...|
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 34678999999999999999999999999999997 234445444444211 111111
Q ss_pred -CCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 291 -GLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 291 -G~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
.+..... ++..+.... ....++++-++..+++....+......+..+.+++ .+..++...|.|+++
T Consensus 91 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv-----~laral~~~p~lllLD 165 (279)
T PRK13635 91 DNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV-----AIAGVLALQPDIIILD 165 (279)
T ss_pred HHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH-----HHHHHHHcCCCEEEEe
Confidence 0110000 000000000 00001122222222332222212222344444433 344567789999998
Q ss_pred ---eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 ---NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+.+|......+.+.|.+... +..++.+|+.
T Consensus 166 EPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 166 EATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 88888877777777776552 4566766653
No 395
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=7.8e-08 Score=93.20 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999999999999999999973
No 396
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=1.3e-07 Score=90.15 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568899999999999999999999999999997
No 397
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.62 E-value=1.7e-07 Score=90.01 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=79.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-eE-EEEcCCCCcCCccccccc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-QI-TVADIPGLIKGAHENRGL 302 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-~i-~l~DtpG~i~~a~~~~~l 302 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++. .+ .+...+.+...... .+
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~--~~ 86 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPL--TV 86 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCccCEEEeccccccccccCh--hH
Confidence 4578899999999999999999999999999997 3344555555431 11 12222322211000 00
Q ss_pred hHHHHHH-----HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHH
Q 014494 303 GHAFLRH-----IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVY 373 (423)
Q Consensus 303 ~~~fl~~-----i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~ 373 (423)
..++.. .+.+..++-.+++.+..+......+..+.+++ .++.++...|.++++ +.+|......+.
T Consensus 87 -~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv-----~laral~~~p~lllLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 87 -NRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRV-----LLARALLNRPQLLVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred -HHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 001000 00000011111221111111112333444333 344567789999998 888887777777
Q ss_pred HHHHHHcC--CCcEEEEecc
Q 014494 374 EELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 374 ~~l~~~~~--~~~ii~vSA~ 391 (423)
+.|.+... +..++.+|+.
T Consensus 161 ~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 161 DLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHHhcCCEEEEEecC
Confidence 76765542 4567777754
No 398
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.62 E-value=3.6e-07 Score=80.14 Aligned_cols=107 Identities=26% Similarity=0.352 Sum_probs=72.5
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG 303 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~ 303 (423)
.-..++|+++.+..++|+|++|+|||||+++|+|. +.|..|.+.+++..
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~~-------------------- 63 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGSTV-------------------- 63 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCeE--------------------
Confidence 34678899999999999999999999999999997 44566777766520
Q ss_pred HHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHH
Q 014494 304 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERR 379 (423)
Q Consensus 304 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~ 379 (423)
.+.++..+| ..+.+++. ++.++...|.++++ +.+|......+.+.+++.
T Consensus 64 -----------~i~~~~~lS-----------~G~~~rv~-----laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 64 -----------KIGYFEQLS-----------GGEKMRLA-----LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred -----------EEEEEccCC-----------HHHHHHHH-----HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 111222233 23333332 33456678888888 778877766666667654
Q ss_pred cCCCcEEEEec
Q 014494 380 VQGVPIYPVCA 390 (423)
Q Consensus 380 ~~~~~ii~vSA 390 (423)
...++.+|+
T Consensus 117 --~~til~~th 125 (144)
T cd03221 117 --PGTVILVSH 125 (144)
T ss_pred --CCEEEEEEC
Confidence 345666664
No 399
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=4.2e-08 Score=94.79 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 36688999999999999999999999999999973
No 400
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.61 E-value=9.7e-08 Score=91.27 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=31.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999999999999997
No 401
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.61 E-value=1.3e-07 Score=90.58 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 402
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.61 E-value=5.5e-08 Score=92.54 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=31.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||+++|+|..
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678999999999999999999999999999973
No 403
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.61 E-value=2.1e-07 Score=93.92 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=89.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-----------------EEEE
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------------ITVA 287 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-----------------i~l~ 287 (423)
-..++|++..+..++|+|++|||||||+++|+|. ..|+.|.+.+++.. ..+.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 4678999999999999999999999999999998 33455555554421 1223
Q ss_pred cCCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 288 DIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 288 DtpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
.-+++..... ++..++..+ ....+++.-++-.+++....+......+..+.+++ .++++|...|.|++
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV-----~lARAL~~~p~iLL 152 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRV-----GLARALAAEPDILL 152 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEE
Confidence 3444443211 111111111 00112222333344443322222223445554444 34567788999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+ .-+|......+.+.+.+.. .+.+++++|+.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd 189 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8 7888777777777666553 25678888863
No 404
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=9.9e-08 Score=92.98 Aligned_cols=149 Identities=16% Similarity=0.212 Sum_probs=81.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-------------EEEcCC-
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIP- 290 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-------------~l~Dtp- 290 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+.+-|
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 91 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-----------EAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPD 91 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEECCcCcHHHHHhhceEEEcChH
Confidence 46788999999999999999999999999999972 33344444443211 111111
Q ss_pred CCcCCcc--ccc-------cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 291 GLIKGAH--ENR-------GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 291 G~i~~a~--~~~-------~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.++.... ++. ++.... ..+++.-++..+++.+..+......+..+.+++ .++.++...|.++++
T Consensus 92 ~~~~~~tv~eni~~~~~~~~~~~~~--~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv-----~lAral~~~p~lLlL 164 (279)
T PRK13650 92 NQFVGATVEDDVAFGLENKGIPHEE--MKERVNEALELVGMQDFKEREPARLSGGQKQRV-----AIAGAVAMRPKIIIL 164 (279)
T ss_pred HhcccccHHHHHHhhHHhCCCCHHH--HHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 1110000 000 000000 001112122222333222222223344444443 345567789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+-+|......+.+.|.+... +.+++.+|+.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 165 DEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 88888777777777766542 5677777764
No 405
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=1.7e-07 Score=95.08 Aligned_cols=150 Identities=18% Similarity=0.217 Sum_probs=83.6
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|.. .|..|.+.+++..+ .+...+.+..
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-----------~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp 104 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-----------QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFP 104 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEeCCCccCC
Confidence 4688999999999999999999999999999973 34445555544221 1222333332
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
..+ ++..++... ....+++.-++-.+.+.+..+......+..+.+++ .++++|...|.++++ +-
T Consensus 105 ~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRV-----aLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 105 HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRV-----ALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCccc
Confidence 211 111111000 00011122223333333222222223444554444 455677899999998 78
Q ss_pred CCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+|......+.+.|.+.. .+.+++.+|+.
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 88776666665555543 25678888763
No 406
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=1.4e-07 Score=87.65 Aligned_cols=34 Identities=32% Similarity=0.308 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 407
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.3e-07 Score=91.83 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=80.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-------------EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-------------~l~DtpG 291 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+...|.
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 89 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-----------LPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPD 89 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCceEEEECCEECCCCCHHHHHhhEEEEecChh
Confidence 46788999999999999999999999999999972 33445554444211 1111111
Q ss_pred -CcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE--
Q 014494 292 -LIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 361 (423)
Q Consensus 292 -~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-- 361 (423)
.+.... ++..++... ....++++-++..+.+....+......+..+.+++ .++.++...|.++++
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv-----~laraL~~~p~llllDE 164 (274)
T PRK13647 90 DQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV-----AIAGVLAMDPDVIVLDE 164 (274)
T ss_pred hhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEEC
Confidence 000000 000000000 00001111112222222211211222344444433 345677889999998
Q ss_pred --eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 362 --NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 362 --NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+-+|......+.+.|.+.. .+.+++.+|+.
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~ 197 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 7888877777777776654 35677777753
No 408
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.60 E-value=8.5e-08 Score=91.16 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 409
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=1.9e-07 Score=95.39 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=84.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee----------------E-EEE
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ----------------I-TVA 287 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~----------------i-~l~ 287 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++.. + .+.
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-----------~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-----------EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-----------CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 46789999999999999999999999999999973 2333444433311 1 222
Q ss_pred cCCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 288 DIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 288 DtpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
..+++..... ++..+...+ ....++++-++-.+.+....+......+..+.+++ .++.++...|.|++
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv-----~LArAL~~~P~iLL 187 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRV-----GLARALAINPDILL 187 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHH-----HHHHHHhcCCCEEE
Confidence 3333332111 111110000 00011122222233333222222223445555444 34556778999999
Q ss_pred E----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.|.+.. .+.+++++|+.
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 8 8888777777777776653 25567777763
No 410
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.60 E-value=1.7e-07 Score=95.00 Aligned_cols=150 Identities=20% Similarity=0.222 Sum_probs=84.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|.. .|..|.+.+++..+ .+..-+.+..
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-----------~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp 99 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-----------TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFP 99 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHCCEEEEecCcccCC
Confidence 4688999999999999999999999999999973 34445555554221 1111222222
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++... ....++++-++-.+.+....+......+..+.+++ .++++|...|.++++ +-
T Consensus 100 ~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRV-----aLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 100 HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRV-----AIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCCCc
Confidence 111 111111000 00011222223333443322222223344444443 455677889999998 77
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.++|.||+.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 887766777677766542 5678888874
No 411
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=7e-08 Score=85.69 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=42.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~ 292 (423)
.|+++|.||+|||||+|+|.+... .+++++.+|.... .+.. +..+.++||||+
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~liDtPGi 157 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MKRIYLIDCPGV 157 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CCCEEEEECcCC
Confidence 789999999999999999998654 6788898886543 2333 346899999995
No 412
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.60 E-value=6.6e-08 Score=89.54 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=31.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||++.|+|..
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999999973
No 413
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=1.4e-07 Score=92.24 Aligned_cols=151 Identities=20% Similarity=0.222 Sum_probs=81.7
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------------EE
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TV 286 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------------~l 286 (423)
--..++|++..+..++|+|++|||||||+++|+|.. .|+.|.+.+++..+ .+
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-----------~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 90 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-----------KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMV 90 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CCCCcEEEECCEECccccccchHHHHHhheEEE
Confidence 346789999999999999999999999999999972 33344444433211 11
Q ss_pred EcCC--CCcC-CccccccchHHH-----HHHHhccceeEEEEecC-CCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 287 ADIP--GLIK-GAHENRGLGHAF-----LRHIERTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 287 ~Dtp--G~i~-~a~~~~~l~~~f-----l~~i~~ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
...| .+.. ...++..++... ....+++.-++..+++. ...+......+..+.+++ .++.++...|.
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv-----~laraL~~~p~ 165 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI-----AIVSILAMNPD 165 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH-----HHHHHHHhCCC
Confidence 1111 1111 000000000000 00111222222233332 111112223444554443 34556778999
Q ss_pred EEEE----eCCCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 358 LVVA----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 358 IiVl----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
|+++ +-+|......+.+.+.+.. .+.+++.+|+
T Consensus 166 illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH 204 (286)
T PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204 (286)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 9998 8888877777777776653 2567777775
No 414
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.59 E-value=1.6e-07 Score=94.60 Aligned_cols=150 Identities=20% Similarity=0.242 Sum_probs=81.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------------EEEc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVAD 288 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------------~l~D 288 (423)
..++|++..+..++|+|++|||||||+++|+|.. .|..|.+.+++..+ .+..
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-----------~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-----------RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 4789999999999999999999999999999973 23333333332111 1122
Q ss_pred CCCCcCCccccccchHHHH-HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 289 IPGLIKGAHENRGLGHAFL-RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 289 tpG~i~~a~~~~~l~~~fl-~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
.+.+.........+...+. ...++++-++-.+.+.+..+......+..+.+++ .++.++...|.++++ +-
T Consensus 84 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRv-----alaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRV-----AIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred CcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHH-----HHHHHHHcCCCEEEEcCCccc
Confidence 2232221110000000000 0001111122222332222222223445554444 345567789999998 78
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.+++.+|+.
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 887777777777766542 4677878764
No 415
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.59 E-value=9.2e-08 Score=90.09 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999999999999974
No 416
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1.9e-07 Score=84.39 Aligned_cols=129 Identities=20% Similarity=0.282 Sum_probs=75.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|++..+..++|+|++|+|||||++.|+|. ..|..|.+.+++..+. +.+ .
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~--~~~-------------~ 69 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDIK--KEP-------------E 69 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcc--cch-------------H
Confidence 3568899999999999999999999999999997 3345677766654321 000 0
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCC----CcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHH
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGI----KPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEEL 376 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~----~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l 376 (423)
.+ + ..+.++..-.......... .+..+.++ ..++.++...|.++++ +-+|......+.+.|
T Consensus 70 ----~~-~-~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr-----v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 138 (173)
T cd03230 70 ----EV-K-RRIGYLPEEPSLYENLTVRENLKLSGGMKQR-----LALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 (173)
T ss_pred ----hh-h-ccEEEEecCCccccCCcHHHHhhcCHHHHHH-----HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 00 0 1122222111100000000 11222222 2345567789999998 788877777777777
Q ss_pred HHHc-CCCcEEEEec
Q 014494 377 ERRV-QGVPIYPVCA 390 (423)
Q Consensus 377 ~~~~-~~~~ii~vSA 390 (423)
++.. .+..++.+|+
T Consensus 139 ~~~~~~g~tiii~th 153 (173)
T cd03230 139 RELKKEGKTILLSSH 153 (173)
T ss_pred HHHHHCCCEEEEECC
Confidence 7664 3345666664
No 417
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=1e-07 Score=91.42 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999999999999999997
No 418
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=7e-08 Score=94.45 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678899999999999999999999999999997
No 419
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.58 E-value=2.2e-07 Score=88.25 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=32.2
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34678899999999999999999999999999997
No 420
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=2.1e-07 Score=86.35 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=77.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE------------EEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI------------TVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i------------~l~DtpG~ 292 (423)
-..++|++..+..++|+|++|||||||++.|+|..+.. .|..|.+.+++..+ .+.+.+.+
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECccchhhhcceEEEEeccccc
Confidence 36788999999999999999999999999999973210 03445555544321 11111222
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCC
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDG 368 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~ 368 (423)
..... + ...+....... .. ......+..+.+++ .++.++...|.++++ +.+|...
T Consensus 95 ~~~~t----v-~~~l~~~~~~~-------~~----~~~~~LS~Ge~qrl-----~laral~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 95 FPTLT----V-RETLDFALRCK-------GN----EFVRGISGGERKRV-----SIAEALVSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred CCCCc----H-HHHHhhhhhhc-------cc----cchhhCCHHHHHHH-----HHHHHHhhCCCEEEEcCCCccCCHHH
Confidence 11100 1 11111110110 11 11112334444443 344566789999998 7888777
Q ss_pred hHHHHHHHHHHcC--CCcEEEEeccc
Q 014494 369 AEEVYEELERRVQ--GVPIYPVCAVL 392 (423)
Q Consensus 369 ~~~~~~~l~~~~~--~~~ii~vSA~~ 392 (423)
.+.+.+.+.+... +..++.++++.
T Consensus 154 ~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 154 ALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 7777777776542 34556666543
No 421
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.58 E-value=9.3e-08 Score=91.85 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4678899999999999999999999999999997
No 422
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.57 E-value=1.1e-07 Score=88.88 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999999999999997
No 423
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=2.3e-07 Score=89.93 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999999999999999997
No 424
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.57 E-value=6.6e-07 Score=87.22 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCC--cc------cceecceE--EEEEeCC--eeEEEEcCCCCcCCcccccc---
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGH--YS------FTTLRPNL--GNMNFDD--IQITVADIPGLIKGAHENRG--- 301 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~--~~------ftTl~~~~--g~v~~~~--~~i~l~DtpG~i~~a~~~~~--- 301 (423)
+|.++|.+|+|||||+|.|.+....... ++ ..|+.... ..+.-++ ..+.++||||+.........
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 6899999999999999999987433221 11 11222222 2232233 57899999999764322110
Q ss_pred ----chHHHHHHH-------------hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 014494 302 ----LGHAFLRHI-------------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 302 ----l~~~fl~~i-------------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
+..+|-.++ .+.|++||+++.+.. .....-...+++|.. ..+.|-|+.|.
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-------~L~~~Di~~mk~Ls~------~vNvIPvIaKa 152 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-------GLKPLDIEFMKRLSK------RVNVIPVIAKA 152 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-------SS-HHHHHHHHHHTT------TSEEEEEESTG
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-------cchHHHHHHHHHhcc------cccEEeEEecc
Confidence 111222222 245799999998651 111112234444432 46788899999
Q ss_pred CcCChHHH
Q 014494 365 DEDGAEEV 372 (423)
Q Consensus 365 Dl~~~~~~ 372 (423)
|....++.
T Consensus 153 D~lt~~el 160 (281)
T PF00735_consen 153 DTLTPEEL 160 (281)
T ss_dssp GGS-HHHH
T ss_pred cccCHHHH
Confidence 99987653
No 425
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=1.1e-07 Score=93.18 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=31.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-+.++|++..+..++|+|++|||||||+++|+|.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4678999999999999999999999999999997
No 426
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.57 E-value=1e-07 Score=89.63 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|+|||||++.|+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 427
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.57 E-value=1e-07 Score=99.47 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=83.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc--ccccch
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGLG 303 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~--~~~~l~ 303 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++....+...+++..... ++..+.
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~ 109 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELK 109 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhh
Confidence 568899999999999999999999999999997 3455566666653322222223322111 000000
Q ss_pred HHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHH
Q 014494 304 HAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 374 (423)
Q Consensus 304 ~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~ 374 (423)
..+ ....+.++.++-.+++....+......+..+.+++ .++.++...|.++++ +-+|......+++
T Consensus 110 ~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRV-----aLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle 184 (549)
T PRK13545 110 GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRL-----GFAISVHINPDILVIDEALSVGDQTFTKKCLD 184 (549)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHH-----HHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 000 00001111112222222211212223444554444 234566788999998 8899887777777
Q ss_pred HHHHHc-CCCcEEEEecc
Q 014494 375 ELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 375 ~l~~~~-~~~~ii~vSA~ 391 (423)
.|.+.. .+..++.+|+.
T Consensus 185 lL~el~~~G~TIIIVSHd 202 (549)
T PRK13545 185 KMNEFKEQGKTIFFISHS 202 (549)
T ss_pred HHHHHHhCCCEEEEEECC
Confidence 776653 34567777753
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.57 E-value=5.8e-07 Score=81.54 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=77.6
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG 303 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~ 303 (423)
--..++|++..+..++|+|++|||||||+++|+|. ..|..|.+.+++..+. + +
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~--~-------------~- 69 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVS--D-------------L- 69 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHH--H-------------H-
Confidence 34678999999999999999999999999999997 2344566665543210 0 0
Q ss_pred HHHHHHHhccceeEEEEecCCCCC-----CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHH
Q 014494 304 HAFLRHIERTKVLAYVVDLASGLD-----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 374 (423)
Q Consensus 304 ~~fl~~i~~ad~ll~VvD~s~~~~-----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~ 374 (423)
...+. ..+-++.+-..... ......+..+.+++ .++.++...|.++++ +-+|....+.+.+
T Consensus 70 ---~~~~~--~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv-----~laral~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 70 ---EKALS--SLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL-----ALARILLQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred ---HHHHH--hhEEEEccCCeeecccHHHhhcccCCHHHHHHH-----HHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 00000 00111111000000 00001233443333 344567789999998 8888877777777
Q ss_pred HHHHHcCCCcEEEEecc
Q 014494 375 ELERRVQGVPIYPVCAV 391 (423)
Q Consensus 375 ~l~~~~~~~~ii~vSA~ 391 (423)
.+.+...+..++.+|+.
T Consensus 140 ~l~~~~~~~tii~~sh~ 156 (178)
T cd03247 140 LIFEVLKDKTLIWITHH 156 (178)
T ss_pred HHHHHcCCCEEEEEecC
Confidence 77776555567777754
No 429
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.57 E-value=2.4e-07 Score=85.38 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=76.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEE----------EEcCCCCcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT----------VADIPGLIK 294 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~----------l~DtpG~i~ 294 (423)
-..++|++..+..++|+|++|+|||||++.|+|..+ ..|..|.+.+++..+. +.+.+.+..
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~ 95 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT---------GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEeCchHhhhheEEEccCcccCCC
Confidence 356788999999999999999999999999999731 0345566666553221 112222211
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChH
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAE 370 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~ 370 (423)
.. .+...+ ....... . .+..+.+++ .++.++...|.++++ +-+|.....
T Consensus 96 ~~----t~~~~i-~~~~~~~------~-----------LS~G~~qrv-----~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 96 TL----TVRETL-MFAAKLR------G-----------LSGGERKRV-----SIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred CC----cHHHHH-HHHHHhc------c-----------CCHHHHHHH-----HHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 00 011110 0000000 1 223444433 234566788999998 888877777
Q ss_pred HHHHHHHHHc-CCCcEEEEecc
Q 014494 371 EVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 371 ~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
.+.+.|.+.. .+..++.+|+.
T Consensus 149 ~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 149 QVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred HHHHHHHHHHhCCCEEEEEecC
Confidence 7777776654 34566666654
No 430
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.57 E-value=1.3e-07 Score=91.31 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3568899999999999999999999999999997
No 431
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.57 E-value=1.1e-07 Score=89.82 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=31.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 432
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.56 E-value=2.1e-07 Score=88.35 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 433
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=1.4e-07 Score=91.91 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999999999999997
No 434
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.56 E-value=3e-07 Score=93.32 Aligned_cols=151 Identities=18% Similarity=0.137 Sum_probs=84.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe---------------------e
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI---------------------Q 283 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~---------------------~ 283 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .|+.|.+.+++. -
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-----------~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-----------PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----------CCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 46789999999999999999999999999999973 233344433321 0
Q ss_pred EEEEcCCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC
Q 014494 284 ITVADIPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 356 (423)
Q Consensus 284 i~l~DtpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 356 (423)
..+..-+++..... ++..++..+ .....++.-++-.+.+....+......+..+.+++ .++.+|...|
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV-----~LARALa~~P 183 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV-----GLARAFAMDA 183 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHhcCC
Confidence 12223344433111 111111100 00011222223333333322222222334444333 4556778999
Q ss_pred eEEEE----eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 357 SLVVA----NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 357 ~IiVl----NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
.|+++ +-+|.....++.+.|.+... +.+++++|+.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 99998 77887777777776666542 5678888864
No 435
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.5e-07 Score=85.47 Aligned_cols=99 Identities=22% Similarity=0.227 Sum_probs=59.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCC-----------CCcccceecceEEEEEeCC---eeEEEEcCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAV-----------GHYSFTTLRPNLGNMNFDD---IQITVADIPG 291 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i-----------~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG 291 (423)
..+++++..+...++|||+||||||||+.+++.-+.- ..++...+......+...+ .++++-|..+
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~ 97 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVG 97 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhh
Confidence 3467888889899999999999999999998862221 1111111111111111111 4788889999
Q ss_pred CcCCccccccchHHHHHHHhccceeEEEEecCC
Q 014494 292 LIKGAHENRGLGHAFLRHIERTKVLAYVVDLAS 324 (423)
Q Consensus 292 ~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~ 324 (423)
|.+.....-.+...-..++..|--.+.+-|+++
T Consensus 98 FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d 130 (252)
T COG4604 98 FGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD 130 (252)
T ss_pred cCCCcccCCCCchHHHHHHHHHHHHhcccchHH
Confidence 988665433355444556655544444444443
No 436
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1e-07 Score=90.61 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 19 l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 437
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.56 E-value=7.5e-08 Score=88.20 Aligned_cols=54 Identities=30% Similarity=0.314 Sum_probs=43.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC---------CCCCCcccceecceEEEEEeCCeeEEEEcCCCC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK---------PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~---------~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~ 292 (423)
..++++|.+|+|||||+|+|.+.. +.++..|+||.++....+. ..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 379999999999999999998742 3567888999887655542 26899999996
No 438
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.56 E-value=2.2e-07 Score=85.92 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=32.2
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
--..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34678899999999999999999999999999997
No 439
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.56 E-value=2.2e-07 Score=91.10 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3678999999999999999999999999999997
No 440
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.55 E-value=2e-07 Score=92.32 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=83.6
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGL 292 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~ 292 (423)
--+.++|+++.+..++|+|++||||||||++|+|. ..|+.|.+.+++..+ .++-..-+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yAL 86 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYAL 86 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCccc
Confidence 44668999999999999999999999999999998 445556555554211 11111112
Q ss_pred cCCcc--ccccchHHHH----HH-HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 293 IKGAH--ENRGLGHAFL----RH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 293 i~~a~--~~~~l~~~fl----~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
+...+ +|..++.... .. -++..-+.-++.+.+.++..+...+..+.+++ ++.+++...|.++++
T Consensus 87 yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRV-----AlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 87 YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRV-----ALARALVRKPKVFLLDEPL 161 (338)
T ss_pred cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHH-----HHHHHHhcCCCEEEecCch
Confidence 11111 1111111110 00 11122223334444444444444566665554 456788899999986
Q ss_pred eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
..+|..-..+...+|++.. -+.+++.|++-
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD 193 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 4445433334444444433 24677888763
No 441
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2e-07 Score=91.00 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=31.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-+.++|++..+..++|+|++|||||||+++|+|.
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999999999999999997
No 442
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.55 E-value=3e-07 Score=87.00 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=79.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-----------EEEEcCCCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------ITVADIPGLI 293 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-----------i~l~DtpG~i 293 (423)
-..++|.+..+..++|+|++|+|||||+++|+|..+ |..|.+.+++.. ..+.+-+.+.
T Consensus 16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----------PTSGEILLDGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----------CCceEEEECCEEcCcCChhhcceEEEecccccC
Confidence 356788899999999999999999999999999732 333444333311 1112223332
Q ss_pred CCccccccchHHHH------H-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAHENRGLGHAFL------R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~~~~~l~~~fl------~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
........+...+. . ....++.++..+++....+......+..+.+++ .+..++...|.++++ +
T Consensus 85 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl-----~laral~~~p~llllDEP~~ 159 (232)
T cd03300 85 PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRV-----AIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCcc
Confidence 21111000100000 0 001111222222232211111122344444443 234566789999998 7
Q ss_pred CCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 363 KIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
.+|......+.+.|.+... +.+++.+|+.
T Consensus 160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 8887777777777766542 4566766654
No 443
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=2e-07 Score=90.79 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46789999999999999999999999999999973
No 444
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=1.2e-07 Score=91.06 Aligned_cols=34 Identities=35% Similarity=0.420 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 18 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 445
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.54 E-value=5.3e-07 Score=79.79 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHhc-cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHH--HHHHHcCC
Q 014494 306 FLRHIER-TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYE--ELERRVQG 382 (423)
Q Consensus 306 fl~~i~~-ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~--~l~~~~~~ 382 (423)
.++|+.+ +|++++|+|++++... . ...+...+. ..++|.++|+||+|+........ .+.+. .+
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~----~----~~~l~~~~~-----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-~~ 70 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELT----R----SRKLERYVL-----ELGKKLLIVLNKADLVPKEVLEKWKSIKES-EG 70 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCccc----C----CHHHHHHHH-----hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh-CC
Confidence 3555554 9999999999763210 1 111222221 13689999999999975433211 22222 34
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
.+++++||+++.|+++|++.|.+.++.
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 679999999999999999999988764
No 446
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.54 E-value=1.5e-07 Score=90.61 Aligned_cols=34 Identities=38% Similarity=0.457 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 447
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.54 E-value=3.5e-07 Score=86.84 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=89.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc----ccch---
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN----RGLG--- 303 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~----~~l~--- 303 (423)
..+.++++|.+|+|||||||.+...+.. ....+..|...+. + .-+.++.++|.||+.. |.-+ ..+.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~--f-~v~~~~~~vDlPG~~~-a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH--F-HVGKSWYEVDLPGYGR-AGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee--e-eccceEEEEecCCccc-ccCCccCcchHhHhH
Confidence 3468999999999999999999875321 1112322221111 1 1236899999999433 1111 1122
Q ss_pred HHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---------HH--
Q 014494 304 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---------EV-- 372 (423)
Q Consensus 304 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---------~~-- 372 (423)
..++..-+.--.+.+++|++.+.. ..-.....++.+ .+.|+.+|+||||....- .+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~-----~~D~~~i~~~ge--------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQ-----PTDNPEIAWLGE--------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCC-----CCChHHHHHHhh--------cCCCeEEeeehhhhhhhccccccCcccccee
Confidence 222222222234466778876432 111222223222 379999999999975321 01
Q ss_pred -HHH-HHHHc-CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 373 -YEE-LERRV-QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 373 -~~~-l~~~~-~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+.. ++..+ ...|.+.+|+.++.|+++|+-.|.+..
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ehhhccccceeccCCceeeecccccCceeeeeehhhhh
Confidence 111 11111 245678899999999999877776554
No 448
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.54 E-value=4.4e-07 Score=80.57 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCC--C
Q 014494 306 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQG--V 383 (423)
Q Consensus 306 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~--~ 383 (423)
.++.++.+|++++|+|++.+.. .....+...+... -.++|.|+|+||+|+...++....+..+... .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~--------~~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~ 70 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMG--------TRCKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT 70 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcc--------ccCHHHHHHHHhc---cCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE
Confidence 3577899999999999987421 1112233333221 1258999999999998665433323322211 2
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
.++++||+.+.|+++|++.+.+++.
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHHh
Confidence 2588999999999999999988764
No 449
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.54 E-value=4.8e-07 Score=86.51 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=31.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|+++.+..++|+|++|||||||+++|+|..
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5688999999999999999999999999999973
No 450
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=5.2e-07 Score=81.33 Aligned_cols=130 Identities=23% Similarity=0.348 Sum_probs=75.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHH
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHA 305 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~ 305 (423)
..++|++..+..++|+|++|+|||||++.|+|. +.|..|.+.+++..+.-.+.
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~---------------- 71 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGVDLRDLDL---------------- 71 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhhhcCH----------------
Confidence 567889999999999999999999999999997 33445666665532210000
Q ss_pred HHHHHhccceeEEEEecCCCCCCCCC--CCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHH
Q 014494 306 FLRHIERTKVLAYVVDLASGLDGRKG--IKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERR 379 (423)
Q Consensus 306 fl~~i~~ad~ll~VvD~s~~~~~~~~--~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~ 379 (423)
..+ + ..+.++..-......... ..+..+.+++ .++.++...|.++++ +.+|......+.+.+.+.
T Consensus 72 --~~~-~-~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl-----~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 72 --ESL-R-KNIAYVPQDPFLFSGTIRENILSGGQRQRI-----AIARALLRDPPILILDEATSALDPETEALILEALRAL 142 (171)
T ss_pred --HHH-H-hhEEEEcCCchhccchHHHHhhCHHHHHHH-----HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence 000 0 011122111100000000 0111222222 344567789999998 888887777777777776
Q ss_pred cCCCcEEEEecc
Q 014494 380 VQGVPIYPVCAV 391 (423)
Q Consensus 380 ~~~~~ii~vSA~ 391 (423)
..+..++.+|+.
T Consensus 143 ~~~~tii~~sh~ 154 (171)
T cd03228 143 AKGKTVIVIAHR 154 (171)
T ss_pred cCCCEEEEEecC
Confidence 545556666653
No 451
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.53 E-value=2.7e-07 Score=88.71 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999999999999973
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.53 E-value=2.8e-07 Score=84.85 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=85.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEE-cC------CCCcC----
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVA-DI------PGLIK---- 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~-Dt------pG~i~---- 294 (423)
+.++|++..+..|+|||++||||||||++|.+.. .+..|.+.+++..+... |. .|+.-
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-----------~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-----------EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-----------CCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 5688899999999999999999999999999973 34556666655322110 00 11100
Q ss_pred -Cccc----cccchHHH------HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE--
Q 014494 295 -GAHE----NRGLGHAF------LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 361 (423)
Q Consensus 295 -~a~~----~~~l~~~f------l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-- 361 (423)
..|. |.-+.... ....+.|--+|--+.+.+..+..+...+..+.+++ +++++|.-.|.++++
T Consensus 88 LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRV-----AIARALaM~P~vmLFDE 162 (240)
T COG1126 88 LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRV-----AIARALAMDPKVMLFDE 162 (240)
T ss_pred ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHH-----HHHHHHcCCCCEEeecC
Confidence 0010 00000000 01122333344445555544433444555665554 456788899999997
Q ss_pred --eCCCcCChHHHHHHHHHHc-CCCcEEEEeccc
Q 014494 362 --NKIDEDGAEEVYEELERRV-QGVPIYPVCAVL 392 (423)
Q Consensus 362 --NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~~ 392 (423)
.-+|..-..++++.+++.. .+.+.+.|++-.
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 5555444445565555554 466777777644
No 453
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.53 E-value=1.4e-07 Score=99.32 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=31.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999999999997
No 454
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.53 E-value=3.1e-07 Score=86.03 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=87.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceE---EEEEeCCeeEEEEcCCCCcCCcccccc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNL---GNMNFDDIQITVADIPGLIKGAHENRG 301 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~---g~v~~~~~~i~l~DtpG~i~~a~~~~~ 301 (423)
.+++|++..+..+||||.+|||||||.++|.|.. +..+.+.+....... ....+...++++-|-.+-..... .
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~---t 100 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR---T 100 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch---h
Confidence 5688999999999999999999999999999973 222222221100000 00112234566666554332111 0
Q ss_pred chHHHHHHH---------hccceeEEEEecCC-CCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcC
Q 014494 302 LGHAFLRHI---------ERTKVLAYVVDLAS-GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDED 367 (423)
Q Consensus 302 l~~~fl~~i---------~~ad~ll~VvD~s~-~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~ 367 (423)
........+ +++.-++--|.+.. ..+..+-..+..+.+++ +++++|.-.|.++++ .-+|..
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRi-----aIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRI-----AIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHH-----HHHHHhccCCCEEEecCchhhhcHH
Confidence 111000000 00111111111111 00111112334444444 356788899999998 666765
Q ss_pred ChHHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHHHH
Q 014494 368 GAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLR 404 (423)
Q Consensus 368 ~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~ 404 (423)
-..++++.|.+.. .+..+++||+-..- ++.+++++.
T Consensus 176 iQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~ 213 (252)
T COG1124 176 VQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIA 213 (252)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhhee
Confidence 5556665554433 25689999974322 455555543
No 455
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.52 E-value=4.7e-07 Score=84.41 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=40.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~ 281 (423)
-..++|+++.+..|+|||++||||||||++|.+. .+++.|.+.+++
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g 65 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNG 65 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecc
Confidence 3678999999999999999999999999999996 667777777665
No 456
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=2.3e-07 Score=88.41 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||++.|+|.
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 457
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=1.2e-07 Score=91.95 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=30.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 567889999999999999999999999999997
No 458
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=4.5e-07 Score=86.04 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=31.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678899999999999999999999999999997
No 459
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.52 E-value=3.3e-07 Score=83.46 Aligned_cols=134 Identities=17% Similarity=0.253 Sum_probs=75.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|+++.+..++|+|++|||||||++.|+|. +.|..|.+.+++..+.-++. .
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~--------------~ 70 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGKPVTRRSP--------------R 70 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccCH--------------H
Confidence 3567889999999999999999999999999997 34556766666532211100 0
Q ss_pred HHHHHHhccceeEEEEecCC--CCCCCCCCCcHHHHH------HHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHH
Q 014494 305 AFLRHIERTKVLAYVVDLAS--GLDGRKGIKPWKQLR------DLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEV 372 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~--~~~~~~~~~~~~~~~------~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~ 372 (423)
. .. ...+.++..-.. ... ......+.+. .-......++.++...|.++++ +-+|....+.+
T Consensus 71 ~---~~--~~~i~~~~q~~~~~~~~--~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l 143 (182)
T cd03215 71 D---AI--RAGIAYVPEDRKREGLV--LDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEI 143 (182)
T ss_pred H---HH--hCCeEEecCCcccCccc--CCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHH
Confidence 0 00 001122221100 000 0001111110 0111222345677889999998 88888777777
Q ss_pred HHHHHHHc-CCCcEEEEec
Q 014494 373 YEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 373 ~~~l~~~~-~~~~ii~vSA 390 (423)
.+.+.+.. .+..++.+|+
T Consensus 144 ~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 144 YRLIRELADAGKAVLLISS 162 (182)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 77777654 3455666665
No 460
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=2e-07 Score=82.65 Aligned_cols=56 Identities=30% Similarity=0.478 Sum_probs=46.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGL 292 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~ 292 (423)
....++++|.||+|||||+|+|++.. ..+++.+++|..+....+ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 34589999999999999999999875 457888999988765433 257999999996
No 461
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=1.5e-07 Score=89.18 Aligned_cols=158 Identities=23% Similarity=0.191 Sum_probs=90.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCC-CCcc-----------cceecceEEEEEeCCeeEEEEcCCCC-
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAV-GHYS-----------FTTLRPNLGNMNFDDIQITVADIPGL- 292 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i-~~~~-----------ftTl~~~~g~v~~~~~~i~l~DtpG~- 292 (423)
..+++++..+..++|+|+||||||||++.|.|.-... +... ...+...+|.+..+.....+.+|+-.
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~e 100 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDE 100 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHH
Confidence 5688999999999999999999999999999973322 1111 11233445655555444444444321
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCC
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDG 368 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~ 368 (423)
+.....+.++... ...++++-++..+.+.+..+..+...+..+.+++ +++..|+..|.++++ +-+|...
T Consensus 101 vafg~~n~g~~~~--e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRv-----aIA~vLa~~P~iliLDEPta~LD~~~ 173 (235)
T COG1122 101 VAFGLENLGLPRE--EIEERVAEALELVGLEELLDRPPFNLSGGQKQRV-----AIAGVLAMGPEILLLDEPTAGLDPKG 173 (235)
T ss_pred HhhchhhcCCCHH--HHHHHHHHHHHHcCchhhccCCccccCCcceeeH-----HhhHHHHcCCCEEEEcCCCCCCCHHH
Confidence 1111222333322 1122233233333333322322333444554444 334456688999999 8888887
Q ss_pred hHHHHHHHHHHcC--CCcEEEEec
Q 014494 369 AEEVYEELERRVQ--GVPIYPVCA 390 (423)
Q Consensus 369 ~~~~~~~l~~~~~--~~~ii~vSA 390 (423)
..++++.++++.. +.++|.+|+
T Consensus 174 ~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 174 RRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeC
Confidence 7888888877653 346777775
No 462
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.51 E-value=2.7e-07 Score=86.97 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=31.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||++.|+|..
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4578889999999999999999999999999973
No 463
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=2.1e-07 Score=90.42 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.7
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
--..++|++..+..++|+|++|||||||+++|+|..
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999999999999999973
No 464
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.51 E-value=1.7e-07 Score=98.99 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=79.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-------------E-EEEcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------I-TVADIP 290 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-------------i-~l~Dtp 290 (423)
-..++|++..+..++|+|++|||||||+++|+|.- .|..|.+.+++.. + .+...+
T Consensus 27 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-----------PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 35789999999999999999999999999999972 2334444443311 1 112222
Q ss_pred CCcCCcc--ccccchHH-HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 291 GLIKGAH--ENRGLGHA-FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 291 G~i~~a~--~~~~l~~~-fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
.+..... ++..+... ....-+++.-++-.+.+....+......+..+.+++ .++.++...|.++++ +.
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv-----~la~aL~~~p~lllLDEPt~~ 170 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIV-----EILRGLMRDSRILILDEPTAS 170 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECCCCC
Confidence 2221111 00000000 000001111111112222211111122344444443 345567789999999 89
Q ss_pred CCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 364 IDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+|......+.+.|++.. .+..++.+|+
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiivtH 198 (510)
T PRK15439 171 LTPAETERLFSRIRELLAQGVGIVFISH 198 (510)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99888777777776653 3456666665
No 465
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.51 E-value=3.8e-07 Score=87.90 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999999999999999997
No 466
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.51 E-value=4.2e-07 Score=87.44 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=32.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|+++.+..++|+|++|||||||++.|+|..
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999999999999973
No 467
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.50 E-value=8.3e-07 Score=80.17 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=77.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..++|++..+..++|+|++|+|||||++.|+|. +.|..|.+.+++..+. +.+ . .
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~--~~~---~---------~ 72 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADIS--QWD---P---------N 72 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcc--cCC---H---------H
Confidence 3568899999999999999999999999999997 3455677766654321 100 0 0
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCC--CCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHH
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKG--IKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELER 378 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~--~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~ 378 (423)
.+ . ..+.++..-......... ..+..+.+++ .++.++...|.++++ +.+|......+.+.+.+
T Consensus 73 ~~----~--~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv-----~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 73 EL----G--DHVGYLPQDDELFSGSIAENILSGGQRQRL-----GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HH----H--hheEEECCCCccccCcHHHHCcCHHHHHHH-----HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 00 0 011222211110000000 0122333332 344567789999998 88888877777777766
Q ss_pred Hc-CCCcEEEEecc
Q 014494 379 RV-QGVPIYPVCAV 391 (423)
Q Consensus 379 ~~-~~~~ii~vSA~ 391 (423)
.. .+..++.+|+.
T Consensus 142 ~~~~~~tii~~sh~ 155 (173)
T cd03246 142 LKAAGATRIVIAHR 155 (173)
T ss_pred HHhCCCEEEEEeCC
Confidence 54 34567777753
No 468
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6e-07 Score=86.98 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||++.|+|.
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999999999999999997
No 469
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.2e-07 Score=88.98 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
+.+.++|.||+.- |...++.-..--|..++++........++ ..+.+..+ ++. .-+..|++-
T Consensus 125 RHVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQ---TsEHLaav--eiM------~LkhiiilQ 186 (466)
T KOG0466|consen 125 RHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQ---TSEHLAAV--EIM------KLKHIIILQ 186 (466)
T ss_pred EEEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCc---hhhHHHHH--HHh------hhceEEEEe
Confidence 3678999999753 33444444444466666776655433222 22222221 221 125566667
Q ss_pred eCCCcCChHH---HHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccccCCcCCcccccc
Q 014494 362 NKIDEDGAEE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGEKSERLSLDKIQV 422 (423)
Q Consensus 362 NKiDl~~~~~---~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~i~~ 422 (423)
||+|+....+ ..+.+.++. .+.|++++||..+.||+-+++.|.+.++.........++++|
T Consensus 187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIV 255 (466)
T KOG0466|consen 187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIV 255 (466)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEE
Confidence 9999987643 344455544 467999999999999999999999999877776666666653
No 470
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.50 E-value=2.8e-07 Score=86.63 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999999999999973
No 471
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=1.8e-07 Score=92.44 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=32.3
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-+.++|++..+..++|+|++|||||||++.|+|..
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45789999999999999999999999999999973
No 472
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.50 E-value=1.2e-07 Score=88.85 Aligned_cols=156 Identities=27% Similarity=0.334 Sum_probs=86.0
Q ss_pred CCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEE-------------
Q 014494 220 GEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITV------------- 286 (423)
Q Consensus 220 g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l------------- 286 (423)
|-----..++|+++.+..++||||||||||||+|.|+|. +.|+.|.+.+.+..+.=
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 333334678999999999999999999999999999997 45555666655421100
Q ss_pred -EcCCCCcCCcc--ccccc-----------------hHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHH
Q 014494 287 -ADIPGLIKGAH--ENRGL-----------------GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE 346 (423)
Q Consensus 287 -~DtpG~i~~a~--~~~~l-----------------~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~ 346 (423)
+-++-+....+ ++.-+ .+.-....++|..++-.+++.+..+...+..+..+.+.+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L----- 158 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL----- 158 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH-----
Confidence 00011111100 00000 001122344555566666666644444444455554443
Q ss_pred hhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 347 HHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 347 ~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
.++.+|...|.++++ -.+...+..++.+.|++.. .+.+++.|-+.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 345678899999996 1222222234455555544 23677777653
No 473
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.50 E-value=3.1e-07 Score=87.88 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=73.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEE-EcCCCCcCCccccccchHHHHHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITV-ADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l-~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
+..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+.+ .+.+.+.........+ ..+....
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l-~~~~~~~ 89 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLL-SSITKDF 89 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCceEEEecccccCCCCCCHHHHH-HHHhhhc
Confidence 346789999999999999999999997 33444555555432221 1222111100000000 0000000
Q ss_pred ----hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc--
Q 014494 311 ----ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV-- 380 (423)
Q Consensus 311 ----~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~-- 380 (423)
..+.-++..+.+....+......+..+.+++ .++.+|...|.++++ +.+|......+.+.|++..
T Consensus 90 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv-----~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 90 YTHPYFKTEIAKPLQIEQILDREVPELSGGELQRV-----AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164 (246)
T ss_pred cccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0011111112222111111122344444443 344567789999998 8888877777777776654
Q ss_pred CCCcEEEEecc
Q 014494 381 QGVPIYPVCAV 391 (423)
Q Consensus 381 ~~~~ii~vSA~ 391 (423)
.+..++.+|+.
T Consensus 165 ~~~tiiivsHd 175 (246)
T cd03237 165 NEKTAFVVEHD 175 (246)
T ss_pred cCCEEEEEeCC
Confidence 24566766653
No 474
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=4.9e-07 Score=80.18 Aligned_cols=120 Identities=28% Similarity=0.340 Sum_probs=76.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
-..+++++..+..++|+|++|+|||||+++|++. +.+..|.+.+++..+.-. . ..
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~------~--------~~ 69 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKL------P--------LE 69 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccC------C--------HH
Confidence 4567889999999999999999999999999997 345667777766432111 0 00
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~ 380 (423)
.....+.++..+|. .+.+++. +..++...|.++++ +.+|......+.+.+.+..
T Consensus 70 ------~~~~~i~~~~qlS~-----------G~~~r~~-----l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~ 127 (157)
T cd00267 70 ------ELRRRIGYVPQLSG-----------GQRQRVA-----LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA 127 (157)
T ss_pred ------HHHhceEEEeeCCH-----------HHHHHHH-----HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 11122445554443 3333332 23345567888888 7888777666666666654
Q ss_pred C-CCcEEEEecc
Q 014494 381 Q-GVPIYPVCAV 391 (423)
Q Consensus 381 ~-~~~ii~vSA~ 391 (423)
. +..++.+|+.
T Consensus 128 ~~~~tii~~sh~ 139 (157)
T cd00267 128 EEGRTVIIVTHD 139 (157)
T ss_pred HCCCEEEEEeCC
Confidence 3 3456666653
No 475
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.50 E-value=6.5e-07 Score=86.64 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=31.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|+++.+..++|+|++|||||||+++|+|..
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5688999999999999999999999999999963
No 476
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.49 E-value=5.8e-07 Score=86.46 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=31.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||++.|+|.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999999999999999999997
No 477
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.49 E-value=4.9e-07 Score=83.75 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=78.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc-cccc--
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH-ENRG-- 301 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~-~~~~-- 301 (423)
-..++|+++.+..++|+|++|||||||++.|+|.. .|..|.+.+++.-..+.+.|.+....- ++..
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-----------~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~ 89 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-----------EKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFG 89 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-----------CCCCCeEEEcCEEEEEecCchhccCcHHHHhccC
Confidence 35788999999999999999999999999999972 344455555442222333333321100 0000
Q ss_pred --chH-HHHHHHhccceeEEEEecC-----CCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCCh
Q 014494 302 --LGH-AFLRHIERTKVLAYVVDLA-----SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGA 369 (423)
Q Consensus 302 --l~~-~fl~~i~~ad~ll~VvD~s-----~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~ 369 (423)
... ......+.+.+. ..++.. ...+......+..+.+++ .++.++...|.++++ +-+|....
T Consensus 90 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~lS~G~~qrv-----~laral~~~p~llllDEP~~~LD~~~~ 163 (204)
T cd03250 90 KPFDEERYEKVIKACALE-PDLEILPDGDLTEIGEKGINLSGGQKQRI-----SLARAVYSDADIYLLDDPLSAVDAHVG 163 (204)
T ss_pred CCcCHHHHHHHHHHcCcH-HHHHhccCcccceecCCCCcCCHHHHHHH-----HHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 000 111111111110 001100 000001112344444443 244567789999998 77887666
Q ss_pred HHHHHH-HHHHc-CCCcEEEEecc
Q 014494 370 EEVYEE-LERRV-QGVPIYPVCAV 391 (423)
Q Consensus 370 ~~~~~~-l~~~~-~~~~ii~vSA~ 391 (423)
+.+.+. +.... .+..++.+|+.
T Consensus 164 ~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 164 RHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred HHHHHHHHHHhccCCCEEEEEeCC
Confidence 666664 34443 34567777754
No 478
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.48 E-value=5.4e-07 Score=87.44 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=31.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3678899999999999999999999999999997
No 479
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=1.1e-06 Score=83.21 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45788999999999999999999999999999973
No 480
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=7.9e-07 Score=85.54 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46788999999999999999999999999999973
No 481
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.1e-06 Score=91.46 Aligned_cols=150 Identities=23% Similarity=0.271 Sum_probs=91.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe------------eEEEEcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI------------QITVADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~------------~i~l~DtpG~ 292 (423)
-..+++.++.+..++|||.+|||||||++.|.|. +.|+.|.+.+++. ++..+.--.+
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-----------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~ 405 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-----------LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCccccccCHHHHHhHeeeeCCCCc
Confidence 3678999999999999999999999999999997 4445566666542 1222211111
Q ss_pred cCCcc--ccccc------hHHHHHHHhccceeEEEEecCCCCCCCCC----CCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 293 IKGAH--ENRGL------GHAFLRHIERTKVLAYVVDLASGLDGRKG----IKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 293 i~~a~--~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~~~~~~----~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+-..+ +|..+ ..+....++++-+ ...++.....+...+ .-+..+.+++ .+++++..++.+++
T Consensus 406 lf~gTireNi~l~~~~~s~e~i~~al~~a~l-~~~v~~p~GLdt~ige~G~~LSgGQ~QRl-----aLARAll~~~~l~l 479 (559)
T COG4988 406 LFAGTIRENILLARPDASDEEIIAALDQAGL-LEFVPKPDGLDTVIGEGGAGLSGGQAQRL-----ALARALLSPASLLL 479 (559)
T ss_pred cccccHHHHhhccCCcCCHHHHHHHHHHhcH-HHhhcCCCcccchhccCCCCCCHHHHHHH-----HHHHHhcCCCCEEE
Confidence 11110 11111 1222333333322 222222222221111 2456666665 34567778888888
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ ..+|..++..+.+.|.+...+..++.+|+.
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr 514 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC
Confidence 8 788988888888888888878888889875
No 482
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.48 E-value=4.9e-07 Score=86.60 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35688999999999999999999999999999974
No 483
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.47 E-value=2.8e-07 Score=86.51 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=31.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|.+..+..++|+|++|||||||+++|+|.
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568889999999999999999999999999997
No 484
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=84.04 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=31.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999999999999997
No 485
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=6.8e-07 Score=87.41 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 55 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35688999999999999999999999999999973
No 486
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.2e-07 Score=97.99 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=38.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~ 281 (423)
+.++|++..+...+|+|.||||||||++.|+|. ..|+.|.+.+++
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G 69 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDG 69 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECC
Confidence 568899999999999999999999999999997 345556666665
No 487
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.47 E-value=4.8e-07 Score=85.09 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=31.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|+++.+..++|+|++|||||||++.|+|..
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999999973
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.47 E-value=3.2e-07 Score=97.31 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=86.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EE-EcCCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TV-ADIPGL 292 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l-~DtpG~ 292 (423)
=.+++|+++.+..|+|||++|||||||++.|++. .+|+.|.+.+++..+ .+ .-.|-+
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l 419 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL 419 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc
Confidence 4678999999999999999999999999999997 344555555554211 11 111111
Q ss_pred cCC-ccccccc------hHHHHHHHhccceeEEEEecCCCCCCC----CCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 293 IKG-AHENRGL------GHAFLRHIERTKVLAYVVDLASGLDGR----KGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 293 i~~-a~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~~~~----~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+ -.+|..+ .....+.++.|.+-=++-...+..+.. ...-+.++.+++ .+++++..+|.|+++
T Consensus 420 F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRi-----aiARall~~~~iliL 494 (529)
T TIGR02868 420 FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRL-----ALARALLADAPILLL 494 (529)
T ss_pred ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHH-----HHHHHHhcCCCEEEE
Confidence 110 0011111 112233333332111111111111100 012345555554 456778889999998
Q ss_pred ----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
.-+|...+..+.+.+.+..++.+++.||+.
T Consensus 495 DE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 495 DEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 777777777778888877677888888874
No 489
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.47 E-value=4.9e-07 Score=90.27 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=31.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|+++.+..++|+|.+|||||||+++|+|..
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 5789999999999999999999999999999973
No 490
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.47 E-value=4.3e-07 Score=87.55 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|.+..+..++|+|++|||||||++.|+|..
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35688899999999999999999999999999973
No 491
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.47 E-value=8.1e-07 Score=84.44 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=30.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|+|.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999999999996
No 492
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.1e-07 Score=89.90 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=32.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-+.++|++..+..|+|+|++|||||||++.|+|.
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4678999999999999999999999999999997
No 493
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.46 E-value=2.3e-06 Score=76.89 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=76.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEE-EEcCCCCcCCccccccc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQIT-VADIPGLIKGAHENRGL 302 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~-l~DtpG~i~~a~~~~~l 302 (423)
-..++|++..+..++|+|++|||||||++.|+|. +.|..|.+.+++ ..+. +...+.+.. .
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~~i~~~~q~~~~~~-----~-- 78 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-----------WPWGSGRIGMPEGEDLLFLPQRPYLPL-----G-- 78 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCCceEEEECCCCcccc-----c--
Confidence 3567889999999999999999999999999997 334455555544 1121 112221110 0
Q ss_pred hHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHH
Q 014494 303 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELER 378 (423)
Q Consensus 303 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~ 378 (423)
.....+... ... ..+..+.+++. ++.++...|.++++ +.+|......+.+.+.+
T Consensus 79 --tv~~nl~~~-------~~~--------~LS~G~~~rv~-----laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 79 --TLREQLIYP-------WDD--------VLSGGEQQRLA-----FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred --cHHHHhhcc-------CCC--------CCCHHHHHHHH-----HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 111111100 011 23445544442 34456688999998 88888777777777776
Q ss_pred HcCCCcEEEEecc
Q 014494 379 RVQGVPIYPVCAV 391 (423)
Q Consensus 379 ~~~~~~ii~vSA~ 391 (423)
. +..++.+|+.
T Consensus 137 ~--~~tiiivsh~ 147 (166)
T cd03223 137 L--GITVISVGHR 147 (166)
T ss_pred h--CCEEEEEeCC
Confidence 5 4567777764
No 494
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.1e-07 Score=89.68 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=32.5
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
--..++|++..+..++|+|++|||||||+++|+|..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 346788999999999999999999999999999973
No 495
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=3.5e-07 Score=89.08 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 23 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568899999999999999999999999999997
No 496
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.46 E-value=2.5e-07 Score=97.74 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=32.1
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||+++|+|..
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 35789999999999999999999999999999973
No 497
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=3.6e-07 Score=81.97 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=96.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe----CCeeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF----DDIQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~----~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
..++.|+|..|.||||+.++..-.... ..|+.| +......+.+ +..++..|||.|......... .++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe-~~y~at-~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd-------gyy 80 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFE-KTYPAT-LGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD-------GYY 80 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccce-ecccCc-ceeEEeeeeeecccCcEEEEeeecccceeeccccc-------ccE
Confidence 347899999999999999986543222 112211 1111111111 126889999999876322111 122
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHH-HcCCCcEEEEe
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELER-RVQGVPIYPVC 389 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~-~~~~~~ii~vS 389 (423)
-...+.++++|+... ........|..++... -.+.|++++.||.|..+.....+.+.- ...+..++.+|
T Consensus 81 I~~qcAiimFdVtsr-------~t~~n~~rwhrd~~rv---~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iS 150 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSR-------FTYKNVPRWHRDLVRV---RENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEIS 150 (216)
T ss_pred EecceeEEEeeeeeh-------hhhhcchHHHHHHHHH---hcCCCeeeeccceeccccccccccceeeecccceeEEee
Confidence 344577889999873 3344445555555432 236899999999998876511111110 01367899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|++..|.+.-+-++.+.+...
T Consensus 151 aksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cccccccccchHHHhhhhcCC
Confidence 999999999888888776543
No 498
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=7.6e-07 Score=85.21 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=31.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||++.|+|..
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 5688999999999999999999999999999973
No 499
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.46 E-value=3.5e-07 Score=88.38 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=31.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|+++.+..++|+|++|||||||+++|+|.
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999999999997
No 500
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.1e-06 Score=84.30 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=31.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
-..++|++..+..++|+|++|||||||++.|+|..
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45688999999999999999999999999999973
Done!