Query 014494
Match_columns 423
No_of_seqs 526 out of 3190
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 4.3E-64 1.5E-68 499.9 28.8 303 3-412 27-333 (342)
2 1udx_A The GTP-binding protein 100.0 2.2E-60 7.4E-65 483.9 31.9 298 3-412 27-328 (416)
3 2qtf_A Protein HFLX, GTP-bindi 100.0 3.3E-30 1.1E-34 258.3 12.4 252 138-412 91-357 (364)
4 4a9a_A Ribosome-interacting GT 99.9 6.6E-26 2.2E-30 227.1 11.5 155 201-366 39-194 (376)
5 3iev_A GTP-binding protein ERA 99.9 9.6E-21 3.3E-25 185.5 19.4 163 237-411 12-184 (308)
6 2wji_A Ferrous iron transport 99.8 1.5E-20 5.2E-25 166.2 15.9 155 237-408 5-164 (165)
7 2dyk_A GTP-binding protein; GT 99.8 7.8E-21 2.7E-25 165.7 13.5 158 236-407 2-160 (161)
8 1wf3_A GTP-binding protein; GT 99.8 1.2E-20 4.1E-25 184.3 16.2 163 237-410 9-174 (301)
9 3iby_A Ferrous iron transport 99.8 2.7E-21 9.1E-26 184.6 10.9 155 236-406 2-164 (256)
10 3tkl_A RAS-related protein RAB 99.8 2.4E-20 8.3E-25 168.3 16.1 159 236-411 17-181 (196)
11 2hxs_A RAB-26, RAS-related pro 99.8 2.5E-20 8.5E-25 165.4 15.1 160 237-411 8-175 (178)
12 1c1y_A RAS-related protein RAP 99.8 1.1E-19 3.8E-24 159.1 18.2 156 237-408 5-166 (167)
13 3tw8_B RAS-related protein RAB 99.8 1.4E-20 4.8E-25 167.1 12.5 159 236-412 10-174 (181)
14 4dhe_A Probable GTP-binding pr 99.8 2.9E-20 1E-24 171.8 14.5 165 235-412 29-214 (223)
15 1xzp_A Probable tRNA modificat 99.8 1.4E-20 4.7E-25 194.8 13.4 160 233-408 241-404 (482)
16 3i8s_A Ferrous iron transport 99.8 1.2E-20 4.2E-25 181.7 11.7 158 237-410 5-170 (274)
17 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.2E-19 4.1E-24 160.9 17.3 159 237-409 9-174 (177)
18 2il1_A RAB12; G-protein, GDP, 99.8 7.5E-20 2.6E-24 165.7 16.0 156 237-408 28-189 (192)
19 2efe_B Small GTP-binding prote 99.8 2.2E-19 7.5E-24 159.8 18.0 158 237-411 14-177 (181)
20 1g16_A RAS-related protein SEC 99.8 2.8E-20 9.5E-25 163.5 12.0 157 237-410 5-166 (170)
21 2erx_A GTP-binding protein DI- 99.8 2.2E-19 7.5E-24 157.8 17.7 158 237-410 5-168 (172)
22 2gj8_A MNME, tRNA modification 99.8 8.4E-21 2.9E-25 169.4 8.6 161 236-410 5-167 (172)
23 3clv_A RAB5 protein, putative; 99.8 7.6E-20 2.6E-24 165.0 14.9 155 236-409 8-204 (208)
24 3q85_A GTP-binding protein REM 99.8 1.8E-19 6E-24 158.6 16.7 158 237-409 4-167 (169)
25 4dsu_A GTPase KRAS, isoform 2B 99.8 2.3E-19 8E-24 160.5 17.8 157 237-410 6-167 (189)
26 2y8e_A RAB-protein 6, GH09086P 99.8 1.4E-19 4.7E-24 160.4 16.1 156 237-409 16-177 (179)
27 1u8z_A RAS-related protein RAL 99.8 3.6E-19 1.2E-23 155.6 18.5 155 237-408 6-166 (168)
28 1ek0_A Protein (GTP-binding pr 99.8 1.7E-19 5.8E-24 158.2 16.4 155 237-408 5-168 (170)
29 1kao_A RAP2A; GTP-binding prot 99.8 3.2E-19 1.1E-23 155.8 17.9 156 237-409 5-166 (167)
30 1z08_A RAS-related protein RAB 99.8 1E-19 3.4E-24 160.1 14.8 156 237-409 8-169 (170)
31 2g6b_A RAS-related protein RAB 99.8 1.6E-19 5.5E-24 160.5 16.2 157 237-410 12-175 (180)
32 1z2a_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 159.0 15.2 154 237-408 7-166 (168)
33 1r8s_A ADP-ribosylation factor 99.8 1.8E-19 6.2E-24 157.7 16.2 155 237-409 2-162 (164)
34 1z0j_A RAB-22, RAS-related pro 99.8 3.2E-19 1.1E-23 156.6 17.7 155 237-408 8-168 (170)
35 1ky3_A GTP-binding protein YPT 99.8 1.3E-19 4.5E-24 160.9 15.3 160 236-409 9-178 (182)
36 1wxq_A GTP-binding protein; st 99.8 4.9E-21 1.7E-25 193.8 6.7 163 237-400 2-261 (397)
37 1r2q_A RAS-related protein RAB 99.8 3.2E-19 1.1E-23 156.4 17.4 156 237-409 8-169 (170)
38 1z0f_A RAB14, member RAS oncog 99.8 4E-19 1.4E-23 157.3 18.2 156 236-408 16-177 (179)
39 2wjg_A FEOB, ferrous iron tran 99.8 7.7E-20 2.6E-24 164.1 13.7 158 237-411 9-171 (188)
40 2q3h_A RAS homolog gene family 99.8 5.8E-20 2E-24 167.0 12.9 159 234-410 19-196 (201)
41 2qu8_A Putative nucleolar GTP- 99.8 1.6E-19 5.5E-24 168.2 16.1 167 236-410 30-206 (228)
42 2hup_A RAS-related protein RAB 99.8 2.8E-19 9.5E-24 163.4 17.2 159 236-411 30-195 (201)
43 1zj6_A ADP-ribosylation factor 99.8 2.1E-19 7.2E-24 161.6 16.2 159 236-412 17-181 (187)
44 1upt_A ARL1, ADP-ribosylation 99.8 2.1E-19 7.3E-24 158.1 15.8 157 235-409 7-169 (171)
45 4bas_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 164.4 14.3 161 236-411 18-191 (199)
46 2ew1_A RAS-related protein RAB 99.8 1.3E-19 4.5E-24 166.1 14.9 158 236-410 27-190 (201)
47 3b1v_A Ferrous iron uptake tra 99.8 7.7E-20 2.6E-24 176.0 13.7 156 236-409 4-164 (272)
48 3a1s_A Iron(II) transport prot 99.8 5.9E-20 2E-24 175.4 12.6 155 237-408 7-166 (258)
49 2a9k_A RAS-related protein RAL 99.8 5.1E-19 1.7E-23 157.8 18.0 157 237-410 20-182 (187)
50 1zbd_A Rabphilin-3A; G protein 99.8 4.4E-19 1.5E-23 161.4 17.8 157 236-409 9-171 (203)
51 3cph_A RAS-related protein SEC 99.8 8.7E-20 3E-24 167.0 13.1 158 235-409 20-182 (213)
52 2fn4_A P23, RAS-related protei 99.8 1.4E-19 4.7E-24 160.6 14.0 159 237-412 11-175 (181)
53 1x3s_A RAS-related protein RAB 99.8 1.3E-19 4.3E-24 163.3 13.9 158 237-410 17-179 (195)
54 2lkc_A Translation initiation 99.8 6.3E-20 2.1E-24 162.8 11.7 157 235-411 8-173 (178)
55 3cbq_A GTP-binding protein REM 99.8 4.5E-19 1.5E-23 161.5 17.7 161 236-411 24-190 (195)
56 2fg5_A RAB-22B, RAS-related pr 99.8 2.9E-19 1E-23 161.7 16.4 156 237-411 25-188 (192)
57 2bcg_Y Protein YP2, GTP-bindin 99.8 2.1E-19 7.1E-24 164.1 15.4 157 236-409 9-171 (206)
58 1jal_A YCHF protein; nucleotid 99.8 1.6E-19 5.5E-24 179.8 15.8 173 236-408 3-278 (363)
59 2bme_A RAB4A, RAS-related prot 99.8 3E-19 1E-23 159.7 15.9 157 236-409 11-173 (186)
60 2bov_A RAla, RAS-related prote 99.8 1.1E-18 3.9E-23 158.5 19.8 157 236-409 15-177 (206)
61 2gf9_A RAS-related protein RAB 99.8 2.1E-19 7.3E-24 161.8 14.6 157 236-409 23-185 (189)
62 2fu5_C RAS-related protein RAB 99.8 6.4E-20 2.2E-24 163.9 11.1 157 236-409 9-171 (183)
63 1mky_A Probable GTP-binding pr 99.8 2.2E-19 7.6E-24 184.1 16.6 161 236-410 2-167 (439)
64 2h57_A ADP-ribosylation factor 99.8 1.2E-19 4E-24 163.7 12.8 160 236-411 22-189 (190)
65 2iwr_A Centaurin gamma 1; ANK 99.8 6.8E-19 2.3E-23 156.5 17.5 153 237-410 9-170 (178)
66 1zd9_A ADP-ribosylation factor 99.8 3.8E-19 1.3E-23 160.4 16.0 158 236-410 23-186 (188)
67 1m2o_B GTP-binding protein SAR 99.8 1.6E-19 5.5E-24 163.5 13.3 152 236-406 24-189 (190)
68 2p5s_A RAS and EF-hand domain 99.8 4.5E-19 1.6E-23 161.3 16.3 158 235-409 28-197 (199)
69 2ce2_X GTPase HRAS; signaling 99.8 1.9E-18 6.7E-23 150.4 19.7 156 237-409 5-165 (166)
70 3bc1_A RAS-related protein RAB 99.8 6.2E-19 2.1E-23 158.1 16.9 158 237-410 13-186 (195)
71 2a5j_A RAS-related protein RAB 99.8 3.6E-19 1.2E-23 160.8 15.4 156 237-409 23-184 (191)
72 1vg8_A RAS-related protein RAB 99.8 2.8E-19 9.5E-24 162.9 14.6 160 236-409 9-175 (207)
73 3dz8_A RAS-related protein RAB 99.8 1.8E-19 6.2E-24 162.8 12.8 159 235-410 23-187 (191)
74 2oil_A CATX-8, RAS-related pro 99.8 6.8E-19 2.3E-23 158.9 16.6 157 236-409 26-188 (193)
75 3t5g_A GTP-binding protein RHE 99.8 3E-19 1E-23 159.2 14.0 158 237-411 8-171 (181)
76 3q72_A GTP-binding protein RAD 99.8 1E-19 3.6E-24 159.5 10.7 155 236-409 3-164 (166)
77 2dby_A GTP-binding protein; GD 99.8 3.8E-19 1.3E-23 177.9 15.9 89 236-324 2-111 (368)
78 2gf0_A GTP-binding protein DI- 99.8 4.1E-19 1.4E-23 160.6 14.7 159 236-410 9-172 (199)
79 2e87_A Hypothetical protein PH 99.8 1E-18 3.5E-23 174.4 18.9 168 234-410 166-337 (357)
80 1z06_A RAS-related protein RAB 99.8 8E-19 2.7E-23 158.1 16.4 157 236-408 21-187 (189)
81 3con_A GTPase NRAS; structural 99.8 1.2E-18 3.9E-23 156.8 17.4 159 237-412 23-186 (190)
82 1ksh_A ARF-like protein 2; sma 99.8 2.7E-19 9.1E-24 160.5 13.2 157 236-410 19-181 (186)
83 1fzq_A ADP-ribosylation factor 99.8 6.4E-19 2.2E-23 158.2 15.4 155 236-409 17-178 (181)
84 1f6b_A SAR1; gtpases, N-termin 99.8 1.7E-19 5.8E-24 164.6 11.8 153 237-407 27-197 (198)
85 1mh1_A RAC1; GTP-binding, GTPa 99.8 4E-19 1.4E-23 158.5 14.0 157 237-411 7-182 (186)
86 3reg_A RHO-like small GTPase; 99.8 6E-19 2E-23 159.6 15.1 157 237-411 25-190 (194)
87 2nzj_A GTP-binding protein REM 99.8 1.1E-18 3.8E-23 154.1 16.4 159 237-410 6-170 (175)
88 3kkq_A RAS-related protein M-R 99.8 2E-18 6.7E-23 154.2 18.1 156 237-409 20-182 (183)
89 3pqc_A Probable GTP-binding pr 99.8 1.3E-18 4.3E-23 156.5 16.8 160 234-409 22-194 (195)
90 2b6h_A ADP-ribosylation factor 99.8 7.3E-19 2.5E-23 159.5 15.3 154 237-408 31-190 (192)
91 2h17_A ADP-ribosylation factor 99.8 2.7E-19 9.3E-24 160.2 12.2 153 236-406 22-180 (181)
92 2atx_A Small GTP binding prote 99.8 8.3E-19 2.8E-23 158.5 15.3 154 237-408 20-192 (194)
93 2o52_A RAS-related protein RAB 99.8 4.5E-19 1.6E-23 161.7 13.6 157 236-409 26-188 (200)
94 3k53_A Ferrous iron transport 99.8 4.1E-19 1.4E-23 170.4 13.5 159 236-411 4-168 (271)
95 2f7s_A C25KG, RAS-related prot 99.8 1.8E-18 6E-23 159.3 17.1 158 236-409 26-199 (217)
96 2j1l_A RHO-related GTP-binding 99.8 9.5E-19 3.3E-23 161.4 15.2 157 237-411 36-211 (214)
97 4dkx_A RAS-related protein RAB 99.8 1.8E-18 6.2E-23 160.8 17.1 155 237-409 15-176 (216)
98 3lxw_A GTPase IMAP family memb 99.8 1.6E-18 5.6E-23 164.2 16.9 166 237-412 23-211 (247)
99 1svi_A GTP-binding protein YSX 99.8 1.3E-18 4.3E-23 157.1 15.3 158 235-408 23-194 (195)
100 2j0v_A RAC-like GTP-binding pr 99.8 5.7E-19 2E-23 161.9 13.2 157 237-411 11-182 (212)
101 3gee_A MNME, tRNA modification 99.8 1.5E-19 5.2E-24 186.8 10.3 164 233-408 231-397 (476)
102 3cpj_B GTP-binding protein YPT 99.8 7.2E-19 2.5E-23 163.1 13.8 158 236-410 14-177 (223)
103 2fv8_A H6, RHO-related GTP-bin 99.8 6.5E-19 2.2E-23 161.4 13.3 156 236-409 26-200 (207)
104 4dcu_A GTP-binding protein ENG 99.8 7.1E-19 2.4E-23 181.2 14.6 165 234-411 194-371 (456)
105 1moz_A ARL1, ADP-ribosylation 99.8 2.5E-19 8.7E-24 159.8 9.8 156 236-409 19-180 (183)
106 2atv_A RERG, RAS-like estrogen 99.8 3.5E-18 1.2E-22 154.9 17.4 156 237-410 30-192 (196)
107 3bwd_D RAC-like GTP-binding pr 99.8 3.3E-19 1.1E-23 158.7 9.9 156 235-408 8-180 (182)
108 4gzl_A RAS-related C3 botulinu 99.8 6.5E-19 2.2E-23 161.3 11.9 154 236-407 31-203 (204)
109 3oes_A GTPase rhebl1; small GT 99.8 5.8E-19 2E-23 160.8 11.5 160 236-412 25-190 (201)
110 1ega_A Protein (GTP-binding pr 99.8 4.2E-19 1.5E-23 173.2 11.2 157 237-410 10-176 (301)
111 2gco_A H9, RHO-related GTP-bin 99.8 1.9E-18 6.5E-23 157.6 14.9 154 237-408 27-199 (201)
112 3t1o_A Gliding protein MGLA; G 99.8 8.4E-19 2.9E-23 157.8 12.2 160 237-410 16-193 (198)
113 3ihw_A Centg3; RAS, centaurin, 99.8 5.3E-18 1.8E-22 152.8 17.4 152 237-410 22-181 (184)
114 2x77_A ADP-ribosylation factor 99.8 4.8E-19 1.6E-23 159.4 10.3 157 236-410 23-185 (189)
115 2hjg_A GTP-binding protein ENG 99.8 1.1E-18 3.8E-23 178.7 14.2 163 235-410 175-350 (436)
116 4djt_A GTP-binding nuclear pro 99.8 6.4E-19 2.2E-23 162.3 11.0 158 237-411 13-177 (218)
117 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-18 4.5E-23 180.8 13.5 159 236-413 323-488 (497)
118 3c5c_A RAS-like protein 12; GD 99.8 6.9E-18 2.4E-22 152.2 16.5 155 237-408 23-185 (187)
119 1mky_A Probable GTP-binding pr 99.8 4.5E-18 1.5E-22 174.3 16.7 163 235-410 180-356 (439)
120 2yc2_C IFT27, small RAB-relate 99.8 8.1E-19 2.8E-23 159.6 9.2 158 237-409 22-192 (208)
121 1m7b_A RND3/RHOE small GTP-bin 99.8 2.7E-18 9.2E-23 154.1 12.5 153 237-407 9-181 (184)
122 3q3j_B RHO-related GTP-binding 99.8 4E-18 1.4E-22 157.5 13.5 157 236-411 28-205 (214)
123 3l0i_B RAS-related protein RAB 99.8 2.8E-20 9.6E-25 169.4 -1.0 157 236-409 34-196 (199)
124 2fh5_B SR-beta, signal recogni 99.8 6.7E-18 2.3E-22 155.0 15.0 156 236-407 8-214 (214)
125 2hjg_A GTP-binding protein ENG 99.8 8.1E-19 2.8E-23 179.7 9.0 161 236-410 4-166 (436)
126 3geh_A MNME, tRNA modification 99.8 3.6E-19 1.2E-23 183.3 6.2 163 233-411 222-386 (462)
127 1gwn_A RHO-related GTP-binding 99.8 3.7E-18 1.3E-22 156.8 12.0 154 236-407 29-202 (205)
128 3o47_A ADP-ribosylation factor 99.7 7.6E-18 2.6E-22 166.3 14.3 157 236-410 166-328 (329)
129 2cxx_A Probable GTP-binding pr 99.7 1.4E-17 4.7E-22 149.2 14.7 162 236-412 2-187 (190)
130 3lxx_A GTPase IMAP family memb 99.7 1.6E-17 5.5E-22 156.0 15.7 164 236-410 30-215 (239)
131 3r7w_A Gtpase1, GTP-binding pr 99.7 2E-17 6.7E-22 161.8 16.7 160 237-406 5-178 (307)
132 2g3y_A GTP-binding protein GEM 99.7 2.1E-17 7.3E-22 153.0 15.8 157 236-409 38-203 (211)
133 2cjw_A GTP-binding protein GEM 99.7 5.8E-17 2E-21 147.1 17.4 159 236-409 7-172 (192)
134 3llu_A RAS-related GTP-binding 99.7 6.7E-17 2.3E-21 146.7 17.1 157 235-407 20-195 (196)
135 1wb1_A Translation elongation 99.7 3.2E-17 1.1E-21 169.9 16.3 153 236-408 20-188 (482)
136 3qq5_A Small GTP-binding prote 99.7 3.9E-18 1.3E-22 173.6 9.0 159 236-410 35-197 (423)
137 3gj0_A GTP-binding nuclear pro 99.7 2.4E-18 8.2E-23 159.1 6.6 156 237-410 17-176 (221)
138 4dcu_A GTP-binding protein ENG 99.7 5.8E-18 2E-22 174.4 9.2 162 235-410 23-186 (456)
139 2zej_A Dardarin, leucine-rich 99.7 3.9E-17 1.3E-21 146.7 13.5 159 237-411 4-180 (184)
140 3sjy_A Translation initiation 99.7 5.8E-17 2E-21 164.3 15.8 158 236-411 9-194 (403)
141 2xtp_A GTPase IMAP family memb 99.7 2.5E-17 8.5E-22 156.5 11.9 167 236-411 23-210 (260)
142 2f9l_A RAB11B, member RAS onco 99.7 3.1E-17 1.1E-21 149.3 12.0 156 237-409 7-168 (199)
143 3th5_A RAS-related C3 botulinu 99.6 6E-19 2E-23 161.0 0.0 154 236-407 31-203 (204)
144 2wkq_A NPH1-1, RAS-related C3 99.7 3.8E-17 1.3E-21 159.7 12.8 158 233-408 153-329 (332)
145 3tr5_A RF-3, peptide chain rel 99.7 5.6E-17 1.9E-21 169.6 12.9 125 234-378 12-160 (528)
146 1ni3_A YCHF GTPase, YCHF GTP-b 99.7 3.1E-16 1.1E-20 157.9 17.8 93 232-324 17-127 (392)
147 3t5d_A Septin-7; GTP-binding p 99.7 1.4E-16 5E-21 152.9 14.0 160 237-409 10-204 (274)
148 1oix_A RAS-related protein RAB 99.7 9.6E-17 3.3E-21 145.4 12.0 155 236-407 30-190 (191)
149 1kk1_A EIF2gamma; initiation o 99.7 3E-16 1E-20 159.3 16.9 157 236-410 11-201 (410)
150 3j2k_7 ERF3, eukaryotic polype 99.7 3.2E-16 1.1E-20 160.6 16.6 154 235-401 17-217 (439)
151 3dpu_A RAB family protein; roc 99.7 2.4E-17 8.1E-22 173.1 7.9 156 236-411 42-210 (535)
152 2c78_A Elongation factor TU-A; 99.7 2.8E-16 9.5E-21 159.4 14.3 155 236-410 12-213 (405)
153 1s0u_A EIF-2-gamma, translatio 99.7 3.5E-16 1.2E-20 158.8 14.8 157 236-410 9-199 (408)
154 2elf_A Protein translation elo 99.7 7.7E-16 2.6E-20 154.3 15.3 143 237-409 23-180 (370)
155 2ywe_A GTP-binding protein LEP 99.6 1.3E-15 4.3E-20 161.1 16.2 158 234-411 5-186 (600)
156 3p26_A Elongation factor 1 alp 99.6 4.4E-16 1.5E-20 161.4 12.5 151 236-398 34-227 (483)
157 2ohf_A Protein OLA1, GTP-bindi 99.6 5.3E-16 1.8E-20 156.0 12.3 116 232-347 19-154 (396)
158 3cb4_D GTP-binding protein LEP 99.6 1.6E-15 5.4E-20 160.5 16.5 157 235-411 4-184 (599)
159 1jwy_B Dynamin A GTPase domain 99.6 1.1E-15 3.7E-20 149.0 13.1 167 234-411 23-264 (315)
160 3izy_P Translation initiation 99.6 1.6E-17 5.3E-22 173.5 -0.6 156 234-409 3-168 (537)
161 2aka_B Dynamin-1; fusion prote 99.6 3.7E-16 1.3E-20 151.0 9.1 161 234-406 25-250 (299)
162 1d2e_A Elongation factor TU (E 99.6 1.6E-15 5.6E-20 153.4 14.1 154 237-410 5-196 (397)
163 3c5h_A Glucocorticoid receptor 99.6 7.2E-16 2.4E-20 146.6 10.2 166 236-408 20-254 (255)
164 1pui_A ENGB, probable GTP-bind 99.6 2E-15 6.9E-20 137.8 12.5 165 231-411 22-201 (210)
165 3izq_1 HBS1P, elongation facto 99.6 1.2E-15 4E-20 162.3 12.5 155 233-399 165-362 (611)
166 1zun_B Sulfate adenylate trans 99.6 3.7E-15 1.3E-19 152.4 15.3 143 237-398 26-213 (434)
167 2www_A Methylmalonic aciduria 99.6 7.3E-15 2.5E-19 146.1 13.6 148 235-409 74-279 (349)
168 1nrj_B SR-beta, signal recogni 99.6 9.4E-15 3.2E-19 134.3 11.2 142 235-395 12-170 (218)
169 1dar_A EF-G, elongation factor 99.6 3.8E-14 1.3E-18 152.9 17.1 124 235-378 12-155 (691)
170 1jny_A EF-1-alpha, elongation 99.6 3.9E-15 1.3E-19 152.3 8.9 145 236-399 7-203 (435)
171 3mca_A HBS1, elongation factor 99.6 3.2E-16 1.1E-20 166.2 0.7 161 235-408 177-396 (592)
172 2xex_A Elongation factor G; GT 99.6 3.8E-14 1.3E-18 152.9 16.9 124 235-378 10-153 (693)
173 2h5e_A Peptide chain release f 99.6 4.3E-14 1.5E-18 147.8 16.7 115 235-369 13-149 (529)
174 1f60_A Elongation factor EEF1A 99.6 9.6E-15 3.3E-19 150.4 11.3 143 237-399 9-202 (458)
175 1zo1_I IF2, translation initia 99.6 1.3E-16 4.4E-21 165.4 -2.9 152 235-406 4-164 (501)
176 2dy1_A Elongation factor G; tr 99.6 5.3E-14 1.8E-18 151.2 17.3 127 232-378 6-151 (665)
177 1g7s_A Translation initiation 99.5 9.7E-15 3.3E-19 154.5 10.6 155 235-409 5-218 (594)
178 3def_A T7I23.11 protein; chlor 99.5 4.8E-14 1.7E-18 134.4 14.3 120 237-367 38-164 (262)
179 2j69_A Bacterial dynamin-like 99.5 2.3E-14 7.9E-19 154.6 13.5 159 235-409 69-325 (695)
180 1h65_A Chloroplast outer envel 99.5 2.1E-13 7.1E-18 130.5 18.7 126 237-369 41-169 (270)
181 3avx_A Elongation factor TS, e 99.5 3.7E-14 1.3E-18 157.3 13.9 154 236-409 297-486 (1289)
182 3p32_A Probable GTPase RV1496/ 99.5 3.8E-14 1.3E-18 141.2 11.8 103 280-409 170-284 (355)
183 2rdo_7 EF-G, elongation factor 99.5 2.6E-13 8.8E-18 146.6 18.9 116 234-369 9-149 (704)
184 1r5b_A Eukaryotic peptide chai 99.5 1.3E-14 4.3E-19 149.9 8.2 152 236-400 44-243 (467)
185 3vqt_A RF-3, peptide chain rel 99.5 1.6E-13 5.5E-18 144.1 15.7 125 234-378 30-178 (548)
186 2qag_A Septin-2, protein NEDD5 99.5 4.9E-14 1.7E-18 140.8 10.7 156 237-407 39-231 (361)
187 3t34_A Dynamin-related protein 99.5 4.3E-14 1.5E-18 141.0 9.6 158 234-402 33-254 (360)
188 2ged_A SR-beta, signal recogni 99.5 1.2E-13 4.1E-18 124.1 11.3 122 234-369 47-171 (193)
189 2x2e_A Dynamin-1; nitration, h 99.5 1.9E-14 6.4E-19 143.3 6.1 160 234-405 30-254 (353)
190 2qm8_A GTPase/ATPase; G protei 99.5 3.4E-14 1.2E-18 140.6 6.6 153 229-408 49-260 (337)
191 3zvr_A Dynamin-1; hydrolase, D 99.5 5.1E-14 1.7E-18 151.8 8.1 161 233-405 49-274 (772)
192 2p67_A LAO/AO transport system 99.5 6.7E-14 2.3E-18 138.7 8.4 149 233-408 54-260 (341)
193 3r7w_B Gtpase2, GTP-binding pr 99.5 3.2E-13 1.1E-17 132.3 12.9 157 237-407 1-172 (331)
194 2qpt_A EH domain-containing pr 99.4 1.4E-12 4.9E-17 137.0 12.9 128 234-373 64-237 (550)
195 2wsm_A Hydrogenase expression/ 99.4 1.4E-12 4.9E-17 119.9 10.5 151 234-411 29-216 (221)
196 3j25_A Tetracycline resistance 99.4 8E-13 2.7E-17 141.3 9.3 157 235-411 2-241 (638)
197 1yrb_A ATP(GTP)binding protein 99.3 6.3E-12 2.2E-16 118.8 13.3 118 282-409 109-257 (262)
198 2qnr_A Septin-2, protein NEDD5 99.3 7.7E-12 2.6E-16 121.7 10.2 160 237-410 20-215 (301)
199 4fn5_A EF-G 1, elongation fact 99.2 9E-11 3.1E-15 127.0 17.0 116 233-368 11-151 (709)
200 1n0u_A EF-2, elongation factor 99.2 1.2E-11 4E-16 136.1 9.9 112 236-367 20-163 (842)
201 2hf9_A Probable hydrogenase ni 99.2 6.4E-11 2.2E-15 109.2 12.7 57 354-410 164-225 (226)
202 2qag_C Septin-7; cell cycle, c 99.2 4.2E-11 1.4E-15 121.5 10.7 158 237-408 33-226 (418)
203 1tq4_A IIGP1, interferon-induc 99.1 3E-10 1E-14 114.9 12.4 154 237-412 71-256 (413)
204 3ec1_A YQEH GTPase; atnos1, at 99.1 1.7E-11 5.7E-16 122.7 3.0 145 236-397 163-319 (369)
205 3h2y_A GTPase family protein; 99.0 6.3E-11 2.2E-15 118.5 2.6 143 236-395 161-316 (368)
206 2qag_B Septin-6, protein NEDD5 98.9 1.6E-09 5.5E-14 109.8 9.1 150 227-391 32-218 (427)
207 2pcj_A ABC transporter, lipopr 98.9 2.4E-09 8.2E-14 99.6 9.3 149 226-390 21-198 (224)
208 1sgw_A Putative ABC transporte 98.9 3.2E-09 1.1E-13 98.2 8.5 150 225-391 25-192 (214)
209 2olj_A Amino acid ABC transpor 98.9 3.6E-09 1.2E-13 100.8 8.8 149 226-390 41-217 (263)
210 2j37_W Signal recognition part 98.9 1.8E-09 6.3E-14 111.8 7.0 152 235-406 101-310 (504)
211 3tui_C Methionine import ATP-b 98.9 6E-09 2.1E-13 103.6 10.4 150 226-391 45-223 (366)
212 3tif_A Uncharacterized ABC tra 98.9 2.3E-09 7.8E-14 100.5 6.8 150 226-391 22-205 (235)
213 1vpl_A ABC transporter, ATP-bi 98.9 4.6E-09 1.6E-13 99.8 8.5 149 226-390 32-204 (256)
214 1b0u_A Histidine permease; ABC 98.8 4.8E-09 1.7E-13 99.9 7.3 149 226-390 23-211 (262)
215 2onk_A Molybdate/tungstate ABC 98.8 3.3E-09 1.1E-13 99.7 6.1 150 225-391 15-186 (240)
216 1ji0_A ABC transporter; ATP bi 98.8 6.5E-09 2.2E-13 97.7 8.0 150 226-391 23-198 (240)
217 1cip_A Protein (guanine nucleo 98.8 8.3E-09 2.8E-13 102.5 8.9 133 269-409 180-344 (353)
218 3gfo_A Cobalt import ATP-bindi 98.8 7.3E-09 2.5E-13 99.4 7.6 151 225-391 24-203 (275)
219 3sop_A Neuronal-specific septi 98.8 2.5E-08 8.5E-13 95.4 11.0 122 237-371 4-157 (270)
220 3d31_A Sulfate/molybdate ABC t 98.8 1.1E-08 3.8E-13 101.3 8.7 150 224-390 15-186 (348)
221 1z47_A CYSA, putative ABC-tran 98.8 7.8E-09 2.7E-13 102.6 7.5 150 225-390 31-204 (355)
222 3fvq_A Fe(3+) IONS import ATP- 98.8 8.4E-09 2.9E-13 102.4 7.7 150 226-391 21-198 (359)
223 2it1_A 362AA long hypothetical 98.8 1.4E-08 4.7E-13 101.1 9.1 150 226-391 20-193 (362)
224 2nq2_C Hypothetical ABC transp 98.8 7.8E-09 2.7E-13 98.0 7.0 148 225-390 21-187 (253)
225 1oxx_K GLCV, glucose, ABC tran 98.7 1.6E-08 5.6E-13 100.3 8.0 150 226-391 22-200 (353)
226 1g6h_A High-affinity branched- 98.7 5.4E-09 1.8E-13 99.3 4.2 45 226-281 24-68 (257)
227 3rlf_A Maltose/maltodextrin im 98.7 1.3E-08 4.6E-13 101.7 7.1 150 226-391 20-193 (381)
228 2yyz_A Sugar ABC transporter, 98.7 1.6E-08 5.6E-13 100.4 7.6 149 226-390 20-192 (359)
229 1zcb_A G alpha I/13; GTP-bindi 98.7 2.6E-08 8.8E-13 99.2 8.6 132 270-409 189-353 (362)
230 1g29_1 MALK, maltose transport 98.7 2.3E-08 7.9E-13 99.9 7.7 150 226-391 20-199 (372)
231 4g1u_C Hemin import ATP-bindin 98.7 1.1E-08 3.6E-13 97.8 5.0 149 226-390 28-206 (266)
232 2yz2_A Putative ABC transporte 98.7 1E-08 3.4E-13 97.9 4.8 145 226-391 24-197 (266)
233 2qi9_C Vitamin B12 import ATP- 98.7 5.6E-09 1.9E-13 98.7 3.0 149 225-390 16-191 (249)
234 1v43_A Sugar-binding transport 98.6 1.9E-08 6.6E-13 100.4 5.9 148 226-391 28-201 (372)
235 2ixe_A Antigen peptide transpo 98.6 6.2E-08 2.1E-12 92.6 8.9 150 225-390 35-215 (271)
236 2d2e_A SUFC protein; ABC-ATPas 98.6 3.5E-08 1.2E-12 93.2 7.0 152 226-391 20-202 (250)
237 2pjz_A Hypothetical protein ST 98.6 2.7E-08 9.1E-13 94.8 5.8 140 226-391 22-184 (263)
238 2ff7_A Alpha-hemolysin translo 98.6 1.3E-07 4.3E-12 89.2 10.2 150 225-391 25-203 (247)
239 4fid_A G protein alpha subunit 98.6 6.5E-08 2.2E-12 95.3 8.2 133 269-409 148-328 (340)
240 1u0l_A Probable GTPase ENGC; p 98.6 1.5E-07 5.2E-12 91.2 10.7 103 282-404 63-168 (301)
241 2zu0_C Probable ATP-dependent 98.6 8.6E-08 2.9E-12 91.5 8.6 152 226-391 37-223 (267)
242 2ihy_A ABC transporter, ATP-bi 98.6 3.3E-08 1.1E-12 94.9 4.8 46 226-282 38-83 (279)
243 1azs_C GS-alpha; complex (lyas 98.6 9.5E-08 3.2E-12 96.2 8.0 128 274-409 209-385 (402)
244 2cbz_A Multidrug resistance-as 98.5 8.7E-08 3E-12 89.8 7.0 149 225-391 21-188 (237)
245 1mv5_A LMRA, multidrug resista 98.5 1.1E-07 3.8E-12 89.4 7.8 34 225-258 18-51 (243)
246 3nh6_A ATP-binding cassette SU 98.5 6.8E-08 2.3E-12 94.0 6.1 151 225-391 70-248 (306)
247 1puj_A YLQF, conserved hypothe 98.5 5.9E-08 2E-12 93.3 5.6 58 236-296 121-179 (282)
248 2pze_A Cystic fibrosis transme 98.5 4.6E-08 1.6E-12 91.2 4.3 149 225-390 24-188 (229)
249 2xtz_A Guanine nucleotide-bind 98.5 9.6E-08 3.3E-12 94.8 6.8 121 281-409 182-345 (354)
250 3ohm_A Guanine nucleotide-bind 98.5 2E-07 6.7E-12 91.5 8.6 133 270-410 155-319 (327)
251 1f5n_A Interferon-induced guan 98.5 2.3E-07 7.8E-12 97.7 8.7 60 236-296 39-105 (592)
252 2ghi_A Transport protein; mult 98.5 3E-07 1E-11 87.3 8.4 149 225-391 36-213 (260)
253 1puj_A YLQF, conserved hypothe 98.4 6.1E-07 2.1E-11 86.2 9.9 102 286-409 3-106 (282)
254 2v3c_C SRP54, signal recogniti 98.4 3.1E-07 1.1E-11 93.5 8.1 152 236-408 100-310 (432)
255 3dm5_A SRP54, signal recogniti 98.4 3.5E-07 1.2E-11 93.0 7.8 142 236-398 101-280 (443)
256 3szr_A Interferon-induced GTP- 98.4 7.5E-07 2.6E-11 94.6 10.3 25 235-259 45-69 (608)
257 2bbs_A Cystic fibrosis transme 98.4 5.1E-08 1.7E-12 94.2 0.6 150 225-391 54-218 (290)
258 2yhs_A FTSY, cell division pro 98.4 4.2E-07 1.4E-11 93.4 7.3 152 226-399 284-480 (503)
259 3gd7_A Fusion complex of cysti 98.3 8.8E-08 3E-12 96.2 1.3 149 225-391 37-213 (390)
260 2yv5_A YJEQ protein; hydrolase 98.3 1.2E-06 3.9E-11 85.1 8.8 85 309-404 76-164 (302)
261 2yl4_A ATP-binding cassette SU 98.3 1.1E-06 3.8E-11 93.0 8.1 151 225-391 360-541 (595)
262 3e70_C DPA, signal recognition 98.3 1.1E-06 3.7E-11 86.3 7.5 144 234-399 128-310 (328)
263 3cnl_A YLQF, putative uncharac 98.3 4.8E-07 1.6E-11 86.0 4.4 58 236-296 100-158 (262)
264 3b5x_A Lipid A export ATP-bind 98.2 1.2E-06 4E-11 92.6 7.4 151 225-391 359-538 (582)
265 3kl4_A SRP54, signal recogniti 98.2 3.1E-06 1.1E-10 85.9 10.1 142 236-397 98-278 (433)
266 3qf4_A ABC transporter, ATP-bi 98.2 1.6E-06 5.6E-11 91.6 8.2 151 225-391 359-537 (587)
267 4f4c_A Multidrug resistance pr 98.2 3E-07 1E-11 105.8 2.3 152 225-392 1095-1276(1321)
268 4a82_A Cystic fibrosis transme 98.2 1.3E-06 4.4E-11 92.2 6.8 151 225-391 357-535 (578)
269 3bk7_A ABC transporter ATP-bin 98.2 9E-07 3.1E-11 93.8 5.4 143 230-390 377-530 (607)
270 3l82_B F-box only protein 4; T 98.2 2.3E-06 7.7E-11 78.3 7.0 101 302-410 115-224 (227)
271 3b60_A Lipid A export ATP-bind 98.2 9.3E-07 3.2E-11 93.4 5.0 150 225-391 359-538 (582)
272 1yqt_A RNAse L inhibitor; ATP- 98.2 7.5E-07 2.6E-11 93.2 3.9 143 230-390 307-460 (538)
273 3ozx_A RNAse L inhibitor; ATP 98.2 1.7E-06 5.9E-11 90.4 6.6 141 229-390 288-444 (538)
274 1rj9_A FTSY, signal recognitio 98.2 5E-06 1.7E-10 80.7 9.2 24 235-258 102-125 (304)
275 3qf4_B Uncharacterized ABC tra 98.1 6E-07 2.1E-11 95.2 2.7 150 226-391 372-549 (598)
276 3ec1_A YQEH GTPase; atnos1, at 98.1 4.5E-06 1.5E-10 83.2 8.5 89 305-408 63-161 (369)
277 1j8m_F SRP54, signal recogniti 98.1 7.3E-06 2.5E-10 79.3 9.3 151 228-399 92-281 (297)
278 3h2y_A GTPase family protein; 98.1 7.4E-06 2.5E-10 81.6 9.0 89 305-408 61-159 (368)
279 4f4c_A Multidrug resistance pr 98.0 1.5E-05 5.2E-10 91.6 10.5 151 225-391 434-612 (1321)
280 1vma_A Cell division protein F 98.0 1.9E-05 6.5E-10 76.6 9.5 29 230-258 99-127 (306)
281 3g5u_A MCG1178, multidrug resi 98.0 8E-06 2.7E-10 93.7 7.9 151 225-391 406-584 (1284)
282 3cnl_A YLQF, putative uncharac 98.0 6.2E-06 2.1E-10 78.3 5.5 86 302-406 11-98 (262)
283 3l2o_B F-box only protein 4; s 98.0 1.7E-05 6E-10 75.8 8.5 105 302-411 200-310 (312)
284 3g5u_A MCG1178, multidrug resi 98.0 7.1E-06 2.4E-10 94.1 6.9 151 226-392 1050-1230(1284)
285 1nij_A Hypothetical protein YJ 98.0 4.6E-06 1.6E-10 81.4 4.5 45 355-400 151-196 (318)
286 2og2_A Putative signal recogni 97.9 3.2E-05 1.1E-09 76.7 10.2 32 227-258 149-180 (359)
287 3q5d_A Atlastin-1; G protein, 97.9 1.2E-05 4.1E-10 81.9 6.2 60 236-295 68-153 (447)
288 3ozx_A RNAse L inhibitor; ATP 97.9 5.8E-06 2E-10 86.4 3.7 54 333-391 139-196 (538)
289 1zu4_A FTSY; GTPase, signal re 97.9 5.1E-05 1.7E-09 74.1 10.2 151 227-399 97-296 (320)
290 3j16_B RLI1P; ribosome recycli 97.8 6.6E-06 2.2E-10 87.2 3.6 144 227-390 365-526 (608)
291 1yqt_A RNAse L inhibitor; ATP- 97.8 4.9E-06 1.7E-10 87.0 2.1 54 333-391 159-217 (538)
292 3j16_B RLI1P; ribosome recycli 97.8 4E-06 1.4E-10 88.8 1.3 29 231-259 99-127 (608)
293 3bk7_A ABC transporter ATP-bin 97.7 7.3E-06 2.5E-10 86.8 0.8 54 333-391 229-287 (607)
294 2px0_A Flagellar biosynthesis 97.6 4.7E-05 1.6E-09 73.5 5.8 142 234-396 104-278 (296)
295 1htw_A HI0065; nucleotide-bind 97.6 8.1E-06 2.8E-10 71.5 -0.4 34 227-260 25-58 (158)
296 1t9h_A YLOQ, probable GTPase E 97.5 2.7E-05 9.2E-10 75.6 2.4 58 233-294 171-236 (307)
297 2ffh_A Protein (FFH); SRP54, s 97.5 0.00023 7.9E-09 72.0 9.2 143 234-397 97-277 (425)
298 3b9q_A Chloroplast SRP recepto 97.5 0.00056 1.9E-08 66.1 11.4 31 228-258 93-123 (302)
299 1ls1_A Signal recognition part 97.5 0.00013 4.6E-09 70.2 7.0 144 234-399 97-279 (295)
300 3ux8_A Excinuclease ABC, A sub 97.5 0.0001 3.5E-09 79.0 5.9 27 226-252 35-61 (670)
301 1z6g_A Guanylate kinase; struc 97.4 5.9E-05 2E-09 69.3 3.3 34 226-259 14-47 (218)
302 1t9h_A YLOQ, probable GTPase E 97.4 7.8E-05 2.7E-09 72.3 4.2 82 310-402 84-170 (307)
303 2xxa_A Signal recognition part 97.4 0.0007 2.4E-08 68.7 11.0 22 235-256 100-121 (433)
304 2yv5_A YJEQ protein; hydrolase 97.4 0.00021 7.3E-09 69.0 6.8 57 234-294 164-228 (302)
305 4gp7_A Metallophosphoesterase; 97.4 8.4E-05 2.9E-09 65.4 3.4 30 228-257 2-31 (171)
306 3ney_A 55 kDa erythrocyte memb 97.3 4.3E-05 1.5E-09 69.4 1.1 56 234-291 18-75 (197)
307 1u0l_A Probable GTPase ENGC; p 97.3 9.4E-05 3.2E-09 71.4 3.7 58 234-294 168-233 (301)
308 2rcn_A Probable GTPase ENGC; Y 97.3 0.00011 3.7E-09 72.8 3.5 57 235-294 215-280 (358)
309 3tr0_A Guanylate kinase, GMP k 97.2 0.00015 5.2E-09 64.9 3.6 29 231-259 3-31 (205)
310 2rcn_A Probable GTPase ENGC; Y 97.2 0.0013 4.4E-08 65.0 9.9 82 310-403 128-213 (358)
311 1znw_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 65.0 3.5 29 231-259 16-44 (207)
312 2iw3_A Elongation factor 3A; a 97.1 0.00028 9.5E-09 78.2 4.8 46 225-281 689-734 (986)
313 1s96_A Guanylate kinase, GMP k 97.1 0.00023 8E-09 65.5 2.9 29 232-260 13-41 (219)
314 3lnc_A Guanylate kinase, GMP k 97.0 0.00021 7.2E-09 65.8 2.4 34 226-259 18-52 (231)
315 1kgd_A CASK, peripheral plasma 97.0 0.00031 1.1E-08 62.1 3.2 40 236-275 6-47 (180)
316 2gza_A Type IV secretion syste 97.0 0.00018 6.2E-09 71.2 1.8 33 226-258 166-198 (361)
317 2jeo_A Uridine-cytidine kinase 97.0 0.00029 9.8E-09 65.6 3.0 33 226-258 16-48 (245)
318 2v9p_A Replication protein E1; 97.0 0.00023 7.8E-09 68.9 2.2 33 226-258 117-149 (305)
319 1lvg_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 63.0 3.1 24 235-258 4-27 (198)
320 3euj_A Chromosome partition pr 97.0 0.00019 6.5E-09 73.7 1.5 32 226-258 21-52 (483)
321 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00014 4.9E-09 71.1 0.5 32 227-258 163-194 (330)
322 1ye8_A Protein THEP1, hypothet 96.9 0.00048 1.6E-08 61.2 3.1 22 237-258 2-23 (178)
323 2f1r_A Molybdopterin-guanine d 96.8 0.00028 9.6E-09 62.4 1.2 39 236-285 3-44 (171)
324 1zp6_A Hypothetical protein AT 96.8 0.00061 2.1E-08 60.3 3.2 26 233-258 7-32 (191)
325 2npi_A Protein CLP1; CLP1-PCF1 96.8 0.00027 9.4E-09 72.3 0.7 32 227-258 130-161 (460)
326 3jvv_A Twitching mobility prot 96.8 0.0047 1.6E-07 61.0 9.6 25 234-258 122-146 (356)
327 3b85_A Phosphate starvation-in 96.8 0.00045 1.5E-08 63.1 2.1 27 232-258 19-45 (208)
328 3thx_A DNA mismatch repair pro 96.7 0.0053 1.8E-07 67.9 10.6 30 226-255 653-682 (934)
329 2obl_A ESCN; ATPase, hydrolase 96.7 0.0009 3.1E-08 65.9 3.7 29 230-258 66-94 (347)
330 3a00_A Guanylate kinase, GMP k 96.7 0.00086 2.9E-08 59.5 3.2 23 237-259 3-25 (186)
331 3c8u_A Fructokinase; YP_612366 96.7 0.00078 2.7E-08 60.9 2.9 24 235-258 22-45 (208)
332 2j41_A Guanylate kinase; GMP, 96.6 0.0011 3.6E-08 59.3 3.7 28 232-259 3-30 (207)
333 3vaa_A Shikimate kinase, SK; s 96.6 0.001 3.6E-08 59.6 3.5 32 226-257 16-47 (199)
334 2dpy_A FLII, flagellum-specifi 96.6 0.001 3.5E-08 67.6 3.5 31 227-258 150-180 (438)
335 2eyu_A Twitching motility prot 96.6 0.00064 2.2E-08 64.2 1.7 27 232-258 22-48 (261)
336 2oap_1 GSPE-2, type II secreti 96.5 0.00063 2.2E-08 70.5 1.5 32 227-258 252-283 (511)
337 4dzz_A Plasmid partitioning pr 96.5 0.016 5.4E-07 51.5 10.4 79 282-378 76-156 (206)
338 3tau_A Guanylate kinase, GMP k 96.5 0.0018 6.2E-08 58.6 4.0 26 234-259 7-32 (208)
339 2ehv_A Hypothetical protein PH 96.4 0.0016 5.6E-08 59.8 3.7 26 232-257 27-52 (251)
340 2i3b_A HCR-ntpase, human cance 96.4 0.0015 5.2E-08 58.6 3.3 23 236-258 2-24 (189)
341 3asz_A Uridine kinase; cytidin 96.4 0.0014 4.6E-08 59.1 2.7 24 235-258 6-29 (211)
342 2iw3_A Elongation factor 3A; a 96.4 0.002 7E-08 71.3 4.6 33 226-258 452-484 (986)
343 4eun_A Thermoresistant glucoki 96.4 0.0019 6.6E-08 57.9 3.5 25 234-258 28-52 (200)
344 1kag_A SKI, shikimate kinase I 96.4 0.0019 6.6E-08 56.0 3.4 24 235-258 4-27 (173)
345 3kta_A Chromosome segregation 96.3 0.0023 7.7E-08 56.2 3.8 30 228-258 20-49 (182)
346 4a74_A DNA repair and recombin 96.3 0.0014 5E-08 59.3 2.6 27 232-258 22-48 (231)
347 3aez_A Pantothenate kinase; tr 96.2 0.0019 6.5E-08 62.6 3.1 26 233-258 88-113 (312)
348 1lw7_A Transcriptional regulat 96.2 0.0014 4.9E-08 64.7 2.1 32 227-258 160-193 (365)
349 3ec2_A DNA replication protein 96.2 0.0022 7.4E-08 56.3 2.8 26 233-258 36-61 (180)
350 2bdt_A BH3686; alpha-beta prot 96.1 0.0026 9E-08 56.2 3.1 21 237-257 4-24 (189)
351 4aby_A DNA repair protein RECN 96.1 0.0015 5.1E-08 65.3 1.4 32 226-258 52-83 (415)
352 2bbw_A Adenylate kinase 4, AK4 96.0 0.0037 1.3E-07 57.8 3.7 23 236-258 28-53 (246)
353 3ux8_A Excinuclease ABC, A sub 96.0 0.0024 8.3E-08 68.3 2.5 31 226-256 339-369 (670)
354 1knq_A Gluconate kinase; ALFA/ 95.8 0.0041 1.4E-07 54.1 3.0 23 236-258 9-31 (175)
355 3uie_A Adenylyl-sulfate kinase 95.8 0.0042 1.4E-07 55.6 3.1 24 235-258 25-48 (200)
356 3cwq_A Para family chromosome 95.8 0.086 2.9E-06 47.4 11.7 76 282-378 68-147 (209)
357 1sq5_A Pantothenate kinase; P- 95.8 0.0025 8.7E-08 61.4 1.4 25 234-258 79-103 (308)
358 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0068 2.3E-07 59.9 4.3 28 228-256 17-44 (365)
359 4b4t_L 26S protease subunit RP 95.7 0.031 1.1E-06 56.6 9.1 25 234-258 214-238 (437)
360 1cr0_A DNA primase/helicase; R 95.7 0.0041 1.4E-07 59.2 2.5 30 229-258 29-58 (296)
361 1cke_A CK, MSSA, protein (cyti 95.7 0.006 2.1E-07 55.3 3.6 23 236-258 6-28 (227)
362 1y63_A LMAJ004144AAA protein; 95.7 0.0069 2.3E-07 53.5 3.7 29 230-258 5-33 (184)
363 1np6_A Molybdopterin-guanine d 95.6 0.007 2.4E-07 53.5 3.5 25 234-258 5-29 (174)
364 3nwj_A ATSK2; P loop, shikimat 95.6 0.0035 1.2E-07 58.8 1.4 31 227-257 37-70 (250)
365 4e22_A Cytidylate kinase; P-lo 95.5 0.0078 2.7E-07 56.1 3.8 23 234-256 26-48 (252)
366 2if2_A Dephospho-COA kinase; a 95.5 0.007 2.4E-07 54.0 3.2 21 237-257 3-23 (204)
367 2qt1_A Nicotinamide riboside k 95.5 0.0067 2.3E-07 54.4 3.0 26 233-258 19-44 (207)
368 2x8a_A Nuclear valosin-contain 95.5 0.005 1.7E-07 58.4 2.2 21 238-258 47-67 (274)
369 1jjv_A Dephospho-COA kinase; P 95.5 0.0076 2.6E-07 53.9 3.3 22 237-258 4-25 (206)
370 2ewv_A Twitching motility prot 95.5 0.0064 2.2E-07 60.3 3.0 27 232-258 133-159 (372)
371 2qor_A Guanylate kinase; phosp 95.4 0.0089 3E-07 53.6 3.6 26 233-258 10-35 (204)
372 1ex7_A Guanylate kinase; subst 95.4 0.0029 1E-07 56.6 0.4 39 238-276 4-44 (186)
373 2kjq_A DNAA-related protein; s 95.4 0.0064 2.2E-07 52.2 2.5 24 235-258 36-59 (149)
374 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.0087 3E-07 54.0 3.4 27 232-258 20-46 (235)
375 4b4t_J 26S protease regulatory 95.3 0.08 2.7E-06 52.9 10.5 24 235-258 182-205 (405)
376 1qhl_A Protein (cell division 95.3 0.00041 1.4E-08 64.3 -5.8 28 230-258 23-50 (227)
377 3kb2_A SPBC2 prophage-derived 95.3 0.01 3.5E-07 51.0 3.3 22 237-258 3-24 (173)
378 1tf7_A KAIC; homohexamer, hexa 95.2 0.0048 1.6E-07 64.0 1.4 32 227-258 30-64 (525)
379 2vp4_A Deoxynucleoside kinase; 95.2 0.0063 2.2E-07 55.8 2.0 25 234-258 19-43 (230)
380 4b4t_I 26S protease regulatory 95.2 0.065 2.2E-06 54.0 9.4 24 235-258 216-239 (437)
381 4ido_A Atlastin-1; GTPase, GTP 95.2 0.02 7E-07 58.0 5.7 60 235-294 67-152 (457)
382 1svm_A Large T antigen; AAA+ f 95.1 0.0079 2.7E-07 59.8 2.5 30 229-258 163-192 (377)
383 1rz3_A Hypothetical protein rb 95.1 0.0099 3.4E-07 53.3 2.8 23 236-258 23-45 (201)
384 3t61_A Gluconokinase; PSI-biol 95.1 0.012 4E-07 52.5 3.3 23 236-258 19-41 (202)
385 4b4t_K 26S protease regulatory 95.1 0.048 1.7E-06 55.0 8.1 23 236-258 207-229 (428)
386 1p9r_A General secretion pathw 95.1 0.0099 3.4E-07 59.9 3.0 25 234-258 166-190 (418)
387 1ixz_A ATP-dependent metallopr 95.0 0.0082 2.8E-07 55.6 2.2 21 238-258 52-72 (254)
388 3lw7_A Adenylate kinase relate 95.0 0.013 4.5E-07 50.1 3.3 19 237-255 3-21 (179)
389 2o5v_A DNA replication and rep 95.0 0.013 4.3E-07 57.9 3.5 30 227-257 19-48 (359)
390 1n0w_A DNA repair protein RAD5 94.9 0.015 5E-07 53.0 3.4 26 232-257 21-46 (243)
391 1e69_A Chromosome segregation 94.8 0.015 5E-07 56.3 3.5 29 228-257 18-46 (322)
392 3tqc_A Pantothenate kinase; bi 94.8 0.013 4.5E-07 56.9 3.1 22 237-258 94-115 (321)
393 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.2 6.7E-06 48.3 11.5 22 237-258 47-68 (322)
394 1iy2_A ATP-dependent metallopr 94.8 0.01 3.5E-07 55.9 2.2 21 238-258 76-96 (278)
395 2cvh_A DNA repair and recombin 94.7 0.018 6.3E-07 51.5 3.6 26 232-257 17-42 (220)
396 3cm0_A Adenylate kinase; ATP-b 94.7 0.014 4.7E-07 51.1 2.7 22 236-257 5-26 (186)
397 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.017 5.8E-07 49.4 3.1 20 237-256 25-44 (149)
398 2pez_A Bifunctional 3'-phospho 94.6 0.017 5.7E-07 50.4 3.0 23 236-258 6-28 (179)
399 1xjc_A MOBB protein homolog; s 94.6 0.019 6.7E-07 50.4 3.4 24 235-258 4-27 (169)
400 1wb9_A DNA mismatch repair pro 94.6 0.022 7.6E-07 62.0 4.6 32 226-258 599-630 (800)
401 1ly1_A Polynucleotide kinase; 94.6 0.02 6.8E-07 49.5 3.3 21 237-257 4-24 (181)
402 3end_A Light-independent proto 94.6 0.18 6.3E-06 47.8 10.5 68 282-366 157-225 (307)
403 2v54_A DTMP kinase, thymidylat 94.5 0.023 8E-07 50.3 3.8 24 235-258 4-27 (204)
404 2jaq_A Deoxyguanosine kinase; 94.5 0.021 7.1E-07 50.4 3.3 22 237-258 2-23 (205)
405 3thx_B DNA mismatch repair pro 94.5 0.02 6.9E-07 63.2 3.8 32 226-257 664-695 (918)
406 2rhm_A Putative kinase; P-loop 94.4 0.019 6.6E-07 50.3 2.9 22 236-257 6-27 (193)
407 1in4_A RUVB, holliday junction 94.4 0.021 7E-07 55.5 3.4 23 236-258 52-74 (334)
408 1qhx_A CPT, protein (chloramph 94.4 0.026 8.7E-07 48.9 3.6 23 236-258 4-26 (178)
409 1via_A Shikimate kinase; struc 94.4 0.023 8E-07 49.3 3.3 23 236-258 5-27 (175)
410 1kht_A Adenylate kinase; phosp 94.4 0.026 8.8E-07 49.3 3.6 22 236-257 4-25 (192)
411 2yvu_A Probable adenylyl-sulfa 94.4 0.022 7.4E-07 50.0 3.1 23 236-258 14-36 (186)
412 3trf_A Shikimate kinase, SK; a 94.3 0.026 8.8E-07 49.3 3.6 23 235-257 5-27 (185)
413 3iij_A Coilin-interacting nucl 94.3 0.027 9.1E-07 49.1 3.6 23 235-257 11-33 (180)
414 2c95_A Adenylate kinase 1; tra 94.3 0.024 8.3E-07 49.8 3.4 24 234-257 8-31 (196)
415 4b4t_H 26S protease regulatory 94.3 0.16 5.3E-06 51.7 9.6 25 234-258 242-266 (467)
416 1nks_A Adenylate kinase; therm 94.3 0.021 7.1E-07 49.9 2.8 21 237-257 3-23 (194)
417 4b4t_M 26S protease regulatory 94.2 0.092 3.2E-06 53.0 7.7 25 234-258 214-238 (434)
418 1ewq_A DNA mismatch repair pro 94.1 0.03 1E-06 60.6 4.3 30 226-258 570-599 (765)
419 1odf_A YGR205W, hypothetical 3 94.0 0.026 9E-07 53.9 3.1 23 236-258 32-54 (290)
420 2ygr_A Uvrabc system protein A 94.0 0.02 7E-07 63.3 2.5 32 225-256 658-689 (993)
421 2wwf_A Thymidilate kinase, put 93.9 0.032 1.1E-06 49.7 3.4 23 235-257 10-32 (212)
422 1nlf_A Regulatory protein REPA 93.9 0.028 9.4E-07 53.0 3.1 26 232-257 27-52 (279)
423 1nn5_A Similar to deoxythymidy 93.9 0.033 1.1E-06 49.7 3.4 24 234-257 8-31 (215)
424 1w1w_A Structural maintenance 93.9 0.036 1.2E-06 55.8 4.1 28 231-258 22-49 (430)
425 2vf7_A UVRA2, excinuclease ABC 93.9 0.016 5.4E-07 63.4 1.5 33 225-257 513-546 (842)
426 1m7g_A Adenylylsulfate kinase; 93.9 0.024 8.3E-07 51.0 2.5 26 233-258 23-48 (211)
427 1aky_A Adenylate kinase; ATP:A 93.9 0.036 1.2E-06 50.0 3.7 23 235-257 4-26 (220)
428 2bwj_A Adenylate kinase 5; pho 93.8 0.028 9.7E-07 49.4 2.7 25 234-258 11-35 (199)
429 1vht_A Dephospho-COA kinase; s 93.7 0.035 1.2E-06 50.0 3.3 21 237-257 6-26 (218)
430 3fb4_A Adenylate kinase; psych 93.7 0.036 1.2E-06 49.7 3.3 21 237-257 2-22 (216)
431 2plr_A DTMP kinase, probable t 93.7 0.036 1.2E-06 49.2 3.2 23 236-258 5-27 (213)
432 4eaq_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 51.0 3.1 26 233-258 24-49 (229)
433 1zd8_A GTP:AMP phosphotransfer 93.6 0.039 1.3E-06 50.1 3.3 23 235-257 7-29 (227)
434 1tev_A UMP-CMP kinase; ploop, 93.6 0.04 1.4E-06 48.1 3.3 21 237-257 5-25 (196)
435 3dl0_A Adenylate kinase; phosp 93.6 0.039 1.3E-06 49.6 3.3 21 237-257 2-22 (216)
436 3cr8_A Sulfate adenylyltranfer 93.6 0.023 8E-07 59.2 2.0 27 232-258 366-392 (552)
437 1e6c_A Shikimate kinase; phosp 93.6 0.044 1.5E-06 47.1 3.5 22 236-257 3-24 (173)
438 2iyv_A Shikimate kinase, SK; t 93.5 0.042 1.4E-06 47.9 3.3 22 236-257 3-24 (184)
439 2r6f_A Excinuclease ABC subuni 93.5 0.02 6.8E-07 63.2 1.4 32 225-256 640-671 (972)
440 3a4m_A L-seryl-tRNA(SEC) kinas 93.5 0.039 1.3E-06 51.5 3.2 23 235-257 4-26 (260)
441 1gtv_A TMK, thymidylate kinase 93.5 0.019 6.5E-07 51.3 1.0 22 237-258 2-23 (214)
442 2pt5_A Shikimate kinase, SK; a 93.4 0.046 1.6E-06 46.8 3.3 21 237-257 2-22 (168)
443 3qks_A DNA double-strand break 93.4 0.044 1.5E-06 49.3 3.3 20 237-256 25-44 (203)
444 2pbr_A DTMP kinase, thymidylat 93.4 0.044 1.5E-06 47.8 3.2 21 237-257 2-22 (195)
445 3qkt_A DNA double-strand break 93.3 0.058 2E-06 52.5 4.3 43 349-391 266-313 (339)
446 2zan_A Vacuolar protein sortin 93.3 0.33 1.1E-05 48.9 10.1 23 236-258 168-190 (444)
447 2z0h_A DTMP kinase, thymidylat 93.3 0.043 1.5E-06 48.1 3.1 22 237-258 2-23 (197)
448 1uf9_A TT1252 protein; P-loop, 93.3 0.043 1.5E-06 48.4 3.0 22 237-258 10-31 (203)
449 1zuh_A Shikimate kinase; alpha 93.2 0.053 1.8E-06 46.5 3.5 23 235-257 7-29 (168)
450 1zak_A Adenylate kinase; ATP:A 93.2 0.047 1.6E-06 49.3 3.2 22 236-257 6-27 (222)
451 2cdn_A Adenylate kinase; phosp 93.2 0.059 2E-06 47.8 3.8 21 237-257 22-42 (201)
452 1qf9_A UMP/CMP kinase, protein 93.2 0.044 1.5E-06 47.8 2.9 22 236-257 7-28 (194)
453 1ukz_A Uridylate kinase; trans 93.2 0.049 1.7E-06 48.3 3.2 22 236-257 16-37 (203)
454 1pzn_A RAD51, DNA repair and r 93.1 0.038 1.3E-06 54.2 2.6 29 230-258 126-154 (349)
455 1ypw_A Transitional endoplasmi 93.1 0.18 6.1E-06 55.0 8.2 27 232-258 235-261 (806)
456 2vli_A Antibiotic resistance p 93.0 0.041 1.4E-06 47.8 2.4 22 236-257 6-27 (183)
457 2ze6_A Isopentenyl transferase 93.0 0.047 1.6E-06 50.9 2.9 22 237-258 3-24 (253)
458 2o8b_B DNA mismatch repair pro 93.0 0.064 2.2E-06 60.0 4.4 32 226-258 773-811 (1022)
459 1lv7_A FTSH; alpha/beta domain 92.9 0.061 2.1E-06 49.7 3.6 23 236-258 46-68 (257)
460 1q3t_A Cytidylate kinase; nucl 92.9 0.061 2.1E-06 49.2 3.6 24 234-257 15-38 (236)
461 3cf2_A TER ATPase, transitiona 92.8 0.18 6.1E-06 54.8 7.6 26 233-258 236-261 (806)
462 3umf_A Adenylate kinase; rossm 92.8 0.061 2.1E-06 49.1 3.4 27 232-258 26-52 (217)
463 1e4v_A Adenylate kinase; trans 92.7 0.058 2E-06 48.5 3.0 21 237-257 2-22 (214)
464 2p5t_B PEZT; postsegregational 92.7 0.041 1.4E-06 51.1 2.0 23 236-258 33-55 (253)
465 2ius_A DNA translocase FTSK; n 92.6 0.079 2.7E-06 54.6 4.3 31 227-257 159-189 (512)
466 3pih_A Uvrabc system protein A 92.6 0.097 3.3E-06 57.7 5.1 27 226-252 601-627 (916)
467 3be4_A Adenylate kinase; malar 92.6 0.07 2.4E-06 48.1 3.4 22 236-257 6-27 (217)
468 2xb4_A Adenylate kinase; ATP-b 92.5 0.071 2.4E-06 48.4 3.3 21 237-257 2-22 (223)
469 2dr3_A UPF0273 protein PH0284; 92.4 0.074 2.5E-06 48.3 3.4 26 232-257 20-45 (247)
470 3r20_A Cytidylate kinase; stru 92.4 0.081 2.8E-06 48.9 3.6 22 236-257 10-31 (233)
471 1gvn_B Zeta; postsegregational 92.3 0.064 2.2E-06 51.0 2.9 21 237-257 35-55 (287)
472 3tlx_A Adenylate kinase 2; str 92.3 0.075 2.6E-06 49.0 3.3 22 236-257 30-51 (243)
473 3m6a_A ATP-dependent protease 92.2 0.079 2.7E-06 55.1 3.6 25 234-258 107-131 (543)
474 1ak2_A Adenylate kinase isoenz 92.2 0.094 3.2E-06 47.8 3.8 22 236-257 17-38 (233)
475 1jbk_A CLPB protein; beta barr 92.2 0.093 3.2E-06 45.0 3.6 23 236-258 44-66 (195)
476 2grj_A Dephospho-COA kinase; T 92.1 0.084 2.9E-06 47.1 3.3 22 237-258 14-35 (192)
477 1tf7_A KAIC; homohexamer, hexa 92.0 0.074 2.5E-06 55.0 3.2 28 231-258 277-304 (525)
478 3ake_A Cytidylate kinase; CMP 91.8 0.09 3.1E-06 46.5 3.1 21 237-257 4-24 (208)
479 3sr0_A Adenylate kinase; phosp 91.8 0.096 3.3E-06 47.3 3.3 22 237-258 2-23 (206)
480 1sxj_E Activator 1 40 kDa subu 91.5 0.086 2.9E-06 50.9 2.9 22 236-257 37-58 (354)
481 3bos_A Putative DNA replicatio 91.4 0.12 4E-06 46.5 3.5 23 236-258 53-75 (242)
482 1uj2_A Uridine-cytidine kinase 91.4 0.11 3.7E-06 48.1 3.3 21 237-257 24-44 (252)
483 2ga8_A Hypothetical 39.9 kDa p 91.3 0.076 2.6E-06 52.2 2.1 21 237-257 26-46 (359)
484 3cf0_A Transitional endoplasmi 91.2 0.11 3.7E-06 49.5 3.1 25 234-258 48-72 (301)
485 3auy_A DNA double-strand break 91.2 0.14 4.7E-06 50.4 4.0 20 237-256 27-46 (371)
486 2w58_A DNAI, primosome compone 91.1 0.12 4.1E-06 45.6 3.2 23 236-258 55-77 (202)
487 3lda_A DNA repair protein RAD5 91.1 0.11 3.8E-06 51.9 3.3 25 232-256 175-199 (400)
488 2f6r_A COA synthase, bifunctio 91.0 0.11 3.8E-06 49.1 3.0 21 237-257 77-97 (281)
489 1ltq_A Polynucleotide kinase; 90.8 0.13 4.5E-06 48.5 3.3 21 237-257 4-24 (301)
490 2p65_A Hypothetical protein PF 90.7 0.12 4E-06 44.3 2.7 23 236-258 44-66 (187)
491 4ad8_A DNA repair protein RECN 90.7 0.064 2.2E-06 55.3 1.1 29 228-257 54-82 (517)
492 1sxj_C Activator 1 40 kDa subu 90.5 0.14 4.9E-06 49.4 3.3 23 236-258 47-69 (340)
493 3k1j_A LON protease, ATP-depen 90.1 0.098 3.3E-06 55.1 1.9 32 228-259 53-84 (604)
494 3gmt_A Adenylate kinase; ssgci 90.1 0.17 5.9E-06 46.6 3.3 21 237-257 10-30 (230)
495 3h4m_A Proteasome-activating n 90.1 0.18 6.1E-06 47.1 3.5 23 236-258 52-74 (285)
496 3b9p_A CG5977-PA, isoform A; A 90.1 0.18 6E-06 47.5 3.5 23 236-258 55-77 (297)
497 1fnn_A CDC6P, cell division co 90.0 0.17 5.8E-06 49.2 3.4 22 237-258 46-67 (389)
498 2qz4_A Paraplegin; AAA+, SPG7, 90.0 0.2 6.7E-06 46.0 3.7 24 235-258 39-62 (262)
499 3ice_A Transcription terminati 90.0 0.12 4.2E-06 51.4 2.3 30 228-257 167-196 (422)
500 3vfd_A Spastin; ATPase, microt 89.7 1.7 5.9E-05 42.6 10.6 23 236-258 149-171 (389)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=4.3e-64 Score=499.94 Aligned_cols=303 Identities=42% Similarity=0.688 Sum_probs=271.4
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc--ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCcc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL--QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMV 80 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~--~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~ 80 (423)
|.|.|||||||||+||||||+|++++++|.++ ++||+|+||+||++++|+|++|+|++|+||+||+|++.
T Consensus 27 ~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~-------- 98 (342)
T 1lnz_A 27 YVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGMSKNQHGRNADDMVIKVPPGTVVTDD-------- 98 (342)
T ss_dssp SSCCCCBCCCCCCCCCCEEEEECTTCCCSCGGGTCCEEECCCCCCCCSTTCCCCCCCCEEEEECTTEEEEET--------
T ss_pred cccCCCCCCCCCCCCCeEEEEeCCCcChHHHhCccceEEcCCCCCCCCCCCcCCCCCCEEEEcCCccEEEeC--------
Confidence 78999999999999999999999999888887 68999999999999999999999999999999999972
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhh
Q 014494 81 DNRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNI 160 (423)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~ 160 (423)
+++ .++
T Consensus 99 --------------------------~~~------------------------------------------------~~~ 104 (342)
T 1lnz_A 99 --------------------------DTK------------------------------------------------QVI 104 (342)
T ss_dssp --------------------------TTC------------------------------------------------CEE
T ss_pred --------------------------CCC------------------------------------------------cEe
Confidence 111 177
Q ss_pred cccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEE
Q 014494 161 AELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGL 240 (423)
Q Consensus 161 ~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~L 240 (423)
+||+.+++.+++|+||+||+||.+|.+++++ .+.+ ...|++|+++++.++++.+++|+|
T Consensus 105 ~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~-----~p~~----------------~~~g~~g~~~~~~leLk~la~V~l 163 (342)
T 1lnz_A 105 ADLTEHGQRAVIARGGRGGRGNSRFATPANP-----APQL----------------SENGEPGKERYIVLELKVLADVGL 163 (342)
T ss_dssp EEECSTTCEEEEECCCCCCCCGGGSCBTTBS-----SCCC----------------CCCCCCCCEEEEEEEEECCCCEEE
T ss_pred hhhhcCCcEEEEeCCCCCccCcccccccccc-----cccc----------------ccCCCCcchhhHhhhhhhcCeeee
Confidence 9999999999999999999999999998763 2211 146899999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEE
Q 014494 241 VGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYV 319 (423)
Q Consensus 241 VG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~V 319 (423)
||++||||||||++|++.++.+++|+|+|+.|+.+.+.+++ ..+.+|||||++++++...++.+.|++++++|+++++|
T Consensus 164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~V 243 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEE
T ss_pred eCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEE
Confidence 99999999999999999999999999999999999999987 89999999999998888889999999999999999999
Q ss_pred EecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCC-CcEEEEecccCcCHHH
Q 014494 320 VDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQG-VPIYPVCAVLEEGVPE 398 (423)
Q Consensus 320 vD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~-~~ii~vSA~~g~gi~e 398 (423)
+|+++.. ...++..+..+..+|..|.+.+..+|.|+|+||+|+....+..+.+++.+.. .++++|||++++|+++
T Consensus 244 vD~s~~~----~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 244 IDMSGLE----GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRE 319 (342)
T ss_dssp EESSCSS----CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHH
T ss_pred EECCccc----ccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHH
Confidence 9998621 1368888899999999887777899999999999999876667777777643 6899999999999999
Q ss_pred HHHHHHHHhccccC
Q 014494 399 LKVGLRMLVNGEKS 412 (423)
Q Consensus 399 L~~~i~~~l~~~~~ 412 (423)
|+++|.+.+.+.+.
T Consensus 320 L~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 320 LLFEVANQLENTPE 333 (342)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhhCcc
Confidence 99999999987665
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=2.2e-60 Score=483.90 Aligned_cols=298 Identities=44% Similarity=0.669 Sum_probs=267.2
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCccccccc-ccEEEcCCCCCCCCCCCCCCCCCCEEEEcCCccEEEeccCCCCCccc
Q 014494 3 FKVVLTNVGGNGGRGGDVILECSPSVWDFRSL-QHHLRAGKGGHGAPKNMIGTCGEDKVVLVPVGTVIHLIEGEIPSMVD 81 (423)
Q Consensus 3 ~~~~~~p~GG~GG~GG~v~~~~~~~~~~l~~~-~~~~~a~~G~~G~~~~~~G~~g~d~~i~vP~gt~v~~~~~~~~~~~~ 81 (423)
|.|.|||||||||+||||||+|++++++|.++ ++||+|+||+||++++|+|++|+|++|+||+||+|++.
T Consensus 27 ~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~a~~g~~g~~~~~~g~~g~d~~~~vp~gt~v~~~--------- 97 (416)
T 1udx_A 27 FVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLSKRTYKAEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDA--------- 97 (416)
T ss_dssp TBSCCCBCCCCCCCCCCEEEEECTTCCSSTTSCSSCEECCCCCCCBTTTBCCCCCCCEEEEECSSEEEEET---------
T ss_pred cccCCCCCCCCCCCCCeEEEEeCCCcCchhhhhhceEEcCCCCCCCCCCCcCCCCCCEEEecCCccEEEec---------
Confidence 78999999999999999999999999999887 89999999999999999999999999999999999972
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCchhhhcccCCCCCCccccccccchhhhhhhhhhhHhhhhhhhhhhc
Q 014494 82 NRSESDLDPWERPGSLVDDPSLSNQQTTIQNPSVPEEVKSTCKNDSSSSHTEITSKASTNLQHATQAEQEGEKQIQYNIA 161 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~if~~~a~t~e~~ela~l~~~~~ 161 (423)
+++ .+++
T Consensus 98 -------------------------~~~------------------------------------------------~~~~ 104 (416)
T 1udx_A 98 -------------------------DTG------------------------------------------------ELLA 104 (416)
T ss_dssp -------------------------TTC------------------------------------------------CEEE
T ss_pred -------------------------CCC------------------------------------------------cEEe
Confidence 111 1779
Q ss_pred ccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCcccccccccccCCCCCceeeeeeeccCCCeEEEE
Q 014494 162 ELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQSSLVAGEPGSESELILELKSIADVGLV 241 (423)
Q Consensus 162 ~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~g~~~~l~lelk~~~~V~LV 241 (423)
||+.+++.+++|+||+||+||.+|++++++ .+.+ .+.|++|++++++|+++.+++|+||
T Consensus 105 dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~-----~p~~----------------~~~g~~g~~~~i~lelk~g~~VgLV 163 (416)
T 1udx_A 105 DLTEEGQTVLVARGGAGGRGNMHFVSPTRQ-----APRF----------------AEAGEEGEKRRLRLELMLIADVGLV 163 (416)
T ss_dssp EECSTTCEEEEECCCCCCCCGGGGCCSSCS-----SCCE----------------EECCCCCCEEEEEEEECCSCSEEEE
T ss_pred eccCCCceEEEecCCCCCcccceeeccccc-----Cccc----------------ccCCCCceEeeeeeEEcCCCEEEEE
Confidence 999999999999999999999999998873 2211 1479999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEE
Q 014494 242 GMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVV 320 (423)
Q Consensus 242 G~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~Vv 320 (423)
|+|||||||||++|++..+.+++|+|+|+.|+.+.+.+++ ..+.++||||+++.++...++...|++++++++.+++|+
T Consensus 164 G~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vv 243 (416)
T 1udx_A 164 GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVL 243 (416)
T ss_dssp CCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEE
T ss_pred CCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEe
Confidence 9999999999999999999999999999999999999987 889999999999988888889999999999999999999
Q ss_pred ecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc--CCCcEEEEecccCcCHHH
Q 014494 321 DLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 321 D~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~e 398 (423)
|++. .+..++..+..++..+++++..+|.|+|+||+|+... +.++.+.+.+ .+.++++|||++++|+++
T Consensus 244 Dls~--------~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 244 DAAD--------EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp ETTS--------CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred CCcc--------CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 9972 5788888999999988888889999999999999877 5555555544 356899999999999999
Q ss_pred HHHHHHHHhccccC
Q 014494 399 LKVGLRMLVNGEKS 412 (423)
Q Consensus 399 L~~~i~~~l~~~~~ 412 (423)
|+++|.+.+.+.+.
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999976554
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.96 E-value=3.3e-30 Score=258.30 Aligned_cols=252 Identities=21% Similarity=0.261 Sum_probs=153.6
Q ss_pred chhhhhhhhhhhHh---hhhhhhhhhcccccCCcEEEEccCCCCccCCccccCCCCCccccccccccCCCCCCccccccc
Q 014494 138 ASTNLQHATQAEQE---GEKQIQYNIAELTKQGQRVIIAYGGEGGLGNVCCPSVSKKPMVMKSKSYKNGPSDPKLASDDQ 214 (423)
Q Consensus 138 l~if~~~a~t~e~~---ela~l~~~~~~l~~~~~~~~~~~GG~GG~Gn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 214 (423)
|+||++||.|++|+ +|||++|.+++| ..|..+....||.|.+|++....+. .++.++.++..++++++..
T Consensus 91 l~i~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~------~~~~~~~~i~~l~~~l~~~ 163 (364)
T 2qtf_A 91 LEIFALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVES------TIKFYKRRINKLMKELESI 163 (364)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------C------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 89999999999976 999999999999 8888888888998877766543332 2333445555666666665
Q ss_pred ccccCCCCCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 215 SSLVAGEPGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 215 ~~~~~g~~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
...+...++.+ .....+.|+|+|+||||||||+|+|++....+.+++|+|+++..+.+.+++..+.++||||++.
T Consensus 164 ~~~r~~~r~~r-----~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 164 KIFKEKSIESN-----KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp HC------------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred HHHHHHHHHhh-----hhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 55443333332 1124556999999999999999999999887889999999999999999999999999999976
Q ss_pred CccccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCC--cHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 295 GAHENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIK--PWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 295 ~a~~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~--~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
.... .+...| +..+..+|++++|+|+++. . ...+...+...+..+ .+.+.|.|+|+||+|+.+.
T Consensus 239 ~lp~--~lve~f~~tl~~~~~aD~il~VvD~s~~-------~~~~~~~~~~~~~~L~~l--~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 239 GIPP--QIVDAFFVTLSEAKYSDALILVIDSTFS-------ENLLIETLQSSFEILREI--GVSGKPILVTLNKIDKING 307 (364)
T ss_dssp SCCG--GGHHHHHHHHHGGGGSSEEEEEEETTSC-------HHHHHHHHHHHHHHHHHH--TCCSCCEEEEEECGGGCCS
T ss_pred cCCH--HHHHHHHHHHHHHHhCCEEEEEEECCCC-------cchHHHHHHHHHHHHHHh--CcCCCCEEEEEECCCCCCc
Confidence 4221 233333 4567788999999999862 2 233333333334332 2357899999999999763
Q ss_pred H--HHHHH---H-HHH-cCCCcEEEEecccCcCHHHHHHHHHHHhccccC
Q 014494 370 E--EVYEE---L-ERR-VQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 370 ~--~~~~~---l-~~~-~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
. ..... + ... .+..+++++||+++.|+++|++.|.+.+.....
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 2 21222 2 222 223468999999999999999999998865543
No 4
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.6e-26 Score=227.07 Aligned_cols=155 Identities=27% Similarity=0.434 Sum_probs=122.0
Q ss_pred cCCCCCCcccccccccccCCC-CCceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe
Q 014494 201 KNGPSDPKLASDDQSSLVAGE-PGSESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF 279 (423)
Q Consensus 201 ~~~~~~l~~~~~~~~~~~~g~-~g~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~ 279 (423)
+.+++++++++.+.++.+.+. .|. .+..+....++|||||+||||||||+|+|++.++.+++|||||++|..|.+.+
T Consensus 39 k~kla~lr~el~~~~~~~~~~~~~~--~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~ 116 (376)
T 4a9a_A 39 KAKLAKLRRELLTSASSGSGGGAGI--GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY 116 (376)
T ss_dssp HHHHHHHHHHHHCC-------CCSB--TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE
T ss_pred HHHHHHHHHHHhhhhccCCCCCCCC--CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe
Confidence 344556667766555443322 222 23345567789999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 280 DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 280 ~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
++.++.++||||++++++.+.+++.+|+.+++.||++++|+|+++ |....+.+..+|..+...+..+|.++
T Consensus 117 ~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~---------p~~~~~~i~~EL~~~~~~l~~k~~~i 187 (376)
T 4a9a_A 117 KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK---------PLHHKQIIEKELEGVGIRLNKTPPDI 187 (376)
T ss_dssp TTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS---------HHHHHHHHHHHHHHTTEEETCCCCCE
T ss_pred CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc---------cHHHHHHHHHHHHHhhHhhccCChhh
Confidence 999999999999999999999999999999999999999999974 56777778888888777777888888
Q ss_pred EEeCCCc
Q 014494 360 VANKIDE 366 (423)
Q Consensus 360 VlNKiDl 366 (423)
++||+|.
T Consensus 188 ~~nK~d~ 194 (376)
T 4a9a_A 188 LIKKKEK 194 (376)
T ss_dssp EEEECSS
T ss_pred hhhHhhh
Confidence 8888885
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=9.6e-21 Score=185.47 Aligned_cols=163 Identities=24% Similarity=0.308 Sum_probs=128.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeC-CeeEEEEcCCCCcCCc---cccccchHHHHHHHh
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFD-DIQITVADIPGLIKGA---HENRGLGHAFLRHIE 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~-~~~i~l~DtpG~i~~a---~~~~~l~~~fl~~i~ 311 (423)
.|+++|.||||||||+|+|++.+.. +++++.+|.....+.+..+ +.++.++||||+.+.. ..+..+...+..++.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~ 91 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE 91 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhh
Confidence 7999999999999999999998765 5788999999999999998 8999999999997643 111223344567788
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC-ChH---HHHHHHHHHc-CCCcEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAE---EVYEELERRV-QGVPIY 386 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~-~~~---~~~~~l~~~~-~~~~ii 386 (423)
.+|++++|+|+++. ........++..+.. .+.|.|+|+||+|+. ... +..+.+.+.+ ...+++
T Consensus 92 ~aD~il~VvD~~~~-------~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 92 EADVILFMIDATEG-------WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HCSEEEEEEETTTB-------SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred cCCEEEEEEeCCCC-------CCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 99999999999873 334444443444433 378999999999997 432 4456666666 457899
Q ss_pred EEecccCcCHHHHHHHHHHHhcccc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
++||+++.|+++|++.|.+.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCC
Confidence 9999999999999999999997643
No 6
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.85 E-value=1.5e-20 Score=166.19 Aligned_cols=155 Identities=23% Similarity=0.417 Sum_probs=111.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~i~~ad 314 (423)
+|+|+|++|||||||+++|++....+..++++|.+...+.+.+++..+.+|||||+.+..... ..+...++. ...++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPD 83 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cCCCC
Confidence 799999999999999999999877778889889998899999888999999999987642211 112222221 13789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++ ......++.++.. .+.|.|+|+||+|+..... ..+.+.+.+ +.+++++||+
T Consensus 84 ~~i~v~D~~~----------~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~SA~ 147 (165)
T 2wji_A 84 LVVNIVDATA----------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLSAA 147 (165)
T ss_dssp EEEEEEETTC----------HHHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBGG
T ss_pred EEEEEecCCc----------hhHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEEcC
Confidence 9999999875 2233344444433 2689999999999853211 134454444 4689999999
Q ss_pred cCcCHHHHHHHHHHHhc
Q 014494 392 LEEGVPELKVGLRMLVN 408 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~ 408 (423)
+++|+++++++|.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987763
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=7.8e-21 Score=165.74 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=109.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
++|+++|.+|+|||||+++|.+.... ...++.+|.+.....+.+++..+.+|||||+.........+...+..++..+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 47999999999999999999987653 57788888888888888888999999999987643222223444566788999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEE 394 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~ 394 (423)
++++|+|+++.. .. ....+...+.. .+.|.++|+||+|+....+....+. .+...+++++||+++.
T Consensus 82 ~~i~v~d~~~~~-------~~-~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 82 VVLFAVDGRAEL-------TQ-ADYEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHAR 147 (161)
T ss_dssp EEEEEEESSSCC-------CH-HHHHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTB
T ss_pred EEEEEEECCCcc-------cH-hHHHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccCC
Confidence 999999998731 11 11222222322 2789999999999986543333333 2222378999999999
Q ss_pred CHHHHHHHHHHHh
Q 014494 395 GVPELKVGLRMLV 407 (423)
Q Consensus 395 gi~eL~~~i~~~l 407 (423)
|+++++++|.+.+
T Consensus 148 gv~~l~~~l~~~l 160 (161)
T 2dyk_A 148 GLEELLEAIWERL 160 (161)
T ss_dssp SHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 9999999998765
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=1.2e-20 Score=184.25 Aligned_cols=163 Identities=26% Similarity=0.265 Sum_probs=123.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~ad 314 (423)
.|+|||.||||||||+|+|++.+.. +++.+.||.+...+.+..++.++.++||||+.+..+. +..+...+..++..+|
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad 88 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 88 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999998765 5678889988888888888899999999999763321 1113344566788999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-HHHHHHHHcCCCcEEEEecccC
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-~~~~l~~~~~~~~ii~vSA~~g 393 (423)
++++|+|+++.. . .. ...++..+..+ ..+.|.|+|+||+|+..... ..+.+.+..+..++++|||+++
T Consensus 89 ~il~VvD~~~~~------~-~~-~~~i~~~l~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 89 AVVWVVDLRHPP------T-PE-DELVARALKPL---VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp EEEEEEETTSCC------C-HH-HHHHHHHHGGG---TTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCH
T ss_pred EEEEEEECCCCC------C-hH-HHHHHHHHHhh---cCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCC
Confidence 999999998731 1 11 23333444332 13689999999999987655 5555555444457999999999
Q ss_pred cCHHHHHHHHHHHhccc
Q 014494 394 EGVPELKVGLRMLVNGE 410 (423)
Q Consensus 394 ~gi~eL~~~i~~~l~~~ 410 (423)
.|+++|++.|.+.+.+.
T Consensus 158 ~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 158 RQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhcccC
Confidence 99999999999887643
No 9
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=2.7e-21 Score=184.60 Aligned_cols=155 Identities=23% Similarity=0.345 Sum_probs=119.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc--cchHHH-HHHH--
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR--GLGHAF-LRHI-- 310 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~--~l~~~f-l~~i-- 310 (423)
++|+|+|.+|||||||+|+|++....++++|++|.+...+.+.+++..+.++||||+.+...... .....+ ..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999999888899999999999999999999999999999977442100 111111 1233
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYP 387 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~ 387 (423)
..+|++++|+|+++ .+....+..++.. ...|+|+|+||+|+.... ...+.+.+.+ +.++++
T Consensus 82 ~~~d~vi~VvDas~----------~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~ 145 (256)
T 3iby_A 82 LEYDCIINVIDACH----------LERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSVIP 145 (256)
T ss_dssp SCCSEEEEEEEGGG----------HHHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCEEE
T ss_pred CCCCEEEEEeeCCC----------chhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCEEE
Confidence 78999999999986 2333334444432 278999999999986432 1244566655 579999
Q ss_pred EecccCcCHHHHHHHHHHH
Q 014494 388 VCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~ 406 (423)
+||+++.|+++|++.|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=168.31 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=123.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||||... +......++..+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GCTTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh-------hhhhHHHHHhhC
Confidence 4799999999999999999998776666677777777778888887 5789999999754 222345677889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. ..+..+..++..+..+.. .+.|.++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 90 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 159 (196)
T 3tkl_A 90 HGIIVVYDVTDQ-------ESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLETS 159 (196)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCEEEEC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHc-CCcEEEEe
Confidence 999999999872 455666667666655432 368999999999997542 3344455544 57899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+++.|+++++++|.+.+.+..
T Consensus 160 a~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998876543
No 11
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=2.5e-20 Score=165.45 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=116.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||||..... ..+..++..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 80 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-------KMLDKYIYGA 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-------TTHHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-------chhhHHHhhC
Confidence 799999999999999999998654322233333556667777776 789999999986522 2244567899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++. .++..+..++.++..+.......| .++|+||+|+... .+....+.+.+ +.+++++
T Consensus 81 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (178)
T 2hxs_A 81 QGVLLVYDITNY-------QSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN-GFSSHFV 152 (178)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEE
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc-CCcEEEE
Confidence 999999999872 455566667666665543333566 7889999999642 22333444433 5689999
Q ss_pred ecccCcCHHHHHHHHHHHhcccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
||+++.|+++++++|.+.+.+.+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998876543
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.84 E-value=1.1e-19 Score=159.12 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=112.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.+|||||..+. ......++..+|
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d 76 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF-------TAMRDLYMKNGQ 76 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS-------TTHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHhccCC
Confidence 799999999999999999998643 33344444333344455554 57899999998652 223445677899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++.....++..+..+. ...+.|.++|+||+|+... .+....+.+.+...+++++||
T Consensus 77 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 77 GFALVYSITAQ-------STFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHH-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhh-CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 99999999872 44555555665554432 2347899999999999653 233444555555678999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=167.09 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=118.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||...... .+..++..+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-------ITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-------hHHHHhccC
Confidence 3899999999999999999998876666677777777778888887 6789999999755322 123456889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++... ....|.|+|+||+|+.... +....+.... +.+++++|
T Consensus 83 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 151 (181)
T 3tw8_B 83 HGVIVVYDVTSA-------ESFVNVKRWLHEINQN---CDDVCRILVGNKNDDPERKVVETEDAYKFAGQM-GIQLFETS 151 (181)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHHHHHHHHH---CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCCEEECB
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEECCCCchhcccCHHHHHHHHHHc-CCeEEEEE
Confidence 999999999872 4555666666665443 3478999999999986432 2233333333 56899999
Q ss_pred cccCcCHHHHHHHHHHHhccccC
Q 014494 390 AVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
|+++.|+++++++|.+.+.+...
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 152 AKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999988765543
No 14
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=2.9e-20 Score=171.76 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=115.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCC--CCCCCcccceecceEEEEE-eCCeeEEEEcCCCCcCCcccc------ccchHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMN-FDDIQITVADIPGLIKGAHEN------RGLGHA 305 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~--~~i~~~~ftTl~~~~g~v~-~~~~~i~l~DtpG~i~~a~~~------~~l~~~ 305 (423)
..+|+|+|.+|||||||+|+|++.. ..+..++++|.......+. ..+..+.+|||||+....... ..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4589999999999999999999986 3567888888877665554 445899999999986532111 112233
Q ss_pred HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH---HH----HHHH
Q 014494 306 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YE----ELER 378 (423)
Q Consensus 306 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~---~~----~l~~ 378 (423)
++.....+|++++|+|+++.. . .....++..+.. ...|.|+|+||+|+....+. .+ .+..
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~-------~-~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPL-------T-ELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDA 175 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCC-------C-HHHHHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcCcCEEEEEEeCCCCC-------C-HHHHHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHh
Confidence 444444588999999998631 1 222334444432 37899999999999876442 22 2222
Q ss_pred H-----cCCCcEEEEecccCcCHHHHHHHHHHHhccccC
Q 014494 379 R-----VQGVPIYPVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 379 ~-----~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
. ....+++++||+++.|+++|+++|.+.+.....
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 2 145689999999999999999999999876543
No 15
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=1.4e-20 Score=194.80 Aligned_cols=160 Identities=22% Similarity=0.274 Sum_probs=124.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCc-CCccccccchH-HHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLI-KGAHENRGLGH-AFLRH 309 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i-~~a~~~~~l~~-~fl~~ 309 (423)
+...+|+|+|+||||||||+|+|++.+ ..+.++++||.++....+.+++..+.+|||||+. +..+....++. ..+.+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 345689999999999999999999985 5689999999999999999999999999999998 65544334443 34688
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcC-CCcEEEE
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQ-GVPIYPV 388 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~-~~~ii~v 388 (423)
++.+|++|+|+|+++. ...... .++..+ .++|.|+|+||+|+..... .+.+.+... ..++++|
T Consensus 321 ~~~aD~vl~VvD~s~~-------~s~~~~-~il~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~i 384 (482)
T 1xzp_A 321 IEKADIVLFVLDASSP-------LDEEDR-KILERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKI 384 (482)
T ss_dssp HHHCSEEEEEEETTSC-------CCHHHH-HHHHHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEE
T ss_pred hhcccEEEEEecCCCC-------CCHHHH-HHHHHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEE
Confidence 9999999999999873 233332 222222 3789999999999975311 223333332 3589999
Q ss_pred ecccCcCHHHHHHHHHHHhc
Q 014494 389 CAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~ 408 (423)
||++++|+++|+++|.+.+.
T Consensus 385 SAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998754
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=1.2e-20 Score=181.67 Aligned_cols=158 Identities=25% Similarity=0.422 Sum_probs=121.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHH---Hh
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRH---IE 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~---i~ 311 (423)
+|+|+|.+|||||||+|+|++....+++++++|.++..+.+.+.+..+.++||||+.+..... ..+...+.+. ..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 84 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSG 84 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhc
Confidence 799999999999999999999987889999999999999999988999999999998744211 1222233222 36
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEE
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~v 388 (423)
.+|++++|+|+++ .+....+..++... +.|+|+|+||+|+.... ...+.+.+.+ +.+++++
T Consensus 85 ~~d~ii~VvD~~~----------~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i~~ 148 (274)
T 3i8s_A 85 DADLLINVVDASN----------LERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVIPL 148 (274)
T ss_dssp CCSEEEEEEEGGG----------HHHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEEEC
T ss_pred CCCEEEEEecCCC----------hHHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEEEE
Confidence 8999999999986 23333444444332 78999999999986432 1234555555 5789999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||++|.|+++|++.|.+.+...
T Consensus 149 SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 149 VSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CCGGGHHHHHHHHHHHTCCCCC
T ss_pred EcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999887654
No 17
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=1.2e-19 Score=160.89 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=115.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +......++..+|
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~~ 81 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-------FRSLRTPFYRGSD 81 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-------GHHHHGGGGTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-------hhhhHHHHHhcCC
Confidence 799999999999999999998765544445445555566677776 5899999999754 3334445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc--cCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEe
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG--LSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~--l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vS 389 (423)
++++|+|+++. .++.....++.++..+... ....|.++|+||+|+... .+....+.+.....+++++|
T Consensus 82 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 82 CCLLTFSVDDS-------QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence 99999999872 4455556666666544321 246899999999998632 22333444434567899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 155 a~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887754
No 18
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=165.71 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..+|
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~d 100 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-------FNSITSAYYRSAK 100 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-------HHHHHHHHhcCCC
Confidence 799999999999999999998765444455555566667777776 5789999999754 4444567788999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++..+..++..+..+. ..+.|+++|+||+|+... .+..+.+.+.+.+.+++++||
T Consensus 101 ~iilV~D~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 101 GIILVYDITKK-------ETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence 99999999872 45555566666665442 237899999999999643 233444555445678999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 172 ~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987764
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.83 E-value=2.2e-19 Score=159.76 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=113.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..+|
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d 86 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER-------YHSLAPMYYRGAA 86 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG-------GGGGTHHHHTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh-------hhhhhHHHhccCC
Confidence 799999999999999999998765444334334444455566665 5899999999765 2223445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....++.++.... ....|.++|+||+|+... .+....+.+.. +.+++++||
T Consensus 87 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 156 (181)
T 2efe_B 87 AAIIVFDVTNQ-------ASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN-GLFFMETSA 156 (181)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEEEECCS
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccCCHHHHHHHHHHc-CCEEEEEEC
Confidence 99999999862 44566666766665542 237899999999999643 22233343333 578999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++.|+++++++|.+.+.+.+
T Consensus 157 ~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998886554
No 20
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=2.8e-20 Score=163.46 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=112.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+... .+..++..+|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d 77 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-------ITTAYYRGAM 77 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-------CCHHHHTTEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-------hHHHHhccCC
Confidence 799999999999999999998765555555555556666677765 5789999999765222 2345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++. .++.....++..+..+.. ...|.++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 78 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 147 (170)
T 1g16_A 78 GIILVYDITDE-------RTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIESSAK 147 (170)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHH-TCCEEECBTT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHc-CCeEEEEECC
Confidence 99999999862 345555666666654421 36899999999998532 23334444444 5689999999
Q ss_pred cCcCHHHHHHHHHHHhccc
Q 014494 392 LEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~ 410 (423)
++.|+++++++|.+.+.+.
T Consensus 148 ~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 21
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.2e-19 Score=157.79 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=110.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++...... +..+.-......+..++ ..+.+|||||+.+ +......++..+|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~~ 76 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQ-------FPAMQRLSISKGH 76 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSS-------CHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHhcccCC
Confidence 799999999999999999998654322 22222222223344444 5789999999865 3344556678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....++..+..+.....+.|.++|+||+|+.... .....+...+ +.+++++||
T Consensus 77 ~~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 148 (172)
T 2erx_A 77 AFILVYSITSR-------QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW-KCAFMETSA 148 (172)
T ss_dssp EEEEEEETTCH-------HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECBT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh-CCeEEEecC
Confidence 99999999862 44555566666665554334578999999999986432 2233333333 568999999
Q ss_pred ccCcCHHHHHHHHHHHhccc
Q 014494 391 VLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++.|+++++++|.+.+...
T Consensus 149 ~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTBSHHHHHHHHHHTCCSS
T ss_pred CCCcCHHHHHHHHHHHHhhh
Confidence 99999999999999887643
No 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.83 E-value=8.4e-21 Score=169.43 Aligned_cols=161 Identities=24% Similarity=0.300 Sum_probs=115.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch-HHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~-~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++... .+.+++++|.+...+.+.+++..+.+|||||+.+.......+. ...+.++..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~a 84 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 84 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhC
Confidence 3799999999999999999998764 4678899999988899999998899999999975322111111 1234568899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
|++++|+|+++.. +... ..++.++.... ..+.|.|+|+||+|+...... +.+ ....+++++||+++
T Consensus 85 d~~i~v~D~~~~~-------s~~~-~~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~---~~~-~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 85 DRVLFMVDGTTTD-------AVDP-AEIWPEFIARL--PAKLPITVVRNKADITGETLG---MSE-VNGHALIRLSARTG 150 (172)
T ss_dssp SEEEEEEETTTCC-------CCSH-HHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCE---EEE-ETTEEEEECCTTTC
T ss_pred CEEEEEEECCCCC-------CHHH-HHHHHHHHHhc--ccCCCEEEEEECccCCcchhh---hhh-ccCCceEEEeCCCC
Confidence 9999999998742 1111 23444443322 236899999999998542100 000 12457899999999
Q ss_pred cCHHHHHHHHHHHhccc
Q 014494 394 EGVPELKVGLRMLVNGE 410 (423)
Q Consensus 394 ~gi~eL~~~i~~~l~~~ 410 (423)
.|+++++++|.+.+...
T Consensus 151 ~gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGFD 167 (172)
T ss_dssp TTHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHhhhc
Confidence 99999999999887543
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=7.6e-20 Score=165.05 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=109.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC----------------------------------
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---------------------------------- 281 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---------------------------------- 281 (423)
.+|+++|.+|||||||+++|++........+.++.+.....+.+++
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYN 87 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999998754433223223334444455544
Q ss_pred -----eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC
Q 014494 282 -----IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 356 (423)
Q Consensus 282 -----~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 356 (423)
..+.+|||||.... ......++..+|++++|+|+++. .++..+..++.++..+. ..|
T Consensus 88 ~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~i~v~D~~~~-------~s~~~~~~~~~~i~~~~----~~p 149 (208)
T 3clv_A 88 ENLCNIKFDIWDTAGQERY-------ASIVPLYYRGATCAIVVFDISNS-------NTLDRAKTWVNQLKISS----NYI 149 (208)
T ss_dssp TTTCEEEEEEEECTTGGGC-------TTTHHHHHTTCSEEEEEEETTCH-------HHHHHHHHHHHHHHHHS----CCE
T ss_pred CccceeEEEEEECCCcHHH-------HHHHHHHhcCCCEEEEEEECCCH-------HHHHHHHHHHHHHHhhC----CCc
Confidence 67899999997652 22345667899999999999872 44566666666665432 489
Q ss_pred eEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 357 SLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 357 ~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+++|+||+|+... .+....+.+.. +.+++++||+++.|+++++++|.+.+.+
T Consensus 150 iilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 150 IILVANKIDKNKFQVDILEVQKYAQDN-NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEEEEECTTCC-CCSCHHHHHHHHHHT-TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcccccCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999994321 12223333333 5689999999999999999999887653
No 24
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.82 E-value=1.8e-19 Score=158.56 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=107.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+.+|.+.....+.+++ ..+.+|||||....... .....+..+|
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~d 77 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTGD 77 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccCC
Confidence 799999999999999999998765555555666677777777777 57889999998652210 1123466799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....++.++.... ...+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 78 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 148 (169)
T 3q85_A 78 AFLIVFSVTD-------RRSFSKVPETLLRLRAGR-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKHIETSA 148 (169)
T ss_dssp EEEEEEETTC-------HHHHHTHHHHHHHHHHHS-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECBT
T ss_pred EEEEEEECCC-------hHHHHHHHHHHHHHHhcc-cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc-CCcEEEecC
Confidence 9999999987 245666666666665432 1237899999999998643 23334444444 568999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+..
T Consensus 149 ~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999887754
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.82 E-value=2.3e-19 Score=160.48 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=116.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe--eEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~--~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.. ....++.|+.......+.+++. .+.+|||||..+.. .....++..+|
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~ 77 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 77 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C-------TTHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH-------HHHHHHHhcCC
Confidence 79999999999999999999864 3556666776666667777774 57789999976522 22345567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++ ..++.....+...+..+. ...+.|.++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 78 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 148 (189)
T 4dsu_A 78 GFLCVFAINN-------TKSFEDIHHYREQIKRVK-DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY-GIPFIETSAK 148 (189)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHT-TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH-TCCEEECCTT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECccCcccccCHHHHHHHHHHc-CCeEEEEeCC
Confidence 9999999987 245566666666665542 2347899999999999753 23444555544 5689999999
Q ss_pred cCcCHHHHHHHHHHHhccc
Q 014494 392 LEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~ 410 (423)
++.|+++++++|.+.+.+.
T Consensus 149 ~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999998887543
No 26
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=1.4e-19 Score=160.37 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=115.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+. ...+..++..+|
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~d 88 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDST 88 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------GGGSHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH-------HHHHHHHhcCCC
Confidence 799999999999999999998766555556666667777777777 57899999997552 223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....++.++..... .+.|.++|+||+|+.... +....+.... +.+++++||
T Consensus 89 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 158 (179)
T 2y8e_A 89 VAVVVYDITNT-------NSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSA 158 (179)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEEEBT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHc-CCeEEEEeC
Confidence 99999999862 445555666666554321 368999999999986431 2222233332 568999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 159 ~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 159 KAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TTTBSHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887754
No 27
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.82 E-value=3.6e-19 Score=155.60 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=112.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..++.......+.+++ ..+.+|||||..+ +......++..+|
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~d 77 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSGE 77 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------CHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch-------hHHHHHHHhhcCC
Confidence 799999999999999999998653 44555565555555666666 5789999999765 3334556678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....++.++..+.. ..+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 78 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 148 (168)
T 1u8z_A 78 GFLCVFSITEM-------ESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW-NVNYVETSA 148 (168)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TCEEEECCT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHc-CCeEEEeCC
Confidence 99999999872 455666666666654432 237899999999998643 12222333332 468999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 149 KTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-19 Score=158.21 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=113.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|.+........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..+|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d 77 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER-------FASLAPXYYRNAQ 77 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChh-------hhhhhhhhhccCc
Confidence 699999999999999999998765444444444445556666665 5789999999765 2233456778999
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-------HHHHHHHHHHcCCCcEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-------EEVYEELERRVQGVPIYP 387 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-------~~~~~~l~~~~~~~~ii~ 387 (423)
++++|+|+++. .++.....++.++.... ..+.|.++|+||+|+... .+....+.... +.++++
T Consensus 78 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 147 (170)
T 1ek0_A 78 AALVVYDVTKP-------QSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK-GLLFFE 147 (170)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-TCEEEE
T ss_pred EEEEEEecCCh-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-CCEEEE
Confidence 99999999872 45566666666665432 247899999999998643 12233343333 568999
Q ss_pred EecccCcCHHHHHHHHHHHhc
Q 014494 388 VCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+||+++.|+++++++|.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTTSC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999987664
No 29
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.82 E-value=3.2e-19 Score=155.77 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=112.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.... ..+..++.......+.+++ ..+.+|||||..+ +......++..++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~~~ 76 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ-------FASMRDLYIKNGQ 76 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHHhccCC
Confidence 7999999999999999999976433 3344444444455566666 4589999999765 3334456678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
.+++|+|+++. .++.....+..++..+. ...+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 77 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 147 (167)
T 1kao_A 77 GFILVYSLVNQ-------QSFQDIKPMRDQIIRVK-RYEKVPVILVGNKVDLESEREVSSSEGRALAEEW-GCPFMETSA 147 (167)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHT-TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSCEEEECT
T ss_pred EEEEEEeCCCH-------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcccccccCCHHHHHHHHHHh-CCCEEEecC
Confidence 99999999872 45555666666554432 1247899999999998643 22233344433 568999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 148 ~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999887753
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=1e-19 Score=160.11 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=110.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+... ....++..+|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d 80 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYRDSN 80 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhccCC
Confidence 799999999999999999998755444444444444455666665 5788999999765221 2223467899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++.....++.++..+.. ...|.++|+||+|+... .+....+.+.. +.+++++||
T Consensus 81 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 150 (170)
T 1z08_A 81 GAILVYDITDE-------DSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESV-GAKHYHTSA 150 (170)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEEEBT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHc-CCeEEEecC
Confidence 99999999872 455666666666654432 36899999999999653 22233444443 578999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.6e-19 Score=160.47 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=111.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCc-ccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHY-SFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~-~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+++|.+|||||||+++|++.......+ +.++.+.....+.+++ ..+.+|||||..+ +...+..++..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~ 84 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER-------FRSVTHAYYRDA 84 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGGC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHccCC
Confidence 79999999999999999999876543333 3334444445556666 4789999999765 222344567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. ..+..+..++.++..+.. ...|.++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 85 d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 154 (180)
T 2g6b_A 85 HALLLLYDVTNK-------ASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFMETS 154 (180)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEECC
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEEe
Confidence 999999999872 445556666666655432 47899999999999753 22333444433 56899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.82 E-value=1.2e-19 Score=159.01 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=112.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+... ....++..+|
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 79 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYRGAQ 79 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhcCCC
Confidence 799999999999999999998754443344444455566666665 5789999999765221 2345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++.....++.++..+. .+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 80 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 148 (168)
T 1z2a_A 80 ACVLVFSTTDR-------ESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL-KLRFYRTSV 148 (168)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEECBT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEEEec
Confidence 99999999872 34555566666665443 47899999999998652 22333444433 568999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 149 ~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp TTTBSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987764
No 33
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.82 E-value=1.8e-19 Score=157.71 Aligned_cols=155 Identities=25% Similarity=0.300 Sum_probs=111.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|+|||||+++|++.... ...| |.......+.+.+..+.+|||||+.+ +...+..++..+|++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGG-------GHHHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChh-------hHHHHHHHhccCCEE
Confidence 6899999999999999999875432 2222 44455667777789999999999865 334455678899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc---CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~---~~~~ii~vSA 390 (423)
++|+|+++. .++.....++.++... ....+.|.++|+||+|+... +++.+.+.... ...+++++||
T Consensus 72 i~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (164)
T 1r8s_A 72 IFVVDSNDR-------ERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA 143 (164)
T ss_dssp EEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence 999999872 4566655555554332 23357899999999999764 23222222111 2346899999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 144 ~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 144 TSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 34
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=3.2e-19 Score=156.64 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=111.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..........+.+.+ ..+.+|||||+.+ +......++..+|
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~~~ 80 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER-------FRALAPMYYRGSA 80 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGTHHHHTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh-------hhcccHhhCcCCC
Confidence 799999999999999999998754322222222223334455554 6789999999854 2223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++.....++..+..+. ....|+++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 81 ~~i~v~d~~~~-------~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 150 (170)
T 1z0j_A 81 AAIIVYDITKE-------ETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDVREVMERDAKDYADSI-HAIFVETSA 150 (170)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECBT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccccccCHHHHHHHHHHc-CCEEEEEeC
Confidence 99999999872 45566666767665542 246889999999999653 23334444443 578999999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999988764
No 35
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=1.3e-19 Score=160.93 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=110.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||... +...+..++..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-------FQSLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-------hhhhhHHHhhc
Confidence 3799999999999999999998765444445555566666676662 6789999999754 22223345678
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA-----EEVYEELERRVQGVPI 385 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~i 385 (423)
+|++++|+|+++. .++.....++.++..+.. .....|.++|+||+|+... .+....+.+.....++
T Consensus 82 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 82 ADCCVLVYDVTNA-------SSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp CCEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred CCEEEEEEECCCh-------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 9999999999872 455556666666654431 1247899999999999532 2334455554456789
Q ss_pred EEEecccCcCHHHHHHHHHHHhcc
Q 014494 386 YPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+++||+++.|+++++++|.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 36
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.82 E-value=4.9e-21 Score=193.79 Aligned_cols=163 Identities=30% Similarity=0.487 Sum_probs=98.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe---------------------CC---eeEEEEcCCCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF---------------------DD---IQITVADIPGL 292 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~---------------------~~---~~i~l~DtpG~ 292 (423)
+|+|||.||||||||+|+|++.+..+++|||||.+++.|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999998877899999999999997543 22 57999999999
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCC----CCCcHHHHHHHHHHHHhhh-------------------
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRK----GIKPWKQLRDLIIELEHHQ------------------- 349 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~----~~~~~~~~~~l~~eL~~~~------------------- 349 (423)
.++++.+.+++..|+.+++.||++++|+|+++..+... ..+|..++..+..||..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~~ 161 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQK 161 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 98888888888888889999999999999987411000 1246655555444443220
Q ss_pred ------------------------------------------------cccCCCCeEEEEeCCCcCChHHHHHHHHHHcC
Q 014494 350 ------------------------------------------------EGLSDRPSLVVANKIDEDGAEEVYEELERRVQ 381 (423)
Q Consensus 350 ------------------------------------------------~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~ 381 (423)
..+..+|+|+|+||+|+. ..+.++.+.+.+.
T Consensus 162 ~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~~ 240 (397)
T 1wxq_A 162 IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREEE 240 (397)
T ss_dssp CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHHh
Confidence 001259999999999998 4454556655542
Q ss_pred --CCcEEEEecccCcCHHHHH
Q 014494 382 --GVPIYPVCAVLEEGVPELK 400 (423)
Q Consensus 382 --~~~ii~vSA~~g~gi~eL~ 400 (423)
+.++++|||+.+.++++|+
T Consensus 241 ~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 241 KRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HTTCEEEEECHHHHHHHHSCS
T ss_pred hcCCcEEEEeccchhhHHHHH
Confidence 4689999999999998754
No 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=3.2e-19 Score=156.42 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=110.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++........+..+.......+.+++ ..+.+|||||..+ +...+..++..+|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~d 80 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER-------YHSLAPMYYRGAQ 80 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG-------GGGGHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------hhhhhHHhccCCC
Confidence 799999999999999999997654332222222223334455554 6789999999765 3333456778899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++.....++.++.... ....|.++|+||+|+... .+....+.... +.+++++||
T Consensus 81 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 150 (170)
T 1r2q_A 81 AAIVVYDITNE-------ESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAVDFQEAQSYADDN-SLLFMETSA 150 (170)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECCT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccccCHHHHHHHHHHc-CCeEEEEeC
Confidence 99999999862 45566666666665442 246889999999998643 12233333333 578999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 151 ~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.82 E-value=4e-19 Score=157.34 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=112.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||||..+ +...+..++..+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 88 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER-------FRAVTRSYYRGA 88 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG-------TCHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH-------hhhhHHHHhccC
Confidence 3799999999999999999998754332223233334445566665 5789999999754 334456778899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+.. .+.|.++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 89 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 158 (179)
T 1z0f_A 89 AGALMVYDITRR-------STYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-GLLFLEAS 158 (179)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEeCcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 999999999872 445556666666655432 378999999999996431 2233333333 57899999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|+++.|+++++++|.+.+.
T Consensus 159 a~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp TTTCTTHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 39
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=7.7e-20 Score=164.09 Aligned_cols=158 Identities=23% Similarity=0.423 Sum_probs=118.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++....+..++++|.++..+.+.+++..+.+|||||+....... ..+...++.. ..++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EKPD 87 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc-cCCC
Confidence 799999999999999999999877778888889999999999999999999999987642210 0122222211 3589
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|.++ ......+..++.. .+.|.|+|+||+|+.... ...+.+.+.+ +.+++++||+
T Consensus 88 ~~i~v~d~~~----------~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 151 (188)
T 2wjg_A 88 LVVNIVDATA----------LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLSAA 151 (188)
T ss_dssp EEEEEEEGGG----------HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBGG
T ss_pred EEEEEecchh----------HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEEec
Confidence 9999999875 3444455555533 368999999999986432 1234455444 4689999999
Q ss_pred cCcCHHHHHHHHHHHhcccc
Q 014494 392 LEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~~ 411 (423)
++.|+++++++|.+.+.+..
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999987665
No 40
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=167.03 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=110.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHh
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIE 311 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~ 311 (423)
...+|+++|.+|||||||+++|++.. ....+..|+.+.....+.+++ ..+.+|||||+.+.... +..++.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~ 90 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------RPLCYT 90 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------GGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------hHhhcC
Confidence 34589999999999999999999865 445666666666666677776 46779999998763321 123567
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------------HHHH
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYE 374 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------------~~~~ 374 (423)
.+|++++|+|+++. .++.... .|+.++..+. .+.|+++|+||+|+.... +...
T Consensus 91 ~~~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 160 (201)
T 2q3h_A 91 NTDIFLLCFSVVSP-------SSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAK 160 (201)
T ss_dssp TCSEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred CCcEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHH
Confidence 89999999999872 4455554 4656665443 378999999999997521 2233
Q ss_pred HHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 375 ELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 375 ~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
.+.+.+...+++++||+++.|+++++++|.+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 161 LLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 444444334899999999999999999998877544
No 41
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=1.6e-19 Score=168.24 Aligned_cols=167 Identities=23% Similarity=0.361 Sum_probs=114.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccc--hHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL--GHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l--~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++....+.+++++|.......+.+.+..+.+|||||+.......... ...+......+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 109 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHIN 109 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccc
Confidence 4899999999999999999999876667788999988888888888999999999997643322211 11223345778
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-------HHHHHHHHc-CCCcE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-------VYEELERRV-QGVPI 385 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-------~~~~l~~~~-~~~~i 385 (423)
|++++|+|+++... ........++..+... ....|+++|+||+|+....+ ..+.+.... ...++
T Consensus 110 d~~i~v~d~~~~~s-----~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 110 GVILFIIDISEQCG-----LTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp EEEEEEEETTCTTS-----SCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred cEEEEEEecccccC-----cchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999987311 1122233444444332 23789999999999975421 223333332 12689
Q ss_pred EEEecccCcCHHHHHHHHHHHhccc
Q 014494 386 YPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
++|||+++.|+++++++|.+.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998887543
No 42
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=2.8e-19 Score=163.43 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=113.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER-------FRTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG-------GHHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHHhhC
Confidence 4799999999999999999998754332223233445556677776 5899999999865 344456678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCC-cEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGV-PIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~-~ii~v 388 (423)
|++++|+|+++. .++..+..++.++..+. ..+.|+|+|+||+|+... .+....+.+.+ +. +++++
T Consensus 103 d~iilv~D~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~~ 172 (201)
T 2hup_A 103 NGAILAYDITKR-------SSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHY-DILCAIET 172 (201)
T ss_dssp SEEEEEEETTBH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCSEEEEC
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHc-CCCEEEEE
Confidence 999999999872 45566666766665543 246899999999999652 22234444444 45 89999
Q ss_pred ecccCcCHHHHHHHHHHHhcccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
||+++.|+++++++|.+.+.+..
T Consensus 173 SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 173 SAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998876543
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.1e-19 Score=161.60 Aligned_cols=159 Identities=21% Similarity=0.226 Sum_probs=113.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++.... .+ ..|.......+.+++..+.+|||||+.+.. ..+..++..+|+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEETTEEEEEEECCC----C-------GGGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCE
Confidence 48999999999999999999976443 22 234445566778888999999999986522 223456788999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-c--CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-~--~~~~ii~vS 389 (423)
+++|+|+++ ..++.....++.++.... ...+.|.++|+||+|+... +++.+.+... + .+.+++++|
T Consensus 87 ii~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 87 VIVVVDSTD-------RERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp EEEEEETTC-------TTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred EEEEEeCCC-------HHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 999999987 356676666666664421 1357999999999999753 3333333221 1 245789999
Q ss_pred cccCcCHHHHHHHHHHHhccccC
Q 014494 390 AVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
|+++.|+++++++|.+.+.....
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC---
T ss_pred CCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876544
No 44
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=2.1e-19 Score=158.15 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=112.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
..+|+++|.+|||||||+++|++.... . + ..|.......+.+++..+.+|||||+.... ..+..++..+|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-T-T-IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-C-C-CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-C-c-CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 348999999999999999999876432 1 1 224455667788888999999999986522 22334567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-c--CCCcEEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPV 388 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-~--~~~~ii~v 388 (423)
++++|+|+++. .++.....++..+... ....+.|.++|+||+|+... .++.+.+... . .+.+++++
T Consensus 77 ~ii~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 77 AVIYVVDSCDR-------DRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp EEEEEEETTCC-------TTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 99999999873 4566555555544322 12357899999999999764 3333333221 1 24479999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+++.|+++++++|.+.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.82 E-value=1.1e-19 Score=164.37 Aligned_cols=161 Identities=22% Similarity=0.272 Sum_probs=114.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+|+|.+|||||||+++|++......+|.. |.......+...+..+.+|||||+.+.. ..+..++..+|+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 89 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNIDA 89 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCCE
Confidence 38999999999999999999987654423333 3445556677778999999999986522 223345678999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc------ccCCCCeEEEEeCCCcCCh---HHHHHHHHHH----cCC
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE------GLSDRPSLVVANKIDEDGA---EEVYEELERR----VQG 382 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~------~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~----~~~ 382 (423)
+++|+|+++ ..++.....++.++..... .....|+|+|+||+|+... +++.+.+... ...
T Consensus 90 ii~v~D~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 90 VIFVVDSSD-------HLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp EEEEEETTC-------GGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred EEEEEECCc-------HHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence 999999997 3556666666665543211 0127899999999999865 3433333211 135
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.++++|||+++.|+++++++|.+.+.+..
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998876543
No 46
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.3e-19 Score=166.13 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=117.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +......++..+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHHhcC
Confidence 3899999999999999999998765544555555566666777776 5789999999754 333444567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+.. ...|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 100 d~~i~v~D~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 169 (201)
T 2ew1_A 100 NALILTYDITCE-------ESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQ-DMYYLETS 169 (201)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCCEEECC
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 999999999872 455556666666655432 36899999999999643 22233343333 57899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 170 a~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998877543
No 47
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=7.7e-20 Score=176.00 Aligned_cols=156 Identities=21% Similarity=0.348 Sum_probs=117.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc--cccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~--~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.||||||||+|+|++....++++|++|.++..+.+.. +..+.+|||||+.+.... ...+...++.. ..+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CCC
Confidence 37999999999999999999998888999999999998888776 788999999999764321 11122222221 369
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEec
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA 390 (423)
|++++|+|+++ .+....+..++.. ...|+|+|+||+|+.... ...+.+.+.+ +.+++++||
T Consensus 82 d~vi~V~D~t~----------~e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~SA 145 (272)
T 3b1v_A 82 DSILNVVDATN----------LERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVATSA 145 (272)
T ss_dssp SEEEEEEEGGG----------HHHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECBT
T ss_pred CEEEEEecCCc----------hHhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEEEc
Confidence 99999999986 2333344444433 378999999999985321 1234455554 578999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++|+++|.+.+..
T Consensus 146 ~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTTBSHHHHHHHHHHSCTT
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 48
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.82 E-value=5.9e-20 Score=175.43 Aligned_cols=155 Identities=23% Similarity=0.381 Sum_probs=119.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc--ccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN--RGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~--~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+|+|++....++++|++|.+...+.+.+.+..+.+|||||+.+..... ..+...|+.. ..+|
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~~d 85 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GDAD 85 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cCCC
Confidence 799999999999999999999888889999999999999999988999999999997643211 1122233322 5799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++. +....+..++.. ...|+++|+||+|+..... ..+.+.+.+ +.+++++||+
T Consensus 86 ~ii~V~D~t~~----------~~~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~SA~ 149 (258)
T 3a1s_A 86 LVILVADSVNP----------EQSLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFTSSV 149 (258)
T ss_dssp EEEEEEETTSC----------HHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEECCTT
T ss_pred EEEEEeCCCch----------hhHHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEEEee
Confidence 99999999862 222334444433 2789999999999854321 134555555 5799999999
Q ss_pred cCcCHHHHHHHHHHHhc
Q 014494 392 LEEGVPELKVGLRMLVN 408 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~ 408 (423)
++.|+++|++.|.+.+.
T Consensus 150 ~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 99999999999998875
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=5.1e-19 Score=157.79 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=116.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.. ....+..++.......+.+++ ..+.+|||||..+ +...+..++..+|
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d 91 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSGE 91 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-------cHHHHHHHhccCC
Confidence 79999999999999999999865 345566666655556666766 4789999999765 3344556778899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....++.++..+.. ..+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 92 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 162 (187)
T 2a9k_A 92 GFLCVFSITEM-------ESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNYVETSA 162 (187)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECCT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHc-CCeEEEeCC
Confidence 99999999872 455566666666655432 237899999999998653 12223333333 568999999
Q ss_pred ccCcCHHHHHHHHHHHhccc
Q 014494 391 VLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++.|+++++++|.+.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998887543
No 50
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.82 E-value=4.4e-19 Score=161.43 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=115.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||+.. +...+..++..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-------YRTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh-------hcchHHHhhcCC
Confidence 3799999999999999999998764433333333334445555554 6889999999864 334455678899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+. ....|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 82 d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 151 (203)
T 1zbd_A 82 MGFILMYDITNE-------ESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL-GFEFFEAS 151 (203)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHHC-CCeEEEEE
Confidence 999999999872 45566666766665542 247899999999999753 23334444444 56899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 152 a~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877644
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=8.7e-20 Score=167.02 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=118.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..... ..+..++..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcc
Confidence 45899999999999999999998766555556666666677777777 679999999976522 223456788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEe
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vS 389 (423)
+|++++|+|+++. ..+..+..++.++..+.. ...|+++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 93 ~d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 162 (213)
T 3cph_A 93 AMGIILVYDVTDE-------RTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKEL-GIPFIESS 162 (213)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHH-TCCEEECB
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHc-CCEEEEEe
Confidence 9999999999862 345555666666654422 36899999999999532 23334444443 56899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 163 a~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 52
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.81 E-value=1.4e-19 Score=160.63 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=116.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.+|||||..+... + ...++..+|
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~~~d 82 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----M---REQYMRAGH 82 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----C---HHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhhCC
Confidence 79999999999999999999863 345566666555556677776 5788999999865321 2 334567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++..+..++.++.... ...+.|.++|+||+|+... .+....+.... +.+++++||
T Consensus 83 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 153 (181)
T 2fn4_A 83 GFLLVFAIND-------RQSFNEVGKLFTQILRVK-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASH-HVAYFEASA 153 (181)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHH-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEECBT
T ss_pred EEEEEEeCCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHc-CCeEEEecC
Confidence 9999999987 245556666665553321 2347899999999998653 22233444333 678999999
Q ss_pred ccCcCHHHHHHHHHHHhccccC
Q 014494 391 VLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+++.|+++++++|.+.+.+...
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999988865543
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-19 Score=163.26 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=113.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||.... ......++..+|
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d 89 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF-------RTLTPSYYRGAQ 89 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG-------CCSHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHHHhccCC
Confidence 799999999999999999998765444444444455556666665 67899999997652 222446678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++. ..+..+..++.++..+. .....|.++|+||+|+.... +....+.+.. +.+++++||+
T Consensus 90 ~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 160 (195)
T 1x3s_A 90 GVILVYDVTRR-------DTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKENREVDRNEGLKFARKH-SMLFIEASAK 160 (195)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHT-TCEEEECCTT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCcccccCHHHHHHHHHHc-CCEEEEecCC
Confidence 99999999862 34555556656554332 12468999999999995431 2223333333 5689999999
Q ss_pred cCcCHHHHHHHHHHHhccc
Q 014494 392 LEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~ 410 (423)
++.|+++++++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 54
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=6.3e-20 Score=162.84 Aligned_cols=157 Identities=24% Similarity=0.237 Sum_probs=115.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
..+|+++|.+|||||||+++|++.......++.+|.+.....+.+++..+.+|||||+.+..... ..++..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR-------ARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC-------CSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH-------HHHHhhCC
Confidence 45899999999999999999999877766777777777777888889999999999986643321 24467799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHHHHHHHc---C----CCcE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYEELERRV---Q----GVPI 385 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~~l~~~~---~----~~~i 385 (423)
++++|+|+++. .....+. .+..+. ..+.|.++|+||+|+... ++....+.+.. . ..++
T Consensus 81 ~~i~v~d~~~~-------~~~~~~~-~l~~~~-----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 81 IVILVVAADDG-------VMPQTVE-AINHAK-----AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp EEEEEEETTCC-------CCHHHHH-HHHHHG-----GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred EEEEEEECCCC-------CcHHHHH-HHHHHH-----hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccE
Confidence 99999998763 2222222 222221 137899999999999864 23333332211 0 1479
Q ss_pred EEEecccCcCHHHHHHHHHHHhcccc
Q 014494 386 YPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++||+++.|+++++++|.+.+....
T Consensus 148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 148 CKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999998877554
No 55
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=161.47 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=118.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|||.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||+|..... ......++..+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------GWLRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------HHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch------hhhHHHhhccC
Confidence 3899999999999999999987655445566677777777777777 567889999986411 11223456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++..... ....|+|+|+||+|+... .+....+.+.+ +.+++++|
T Consensus 98 d~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~S 168 (195)
T 3cbq_A 98 DAFLIVFSVTD-------RRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTL-SCKHIETS 168 (195)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEEEEEB
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHh-CCEEEEEc
Confidence 99999999987 2456666667666654321 237899999999999743 12234444444 46899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+++.|++++++.|.+.+.+..
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998876543
No 56
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=2.9e-19 Score=161.66 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=110.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC--CCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV--GHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i--~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|+|+|.+|||||||+++|++..... .....++ .....+.+++ ..+.+|||||..+ +...+..++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 95 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS--FMTKTVPCGNELHKFLIWDTAGQER-------FHSLAPMYYRG 95 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEE--EEEEEEECSSSEEEEEEEEECCSGG-------GGGGTHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCccee--EEEEEEEeCCEEEEEEEEcCCCchh-------hHhhhHHhhcc
Confidence 79999999999999999999875432 2222222 2233344443 6899999999765 22234466788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
+|++++|+|+++ ...+..+..++.++..+. ....|.++|+||+|+... .+....+.+.+ +.+++++
T Consensus 96 ~d~iilV~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 165 (192)
T 2fg5_A 96 SAAAVIVYDITK-------QDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAESI-GAIVVET 165 (192)
T ss_dssp CSEEEEEEETTC-------THHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT-TCEEEEC
T ss_pred CCEEEEEEeCCC-------HHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEE
Confidence 999999999987 356667777777776543 247899999999999642 22233344333 5789999
Q ss_pred ecccCcCHHHHHHHHHHHhcccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
||+++.|+++++++|.+.+.+.+
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 166 SAKNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp BTTTTBSHHHHHHHHHHTCC---
T ss_pred eCCCCcCHHHHHHHHHHHHHhhC
Confidence 99999999999999998876543
No 57
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.81 E-value=2.1e-19 Score=164.15 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=118.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+.... +..++..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI-------TSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-------CGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH-------HHHhccCC
Confidence 3799999999999999999998766555556666666667777776 47999999997653221 23456889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+. ....|.++|+||+|+... .+....+.... +.+++++|
T Consensus 82 d~vilv~d~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 151 (206)
T 2bcg_Y 82 HGIIIVYDVTDQ-------ESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN-KMPFLETS 151 (206)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCCEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeEEEEe
Confidence 999999999872 45666666766665543 236899999999999753 22333444443 57899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 152 a~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 58
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.81 E-value=1.6e-19 Score=179.84 Aligned_cols=173 Identities=29% Similarity=0.495 Sum_probs=125.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC-----------------eeEEEEcCCCCcCCccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLIKGAHE 298 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~-----------------~~i~l~DtpG~i~~a~~ 298 (423)
.+|+|||.||||||||+|+|++....+++|||+|+.|+.|.+.+++ ..+.++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 4799999999999999999999988889999999999999998876 46999999999999988
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCC---CCCCcHHHHHHHHHHHHh----------------------------
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGR---KGIKPWKQLRDLIIELEH---------------------------- 347 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~---~~~~~~~~~~~l~~eL~~---------------------------- 347 (423)
+.+++..|+.+++.||++++|+|+++..+.. ...+|..++..+..||..
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 8889999999999999999999998732100 013566665554444420
Q ss_pred ---------hh---------------------cccCCCCeEEEEeCCCcCC-hHHHHHHHHHHc--CCCcEEEEeccc--
Q 014494 348 ---------HQ---------------------EGLSDRPSLVVANKIDEDG-AEEVYEELERRV--QGVPIYPVCAVL-- 392 (423)
Q Consensus 348 ---------~~---------------------~~l~~~P~IiVlNKiDl~~-~~~~~~~l~~~~--~~~~ii~vSA~~-- 392 (423)
+. .-+..+|+|+|+|+.|... .+...+.+++.. .+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~ 242 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES 242 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence 00 0134599999999999652 234455555544 356899999764
Q ss_pred --------------------CcCHHHHHHHHHHHhc
Q 014494 393 --------------------EEGVPELKVGLRMLVN 408 (423)
Q Consensus 393 --------------------g~gi~eL~~~i~~~l~ 408 (423)
..|++.|+..+.++|.
T Consensus 243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~ 278 (363)
T 1jal_A 243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (363)
T ss_dssp HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence 3577777777776664
No 59
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.81 E-value=3e-19 Score=159.72 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=118.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-------FRSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHHhcC
Confidence 3799999999999999999998766555566666666677777777 6889999999765 344455677889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+.. .+.|.++|+||+|+.... .....+... .+.+++++|
T Consensus 84 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 153 (186)
T 2bme_A 84 AGALLVYDITSR-------ETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQE-NELMFLETS 153 (186)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEec
Confidence 999999999872 455555666666654422 478999999999996421 222333333 357899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 154 a~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=1.1e-18 Score=158.50 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=117.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.+|||||..+ +......++..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-------YAAIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-------CHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh-------hHHHHHHHHhhC
Confidence 379999999999999999999865 345666776666666677776 4789999999765 333445667889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++.....++.++..+.. ....|+++|+||+|+.... +....+.+.+ +.+++++|
T Consensus 87 ~~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 157 (206)
T 2bov_A 87 EGFLCVFSITEM-------ESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNYVETS 157 (206)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEC
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHh-CCeEEEEe
Confidence 999999999872 455666666666655421 2378999999999996531 2222333333 46899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 158 a~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=2.1e-19 Score=161.85 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=113.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+.+ ..+.+|||||...... .+..++..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-------ITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-------SGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-------hHHHhccCC
Confidence 3799999999999999999998764433333333333444555554 6889999999765322 223456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++.....++.++..+. ..+.|+++|+||+|+... .+..+.+.+.+ +.+++++|
T Consensus 96 d~ii~v~d~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~S 165 (189)
T 2gf9_A 96 MGFLLMYDIANQ-------ESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL-GFEFFEAS 165 (189)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEECB
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHc-CCeEEEEE
Confidence 999999999862 45566666666665542 247899999999999653 23334444444 56899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 166 a~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 166 AKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 62
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.81 E-value=6.4e-20 Score=163.89 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=93.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||||..+... .+..++..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 3799999999999999999998655444455555566666777777 7899999999865222 123456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+. ..+.|.++|+||+|+... .+....+.+.+ +.+++++|
T Consensus 82 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 151 (183)
T 2fu5_C 82 MGIMLVYDITNE-------KSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETS 151 (183)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH-TCEEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcCCHHHHHHHHHHc-CCeEEEEe
Confidence 999999999872 45566666666665542 236899999999999642 22333444443 56899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 152 a~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 152 AKANINVENAFFTLARDIKA 171 (183)
T ss_dssp C---CCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 63
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=2.2e-19 Score=184.08 Aligned_cols=161 Identities=22% Similarity=0.246 Sum_probs=109.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc--cccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE--NRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~--~~~l~~~fl~~i~~ 312 (423)
++|+|||.||+|||||+|+|++.+.. +.++|++|.+...+.+.+.+..+.+|||||+...... ...+..+...+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 68999999999999999999998754 6899999999999999999999999999998764321 11244556778999
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-HHHH-HHHHHHcCCCcEEEEec
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-EEVY-EELERRVQGVPIYPVCA 390 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-~~~~-~~l~~~~~~~~ii~vSA 390 (423)
||++++|+|+.... .... ..+...+.. .++|.++|+||+|+... .... ..+.+ +.-.++++|||
T Consensus 82 ad~il~V~D~~~~~------~~~d--~~i~~~l~~-----~~~p~ilv~NK~D~~~~~~~~~~~~~~~-lg~~~~~~iSA 147 (439)
T 1mky_A 82 ADLVLFVVDGKRGI------TKED--ESLADFLRK-----STVDTILVANKAENLREFEREVKPELYS-LGFGEPIPVSA 147 (439)
T ss_dssp CSEEEEEEETTTCC------CHHH--HHHHHHHHH-----HTCCEEEEEESCCSHHHHHHHTHHHHGG-GSSCSCEECBT
T ss_pred CCEEEEEEECCCCC------CHHH--HHHHHHHHH-----cCCCEEEEEeCCCCccccHHHHHHHHHh-cCCCCEEEEec
Confidence 99999999997631 2211 122222322 27899999999998643 1111 22221 12236899999
Q ss_pred ccCcCHHHHHHHHHHHhccc
Q 014494 391 VLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~ 410 (423)
++|.|+++|++.|.+.+.+.
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcccc
Confidence 99999999999999888643
No 64
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=163.74 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=113.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++.......+. .|.......+.+++..+.+|||||..+.. ..+..++..+|+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~ 93 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQA 93 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCCE
Confidence 4899999999999999999998753333333 45566777888888999999999976532 223356788999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhccc--CCCCeEEEEeCCCcCCh---HHHHHHHH-HHc--CCCcEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGL--SDRPSLVVANKIDEDGA---EEVYEELE-RRV--QGVPIYP 387 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l--~~~P~IiVlNKiDl~~~---~~~~~~l~-~~~--~~~~ii~ 387 (423)
+++|+|+++. .++.....++.++... ..+ .+.|+++|+||+|+... +++.+.+. ..+ .+.++++
T Consensus 94 ii~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 2h57_A 94 IIFVIDSSDR-------LRMVVAKEELDTLLNH-PDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA 165 (190)
T ss_dssp EEEEEETTCH-------HHHHHHHHHHHHHHHS-TTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhC-hhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence 9999999862 3455555555554332 122 47899999999999754 23222222 111 2457999
Q ss_pred EecccCcCHHHHHHHHHHHhcccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+||+++.|+++++++|.+.+.+.+
T Consensus 166 ~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 166 SDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp CBTTTTBTHHHHHHHHHHHC----
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
No 65
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.81 E-value=6.8e-19 Score=156.49 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=110.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++..... +..|+.+.....+.+++ ..+.+|||||..+ ..++..+|
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~d 74 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWAD 74 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhCC
Confidence 79999999999999999999865432 33333344455566666 5688999999865 24567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc-cCCCCeEEEEeCCCcCC------hHHHHHHHHHHcCCCcEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDG------AEEVYEELERRVQGVPIYP 387 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IiVlNKiDl~~------~~~~~~~l~~~~~~~~ii~ 387 (423)
++++|+|+++ ..++..+..+..++..+... ..+.|.++|+||+|+.. ..+....+...+.+.++++
T Consensus 75 ~~ilv~D~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 75 AVIFVFSLED-------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 9999999987 24566666655555444221 24689999999999831 1223334444444578999
Q ss_pred EecccCcCHHHHHHHHHHHhccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+||+++.|+++++++|.+.+.+.
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876543
No 66
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=3.8e-19 Score=160.36 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=112.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+|+|.+|||||||+++|++....... ..|.......+...+..+.+|||||..+ +...+..++..+|+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYCRGVSA 93 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHHTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHHccCCE
Confidence 37999999999999999999986543222 2244445556777789999999999764 22234566789999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc---CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~---~~~~ii~vS 389 (423)
+++|+|+++. ..+.....++.++... ....+.|+++|+||+|+... .++.+.+.... ...++++||
T Consensus 94 ii~v~D~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 165 (188)
T 1zd9_A 94 IVYMVDAADQ-------EKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS 165 (188)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence 9999999872 4566666665555332 12357899999999999754 23222222111 235789999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 166 A~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 166 CKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp TTTCTTHHHHHHHHHHTCC--
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887653
No 67
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.81 E-value=1.6e-19 Score=163.52 Aligned_cols=152 Identities=24% Similarity=0.335 Sum_probs=111.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++.... .+ ..|..+..+.+.+++..+.+|||||+..... + +..++..+|+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR----L---WKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT----S---GGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH----H---HHHHHhcCCE
Confidence 38999999999999999999986542 22 2456677888889999999999999865222 1 2234578999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc--------------C
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--------------Q 381 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~--------------~ 381 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+..... .+.+.+.+ .
T Consensus 94 ~i~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 94 IVFLVDAADP-------ERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTCSSCCC---CCSSC
T ss_pred EEEEEECCCh-------HHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcCCCC-HHHHHHHhCCccccccccccccc
Confidence 9999999873 4566666666665432 1235789999999999975211 22233332 2
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHH
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
..+++++||++++|+++++++|.+.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 3469999999999999999998754
No 68
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=4.5e-19 Score=161.33 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=109.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +...+..++..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER-------FRSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT-------CHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc-------hhhhHHHHHhh
Confidence 34899999999999999999998754332223333344455566666 5689999999765 44456677889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------HHHHHHHHHHcCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------EEVYEELERRVQG 382 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------~~~~~~l~~~~~~ 382 (423)
+|++++|+|+++. ..+..+..++..+..+. ..+.|+++|+||+|+... .+....+...+ +
T Consensus 101 ~d~iilv~d~~~~-------~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~-~ 170 (199)
T 2p5s_A 101 ADGVLLLYDVTCE-------KSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY-G 170 (199)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH-T
T ss_pred CCEEEEEEECCCh-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHc-C
Confidence 9999999999862 44555566666665432 136899999999998621 12233333333 5
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
.+++++||+++.|+++++.+|.+.+.+
T Consensus 171 ~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 171 ALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887753
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=1.9e-18 Score=150.35 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=112.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..++.......+.+++ ..+.+|||||..+ +......++..+|
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 76 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 76 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS-------CCHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchh-------hhHHHHHhhccCC
Confidence 689999999999999999998643 23344444444445566665 5678999999765 2233445678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++ ...+.....+..++..+.. ..+.|.++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 77 ~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 147 (166)
T 2ce2_X 77 GFLCVFAINN-------TKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSY-GIPYIETSAK 147 (166)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEEECTT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHc-CCeEEEecCC
Confidence 9999999986 2455566666666655432 236899999999998753 23344444444 5689999999
Q ss_pred cCcCHHHHHHHHHHHhcc
Q 014494 392 LEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~ 409 (423)
++.|+++++++|.+.+.+
T Consensus 148 ~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887643
No 70
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=6.2e-19 Score=158.10 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=112.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecce-EEEEEeCC-----------eeEEEEcCCCCcCCccccccchH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN-LGNMNFDD-----------IQITVADIPGLIKGAHENRGLGH 304 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~-~g~v~~~~-----------~~i~l~DtpG~i~~a~~~~~l~~ 304 (423)
+|+|+|.+|||||||+++|++........+..+.+.. ...+.+++ ..+.+|||||+.+ +..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~ 85 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FRS 85 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HHH
Confidence 7999999999999999999986543333332223333 33455553 4799999999854 444
Q ss_pred HHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHc
Q 014494 305 AFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRV 380 (423)
Q Consensus 305 ~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~ 380 (423)
.+..++..+|++++|+|+++. .....+..++.++..+. .....|.++|+||+|+... .+....+.+.+
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNE-------QSFLNVRNWISQLQMHA-YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCH-------HHHHTHHHHHHHHHHHS-SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEECCCH-------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 566778899999999999872 44555566666655432 1247899999999998652 22333444433
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+.+++++||+++.|+++++++|.+.+.+.
T Consensus 158 -~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 -GIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp -TCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999998877543
No 71
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.81 E-value=3.6e-19 Score=160.76 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=113.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+... .+..++..+|
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 95 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGAA 95 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTCS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhccCC
Confidence 799999999999999999998766555555555566666777776 5889999999765222 2345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++..+..++.++..+. ..+.|+++|+||+|+... .+....+.+.. +.+++++||
T Consensus 96 ~ii~v~d~~~~-------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 165 (191)
T 2a5j_A 96 GALLVYDITRR-------ETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDVKREEGEAFAREH-GLIFMETSA 165 (191)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEECT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCccccCHHHHHHHHHHc-CCEEEEEeC
Confidence 99999999872 45566666666665432 237899999999999642 22233344333 568999999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|+++++++|.+.+.+
T Consensus 166 ~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877654
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=2.8e-19 Score=162.93 Aligned_cols=160 Identities=15% Similarity=0.111 Sum_probs=116.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||....... +..++..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-------GVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-------CCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-------HHHHHhCC
Confidence 3799999999999999999998765544445555666666777766 57899999997653221 12456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEE
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~v 388 (423)
|++++|+|+++. .++..+..++.++..... .....|.++|+||+|+.... +....+.......+++++
T Consensus 82 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (207)
T 1vg8_A 82 DCCVLVFDVTAP-------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFET 154 (207)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred cEEEEEEECCCH-------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEE
Confidence 999999999872 445555666666554321 11368999999999997432 233344443456789999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+++.|+++++++|.+.+.+
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 155 SAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 73
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.8e-19 Score=162.77 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=116.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+|+|+|.+|||||||+++|++........+..+.+.....+.+.+ ..+.+|||||... +......++..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER-------YRTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH-------CHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHHcc
Confidence 34899999999999999999998654333333333334444555544 6799999999654 34455667889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
+|++++|+|+++ ..++..+..++.++..+. ..+.|+++|+||+|+... .+..+.+.+.+ +.+++++
T Consensus 96 ~d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 165 (191)
T 3dz8_A 96 AMGFILMYDITN-------EESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL-GFDFFEA 165 (191)
T ss_dssp CCEEEEEEETTC-------HHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEC
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHc-CCeEEEE
Confidence 999999999987 255666677777776543 247899999999998643 23334444444 5689999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||+++.|+++++++|.+.+.+.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998877543
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=158.89 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=111.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||+.+. ...+..++..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY-------RAITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT-------CTTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHHHhccC
Confidence 3899999999999999999998755433333223333344455544 67899999998652 22344667899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. ..+.....++.++..+. ....|.++|+||+|+... .+....+... .+.+++++|
T Consensus 99 d~vi~v~D~~~~-------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~S 168 (193)
T 2oil_A 99 VGALLVFDLTKH-------QTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAEN-NGLLFLETS 168 (193)
T ss_dssp CEEEEEEETTCH-------HHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEEEC
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHH-cCCEEEEEe
Confidence 999999999872 34455556666664432 246899999999999653 2223333333 357899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 169 a~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877643
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=3e-19 Score=159.19 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=115.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.+|||||+.+.... ...++..+|
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~~ 79 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-------PQTYSIDIN 79 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-------CGGGTTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH-------HHHHHhcCC
Confidence 79999999999999999999754 455566666555566677777 56789999998763221 123457799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++..+..+..++..+. ...+.|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 80 ~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 150 (181)
T 3t5g_A 80 GYILVYSVTS-------IKSFEVIKVIHGKLLDMV-GKVQIPIMLVGNKKDLHMERVISYEEGKALAESW-NAAFLESSA 150 (181)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT-TCEEEECCT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcceecHHHHHHHHHHh-CCcEEEEec
Confidence 9999999987 255666666666664432 1236899999999998643 23344444444 568999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++.|++++++.|.+.+.+..
T Consensus 151 ~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999887654
No 76
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.80 E-value=1e-19 Score=159.55 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=98.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+++|.+|||||||+++|++.... ....+++|.. ..+.+++ ..+.+|||||.... ......++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGG-------RWLPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccc-------hhhhhhhhhh
Confidence 47999999999999999999976543 2334444432 3344554 57889999998652 2223345688
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
++++++|+|+++ ..++.....++.++..+. ...+.|.++|+||+|+... .+....+.... +.+++++
T Consensus 73 ~~~~i~v~d~~~-------~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 143 (166)
T 3q72_A 73 GDAYVIVYSVTD-------KGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-DCKFIET 143 (166)
T ss_dssp CCEEEEEEETTC-------HHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT-TCEEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHHHh-CCcEEEe
Confidence 999999999987 245666666666665432 2247899999999998743 22333444443 5789999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+++.|+++++++|.+.+.+
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 77
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.80 E-value=3.8e-19 Score=177.92 Aligned_cols=89 Identities=40% Similarity=0.748 Sum_probs=81.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC---------------------eeEEEEcCCCCcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD---------------------IQITVADIPGLIK 294 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~---------------------~~i~l~DtpG~i~ 294 (423)
.+|+|||.||||||||+|+|++..+.+++|||+|+.|+.+.+.+++ ..+.++||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 3799999999999999999999877889999999999999987643 4699999999999
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCC
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLAS 324 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~ 324 (423)
+++.+.+++..|+.+++.||++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999888999999999999999999999986
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.1e-19 Score=160.58 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=110.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++...... +..+.-......+..++ ..+.+|||||+.+ +...+..++..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 80 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDT-YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ-------FPAMQRLSISKG 80 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCT-TSCCCCEEEEEEEEETTEEEEEEEEECCGGGS-------CHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCc-ccCccccceeEEEEECCEEEEEEEEeCCChHH-------hHHHHHHhhccC
Confidence 3799999999999999999998644322 22221112223344444 5789999999765 333445667889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEec
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA 390 (423)
|++++|+|+++. ..+.....++..+..+.....+.|+|+|+||+|+... .+....+...+ +.+++++||
T Consensus 81 d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa 152 (199)
T 2gf0_A 81 HAFILVFSVTSK-------QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEW-KCAFMETSA 152 (199)
T ss_dssp SEEEEEEETTCH-------HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHH-TCEEEECBT
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHh-CCeEEEEec
Confidence 999999999862 3455555555555544333347899999999999753 22233333333 468999999
Q ss_pred ccCcCHHHHHHHHHHHhccc
Q 014494 391 VLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++.|+++++++|.+.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999988654
No 79
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.80 E-value=1e-18 Score=174.40 Aligned_cols=168 Identities=29% Similarity=0.391 Sum_probs=124.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch--HHHHHHHh
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG--HAFLRHIE 311 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~--~~fl~~i~ 311 (423)
....|+++|++|||||||+++|++..+.+.+++++|..+..+.+...+..+.++||||+........... ..+.....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 245 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY 245 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence 4458999999999999999999998877888999999999998888888999999999976432211111 12222233
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc--CCCcEEEEe
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV--QGVPIYPVC 389 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~--~~~~ii~vS 389 (423)
.+|.+++|+|++... ..+......++.++..... +.|+|+|+||+|+...... +.+.+.. .+.++++||
T Consensus 246 ~ad~illV~D~s~~~-----~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 246 LGNLIIYIFDPSEHC-----GFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEENI-KRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp TCSEEEEEECTTCTT-----SSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHHHH-HHHHHHHHHTTCCCEECB
T ss_pred cCCEEEEEEeCCccc-----cCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChHHH-HHHHHHHHhcCCCeEEEe
Confidence 589999999988631 0145555566666654322 7999999999999876543 2222211 356899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|++|+|+++|+++|.+.+...
T Consensus 317 A~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=8e-19 Score=158.08 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=112.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccch-HHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLG-HAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~-~~fl~~i~~ 312 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..+ +. ..+..++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~ 93 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQHYYRN 93 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHHHhcC
Confidence 3899999999999999999998765544445555555666777776 5899999999754 22 223456788
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~v 388 (423)
+|++++|+|+++. .++..+..++.++..+. ...+.|.++|+||+|+... .+..+.+.+.+ +.+++++
T Consensus 94 ~d~iilv~D~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 164 (189)
T 1z06_A 94 VHAVVFVYDMTNM-------ASFHSLPAWIEECKQHL-LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH-SMPLFET 164 (189)
T ss_dssp CCEEEEEEETTCH-------HHHHTHHHHHHHHHHHC-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCCEEEC
T ss_pred CCEEEEEEECcCH-------HHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccceeCHHHHHHHHHHc-CCEEEEE
Confidence 9999999999872 44555666666665442 1247899999999999643 23344444443 5689999
Q ss_pred ecccC---cCHHHHHHHHHHHhc
Q 014494 389 CAVLE---EGVPELKVGLRMLVN 408 (423)
Q Consensus 389 SA~~g---~gi~eL~~~i~~~l~ 408 (423)
||+++ .|+++++++|.+.+.
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 99999 999999999877664
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=1.2e-18 Score=156.83 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=110.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..++.......+.+++ ..+.+|||||..+ +......++..+|
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d 94 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE-------YSAMRDQYMRTGE 94 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHhhCcCC
Confidence 799999999999999999998643 34455555555555666666 5689999999764 2223345678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCCcEEEEecc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++++|+|+++. ..+..+..++.++..+.. ....|.++|+||+|+... .+....+.+.+ +.+++++||+
T Consensus 95 ~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 165 (190)
T 3con_A 95 GFLCVFAINNS-------KSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSY-GIPFIETSAK 165 (190)
T ss_dssp EEEEEEETTCH-------HHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHH-TCCEEECCTT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHc-CCeEEEEeCC
Confidence 99999999872 445566666666655432 236899999999998752 23334444443 4689999999
Q ss_pred cCcCHHHHHHHHHHHhccccC
Q 014494 392 LEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~~~ 412 (423)
++.|+++++++|.+.+.+...
T Consensus 166 ~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp TCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988866543
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.80 E-value=2.7e-19 Score=160.46 Aligned_cols=157 Identities=24% Similarity=0.222 Sum_probs=113.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++.. ...+. .|.......+.+++..+.+|||||+.+. ...+..++..+|+
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSL-------RSYWRNYFESTDG 88 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTEEEEEEEECCSHHH-------HTTGGGGCTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHhcCCCE
Confidence 489999999999999999999876 33332 2445566777788899999999998542 1222345678999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHH---cCCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERR---VQGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~---~~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+.... +..+.+... ....+++++|
T Consensus 89 ii~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1ksh_A 89 LIWVVDSADR-------QRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS 160 (186)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred EEEEEECcCH-------HHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence 9999999873 4566666666555432 123478999999999997642 222222111 1245799999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 161 AVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887653
No 83
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=6.4e-19 Score=158.22 Aligned_cols=155 Identities=28% Similarity=0.309 Sum_probs=110.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++... ..+ ..|.......+.+++..+.+|||||+.. +...+..++..+|+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~--~~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQGFKLNVWDIGGQRK-------IRPYWRSYFENTDI 86 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC--EEE-EEETTEEEEEEEETTEEEEEEECSSCGG-------GHHHHHHHHTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Ccc-cCcCCeEEEEEEECCEEEEEEECCCCHH-------HHHHHHHHhCCCCE
Confidence 4899999999999999999998632 111 1233334456777889999999999865 44456677889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-------CCCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~-------~~~~ii~v 388 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+..... .+.+.+.+ ...++++|
T Consensus 87 ~i~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (181)
T 1fzq_A 87 LIYVIDSADR-------KRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQSC 157 (181)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEEC
T ss_pred EEEEEECcCH-------HHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEEc
Confidence 9999999872 4555555555544221 1235789999999999975421 12222221 23568999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+++.|+++++++|.+.+.+
T Consensus 158 Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 158 SALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTTCTTHHHHHHHHHHTC--
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.80 E-value=1.7e-19 Score=164.60 Aligned_cols=153 Identities=19% Similarity=0.301 Sum_probs=106.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|||||||+++|++.... .+. .|..+..+.+.+++..+.+|||||+..... .+..++..+|++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~~ 96 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAINGI 96 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCEE
Confidence 7999999999999999999986532 222 355666788888899999999999865322 123456789999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH--------------
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-------------- 379 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-------------- 379 (423)
++|+|+++. .++.....++.++.... ...+.|.++|+||+|+... ++..+.+...
T Consensus 97 i~v~D~~~~-------~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 1f6b_A 97 VFLVDCADH-------ERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKEL 168 (198)
T ss_dssp EEEEETTCG-------GGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTC
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccc
Confidence 999999872 45666666666554321 2357999999999999752 2322222211
Q ss_pred -cCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 380 -VQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 380 -~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
....++++|||++++|+++++++|.+.+
T Consensus 169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1235799999999999999999987654
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=4e-19 Score=158.54 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=110.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++ ..+.+|||||+.+... ....++..+|
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 78 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQTD 78 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHhccCCc
Confidence 799999999999999999997543 33444454444444556666 5677999999865321 1223567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----------------HHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----------------~~~l~ 377 (423)
++++|+|+++. .++.... .++..+..+. .+.|.++|+||+|+...... ...+.
T Consensus 79 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 79 VSLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred EEEEEEECCCh-------hhHHHHHHHHHHHHHHhC---CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 99999999862 3455554 4555555443 27899999999999754321 22233
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+.+...+++++||+++.|++++++.|.+.+.+.+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 3332248999999999999999999998886543
No 86
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.80 E-value=6e-19 Score=159.57 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=111.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+++|++... ...+..|+.......+.+++ ..+.+|||||..+.. .....++..+|
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 96 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADSD 96 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTCS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCCc
Confidence 799999999999999999998753 34444454444445566666 456999999976522 22234567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCCh------HHHHHHHHHHcCCCcEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA------EEVYEELERRVQGVPIYP 387 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------~~~~~~l~~~~~~~~ii~ 387 (423)
++++|+|+++. .++..+ ..+...+..+ ..+.|.|+|+||+|+... .+....+.+.+....+++
T Consensus 97 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
T 3reg_A 97 VVLLCFAVNNR-------TSFDNISTKWEPEIKHY---IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIE 166 (194)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHH---CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEE
Confidence 99999999872 445554 4455555443 247899999999998642 233444444443333999
Q ss_pred EecccCcCHHHHHHHHHHHhcccc
Q 014494 388 VCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 388 vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+||+++.|+++++++|.+.+.+.+
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 167 ASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred eecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998876554
No 87
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=154.10 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=104.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++...... ++.+..+.....+.+++ ..+.+|||||+.... .......++..++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD-----KSWSQESCLQGGS 79 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC------------CHHHHHTTTSCS
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccc-----hhhhHHhhcccCC
Confidence 799999999999999999998754321 22222334455666766 478999999985420 1111223456789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++ ..++.....++.++..+. ...+.|.++|+||+|+.... +....+...+ +.+++++||
T Consensus 80 ~~i~v~d~~~-------~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 150 (175)
T 2nzj_A 80 AYVIVYSIAD-------RGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEEGRACAVVF-DCKFIETSA 150 (175)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHH-TSEEEECBT
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHc-CCeEEEEec
Confidence 9999999987 245666666666665431 12378999999999997531 2223333333 468999999
Q ss_pred ccCcCHHHHHHHHHHHhccc
Q 014494 391 VLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~ 410 (423)
+++.|+++++++|.+.+.+.
T Consensus 151 ~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887544
No 88
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=2e-18 Score=154.20 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=112.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe--eEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~--~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++.. ....+..++.......+.+++. .+.+|||||..... .....++..+|
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 91 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFS-------AMREQYMRTGD 91 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGC-------SSHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhH-------HHHHHHHhcCC
Confidence 79999999999999999999753 3344555554444666667664 46679999975522 22345677899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++..+..+..++..+. ...+.|+|+|+||+|+... .+....+.+.+ +.+++++||
T Consensus 92 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 162 (183)
T 3kkq_A 92 GFLIVYSVTDK-------ASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATKY-NIPYIETSA 162 (183)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH-TCCEEEEBC
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh-CCeEEEecc
Confidence 99999999872 45555666666654432 2347899999999998652 23344444444 478999999
Q ss_pred c-cCcCHHHHHHHHHHHhcc
Q 014494 391 V-LEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~-~g~gi~eL~~~i~~~l~~ 409 (423)
+ ++.|++++++.|.+.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 9 999999999999887753
No 89
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=1.3e-18 Score=156.47 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=107.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc------cccchHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE------NRGLGHAF 306 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~------~~~l~~~f 306 (423)
...+|+++|.+|||||||+++|++... ...+.+.+|........ +..+.++||||+...... ...+...+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 345899999999999999999998763 34556666655443322 457899999997542111 11122233
Q ss_pred HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHc---
Q 014494 307 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV--- 380 (423)
Q Consensus 307 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~--- 380 (423)
++....++++++|+|++.. .. .....+...+... +.|.++|+||+|+.... ...+.+.+.+
T Consensus 99 ~~~~~~~~~vi~v~d~~~~-------~~-~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIP-------PQ-DSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CC-HHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HhcCcCceEEEEEecCCCC-------CC-HHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 3444455999999998763 11 2222333334332 78999999999997543 2334444433
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
...+++++||+++.|+++++++|.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 34689999999999999999999988764
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=7.3e-19 Score=159.47 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=108.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
+|+++|.+|||||||+++|++.... .. ..|.......+.+.+..+.+|||||..+. ...+..++..+|++
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKI-------RPLWRHYFQNTQGL 100 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC------------CTTHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhH-------HHHHHHHhccCCEE
Confidence 7999999999999999999875432 11 23455556677788899999999998652 22344567899999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc---CCCcEEEEec
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVCA 390 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~---~~~~ii~vSA 390 (423)
++|+|+++. ..+.....++.++... ....+.|.++|+||+|+... +++.+.+.... ...+++++||
T Consensus 101 ilv~D~~~~-------~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA 172 (192)
T 2b6h_A 101 IFVVDSNDR-------ERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCA 172 (192)
T ss_dssp EEEEETTCG-------GGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred EEEEECCCH-------HHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcC
Confidence 999999873 4566666655555332 22347899999999999764 23222222111 2346899999
Q ss_pred ccCcCHHHHHHHHHHHhc
Q 014494 391 VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~ 408 (423)
+++.|+++++++|.+.+.
T Consensus 173 ~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 173 TQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTTBTHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHh
Confidence 999999999999988774
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=2.7e-19 Score=160.20 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=109.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++... .....|.......+.+++..+.+|||||+.+.. ..+..++..+|+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 91 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTEF 91 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGGT-------CGGGGGGTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 4899999999999999999998754 122233444456777888999999999986522 223355788999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHH-c--CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERR-V--QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~-~--~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+... +++.+.+... . .+.+++++|
T Consensus 92 ii~v~D~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 163 (181)
T 2h17_A 92 VIVVVDSTDR-------ERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 163 (181)
T ss_dssp EEEEEETTCT-------TTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHhC-hhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 9999999872 4566666666555432 11357899999999999763 2322222111 1 234789999
Q ss_pred cccCcCHHHHHHHHHHH
Q 014494 390 AVLEEGVPELKVGLRML 406 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~ 406 (423)
|+++.|+++++++|.+.
T Consensus 164 a~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 164 ALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTTBTHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHhh
Confidence 99999999999988753
No 92
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.3e-19 Score=158.47 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=111.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+++|++.. ....+..|+.+.....+.+++ ..+.+|||||+.+... ....++..+|
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d 91 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMTD 91 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCCCC
Confidence 79999999999999999999864 334555665555555666666 6789999999876332 1224567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------------HHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------------~~~~~l~ 377 (423)
++++|+|+++. .++.... .++.++..+. .+.|.++|+||+|+.... +....+.
T Consensus 92 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 92 VFLICFSVVNP-------ASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 99999999872 4455554 5666665543 378999999999997642 1222333
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+.+...+++++||+++.|+++++++|.+.+-
T Consensus 162 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 162 KEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 3333338999999999999999999987653
No 93
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=161.73 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=108.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+++ ..+.+|||||..... ..+..++..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR-------SVTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS-------CCCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH-------HHHHHHhccC
Confidence 3899999999999999999998765555555556666667777777 689999999975421 1234567889
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. ..+..+..++.++..+.. .+.|.++|+||+|+.... .....+.+.. +.+++++|
T Consensus 99 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 168 (200)
T 2o52_A 99 AGALLVYDITSR-------ETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQEN-ELMFLETS 168 (200)
T ss_dssp SEEEEEEETTCH-------HHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEEEEC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 999999999872 445555666666654322 478999999999986421 2223333333 57899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 169 A~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 169 ALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 94
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=4.1e-19 Score=170.43 Aligned_cols=159 Identities=26% Similarity=0.392 Sum_probs=120.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH-HHHH--hc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF-LRHI--ER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f-l~~i--~~ 312 (423)
.+|+|+|.+|||||||+|+|++....+++++++|.+...+.+.+.+..+.++||||+.+..... ..... ..++ ..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELIARNFILDGN 81 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHHHHHhhhccC
Confidence 3799999999999999999999988888999999999999999999999999999998633211 11111 1222 57
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHcCCCcEEEEe
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~~~~~ii~vS 389 (423)
+|++++|+|+++. .....+..++..+ ...|+++|+||+|+.... ...+.+.+.+ +.+++++|
T Consensus 82 ~d~vi~v~D~~~~----------~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~S 146 (271)
T 3k53_A 82 ADVIVDIVDSTCL----------MRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPTN 146 (271)
T ss_dssp CSEEEEEEEGGGH----------HHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEECB
T ss_pred CcEEEEEecCCcc----------hhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEEE
Confidence 9999999999861 2223333344332 238999999999976432 1244566555 57899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+++.|++++++.|.+.+....
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTCC
T ss_pred eCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 95
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.79 E-value=1.8e-18 Score=159.25 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=109.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC------------CeeEEEEcCCCCcCCccccccch
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD------------DIQITVADIPGLIKGAHENRGLG 303 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~------------~~~i~l~DtpG~i~~a~~~~~l~ 303 (423)
.+|+|+|.+|||||||+++|++........+..+.+.....+.++ ...+.+|||||..+ +.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------FR 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------HH
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-------HH
Confidence 379999999999999999999875533323333333334445444 35799999999754 44
Q ss_pred HHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHH
Q 014494 304 HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERR 379 (423)
Q Consensus 304 ~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~ 379 (423)
..+..++..+|++++|+|+++. ..+..+..++.++..+. .....|+|+|+||+|+... .+..+.+.+.
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~-------~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQ-------QSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH-------HHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred hHHHHHhcCCCEEEEEEECcCH-------HHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 4556778899999999999862 34444444443332111 1147899999999999653 2334444444
Q ss_pred cCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 380 VQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 380 ~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+ +.+++++||+++.|+++++++|.+.+.+
T Consensus 171 ~-~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 Y-GIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp T-TCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred C-CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3 5789999999999999999999887654
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=9.5e-19 Score=161.41 Aligned_cols=157 Identities=20% Similarity=0.217 Sum_probs=100.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++... ...+..|+.......+.+++ ..+.+|||||..+. ......++..+|
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~d 107 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY-------DRLRPLFYPDAS 107 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhh-------hHHHHHHhccCC
Confidence 799999999999999999998643 33444555445555566666 47899999997652 222334578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----------------HHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------YEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----------------~~~l~ 377 (423)
++++|+|+++. .++.... .|...+..+. .+.|+|+|+||+|+...... ...+.
T Consensus 108 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 108 VLLLCFDVTSP-------NSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 99999999862 4455543 4555555432 47899999999999765422 12333
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+.+...+++++||+++.|++++++.|.+.+.+.+
T Consensus 178 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 178 RSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 3333348999999999999999999988876443
No 97
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.79 E-value=1.8e-18 Score=160.83 Aligned_cols=155 Identities=20% Similarity=0.217 Sum_probs=111.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccc-eecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT-TLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft-Tl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
+|+|||.+|+|||||+++++..... ..|..| ..+.....+..++ ..+.||||+|..+... ....+++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-------l~~~~~~~a 86 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-------LIPSYIRDS 86 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCGG-------GHHHHHTTC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-------HHHHHhccc
Confidence 7999999999999999999875432 233222 2333444555555 5788999999876332 234567899
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
+++++|+|+++ ..++..+..|+..+..... .+.|+|||+||+|+... .+..+.+.+.+ +.+++.+|
T Consensus 87 ~~~ilv~di~~-------~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~S 156 (216)
T 4dkx_A 87 AAAVVVYDITN-------VNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMFIETS 156 (216)
T ss_dssp SEEEEEEETTC-------HHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEEB
T ss_pred cEEEEEeecch-------hHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCeeEEEe
Confidence 99999999997 4677888888887765532 36899999999998653 22334455544 57899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|++|.||+++++.|.+.+..
T Consensus 157 Aktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 157 AKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TTTTBSHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999887754
No 98
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=1.6e-18 Score=164.21 Aligned_cols=166 Identities=19% Similarity=0.156 Sum_probs=113.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCccc--ceecceEEEEEeCCeeEEEEcCCCCcCCcccc-ccchHHHHHHH---
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSF--TTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-RGLGHAFLRHI--- 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~f--tTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~-~~l~~~fl~~i--- 310 (423)
+|+|||.+|||||||+|+|++....+..+.+ +|..+..+.+.+++..+.++||||+....... ..+...+.+.+
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~ 102 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLS 102 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhc
Confidence 7999999999999999999999887766665 78888889999999999999999997644322 23333343443
Q ss_pred -hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh-hhcccCCCCeEEEEeCCCcCCh--HH--------HHHHHHH
Q 014494 311 -ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH-HQEGLSDRPSLVVANKIDEDGA--EE--------VYEELER 378 (423)
Q Consensus 311 -~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~-~~~~l~~~P~IiVlNKiDl~~~--~~--------~~~~l~~ 378 (423)
..+|++|+|+|++.. . ... ..++..+.. +...+...|+|+|.||+|+... ++ .++.+.+
T Consensus 103 ~~~~d~il~V~d~~~~-------~-~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 103 APGPHALLLVTQLGRF-------T-AQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp TTCCSEEEEEEETTBC-------C-HHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCC-------C-HHH-HHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 889999999999751 1 122 222333322 3344557899999999999753 11 1334444
Q ss_pred HcCCCcEEEEeccc-----CcCHHHHHHHHHHHhccccC
Q 014494 379 RVQGVPIYPVCAVL-----EEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 379 ~~~~~~ii~vSA~~-----g~gi~eL~~~i~~~l~~~~~ 412 (423)
.+ +..++.+++.. +.|+++|++.|.+++.+...
T Consensus 174 ~~-g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 174 EC-GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HT-TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred Hc-CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 44 44566666554 58999999999999986543
No 99
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.3e-18 Score=157.05 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=100.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCC--CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc------cccchHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAK--PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE------NRGLGHAF 306 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~--~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~------~~~l~~~f 306 (423)
..+|+++|.+|||||||+++|++.. ......+++|...... .+ +..+.+|||||+...... ...+...+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 4589999999999999999999875 2345566666554433 23 347999999997543211 01112222
Q ss_pred HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc---
Q 014494 307 LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV--- 380 (423)
Q Consensus 307 l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~--- 380 (423)
+.....++++++|+|+++. ...... .+...+.. ...|.++|+||+|+....+ ..+.+++.+
T Consensus 100 ~~~~~~~~~~i~v~d~~~~-------~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHA-------PSNDDV-QMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNID 166 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-------CCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC
T ss_pred HhhhhcCCEEEEEEECCCC-------CCHHHH-HHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHccc
Confidence 3333334999999999873 223222 22333322 3789999999999987542 234555533
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
...+++++||+++.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999988775
No 100
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.79 E-value=5.7e-19 Score=161.94 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=114.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+++|++... ...+..|+.+.....+.+++ ..+.+|||||+.+... ....++..+|
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 82 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGAD 82 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCCC
Confidence 799999999999999999997653 34555555555555566665 5889999999865322 1224578899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHH------------HHHHHHHHcC
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEE------------VYEELERRVQ 381 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~------------~~~~l~~~~~ 381 (423)
++++|+|+++. .++..+. .|+.++..+. .+.|.|+|+||+|+..... ....+.+.+.
T Consensus 83 ~~ilv~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 83 IFVLAFSLISK-------ASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 99999999872 4455554 5666665543 3789999999999965432 2233444443
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..+++++||+++.|+++++++|.+.+.+..
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 153 AAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 348999999999999999999998876543
No 101
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=1.5e-19 Score=186.79 Aligned_cols=164 Identities=22% Similarity=0.260 Sum_probs=98.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch-HHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~-~~fl~~i 310 (423)
+...+|+|+|+||||||||+|+|++.. ..+.++++||.+.....+.+++..+.+|||||+.+....-..++ ...+.++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 445579999999999999999999875 45788999999999999999999999999999966332111111 1224467
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH-HHHHHHHcCCCcEEEEe
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-YEELERRVQGVPIYPVC 389 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~-~~~l~~~~~~~~ii~vS 389 (423)
..+|++++|+|+++.. ...+...+...+. .+.+.|.|+|+||+|+...... .+.+.+.. ..++++||
T Consensus 311 ~~aD~vl~VvD~s~~~-------s~~~~~~~~~~l~----~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~-~~~~i~vS 378 (476)
T 3gee_A 311 AEADLILYLLDLGTER-------LDDELTEIRELKA----AHPAAKFLTVANKLDRAANADALIRAIADGT-GTEVIGIS 378 (476)
T ss_dssp SSCSEEEEEEETTTCS-------SGGGHHHHHHHHH----HCTTSEEEEEEECTTSCTTTHHHHHHHHHHH-TSCEEECB
T ss_pred ccCCEEEEEEECCCCc-------chhhhHHHHHHHH----hcCCCCEEEEEECcCCCCccchhHHHHHhcC-CCceEEEE
Confidence 8899999999998742 2221222222222 1237899999999999865432 23344431 25799999
Q ss_pred cccCcCHHHHHHHHHHHhc
Q 014494 390 AVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~ 408 (423)
|++++|+++|+++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999887
No 102
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.2e-19 Score=163.13 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=111.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|+|||||+++|++........+..+.+.....+.+++ ..+.+|||||..+.... +..++..+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI-------TSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC-------CGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh-------HHHHhccC
Confidence 3799999999999999999998766555555555666667777777 68899999998653221 22456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++. .++..+..++.++..+. ....|+++|+||+|+... .+....+.+.. +.+++++|
T Consensus 87 d~vilV~D~~~~-------~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 156 (223)
T 3cpj_B 87 VGALIVYDISKS-------SSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN-QLLFTETS 156 (223)
T ss_dssp CEEEEEEC-CCH-------HHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT-TCEEEECC
T ss_pred CEEEEEEeCCCH-------HHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHc-CCEEEEEe
Confidence 999999999872 45666666776665542 236899999999999642 12233344333 57899999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 157 a~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 157 ALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CC-CCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998877543
No 103
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=6.5e-19 Score=161.43 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=106.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+... ....++..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-------TGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcCCC
Confidence 37999999999999999999986543 3344444444444466666 5789999999865322 122356789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHH----------------H
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEE----------------L 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~----------------l 376 (423)
|++++|+|+++. .++... ..+...+..+. .+.|.++|+||+|+.......+. +
T Consensus 98 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 98 DVILMCFSVDSP-------DSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp CEEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 999999999862 344554 44555555432 37899999999999765332222 2
Q ss_pred HHHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 377 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 377 ~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
...+...+++++||+++.|+++++++|.+.+.+
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 222222379999999999999999999887654
No 104
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=7.1e-19 Score=181.19 Aligned_cols=165 Identities=20% Similarity=0.265 Sum_probs=120.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc----ccchHHHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN----RGLGHAFLR 308 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~----~~l~~~fl~ 308 (423)
...+|+++|.+|+|||||+|+|++.. ..+.+++++|.+.....+.+++..+.+|||||+.+..... .......+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 34589999999999999999999875 4578899999999999999999999999999987643221 111223456
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHc---
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRV--- 380 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~--- 380 (423)
+++.||++++|+|++... ..+...+...+.. ..+|.|+|+||+|+... ++..+.+.+.+
T Consensus 274 ~~~~ad~~llviD~~~~~--------~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGI--------IEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHCSEEEEEEETTTCC--------CHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCCc--------CHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 789999999999998732 2334444444433 36899999999999753 33445555554
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
...++++|||++|.|+++|++.|.+.+..+.
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999998876543
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=2.5e-19 Score=159.80 Aligned_cols=156 Identities=23% Similarity=0.256 Sum_probs=107.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++... .. ...|.......+.+++..+.+|||||+.+... .+..++..+|+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~--~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 88 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEV--VT-TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-------YWRCYYADTAA 88 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEE--EE-ECSSTTCCEEEEEETTEEEEEEEEC----CCT-------TGGGTTTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCc--Cc-cCCcCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCCE
Confidence 3899999999999999999986543 11 12234455567778889999999999865322 22345678999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc---CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~---~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+... +++.+.+.... ...+++++|
T Consensus 89 ii~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 89 VIFVVDSTDK-------DRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp EEEEEETTCT-------TTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred EEEEEECCCH-------HHHHHHHHHHHHHHcC-hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 9999999872 4566666655554322 11357899999999999754 22222221110 134789999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 161 a~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 106
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.5e-18 Score=154.90 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=112.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||+.+ ...+..++..+|
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~d 100 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED--------TIQREGHMRWGE 100 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC--------CHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc--------ccchhhhhccCC
Confidence 7999999999999999999986543 3344443333344455665 5789999999865 123456678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. .++..+..++.++..+. .....|.++|+||+|+... .+....+.+.+ +.+++++||
T Consensus 101 ~iilv~D~~~~-------~s~~~~~~~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa 171 (196)
T 2atv_A 101 GFVLVYDITDR-------GSFEEVLPLKNILDEIK-KPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYECSA 171 (196)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHH-TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEECCT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHhh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEECC
Confidence 99999999872 45566666666665542 2247899999999999653 12233344333 568999999
Q ss_pred ccCc-CHHHHHHHHHHHhccc
Q 014494 391 VLEE-GVPELKVGLRMLVNGE 410 (423)
Q Consensus 391 ~~g~-gi~eL~~~i~~~l~~~ 410 (423)
+++. |+++++++|.+.+.+.
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHhh
Confidence 9999 9999999998877543
No 107
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=3.3e-19 Score=158.72 Aligned_cols=156 Identities=18% Similarity=0.167 Sum_probs=100.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..+|+++|.+|+|||||++++++... ...+..|+.+.....+.+++ ..+.+|||||..+... ....++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-------LRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTTT-------TGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhccC
Confidence 34899999999999999999997643 33444443322222222333 5677999999865322 22345678
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH--------------HHHHH
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV--------------YEELE 377 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~--------------~~~l~ 377 (423)
+|++++|+|+++. .++.... .+...+..+. .+.|.++|+||+|+...... ...+.
T Consensus 80 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 80 ADVFILAFSLISK-------ASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp CSEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred CCEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 9999999999862 4455554 4666665543 37899999999998654331 23344
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+.+...+++++||+++.|++++++.|.+.+.
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4443348999999999999999999987764
No 108
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.78 E-value=6.5e-19 Score=161.31 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=109.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||++++++... ...+..++.+.....+.+++ ..+.+|||||+.+.. ..+..++..+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 102 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQT 102 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 3899999999999999999997533 34555566555555666666 456699999986522 2223456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHH
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EEL 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l 376 (423)
|++++|+|+++. .++.... .+...+..+. .+.|.|+|+||+|+....... ..+
T Consensus 103 d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 4gzl_A 103 DVFLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence 999999999872 4455554 4555555443 478999999999997654322 223
Q ss_pred HHHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 377 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 377 ~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
.+.+...++++|||+++.|+++++++|.+.+
T Consensus 173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 3333345699999999999999999998754
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=160.85 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=110.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+.... ...++..+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 96 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-------PYSFIIGV 96 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------CGGGTTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------HHHHHhcC
Confidence 48999999999999999999987544 3444444333344444433 67899999997653321 22456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++.++..+. ...+.|+|+|+||+|+.... .....+...+ +.+++++|
T Consensus 97 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~S 167 (201)
T 3oes_A 97 HGYVLVYSVTS-------LHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW-GATFMESS 167 (201)
T ss_dssp CEEEEEEETTC-------HHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEECC
T ss_pred CEEEEEEeCCC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCccccccCHHHHHHHHHHh-CCeEEEEe
Confidence 99999999987 245666666666664431 12368999999999986432 2233444444 56899999
Q ss_pred cccCcCHHHHHHHHHHHhccccC
Q 014494 390 AVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
|+++.|+++++++|.+.+.+...
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999988865543
No 110
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=4.2e-19 Score=173.22 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=115.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCc-CCccccccchHHH----HHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLI-KGAHENRGLGHAF----LRHI 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i-~~a~~~~~l~~~f----l~~i 310 (423)
.|+|||+||||||||+|+|++.+.. +++.+.+|.+...+.+..++.++.++||||+. .... .+...| ...+
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~l~~~~~~~~~~~l 86 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---AINRLMNKAASSSI 86 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---HHHHHHTCCTTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---hHHHHHHHHHHHHH
Confidence 7999999999999999999998654 46778888888888888888999999999986 2111 122222 3446
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC-hHHHHHHHHHHc---CCCcEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG-AEEVYEELERRV---QGVPIY 386 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~-~~~~~~~l~~~~---~~~~ii 386 (423)
..+|++++|+|+++ . ... ...+...+.. .+.|.|+|+||+|+.. .....+.+.+.. ....++
T Consensus 87 ~~~D~vl~Vvd~~~-~------~~~--~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 87 GDVELVIFVVEGTR-W------TPD--DEMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp CCEEEEEEEEETTC-C------CHH--HHHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred hcCCEEEEEEeCCC-C------CHH--HHHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE
Confidence 77899999999875 2 111 1233333321 3789999999999987 444444444332 223689
Q ss_pred EEecccCcCHHHHHHHHHHHhccc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
++||+++.|+++|++.|...+.+.
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred EEECCCCCCHHHHHHHHHHhCCcC
Confidence 999999999999999999887654
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=1.9e-18 Score=157.57 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=108.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|+|||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+... .+..++..+|
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d 98 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDTD 98 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------HHHHhcCCCC
Confidence 7999999999999999999986543 3333344333444566666 5789999999765221 1223567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l~ 377 (423)
++++|+|+++. .++... ..+...+..+. .+.|.++|+||+|+....... ..+.
T Consensus 99 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 99 VILMCFSIDSP-------DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 99999999862 345554 44555554432 378999999999997653221 2222
Q ss_pred HHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 378 RRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+.+...+++++||+++.|+++++++|.+.+-
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 169 NRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 3333337999999999999999999987653
No 112
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=8.4e-19 Score=157.82 Aligned_cols=160 Identities=19% Similarity=0.135 Sum_probs=104.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccc------eecceEEEE-------EeCC--eeEEEEcCCCCcCCcccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFT------TLRPNLGNM-------NFDD--IQITVADIPGLIKGAHENRG 301 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ft------Tl~~~~g~v-------~~~~--~~i~l~DtpG~i~~a~~~~~ 301 (423)
+|+|+|.+|||||||++.|.+..... +..+ ...++.+.- .+++ ..+.+|||||..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 86 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG--RKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF------- 86 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG--GBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS-------
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH-------
Confidence 79999999999999999998864322 1111 012232221 1122 5789999999865
Q ss_pred chHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHH
Q 014494 302 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERR 379 (423)
Q Consensus 302 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~ 379 (423)
+...+..++..+|++++|+|+++... ......+..+...+..+.....+.|.++|+||+|+.... +....+.+.
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~----~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRL----RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP 162 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGH----HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchh----hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHh
Confidence 33445567889999999999985200 001223333333333333344689999999999997541 222223322
Q ss_pred cCCC-cEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 380 VQGV-PIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 380 ~~~~-~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
. +. +++++||+++.|+++++++|.+.+.+.
T Consensus 163 ~-~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 E-GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp T-CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred c-CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 2 45 899999999999999999998877543
No 113
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.78 E-value=5.3e-18 Score=152.82 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=111.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||++++++..... .+..| .......+.+++ ..+.+|||+|... + .++..+|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~-----~~~~~~~ 87 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQ-EESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE-------L-----QFAAWVD 87 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCC-CCCTT-CEEEEEEEEETTEEEEEEEEECSSSCC-------H-----HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CcCCC-cceEEEEEEECCEEEEEEEEECCCChh-------h-----heecCCC
Confidence 79999999999999999998864432 22222 333345677777 5677899999865 1 1667899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC------hHHHHHHHHHHcCCCcEEEE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG------AEEVYEELERRVQGVPIYPV 388 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~------~~~~~~~l~~~~~~~~ii~v 388 (423)
++++|+|+++ ..++..+..|+.++..+. .....|+++|+||+|+.. ..+....+.+.+...+++++
T Consensus 88 ~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 88 AVVFVFSLED-------EISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEEECcC-------HHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 9999999987 355666667777775542 124689999999999842 12334455555545789999
Q ss_pred ecccCcCHHHHHHHHHHHhccc
Q 014494 389 CAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~ 410 (423)
||+++.|+++++++|.+.+.+.
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 114
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.78 E-value=4.8e-19 Score=159.36 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=111.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+++|.+|||||||+++|++.... . + ..|.......+.+++..+.+|||||+.+.... +..++..+|+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~-~-~-~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d~ 92 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVV-T-T-VPTVGVNLETLQYKNISFEVWDLGGQTGVRPY-------WRCYFSDTDA 92 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCE-E-E-CSSTTCCEEEEEETTEEEEEEEECCSSSSCCC-------CSSSSTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-C-c-CCCCceEEEEEEECCEEEEEEECCCCHhHHHH-------HHHHhhcCCE
Confidence 37999999999999999999865432 1 1 12444556677888899999999998653332 1234578999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc---CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV---QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~---~~~~ii~vS 389 (423)
+++|+|+++. .++.....++.++... ....+.|.++|+||+|+... +++.+.+.... .+.+++++|
T Consensus 93 ii~v~d~~~~-------~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 93 VIYVVDSTDR-------DRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp EEEEEETTCC-------TTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred EEEEEeCCCH-------HHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 9999999873 4556555555444321 12347899999999999764 33333222111 234799999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.|+++++++|.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999887654
No 115
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.1e-18 Score=178.70 Aligned_cols=163 Identities=20% Similarity=0.254 Sum_probs=115.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch----HHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG----HAFLRH 309 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~----~~fl~~ 309 (423)
..+|++||.+|+|||||+|+|++.... +.++++||.+.....+.+++..+.+|||||+.+.......+. ...+.+
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 358999999999999999999998654 788999999998889999999999999999865433211111 122467
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-----HHHHHHHHHHc---C
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-----EEVYEELERRV---Q 381 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-----~~~~~~l~~~~---~ 381 (423)
++.+|++++|+|+++. ...... .+...+.. ..+|.|+|+||+|+... ++..+.+.+.+ .
T Consensus 255 ~~~ad~~llv~D~~~~-------~s~~~~-~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEG-------IIEQDK-RIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHCSEEEEEEETTTC-------CCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred HHhCCEEEEEEcCCcC-------CcHHHH-HHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence 8899999999999873 233332 34444432 37899999999999753 23444555544 4
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
..+++++||++|.|++++++.+.+.+..+
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999998877653
No 116
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=6.4e-19 Score=162.33 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=106.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceE-EEEEeCC---eeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNL-GNMNFDD---IQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~-g~v~~~~---~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
+|+|+|.+|||||||+++|++.... ..+..++..... ..+...+ ..+.+|||||+..... + ...++..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~ 84 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----L---KDVYYIG 84 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----C---CHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----H---HHHHhhc
Confidence 7999999999999999999976543 222222211111 2222222 5799999999765322 1 2345678
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH-HHHHHHc--CCCcEEEEe
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY-EELERRV--QGVPIYPVC 389 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~-~~l~~~~--~~~~ii~vS 389 (423)
+|++++|+|+++. .++..+..++.++..+.. ...|+++|+||+|+....... +.+.... .+.++++||
T Consensus 85 ~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 85 ASGAILFFDVTSR-------ITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp CSEEEEEEETTCH-------HHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred CCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999872 455556666666655432 358999999999997653221 2222222 357899999
Q ss_pred cccCcCHHHHHHHHHHHhcccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~~ 411 (423)
|+++.|+++++++|.+.+.+..
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCCT
T ss_pred cCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999887654
No 117
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.3e-18 Score=180.81 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=117.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+|||.+|||||||+++|++... + ..++|+......+.+.+..+.+|||||.... ...+..+++.+|+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~-~--~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS-V--TTIPTVGFNVETVTYKNVKFNVWDVGGQDKI-------RPLWRHYYTGTQG 392 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-C--CCCCCSSEEEEEEESSSCEEEEEEECCCGGG-------SGGGGGGGTTCCE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccceeEEEEEeCCEEEEEEECCCcHHH-------HHHHHHHhccCCE
Confidence 4799999999999999999998762 2 2345788888889998899999999997652 2234567889999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-------CCCcEEEE
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV-------QGVPIYPV 388 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~-------~~~~ii~v 388 (423)
+|+|+|+++. ..+.....++.++... ....+.|+|||+||+|+..... .+.+.+.+ ...++++|
T Consensus 393 ~i~V~D~~~~-------~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 463 (497)
T 3lvq_E 393 LIFVVDCADR-------DRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPS 463 (497)
T ss_dssp EEEEEETTCG-------GGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEEC
T ss_pred EEEEEECcch-------hHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEE
Confidence 9999999872 5566666666655332 2345799999999999975421 12222222 23469999
Q ss_pred ecccCcCHHHHHHHHHHHhccccCC
Q 014494 389 CAVLEEGVPELKVGLRMLVNGEKSE 413 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~~~~~ 413 (423)
||++|+||++++++|.+.+.+....
T Consensus 464 SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 464 CATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp BTTTTBTHHHHHHHHHHHCC-----
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998766544
No 118
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.77 E-value=6.9e-18 Score=152.22 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=110.3
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++.. ....+..|+.......+.+++ ..+.+|||||...... + ..++..+|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~~~~~ 93 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYLNWAH 93 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHHTTCS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHHhhCC
Confidence 79999999999999999999865 334555555444334455555 5788999999865321 2 24678899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhc-ccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQE-GLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~-~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
++++|+|+++ ..++.....++.++..+.. .....|+|+|+||+|+... .+....+.+.+ +.++++||
T Consensus 94 ~~ilv~d~~~-------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~S 165 (187)
T 3c5c_A 94 AFLVVYSVDS-------RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLFFEVS 165 (187)
T ss_dssp EEEEEEETTC-------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEECC
T ss_pred EEEEEEECCC-------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcEEEEe
Confidence 9999999986 2566666677776655421 1247899999999999642 12233344443 56899999
Q ss_pred c-ccCcCHHHHHHHHHHHhc
Q 014494 390 A-VLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 390 A-~~g~gi~eL~~~i~~~l~ 408 (423)
| +++.|++++++.|.+.+.
T Consensus 166 a~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHHHh
Confidence 9 899999999999988764
No 119
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=4.5e-18 Score=174.33 Aligned_cols=163 Identities=22% Similarity=0.235 Sum_probs=113.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc-----ccchHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN-----RGLGHAFLR 308 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~-----~~l~~~fl~ 308 (423)
..+|+|||.||||||||+|+|++... .+++++++|.++..+.+.+++..+.++||||+.+..... .........
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 35899999999999999999999864 478999999999999999999999999999985432211 001123356
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-----HHHHHHHHHc---
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-----EVYEELERRV--- 380 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-----~~~~~l~~~~--- 380 (423)
+++.+|++++|+|++.. ..... ..+...+.. ..+|.++|+||+|+...+ +..+.+.+.+
T Consensus 260 ~i~~ad~vllv~d~~~~-------~~~~~-~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
T 1mky_A 260 SIEKADVVVIVLDATQG-------ITRQD-QRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFI 326 (439)
T ss_dssp HHHHCSEEEEEEETTTC-------CCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGG
T ss_pred HHhhCCEEEEEEeCCCC-------CCHHH-HHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccC
Confidence 78899999999999863 22222 223333322 378999999999997532 2333444433
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
...+++++||++|.|+++|++.+.+.+.++
T Consensus 327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 327 DYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 456899999999999999999998887654
No 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.76 E-value=8.1e-19 Score=159.58 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=83.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccce-ecceEEEEEeCC----eeEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTT-LRPNLGNMNFDD----IQITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftT-l~~~~g~v~~~~----~~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
+|+|+|.+|||||||+++|++.... ...+..|+ .+.....+.+++ ..+.+|||||+.. +...+..++
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~ 94 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL-------YKEQISQYW 94 (208)
T ss_dssp EEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH-------HHHHHSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH-------HHHHHHHHH
Confidence 7999999999999999999986322 33444444 356667777774 5799999999854 233344567
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcc-cCCCCeEEEEeCCCcCC-hH----HHHHHHHHHcCCCc
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEG-LSDRPSLVVANKIDEDG-AE----EVYEELERRVQGVP 384 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~-l~~~P~IiVlNKiDl~~-~~----~~~~~l~~~~~~~~ 384 (423)
..+|++++|+|+++. .++.....++.++..+... ....|+++|+||+|+.. .. +....+.+.+ +.+
T Consensus 95 ~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~~~ 166 (208)
T 2yc2_C 95 NGVYYAILVFDVSSM-------ESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN-TLD 166 (208)
T ss_dssp CCCCEEEEEEETTCH-------HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT-TCE
T ss_pred hhCcEEEEEEECCCH-------HHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc-CCE
Confidence 789999999999872 4566666777766554220 24789999999999976 21 2233444443 578
Q ss_pred EEEEeccc-CcCHHHHHHHHHHHhcc
Q 014494 385 IYPVCAVL-EEGVPELKVGLRMLVNG 409 (423)
Q Consensus 385 ii~vSA~~-g~gi~eL~~~i~~~l~~ 409 (423)
++++||++ +.|+++++++|.+.+.+
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp EEECCC-------CHHHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999 99999999999887654
No 121
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=2.7e-18 Score=154.10 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=106.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||...... + ...++..+|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~~ 80 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPDSD 80 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT----T---GGGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh----h---HHhhcCCCc
Confidence 7999999999999999999986432 3333333333334455554 6789999999865221 1 123467899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------------HHHHHHHH
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEELE 377 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------------~~~~~~l~ 377 (423)
++++|+|+++. .++..+ ..|..++..+. .+.|+|+|+||+|+... .+....+.
T Consensus 81 ~~i~v~d~~~~-------~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 81 AVLICFDISRP-------ETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp EEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence 99999999872 445554 45556665543 37899999999999742 12233344
Q ss_pred HHcCCCcEEEEecc-cCcCHHHHHHHHHHHh
Q 014494 378 RRVQGVPIYPVCAV-LEEGVPELKVGLRMLV 407 (423)
Q Consensus 378 ~~~~~~~ii~vSA~-~g~gi~eL~~~i~~~l 407 (423)
+.+...+++++||+ ++.|++++++.|.+.+
T Consensus 151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 151 KQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 44434689999999 6899999999998765
No 122
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.76 E-value=4e-18 Score=157.48 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=110.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||..+... ....++..+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 99 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSDS 99 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCCC
Confidence 38999999999999999999986543 3444443333334444444 6789999999865322 122356789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHH-HHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----------------HHHHHHH
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQ-LRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----------------EEVYEEL 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~-~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----------------~~~~~~l 376 (423)
|++++|+|+++ ..++.. +..|+.++..+. .+.|+++|+||+|+... .+....+
T Consensus 100 d~~i~v~d~~~-------~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 100 DAVLLCFDISR-------PETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp SEEEEEEETTC-------THHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred eEEEEEEECcC-------HHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 99999999987 355665 566777776553 37899999999999642 1223344
Q ss_pred HHHcCCC-cEEEEecccCcC-HHHHHHHHHHHhcccc
Q 014494 377 ERRVQGV-PIYPVCAVLEEG-VPELKVGLRMLVNGEK 411 (423)
Q Consensus 377 ~~~~~~~-~ii~vSA~~g~g-i~eL~~~i~~~l~~~~ 411 (423)
.+.+ +. ++++|||+++.| ++++++.|.+.+....
T Consensus 170 ~~~~-~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 170 AKQL-GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHH-TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHc-CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 4444 44 899999999998 9999999998876543
No 123
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.76 E-value=2.8e-20 Score=169.37 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=112.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|||||||+++|++........+.++.+.....+.+++ ..+.+|||||....... +..++..+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI-------TSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC-------SCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH-------HHHHhhcC
Confidence 3799999999999999999998766666667777777788888887 57999999997653322 22456789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~vS 389 (423)
|++++|+|+++ ..++..+..++..+..+.. .+.|.|+|+||+|+.... +....+.+.+ +.+++++|
T Consensus 107 d~~i~v~d~~~-------~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vS 176 (199)
T 3l0i_B 107 HGIIVVYDVTD-------QESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLETS 176 (199)
T ss_dssp SEEEECC-CCC-------SHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCCCC
T ss_pred CEEEEEEECCC-------HHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEEEE
Confidence 99999999987 3566677777776654422 368999999999986432 1123344433 56899999
Q ss_pred cccCcCHHHHHHHHHHHhcc
Q 014494 390 AVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~ 409 (423)
|+++.|+++++++|.+.+.+
T Consensus 177 A~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 177 AKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp C---HHHHHHHHHHTTTTTT
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654
No 124
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=6.7e-18 Score=155.02 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=101.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeC---CeeEEEEcCCCCcCCccccccchH-HHHHHHh
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFD---DIQITVADIPGLIKGAHENRGLGH-AFLRHIE 311 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~---~~~i~l~DtpG~i~~a~~~~~l~~-~fl~~i~ 311 (423)
.+|+++|.+|+|||||+++|++.. ....++.++ .....+.++ +..+.+|||||+.+ +.. .+..++.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~ 77 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQLLDRFKS 77 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-------HHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCcc--eeeEEEEecCCCccEEEEEECCCChh-------HHHHHHHHHHh
Confidence 489999999999999999999865 344455433 333446666 46899999999865 333 2334578
Q ss_pred ccceeEEEEecCCCCCCCCCCCcHHHHHH-HHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHc-------
Q 014494 312 RTKVLAYVVDLASGLDGRKGIKPWKQLRD-LIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRV------- 380 (423)
Q Consensus 312 ~ad~ll~VvD~s~~~~~~~~~~~~~~~~~-l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~------- 380 (423)
.++++++|+|+++. ......... +...+......-...|.++|+||+|+... ....+.+.+.+
T Consensus 78 ~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 151 (214)
T 2fh5_B 78 SARAVVFVVDSAAF------QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151 (214)
T ss_dssp GEEEEEEEEETTTH------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred hCCEEEEEEECCCc------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccc
Confidence 89999999999751 011222222 22222221111236899999999999753 22333332211
Q ss_pred -----------------C-------------CCcEEEEecccC------cCHHHHHHHHHHHh
Q 014494 381 -----------------Q-------------GVPIYPVCAVLE------EGVPELKVGLRMLV 407 (423)
Q Consensus 381 -----------------~-------------~~~ii~vSA~~g------~gi~eL~~~i~~~l 407 (423)
. ..+++++||+++ .||++++++|.+.+
T Consensus 152 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 152 SAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp C------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred hhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1 456899999999 99999999998753
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=8.1e-19 Score=179.74 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=101.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~a 313 (423)
++|+|||.||+|||||+|+|++.+.. +.+++++|.+...+.+.+.+..+.+|||||+...... ...+......+++.|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987654 6889999999999988888899999999999642211 112344456678999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccC
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLE 393 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g 393 (423)
|++++|+|++... . ... ..+...+.. .++|.++|+||+|+.........+.+. .-.++++|||++|
T Consensus 84 d~il~vvD~~~~~------~-~~d-~~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~~~~~~l-g~~~~~~iSA~~g 149 (436)
T 2hjg_A 84 DVIIFMVNGREGV------T-AAD-EEVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSL-GFGEPYPISGTHG 149 (436)
T ss_dssp SEEEEEEETTTCS------C-HHH-HHHHHHHTT-----CCSCEEEEEECCCC-----CCCSSGGG-SSCCCEECBTTTT
T ss_pred CEEEEEEeCCCCC------C-HHH-HHHHHHHHH-----cCCCEEEEEECccCccchhhHHHHHHc-CCCCeEEEeCcCC
Confidence 9999999998732 2 221 223232321 478999999999987543211111111 1237899999999
Q ss_pred cCHHHHHHHHHHHhccc
Q 014494 394 EGVPELKVGLRMLVNGE 410 (423)
Q Consensus 394 ~gi~eL~~~i~~~l~~~ 410 (423)
.|+++|+++|.+.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp BTHHHHHHHHHHTGGGC
T ss_pred CChHHHHHHHHHhcCcc
Confidence 99999999999988753
No 126
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=3.6e-19 Score=183.29 Aligned_cols=163 Identities=23% Similarity=0.287 Sum_probs=111.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccch-HHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLG-HAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~-~~fl~~i 310 (423)
+...+|+|+|+||||||||+|+|++... .+.++++||.+.....+.+++..+.+|||||+.+....-..++ ...+..+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4455799999999999999999998743 4788899999998888899999999999999865322111111 1223456
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEec
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA 390 (423)
..+|++++|+|+++. ... ....++..+ ..+|.|+|+||+|+....... .+.+.....++++|||
T Consensus 302 ~~aD~vl~VvD~s~~-------~~~-~~~~i~~~l-------~~~piivV~NK~Dl~~~~~~~-~~~~~~~~~~~i~iSA 365 (462)
T 3geh_A 302 NTADLVLLTIDAATG-------WTT-GDQEIYEQV-------KHRPLILVMNKIDLVEKQLIT-SLEYPENITQIVHTAA 365 (462)
T ss_dssp CSCSEEEEEEETTTC-------SCH-HHHHHHHHH-------TTSCEEEEEECTTSSCGGGST-TCCCCTTCCCEEEEBT
T ss_pred hcCCEEEEEeccCCC-------CCH-HHHHHHHhc-------cCCcEEEEEECCCCCcchhhH-HHHHhccCCcEEEEEC
Confidence 789999999999873 122 223333333 257999999999998654321 1111113568999999
Q ss_pred ccCcCHHHHHHHHHHHhcccc
Q 014494 391 VLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+++.|+++|++.|.+.+....
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999887543
No 127
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.75 E-value=3.7e-18 Score=156.85 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=107.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.+++ ..+.+|||||...... + ...++..+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT----T---GGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH----H---HHhhccCC
Confidence 37999999999999999999986543 3333333333334455554 6789999999865322 1 12346789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHH-HHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----------------HHHHHH
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQL-RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----------------EVYEEL 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----------------~~~~~l 376 (423)
|++++|+|+++. .++..+ ..|..++..+. .+.|+|+|+||+|+.... +....+
T Consensus 101 d~~ilv~D~~~~-------~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 101 DAVLICFDISRP-------ETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp SEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred CEEEEEEECCCH-------HHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 999999999872 445555 45656665543 378999999999997421 223344
Q ss_pred HHHcCCCcEEEEecc-cCcCHHHHHHHHHHHh
Q 014494 377 ERRVQGVPIYPVCAV-LEEGVPELKVGLRMLV 407 (423)
Q Consensus 377 ~~~~~~~~ii~vSA~-~g~gi~eL~~~i~~~l 407 (423)
.+.+...++++|||+ ++.|++++++.|.+.+
T Consensus 171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 171 AKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 444434689999999 6899999999988765
No 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=166.33 Aligned_cols=157 Identities=25% Similarity=0.282 Sum_probs=111.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
.+|+|+|.+|+|||||+++|++... +..+ .|.......+...+..+.||||||.... ...+..++..+|+
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ad~ 235 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQG 235 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEETTEEEEEEECC------------CCSHHHHHTTEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecCcEEEEEEECCCCHhH-------HHHHHHHhccCCE
Confidence 3799999999999999999988653 2333 3666677778888899999999997552 2224456788999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---HHHHHHHHHc---CCCcEEEEe
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---EVYEELERRV---QGVPIYPVC 389 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---~~~~~l~~~~---~~~~ii~vS 389 (423)
+|+|+|+++ ..++.....++.++... ....+.|+|+|+||+|+.... ++...+.... .+.++++||
T Consensus 236 vilV~D~~~-------~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS 307 (329)
T 3o47_A 236 LIFVVDSND-------RERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 307 (329)
T ss_dssp EEEEEETTC-------SSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred EEEEEECCc-------hHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence 999999987 35566666555554322 223578999999999997642 2222222111 234699999
Q ss_pred cccCcCHHHHHHHHHHHhccc
Q 014494 390 AVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l~~~ 410 (423)
|+++.||++|++.|.+.+.+.
T Consensus 308 Ak~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 308 ATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp TTTTBTHHHHHHHHHHHHTC-
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999887643
No 129
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.75 E-value=1.4e-17 Score=149.23 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=103.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc----ccchHHHHHH--
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN----RGLGHAFLRH-- 309 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~----~~l~~~fl~~-- 309 (423)
.+|+++|.+|||||||+++|++........+++|..+... .+. .+.++||||+....... ..+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999877777777776655433 333 78999999964321100 0111122223
Q ss_pred --HhccceeEEEEecCCCCCCCCCCCcHHHH-HHHHHH--------HHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHH
Q 014494 310 --IERTKVLAYVVDLASGLDGRKGIKPWKQL-RDLIIE--------LEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELE 377 (423)
Q Consensus 310 --i~~ad~ll~VvD~s~~~~~~~~~~~~~~~-~~l~~e--------L~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~ 377 (423)
...++++++|+|.++ .... ..+... +..+. .....|.++|+||+|+.... +..+.+.
T Consensus 78 ~~~~~~~~v~~v~d~~s----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKA----------APEIIKRWEKRGEIPIDVEFYQFL-RELDIPTIVAVNKLDKIKNVQEVINFLA 146 (190)
T ss_dssp HHGGGCCEEEEEEETTH----------HHHHHHHHHHTTCCCHHHHHHHHH-HHTTCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred hhhccCCEEEEEEcchh----------hhhHHHhhhccCccHHHHHHHHHH-HhcCCceEEEeehHhccCcHHHHHHHHH
Confidence 334456666666543 2222 222211 11111 11378999999999998753 3455555
Q ss_pred HHcCC------CcEEEEecccCcCHHHHHHHHHHHhccccC
Q 014494 378 RRVQG------VPIYPVCAVLEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 378 ~~~~~------~~ii~vSA~~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+.+.. .+++++||+++.|+++++++|.+.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 147 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 55522 247999999999999999999988866543
No 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=155.97 Aligned_cols=164 Identities=17% Similarity=0.165 Sum_probs=107.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcc--cceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHH---
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYS--FTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHI--- 310 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~--ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i--- 310 (423)
.+|+|||.+|||||||+|+|++.......++ ++|..+....+.+++..+.+|||||+.........+...+.+.+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 109 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLT 109 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhc
Confidence 3899999999999999999999888777776 78888888899999999999999999875543333333444443
Q ss_pred -hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHH-hhhcccCCCCeEEEEeCCCcCChHH----------HHHHHHH
Q 014494 311 -ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE-HHQEGLSDRPSLVVANKIDEDGAEE----------VYEELER 378 (423)
Q Consensus 311 -~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~-~~~~~l~~~P~IiVlNKiDl~~~~~----------~~~~l~~ 378 (423)
..++++|+|+|++.. .. .... ++..+. .+... ..+|.|+|+||+|+..... .++.+.+
T Consensus 110 ~~~~~~~l~v~d~~~~-------~~-~~~~-~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRY-------TE-EEHK-ATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp TTCCSEEEEEEETTCC-------SS-HHHH-HHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred CCCCcEEEEEeeCCCC-------CH-HHHH-HHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 456999999998752 12 2222 222222 12111 2469999999999875432 2333444
Q ss_pred HcCCCcEEEEecccC-----cCHHHHHHHHHHHhccc
Q 014494 379 RVQGVPIYPVCAVLE-----EGVPELKVGLRMLVNGE 410 (423)
Q Consensus 379 ~~~~~~ii~vSA~~g-----~gi~eL~~~i~~~l~~~ 410 (423)
.+ +..++++++..+ .++.+|+..+.+++.+.
T Consensus 180 ~~-~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 180 IF-GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HH-SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hc-CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 44 346777776643 68999999999888654
No 131
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=2e-17 Score=161.80 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=114.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcC-CCCCCCcccceecceEEEEEe-CCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA-KPAVGHYSFTTLRPNLGNMNF-DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~-~~~i~~~~ftTl~~~~g~v~~-~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|.+|||||||+++|++. .+.+.+++.+|.+...+.+.+ ++..+.+|||||....... .+.......+..+|
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN--YFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH--HHTTTHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh--hhhhHHHHHhccCC
Confidence 7999999999999999998876 355677899999999888887 4588999999998652100 00122345567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH----------HHHHHHHHcC--C
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE----------VYEELERRVQ--G 382 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----------~~~~l~~~~~--~ 382 (423)
++++|+|+++ ..++..+..+...+..+.....+.|.++|+||+|+...+. ..+.+.+.+. .
T Consensus 83 ~vi~V~D~t~-------~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 83 VLIHVFDVES-------TEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp EEEEEEETTC-------SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEEECCC-------hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999987 3566666665554444332234799999999999987321 1222333332 3
Q ss_pred CcEEEEecccCcCHHHHHHHHHHH
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+++++||++ .++.+++..+...
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHH
Confidence 7899999999 7788777666543
No 132
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.1e-17 Score=152.97 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=108.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHH--HH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLR--HI 310 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~--~i 310 (423)
.+|+|||.+|||||||++++++.... ...++.++.+.....+.+++ ..+.+|||+|... . ..++. ++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~-------~-~~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG-------E-NEWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH-------H-HHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc-------h-hhhHHHHHH
Confidence 37999999999999999999975432 34555555555566677777 4578899999643 1 12222 24
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEE
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIY 386 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii 386 (423)
..++++++|+|+++ ..++.....+..++.... ...+.|+|+|+||+|+.... +....+...+ +.+++
T Consensus 110 ~~a~~~ilVydvt~-------~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~-~~~~~ 180 (211)
T 2g3y_A 110 QVGDAYLIVYSITD-------RASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-DCKFI 180 (211)
T ss_dssp CCCSEEEEEEETTC-------HHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEE
T ss_pred hhCCEEEEEEECCC-------HHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc-CCEEE
Confidence 56799999999987 356666666666664431 12368999999999986421 2222333333 46899
Q ss_pred EEecccCcCHHHHHHHHHHHhcc
Q 014494 387 PVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 387 ~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+|||++|.||+++++.|.+.+..
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887753
No 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.74 E-value=5.8e-17 Score=147.10 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=107.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCe--eEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~--~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
.+|+|||.+|||||||++++++... ....++.++.+.....+.+++. .+.++||+|.... ...+.. .++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~~~~~~---~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---NEWLHD---HCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGG---GHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---hhhHHH---hhccc
Confidence 3799999999999999999997433 3445565655655666777774 5678999996431 111221 24566
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHHcCCCcEEEE
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERRVQGVPIYPV 388 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~~~~~~ii~v 388 (423)
++++++|+|+++ ..++.....+...+..+. ...+.|+|+|.||+|+.... +....+...+ +.+++++
T Consensus 81 ~~~~i~v~dv~~-------~~s~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~-~~~~~e~ 151 (192)
T 2cjw_A 81 GDAYLIVYSITD-------RASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF-DXKFIET 151 (192)
T ss_dssp CSEEEEEEETTC-------HHHHHHHHHHHHHHHHHT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEEC
T ss_pred CCEEEEEEECCC-------HHHHHHHHHHHHHHHHhh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHh-CCceEEe
Confidence 899999999987 355666666666554432 12368999999999986421 1122333333 5689999
Q ss_pred ecccCcCHHHHHHHHHHHhcc
Q 014494 389 CAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 389 SA~~g~gi~eL~~~i~~~l~~ 409 (423)
||++|.||+++++.|.+.+..
T Consensus 152 SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHh
Confidence 999999999999999887743
No 134
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=6.7e-17 Score=146.66 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=101.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEE--Ee---CCeeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNM--NF---DDIQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v--~~---~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
..+|+++|.+|||||||++++++..... +..+..+....+ .+ ....+.+|||||....... ......+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP----TFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT----TCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh----hhhcccc
Confidence 4589999999999999999999852221 222222222222 22 2378999999998653221 1000356
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-------H----HHHHHH
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-------V----YEELER 378 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-------~----~~~l~~ 378 (423)
+..+|++++|+|+++. ..+.+..+...+........+.|+++|+||+|+...+. + .+.+.+
T Consensus 93 ~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp HHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 7889999999999872 23444444443333222234789999999999876421 1 122232
Q ss_pred H---cCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 379 R---VQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 379 ~---~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
. ..+.+++++||++ .|+++++..|.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 1 1245799999999 99999999988754
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.73 E-value=3.2e-17 Score=169.91 Aligned_cols=153 Identities=25% Similarity=0.324 Sum_probs=107.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC-------CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK-------PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLR 308 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~-------~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~ 308 (423)
.+|+++|++|+|||||+++|++.. ......+++|.+.....+.+++..+.++||||+.+ +...+..
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHHH
Confidence 379999999999999999999875 22344556777777777888889999999999854 5566777
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc-----
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV----- 380 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~----- 380 (423)
.+..+|++++|+|+++.. ..+....+..+.. ...|.|+|+||+|+.+.+. ..+.+.+.+
T Consensus 93 ~~~~aD~~ilVvda~~g~--------~~qt~e~l~~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~ 159 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGP--------KTQTGEHMLILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN 159 (482)
T ss_dssp HTTSCCEEEEEEETTTCS--------CHHHHHHHHHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHhhCCEEEEEEecCCCc--------cHHHHHHHHHHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcc
Confidence 888999999999998631 1222222222222 3689999999999987532 233333322
Q ss_pred -CCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 381 -QGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 381 -~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
...+++++||++|+|+++|+++|.+.++
T Consensus 160 ~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 160 LKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2578999999999999999999999775
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.73 E-value=3.9e-18 Score=173.59 Aligned_cols=159 Identities=24% Similarity=0.290 Sum_probs=116.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCe-eEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDI-QITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~-~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|.+|+|||||+++|++... .+.+++++|.++....+.+.+. .+.+|||||+.+...............+..+
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 4899999999999999999998765 4678999999999999998875 8999999999876554444455667788999
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH--HHHHHHHHcCCCcEEEEecc
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~--~~~~l~~~~~~~~ii~vSA~ 391 (423)
|++++|+|++. . .....++.++..+ +.|.|+|+||+|+..... ..+.+.+.+ +.+++++||+
T Consensus 115 D~vllVvD~~~--------~--~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~~~~~~l~~~~-g~~v~~vSAk 178 (423)
T 3qq5_A 115 DCGILVTDSAP--------T--PYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAEELKGLYESRY-EAKVLLVSAL 178 (423)
T ss_dssp SEEEEECSSSC--------C--HHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCTHHHHHSSCCT-TCCCCCCSSC
T ss_pred CEEEEEEeCCC--------h--HHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHHHHHHHHHHHc-CCCEEEEECC
Confidence 99999999832 1 3345566666543 789999999999976542 223333222 5689999999
Q ss_pred cCcCHHHHHHHHHHHhccc
Q 014494 392 LEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~ 410 (423)
++.|++++++.|.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999654
No 137
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.73 E-value=2.4e-18 Score=159.09 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=107.5
Q ss_pred eEEEECCCCCcHHHHHHH-HHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGA-ISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~-Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+++|.+|||||||+++ +.+.. ......+.+|.......+......+.+|||||...... + ...++..+|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~~ 89 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG----L---RDGYYIQAQ 89 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC----C---CHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH----H---HHHHHhcCC
Confidence 799999999999999999 44431 22233444444433333322336889999999754222 2 234567899
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH--HHHHHHHHcCCCcEEEEeccc
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~--~~~~l~~~~~~~~ii~vSA~~ 392 (423)
++++|+|+++. .++..+..++.++..+. .+.|+|+|+||+|+..... ....+.+.. +.+++++||++
T Consensus 90 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 158 (221)
T 3gj0_A 90 CAIIMFDVTSR-------VTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-NLQYYDISAKS 158 (221)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCGGGCCHHHHH-TCEEEECBGGG
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccHHHHHHHHHc-CCEEEEEeCCC
Confidence 99999999872 45566666666665543 3789999999999975321 111122222 56899999999
Q ss_pred CcCHHHHHHHHHHHhccc
Q 014494 393 EEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 393 g~gi~eL~~~i~~~l~~~ 410 (423)
+.|+++++++|.+.+...
T Consensus 159 ~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TBTTTHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999887554
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=5.8e-18 Score=174.35 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccc-cccchHHHHHHHhc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE-NRGLGHAFLRHIER 312 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~-~~~l~~~fl~~i~~ 312 (423)
.++|+|||.+|||||||+|+|++.+.. +.+++++|.+...+.+.+.+..+.++||||+...... ...+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 468999999999999999999987653 6789999999998888888899999999998642211 11234455667889
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEeccc
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
+|++|+|+|..... . .....+...+.. .++|+|+|+||+|+.........+... ....++++||++
T Consensus 103 ad~il~VvD~~~~~------~--~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~~~~~e~~~l-g~~~~~~iSA~~ 168 (456)
T 4dcu_A 103 ADVIIFMVNGREGV------T--AADEEVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSL-GFGEPYPISGTH 168 (456)
T ss_dssp CSEEEEEEESSSCS------C--HHHHHHHHHHTT-----CCSCEEEEEECC---------CCSGGG-SSSSEEECCTTT
T ss_pred CCEEEEEEeCCCCC------C--hHHHHHHHHHHH-----cCCCEEEEEECccchhhhhhHHHHHHc-CCCceEEeeccc
Confidence 99999999987632 1 222233333322 479999999999987543222111111 223678999999
Q ss_pred CcCHHHHHHHHHHHhccc
Q 014494 393 EEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 393 g~gi~eL~~~i~~~l~~~ 410 (423)
+.|+++|++.+.+.+...
T Consensus 169 g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp CTTHHHHHHHHHTTGGGS
T ss_pred ccchHHHHHHHHhhcccc
Confidence 999999999998877643
No 139
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.72 E-value=3.9e-17 Score=146.74 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=100.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcCC-CCCCCcccce-ecceEEEEEe-----CCeeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTT-LRPNLGNMNF-----DDIQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftT-l~~~~g~v~~-----~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
+|+|+|.+|||||||+++|++.. +....+..|+ .+.....+.+ ....+.+|||+|+.+... + ...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~ 76 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----T---HPHF 76 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----T---SHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----h---hHHH
Confidence 79999999999999999999863 3333333221 2221122221 236889999999754221 2 1234
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH---HHHHHHc---CCC
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY---EELERRV---QGV 383 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~---~~l~~~~---~~~ 383 (423)
+..++++++|+|+++. ..++..+..|+.++.... .+.|+|+|+||+|+....... ....+.+ .+.
T Consensus 77 ~~~~~~~i~v~d~~~~------~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 77 MTQRALYLAVYDLSKG------QAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp HHHSEEEEEEEEGGGC------HHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred ccCCcEEEEEEeCCcc------hhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 5678999999999862 023455566666654432 368999999999998754432 2222222 134
Q ss_pred c----EEEEecccCc-CHHHHHHHHHHHhcccc
Q 014494 384 P----IYPVCAVLEE-GVPELKVGLRMLVNGEK 411 (423)
Q Consensus 384 ~----ii~vSA~~g~-gi~eL~~~i~~~l~~~~ 411 (423)
+ ++++||+++. ++++|++.|.+.+.+.+
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 4 8999999996 99999999988876543
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=5.8e-17 Score=164.27 Aligned_cols=158 Identities=24% Similarity=0.269 Sum_probs=109.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecce-------------------EEEEEeCCeeEEEEcCCCCcCC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPN-------------------LGNMNFDDIQITVADIPGLIKG 295 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~-------------------~g~v~~~~~~i~l~DtpG~i~~ 295 (423)
.+|+++|.+|+|||||+++|++.... ...+..+|.... ..........+.++||||+.+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~- 87 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV- 87 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH-
Confidence 48999999999999999999985322 222222221100 000001115789999999754
Q ss_pred ccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---H
Q 014494 296 AHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---V 372 (423)
Q Consensus 296 a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~ 372 (423)
+...+...+..+|++++|+|+++. .+..+...++..+..+ ..+|.|+|+||+|+.+.++ .
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~~-------~~~~qt~~~~~~~~~~----~~~~iivviNK~Dl~~~~~~~~~ 150 (403)
T 3sjy_A 88 ------LMATMLSGAALMDGAILVVAANEP-------FPQPQTREHFVALGII----GVKNLIIVQNKVDVVSKEEALSQ 150 (403)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTSC-------SSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCC-------CCcHHHHHHHHHHHHc----CCCCEEEEEECccccchHHHHHH
Confidence 667778889999999999999873 2234444444444332 2469999999999987653 3
Q ss_pred HHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 373 YEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 373 ~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.+.+.+.+ ...+++++||++|.|+++|++.|.+.+....
T Consensus 151 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 151 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 34454443 2568999999999999999999999876544
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=2.5e-17 Score=156.53 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=112.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcc-c-ceecceEEEEEeCCeeEEEEcCCCCcCCccccccc----hHHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYS-F-TTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGL----GHAFLRH 309 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~-f-tTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l----~~~fl~~ 309 (423)
.+|+|+|.+|||||||+++|++....+..+. . +|.....+.+.+.+..+.++||||+.........+ ...+..+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~ 102 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLS 102 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999999999875554443 3 67777888888999999999999998654322111 2233446
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEe-CCCcCChH--H--------HHHHHHH
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVAN-KIDEDGAE--E--------VYEELER 378 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlN-KiDl~~~~--~--------~~~~l~~ 378 (423)
+..+|++++|+|++.. .. ....++..+..+...-...|.|+|+| |+|+.... . .+..+.+
T Consensus 103 ~~~~d~il~V~d~~~~-------~~--~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 103 APGPHVLLLVTQLGRY-------TS--QDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp TTCCSEEEEEEETTCC-------CH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred CCCCcEEEEEEeCCCC-------CH--HHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence 6789999999999751 11 22223333333321112468888887 99997531 1 0111333
Q ss_pred HcCC----CcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 379 RVQG----VPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 379 ~~~~----~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.+.. ...+++||+++.|++++++.|.+.+....
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 3321 11178999999999999999999887643
No 142
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.71 E-value=3.1e-17 Score=149.27 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=110.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
+|+|+|++|||||||+++|++........+..+.++..+.+.+++ ..+.+|||||...... +. ...+..++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~~---~~~~~~~~ 79 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR----IT---SAYYRGAV 79 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC----CC---HHHHTTCS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh----hh---HHHHhcCC
Confidence 799999999999999999999765554455555677788888888 4678899999765221 22 23456789
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEec
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVCA 390 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vSA 390 (423)
++++|+|+++. ..+.....+..++... .....|.++|+||+|+... ......+... ++..++.+||
T Consensus 80 ~~i~v~d~~~~-------~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~~d~Sa 149 (199)
T 2f9l_A 80 GALLVYDIAKH-------LTYENVERWLKELRDH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NNLSFIETSA 149 (199)
T ss_dssp EEEEEEETTCH-------HHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-TTCEEEECCT
T ss_pred EEEEEEECcCH-------HHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHH-cCCeEEEEeC
Confidence 99999999862 3344444455544332 1236899999999999642 1223334333 4678899999
Q ss_pred ccCcCHHHHHHHHHHHhcc
Q 014494 391 VLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~~g~gi~eL~~~i~~~l~~ 409 (423)
+++.|++++++.|.+.+.+
T Consensus 150 l~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887753
No 143
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.55 E-value=6e-19 Score=161.02 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=103.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++ ..+.+|||||+.+. ......++..+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 102 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-------DRLRPLSYPQT 102 (204)
Confidence 4899999999999999999987543 33444454444444444444 45679999998652 22333467789
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHH----------------HHH
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVY----------------EEL 376 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~----------------~~l 376 (423)
|++++|+|+++. .++.... .+...+..+. .+.|+++|+||+|+....... ..+
T Consensus 103 d~iilv~D~~~~-------~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 103 DVFLICFSLVSP-------ASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 999999999873 3344443 4444444332 278999999999997542111 111
Q ss_pred HHHcCCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 377 ERRVQGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 377 ~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
.+.+...++++|||+++.|++++++.|.+.+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 1122112789999999999999999887643
No 144
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.71 E-value=3.8e-17 Score=159.69 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=112.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe--eEEEEcCCCCcCCccccccchHHHHHHH
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHI 310 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~--~i~l~DtpG~i~~a~~~~~l~~~fl~~i 310 (423)
+...+|+++|.+|+|||||++++++... ...+..|+.+.....+.+++. .+.+|||||+..... ....++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~ 224 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR-------LRPLSY 224 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT-------TGGGGC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHhc
Confidence 3446899999999999999999997543 445666666666666677764 456999999865321 222456
Q ss_pred hccceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH----------------H
Q 014494 311 ERTKVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV----------------Y 373 (423)
Q Consensus 311 ~~ad~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~----------------~ 373 (423)
..+|++++|+|+++. .++.... .+...+..+. .+.|+++|+||+|+...... .
T Consensus 225 ~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 225 PQTDVFLICFSLVSP-------ASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TTCSEEEEEEETTCH-------HHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred cCCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 789999999999872 3444443 4555555443 27899999999999654221 2
Q ss_pred HHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 374 EELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 374 ~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
..+.+.....++++|||+++.|++++++.|.+.+-
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 22333332248999999999999999999987764
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.70 E-value=5.6e-17 Score=169.59 Aligned_cols=125 Identities=21% Similarity=0.283 Sum_probs=90.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC----------------CCCC------cccceecceEEEEEeCCeeEEEEcCCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP----------------AVGH------YSFTTLRPNLGNMNFDDIQITVADIPG 291 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~----------------~i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG 291 (423)
...+|+|+|++|||||||+++|+.... ...+ .++.|.......+.+.+..+.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 445899999999999999999962111 1111 245677778888899999999999999
Q ss_pred CcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--
Q 014494 292 LIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-- 369 (423)
Q Consensus 292 ~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-- 369 (423)
+.+ +......++..+|++|+|+|++.. .. .+...++..+.. .+.|.|+|+||+|+...
T Consensus 92 ~~d-------f~~~~~~~l~~aD~allVvDa~~g-------~~-~~t~~~~~~~~~-----~~iPiivviNK~Dl~~~~~ 151 (528)
T 3tr5_A 92 HAD-------FTEDTYRTLTAVDSALMVIDAAKG-------VE-PRTIKLMEVCRL-----RHTPIMTFINKMDRDTRPS 151 (528)
T ss_dssp STT-------CCHHHHHGGGGCSEEEEEEETTTC-------SC-HHHHHHHHHHHT-----TTCCEEEEEECTTSCCSCH
T ss_pred chh-------HHHHHHHHHHhCCEEEEEEeCCCC-------CC-HHHHHHHHHHHH-----cCCCEEEEEeCCCCccccH
Confidence 876 555677889999999999999873 12 233344444433 37899999999999753
Q ss_pred HHHHHHHHH
Q 014494 370 EEVYEELER 378 (423)
Q Consensus 370 ~~~~~~l~~ 378 (423)
.+.++.+++
T Consensus 152 ~~~l~ei~~ 160 (528)
T 3tr5_A 152 IELLDEIES 160 (528)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 234444444
No 146
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=3.1e-16 Score=157.85 Aligned_cols=93 Identities=35% Similarity=0.568 Sum_probs=85.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCC-----------------eeEEEEcCCCCc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDD-----------------IQITVADIPGLI 293 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~-----------------~~i~l~DtpG~i 293 (423)
+..+..|+|||+||||||||+|+|++... .+++|||||++|+.|.+.+++ ..+.++|+||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34566899999999999999999999887 789999999999999999886 358999999999
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCC
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLAS 324 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~ 324 (423)
.+++...+++..|+.+++.+|.+++|+|+++
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999888899999999999999999999975
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=1.4e-16 Score=152.91 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=89.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcc------cceecceEEEEEe--CC--eeEEEEcCCCCcCCcccccc-----
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYS------FTTLRPNLGNMNF--DD--IQITVADIPGLIKGAHENRG----- 301 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~------ftTl~~~~g~v~~--~~--~~i~l~DtpG~i~~a~~~~~----- 301 (423)
+|+|||.+|||||||+|+|++......+++ ..|+........+ ++ ..+.++||||+.........
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~ 89 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI 89 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHH
Confidence 799999999999999999999877766663 4555555444443 33 48999999999543221111
Q ss_pred --chHHHHHHHhc-------------cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCc
Q 014494 302 --LGHAFLRHIER-------------TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDE 366 (423)
Q Consensus 302 --l~~~fl~~i~~-------------ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl 366 (423)
+..+|..++.. +|+++++++.+.. ........++..+.. ..|.|+|+||+|+
T Consensus 90 ~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-------~~~~~d~~~l~~l~~------~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 90 DYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-------GLKPLDIEFMKRLHE------KVNIIPLIAKADT 156 (274)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-------SCCHHHHHHHHHHTT------TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-------CCCHHHHHHHHHHhc------cCCEEEEEeccCC
Confidence 11223334433 5688888876641 111222334444421 6899999999999
Q ss_pred CChHHH---HHHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 367 DGAEEV---YEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 367 ~~~~~~---~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
....+. .+.+.+.+ .+.+++.+||.+++|++++++.|.+.++-
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 876543 22333333 46788999999999999999999887753
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=9.6e-17 Score=145.40 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=111.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe--eEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI--QITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~--~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
.+|+|+|++|||||||+++|++........+..+.++..+.+.+++. .+.+|||+|+.+... +. ..++..+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~~---~~~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----IT---SAYYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----CC---HHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----hh---HHHhhcC
Confidence 47999999999999999999998665555666667777888988885 456799999865321 22 2345678
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh----HHHHHHHHHHcCCCcEEEEe
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA----EEVYEELERRVQGVPIYPVC 389 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~----~~~~~~l~~~~~~~~ii~vS 389 (423)
+.+++|+|+++. .++..+..+..++.... ....|.++|+||+|+... ......+... ++..++.+|
T Consensus 103 ~~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-~~~~~ld~S 172 (191)
T 1oix_A 103 VGALLVYDIAKH-------LTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK-NGLSFIETS 172 (191)
T ss_dssp CEEEEEEETTCH-------HHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEEECC
T ss_pred CEEEEEEECcCH-------HHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEEEEe
Confidence 899999998762 23444444554443321 236799999999998642 1223334433 467889999
Q ss_pred cccCcCHHHHHHHHHHHh
Q 014494 390 AVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 390 A~~g~gi~eL~~~i~~~l 407 (423)
|+++.|++++++.|.+.+
T Consensus 173 ald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999988754
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.69 E-value=3e-16 Score=159.34 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=108.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEe---------------C--------CeeEEEEcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNF---------------D--------DIQITVADI 289 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~---------------~--------~~~i~l~Dt 289 (423)
.+|+++|++++|||||+++|++.... ....+..|.+.......+ + ...+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 37999999999999999999975332 122244455544333332 1 157999999
Q ss_pred CCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 290 PGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 290 pG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
||+.+ +...+...+..+|++++|+|+++.. +..+....+..+..+ ...|.|+|+||+|+...
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~----~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII----GQKNIIIAQNKIELVDK 152 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCH
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc----CCCcEEEEEECccCCCH
Confidence 99754 5556667778889999999998631 112222222222222 24688999999999876
Q ss_pred HH---HHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 370 EE---VYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 370 ~~---~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+. ..+.+++.+ ...+++++||+++.|+++|+++|.+.+...
T Consensus 153 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 153 EKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 43 345555544 356899999999999999999999887644
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.69 E-value=3.2e-16 Score=160.58 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=103.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCC-------------------------------CCcccceecceEEEEEeCCee
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------------GHYSFTTLRPNLGNMNFDDIQ 283 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i-------------------------------~~~~ftTl~~~~g~v~~~~~~ 283 (423)
..+|+++|.+|+|||||+++|+.....+ ...+..|.+.....+..++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 3489999999999999999996532111 112456777777788888899
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEe
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVAN 362 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlN 362 (423)
+.++||||+.+ +...+...+..+|++++|+|+++..... +.....+....+..+.. ...| .|+|+|
T Consensus 97 ~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~-~~~~~~qt~e~l~~~~~-----~~v~~iIvviN 163 (439)
T 3j2k_7 97 FTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFET-GFEKGGQTREHAMLAKT-----AGVKHLIVLIN 163 (439)
T ss_pred EEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCcccc-ccCCCchHHHHHHHHHH-----cCCCeEEEEee
Confidence 99999999865 5666777888999999999998732100 00000122222222221 2566 889999
Q ss_pred CCCcCCh-------HHHHHHHHHHc--------CCCcEEEEecccCcCHHHHHH
Q 014494 363 KIDEDGA-------EEVYEELERRV--------QGVPIYPVCAVLEEGVPELKV 401 (423)
Q Consensus 363 KiDl~~~-------~~~~~~l~~~~--------~~~~ii~vSA~~g~gi~eL~~ 401 (423)
|+|+... ++..+.+...+ ...+++++||++|.|++++.+
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999642 12223333322 145799999999999999655
No 151
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.68 E-value=2.4e-17 Score=173.07 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=103.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC------CCCCcccceecceEEEEEeC----CeeEEEEcCCCCcCCccccccchHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP------AVGHYSFTTLRPNLGNMNFD----DIQITVADIPGLIKGAHENRGLGHA 305 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~------~i~~~~ftTl~~~~g~v~~~----~~~i~l~DtpG~i~~a~~~~~l~~~ 305 (423)
.+|+|||.+|||||||+++|++... .++.+.+++..++.+.+.++ +..+.+|||||...... +...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----~~~~ 117 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----SHQF 117 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT----TCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH----HHHH
Confidence 3799999999999999999998752 23333333333333333333 37899999999654222 3333
Q ss_pred HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-HHHHHHHHc--CC
Q 014494 306 FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV--QG 382 (423)
Q Consensus 306 fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-~~~~l~~~~--~~ 382 (423)
.+..+|++++|+|+++. +....+..++..+.+ +.|+|+|+||+|+..... ..+.+++.+ .+
T Consensus 118 ---~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 181 (535)
T 3dpu_A 118 ---FMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIE 181 (535)
T ss_dssp ---HHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT
T ss_pred ---HccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcC
Confidence 35679999999999862 445667777776643 689999999999975422 123334333 24
Q ss_pred CcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 383 VPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 383 ~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.++++|||+++.|+++|++.|.+.+.+..
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 57999999999999999999999887654
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=2.8e-16 Score=159.37 Aligned_cols=155 Identities=22% Similarity=0.240 Sum_probs=108.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC---CC---CCCC-----------cccceecceEEEEEeCCeeEEEEcCCCCcCCccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA---KP---AVGH-----------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHE 298 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~---~~---~i~~-----------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~ 298 (423)
.+|+++|++|+|||||+++|++. .- .... ....|.+.....+...+..+.++||||+.+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~---- 87 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD---- 87 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG----
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH----
Confidence 37999999999999999999873 10 0001 234455555555566668999999999875
Q ss_pred cccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHH----H
Q 014494 299 NRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEV----Y 373 (423)
Q Consensus 299 ~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~----~ 373 (423)
+.......+..+|++++|+|+++. ...+...++..+.. ...| .|+|+||+|+....+. .
T Consensus 88 ---f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~~~~ 151 (405)
T 2c78_A 88 ---YIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQ-----VGVPYIVVFMNKVDMVDDPELLDLVE 151 (405)
T ss_dssp ---GHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEEECccccCcHHHHHHHH
Confidence 556677788999999999999873 12333444444432 2678 7889999999853221 2
Q ss_pred HHHHHH---cC----CCcEEEEecccCcC------------------HHHHHHHHHHHhccc
Q 014494 374 EELERR---VQ----GVPIYPVCAVLEEG------------------VPELKVGLRMLVNGE 410 (423)
Q Consensus 374 ~~l~~~---~~----~~~ii~vSA~~g~g------------------i~eL~~~i~~~l~~~ 410 (423)
+.+.+. +. ..+++++||+++.| +++|++.|...++..
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 223222 21 36899999999987 888999998887643
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=3.5e-16 Score=158.78 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=98.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEEEEEe---------------C--------CeeEEEEcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLGNMNF---------------D--------DIQITVADI 289 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g~v~~---------------~--------~~~i~l~Dt 289 (423)
.+|+++|++++|||||+++|++.... ....+..|.+.......+ + ...+.++||
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 88 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDS 88 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEEC
Confidence 48999999999999999999975322 112234455443332222 1 157999999
Q ss_pred CCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 290 PGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 290 pG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
||+.+ +...+...+..+|++++|+|+++.. +..+....+..+.. +..+|.|+|+||+|+...
T Consensus 89 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~----l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 89 PGHET-------LMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMALEI----LGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp SSHHH-------HHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHHHHH----TTCCCEEEEEECTTSSCT
T ss_pred CCHHH-------HHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHHHHH----cCCCeEEEEEEccCCCCH
Confidence 99754 4445555667789999999998631 11222222222222 224689999999999764
Q ss_pred H---HHHHHHHHHc-----CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 370 E---EVYEELERRV-----QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 370 ~---~~~~~l~~~~-----~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+ +..+.+++.+ ...+++++||++++|+++|+++|.+.+...
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 3 2344455443 356899999999999999999999887654
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=7.7e-16 Score=154.33 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=109.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcccee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVL 316 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~l 316 (423)
.|+++|.+|+|||||+++|+ ....|.+.....+.+++..+.++||||+.+ +.......+..+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~-------f~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK-------TLKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTT-------CHHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHH-------HHHHHHHHHHHCCEE
Confidence 89999999999999999998 345666766677777788999999999876 555667788999999
Q ss_pred EEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe-EEEEe-CCCcCChHH---HHHHHHHHcC-----CCcEE
Q 014494 317 AYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-LVVAN-KIDEDGAEE---VYEELERRVQ-----GVPIY 386 (423)
Q Consensus 317 l~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-IiVlN-KiDl~~~~~---~~~~l~~~~~-----~~~ii 386 (423)
++|+| .. ....+...++..+.. ...|. |+|+| |+|+ ..+. ..+++++.+. ..+++
T Consensus 88 ilVvd-~~--------g~~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 88 VLCIP-PQ--------GLDAHTGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp EEEEC-TT--------CCCHHHHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred EEEEc-CC--------CCcHHHHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999 64 233444444444332 26787 88899 9999 6432 2345665542 36899
Q ss_pred E--Eeccc---CcCHHHHHHHHHHHhcc
Q 014494 387 P--VCAVL---EEGVPELKVGLRMLVNG 409 (423)
Q Consensus 387 ~--vSA~~---g~gi~eL~~~i~~~l~~ 409 (423)
+ +||++ ++|+++|++.|.+.++.
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 9 99999 99999999999988764
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.65 E-value=1.3e-15 Score=161.13 Aligned_cols=158 Identities=17% Similarity=0.191 Sum_probs=107.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCC---------CC------cccceecceEEEEEeC---C--eeEEEEcCCCCc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD---D--IQITVADIPGLI 293 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i---------~~------~~ftTl~~~~g~v~~~---~--~~i~l~DtpG~i 293 (423)
.+.+|+|+|++|+|||||+++|+.....+ .+ ....|.......+.+. + ..+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34589999999999999999997521111 11 1233444444445443 2 678999999997
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HH
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EE 371 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~ 371 (423)
+ +...+.+.+..||.+++|+|+++. ........+...+ . .+.|.|+|+||+|+... +.
T Consensus 85 d-------F~~ev~r~l~~aD~aILVVDa~~g-------v~~qt~~~~~~a~-~-----~~ipiIvviNKiDl~~a~~~~ 144 (600)
T 2ywe_A 85 D-------FSYEVSRALAACEGALLLIDASQG-------IEAQTVANFWKAV-E-----QDLVIIPVINKIDLPSADVDR 144 (600)
T ss_dssp G-------GHHHHHHHHHTCSEEEEEEETTTB-------CCHHHHHHHHHHH-H-----TTCEEEEEEECTTSTTCCHHH
T ss_pred h-------HHHHHHHHHHhCCEEEEEEECCCC-------ccHHHHHHHHHHH-H-----CCCCEEEEEeccCccccCHHH
Confidence 6 555677888999999999999874 2233333332222 1 37899999999999763 34
Q ss_pred HHHHHHHHcC--CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 372 VYEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 372 ~~~~l~~~~~--~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..+.+.+.+. ..+++++||++|.|+++|+++|.+.++...
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 5566766652 125899999999999999999999987544
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.65 E-value=4.4e-16 Score=161.43 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=101.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCC-------------------------------CCCcccceecceEEEEEeCCeeE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPA-------------------------------VGHYSFTTLRPNLGNMNFDDIQI 284 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~-------------------------------i~~~~ftTl~~~~g~v~~~~~~i 284 (423)
.+|+++|.+|+|||||+++|++.... ....++.|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 37999999999999999999754111 12234667777777788888999
Q ss_pred EEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 014494 285 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
.|+||||+.+ +...+...+..+|++|+|+|+++..... ......+.......+. .+..+|.|+|+||+
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~-~~~~~~qt~e~~~~~~----~~~~~~iIvviNK~ 181 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFES-GFDLDGQTKEHMLLAS----SLGIHNLIIAMNKM 181 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHH----HTTCCCEEEEEECG
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCcccc-ccchhhhHHHHHHHHH----HcCCCcEEEEEECc
Confidence 9999999965 6677788899999999999998731100 0001123332222222 22346799999999
Q ss_pred CcCCh-----HHHHHHHHHHc-------CCCcEEEEecccCcCHHH
Q 014494 365 DEDGA-----EEVYEELERRV-------QGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 365 Dl~~~-----~~~~~~l~~~~-------~~~~ii~vSA~~g~gi~e 398 (423)
|+... ++..+.+.+.+ ...+++++||++|.|+++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99862 12233333322 146789999999999974
No 157
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.65 E-value=5.3e-16 Score=155.97 Aligned_cols=116 Identities=29% Similarity=0.536 Sum_probs=70.9
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe-----------------eEEEEcCCCCcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI-----------------QITVADIPGLIK 294 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~-----------------~i~l~DtpG~i~ 294 (423)
+....+|+|||.||||||||+|+|++....++++||+|++|+.|.+.+++. .+.++||||+.+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 445568999999999999999999999888899999999999999988752 489999999999
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCC---CCCCCcHHHHHHHHHHHHh
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDG---RKGIKPWKQLRDLIIELEH 347 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~---~~~~~~~~~~~~l~~eL~~ 347 (423)
+++.+.+++..|+.+++.||++++|+|+++..+- ....+|...+..+..+|..
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l 154 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL 154 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh
Confidence 9988888999999999999999999999863210 1113566666666666643
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.65 E-value=1.6e-15 Score=160.53 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=105.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCC---------CC------cccceecceEEEEEeC-----CeeEEEEcCCCCcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAV---------GH------YSFTTLRPNLGNMNFD-----DIQITVADIPGLIK 294 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i---------~~------~~ftTl~~~~g~v~~~-----~~~i~l~DtpG~i~ 294 (423)
+.+|+|+|++++|||||+++|+.....+ .+ ....|.......+.+. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3489999999999999999997632111 11 1234554444555554 26889999999976
Q ss_pred CccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHH
Q 014494 295 GAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEV 372 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~ 372 (423)
+...+.+.+..||.+++|+|+++.. .......|...+ . .+.|.|+|+||+|+... ++.
T Consensus 84 -------F~~ev~~~l~~aD~aILVVDa~~gv-------~~qt~~~~~~~~-~-----~~ipiIvViNKiDl~~a~~~~v 143 (599)
T 3cb4_D 84 -------FSYEVSRSLAACEGALLVVDAGQGV-------EAQTLANCYTAM-E-----MDLEVVPVLNKIDLPAADPERV 143 (599)
T ss_dssp -------GHHHHHHHHHHCSEEEEEEETTTCC-------CTHHHHHHHHHH-H-----TTCEEEEEEECTTSTTCCHHHH
T ss_pred -------HHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHH-H-----CCCCEEEeeeccCcccccHHHH
Confidence 5566778889999999999998742 223333333222 1 26899999999999763 445
Q ss_pred HHHHHHHcC--CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 373 YEELERRVQ--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 373 ~~~l~~~~~--~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
.+.+.+.+. ..+++++||+++.|+++|+++|.+.++...
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 667777662 235899999999999999999999987654
No 159
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.64 E-value=1.1e-15 Score=149.01 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=100.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCC------Ccc---cceecce-------------------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVG------HYS---FTTLRPN------------------------------- 273 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~------~~~---ftTl~~~------------------------------- 273 (423)
..+.|+++|.+|||||||+|+|++...... ..| .++..+.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 456899999999999999999999764221 222 1111100
Q ss_pred -------E----E------EE--Ee-CCeeEEEEcCCCCcCCcc------ccccchHHHHHHHhccceeEEEEecCCCCC
Q 014494 274 -------L----G------NM--NF-DDIQITVADIPGLIKGAH------ENRGLGHAFLRHIERTKVLAYVVDLASGLD 327 (423)
Q Consensus 274 -------~----g------~v--~~-~~~~i~l~DtpG~i~~a~------~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~ 327 (423)
. + .+ .. .+..+.++||||+..... ....+...+..++..+|++++|+|.+....
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 0 01 11 236899999999975321 111244456678899999999999854210
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-HHHHHHHHcCC--CcEEEEec---cc---CcCHHH
Q 014494 328 GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRVQG--VPIYPVCA---VL---EEGVPE 398 (423)
Q Consensus 328 ~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-~~~~l~~~~~~--~~ii~vSA---~~---g~gi~e 398 (423)
.. .....+...+.. ...|.|+|+||+|+..... ..+.+...+.. ..++++|+ .+ +.|+++
T Consensus 183 -----~~-~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 183 -----AN-SDALQLAKEVDP-----EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp -----TT-CSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred -----hh-hHHHHHHHHhCC-----CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHH
Confidence 00 111123333311 3789999999999975433 34444432212 45555555 44 789999
Q ss_pred HHHHHHHHhcccc
Q 014494 399 LKVGLRMLVNGEK 411 (423)
Q Consensus 399 L~~~i~~~l~~~~ 411 (423)
+++.+.++++..+
T Consensus 252 l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 252 SLKSEILYFKNHP 264 (315)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887543
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.63 E-value=1.6e-17 Score=173.54 Aligned_cols=156 Identities=23% Similarity=0.187 Sum_probs=111.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe-CCeeEEEEcCCCCcCCccccccchHHHHHHHhc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF-DDIQITVADIPGLIKGAHENRGLGHAFLRHIER 312 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~-~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ 312 (423)
..++|+++|++|+|||||+++|++........+++|.+.....+.+ .+..+.||||||+...... ....+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-------~~~~~~~ 75 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-------RARGTQV 75 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-------BBSSSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-------HHHHHcc
Confidence 3468999999999999999999987655566777787777766666 3578999999998653322 2244577
Q ss_pred cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHHHc-------CCC
Q 014494 313 TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELERRV-------QGV 383 (423)
Q Consensus 313 ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~~~-------~~~ 383 (423)
+|++++|+|+++. ...+....+..+.. .+.|.|+|+||+|+.... .....+.... ...
T Consensus 76 aD~vILVVDa~dg--------~~~qt~e~l~~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 76 TDIVILVVAADDG--------VMKQTVESIQHAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp BSSCEEECBSSSC--------CCHHHHHHHHHHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred CCEEEEEEECCCC--------ccHHHHHHHHHHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 9999999999873 12233333333322 368999999999997532 1122232221 134
Q ss_pred cEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 384 PIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 384 ~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+++++||++|.|+++|++.|..+++.
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 79999999999999999999988764
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=3.7e-16 Score=150.97 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=100.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCC------CCCccc----------------------ceecce------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPA------VGHYSF----------------------TTLRPN------------ 273 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~------i~~~~f----------------------tTl~~~------------ 273 (423)
..+.|+++|.+|||||||+|+|++.... +...|. +|.+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999997642 222332 332210
Q ss_pred -----------EEEEEeC-CeeEEEEcCCCCcCCcc----cc--ccchHHHHHHHhccceeE-EEEecCCCCCCCCCCCc
Q 014494 274 -----------LGNMNFD-DIQITVADIPGLIKGAH----EN--RGLGHAFLRHIERTKVLA-YVVDLASGLDGRKGIKP 334 (423)
Q Consensus 274 -----------~g~v~~~-~~~i~l~DtpG~i~~a~----~~--~~l~~~fl~~i~~ad~ll-~VvD~s~~~~~~~~~~~ 334 (423)
.-.+..+ ...+.++||||+..... .. ..+......++..++.++ +|+|++....
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~------- 177 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------- 177 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------
Confidence 0011112 36899999999976331 11 023344556777777555 7999876321
Q ss_pred HHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-HHHHHHHHc-C----CCcEEEEecccCcCHHHHHHHHHHH
Q 014494 335 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV-Q----GVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 335 ~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-~~~~l~~~~-~----~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
......+...+. + ...|.|+|+||+|+..... ..+.+...+ . ..+++++||+++.|+++|++.|.+.
T Consensus 178 ~~~~~~~~~~~~---~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 178 NSDALKIAKEVD---P--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GCHHHHHHHHHC---T--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hhHHHHHHHHhC---C--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 111122333331 1 3689999999999976432 223333321 1 1367899999999999999988764
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=1.6e-15 Score=153.35 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=103.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC------C----------CCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA------V----------GHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR 300 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~------i----------~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~ 300 (423)
+|+++|++|+|||||+++|++.... . ......|.+.....+...+..+.++||||+.+
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~------ 78 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD------ 78 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH------
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH------
Confidence 7999999999999999999874100 0 01223455544444555568999999999865
Q ss_pred cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHH----HHH
Q 014494 301 GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEV----YEE 375 (423)
Q Consensus 301 ~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~----~~~ 375 (423)
+.......+..+|++++|+|+++. ...+....+..+.. ...| .|+|+||+|+....+. .+.
T Consensus 79 -f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~~~~ 144 (397)
T 1d2e_A 79 -YVKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQ-----IGVEHVVVYVNKADAVQDSEMVELVELE 144 (397)
T ss_dssp -HHHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHH-----TTCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred -HHHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHH-----cCCCeEEEEEECcccCCCHHHHHHHHHH
Confidence 444556667889999999999873 12232333333322 3678 5789999999853221 222
Q ss_pred HHHH---cC----CCcEEEEecccCcC----------HHHHHHHHHHHhccc
Q 014494 376 LERR---VQ----GVPIYPVCAVLEEG----------VPELKVGLRMLVNGE 410 (423)
Q Consensus 376 l~~~---~~----~~~ii~vSA~~g~g----------i~eL~~~i~~~l~~~ 410 (423)
+++. +. ..+++++||+++.| +++|++.|.+.++..
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 2222 21 36899999999774 899999999888653
No 163
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=146.57 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=101.6
Q ss_pred CeEEEECCC---------CCcHHHHHHHHHcC--CCCCCCcccce--ecceE--------------EEEEeCC--eeEEE
Q 014494 236 ADVGLVGMP---------SAGKSTLLGAISRA--KPAVGHYSFTT--LRPNL--------------GNMNFDD--IQITV 286 (423)
Q Consensus 236 ~~V~LVG~~---------naGKSTLLn~Lsg~--~~~i~~~~ftT--l~~~~--------------g~v~~~~--~~i~l 286 (423)
.+|+|||.+ |||||||+++|++. .....++..|| .+... +...+++ ..+.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i 99 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHI 99 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEE
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEE
Confidence 389999999 99999999999984 22333444333 22111 1111222 56788
Q ss_pred Ec------CCCCcCCcccc--------------------------ccchHHHHHHH-----hccceeEEEEecCCCCCCC
Q 014494 287 AD------IPGLIKGAHEN--------------------------RGLGHAFLRHI-----ERTKVLAYVVDLASGLDGR 329 (423)
Q Consensus 287 ~D------tpG~i~~a~~~--------------------------~~l~~~fl~~i-----~~ad~ll~VvD~s~~~~~~ 329 (423)
|| |||+....... .++...|.+++ ..||++++|+|+++..
T Consensus 100 ~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~--- 176 (255)
T 3c5h_A 100 VEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM--- 176 (255)
T ss_dssp EEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-----
T ss_pred EEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc---
Confidence 87 55553322110 01111111111 1589999999998720
Q ss_pred CCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHH---cCCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 330 KGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERR---VQGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 330 ~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~---~~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
..++..+..++.++..+. ...+.|+|+|+||+|+.....+ +...+. ..+.+++++||+++.|+++++++|.+.
T Consensus 177 --~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 --NRNFDDQLKFVSNLYNQL-AKTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHH-HHTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 046777777777765441 1237899999999999765443 233322 236789999999999999999999887
Q ss_pred hc
Q 014494 407 VN 408 (423)
Q Consensus 407 l~ 408 (423)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2e-15 Score=137.79 Aligned_cols=165 Identities=17% Similarity=0.172 Sum_probs=98.5
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCCC--CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccc---cc---
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENR---GL--- 302 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~~--~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~---~l--- 302 (423)
.+..+..|+|+|++|||||||+++|++... .+.+.+++|.. .+.+.+++ .+.++||||+........ .+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 445566899999999999999999998752 23445555543 24444444 788999999864211000 01
Q ss_pred hHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH---HHHHHHH
Q 014494 303 GHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV---YEELERR 379 (423)
Q Consensus 303 ~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~---~~~l~~~ 379 (423)
...++.....++.+++|+|++.. ..... ..+...+. ....|.++|.||+|+....+. ...++..
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~-------~~~~~-~~~~~~~~-----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHP-------LKDLD-QQMIEWAV-----DSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC-------CCHHH-HHHHHHHH-----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCC-------CchhH-HHHHHHHH-----HcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 11222333568899999999863 12211 12222222 136899999999999875321 2333333
Q ss_pred c--C--CCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 380 V--Q--GVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 380 ~--~--~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
+ + ...++++||+++.|++++++.|.+.+.+..
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 2 1 346789999999999999999999887643
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-15 Score=162.29 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCC-------------------------------cccceecceEEEEEeCC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGH-------------------------------YSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~-------------------------------~~ftTl~~~~g~v~~~~ 281 (423)
+...+|++||++|+|||||+++|++....+.. .+++|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 44568999999999999999999976443322 24678888888888888
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+.||||||+.+ +...+...+..+|++|+|+|++..... .+.....+....+..+. .+...|.|+|+
T Consensus 245 ~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e-~~~~~~~qt~e~l~~~~----~lgi~~iIVVv 312 (611)
T 3izq_1 245 ANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLAS----SLGIHNLIIAM 312 (611)
T ss_dssp CEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHH-TTCCTTSHHHHHHHHHH----TTTCCEEEEEE
T ss_pred ceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCccc-ccchhhhHHHHHHHHHH----HcCCCeEEEEE
Confidence 9999999999865 556666778899999999999852000 00001112222222221 22235589999
Q ss_pred eCCCcCCh-----HHHHHHHHHHc-------CCCcEEEEecccCcCHHHH
Q 014494 362 NKIDEDGA-----EEVYEELERRV-------QGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 362 NKiDl~~~-----~~~~~~l~~~~-------~~~~ii~vSA~~g~gi~eL 399 (423)
||+|+... +++.+.+...+ ...++++|||++|.|++++
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999862 12233333322 1468999999999999865
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.62 E-value=3.7e-15 Score=152.44 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=96.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC-----------CCcc----------------------cceecceEEEEEeCCee
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV-----------GHYS----------------------FTTLRPNLGNMNFDDIQ 283 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i-----------~~~~----------------------ftTl~~~~g~v~~~~~~ 283 (423)
+|+++|.+|+|||||+++|++....+ +.++ ..|++.....+..++..
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~ 105 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRK 105 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEE
T ss_pred EEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCce
Confidence 79999999999999999998643111 1111 23444445556667789
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
+.+|||||+.+ +...+...+..+|++++|+|+++. ...+...++..+.. +..+|.|+|+||
T Consensus 106 ~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~----~~~~~iIvviNK 166 (434)
T 1zun_B 106 FIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASL----LGIKHIVVAINK 166 (434)
T ss_dssp EEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHH----TTCCEEEEEEEC
T ss_pred EEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHH----cCCCeEEEEEEc
Confidence 99999999865 556677788999999999999873 12233333332222 122468999999
Q ss_pred CCcCCh-HH----HHHHHHHHc---C----CCcEEEEecccCcCHHH
Q 014494 364 IDEDGA-EE----VYEELERRV---Q----GVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 364 iDl~~~-~~----~~~~l~~~~---~----~~~ii~vSA~~g~gi~e 398 (423)
+|+... .+ ..+.+.+.+ . ..+++++||++|.|+++
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 999862 11 233333322 1 25799999999999987
No 167
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.59 E-value=7.3e-15 Score=146.10 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=91.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC------CCCC--------------------------CCcccceecceEEEE-----
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA------KPAV--------------------------GHYSFTTLRPNLGNM----- 277 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~------~~~i--------------------------~~~~ftTl~~~~g~v----- 277 (423)
...|+|+|+||||||||+|+|++. +..+ .+..|.|..|+.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 458999999999999999999863 1111 112232222222211
Q ss_pred ---------EeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhh
Q 014494 278 ---------NFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH 348 (423)
Q Consensus 278 ---------~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~ 348 (423)
...+..++++||||+... .....+.+|++++|+|++.. ... +.+..
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~-------~~~---~~i~~----- 208 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGG-------DEL---QGIKR----- 208 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC-------------------------
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcc-------hhH---HHhHH-----
Confidence 124578999999997531 12336789999999998752 111 11111
Q ss_pred hcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc---------CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 349 QEGLSDRPSLVVANKIDEDGAEE---VYEELERRV---------QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 349 ~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~---------~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
.+...|.++|+||+|+..... ....+...+ ...+++++||++++|+++|+++|.+.+..
T Consensus 209 --~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 209 --GIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp ----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 123679999999999975432 222332211 13578999999999999999999887754
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=9.4e-15 Score=134.28 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=81.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHh---
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE--- 311 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~--- 311 (423)
..+|+|+|++|+|||||+++|++...... .++..++.+. .+....+.+|||||+... ...+..++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYDGSGVTLVDFPGHVKL-------RYKLSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGGGSSCEEEECCCCGGG-------THHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-EeeCceEEEEECCCcHHH-------HHHHHHHHHhcc
Confidence 45899999999999999999998753221 1111222211 114578999999999652 222333333
Q ss_pred -ccceeEEEEecC-CCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCChH---HHH-------HHHH
Q 014494 312 -RTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGAE---EVY-------EELE 377 (423)
Q Consensus 312 -~ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~~---~~~-------~~l~ 377 (423)
.++++++|+|++ + ..++.....++.++..... .....|.++|+||+|+.... .+. ..+.
T Consensus 81 ~~~~~~i~v~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 153 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVD-------PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153 (218)
T ss_dssp GGEEEEEEEEETTSC-------TTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCC-------hHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHH
Confidence 389999999998 4 2344444444444433211 12478999999999997642 111 2222
Q ss_pred HHcCCCcEEEEecccCcC
Q 014494 378 RRVQGVPIYPVCAVLEEG 395 (423)
Q Consensus 378 ~~~~~~~ii~vSA~~g~g 395 (423)
.. ...+++.+||+++.+
T Consensus 154 ~~-~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 154 ER-RKKSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHHHC--------
T ss_pred HH-Hhccccccccccccc
Confidence 21 134678889887764
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.56 E-value=3.8e-14 Score=152.85 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=83.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC---CC---------CCCC------cccceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA---KP---------AVGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~---~~---------~i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
..+|+|+|++|||||||+++|+.. -. .+.+ ....|+......+.+.+..+.++||||+.+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD-- 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT--
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc--
Confidence 348999999999999999999731 10 0111 334566666777888889999999999976
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHH
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 374 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~ 374 (423)
+...+..++..+|.+++|+|++.. ..... ..++..+.. .+.|.++|+||+|+... ....+
T Consensus 90 -----f~~~~~~~l~~aD~~ilVvDa~~g-------~~~~t-~~~~~~~~~-----~~~p~ivviNKiD~~~~~~~~~~~ 151 (691)
T 1dar_A 90 -----FTIEVERSMRVLDGAIVVFDSSQG-------VEPQS-ETVWRQAEK-----YKVPRIAFANKMDKTGADLWLVIR 151 (691)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETTTC-------SCHHH-HHHHHHHHH-----TTCCEEEEEECTTSTTCCHHHHHH
T ss_pred -----hHHHHHHHHHHCCEEEEEEECCCC-------cchhh-HHHHHHHHH-----cCCCEEEEEECCCcccCCHHHHHH
Confidence 556677888999999999999873 22333 233333433 27899999999999753 23344
Q ss_pred HHHH
Q 014494 375 ELER 378 (423)
Q Consensus 375 ~l~~ 378 (423)
.+++
T Consensus 152 ~l~~ 155 (691)
T 1dar_A 152 TMQE 155 (691)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.56 E-value=3.9e-15 Score=152.35 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=93.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCC-------------------------------CcccceecceEEEEEeCCeeE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVG-------------------------------HYSFTTLRPNLGNMNFDDIQI 284 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~-------------------------------~~~ftTl~~~~g~v~~~~~~i 284 (423)
.+|+++|++|+|||||+++|+.....+. ....+|.+.....+...+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 3799999999999999999976311110 023456666666677777899
Q ss_pred EEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHH-------HHHHHHHHHHhhhcccCCCCe
Q 014494 285 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWK-------QLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~-------~~~~l~~eL~~~~~~l~~~P~ 357 (423)
.+|||||+.+ +...+...+..+|++++|+|+++ .+++ +....+..+. .+...|.
T Consensus 87 ~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~--------gsfe~~~~~~~qt~~~~~~~~----~~~~~~i 147 (435)
T 1jny_A 87 TIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK--------GEYEAGMSVEGQTREHIILAK----TMGLDQL 147 (435)
T ss_dssp EECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST--------THHHHHHSTTCHHHHHHHHHH----HTTCTTC
T ss_pred EEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC--------CccccccccchHHHHHHHHHH----HcCCCeE
Confidence 9999999876 55566778889999999999986 2222 2222222221 1223468
Q ss_pred EEEEeCCCcCCh-------HHHHHHHHHHc---C----CCcEEEEecccCcCHHHH
Q 014494 358 LVVANKIDEDGA-------EEVYEELERRV---Q----GVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 358 IiVlNKiDl~~~-------~~~~~~l~~~~---~----~~~ii~vSA~~g~gi~eL 399 (423)
|+|+||+|+... +...+.+++.+ . ..+++++||++|+|+.++
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 899999999862 12233344332 1 367999999999999743
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.56 E-value=3.2e-16 Score=166.18 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=82.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCC-------------------------------CCCcccceecceEEEEEeCCee
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPA-------------------------------VGHYSFTTLRPNLGNMNFDDIQ 283 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~-------------------------------i~~~~ftTl~~~~g~v~~~~~~ 283 (423)
..+|+++|++|+|||||+++|++.... ....+++|.+.....+.+++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 347999999999999999999642100 0113467777777777777889
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEe
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVAN 362 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlN 362 (423)
+.|+||||+.+... .+...+..||++|+|+|++..... .+.....+....+..+.. ...| .|+|+|
T Consensus 257 i~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~g~~e-~gi~~~~qt~e~l~~~~~-----lgip~iIvviN 323 (592)
T 3mca_A 257 YEIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQNNFE-RGFLENGQTREHAYLLRA-----LGISEIVVSVN 323 (592)
T ss_dssp --CCEEESSSEEEE-------ECCC-------CCSEEEEEECCSS-TTSCSCSSHHHHHHHHHH-----SSCCCEEEEEE
T ss_pred EEEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCCCccc-cccccchHHHHHHHHHHH-----cCCCeEEEEEe
Confidence 99999999876322 223456789999999999863100 000001111222222211 2455 888999
Q ss_pred CCCcCC--hH---HHHHHHHHHc-C-------CCcEEEEecccCcCHH--------------HHHHHHHHHhc
Q 014494 363 KIDEDG--AE---EVYEELERRV-Q-------GVPIYPVCAVLEEGVP--------------ELKVGLRMLVN 408 (423)
Q Consensus 363 KiDl~~--~~---~~~~~l~~~~-~-------~~~ii~vSA~~g~gi~--------------eL~~~i~~~l~ 408 (423)
|+|+.. .. .+.+.+...+ . ..++++|||++|.|++ .|++.|..++.
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 999975 22 2334455443 1 2379999999999998 78888877654
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=3.8e-14 Score=152.87 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=85.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc---CCC---------CCCC------cccceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR---AKP---------AVGH------YSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg---~~~---------~i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
..+|+|+|++|||||||+++|+. .-. ...+ .+.+|+......+.+.+..+.++||||+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d-- 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD-- 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc--
Confidence 34899999999999999999984 211 1122 245677777778888889999999999976
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHH
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 374 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~ 374 (423)
+...+..++..+|++|+|+|+++. ..... ..++..+.. .+.|.|+|+||+|+... ....+
T Consensus 88 -----f~~~~~~~l~~aD~~llVvDa~~g-------~~~~~-~~~~~~~~~-----~~~p~ilviNK~Dl~~~~~~~~~~ 149 (693)
T 2xex_A 88 -----FTVEVERSLRVLDGAVTVLDAQSG-------VEPQT-ETVWRQATT-----YGVPRIVFVNKMDKLGANFEYSVS 149 (693)
T ss_dssp -----CCHHHHHHHHHCSEEEEEEETTTB-------SCHHH-HHHHHHHHH-----TTCCEEEEEECTTSTTCCHHHHHH
T ss_pred -----hHHHHHHHHHHCCEEEEEECCCCC-------CcHHH-HHHHHHHHH-----cCCCEEEEEECCCccccchHHHHH
Confidence 455667888999999999999873 22222 333344433 27899999999999754 23344
Q ss_pred HHHH
Q 014494 375 ELER 378 (423)
Q Consensus 375 ~l~~ 378 (423)
.+++
T Consensus 150 ~l~~ 153 (693)
T 2xex_A 150 TLHD 153 (693)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.56 E-value=4.3e-14 Score=147.84 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=80.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCC----------------CC------cccceecceEEEEEeCCeeEEEEcCCCC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAV----------------GH------YSFTTLRPNLGNMNFDDIQITVADIPGL 292 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i----------------~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~ 292 (423)
..+|+|+|++|||||||+++|+.....+ .+ ....|.......+.+.+..+.++||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3489999999999999999998642111 11 2234455555667788899999999999
Q ss_pred cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 293 IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 293 i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
.+ +.....+++..+|.+|+|+|+++.. ..+...++..+. ..+.|.|+|+||+|+...
T Consensus 93 ~d-------f~~~~~~~l~~aD~~IlVvDa~~g~--------~~~t~~~~~~~~-----~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 ED-------FSEDTYRTLTAVDCCLMVIDAAKGV--------EDRTRKLMEVTR-----LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TT-------CCHHHHHGGGGCSEEEEEEETTTCS--------CHHHHHHHHHHT-----TTTCCEEEEEECTTSCCS
T ss_pred hh-------HHHHHHHHHHHCCEEEEEEeCCccc--------hHHHHHHHHHHH-----HcCCCEEEEEcCcCCccc
Confidence 65 4455677889999999999998731 123334433332 137899999999999753
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.55 E-value=9.6e-15 Score=150.38 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=97.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCC-------------------------C------cccceecceEEEEEeCCeeEE
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVG-------------------------H------YSFTTLRPNLGNMNFDDIQIT 285 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~-------------------------~------~~ftTl~~~~g~v~~~~~~i~ 285 (423)
+|+++|.+|+|||||+++|++....+. + ....|.+.....+..++..+.
T Consensus 9 ~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~ 88 (458)
T 1f60_A 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVT 88 (458)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEE
Confidence 799999999999999999986411000 1 134566666667777788999
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHH-------HHHHHHHHHHhhhcccCCCC-e
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWK-------QLRDLIIELEHHQEGLSDRP-S 357 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~-------~~~~l~~eL~~~~~~l~~~P-~ 357 (423)
++||||+.+ +...+...+..+|++++|+|+++. ... +....+..+.. ...| .
T Consensus 89 iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g--------~~~~sf~~~~qt~~~~~~~~~-----~~v~~i 148 (458)
T 1f60_A 89 VIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVG--------EFEAGISKDGQTREHALLAFT-----LGVRQL 148 (458)
T ss_dssp EEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHH--------HHHHHTCTTSHHHHHHHHHHH-----TTCCEE
T ss_pred EEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcC--------ccccccCcchhHHHHHHHHHH-----cCCCeE
Confidence 999999864 555667778899999999999852 111 22222222211 2455 8
Q ss_pred EEEEeCCCcCC--hH---HHHHHHHHH---cC----CCcEEEEecccCcCHHHH
Q 014494 358 LVVANKIDEDG--AE---EVYEELERR---VQ----GVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 358 IiVlNKiDl~~--~~---~~~~~l~~~---~~----~~~ii~vSA~~g~gi~eL 399 (423)
|+|+||+|+.. .+ ...+.+.+. +. ..+++++||++|.|++++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 88999999983 22 222333322 21 368999999999998743
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.55 E-value=1.3e-16 Score=165.35 Aligned_cols=152 Identities=24% Similarity=0.244 Sum_probs=104.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTK 314 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad 314 (423)
.+.|+++|++++|||||+++|.+........++.|.+.....+.+++..+.+|||||+...... +.+.+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~-------~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM-------RARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS-------BCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH-------HHHHHhhCC
Confidence 4589999999999999999998754444444556655555556667788999999998764322 224467799
Q ss_pred eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH--HHHHHHHH------Hc-CCCcE
Q 014494 315 VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE--EVYEELER------RV-QGVPI 385 (423)
Q Consensus 315 ~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~--~~~~~l~~------~~-~~~~i 385 (423)
++++|+|+++... ....+.+ ..+.. .+.|.|+++||+|+...+ .+.+.+.+ .+ ...++
T Consensus 77 ~aILVVda~~g~~----~qT~e~l----~~~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 77 IVVLVVAADDGVM----PQTIEAI----QHAKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp SEEEEEETTTBSC----TTTHHHH----HHHHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred EEEEEeecccCcc----HHHHHHH----HHHHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 9999999987422 1222222 22221 378999999999997531 11111111 11 12589
Q ss_pred EEEecccCcCHHHHHHHHHHH
Q 014494 386 YPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i~~~ 406 (423)
+++||++|.|+++|+++|...
T Consensus 144 v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTTT
T ss_pred EEEeeeeccCcchhhhhhhhh
Confidence 999999999999999998653
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.55 E-value=5.3e-14 Score=151.15 Aligned_cols=127 Identities=23% Similarity=0.258 Sum_probs=88.6
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCCC------------CCC------cccceecceEEEEEeCCeeEEEEcCCCCc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKPA------------VGH------YSFTTLRPNLGNMNFDDIQITVADIPGLI 293 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~~------------i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG~i 293 (423)
+..+.+|+|+|++|||||||+++|++.... ..+ ....|..+....+.+.+..+.++||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 345568999999999999999999853221 111 12345556666777778899999999987
Q ss_pred CCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC-ChHHH
Q 014494 294 KGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED-GAEEV 372 (423)
Q Consensus 294 ~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~-~~~~~ 372 (423)
+ +.......+..+|.+++|+|+++.. ..+...++..+.. .+.|.|+|+||+|+. ...+.
T Consensus 86 ~-------f~~~~~~~l~~ad~~ilVvD~~~g~--------~~qt~~~~~~~~~-----~~ip~ilv~NKiD~~~~~~~~ 145 (665)
T 2dy1_A 86 D-------FVGEIRGALEAADAALVAVSAEAGV--------QVGTERAWTVAER-----LGLPRMVVVTKLDKGGDYYAL 145 (665)
T ss_dssp G-------GHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHHH-----TTCCEEEEEECGGGCCCHHHH
T ss_pred c-------hHHHHHHHHhhcCcEEEEEcCCccc--------chhHHHHHHHHHH-----ccCCEEEEecCCchhhhHHHH
Confidence 5 5556778889999999999987632 1333444444433 278999999999986 22344
Q ss_pred HHHHHH
Q 014494 373 YEELER 378 (423)
Q Consensus 373 ~~~l~~ 378 (423)
.+.+.+
T Consensus 146 ~~~l~~ 151 (665)
T 2dy1_A 146 LEDLRS 151 (665)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=9.7e-15 Score=154.54 Aligned_cols=155 Identities=25% Similarity=0.248 Sum_probs=96.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe------------------CCeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF------------------DDIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~------------------~~~~i~l~DtpG~i~~a 296 (423)
.+.|+++|++|+|||||+++|++...........|.......+.+ ....+.+|||||+....
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 358999999999999999999875221111001121111112211 11258999999997643
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh-------
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA------- 369 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~------- 369 (423)
... .+.+..||++++|+|+++... .+....+..+.. .+.|.|+|+||+|+...
T Consensus 85 ~~~-------~r~~~~aD~aILVvDa~~Gv~--------~qT~e~l~~l~~-----~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 85 TLR-------KRGGALADLAILIVDINEGFK--------PQTQEALNILRM-----YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp TSB-------CSSSBSCSEEEEEEETTTCCC--------HHHHHHHHHHHH-----TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred HHH-------HHHHhhCCEEEEEEECCCCcc--------HhHHHHHHHHHH-----cCCeEEEEecccccccccccccCC
Confidence 321 134567999999999987321 122222333332 37899999999999631
Q ss_pred ----------H-----------HHHHHHHHHc-------------CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 370 ----------E-----------EVYEELERRV-------------QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 370 ----------~-----------~~~~~l~~~~-------------~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
. +..+.+.+.. ...+++++||++|.|+++|+++|..+++.
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 1112222211 12379999999999999999999987753
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.54 E-value=4.8e-14 Score=134.36 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=87.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHh----
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIE---- 311 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~---- 311 (423)
+|+++|.+|||||||+|+|++... .+.+++++|..+....+.+++..+.++||||+.+.... ...+.+.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~----~~~~~~~i~~~l~ 113 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV----NHQALELIKGFLV 113 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE----CHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc----hHHHHHHHHHHHh
Confidence 799999999999999999999765 56788999999998889999999999999999875433 234444443
Q ss_pred --ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 312 --RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 312 --~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
.++++++|+|++.. ........++..+......-..+|.++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVY-------AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCS-------CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCC-------CCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 78999999888652 11122234444444332221235999999999985
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=2.3e-14 Score=154.62 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=103.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCCCC-CCcccc--------------eecc---------------------------
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKPAV-GHYSFT--------------TLRP--------------------------- 272 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~~i-~~~~ft--------------Tl~~--------------------------- 272 (423)
..+|+|+|.+|||||||+|+|++....+ +..|.| |...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 4489999999999999999999986543 444444 1110
Q ss_pred ------------eEEEEEeCC----eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHH
Q 014494 273 ------------NLGNMNFDD----IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWK 336 (423)
Q Consensus 273 ------------~~g~v~~~~----~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~ 336 (423)
..-.+.++. ..+.++||||+.+... .......++..||++|+|+|++.. ....
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~-------~s~~ 217 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP-------CTLG 217 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST-------TCHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc-------cchh
Confidence 000111111 3689999999875321 334556788999999999999863 2333
Q ss_pred HHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH---------------HHHHHHHHHc----C-------CCcEEEEec
Q 014494 337 QLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE---------------EVYEELERRV----Q-------GVPIYPVCA 390 (423)
Q Consensus 337 ~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~---------------~~~~~l~~~~----~-------~~~ii~vSA 390 (423)
....+...+.. ...|.++|+||+|+.... .+.+.+...+ . ..++++|||
T Consensus 218 e~~~l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSA 292 (695)
T 2j69_A 218 ERRYLENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSS 292 (695)
T ss_dssp HHHHHHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCH
T ss_pred HHHHHHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeC
Confidence 33333222211 267899999999986432 1111111111 1 247999999
Q ss_pred c--------------cCcCHHHHHHHHHHHhcc
Q 014494 391 V--------------LEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 391 ~--------------~g~gi~eL~~~i~~~l~~ 409 (423)
+ ++.|+++|.+.|.+.+..
T Consensus 293 k~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 293 IQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 9 999999999999887754
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=2.1e-13 Score=130.47 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=85.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHH--Hhcc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRH--IERT 313 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~--i~~a 313 (423)
+|+++|.+|+|||||+|+|++... .+.+++.+|..+....+...+..+.++||||+.+.......+...+..+ ...+
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 120 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTI 120 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCC
Confidence 799999999999999999998764 4677888888887777888889999999999976433222111122122 1368
Q ss_pred ceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh
Q 014494 314 KVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 314 d~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~ 369 (423)
|++++|+|++.. ........++..+......-...|.|+|+||+|+...
T Consensus 121 d~il~v~~~d~~-------~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 121 DVLLYVDRLDAY-------RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEEEEEEESSCC-------CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CEEEEEEeCCCC-------cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 999999988641 1111222444444332111113699999999999753
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.53 E-value=3.7e-14 Score=157.35 Aligned_cols=154 Identities=22% Similarity=0.200 Sum_probs=100.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-----C-----------CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-----A-----------VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHEN 299 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-----~-----------i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~ 299 (423)
.+|+++|++|+|||||+++|++... . .......|.+.....+...+..+.++||||+.+
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed----- 371 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD----- 371 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH-----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH-----
Confidence 4799999999999999999987310 0 011223444443334455568999999999875
Q ss_pred ccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeCCCcCChHHH----HH
Q 014494 300 RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANKIDEDGAEEV----YE 374 (423)
Q Consensus 300 ~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNKiDl~~~~~~----~~ 374 (423)
+.......+..+|++|+|+|+++... .+...++..+.. .+.| .|+|+||+|+....+. .+
T Consensus 372 --F~~~mi~gas~AD~aILVVDAtdGv~--------~QTrEhL~ll~~-----lgIP~IIVVINKiDLv~d~e~le~i~e 436 (1289)
T 3avx_A 372 --YVKNMITGAAQMDGAILVVAATDGPM--------PQTREHILLGRQ-----VGVPYIIVFLNKCDMVDDEELLELVEM 436 (1289)
T ss_dssp --HHHHHHHTSCCCSEEEEEEETTTCSC--------TTHHHHHHHHHH-----HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred --HHHHHHHHHhhCCEEEEEEcCCccCc--------HHHHHHHHHHHH-----cCCCeEEEEEeecccccchhhHHHHHH
Confidence 44455667788999999999987421 122223333322 2678 6888999999863322 22
Q ss_pred HHHHHc-------CCCcEEEEecccC--------cCHHHHHHHHHHHhcc
Q 014494 375 ELERRV-------QGVPIYPVCAVLE--------EGVPELKVGLRMLVNG 409 (423)
Q Consensus 375 ~l~~~~-------~~~~ii~vSA~~g--------~gi~eL~~~i~~~l~~ 409 (423)
.+.+.+ ...+++++||++| .|+++|++.|.+.++.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 232222 1368999999999 5799999999887764
No 182
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=3.8e-14 Score=141.23 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 280 DDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 280 ~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
.+..++|+||||+.. .....+..+|++++|+|.+.... . + .+...+...|.++
T Consensus 170 ~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~-------~---~-------~l~~~~~~~p~iv 222 (355)
T 3p32_A 170 AGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQ-------L---Q-------GIKKGVLELADIV 222 (355)
T ss_dssp TTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCT-------T---T-------TCCTTSGGGCSEE
T ss_pred CCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCcc-------H---H-------HHHHhHhhcCCEE
Confidence 457899999999754 12234588999999999765211 1 0 0111234579999
Q ss_pred EEeCCCcCChHH---HHHHHHHHc---C------CCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 360 VANKIDEDGAEE---VYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 360 VlNKiDl~~~~~---~~~~l~~~~---~------~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
|+||+|+..... ..+.+.+.+ . ..++++|||++++|+++|+++|.+.+..
T Consensus 223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 223 VVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999999975432 233343331 1 4689999999999999999999988765
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.52 E-value=2.6e-13 Score=146.60 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC---CC---------CCC------cccceecceEEEEEeCC-------eeEEEEc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK---PA---------VGH------YSFTTLRPNLGNMNFDD-------IQITVAD 288 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~---~~---------i~~------~~ftTl~~~~g~v~~~~-------~~i~l~D 288 (423)
...+|+|+|+.|+|||||+++|+... .. ..+ ....|+......+.+.+ ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45689999999999999999996421 11 111 12345544555566666 8899999
Q ss_pred CCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCC
Q 014494 289 IPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDG 368 (423)
Q Consensus 289 tpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~ 368 (423)
|||+.+ +.......+..||.+|+|+|++.. ...+...++..+.. .+.|.++|+||+|+..
T Consensus 89 TPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVD-------FTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccc-------hHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHH-----cCCCEEEEEeCCCccc
Confidence 999976 445566788899999999999873 12223333333322 3789999999999875
Q ss_pred h
Q 014494 369 A 369 (423)
Q Consensus 369 ~ 369 (423)
.
T Consensus 149 ~ 149 (704)
T 2rdo_7 149 A 149 (704)
T ss_pred c
Confidence 4
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.52 E-value=1.3e-14 Score=149.86 Aligned_cols=152 Identities=22% Similarity=0.187 Sum_probs=84.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCC-------------------------CC------cccceecceEEEEEeCCeeE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAV-------------------------GH------YSFTTLRPNLGNMNFDDIQI 284 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i-------------------------~~------~~ftTl~~~~g~v~~~~~~i 284 (423)
.+|+++|++|+|||||+++|+.....+ .+ ....|++.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 379999999999999999997421110 01 23455555555677778899
Q ss_pred EEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC-eEEEEeC
Q 014494 285 TVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP-SLVVANK 363 (423)
Q Consensus 285 ~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P-~IiVlNK 363 (423)
.+|||||+.+ +...+...+..+|++|+|+|+++...... .....+....+..+. ....| .|+|+||
T Consensus 124 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~s-f~~~~qt~e~l~~~~-----~~~vp~iivviNK 190 (467)
T 1r5b_A 124 SLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAG-FERGGQTREHAVLAR-----TQGINHLVVVINK 190 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTTHHHHT-TSTTCCHHHHHHHHH-----HTTCSSEEEEEEC
T ss_pred EEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccc-cCCCCcHHHHHHHHH-----HcCCCEEEEEEEC
Confidence 9999999865 44455667788999999999986310000 000011122222221 13566 8899999
Q ss_pred CCcCC----hH---HH----HHHHHHH--cC---CCcEEEEecccCcCHHHHH
Q 014494 364 IDEDG----AE---EV----YEELERR--VQ---GVPIYPVCAVLEEGVPELK 400 (423)
Q Consensus 364 iDl~~----~~---~~----~~~l~~~--~~---~~~ii~vSA~~g~gi~eL~ 400 (423)
+|+.. .+ .. .+.+... +. +.+++++||++|.|+++++
T Consensus 191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99964 11 12 2222232 11 4579999999999998744
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=1.6e-13 Score=144.08 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=91.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC----------------CCCCC------cccceecceEEEEEeCCeeEEEEcCCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK----------------PAVGH------YSFTTLRPNLGNMNFDDIQITVADIPG 291 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~----------------~~i~~------~~ftTl~~~~g~v~~~~~~i~l~DtpG 291 (423)
...+|||||+.++|||||..+|.-.. ..+.+ ....|+....-.+.|.+..+.|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 34489999999999999999984210 01222 235677777888899999999999999
Q ss_pred CcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--
Q 014494 292 LIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA-- 369 (423)
Q Consensus 292 ~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~-- 369 (423)
+.+ +.....+.+.-+|.+|+|+|+... ...+...++..+..+ +.|.|+++||+|....
T Consensus 110 HvD-------F~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 110 HQD-------FSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMR-----ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp GGG-------CSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCCCH
T ss_pred cHH-------HHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHh-----CCceEEEEecccchhcch
Confidence 987 666777889999999999999974 335566666666554 7999999999998754
Q ss_pred HHHHHHHHH
Q 014494 370 EEVYEELER 378 (423)
Q Consensus 370 ~~~~~~l~~ 378 (423)
...++.+++
T Consensus 170 ~~~~~~i~~ 178 (548)
T 3vqt_A 170 LDVMADIEQ 178 (548)
T ss_dssp HHHHHHHHH
T ss_pred hHhhhhhhh
Confidence 344444443
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=4.9e-14 Score=140.76 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=72.9
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCccc-------ceecceE--EEEEeCC--eeEEEEcCCCCcCCcc---ccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYSF-------TTLRPNL--GNMNFDD--IQITVADIPGLIKGAH---ENRGL 302 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~f-------tTl~~~~--g~v~~~~--~~i~l~DtpG~i~~a~---~~~~l 302 (423)
+|+|||.+|+|||||+++|++.......+.. .|..... ..+...+ ..+.+|||||+..... ....+
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i 118 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 118 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHH
Confidence 6799999999999999999887554433311 2222221 2222333 3789999999944221 01122
Q ss_pred h----HHHHHHHhcc-------------ceeEEEEecCCCCCCCCCCCcHHHHH-HHHHHHHhhhcccCCCCeEEEEeCC
Q 014494 303 G----HAFLRHIERT-------------KVLAYVVDLASGLDGRKGIKPWKQLR-DLIIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 303 ~----~~fl~~i~~a-------------d~ll~VvD~s~~~~~~~~~~~~~~~~-~l~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
. .+|..++..+ ++++++++.+. .++.... .++..+ . ...|+|+|+||+
T Consensus 119 ~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~--------~~l~~~d~~~~~~l---~---~~~piIlV~NK~ 184 (361)
T 2qag_A 119 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG--------HGLKPLDVAFMKAI---H---NKVNIVPVIAKA 184 (361)
T ss_dssp HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS--------SSCCHHHHHHHHHT---C---S-SCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC--------CCcchhHHHHHHHh---c---cCCCEEEEEECC
Confidence 2 2333344333 35677776532 1111222 233332 1 368999999999
Q ss_pred CcCChHHHH---HHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 365 DEDGAEEVY---EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 365 Dl~~~~~~~---~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
|+....++. +.+.+.. .+.+++++||+++.+ ++.+..+.+.+
T Consensus 185 Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 185 DTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 998866543 2444444 356889999999988 55544444433
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.49 E-value=4.3e-14 Score=140.96 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=95.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEE--------------------------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLG-------------------------------------- 275 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g-------------------------------------- 275 (423)
..+.|+|||.+|||||||+|+|++..........+|..|..-
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999653221111111111100
Q ss_pred --------------EE--Ee-CCeeEEEEcCCCCcCCccc--c----ccchHHHHHHHhccceeEEEEecCCCCCCCCCC
Q 014494 276 --------------NM--NF-DDIQITVADIPGLIKGAHE--N----RGLGHAFLRHIERTKVLAYVVDLASGLDGRKGI 332 (423)
Q Consensus 276 --------------~v--~~-~~~~i~l~DtpG~i~~a~~--~----~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~ 332 (423)
.+ .. ....+.++||||+.+.... . ..+......++..++++++|+|.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~------ 186 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD------ 186 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC------
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC------
Confidence 11 11 1256899999999875321 1 112344567889999999999876421
Q ss_pred CcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHH-HHHHHHHc--CCCcEEEEecccCcCHHHHHHH
Q 014494 333 KPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEV-YEELERRV--QGVPIYPVCAVLEEGVPELKVG 402 (423)
Q Consensus 333 ~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~-~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~ 402 (423)
........+..++ .+ ...|+|+|+||+|+...... .+.+.... .+.+++++|+.++.++++.+..
T Consensus 187 ~~~~~~~~l~~~~---~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 187 LATSDAIKISREV---DP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGGCHHHHHHHHS---CT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred cCCHHHHHHHHHh---cc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 1111222222222 22 36799999999999764322 22222211 3467899999999888765443
No 188
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-13 Score=124.09 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhcc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERT 313 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~a 313 (423)
...+|+++|.+|||||||+++|++...... ..+..++... .+....+.+|||||+...... +...+...+..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~ 119 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYK---LSDYLKTRAKFV 119 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCC---HHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eecCCeEEEEECCCCchHHHH---HHHHHHhhcccC
Confidence 345899999999999999999998753220 1111222211 224578999999998763321 222333445568
Q ss_pred ceeEEEEecC-CCCCCCCCCCcHHHHHHHHHHHHhhhc--ccCCCCeEEEEeCCCcCCh
Q 014494 314 KVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQE--GLSDRPSLVVANKIDEDGA 369 (423)
Q Consensus 314 d~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~--~l~~~P~IiVlNKiDl~~~ 369 (423)
|++++|+|++ + ..++.....++.++..... .....|+++|+||+|+...
T Consensus 120 ~~~i~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 120 KGLIFMVDSTVD-------PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEETTCC-------HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCCC-------chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 9999999998 3 2344444444444432211 1237899999999999754
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.48 E-value=1.9e-14 Score=143.26 Aligned_cols=160 Identities=17% Similarity=0.231 Sum_probs=94.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCC------CCCccc----------------------ceecc-------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPA------VGHYSF----------------------TTLRP------------- 272 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~------i~~~~f----------------------tTl~~------------- 272 (423)
..+.|++||.+|||||||+|+|++.+.. +...|. +|.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999997542 122232 22210
Q ss_pred --------eE--EEEEeC-CeeEEEEcCCCCcCCccc--cc----cchHHHHHHHhcc-ceeEEEEecCCCCCCCCCCCc
Q 014494 273 --------NL--GNMNFD-DIQITVADIPGLIKGAHE--NR----GLGHAFLRHIERT-KVLAYVVDLASGLDGRKGIKP 334 (423)
Q Consensus 273 --------~~--g~v~~~-~~~i~l~DtpG~i~~a~~--~~----~l~~~fl~~i~~a-d~ll~VvD~s~~~~~~~~~~~ 334 (423)
.. -.+... ...+.++||||+...... .. .+......++..+ +++++|+|++.... .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~------~ 183 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------N 183 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG------G
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc------h
Confidence 00 011112 367999999999763321 11 1223334455444 56666777654211 1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-HHHHHHHHc-C---C-CcEEEEecccCcCHHHHHHHHHH
Q 014494 335 WKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-VYEELERRV-Q---G-VPIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 335 ~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-~~~~l~~~~-~---~-~~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
.....++.++ .+ ...|.|+|+||+|+..... ..+.+.... + + .+++++||+++.|+++|++.+.+
T Consensus 184 -~~~~~i~~~~---~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 184 -SDALKVAKEV---DP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -CHHHHHHHHH---CT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -hHHHHHHHHh---Cc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 1112233333 11 3689999999999976432 122222211 1 1 35788999999999999998876
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=3.4e-14 Score=140.65 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=94.0
Q ss_pred eeeccCCCeEEEECCCCCcHHHHHHHHHcC------CCCC-CCccccee-----------------cceEEE--------
Q 014494 229 ILELKSIADVGLVGMPSAGKSTLLGAISRA------KPAV-GHYSFTTL-----------------RPNLGN-------- 276 (423)
Q Consensus 229 ~lelk~~~~V~LVG~~naGKSTLLn~Lsg~------~~~i-~~~~ftTl-----------------~~~~g~-------- 276 (423)
++++..+..|+|+|+||||||||+++|++. +..+ +..+.++. ++..-.
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence 344556668999999999999999999853 2211 11111110 011100
Q ss_pred --------------EEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHH
Q 014494 277 --------------MNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLI 342 (423)
Q Consensus 277 --------------v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~ 342 (423)
+...+..++|+||||+.... ....+.+|++++|+|.+.. + ..+.+
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~-------~---~~~~i- 187 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAG-------D---ELQGI- 187 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC----------------C-
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCc-------c---cHHHH-
Confidence 11246789999999986521 1234789999999998642 1 11101
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCcCChHH----HHHHHHHHc---C------CCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 343 IELEHHQEGLSDRPSLVVANKIDEDGAEE----VYEELERRV---Q------GVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 343 ~eL~~~~~~l~~~P~IiVlNKiDl~~~~~----~~~~l~~~~---~------~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
...+...|.++|+||+|+..... ..+.+.... . ..+++++||+++.|+++|++.|.+.+.
T Consensus 188 ------~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 188 ------KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00111347789999999754222 123333221 2 357999999999999999999988775
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.46 E-value=5.1e-14 Score=151.83 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=100.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecce---------------------------------------
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN--------------------------------------- 273 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~--------------------------------------- 273 (423)
-..+.|++||.+|||||||+|+|++..........+|..|.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 35679999999999999999999997542211112222221
Q ss_pred ------------EEEEEeCC-eeEEEEcCCCCcCCccc--cc----cchHHHHHHH-hccceeEEEEecCCCCCCCCCCC
Q 014494 274 ------------LGNMNFDD-IQITVADIPGLIKGAHE--NR----GLGHAFLRHI-ERTKVLAYVVDLASGLDGRKGIK 333 (423)
Q Consensus 274 ------------~g~v~~~~-~~i~l~DtpG~i~~a~~--~~----~l~~~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~ 333 (423)
.-.+..++ ..++|+||||+...... .. .+......++ ..+|++++|+|++....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~------ 202 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA------ 202 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS------
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc------
Confidence 11122222 46899999999873311 11 1222233344 46899999999987321
Q ss_pred cHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHH--Hc----CCCcEEEEecccCcCHHHHHHHHHH
Q 014494 334 PWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELER--RV----QGVPIYPVCAVLEEGVPELKVGLRM 405 (423)
Q Consensus 334 ~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~--~~----~~~~ii~vSA~~g~gi~eL~~~i~~ 405 (423)
. .....+..++.. ...|.|+|+||+|+.........+.. .+ ...+++++||+++.|+++|.+.|.+
T Consensus 203 ~-~d~l~ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 203 N-SDALKIAKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp S-CHHHHHHHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred h-hHHHHHHHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 1 112233344422 36899999999999865332222221 11 1236789999999999999999886
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=6.7e-14 Score=138.66 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=91.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC------CCC-CCCcccceec-----------------ceEEE------------
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA------KPA-VGHYSFTTLR-----------------PNLGN------------ 276 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~------~~~-i~~~~ftTl~-----------------~~~g~------------ 276 (423)
.....|+++|+||||||||+++|++. +.. +...+++|.. +..-.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 34558999999999999999999743 111 1111222110 00000
Q ss_pred ----------EEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHH
Q 014494 277 ----------MNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELE 346 (423)
Q Consensus 277 ----------v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~ 346 (423)
+.+.+..+.++||||+..... .....+|++++|+|++.... .+.+...
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~----------~~~l~~~-- 191 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDD----------LQGIKKG-- 191 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC----------------CCCCHH--
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHH----------HHHHHHh--
Confidence 013457899999999865211 13578999999999875211 0000000
Q ss_pred hhhcccCCCCeEEEEeCCCcCChHHH---HHHHHH---HcC------CCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 347 HHQEGLSDRPSLVVANKIDEDGAEEV---YEELER---RVQ------GVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 347 ~~~~~l~~~P~IiVlNKiDl~~~~~~---~~~l~~---~~~------~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
..+.|.++|+||+|+...... .+.+++ .+. ..++++|||+++.|+++|++.|.+.+.
T Consensus 192 -----~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 192 -----LMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----hhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 014689999999999875332 223433 222 346899999999999999999988765
No 193
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.46 E-value=3.2e-13 Score=132.34 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=99.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccce
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKV 315 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ 315 (423)
+|.|+|..|||||||++.+.+.... .......|.......+. ....+.+|||+|+.+.... .+ ....+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP--SY--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch--hh--hhhhhccCCCE
Confidence 4789999999999999988764221 11112234444333332 2378999999999874210 01 22456789999
Q ss_pred eEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH-------HHHHHHHHc-C------
Q 014494 316 LAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE-------VYEELERRV-Q------ 381 (423)
Q Consensus 316 ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~-------~~~~l~~~~-~------ 381 (423)
+++|+|+++.. ......+..++.++.... .+.|.++|+||+|+...++ +.....+.+ .
T Consensus 76 ~IlV~Ditd~~-----~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 76 LVYVIDSQDEY-----INAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp EEEECCCSSCT-----THHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred EEEEEECCchH-----HHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence 99999998721 122333334444443332 3789999999999986532 222222222 2
Q ss_pred CCcEEEEecccCcCHHHHHHHHHHHh
Q 014494 382 GVPIYPVCAVLEEGVPELKVGLRMLV 407 (423)
Q Consensus 382 ~~~ii~vSA~~g~gi~eL~~~i~~~l 407 (423)
+.+++.+||++ .+|.+.+..|.+.+
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred CceEEEeccCC-CcHHHHHHHHHHHH
Confidence 35789999997 58999888776554
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.39 E-value=1.4e-12 Score=136.95 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=83.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCCC---CCCcccceecceEE-----------------------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKPA---VGHYSFTTLRPNLG----------------------------------- 275 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~~---i~~~~ftTl~~~~g----------------------------------- 275 (423)
..+.|+|+|.+|||||||+|+|++.+.. ++..+.|+.....-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4568999999999999999999998753 56666654311100
Q ss_pred -EEEeCC---eeEEEEcCCCCcCCcc--cccc--chHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHh
Q 014494 276 -NMNFDD---IQITVADIPGLIKGAH--ENRG--LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEH 347 (423)
Q Consensus 276 -~v~~~~---~~i~l~DtpG~i~~a~--~~~~--l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~ 347 (423)
.+.+++ ..+.++||||+..... .... +.......+..+|++++|+|++.. ........++..+..
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~-------~~~~~~~~~l~~l~~ 216 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL-------EISDEFSEAIGALRG 216 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC-------CCCHHHHHHHHHTTT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC-------CCCHHHHHHHHHHHh
Confidence 001111 3689999999986322 1222 234445678899999999999762 223344445444422
Q ss_pred hhcccCCCCeEEEEeCCCcCChHHHH
Q 014494 348 HQEGLSDRPSLVVANKIDEDGAEEVY 373 (423)
Q Consensus 348 ~~~~l~~~P~IiVlNKiDl~~~~~~~ 373 (423)
...|.++|+||+|+...+++.
T Consensus 217 -----~~~pvilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 217 -----HEDKIRVVLNKADMVETQQLM 237 (550)
T ss_dssp -----CGGGEEEEEECGGGSCHHHHH
T ss_pred -----cCCCEEEEEECCCccCHHHHH
Confidence 257999999999999766543
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=1.4e-12 Score=119.93 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=91.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC---C---CCCcccceecc------eEEEEE--------------------eCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP---A---VGHYSFTTLRP------NLGNMN--------------------FDD 281 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~---~---i~~~~ftTl~~------~~g~v~--------------------~~~ 281 (423)
..+.|+++|++|||||||+++|++... . +...++++.+. ....+. ..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 456899999999999999999986411 1 11111211111 000111 123
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+.++||+|+...... + ...++.+++|+|++.. .. ..... ... ...|.++|+
T Consensus 109 ~d~iiidt~G~~~~~~~---~-------~~~~~~~i~vvd~~~~-------~~--~~~~~---~~~-----~~~~~iiv~ 161 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---F-------DLGENYRVVMVSVTEG-------DD--VVEKH---PEI-----FRVADLIVI 161 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---C-------CCSCSEEEEEEEGGGC-------TT--HHHHC---HHH-----HHTCSEEEE
T ss_pred CCEEEEeCCCCCCCCch---h-------ccccCcEEEEEeCCCc-------ch--hhhhh---hhh-----hhcCCEEEE
Confidence 56788999885221100 0 0135678999998763 11 11111 111 257999999
Q ss_pred eCCCcCCh-----HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 362 NKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 362 NKiDl~~~-----~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
||+|+... .+..+.+.+..+..+++++||+++.|+++++++|.+.+..+.
T Consensus 162 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 162 NKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp ECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred ecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 99998532 334445555444578999999999999999999998887654
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=8e-13 Score=141.33 Aligned_cols=157 Identities=20% Similarity=0.339 Sum_probs=115.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHH---cCCCC---------CCCcc------cceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 235 IADVGLVGMPSAGKSTLLGAIS---RAKPA---------VGHYS------FTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Ls---g~~~~---------i~~~~------ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
+.+|+|||+..+|||||..+|. |.-.. ..++. ..|+....-.+.|.+..+.|+||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~D-- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMD-- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHH--
Confidence 4589999999999999999984 33111 12221 3466666667788899999999999987
Q ss_pred cccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh--HHHHH
Q 014494 297 HENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA--EEVYE 374 (423)
Q Consensus 297 ~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~--~~~~~ 374 (423)
+.....+.+.-+|.+|+|+|+.... ..+.+.++..+..+ +.|.|+++||+|.... ...++
T Consensus 80 -----F~~Ev~raL~~~DgavlVVDa~~GV--------~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~~~~~~~ 141 (638)
T 3j25_A 80 -----FLAEVYRSLSVLDGAILLISAKDGV--------QAQTRILFHALRKM-----GIPTIFFINKIDQNGIDLSTVYQ 141 (638)
T ss_dssp -----THHHHHHHHTTCSEEECCEESSCTT--------CSHHHHHHHHHHHH-----TCSCEECCEECCSSSCCSHHHHH
T ss_pred -----HHHHHHHHHHHhCEEEEEEeCCCCC--------cHHHHHHHHHHHHc-----CCCeEEEEeccccccCCHHHHHH
Confidence 6667778899999999999998742 23445566665554 6899999999998643 22333
Q ss_pred HHHHHc---------------------------------------------------------------CCCcEEEEecc
Q 014494 375 ELERRV---------------------------------------------------------------QGVPIYPVCAV 391 (423)
Q Consensus 375 ~l~~~~---------------------------------------------------------------~~~~ii~vSA~ 391 (423)
.+++.+ .-.|+++.||+
T Consensus 142 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~ 221 (638)
T 3j25_A 142 DIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAK 221 (638)
T ss_dssp HHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCST
T ss_pred HHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccc
Confidence 332221 12478889999
Q ss_pred cCcCHHHHHHHHHHHhcccc
Q 014494 392 LEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 392 ~g~gi~eL~~~i~~~l~~~~ 411 (423)
++.|++.|++.|.+.++...
T Consensus 222 ~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 222 SNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp TCCSHHHHHHHHHHSCCCSG
T ss_pred cCCCchhHhhhhhccccCcc
Confidence 99999999999999887543
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.35 E-value=6.3e-12 Score=118.77 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=73.5
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..++++||||+.+..... .++..+..++.. +++++|+|++.. ..+......+...+... .....|.++|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~------~~~~~~~~~~~~~~~~~--~~~~~p~~iv~ 178 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEIL------KKPNDYCFVRFFALLID--LRLGATTIPAL 178 (262)
T ss_dssp CSEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGC------CSHHHHHHHHHHHHHHH--HHHTSCEEEEE
T ss_pred CCEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhh------cCHHHHHHHHHHHHHHh--cccCCCeEEEE
Confidence 479999999987633221 123444455656 899999998752 12222221111111100 11268999999
Q ss_pred eCCCcCChHHH---HHH----------H------------------HHHcCCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 362 NKIDEDGAEEV---YEE----------L------------------ERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 362 NKiDl~~~~~~---~~~----------l------------------~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
||+|+....+. .+. + .+.....+++++||++++|+++|+++|.+.+..
T Consensus 179 NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 179 NKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 99999865321 111 1 222233479999999999999999999988764
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=7.7e-12 Score=121.73 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=73.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCC-CCccc------ceec-ceEEEEE-eCC--eeEEEEcCCCCcCCcc---ccccc
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAV-GHYSF------TTLR-PNLGNMN-FDD--IQITVADIPGLIKGAH---ENRGL 302 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i-~~~~f------tTl~-~~~g~v~-~~~--~~i~l~DtpG~i~~a~---~~~~l 302 (423)
+|+|||++|||||||+++|++..... ...++ .|.. ...+.+. ..+ ..+.++||+|+..... ....+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 56999999999999999998862221 11111 1111 1112221 122 5789999999843211 01112
Q ss_pred hH----HHHHHHhc-------------cceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 303 GH----AFLRHIER-------------TKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 303 ~~----~fl~~i~~-------------ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
.. .+..++.. +++++++++.+.. +.++.. ..++..+ . ...|.++|+||.|
T Consensus 100 ~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-----~Ld~~~--~~~l~~l---~---~~~~iilV~~K~D 166 (301)
T 2qnr_A 100 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-----GLKPLD--VAFMKAI---H---NKVNIVPVIAKAD 166 (301)
T ss_dssp HHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-----SCCHHH--HHHHHHH---T---TTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-----CCCHHH--HHHHHHH---H---hcCCEEEEEEeCC
Confidence 21 11122222 2335666654331 123332 1233322 1 2569999999999
Q ss_pred cCChHHH---HHHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 366 EDGAEEV---YEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 366 l~~~~~~---~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
+....+. .+.+.+.. .+.+++.+||+++ |+++++..+.+.+.+.
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 9875432 12222222 3578999999999 9999998888776543
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.25 E-value=9e-11 Score=126.98 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=81.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHH---cC-----CC----CCCC------cccceecceEEEEEeC-------CeeEEEE
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAIS---RA-----KP----AVGH------YSFTTLRPNLGNMNFD-------DIQITVA 287 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Ls---g~-----~~----~i~~------~~ftTl~~~~g~v~~~-------~~~i~l~ 287 (423)
..+.+|+|||+..+|||||..+|. |. +. ...+ ....|+....-.+.|. ++.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 345589999999999999999984 21 11 1111 2234555555556654 4789999
Q ss_pred cCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC
Q 014494 288 DIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED 367 (423)
Q Consensus 288 DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~ 367 (423)
||||+.+ +.....+.++-||.+|+|||+... ...+.+.++.++..+ +.|.|+++||+|..
T Consensus 91 DTPGHvD-------F~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVD-------FTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTT-------CHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred eCCCCcc-------cHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence 9999987 666777889999999999999874 335556666666554 78999999999986
Q ss_pred C
Q 014494 368 G 368 (423)
Q Consensus 368 ~ 368 (423)
.
T Consensus 151 ~ 151 (709)
T 4fn5_A 151 G 151 (709)
T ss_dssp T
T ss_pred C
Confidence 4
No 200
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.24 E-value=1.2e-11 Score=136.09 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=77.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCC----------C------CcccceecceEEEEEeC----------------Cee
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAV----------G------HYSFTTLRPNLGNMNFD----------------DIQ 283 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i----------~------~~~ftTl~~~~g~v~~~----------------~~~ 283 (423)
.+|+|+|++|+|||||+++|+.....+ . .....|+......+.+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 489999999999999999997631111 0 11233444444455553 478
Q ss_pred EEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC
Q 014494 284 ITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK 363 (423)
Q Consensus 284 i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK 363 (423)
+.++||||+.+ +......++..+|.+|+|+|+++. ...... .++..+.. .+.|.|+|+||
T Consensus 100 i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g-------~~~qt~-~~~~~~~~-----~~~p~ilviNK 159 (842)
T 1n0u_A 100 INLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEG-------VCVQTE-TVLRQALG-----ERIKPVVVINK 159 (842)
T ss_dssp EEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTB-------SCHHHH-HHHHHHHH-----TTCEEEEEEEC
T ss_pred EEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCC-------CCHHHH-HHHHHHHH-----cCCCeEEEEEC
Confidence 99999999987 445567888999999999999873 223332 23333322 26899999999
Q ss_pred CCcC
Q 014494 364 IDED 367 (423)
Q Consensus 364 iDl~ 367 (423)
+|+.
T Consensus 160 ~D~~ 163 (842)
T 1n0u_A 160 VDRA 163 (842)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 9986
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=6.4e-11 Score=109.18 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCeEEEEeCCCcCCh-----HHHHHHHHHHcCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 354 DRPSLVVANKIDEDGA-----EEVYEELERRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 354 ~~P~IiVlNKiDl~~~-----~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
..|.++|+||+|+... .+..+.+.+..+..+++++||+++.|+++|++.|.+.+..+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 5799999999998643 23333444443467899999999999999999998877543
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=4.2e-11 Score=121.51 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCCCCCcc-------cceecceEEEE-EeCC--eeEEEEcCCCCcCCccccc---cc-
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPAVGHYS-------FTTLRPNLGNM-NFDD--IQITVADIPGLIKGAHENR---GL- 302 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~-------ftTl~~~~g~v-~~~~--~~i~l~DtpG~i~~a~~~~---~l- 302 (423)
.|+|||++|||||||+++|++.......+. .++.....+.+ ...+ ..+.++||+|+........ .+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~ 112 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI 112 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHH
Confidence 469999999999999999999754322211 11111111211 1122 3689999999965321100 00
Q ss_pred ---hHHHHHHH-----------h--ccceeEEEEecC-CCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 303 ---GHAFLRHI-----------E--RTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 303 ---~~~fl~~i-----------~--~ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
...+..++ . +++++|++++.+ .. .++.+ ..++..|. ...|+|+|+||+|
T Consensus 113 ~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~------L~~~d--~~~lk~L~------~~v~iIlVinK~D 178 (418)
T 2qag_C 113 DYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG------LKPLD--IEFMKRLH------EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS------CCHHH--HHHHHHHT------TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC------CCHHH--HHHHHHHh------ccCcEEEEEEccc
Confidence 00111111 1 134466666554 22 12322 23444442 2689999999999
Q ss_pred cCChHHHH---HHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 366 EDGAEEVY---EELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 366 l~~~~~~~---~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+....++. +.+.+.+ .+.+++.+||.++.++++++..+...++
T Consensus 179 ll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred CccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 98765432 2222222 2578899999999999988877776554
No 203
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.12 E-value=3e-10 Score=114.95 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=91.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CCCccc----ceecceEEEEEeCC--eeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VGHYSF----TTLRPNLGNMNFDD--IQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~f----tTl~~~~g~v~~~~--~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
.|+|+|+||||||||+|+|+|.... .+.... +|. .+.+.... ..++++|+||+... ......++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~---~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~ 143 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM---ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEK 143 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C---CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce---eEEeccccccCCeeehHhhcccch----HHHHHHHHHH
Confidence 8999999999999999999996322 111111 111 12332222 36899999998532 1123344443
Q ss_pred Hh--ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcC------------ChHHHHHH
Q 014494 310 IE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDED------------GAEEVYEE 375 (423)
Q Consensus 310 i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~------------~~~~~~~~ 375 (423)
+. ..+..+. ++... ...+...+...+.. ..+|.++|+||.|+. ...++++.
T Consensus 144 ~~L~~~~~~~~-lS~G~---------~~kqrv~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATR---------FKKNDIDIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp TTGGGCSEEEE-EESSC---------CCHHHHHHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cCCCccCCeEE-eCCCC---------ccHHHHHHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHH
Confidence 32 2333333 44331 11222233333322 268999999998864 33444554
Q ss_pred HHHH---------cCCCcEEEEecc--cCcCHHHHHHHHHHHhccccC
Q 014494 376 LERR---------VQGVPIYPVCAV--LEEGVPELKVGLRMLVNGEKS 412 (423)
Q Consensus 376 l~~~---------~~~~~ii~vSA~--~g~gi~eL~~~i~~~l~~~~~ 412 (423)
+++. .+...+|++|++ .+.|+++|++.|.+.+++.+.
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 4443 123478999994 556799999999999987654
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=1.7e-11 Score=122.72 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=97.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC------CCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA------KPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRH 309 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~------~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~ 309 (423)
.+|+++|.+|+|||||+|+|++. ...++++|+||....... +. ..+.++||||+.........+...++.+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 456788999998765433 33 3589999999987654444566667777
Q ss_pred H---hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCCC
Q 014494 310 I---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQGV 383 (423)
Q Consensus 310 i---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~~ 383 (423)
+ .+.+.++++++...... ...+.. +. +. .-...|.++++||+|.... +...+.+++.+ +.
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~-------~g~l~~----l~-~l-~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~-g~ 305 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLF-------FGGLAR----LD-YI-KGGRRSFVCYMANELTVHRTKLEKADSLYANQL-GE 305 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEE-------ETTTEE----EE-EE-ESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHB-TT
T ss_pred HhcccccCceEEEEcCCceEE-------ECCEEE----EE-Ec-cCCCceEEEEecCCcccccccHHHHHHHHHHhc-CC
Confidence 7 78899999999843100 000000 00 00 1135799999999998653 33455566665 34
Q ss_pred cEEEEecccCcCHH
Q 014494 384 PIYPVCAVLEEGVP 397 (423)
Q Consensus 384 ~ii~vSA~~g~gi~ 397 (423)
.+.+.++....++.
T Consensus 306 ~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 306 LLSPPSKRYAAEFP 319 (369)
T ss_dssp TBCSSCGGGTTTCC
T ss_pred ccCCCCchhhhhcc
Confidence 56666665555443
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=6.3e-11 Score=118.48 Aligned_cols=143 Identities=20% Similarity=0.170 Sum_probs=87.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC-------CCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHH
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA-------KPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLR 308 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~-------~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~ 308 (423)
.+|+++|.+|+|||||+|+|++. ...++++|+||....... +. ..+.++||||+.........+....+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 47999999999999999999885 234688999997765533 33 248999999998754434445556665
Q ss_pred H---HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCCh---HHHHHHHHHHcCC
Q 014494 309 H---IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGA---EEVYEELERRVQG 382 (423)
Q Consensus 309 ~---i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~---~~~~~~l~~~~~~ 382 (423)
+ ....+.++++++...... ...+.. +..+ .-...|.++++||+|.... +...+.+++.+ +
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~-------~g~l~~-~d~l-----~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~-g 303 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLF-------FSGLAR-FDYV-----SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHA-G 303 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEE-------ETTTEE-EEEE-----ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHB-T
T ss_pred HhccccccCceEEEEcCCCEEE-------EcceEE-EEEe-----cCCCceEEEEecCccccccccHHHHHHHHHHHh-C
Confidence 5 345678888888742100 000000 0000 1125799999999998754 34455566665 3
Q ss_pred CcEEEEecccCcC
Q 014494 383 VPIYPVCAVLEEG 395 (423)
Q Consensus 383 ~~ii~vSA~~g~g 395 (423)
..+.+.++....+
T Consensus 304 ~~l~p~~~~~~~~ 316 (368)
T 3h2y_A 304 DLLSPPTPEELEN 316 (368)
T ss_dssp TTBCSSCHHHHHT
T ss_pred CccCCCchhhHhh
Confidence 3555566543333
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.6e-09 Score=109.77 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=81.5
Q ss_pred eeeeeccCCCe--EEEECCCCCcHHHHHHHHHcCCCC---CCC-cccceecceEEEEEeCC---eeEEEEcCCCCcCCcc
Q 014494 227 ELILELKSIAD--VGLVGMPSAGKSTLLGAISRAKPA---VGH-YSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAH 297 (423)
Q Consensus 227 ~l~lelk~~~~--V~LVG~~naGKSTLLn~Lsg~~~~---i~~-~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~ 297 (423)
.++|.++.+.. ++|||++|||||||||+|+|.... +.. .+..+.. ..+.+.... ..++++|++|+.....
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~ 110 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQIN 110 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccc
Confidence 45566777777 999999999999999999997432 111 1222222 334333332 3789999999865321
Q ss_pred ccc-------cchHHHHHHHh-------------cc--c-eeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCC
Q 014494 298 ENR-------GLGHAFLRHIE-------------RT--K-VLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD 354 (423)
Q Consensus 298 ~~~-------~l~~~fl~~i~-------------~a--d-~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~ 354 (423)
... .+...|...+. .+ | ++++|+|..+.. .+. + ..++..| . ..
T Consensus 111 ~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l------~~~-D-ieilk~L---~---~~ 176 (427)
T 2qag_B 111 KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL------KSL-D-LVTMKKL---D---SK 176 (427)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---------CHH-H-HHHHHHT---C---SC
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC------CHH-H-HHHHHHH---h---hC
Confidence 100 01122222211 11 2 456667765521 122 2 2222222 1 37
Q ss_pred CCeEEEEeCCCcCChHHH---HHHHHHHc--CCCcEEEEecc
Q 014494 355 RPSLVVANKIDEDGAEEV---YEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 355 ~P~IiVlNKiDl~~~~~~---~~~l~~~~--~~~~ii~vSA~ 391 (423)
.|+|+|+||+|.....+. .+.+.+.+ .+.+|+++|.-
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 177 VNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 899999999999887543 33444422 46778888853
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.93 E-value=2.4e-09 Score=99.60 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=87.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------------EEEc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------------TVAD 288 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------------~l~D 288 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+..
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 89 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEec
Confidence 568999999999999999999999999999997 345566666655221 1223
Q ss_pred CCCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 289 IPGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 289 tpG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.+.+..... ++..+...+ ....++++-++-.+++.+..+......+..+.+++ .++.++...|.++++
T Consensus 90 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-----~laral~~~p~lllL 164 (224)
T 2pcj_A 90 FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRV-----AIARALANEPILLFA 164 (224)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH-----HHHHHTTTCCSEEEE
T ss_pred CcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 333332111 111011000 00011122222223333322222233455555544 345678899999999
Q ss_pred ----eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 362 ----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+.+|......+.+.|++.. .+..++.+|+
T Consensus 165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 8888877777777776654 3566777765
No 208
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.89 E-value=3.2e-09 Score=98.15 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=88.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-------E-EEEcCCCCcCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------I-TVADIPGLIKGA 296 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-------i-~l~DtpG~i~~a 296 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+.+.|.+....
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCC
Confidence 3578999999999999999999999999999997 45666777776633 1 333444443321
Q ss_pred c--ccccchHHHHH---HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcC
Q 014494 297 H--ENRGLGHAFLR---HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDED 367 (423)
Q Consensus 297 ~--~~~~l~~~fl~---~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~ 367 (423)
. ++..+...+.. .-++++-++-.+++... +......+..+.+++ .++.++...|.++++ +.+|..
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv-----~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 94 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRV-----QLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHH-----HHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred CHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHH-----HHHHHHHhCCCEEEEECCCcCCCHH
Confidence 1 11101000000 00011111112222221 212223445555544 345677899999999 899998
Q ss_pred ChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 368 GAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 368 ~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
....+.+.|.+.. .+..++.+|+.
T Consensus 168 ~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 168 SKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 8888777776653 24567777754
No 209
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.88 E-value=3.6e-09 Score=100.84 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=85.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE---------------EEEcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------------TVADIP 290 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i---------------~l~Dtp 290 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+...+
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 568999999999999999999999999999997 445567776665322 122223
Q ss_pred CCcCCcc--ccccchH-HH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 291 GLIKGAH--ENRGLGH-AF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 291 G~i~~a~--~~~~l~~-~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
.+..... ++..++. .+ ....++++-++-.+++.+..+......+..+.+++ .++.++...|.++++
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv-----~lAraL~~~p~lllLD 184 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV-----AIARALAMEPKIMLFD 184 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH-----HHHHHHHCCCCEEEEe
Confidence 2222111 0000000 00 00001111122222332222222223455555544 345577889999999
Q ss_pred ---eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 362 ---NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+-+|......+.+.|++.. .+..++.+|+
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 217 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 8888877777777776654 3556776665
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=1.8e-09 Score=111.79 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHH------cCCCCCCCc---ccc---------ee--cceEEE----------------EE
Q 014494 235 IADVGLVGMPSAGKSTLLGAIS------RAKPAVGHY---SFT---------TL--RPNLGN----------------MN 278 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Ls------g~~~~i~~~---~ft---------Tl--~~~~g~----------------v~ 278 (423)
...|+|+|.+||||||+++.|+ |.++.+.+. ... +. -+.... +.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999998 544321110 000 00 000010 01
Q ss_pred eCCeeEEEEcCCCCcCCccccccchHHHHH--HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCC
Q 014494 279 FDDIQITVADIPGLIKGAHENRGLGHAFLR--HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRP 356 (423)
Q Consensus 279 ~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P 356 (423)
..+..++|+||||...... .+...+.. .+..+|.+++|+|+... .+.+... .. +.. ..|
T Consensus 181 ~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g------~~~~~~a----~~---~~~---~~~ 241 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIG------QACEAQA----KA---FKD---KVD 241 (504)
T ss_dssp HTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCC------TTHHHHH----HH---HHH---HHC
T ss_pred HCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEecccc------ccHHHHH----HH---HHh---hcC
Confidence 1457899999999865211 12222211 12368999999999763 1222221 11 221 146
Q ss_pred -eEEEEeCCCcCChHH-HHHHHHHHc-----------------CCCcEEEEecccCcC-HHHHHHHHHHH
Q 014494 357 -SLVVANKIDEDGAEE-VYEELERRV-----------------QGVPIYPVCAVLEEG-VPELKVGLRML 406 (423)
Q Consensus 357 -~IiVlNKiDl~~~~~-~~~~l~~~~-----------------~~~~ii~vSA~~g~g-i~eL~~~i~~~ 406 (423)
.++|+||+|...... .+. +...+ +..+++++|+..|.| +++|++++.+.
T Consensus 242 i~gvVlNK~D~~~~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 242 VASVIVTKLDGHAKGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCEEEECTTSCCCCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ceEEEEeCCccccchHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 489999999875422 222 22222 112345679999999 99999998866
No 211
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.87 E-value=6e-09 Score=103.58 Aligned_cols=150 Identities=19% Similarity=0.237 Sum_probs=92.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE----------------EEEcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------------TVADI 289 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i----------------~l~Dt 289 (423)
..++|++..+..++|+|++|||||||+++|++. +.|..|.+.+++..+ .+...
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~ 113 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQH 113 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCC
Confidence 568999999999999999999999999999997 456677777766322 12222
Q ss_pred CCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 290 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 290 pG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
+.+..... ++..++..+ ....+++.-++-.+.+.+..+......+..+.+++ .++++|...|.|+++
T Consensus 114 ~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRV-----aIArAL~~~P~lLLlD 188 (366)
T 3tui_C 114 FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV-----AIARALASNPKVLLCD 188 (366)
T ss_dssp CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHH-----HHHHHTTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEE
Confidence 33332111 111011000 00011222233333444333333344566666655 356688899999998
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+-+|......+++.|++.. .+.+++.||+.
T Consensus 189 EPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 189 QATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 8888877777777776654 36788888863
No 212
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.87 E-value=2.3e-09 Score=100.53 Aligned_cols=150 Identities=22% Similarity=0.266 Sum_probs=88.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee----------------E-EEEc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ----------------I-TVAD 288 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~----------------i-~l~D 288 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+..
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 568999999999999999999999999999997 45667777776521 2 2334
Q ss_pred CCCCcCCcc--ccccchHHH--------HHHHhccceeEEEEecCCCC-CCCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 289 IPGLIKGAH--ENRGLGHAF--------LRHIERTKVLAYVVDLASGL-DGRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 289 tpG~i~~a~--~~~~l~~~f--------l~~i~~ad~ll~VvD~s~~~-~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
.|.+..... ++..++..+ ....+++.-++-.+++.+.. +......+..+.+++ .++.++...|.
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv-----~iAral~~~p~ 165 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV-----AIARALANNPP 165 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH-----HHHHHHTTCCS
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH-----HHHHHHHcCCC
Confidence 444433211 110000000 00011111111222222211 112223455555554 34567789999
Q ss_pred EEEE----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 358 LVVA----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 358 IiVl----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
++++ +-+|......+++.+++.. .+.+++.+|+.
T Consensus 166 llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 9999 8888877777777776654 26678888764
No 213
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.86 E-value=4.6e-09 Score=99.76 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=87.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-----------E-EEEcCCCCc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-----------I-TVADIPGLI 293 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-----------i-~l~DtpG~i 293 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+...+.+.
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 100 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 100 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCC
Confidence 568899999999999999999999999999997 44566777766532 1 233444443
Q ss_pred CCcc--ccccchHHHH----H-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAH--ENRGLGHAFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~--~~~~l~~~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
.... ++..+...+. . ..++++-++-.+++.+..+......+..+.+++ .++.++...|.++++ +
T Consensus 101 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv-----~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 101 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKL-----LIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHH-----HHHHHHTTCCSEEEEESTTT
T ss_pred CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEeCCcc
Confidence 3211 1110110000 0 001112222223333222222223455555544 345577899999999 8
Q ss_pred CCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 363 KIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
.+|......+++.|.+.. .+..++.+|+
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtH 204 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSH 204 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 888877777777776654 3566777775
No 214
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.82 E-value=4.8e-09 Score=99.89 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=83.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE---------------------
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------------------- 284 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i--------------------- 284 (423)
..++|+++.+..++|+|++|||||||+++|+|. +.|..|.+.+++..+
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEccccccccccccccChhhHHHH
Confidence 568999999999999999999999999999997 445566666655322
Q ss_pred -----EEEcCCCCcCCcc--ccccchH-HH-----HHHHhccceeEEEEecCCC-CCCCCCCCcHHHHHHHHHHHHhhhc
Q 014494 285 -----TVADIPGLIKGAH--ENRGLGH-AF-----LRHIERTKVLAYVVDLASG-LDGRKGIKPWKQLRDLIIELEHHQE 350 (423)
Q Consensus 285 -----~l~DtpG~i~~a~--~~~~l~~-~f-----l~~i~~ad~ll~VvD~s~~-~~~~~~~~~~~~~~~l~~eL~~~~~ 350 (423)
.+...+.+..... ++..++. .+ ....++++-++-.+++.+. .+......+..+.+++ .++.
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv-----~lAr 166 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV-----SIAR 166 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH-----HHHH
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHH-----HHHH
Confidence 1122222222111 0000000 00 0000111111212222211 1111223445555544 3445
Q ss_pred ccCCCCeEEEE----eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 351 GLSDRPSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 351 ~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
++...|.++++ +.+|......+.+.|++.. .+.+++.+|+
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 167 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 67789999999 8888877777777776654 3567777775
No 215
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.82 E-value=3.3e-09 Score=99.74 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=87.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 293 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i 293 (423)
-..++|+++. ..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+...+.+.
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 5678999999 99999999999999999999997 456677777766332 111222222
Q ss_pred CCcc--ccccchHH---HHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCC
Q 014494 294 KGAH--ENRGLGHA---FLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKI 364 (423)
Q Consensus 294 ~~a~--~~~~l~~~---fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKi 364 (423)
.... ++..+... .....++++-++..+++.+..+......+..+.+++ .++.++...|.++++ +.+
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-----~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV-----ALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH-----HHHHHHTTCCSSBEEESTTSSC
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEeCCcccC
Confidence 1100 00000000 000011122222223333322222233455555554 345577889999999 889
Q ss_pred CcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 365 DEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 365 Dl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
|......+++.|.+.. .+..++.+|+.
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9877777777776653 25678888763
No 216
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.81 E-value=6.5e-09 Score=97.69 Aligned_cols=150 Identities=22% Similarity=0.207 Sum_probs=84.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-------------E-EEEcCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------I-TVADIPG 291 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-------------i-~l~DtpG 291 (423)
..++|++..+..++|+|++|||||||++.|+|. +.|..|.+.+++.. + .+...+.
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 91 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc
Confidence 568999999999999999999999999999997 44556666665521 1 1222233
Q ss_pred CcCCcc--ccccchHH----HHHHHhccceeEEEEe-cCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE---
Q 014494 292 LIKGAH--ENRGLGHA----FLRHIERTKVLAYVVD-LASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA--- 361 (423)
Q Consensus 292 ~i~~a~--~~~~l~~~----fl~~i~~ad~ll~VvD-~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl--- 361 (423)
+..... ++..+... .....+.++.++..++ +.+..+......+..+.+++ .++.++...|.++++
T Consensus 92 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv-----~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 92 IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQML-----AIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHH-----HHHHHHTTCCSEEEEECT
T ss_pred cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEcCC
Confidence 222111 00000000 0000001111111111 22212222223455555544 344577899999999
Q ss_pred -eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 362 -NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 362 -NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+.+|......+++.|++.. .+..++.+|+.
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 8888877777777776654 46678888763
No 217
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.81 E-value=8.3e-09 Score=102.45 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=89.3
Q ss_pred eecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHH
Q 014494 269 TLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIEL 345 (423)
Q Consensus 269 Tl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL 345 (423)
|+......+.+++..+.+|||+|+.+ +...|..+++.++++|+|+|+++... .......+.....++.++
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~-------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i 252 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRS-------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI 252 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGG-------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchh-------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence 34444556777789999999999865 34445567889999999999997310 000013455555555555
Q ss_pred HhhhcccCCCCeEEEEeCCCcCC--------------------hHHHHHHHHHHc---------CCCcEEEEecccCcCH
Q 014494 346 EHHQEGLSDRPSLVVANKIDEDG--------------------AEEVYEELERRV---------QGVPIYPVCAVLEEGV 396 (423)
Q Consensus 346 ~~~~~~l~~~P~IiVlNKiDl~~--------------------~~~~~~~l~~~~---------~~~~ii~vSA~~g~gi 396 (423)
... +.+.+.|+|||+||+|+.. .++..+.+...+ ....++++||+++.||
T Consensus 253 ~~~-~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV 331 (353)
T 1cip_A 253 CNN-KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV 331 (353)
T ss_dssp HTC-GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred HcC-ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhH
Confidence 432 2345789999999999842 223333343221 2456789999999999
Q ss_pred HHHHHHHHHHhcc
Q 014494 397 PELKVGLRMLVNG 409 (423)
Q Consensus 397 ~eL~~~i~~~l~~ 409 (423)
+++++++.+.+..
T Consensus 332 ~~vF~~v~~~i~~ 344 (353)
T 1cip_A 332 QFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 218
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.79 E-value=7.3e-09 Score=99.35 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=86.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE---------------EEEcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI---------------TVADI 289 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i---------------~l~Dt 289 (423)
-..++|+++.+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+...
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQD 92 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEEcC
Confidence 4678999999999999999999999999999997 456677777766433 11122
Q ss_pred CC-CcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 290 PG-LIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 290 pG-~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
|. ...... ++..++... ....++++-++-.+++....+......+..+.+++ .++.++...|.++++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv-----~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 93 PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV-----AIAGVLVMEPKVLIL 167 (275)
T ss_dssp GGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH-----HHHHHHTTCCSEEEE
T ss_pred cccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 21 000000 000000000 00011122222222333222222223455555544 345677899999999
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+-+|......+++.|++.. .+.+++.+|+.
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 8888877777776666543 25677877764
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.78 E-value=2.5e-08 Score=95.38 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=67.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcCCCC-CC-------CcccceecceEEEEEeCC---eeEEEEcCCCCcCCcccccc---c
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAKPA-VG-------HYSFTTLRPNLGNMNFDD---IQITVADIPGLIKGAHENRG---L 302 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~~~-i~-------~~~ftTl~~~~g~v~~~~---~~i~l~DtpG~i~~a~~~~~---l 302 (423)
.++|||++|||||||+|+|+|.... .+ +.+.++.....+.+.... ..++++|++|+......... +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 6899999999999999999986322 22 112222222333332222 36899999998653321110 1
Q ss_pred ----hHHHHHH--------------HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCC
Q 014494 303 ----GHAFLRH--------------IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKI 364 (423)
Q Consensus 303 ----~~~fl~~--------------i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKi 364 (423)
...+... +.++++.++++|.... +.++.+ ..++..|.. ..++|+|+||+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-----gL~~lD--~~~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-----SLRPLD--LEFMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-----SCCHHH--HHHHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-----cCCHHH--HHHHHHHHh------cCcEEEEEecc
Confidence 1112221 1235778888886531 123332 333444432 37999999999
Q ss_pred CcCChHH
Q 014494 365 DEDGAEE 371 (423)
Q Consensus 365 Dl~~~~~ 371 (423)
|.....+
T Consensus 151 D~lt~~e 157 (270)
T 3sop_A 151 DTMTLEE 157 (270)
T ss_dssp GGSCHHH
T ss_pred ccCCHHH
Confidence 9998754
No 220
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.78 E-value=1.1e-08 Score=101.26 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=92.3
Q ss_pred ceeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCC
Q 014494 224 SESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGL 292 (423)
Q Consensus 224 ~~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~ 292 (423)
--..++|+++.+..++|+|++||||||||++|+|. ..|..|.+.+++..+ .+...+.+
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 45679999999999999999999999999999997 456678887776332 22222333
Q ss_pred cCCcc--ccccchHHHH---HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 293 IKGAH--ENRGLGHAFL---RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 293 i~~a~--~~~~l~~~fl---~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
..... ++..++.... .. ++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++ +.
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRv-----alAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRV-----ALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHH-----HHHHHTTSCCSEEEEESSSTT
T ss_pred CCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECcccc
Confidence 22111 1111110000 00 1222233333444433333334555665554 456688899999999 88
Q ss_pred CCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 364 IDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
+|......+.+.|++.. .+.+++.+|+
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 88877777777776654 2567888876
No 221
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.78 E-value=7.8e-09 Score=102.57 Aligned_cols=150 Identities=20% Similarity=0.191 Sum_probs=88.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLI 293 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i 293 (423)
-..++|++..+..++|+|++||||||||++|+|. +.|..|.+.+++..+ .+..-+.+.
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 99 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALF 99 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCcccC
Confidence 3578999999999999999999999999999997 456667777766322 111222222
Q ss_pred CCcc--ccccchHHHH----H-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 294 KGAH--ENRGLGHAFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 294 ~~a~--~~~~l~~~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
.... ++..++.... . ..++++-++-.+++.+..+......+..+.+++ .++++|...|.++++ +
T Consensus 100 ~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 100 QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRV-----ALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHH-----HHHHHHHcCCCEEEEeCCcc
Confidence 2111 1111110000 0 011222223333333322333333455665554 345678899999999 8
Q ss_pred CCCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 363 KIDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
.+|......+.+.|++.. .+.+++.+|+
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 204 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 889877777776666554 2567777775
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.78 E-value=8.4e-09 Score=102.41 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEE---------------EEcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT---------------VADIP 290 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~---------------l~Dtp 290 (423)
..++|++..+..++|+|++||||||||++|+|. +.|..|.+.+++..+. +...+
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~ 89 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG 89 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence 578999999999999999999999999999997 4566677777664431 11111
Q ss_pred CCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE--
Q 014494 291 GLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA-- 361 (423)
Q Consensus 291 G~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl-- 361 (423)
.+..... ++..++... ....++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 90 ~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRV-----alArAL~~~P~lLLLDE 164 (359)
T 3fvq_A 90 VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRA-----ALARALAPDPELILLDE 164 (359)
T ss_dssp CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEES
T ss_pred cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEeC
Confidence 2211100 000000000 00001111222222333322222333455555554 355678899999998
Q ss_pred --eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 --NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 --NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+-+|.....++.+.+.+.. .+.++++||+.
T Consensus 165 Pts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 165 PFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 8888776666666555543 36778888863
No 223
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.77 E-value=1.4e-08 Score=101.11 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=90.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++..+..++|+|++||||||||++|+|. +.|..|.+.+++..+ .+...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYP 88 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccCC
Confidence 678999999999999999999999999999997 446667777765322 1222233322
Q ss_pred Ccc--ccccchHHHH----H-HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAFL----R-HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~fl----~-~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++..+. . ..++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++ +.
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRV-----AIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESGGGG
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECcccc
Confidence 111 1111110000 0 011222233333444433333334556665554 355678899999999 88
Q ss_pred CCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+|......+.+.|++... +.+++.+|+.
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 164 LDALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 888777777776666532 5678888763
No 224
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.77 E-value=7.8e-09 Score=97.97 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=82.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc--ccccc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGL 302 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~--~~~~l 302 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+...--.+...|.+..... ++..+
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~ 89 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLM 89 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHG
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHH
Confidence 3568999999999999999999999999999997 3344455443221112223333321110 00000
Q ss_pred h-----------HHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcC
Q 014494 303 G-----------HAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDED 367 (423)
Q Consensus 303 ~-----------~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~ 367 (423)
+ ... ..++++-++..+++.+..+......+..+.+++ .++.++...|.++++ +.+|..
T Consensus 90 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv-----~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 90 GRSTHINTFAKPKSH--DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLI-----LIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp GGGGGSCTTCCCCHH--HHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH-----HHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred hhhhhcccccCCCHH--HHHHHHHHHHHcCChHHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEeCCcccCCHH
Confidence 0 000 001111111122222222222223455555554 344567789999999 888887
Q ss_pred ChHHHHHHHHHHc-C-CCcEEEEec
Q 014494 368 GAEEVYEELERRV-Q-GVPIYPVCA 390 (423)
Q Consensus 368 ~~~~~~~~l~~~~-~-~~~ii~vSA 390 (423)
....+.+.|.+.. . +..++.+|+
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7777777777654 2 566777775
No 225
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.72 E-value=1.6e-08 Score=100.28 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=88.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEE----------------EEcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQIT----------------VADI 289 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~----------------l~Dt 289 (423)
..++|+++.+..++|+|++||||||||++|+|. +.|..|.+.+++..+. +...
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETT
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEeCC
Confidence 478999999999999999999999999999997 3455666666553332 1111
Q ss_pred CCCcCCcc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE-
Q 014494 290 PGLIKGAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA- 361 (423)
Q Consensus 290 pG~i~~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl- 361 (423)
+.+..... ++..++..+ ....++++-++-.+++.+..+......+..+.+++ .++++|...|.++++
T Consensus 91 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv-----alAraL~~~P~lLLLD 165 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV-----ALARALVKDPSLLLLD 165 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEE
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHhCCCEEEEE
Confidence 22221110 110000000 00011122222223333322222333455555554 345678899999999
Q ss_pred ---eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 ---NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+.+|......+.+.|++.. .+.+++.+|+.
T Consensus 166 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8999888887777776654 25678888863
No 226
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.72 E-value=5.4e-09 Score=99.26 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=38.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~ 281 (423)
..++|+++.+..++|+|++|||||||+++|+|. +.|..|.+.+++
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g 68 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFEN 68 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETT
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECC
Confidence 568899999999999999999999999999997 445567666665
No 227
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.72 E-value=1.3e-08 Score=101.67 Aligned_cols=150 Identities=22% Similarity=0.194 Sum_probs=90.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|+++.+..++|+|++||||||||++|+|. +.|..|.+.+++..+ .+...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p 88 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYP 88 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCC
Confidence 578999999999999999999999999999997 456677777766321 2223333333
Q ss_pred Ccc--ccccchHHH-----HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF-----LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f-----l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++..+ ....++++-++-.+.+....+......+..+.+++ .++++|...|.++++ +-
T Consensus 89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRV-----aiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV-----AIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHH-----HHHHHHHHCCSEEEEESTTTT
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHH-----HHHHHHHcCCCEEEEECCCcC
Confidence 211 111111110 00011222223333333333333333455665554 345567789999998 78
Q ss_pred CCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 364 IDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+|.....++.+.|++.. .+.++++||+.
T Consensus 164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 88776666666666553 26788888863
No 228
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.72 E-value=1.6e-08 Score=100.43 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=86.9
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|+++.+..++|+|++||||||||++|+|. +.|..|.+.+++..+ .+...+.+..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 88 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCT
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 578999999999999999999999999999997 445667776665321 1122222222
Q ss_pred Ccc--ccccchHHH----HHH-HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eC
Q 014494 295 GAH--ENRGLGHAF----LRH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NK 363 (423)
Q Consensus 295 ~a~--~~~~l~~~f----l~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NK 363 (423)
... ++..++..+ ... .++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++ +.
T Consensus 89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRv-----alArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 89 HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV-----ALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH-----HHHHHHTTCCSEEEEESTTTT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH-----HHHHHHHcCCCEEEEECCccc
Confidence 111 111010000 000 01112222223333322222333455555554 345678899999999 88
Q ss_pred CCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 364 IDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 364 iDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
+|......+.+.|++.. .+.+++.+|+
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 192 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTH 192 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88777777776666553 2567888876
No 229
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.70 E-value=2.6e-08 Score=99.24 Aligned_cols=132 Identities=8% Similarity=0.056 Sum_probs=82.9
Q ss_pred ecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHHH
Q 014494 270 LRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELE 346 (423)
Q Consensus 270 l~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~ 346 (423)
.......+.+++..+.+|||+|+.+ +...+..+++.++++|+|+|+++... .......+.....++.++.
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~-------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRS-------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred cceEEEEeeeCCeEEEEEeccchhh-------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 3334455677789999999999865 33344556788999999999997310 0000134555555555554
Q ss_pred hhhcccCCCCeEEEEeCCCcCC---------------------hHHHHHHHHHHc---------CCCcEEEEecccCcCH
Q 014494 347 HHQEGLSDRPSLVVANKIDEDG---------------------AEEVYEELERRV---------QGVPIYPVCAVLEEGV 396 (423)
Q Consensus 347 ~~~~~l~~~P~IiVlNKiDl~~---------------------~~~~~~~l~~~~---------~~~~ii~vSA~~g~gi 396 (423)
.. +.+.+.|+|+|+||+|+.. .++..+.+...+ ....++++||++++||
T Consensus 262 ~~-~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV 340 (362)
T 1zcb_A 262 NN-RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI 340 (362)
T ss_dssp TC-GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred cc-hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence 32 2345789999999999852 122233332211 1356789999999999
Q ss_pred HHHHHHHHHHhcc
Q 014494 397 PELKVGLRMLVNG 409 (423)
Q Consensus 397 ~eL~~~i~~~l~~ 409 (423)
+++++++.+.+..
T Consensus 341 ~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 341 RLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 230
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.69 E-value=2.3e-08 Score=99.86 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=88.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEE-----------------Ec
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITV-----------------AD 288 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l-----------------~D 288 (423)
..++|++..+..++|+|++||||||||++|+|. +.|..|.+.+++..+.- ..
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q 88 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCEEEEeC
Confidence 578999999999999999999999999999997 44666777776644321 11
Q ss_pred CCCCcCCcc--ccccchHHHH----HH-HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 289 IPGLIKGAH--ENRGLGHAFL----RH-IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 289 tpG~i~~a~--~~~~l~~~fl----~~-i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
.+.+..... ++..++.... .. -++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 89 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLL 163 (372)
T 1g29_1 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV-----ALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHH-----HHHHHHHTCCSEEEE
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHH-----HHHHHHhcCCCEEEE
Confidence 111211111 1111110000 00 01222223333343322323333455665554 345677789999999
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA~ 391 (423)
+.+|......+.+.|++.. .+.+++.+|+.
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 8888877777666666553 25678888763
No 231
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.68 E-value=1.1e-08 Score=97.76 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=81.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-------------EEEEcCCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------ITVADIPGL 292 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-------------i~l~DtpG~ 292 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. -.+...+.+
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~ 96 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSEL 96 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCC
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCcc
Confidence 568999999999999999999999999999997 33445555555421 112222222
Q ss_pred cCCcc--ccccchHHH---HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCC------CCeEEEE
Q 014494 293 IKGAH--ENRGLGHAF---LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSD------RPSLVVA 361 (423)
Q Consensus 293 i~~a~--~~~~l~~~f---l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~------~P~IiVl 361 (423)
..... ++..++... ....++++-++-.+++.+..+......+..+.+++. ++.++.. .|.++++
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~-----iAraL~~~~~~~~~p~lLll 171 (266)
T 4g1u_C 97 AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQ-----LARVLAQLWQPQPTPRWLFL 171 (266)
T ss_dssp CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHH-----HHHHHHHTCCSSCCCEEEEE
T ss_pred CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHH-----HHHHHhcccccCCCCCEEEE
Confidence 11100 000000000 000011111111222222222222234556655543 3445556 8999998
Q ss_pred ----eCCCcCChHHHHHHHHHHc--CCCcEEEEec
Q 014494 362 ----NKIDEDGAEEVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~--~~~~ii~vSA 390 (423)
+-+|......+++.|++.. .+..++.+|+
T Consensus 172 DEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH 206 (266)
T 4g1u_C 172 DEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH 206 (266)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS
T ss_pred eCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 8888777777777776654 2346777775
No 232
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.68 E-value=1e-08 Score=97.89 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE----------EEEcCC-CCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI----------TVADIP-GLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i----------~l~Dtp-G~i~ 294 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++..+ .+...| .+..
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~ 92 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF 92 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCC
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhcC
Confidence 568999999999999999999999999999997 445667777765321 111221 1111
Q ss_pred CccccccchHHHHHHH-----------hccceeEEEEecC--CCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 295 GAHENRGLGHAFLRHI-----------ERTKVLAYVVDLA--SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 295 ~a~~~~~l~~~fl~~i-----------~~ad~ll~VvD~s--~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
... .... +... ++++-++..+.+. +..+......+..+.+++ .++.++...|.|+++
T Consensus 93 ~~t----v~en-l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv-----~lAraL~~~p~lllL 162 (266)
T 2yz2_A 93 AER----VFDE-VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV-----AIASVIVHEPDILIL 162 (266)
T ss_dssp CSS----HHHH-HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH-----HHHHHHTTCCSEEEE
T ss_pred CCc----HHHH-HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH-----HHHHHHHcCCCEEEE
Confidence 000 0000 0000 0011111111222 111111222444554444 345677899999999
Q ss_pred ----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+.+|......+++.|++.. .+..++.+|+.
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 163 DEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 8888877777777777654 35567777654
No 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.68 E-value=5.6e-09 Score=98.72 Aligned_cols=149 Identities=17% Similarity=0.097 Sum_probs=82.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|. |.+.+++.. + .+...+.
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 83 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQT 83 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCC
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCCCc
Confidence 3578999999999999999999999999999997 4566 777776532 1 2223333
Q ss_pred CcCCcc--ccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe-------EEEE-
Q 014494 292 LIKGAH--ENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS-------LVVA- 361 (423)
Q Consensus 292 ~i~~a~--~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~-------IiVl- 361 (423)
+..... ++..+........++++.++..+++.+..+......+..+.+++. ++.++...|. ++++
T Consensus 84 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~-----lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 84 PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR-----LAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHH-----HHHHHHHHCTTTCTTCCEEEES
T ss_pred cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH-----HHHHHHcCCCcCCCCCeEEEEE
Confidence 322111 000000000000000111111122222122222234555555543 3344556677 9998
Q ss_pred ---eCCCcCChHHHHHHHHHHc-CCCcEEEEec
Q 014494 362 ---NKIDEDGAEEVYEELERRV-QGVPIYPVCA 390 (423)
Q Consensus 362 ---NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA 390 (423)
+.+|......+.+.|++.. .+..++.+|+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 191 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 8888877777777777654 3556666665
No 234
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.65 E-value=1.9e-08 Score=100.37 Aligned_cols=148 Identities=18% Similarity=0.169 Sum_probs=81.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|+++.+..++|+|++||||||||++|+|. +.|..|.+.+++..+ .+...+.+..
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 578999999999999999999999999999997 445566666655321 1111111111
Q ss_pred Ccc--ccc-------cchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----
Q 014494 295 GAH--ENR-------GLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA---- 361 (423)
Q Consensus 295 ~a~--~~~-------~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl---- 361 (423)
... ++. ++... ...++++-++-.+.+.+..+......+..+.+++ .++++|...|.++++
T Consensus 97 ~ltv~eni~~~~~~~~~~~~--~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-----alArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 97 HMTVYENIAFPLKIKKFPKD--EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV-----AVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp CCCHHHHHHTTCC--CCCHH--HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH-----HHHHHHTTCCSEEEEESTT
T ss_pred CCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-----HHHHHHhcCCCEEEEcCCC
Confidence 100 000 00000 0001111112222222222222222333444433 344677899999999
Q ss_pred eCCCcCChHHHHHHHHHHcC--CCcEEEEecc
Q 014494 362 NKIDEDGAEEVYEELERRVQ--GVPIYPVCAV 391 (423)
Q Consensus 362 NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA~ 391 (423)
+.+|......+.+.|++... +.+++.+|+.
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 88887777777766665531 5678888763
No 235
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.64 E-value=6.2e-08 Score=92.65 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=84.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+...|.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL 103 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc
Confidence 3568999999999999999999999999999997 44556666665521 1 2223333
Q ss_pred CcCC-ccccccc-----h--HHHHHHHhc--cceeEEEE--ecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 292 LIKG-AHENRGL-----G--HAFLRHIER--TKVLAYVV--DLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 292 ~i~~-a~~~~~l-----~--~~fl~~i~~--ad~ll~Vv--D~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+... ..++..+ . ......... ++-++.-+ .+....+......+..+.+++ .++.+|...|.|+
T Consensus 104 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv-----~lAraL~~~p~ll 178 (271)
T 2ixe_A 104 LFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAV-----ALARALIRKPRLL 178 (271)
T ss_dssp CCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHH-----HHHHHHTTCCSEE
T ss_pred cccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHH-----HHHHHHhcCCCEE
Confidence 3221 0000000 0 001011111 11011000 111111111223455665554 3456778999999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcC--CCcEEEEec
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQ--GVPIYPVCA 390 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~--~~~ii~vSA 390 (423)
++ +-+|......+++.|.+... +..++.+|+
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 99 88888777777777777643 556777765
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.63 E-value=3.5e-08 Score=93.20 Aligned_cols=152 Identities=16% Similarity=0.070 Sum_probs=83.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE--------------EEEcCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI--------------TVADIPG 291 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i--------------~l~DtpG 291 (423)
..++|++..+..++|+|++|||||||++.|+|.. .+.|..|.+.+++..+ .+...|.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---------~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 90 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP---------EYTVERGEILLDGENILELSPDERARKGLFLAFQYPV 90 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT---------TCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---------CCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc
Confidence 5689999999999999999999999999999951 0246678887776332 1112222
Q ss_pred CcCCcc--ccccchHHHH--------HHHhccceeEEEEecC-CCCCCCCCC-CcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 292 LIKGAH--ENRGLGHAFL--------RHIERTKVLAYVVDLA-SGLDGRKGI-KPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 292 ~i~~a~--~~~~l~~~fl--------~~i~~ad~ll~VvD~s-~~~~~~~~~-~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+..... ++..+..... ...+++.-++-.+.+. +..+..... .+..+.+++ .++.++...|.++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv-----~iAraL~~~p~ll 165 (250)
T 2d2e_A 91 EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN-----EILQLLVLEPTYA 165 (250)
T ss_dssp -CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH-----HHHHHHHHCCSEE
T ss_pred cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH-----HHHHHHHcCCCEE
Confidence 221111 0000000000 0001111122222221 111222222 444555444 3445667889999
Q ss_pred EE----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 360 VA----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
++ +-+|......+++.|++.. .+..++.+|+.
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 98 8888887777788887764 35567777753
No 237
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.62 E-value=2.7e-08 Score=94.82 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=82.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-----------EEEcCCCCcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-----------TVADIPGLIK 294 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-----------~l~DtpG~i~ 294 (423)
..++|++. +..++|+|++|||||||+++|+|. + |..|.+.+++..+ .+...|.+ .
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~ 87 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI-G 87 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-T
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-C
Confidence 56889999 999999999999999999999997 5 6778888776322 11122222 1
Q ss_pred CccccccchHH--HHHHH-----hccceeEEEEecC-CCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----e
Q 014494 295 GAHENRGLGHA--FLRHI-----ERTKVLAYVVDLA-SGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----N 362 (423)
Q Consensus 295 ~a~~~~~l~~~--fl~~i-----~~ad~ll~VvD~s-~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----N 362 (423)
.. .... +...+ ++++-++-.+++. +..+......+..+.+++ .++.++...|.++++ +
T Consensus 88 -~t----v~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv-----~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 88 -VT----VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV-----RTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp -SB----HHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH-----HHHHHHHTCCSEEEEECTTT
T ss_pred -Cc----HHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH-----HHHHHHHhCCCEEEEECCcc
Confidence 00 1111 00000 0111111122222 212222223455555554 344566789999999 8
Q ss_pred CCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 363 KIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 363 KiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
.+|......+.+.|++.. . +++.+|+.
T Consensus 158 ~LD~~~~~~l~~~L~~~~-~-tviivtHd 184 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYG-K-EGILVTHE 184 (263)
T ss_dssp TCCHHHHHHHHHHHHHSC-S-EEEEEESC
T ss_pred ccCHHHHHHHHHHHHHhc-C-cEEEEEcC
Confidence 888877777777777654 3 66666653
No 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.62 E-value=1.3e-07 Score=89.25 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=84.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|+++.+..++|+|++|||||||+++|+|. +.|..|.+.+++.. + .+...|.
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~ 93 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV 93 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc
Confidence 3578999999999999999999999999999997 44556666665521 1 2223333
Q ss_pred CcCC-ccccccc-----h-HHHHHHHhccceeEEEEec-----CCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 292 LIKG-AHENRGL-----G-HAFLRHIERTKVLAYVVDL-----ASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 292 ~i~~-a~~~~~l-----~-~~fl~~i~~ad~ll~VvD~-----s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+... ..++..+ . ......++...+- .+++. ...........+..+.+++ .++.++...|.++
T Consensus 94 l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv-----~iAraL~~~p~ll 167 (247)
T 2ff7_A 94 LLNRSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRI-----AIARALVNNPKIL 167 (247)
T ss_dssp CTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHH-----HHHHHHTTCCSEE
T ss_pred cccccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHH-----HHHHHHhcCCCEE
Confidence 3221 0000000 0 0111111111100 00000 0000111123455555554 3456778999999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++ +-+|......+++.|++...+..++.+|+.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~ 203 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 98 888887777777777766455667777754
No 239
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.61 E-value=6.5e-08 Score=95.33 Aligned_cols=133 Identities=13% Similarity=0.050 Sum_probs=91.0
Q ss_pred eecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHH
Q 014494 269 TLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIEL 345 (423)
Q Consensus 269 Tl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL 345 (423)
|.......+.+.+..+.+|||+|+.+ +...|..+++.++++|+|+|+++... .......+.....++.++
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 44445556677789999999999865 55667778899999999999984210 000124455555555555
Q ss_pred HhhhcccCCCCeEEEEeCCCcCCh--------------------HHHHHHHHHHc-------------------------
Q 014494 346 EHHQEGLSDRPSLVVANKIDEDGA--------------------EEVYEELERRV------------------------- 380 (423)
Q Consensus 346 ~~~~~~l~~~P~IiVlNKiDl~~~--------------------~~~~~~l~~~~------------------------- 380 (423)
.. .+.+.+.|+|+|+||+|+... ++..+.+.+.+
T Consensus 221 ~~-~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (340)
T 4fid_A 221 MT-NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVN 299 (340)
T ss_dssp HH-CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------
T ss_pred hh-hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccC
Confidence 33 234567899999999998642 23334454444
Q ss_pred CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 381 QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 381 ~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
....++++||++..||+.++..+.+.+-+
T Consensus 300 ~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 300 EKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 12456899999999999999988877643
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=1.5e-07 Score=91.23 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=73.3
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+.+||| +.+.... . ..++..+|++++|+|++++ ..+...+..|+.++.. .+.|.|+|+
T Consensus 63 ~~~~iwD~--qer~~~l----~---~~~~~~ad~vilV~D~~~~------~~s~~~l~~~l~~~~~-----~~~piilv~ 122 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLL----T---KPHVANVDQVILVVTVKMP------ETSTYIIDKFLVLAEK-----NELETVMVI 122 (301)
T ss_dssp SSEEEEEE--CCCSCEE----T---TTTEESCCEEEEEECSSTT------CCCHHHHHHHHHHHHH-----TTCEEEEEE
T ss_pred CeEEEEEE--cccccee----e---ccccccCCEEEEEEeCCCC------CCCHHHHHHHHHHHHH-----CCCCEEEEE
Confidence 37899999 4432222 2 1467889999999999873 1245666777766543 378999999
Q ss_pred eCCCcCChHHH--HHHHHHHcCC-CcEEEEecccCcCHHHHHHHHH
Q 014494 362 NKIDEDGAEEV--YEELERRVQG-VPIYPVCAVLEEGVPELKVGLR 404 (423)
Q Consensus 362 NKiDl~~~~~~--~~~l~~~~~~-~~ii~vSA~~g~gi~eL~~~i~ 404 (423)
||+|+...... .+.+.+.+.. .+++++||+++.|+++++..+.
T Consensus 123 NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 123 NKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred eHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99999875432 2333344422 6899999999999999998765
No 241
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.60 E-value=8.6e-08 Score=91.45 Aligned_cols=152 Identities=14% Similarity=0.074 Sum_probs=86.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee-------------E-EEEcCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ-------------I-TVADIPG 291 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~-------------i-~l~DtpG 291 (423)
..++|++..+..++|+|++|||||||+++|+|... ..|..|.+.+++.. + .+...|.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~ 107 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCC
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcc
Confidence 56899999999999999999999999999999510 13566777776532 2 2333344
Q ss_pred CcCCccc--cccchH-HHH-----------HHHhccceeEEEEecCC-CCCCCCC-CCcHHHHHHHHHHHHhhhcccCCC
Q 014494 292 LIKGAHE--NRGLGH-AFL-----------RHIERTKVLAYVVDLAS-GLDGRKG-IKPWKQLRDLIIELEHHQEGLSDR 355 (423)
Q Consensus 292 ~i~~a~~--~~~l~~-~fl-----------~~i~~ad~ll~VvD~s~-~~~~~~~-~~~~~~~~~l~~eL~~~~~~l~~~ 355 (423)
+...... +..+.. ... ...++++-++-.+++.. ..+.... ..+..+.+++. ++.++...
T Consensus 108 l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~-----iAraL~~~ 182 (267)
T 2zu0_C 108 EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND-----ILQMAVLE 182 (267)
T ss_dssp CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH-----HHHHHHHC
T ss_pred ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH-----HHHHHHhC
Confidence 3322110 000000 000 00011111222223321 1122222 25566655553 34566789
Q ss_pred CeEEEE----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 356 PSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 356 P~IiVl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
|.|+++ +.+|......+++.|++.. .+..++.+|+.
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 999998 8888877777777777654 34566666653
No 242
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.57 E-value=3.3e-08 Score=94.95 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=39.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCe
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDI 282 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~ 282 (423)
..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGK 83 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTB
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCE
Confidence 568999999999999999999999999999997 4455677666653
No 243
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.56 E-value=9.5e-08 Score=96.22 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=85.3
Q ss_pred EEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHHHhhhc
Q 014494 274 LGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQE 350 (423)
Q Consensus 274 ~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~~ 350 (423)
...+.+++..+.+|||+|+.+ +...+..+++.++++|+|+|+++... .......+.....++.++... +
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~-------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~-~ 280 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRD-------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-R 280 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGG-------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-T
T ss_pred EEEeecCCccceecccchhhh-------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc-c
Confidence 345667788999999999966 33345567789999999999997210 111134566666676666432 2
Q ss_pred ccCCCCeEEEEeCCCcCChHH-----------------------------------HHHHH----HHHc-------CCCc
Q 014494 351 GLSDRPSLVVANKIDEDGAEE-----------------------------------VYEEL----ERRV-------QGVP 384 (423)
Q Consensus 351 ~l~~~P~IiVlNKiDl~~~~~-----------------------------------~~~~l----~~~~-------~~~~ 384 (423)
.+.+.|+|||+||+|+..... ....+ .+.. ....
T Consensus 281 ~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~ 360 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360 (402)
T ss_dssp TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence 345789999999999843211 11111 1111 1234
Q ss_pred EEEEecccCcCHHHHHHHHHHHhcc
Q 014494 385 IYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
++++||+++.||++++..+.+.+..
T Consensus 361 ~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 361 PHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCcCHHHHHHHHHHHHHH
Confidence 5689999999999999998877643
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.55 E-value=8.7e-08 Score=89.80 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=84.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcc--ccccc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAH--ENRGL 302 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~--~~~~l 302 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.--.+...|-+.. .. ++..+
T Consensus 21 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~i~~v~Q~~~~~~-~tv~enl~~ 88 (237)
T 2cbz_A 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGSVAYVPQQAWIQN-DSLRENILF 88 (237)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSCEEEECSSCCCCS-EEHHHHHHT
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEEEEcCCCcCCC-cCHHHHhhC
Confidence 4678999999999999999999999999999997 5677888888773223333343221 11 00000
Q ss_pred -----hHHHHHHHhccceeEEEEecCC-----CCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCC
Q 014494 303 -----GHAFLRHIERTKVLAYVVDLAS-----GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDG 368 (423)
Q Consensus 303 -----~~~fl~~i~~ad~ll~VvD~s~-----~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~ 368 (423)
........+.+.+ ...++... ..+......+..+.+++. ++.++...|.|+++ +-+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~-----lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 89 GCQLEEPYYRSVIQACAL-LPDLEILPSGDRTEIGEKGVNLSGGQKQRVS-----LARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp TSCCCTTHHHHHHHHTTC-HHHHTTSTTGGGSEESTTSBCCCHHHHHHHH-----HHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred ccccCHHHHHHHHHHHhh-HHHHHhccccccccccCCCCCCCHHHHHHHH-----HHHHHhcCCCEEEEeCcccccCHHH
Confidence 0011111111111 00011100 001111235566666553 34566688999998 7788766
Q ss_pred hHHHHHHHH---HHcCCCcEEEEecc
Q 014494 369 AEEVYEELE---RRVQGVPIYPVCAV 391 (423)
Q Consensus 369 ~~~~~~~l~---~~~~~~~ii~vSA~ 391 (423)
...+++.+. +...+.+++.+|+.
T Consensus 163 ~~~i~~~l~~~~~~~~~~tviivtH~ 188 (237)
T 2cbz_A 163 GKHIFENVIGPKGMLKNKTRILVTHS 188 (237)
T ss_dssp HHHHHHHTTSTTSTTTTSEEEEECSC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEecC
Confidence 666666663 22235567777654
No 245
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.55 E-value=1.1e-07 Score=89.36 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=31.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-..++|++..+..++|+|++|||||||+++|+|.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999999999999997
No 246
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.54 E-value=6.8e-08 Score=93.95 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=86.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|+++.+..|+|||++|||||||++.|++. +.|..|.+.+++.. + .+...|-
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~ 138 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCC
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCc
Confidence 3678999999999999999999999999999997 55667777776531 1 1222233
Q ss_pred CcCCc-cccccc------hHHHHHHHhccceeEEEEecCCC----CCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGA-HENRGL------GHAFLRHIERTKVLAYVVDLASG----LDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a-~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~----~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+.... .++..+ .......++.+.+.-++-..... ........+..+.+++ .+++++...|.|++
T Consensus 139 lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv-----aiARAL~~~p~iLl 213 (306)
T 3nh6_A 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV-----AIARTILKAPGIIL 213 (306)
T ss_dssp CCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH-----HHHHHHHHCCSEEE
T ss_pred cCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH-----HHHHHHHhCCCEEE
Confidence 32210 001000 01111222222111000000000 0000112455665554 34556678899999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.|.+...+.++|.||+.
T Consensus 214 LDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 214 LDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 8 788877777777778776666677777763
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.54 E-value=5.9e-08 Score=93.34 Aligned_cols=58 Identities=21% Similarity=0.408 Sum_probs=37.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
.+|+++|.||+|||||+|+|++.. ..+++.|++|.+... +.+ +..+.++||||+....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPK 179 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCC
Confidence 479999999999999999999986 568889999987753 333 4579999999998643
No 248
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.52 E-value=4.6e-08 Score=91.16 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=83.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCC-ccccccch
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKG-AHENRGLG 303 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~-a~~~~~l~ 303 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.--.+...|.+... ..++..++
T Consensus 24 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~ 92 (229)
T 2pze_A 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFG 92 (229)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTT
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCEEEEEecCCcccCCCHHHHhhcc
Confidence 3678999999999999999999999999999997 55677888887643344444544331 00111010
Q ss_pred -----HHHHHHHhccceeEEEEecCC-----CCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCCh
Q 014494 304 -----HAFLRHIERTKVLAYVVDLAS-----GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGA 369 (423)
Q Consensus 304 -----~~fl~~i~~ad~ll~VvD~s~-----~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~ 369 (423)
..+...++.+.+ ...++... .........+..+.+++ .++.++...|.++++ +.+|....
T Consensus 93 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv-----~lAral~~~p~lllLDEPts~LD~~~~ 166 (229)
T 2pze_A 93 VSYDEYRYRSVIKACQL-EEDISKFAEKDNIVLGEGGITLSGGQRARI-----SLARAVYKDADLYLLDSPFGYLDVLTE 166 (229)
T ss_dssp SCCCHHHHHHHHHHTTC-HHHHTTSTTGGGSCBCTTCTTSCHHHHHHH-----HHHHHHHSCCSEEEEESTTTTSCHHHH
T ss_pred CCcChHHHHHHHHHhCc-HHHHHhCcccccccccCCCCcCCHHHHHHH-----HHHHHHhcCCCEEEEECcccCCCHHHH
Confidence 011111111111 00111000 00001123455665554 344566789999998 77886665
Q ss_pred HHHHHHH-HHHcCCCcEEEEec
Q 014494 370 EEVYEEL-ERRVQGVPIYPVCA 390 (423)
Q Consensus 370 ~~~~~~l-~~~~~~~~ii~vSA 390 (423)
..+.+.+ .+...+..++.+|+
T Consensus 167 ~~i~~~l~~~~~~~~tvi~vtH 188 (229)
T 2pze_A 167 KEIFESCVCKLMANKTRILVTS 188 (229)
T ss_dssp HHHHHHCCCCCTTTSEEEEECC
T ss_pred HHHHHHHHHHhhCCCEEEEEcC
Confidence 5555442 22223456666665
No 249
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.52 E-value=9.6e-08 Score=94.78 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=78.3
Q ss_pred CeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 281 DIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 281 ~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
...+.+|||+|+.+ +...+..+++.++++++|+|+++... .......+.....++.++... +.+.+.|+
T Consensus 182 ~v~l~iwDtaGQe~-------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~pi 253 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSF 253 (354)
T ss_dssp --EEEEEEECCSTT-------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEE
T ss_pred ceeeEEEECCCchh-------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeE
Confidence 36799999999976 33344566789999999999983110 001134566666666665432 23457899
Q ss_pred EEEEeCCCcCCh--------------------------HHHHHHHHHHc--------------CCCcEEEEecccCcCHH
Q 014494 358 LVVANKIDEDGA--------------------------EEVYEELERRV--------------QGVPIYPVCAVLEEGVP 397 (423)
Q Consensus 358 IiVlNKiDl~~~--------------------------~~~~~~l~~~~--------------~~~~ii~vSA~~g~gi~ 397 (423)
|+|+||+|+... ++..+.+++.+ ....++++||++++||+
T Consensus 254 iLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~ 333 (354)
T 2xtz_A 254 MLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333 (354)
T ss_dssp EEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHH
T ss_pred EEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHH
Confidence 999999998421 11222223221 12235899999999999
Q ss_pred HHHHHHHHHhcc
Q 014494 398 ELKVGLRMLVNG 409 (423)
Q Consensus 398 eL~~~i~~~l~~ 409 (423)
++++.+.+.+.+
T Consensus 334 ~vF~~v~~~I~~ 345 (354)
T 2xtz_A 334 KTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877643
No 250
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.51 E-value=2e-07 Score=91.45 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=88.0
Q ss_pred ecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCC---CCCCCCcHHHHHHHHHHHH
Q 014494 270 LRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLD---GRKGIKPWKQLRDLIIELE 346 (423)
Q Consensus 270 l~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~---~~~~~~~~~~~~~l~~eL~ 346 (423)
.......+.+.+..+.+|||.|+.+ ....|..+++.++++++|+|+++... .......+.....++.++.
T Consensus 155 iGi~~~~~~~~~v~l~iwDtgGQe~-------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 155 TGIIEYPFDLQSVIFRMVDVGGQRS-------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred eeEEEEEEEeeceeeEEEEcCCchh-------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 3344455667789999999999865 33345567889999999999873211 0011244555555555553
Q ss_pred hhhcccCCCCeEEEEeCCCcCCh---------------------HHHHHHHHHHc--------CCCcEEEEecccCcCHH
Q 014494 347 HHQEGLSDRPSLVVANKIDEDGA---------------------EEVYEELERRV--------QGVPIYPVCAVLEEGVP 397 (423)
Q Consensus 347 ~~~~~l~~~P~IiVlNKiDl~~~---------------------~~~~~~l~~~~--------~~~~ii~vSA~~g~gi~ 397 (423)
. .+.+.+.|+|+++||+|+... ++..+.+...+ ....++++||+++.||+
T Consensus 228 ~-~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 228 T-YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp T-SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred h-hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 2 234568999999999998532 23333343332 12356789999999999
Q ss_pred HHHHHHHHHhccc
Q 014494 398 ELKVGLRMLVNGE 410 (423)
Q Consensus 398 eL~~~i~~~l~~~ 410 (423)
.++..+.+.+-+.
T Consensus 307 ~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 307 FVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 251
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.48 E-value=2.3e-07 Score=97.74 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=48.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEe-------CCeeEEEEcCCCCcCCc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNF-------DDIQITVADIPGLIKGA 296 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~-------~~~~i~l~DtpG~i~~a 296 (423)
..|+|+|.||+|||||+|+|+|....+ +++++|.+.+.+...+ .+..+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 479999999999999999999986544 6777777777776654 35789999999998643
No 252
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.46 E-value=3e-07 Score=87.29 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=81.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|++..+..++|+|++|||||||+++|+|.. .+ .|.+.+++.. + .+...|.
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-----------DA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI 103 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-----------CC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-----------CC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc
Confidence 35688999999999999999999999999999962 22 3555555421 1 2223333
Q ss_pred CcCC-ccccccc------hHHHHHHHhccceeEEEEe-cCCC----CCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 292 LIKG-AHENRGL------GHAFLRHIERTKVLAYVVD-LASG----LDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 292 ~i~~-a~~~~~l------~~~fl~~i~~ad~ll~VvD-~s~~----~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+... ..++..+ .......++.+.+. ..++ .... ........+..+.+++. ++.++...|.|+
T Consensus 104 l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~-----lAraL~~~p~ll 177 (260)
T 2ghi_A 104 LFNETIKYNILYGKLDATDEEVIKATKSAQLY-DFIEALPKKWDTIVGNKGMKLSGGERQRIA-----IARCLLKDPKIV 177 (260)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH-HHHHTSTTGGGCEESSSSBCCCHHHHHHHH-----HHHHHHHCCSEE
T ss_pred ccccCHHHHHhccCCCCCHHHHHHHHHHhCCH-HHHHhccccccccccCCcCcCCHHHHHHHH-----HHHHHHcCCCEE
Confidence 3211 0000000 01111111111110 0000 0000 00011134556665553 344666889999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++ +-+|......+.+.|.+...+..++.+|+.
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~ 213 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 98 888887777777777776555667777654
No 253
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.44 E-value=6.1e-07 Score=86.22 Aligned_cols=102 Identities=15% Similarity=0.281 Sum_probs=69.5
Q ss_pred EEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCC
Q 014494 286 VADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKID 365 (423)
Q Consensus 286 l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiD 365 (423)
+-..||+.. ....+++++++++|++++|+|+..+... .. ..+.. + +.++|.++|+||+|
T Consensus 3 i~w~PGhm~------ka~~~~~~~l~~aDvVl~VvDAr~p~~~---~~--~~l~~-------~---l~~kp~ilVlNK~D 61 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTEKLKLIDIVYELVDARIPMSS---RN--PMIED-------I---LKNKPRIMLLNKAD 61 (282)
T ss_dssp ------CTT------HHHHHHHHHGGGCSEEEEEEETTSTTTT---SC--HHHHH-------H---CSSSCEEEEEECGG
T ss_pred CcCCchHHH------HHHHHHHHHHhhCCEEEEEEeCCCCCcc---CC--HHHHH-------H---HCCCCEEEEEECcc
Confidence 445788765 3456788999999999999999875321 01 12222 1 14799999999999
Q ss_pred cCChHHHHHHHHHHc--CCCcEEEEecccCcCHHHHHHHHHHHhcc
Q 014494 366 EDGAEEVYEELERRV--QGVPIYPVCAVLEEGVPELKVGLRMLVNG 409 (423)
Q Consensus 366 l~~~~~~~~~l~~~~--~~~~ii~vSA~~g~gi~eL~~~i~~~l~~ 409 (423)
+..... .+.+.+.+ .+.+++++||+++.|+++|++.+.+.+..
T Consensus 62 L~~~~~-~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 62 KADAAV-TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp GSCHHH-HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 987543 33333333 25689999999999999999998887753
No 254
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.43 E-value=3.1e-07 Score=93.48 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=81.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC------CCCC-C-C------------------cc---c--ceecce-E---EEEEeC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA------KPAV-G-H------------------YS---F--TTLRPN-L---GNMNFD 280 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~------~~~i-~-~------------------~~---f--tTl~~~-~---g~v~~~ 280 (423)
..|+++|.+|+||||+++.|+.. ++.. . + .+ . +|.+|. . +.-.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 48999999999999999999763 1110 0 0 00 0 222221 0 000124
Q ss_pred CeeEEEEcCCCCcCCccccccchHHHH--HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCC-C-
Q 014494 281 DIQITVADIPGLIKGAHENRGLGHAFL--RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR-P- 356 (423)
Q Consensus 281 ~~~i~l~DtpG~i~~a~~~~~l~~~fl--~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~-P- 356 (423)
+..++|+||||..... ..+..... ..+..+|.+++|+|+... .+ .. ..+..+.. .. |
T Consensus 180 ~~D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g------~~---~~----~~~~~~~~---~~~~i 240 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIG------QQ---AG----IQAKAFKE---AVGEI 240 (432)
T ss_dssp SCSEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGG------GG---HH----HHHHHHHT---TSCSC
T ss_pred CCCEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeecccc------HH---HH----HHHHHHhh---cccCC
Confidence 5789999999986521 11111111 112257899999998752 11 11 12223332 23 5
Q ss_pred eEEEEeCCCcCChH-HHHHHHHHHcCCCcEEE------------------EecccCcC-HHHHHHHHHHHhc
Q 014494 357 SLVVANKIDEDGAE-EVYEELERRVQGVPIYP------------------VCAVLEEG-VPELKVGLRMLVN 408 (423)
Q Consensus 357 ~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~------------------vSA~~g~g-i~eL~~~i~~~l~ 408 (423)
..+|+||+|..... ..+. +...+ +.++.+ +|+..|.| +..|++.+.+.+.
T Consensus 241 ~gvVlnK~D~~~~~g~~l~-~~~~~-~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 241 GSIIVTKLDGSAKGGGALS-AVAET-KAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp EEEEEECSSSCSTTHHHHH-HHHHS-SCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred eEEEEeCCCCccchHHHHH-HHHHH-CCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 88999999986543 2333 34333 334444 46666666 6655555544443
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.41 E-value=3.5e-07 Score=93.03 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=79.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHc------CCCCC--CC-cccc------eec--ceEEEEE-------------------e
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR------AKPAV--GH-YSFT------TLR--PNLGNMN-------------------F 279 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg------~~~~i--~~-~~ft------Tl~--~~~g~v~-------------------~ 279 (423)
..|+++|++||||||++..|+. .++.+ .+ +... +.. .....+. .
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999973 22211 01 0000 000 0000110 1
Q ss_pred CCeeEEEEcCCCCcCCccccccchHHH--HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 280 DDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 280 ~~~~i~l~DtpG~i~~a~~~~~l~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
.+..++|+||||...... .+.... +..+..+|.+++|+|+... .+.... ...|.+. -.+.
T Consensus 181 ~~~DvVIIDTaGrl~~d~---~lm~el~~i~~~~~pd~vlLVvDA~~g------q~a~~~-------a~~f~~~--~~i~ 242 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDK---ALIEEMKQISNVIHPHEVILVIDGTIG------QQAYNQ-------ALAFKEA--TPIG 242 (443)
T ss_dssp TTCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGG------GGHHHH-------HHHHHHS--CTTE
T ss_pred CCCCEEEEECCCcccchH---HHHHHHHHHHHhhcCceEEEEEeCCCc------hhHHHH-------HHHHHhh--CCCe
Confidence 236799999999754211 122221 1234457899999998752 122221 1233322 3567
Q ss_pred EEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHH
Q 014494 358 LVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPE 398 (423)
Q Consensus 358 IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~e 398 (423)
.+|+||+|.....-..-.+... .+.|+.++++ |+++++
T Consensus 243 gVIlTKlD~~~~gG~~ls~~~~-~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 243 SIIVTKLDGSAKGGGALSAVAA-TGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp EEEEECCSSCSSHHHHHHHHHT-TCCCEEEEEC--SSSTTC
T ss_pred EEEEECCCCcccccHHHHHHHH-HCCCEEEEEc--CCChHH
Confidence 7999999998665433333333 3678988885 665553
No 256
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.40 E-value=7.5e-07 Score=94.57 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.+.|+|||++||||||||++|+|..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 3469999999999999999999974
No 257
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.38 E-value=5.1e-08 Score=94.18 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=81.6
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCc-cccc-cc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA-HENR-GL 302 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a-~~~~-~l 302 (423)
-..++|++..+..++|+|++|||||||+++|+|. +.|..|.+.+++.--.+...|.+.... .++. ++
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~ 122 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGV 122 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTT
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCc
Confidence 4678999999999999999999999999999997 557778888776323333444443210 0000 00
Q ss_pred --hH-HHHHHHhccceeEEEEecCC-----CCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChH
Q 014494 303 --GH-AFLRHIERTKVLAYVVDLAS-----GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAE 370 (423)
Q Consensus 303 --~~-~fl~~i~~ad~ll~VvD~s~-----~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~ 370 (423)
.. .+...++...+ ...++... .........+..+.+++. ++.++...|.++++ +.+|.....
T Consensus 123 ~~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~-----lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 123 SYDEYRYRSVIKACQL-EEDISKFAEKDNIVLGEGGITLSGGQRARIS-----LARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp CCCHHHHHHHHHHTTC-HHHHHTSTTGGGCBC----CCCCHHHHHHHH-----HHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred ccchHHHHHHHHHhCh-HHHHHhccccccchhcCccCcCCHHHHHHHH-----HHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 00 01111111110 00000000 000001134556655543 44566789999998 778876655
Q ss_pred HHHHHH-HHHcCCCcEEEEecc
Q 014494 371 EVYEEL-ERRVQGVPIYPVCAV 391 (423)
Q Consensus 371 ~~~~~l-~~~~~~~~ii~vSA~ 391 (423)
.+++.+ .+...+..++.+|+.
T Consensus 197 ~i~~~ll~~~~~~~tviivtHd 218 (290)
T 2bbs_A 197 EIFESCVCKLMANKTRILVTSK 218 (290)
T ss_dssp HHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHHHHHhhCCCEEEEEecC
Confidence 555532 222234566766653
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.37 E-value=4.2e-07 Score=93.45 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=83.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC------CCCC-Ccccc--------e--ecceEEEEEe---------
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK------PAVG-HYSFT--------T--LRPNLGNMNF--------- 279 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~------~~i~-~~~ft--------T--l~~~~g~v~~--------- 279 (423)
..++|.+..+..|+|||++|||||||++.|++.- +.+. .-.+. . .....+.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 4577778888899999999999999999998641 1111 10110 0 0111223221
Q ss_pred ----------CCeeEEEEcCCCCcCCccccccchHH---HHHHHh-----ccceeEEEEecCCCCCCCCCCCcHHHHHHH
Q 014494 280 ----------DDIQITVADIPGLIKGAHENRGLGHA---FLRHIE-----RTKVLAYVVDLASGLDGRKGIKPWKQLRDL 341 (423)
Q Consensus 280 ----------~~~~i~l~DtpG~i~~a~~~~~l~~~---fl~~i~-----~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l 341 (423)
.+..++++||+|...... .+... +...++ ..+-+++|+|.... .+...
T Consensus 364 V~e~l~~a~~~~~DvVLIDTaGrl~~~~---~lm~EL~kiv~iar~l~~~~P~evLLvLDattG------q~al~----- 429 (503)
T 2yhs_A 364 IFDAIQAAKARNIDVLIADTAGRLQNKS---HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG------QNAVS----- 429 (503)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCSCCCHH---HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT------HHHHH-----
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccchhh---hHHHHHHHHHHHHHHhccCCCCeeEEEecCccc------HHHHH-----
Confidence 125688999999854221 12111 222222 13467888997652 11222
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 342 IIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 342 ~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
.+..+... -....+|+||+|-...- ..+..+... +.+|.+++ +|+++++|
T Consensus 430 --~ak~f~~~--~~itgvIlTKLD~takgG~~lsi~~~~--~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 430 --QAKLFHEA--VGLTGITLTKLDGTAKGGVIFSVADQF--GIPIRYIG--VGERIEDL 480 (503)
T ss_dssp --HHHHHHHH--TCCSEEEEECGGGCSCCTHHHHHHHHH--CCCEEEEE--CSSSGGGE
T ss_pred --HHHHHHhh--cCCCEEEEEcCCCcccccHHHHHHHHH--CCCEEEEe--cCCChhhc
Confidence 22222221 13456889999974332 333333333 56888877 67777654
No 259
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.34 E-value=8.8e-08 Score=96.19 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=81.3
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-..++|+++.+..++|+|++||||||||++|+|.. . ..|.+.+++.. + .+...+.
T Consensus 37 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-----------~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~ 104 (390)
T 3gd7_A 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-----------N-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVF 104 (390)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-----------E-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCC
T ss_pred eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-----------C-CCeEEEECCEECCcCChHHHhCCEEEEcCCcc
Confidence 36789999999999999999999999999999962 2 34666665421 1 1122222
Q ss_pred CcCC-cccccc-----chHHHHHHHhccceeEEEEecCCC-C----CCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKG-AHENRG-----LGHAFLRHIERTKVLAYVVDLASG-L----DGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~-a~~~~~-----l~~~fl~~i~~ad~ll~VvD~s~~-~----~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+... ..++.. ........++...+- .+.+-... . .......+..+.+++ .++++|...|.|++
T Consensus 105 lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRv-----alARAL~~~P~lLL 178 (390)
T 3gd7_A 105 IFSGTFRKNLDPNAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLM-----CLARSVLSKAKILL 178 (390)
T ss_dssp CCSEEHHHHHCTTCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHH-----HHHHHHHTTCCEEE
T ss_pred cCccCHHHHhhhccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHH-----HHHHHHhcCCCEEE
Confidence 2210 000000 001111111111110 00000000 0 000001355555554 34567778999999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.|++...+..++.+++.
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd 213 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSS
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 8 778877666777777765556677877764
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.32 E-value=1.2e-06 Score=85.06 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=62.1
Q ss_pred HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH--HHHHHHHHc--CCCc
Q 014494 309 HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRV--QGVP 384 (423)
Q Consensus 309 ~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~--~~~~l~~~~--~~~~ 384 (423)
++..+|.+++|+|++++ ..+...+..++..+.. .+.|.|+|+||+|+.+..+ ..+.+.+.+ .+.+
T Consensus 76 ~~~naD~vliV~d~~~p------~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~ 144 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMP------EFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD 144 (302)
T ss_dssp EEESCCEEEEEECSTTT------TCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHhcCEEEEEEECCCC------CCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe
Confidence 57889999999999873 1245566666665543 3789999999999987542 123333322 2568
Q ss_pred EEEEecccCcCHHHHHHHHH
Q 014494 385 IYPVCAVLEEGVPELKVGLR 404 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~i~ 404 (423)
++++||+++.|+++|++.+.
T Consensus 145 ~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 145 VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEECCTTTCTTHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHhhcc
Confidence 99999999999999988764
No 261
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.28 E-value=1.1e-06 Score=93.04 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=86.9
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-.+++|+++.+..++|+|++|||||||++.|+|. .+|..|.+.+++.. + .+...|.
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~ 428 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 428 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCC
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCc
Confidence 3679999999999999999999999999999997 45666777766521 1 2222333
Q ss_pred CcCCc-ccccc--------c-hHHHHHHHhccceeEEEEecCCCCC----CCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 292 LIKGA-HENRG--------L-GHAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 292 ~i~~a-~~~~~--------l-~~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
+.... .++.. . .....+.++.+.+-=++-...+..+ ......+..+.+++ .+++++...|.
T Consensus 429 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv-----~iAral~~~p~ 503 (595)
T 2yl4_A 429 LFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI-----AIARALLKNPK 503 (595)
T ss_dssp CCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH-----HHHHHHHHCCS
T ss_pred ccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH-----HHHHHHHcCCC
Confidence 32210 00000 0 1112222222211000000000000 01123556666655 34456678899
Q ss_pred EEEE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 358 LVVA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 358 IiVl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
|+++ +-+|......+.+.+.+...+.+++.+|+.
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 541 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHR 541 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9998 788877777777777776656677777763
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.28 E-value=1.1e-06 Score=86.29 Aligned_cols=144 Identities=15% Similarity=0.215 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCcccceecc--------------eEE--EEEe-----------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSFTTLRP--------------NLG--NMNF----------------- 279 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~ftTl~~--------------~~g--~v~~----------------- 279 (423)
.+..|+|+|++|||||||++.|++.- +......+...+. ..+ .+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 45589999999999999999998741 1111111111110 011 1110
Q ss_pred --CCeeEEEEcCCCCcCCccccccchHHHH--HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCC
Q 014494 280 --DDIQITVADIPGLIKGAHENRGLGHAFL--RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 355 (423)
Q Consensus 280 --~~~~i~l~DtpG~i~~a~~~~~l~~~fl--~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 355 (423)
.+..+.++||+|...... .+...+. ...-..|..++++|.... . .+...+..+... ..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral~~de~llvLDa~t~------~-------~~~~~~~~~~~~--~~ 269 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNR---NLMDEMKKIARVTKPNLVIFVGDALAG------N-------AIVEQARQFNEA--VK 269 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHHCCSEEEEEEEGGGT------T-------HHHHHHHHHHHH--SC
T ss_pred HhccchhhHHhhccchhHHH---HHHHHHHHHHHHhcCCCCEEEEecHHH------H-------HHHHHHHHHHHh--cC
Confidence 124577899999754222 2222221 122235788899997652 1 122222223221 24
Q ss_pred CeEEEEeCCCcCCh-HHHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 356 PSLVVANKIDEDGA-EEVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 356 P~IiVlNKiDl~~~-~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
..++++||+|.... -..+..+... +.|+.+++ +|+++++|
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~--~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVI--DAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHH--TCCEEEEE--CSSSTTCE
T ss_pred CCEEEEeCcCCccchhHHHHHHHHH--CCCEEEEe--CCCCcccc
Confidence 66889999997543 2334433333 67899998 78877654
No 263
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.26 E-value=4.8e-07 Score=86.02 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=39.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGA 296 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a 296 (423)
.+|+++|.||+|||||+|+|++... .+++.+++|.... .+.+ +..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccCc
Confidence 4899999999999999999998764 5678888887654 2333 3578999999998643
No 264
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.24 E-value=1.2e-06 Score=92.60 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=81.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeE-------------EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQI-------------TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i-------------~l~DtpG 291 (423)
-.+++|+++.+..++|+|++|||||||++.|+|. .+|..|.+.+++..+ .+...|-
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCc
Confidence 3578999999999999999999999999999997 233344444433211 1111111
Q ss_pred CcCC-ccccc------cc-hHHHHHHHhccceeEEEEecCCCC----CCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 292 LIKG-AHENR------GL-GHAFLRHIERTKVLAYVVDLASGL----DGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 292 ~i~~-a~~~~------~l-~~~fl~~i~~ad~ll~VvD~s~~~----~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
+..+ ..++. .. .....+.++.+.+-=++-...+.. .......+..+.+++ .+++++...|.|+
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~-----~iAral~~~p~il 502 (582)
T 3b5x_A 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV-----AIARALLRDAPVL 502 (582)
T ss_pred cccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH-----HHHHHHHcCCCEE
Confidence 1110 00000 00 111122222221100000000000 001112445555544 3456777899999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
++ +-+|......+.+.+.+...+.+++.+|+.
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 538 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 98 788887777777778776556677777764
No 265
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=3.1e-06 Score=85.94 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=77.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc------CCCCC-C-------------------Cccccee----cce------EEEEEe
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR------AKPAV-G-------------------HYSFTTL----RPN------LGNMNF 279 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg------~~~~i-~-------------------~~~ftTl----~~~------~g~v~~ 279 (423)
..|+++|++||||||++..|+. .++.. + ..++.+. +|. ......
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~ 177 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVK 177 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHh
Confidence 4789999999999999999973 22211 0 0111000 000 000001
Q ss_pred CCeeEEEEcCCCCcCCccccccchHHHHH--HHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCe
Q 014494 280 DDIQITVADIPGLIKGAHENRGLGHAFLR--HIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPS 357 (423)
Q Consensus 280 ~~~~i~l~DtpG~i~~a~~~~~l~~~fl~--~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~ 357 (423)
.+..++++||||..... ....+...+.. ..-..+.+++|+|+... .+...... .|... -.+.
T Consensus 178 ~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~g------q~a~~~a~-------~f~~~--~~~~ 241 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASIG------QKAYDLAS-------RFHQA--SPIG 241 (433)
T ss_dssp TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGGG------GGGHHHHH-------HHHHH--CSSE
T ss_pred cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCccc------hHHHHHHH-------HHhcc--cCCc
Confidence 24678999999964310 11122222221 12245889999998752 12222222 22221 2578
Q ss_pred EEEEeCCCcCChHH-HHHHHHHHcCCCcEEEEecccCcCHH
Q 014494 358 LVVANKIDEDGAEE-VYEELERRVQGVPIYPVCAVLEEGVP 397 (423)
Q Consensus 358 IiVlNKiDl~~~~~-~~~~l~~~~~~~~ii~vSA~~g~gi~ 397 (423)
.+|+||+|.....- .+..... . +.|+.++++ |++++
T Consensus 242 gVIlTKlD~~a~~G~als~~~~-~-g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 242 SVIITKMDGTAKGGGALSAVVA-T-GATIKFIGT--GEKID 278 (433)
T ss_dssp EEEEECGGGCSCHHHHHHHHHH-H-TCEEEEEEC--CSSSS
T ss_pred EEEEecccccccchHHHHHHHH-H-CCCEEEEEC--CCChH
Confidence 89999999876543 2333333 2 678888885 66653
No 266
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.23 E-value=1.6e-06 Score=91.62 Aligned_cols=151 Identities=20% Similarity=0.346 Sum_probs=88.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-.+++|+++.+..++|+|++|||||||++.|++. ++|..|.+.+++.. + .+...|-
T Consensus 359 l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 427 (587)
T 3qf4_A 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427 (587)
T ss_dssp EEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCC
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCCc
Confidence 4689999999999999999999999999999997 45666777766521 1 1222233
Q ss_pred CcCCc-cccccc------hHHHHHHHhccceeEEEEecCCCC----CCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGA-HENRGL------GHAFLRHIERTKVLAYVVDLASGL----DGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a-~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~----~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..+. .++..+ .....+..+.+.+.-++-...+.. .......+..+.+++ .+++++...|.|++
T Consensus 428 lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv-----~lARal~~~p~ill 502 (587)
T 3qf4_A 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL-----SIARALVKKPKVLI 502 (587)
T ss_dssp CCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH-----HHHHHHHTCCSEEE
T ss_pred CcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH-----HHHHHHHcCCCEEE
Confidence 22210 011100 111222222222111110000000 011123456666555 34567778999999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.+++...+.+++.||+.
T Consensus 503 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 537 (587)
T 3qf4_A 503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537 (587)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 8 778877777777888777667778888764
No 267
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.22 E-value=3e-07 Score=105.77 Aligned_cols=152 Identities=19% Similarity=0.276 Sum_probs=91.8
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEE-EcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITV-ADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l-~DtpG 291 (423)
=+.++|+++.+.+|||||++|||||||++.|.+. .+|..|.+.+++.. +.+ .--|-
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~ 1163 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE
Confidence 3789999999999999999999999999999986 44555666665521 111 11111
Q ss_pred CcCCc-cccc-------c-chHHHHHHHhccceeEEEEecCCCCCCCC----CCCcHHHHHHHHHHHHhhhcccCCCCeE
Q 014494 292 LIKGA-HENR-------G-LGHAFLRHIERTKVLAYVVDLASGLDGRK----GIKPWKQLRDLIIELEHHQEGLSDRPSL 358 (423)
Q Consensus 292 ~i~~a-~~~~-------~-l~~~fl~~i~~ad~ll~VvD~s~~~~~~~----~~~~~~~~~~l~~eL~~~~~~l~~~P~I 358 (423)
+..+. .+|. . -..+..+.++.|.+-=++-...+..+... ..-+..+.+.+ ++++++..+|.|
T Consensus 1164 LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri-----aiARAllr~~~I 1238 (1321)
T 4f4c_A 1164 LFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI-----AIARALVRNPKI 1238 (1321)
T ss_dssp CCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH-----HHHHHHHSCCSE
T ss_pred eeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH-----HHHHHHHhCCCE
Confidence 11110 0110 0 11233444444433222222222222111 12355555543 566788899999
Q ss_pred EEE----eCCCcCChHHHHHHHHHHcCCCcEEEEeccc
Q 014494 359 VVA----NKIDEDGAEEVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 359 iVl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
+++ .-+|..++..+.+.|.+.+.+.+++.|+++-
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 998 7788777777778888877788899898763
No 268
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.21 E-value=1.3e-06 Score=92.25 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=88.0
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-.+++|+++.+..++|+|++|||||||++.|+|. .+|..|.+.+++.. + .+...|-
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 425 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCC
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCc
Confidence 4679999999999999999999999999999997 56677888777632 2 2223343
Q ss_pred CcCCc-cccccc------hHHHHHHHhccceeEEEEecCCCCC----CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGA-HENRGL------GHAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a-~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..+. .++..+ .....+.++.+.+.-++-......+ ......+..+.+++ .+++++...|.|++
T Consensus 426 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv-----~lAral~~~p~ill 500 (578)
T 4a82_A 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL-----SIARIFLNNPPILI 500 (578)
T ss_dssp CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH-----HHHHHHHHCCSEEE
T ss_pred cCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH-----HHHHHHHcCCCEEE
Confidence 33220 011111 1112222222221101111111000 00112455665554 34556678899999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.+.+...+.+++.+|+.
T Consensus 501 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 535 (578)
T 4a82_A 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535 (578)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred EECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 8 778877666677777766666677777764
No 269
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.20 E-value=9e-07 Score=93.84 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=77.6
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcCCC-CCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH-H
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRAKP-AVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF-L 307 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f-l 307 (423)
|++..+..++|+|++|||||||+++|+|... ..+...+ ....+.+..+ +......... .....+ .
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~---~~~i~~v~Q~---------~~~~~~~tv~-e~~~~~~~ 443 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVAYKPQY---------IKAEYEGTVY-ELLSKIDS 443 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---CCCEEEECSS---------CCCCCSSBHH-HHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---eeEEEEEecC---------ccCCCCCcHH-HHHHhhhc
Confidence 4467899999999999999999999999743 2232221 1122322211 1110000000 000000 0
Q ss_pred HH---HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc
Q 014494 308 RH---IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 308 ~~---i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~ 380 (423)
.. -+.++-++-.+++.+..+......+..+.+++. ++.+|...|.++++ |.+|......+++.|++..
T Consensus 444 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~-----iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 444 SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA-----IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp HHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHH-----HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH-----HHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 00 011222222333333223333345566666553 44567789999999 8899887777777777653
Q ss_pred --CCCcEEEEec
Q 014494 381 --QGVPIYPVCA 390 (423)
Q Consensus 381 --~~~~ii~vSA 390 (423)
.+..++.+|+
T Consensus 519 ~~~g~tvi~vsH 530 (607)
T 3bk7_A 519 EKNEKTALVVEH 530 (607)
T ss_dssp HHTTCEEEEECS
T ss_pred HhCCCEEEEEeC
Confidence 3567777775
No 270
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.19 E-value=2.3e-06 Score=78.30 Aligned_cols=101 Identities=13% Similarity=-0.032 Sum_probs=65.6
Q ss_pred chHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhh-hcc--cCCCCeEEEEeCC-CcCCh---HHHHH
Q 014494 302 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHH-QEG--LSDRPSLVVANKI-DEDGA---EEVYE 374 (423)
Q Consensus 302 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~-~~~--l~~~P~IiVlNKi-Dl~~~---~~~~~ 374 (423)
+...|..|++.+|.||||||.++..- .....++ .+|..+ ... +.+.|.+|++||. |++.+ .++.+
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R----~eak~EL----~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e 186 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKR----HEWQDEF----SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAH 186 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCC----CCHHHHH----HHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhH----HHHHHHH----HHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHH
Confidence 45557788999999999999987311 1222222 222222 222 4678999999995 67643 34333
Q ss_pred HHH--HHcCCCcEEEEecccCcCHHHHHHHHHHHhccc
Q 014494 375 ELE--RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGE 410 (423)
Q Consensus 375 ~l~--~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~ 410 (423)
.|. ..-..+.|..|||.+|+||.+-++||.+.+...
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 322 111457799999999999999999998877544
No 271
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.18 E-value=9.3e-07 Score=93.39 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=86.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
-.+++|+++.+..++|+|++|||||||++.|+|. .+|..|.+.+++.. + .+...|.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 427 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCC
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCCc
Confidence 4679999999999999999999999999999997 45566777666521 1 1222233
Q ss_pred CcCCc-ccccc------c-hHHHHHHHhccceeEEEEe-cCC----CCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeE
Q 014494 292 LIKGA-HENRG------L-GHAFLRHIERTKVLAYVVD-LAS----GLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL 358 (423)
Q Consensus 292 ~i~~a-~~~~~------l-~~~fl~~i~~ad~ll~VvD-~s~----~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I 358 (423)
+..+. .++.. . .....+.++.+.+- ..++ ..+ .........+..+.+++ .+++++...|.|
T Consensus 428 l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl-----~iAral~~~p~i 501 (582)
T 3b60_A 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRI-----AIARALLRDSPI 501 (582)
T ss_dssp CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHH-----HHHHHHHHCCSE
T ss_pred CCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHH-----HHHHHHHhCCCE
Confidence 22210 00100 0 11122222222110 0000 000 00011123456666655 344566788999
Q ss_pred EEE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 359 VVA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 359 iVl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+++ +-+|......+.+.+.+...+.+++.+|+.
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 538 (582)
T 3b60_A 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 998 888877777777777776566677777764
No 272
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.17 E-value=7.5e-07 Score=93.21 Aligned_cols=143 Identities=12% Similarity=0.047 Sum_probs=76.1
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcCCCC-CCCcccceecceEEEEEeCCeeEEEEcCCCCcCCccccccchHHH-H
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRAKPA-VGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRGLGHAF-L 307 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~-i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f-l 307 (423)
|++..+..++|+|++|||||||+++|+|..+. .+...+ ....+.+..+ +.......... ....+ .
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~---------~~~~~~~tv~~-~~~~~~~ 373 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQY---------IKADYEGTVYE-LLSKIDA 373 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSS---------CCCCCSSBHHH-HHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecC---------CcCCCCCcHHH-HHHhhhc
Confidence 34578999999999999999999999997432 232221 1122322211 11100000000 00000 0
Q ss_pred HHH---hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc
Q 014494 308 RHI---ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV 380 (423)
Q Consensus 308 ~~i---~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~ 380 (423)
... +.++-++-.+++.+..+......+..+.+++. ++.++...|.++++ |.+|......+++.|++..
T Consensus 374 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~-----lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 374 SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVA-----IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp HHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHH-----HHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-----HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 000 11111222222222222222335566666553 34566789999999 8999888777777776653
Q ss_pred --CCCcEEEEec
Q 014494 381 --QGVPIYPVCA 390 (423)
Q Consensus 381 --~~~~ii~vSA 390 (423)
.+..++.||+
T Consensus 449 ~~~g~tvi~vsH 460 (538)
T 1yqt_A 449 EKNEKTALVVEH 460 (538)
T ss_dssp HHHTCEEEEECS
T ss_pred HhCCCEEEEEeC
Confidence 2567777775
No 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.17 E-value=1.7e-06 Score=90.41 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=76.6
Q ss_pred eeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcC-CCCcCCccccccchHHHH
Q 014494 229 ILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADI-PGLIKGAHENRGLGHAFL 307 (423)
Q Consensus 229 ~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~Dt-pG~i~~a~~~~~l~~~fl 307 (423)
+++++.+..++|+|++|||||||+++|+|.. .|..|.+.+.+..+....- +.... . ....+.+
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~i~~~~q~~~~~~----~-~tv~~~l 351 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEI-----------TADEGSVTPEKQILSYKPQRIFPNY----D-GTVQQYL 351 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSS-----------CCSBCCEESSCCCEEEECSSCCCCC----S-SBHHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcEEEECCeeeEeechhccccc----C-CCHHHHH
Confidence 3457889999999999999999999999973 3333444433322222110 00000 0 0011111
Q ss_pred HHHh---------ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHH
Q 014494 308 RHIE---------RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYE 374 (423)
Q Consensus 308 ~~i~---------~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~ 374 (423)
.... .++-++-.+.+.+..+......+..+.+++. ++.+|...|.|+++ +.+|.....++++
T Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~-----iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLY-----IAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp HHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHH-----HHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH-----HHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1100 0000111112222222222334566666553 44566789999999 8899887777777
Q ss_pred HHHHHc--CCCcEEEEec
Q 014494 375 ELERRV--QGVPIYPVCA 390 (423)
Q Consensus 375 ~l~~~~--~~~~ii~vSA 390 (423)
.|++.. .+..++.||+
T Consensus 427 ~l~~l~~~~g~tvi~vsH 444 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDH 444 (538)
T ss_dssp HHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHhCCCEEEEEeC
Confidence 776654 3567777775
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.16 E-value=5e-06 Score=80.68 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..|+|+|++|||||||++.|++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999864
No 275
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=6e-07 Score=95.15 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=85.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 292 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG~ 292 (423)
.+++|+++.+..++|+|++|||||||++.|+|. .+|..|.+.+++.. + .+...|-+
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc
Confidence 568999999999999999999999999999997 56677888777632 1 12222333
Q ss_pred cCCc-cccccc------hHHHHHHHhccceeEEEEecCCCCCC----CCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 293 IKGA-HENRGL------GHAFLRHIERTKVLAYVVDLASGLDG----RKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 293 i~~a-~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~~~----~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..+. .++..+ .....+.++.+.+--++-......+. .....+..+.+++ .+++++...|.|+++
T Consensus 441 f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv-----~iAral~~~p~illl 515 (598)
T 3qf4_B 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL-----AITRAFLANPKILIL 515 (598)
T ss_dssp CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH-----HHHHHHHTCCSEEEE
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH-----HHHHHHhcCCCEEEE
Confidence 2210 000000 00111122221110000000000000 0012344554444 355677789999998
Q ss_pred ----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 362 ----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 362 ----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+-+|......+.+.+.+...+.+++.||+.
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 549 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHR 549 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCC
T ss_pred ECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 777776667777777776667777777764
No 276
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.13 E-value=4.5e-06 Score=83.18 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=60.8
Q ss_pred HHHHHH-hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHH
Q 014494 305 AFLRHI-ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERR 379 (423)
Q Consensus 305 ~fl~~i-~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~ 379 (423)
.++.++ ++++++++|+|++++.. .+..++..+ +.++|.|+|+||+|+.... ...+.+.+.
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~------------s~~~~l~~~---l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG------------SFIPGLPRF---AADNPILLVGNKADLLPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG------------GCCSSHHHH---CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEEEECCCCCC------------chhhHHHHH---hCCCCEEEEEEChhcCCCccCHHHHHHHHHHH
Confidence 455555 77889999999997421 122222222 2379999999999997542 223333322
Q ss_pred c--CC---CcEEEEecccCcCHHHHHHHHHHHhc
Q 014494 380 V--QG---VPIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 380 ~--~~---~~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+ .+ ..++++||+++.|+++|++.|.+++.
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 2 12 36899999999999999999987764
No 277
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.11 E-value=7.3e-06 Score=79.25 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=82.1
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHcC------CCCC--CC------------------cccce----ecce----
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISRA------KPAV--GH------------------YSFTT----LRPN---- 273 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~------~~~i--~~------------------~~ftT----l~~~---- 273 (423)
+++..+ ...++++|.+|+||||++..|++. ++.. .+ .++.. .+|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~ 170 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAK 170 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHH
Confidence 334444 558899999999999999999742 2111 00 00000 0000
Q ss_pred --EEEEEeCCeeEEEEcCCCCcCCccccccchHHH--HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhh
Q 014494 274 --LGNMNFDDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQ 349 (423)
Q Consensus 274 --~g~v~~~~~~i~l~DtpG~i~~a~~~~~l~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~ 349 (423)
...+...+..++++||||..... ....+.... +..+..+|.+++|+|+... .+... .+..+.
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g------~~~~~-------~~~~~~ 236 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG------QKAYD-------LASKFN 236 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG------GGHHH-------HHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch------HHHHH-------HHHHHH
Confidence 00000134679999999976410 000111111 1234568999999998641 11111 122232
Q ss_pred cccCCCC-eEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 350 EGLSDRP-SLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 350 ~~l~~~P-~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
+ ..| ..+|+||+|..........+.... +.|+.+++ +|+++++|
T Consensus 237 ~---~~~i~gvVlnk~D~~~~~g~~~~~~~~~-~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 237 Q---ASKIGTIIITKMDGTAKGGGALSAVAAT-GATIKFIG--TGEKIDEL 281 (297)
T ss_dssp H---TCTTEEEEEECGGGCTTHHHHHHHHHTT-TCCEEEEE--CSSSTTCE
T ss_pred h---hCCCCEEEEeCCCCCcchHHHHHHHHHH-CcCEEEEe--CCCChhhc
Confidence 2 245 778999999876544333344443 67888887 67777654
No 278
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.09 E-value=7.4e-06 Score=81.62 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=59.5
Q ss_pred HHHHHHh-ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChH----HHHHHHHHH
Q 014494 305 AFLRHIE-RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAE----EVYEELERR 379 (423)
Q Consensus 305 ~fl~~i~-~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~----~~~~~l~~~ 379 (423)
.+++++. .++++++|+|++++ . ..+..++..+ +.++|.|+|+||+|+.... ...+.+...
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~---------~---~~~~~~l~~~---~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDF---------N---GSWLPGLHRF---VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS 125 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSH---------H---HHCCTTHHHH---SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhccCcEEEEEEECCCC---------c---ccHHHHHHHH---hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH
Confidence 4455555 45699999999862 1 2233344433 2379999999999997542 222222221
Q ss_pred c--CCC---cEEEEecccCcCHHHHHHHHHHHhc
Q 014494 380 V--QGV---PIYPVCAVLEEGVPELKVGLRMLVN 408 (423)
Q Consensus 380 ~--~~~---~ii~vSA~~g~gi~eL~~~i~~~l~ 408 (423)
+ .+. +++++||+++.|+++|++.|.++..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 1 133 7899999999999999999987653
No 279
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.99 E-value=1.5e-05 Score=91.61 Aligned_cols=151 Identities=19% Similarity=0.298 Sum_probs=92.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------EEE-EcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------ITV-ADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i~l-~DtpG 291 (423)
=++++|+++.+..++|||++|||||||++.|.+. .+|..|.+.+++.. +-+ .-.|=
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCcce
Confidence 3689999999999999999999999999999997 66777888877631 211 12222
Q ss_pred CcCCc-cccccc------hHHHHHHHhccceeEEEEecCCCCCC----CCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGA-HENRGL------GHAFLRHIERTKVLAYVVDLASGLDG----RKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a-~~~~~l------~~~fl~~i~~ad~ll~VvD~s~~~~~----~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..+. .+|.-+ .....+.++.|.+-=++-...+..+- .-...+..+.+++ ++++++...|.|++
T Consensus 503 Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi-----aiARAl~~~~~Ili 577 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI-----AIARALVRNPKILL 577 (1321)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH-----HHHHHHTTCCSEEE
T ss_pred eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH-----HHHHHHccCCCEEE
Confidence 22110 011111 11223333333211111111111110 0112466676665 45677888999999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ .-+|......+.+.|.+...+.+++.|++.
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 9 888988777777788777777788888874
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.99 E-value=1.9e-05 Score=76.64 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.6
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.......|+++|++|+||||++..|++.
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 33445568999999999999999999753
No 281
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.98 E-value=8e-06 Score=93.70 Aligned_cols=151 Identities=22% Similarity=0.309 Sum_probs=87.4
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPG 291 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG 291 (423)
=+.++|+++.+..++|||++|||||||++.|.+. .+|..|.+.+++.. + .+...|-
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 474 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPV 474 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCC
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCc
Confidence 4679999999999999999999999999999997 55677888777632 1 1222232
Q ss_pred CcCCc-cccccch------HHHHHHHhccceeEEEEecCCCCC----CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 292 LIKGA-HENRGLG------HAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 292 ~i~~a-~~~~~l~------~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
+..+. .++..++ ......++.+.+--++-......+ ......+..+.+++ .+++++...|.|++
T Consensus 475 l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri-----aiARal~~~p~ili 549 (1284)
T 3g5u_A 475 LFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI-----AIARALVRNPKILL 549 (1284)
T ss_dssp CCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH-----HHHHHHHHCCSEEE
T ss_pred cCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH-----HHHHHHhcCCCEEE
Confidence 22210 0111010 111222222221111111111111 11112455665554 34556678899999
Q ss_pred E----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 361 A----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 361 l----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
+ +-+|......+.+.+.....+.+++.||+.
T Consensus 550 LDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 584 (1284)
T 3g5u_A 550 LDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584 (1284)
T ss_dssp EESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSC
T ss_pred EECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 8 778876655566666665567788888874
No 282
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.96 E-value=6.2e-06 Score=78.26 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=60.6
Q ss_pred chHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHHHHHHHHHHc-
Q 014494 302 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEEVYEELERRV- 380 (423)
Q Consensus 302 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~~~~~l~~~~- 380 (423)
...+++.++.++|++++|+|+..+.... .+ .+. + + ++|.|+|+||+|+.+... .+.+.+.+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~---~~--~l~--------l---l-~k~~iivlNK~DL~~~~~-~~~~~~~~~ 72 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATS---AY--GVD--------F---S-RKETIILLNKVDIADEKT-TKKWVEFFK 72 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTS---CT--TSC--------C---T-TSEEEEEEECGGGSCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCc---Ch--HHH--------h---c-CCCcEEEEECccCCCHHH-HHHHHHHHH
Confidence 4457889999999999999998753321 10 011 1 1 799999999999987643 22222222
Q ss_pred -CCCcEEEEecccCcCHHHHHHHHHHH
Q 014494 381 -QGVPIYPVCAVLEEGVPELKVGLRML 406 (423)
Q Consensus 381 -~~~~ii~vSA~~g~gi~eL~~~i~~~ 406 (423)
.+.++ ++||+++.|+++|++.+...
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 25678 99999999999998877554
No 283
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.96 E-value=1.7e-05 Score=75.82 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=67.4
Q ss_pred chHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeC-CCcCCh---HHHHHHHH
Q 014494 302 LGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANK-IDEDGA---EEVYEELE 377 (423)
Q Consensus 302 l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNK-iDl~~~---~~~~~~l~ 377 (423)
+...|..+++.+|.+|||||.++..- .....++..+..-| .-...+.+.|.+|++|| -|++.+ .++.+.|.
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreR----leak~EL~eL~~mL-~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKR----HEWQDEFSHIMAMT-DPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCC----CCHHHHHHHHHHHH-CHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhH----HHHHHHHHHHHHHh-cchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 66678889999999999999987321 12222222211111 00012457899999997 588654 33333322
Q ss_pred --HHcCCCcEEEEecccCcCHHHHHHHHHHHhcccc
Q 014494 378 --RRVQGVPIYPVCAVLEEGVPELKVGLRMLVNGEK 411 (423)
Q Consensus 378 --~~~~~~~ii~vSA~~g~gi~eL~~~i~~~l~~~~ 411 (423)
..-..+.|..+||.+|+|+.+-++||.+.+....
T Consensus 275 L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 275 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp GGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred CccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 1114567999999999999999999998886543
No 284
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.96 E-value=7.1e-06 Score=94.13 Aligned_cols=151 Identities=21% Similarity=0.301 Sum_probs=86.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCee------------E-EEEcCCCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQ------------I-TVADIPGL 292 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~------------i-~l~DtpG~ 292 (423)
+.++|+++.+..|||||++|||||||++.|.+. .+|..|.+.+++.. + .+..-|-+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCC
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCCcc
Confidence 568999999999999999999999999999997 44555666555421 1 11111211
Q ss_pred cCC-ccccc-------cc-hHHHHHHHhccceeEEEEecCCCCC----CCCCCCcHHHHHHHHHHHHhhhcccCCCCeEE
Q 014494 293 IKG-AHENR-------GL-GHAFLRHIERTKVLAYVVDLASGLD----GRKGIKPWKQLRDLIIELEHHQEGLSDRPSLV 359 (423)
Q Consensus 293 i~~-a~~~~-------~l-~~~fl~~i~~ad~ll~VvD~s~~~~----~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~Ii 359 (423)
..+ ..++. .. .......++.+.+--++-......+ ......+..+.+++ .+++++...|.|+
T Consensus 1119 ~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv-----~iARal~~~p~iL 1193 (1284)
T 3g5u_A 1119 FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI-----AIARALVRQPHIL 1193 (1284)
T ss_dssp CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH-----HHHHHHHHCCSSE
T ss_pred ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH-----HHHHHHHcCCCEE
Confidence 111 00000 01 1112222222221111111111111 01112456666555 3455667889999
Q ss_pred EE----eCCCcCChHHHHHHHHHHcCCCcEEEEeccc
Q 014494 360 VA----NKIDEDGAEEVYEELERRVQGVPIYPVCAVL 392 (423)
Q Consensus 360 Vl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~ 392 (423)
++ +-+|......+.+.+.+...+.+++.||+..
T Consensus 1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l 1230 (1284)
T 3g5u_A 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230 (1284)
T ss_dssp EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCT
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCH
Confidence 98 8888877777777787766677888888753
No 285
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.96 E-value=4.6e-06 Score=81.36 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCcCCh-HHHHHHHHHHcCCCcEEEEecccCcCHHHHH
Q 014494 355 RPSLVVANKIDEDGA-EEVYEELERRVQGVPIYPVCAVLEEGVPELK 400 (423)
Q Consensus 355 ~P~IiVlNKiDl~~~-~~~~~~l~~~~~~~~ii~vSA~~g~gi~eL~ 400 (423)
...++++||.|+.+. ..+.+.+++..++.+++.+|+- ...++.++
T Consensus 151 ~ad~ill~k~dl~de~~~l~~~l~~l~~~~~ii~~sh~-~~~~~~l~ 196 (318)
T 1nij_A 151 YADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHG-DIDLGLLF 196 (318)
T ss_dssp TCSEEEEECTTTCSCTHHHHHHHHHHCSSSCEEECCSS-CCCGGGGS
T ss_pred hCCEEEEECcccCCHHHHHHHHHHHhCCCCeEEEeccc-CCCHHHHh
Confidence 456778899999876 6777777776677778877753 33344433
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.93 E-value=3.2e-05 Score=76.68 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=27.6
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.++|+++.+..|+|||++|||||||++.|++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35666777889999999999999999999874
No 287
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.88 E-value=1.2e-05 Score=81.93 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC---------------CCCCCCcccceecceEEEEEeC-----------CeeEEEEcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA---------------KPAVGHYSFTTLRPNLGNMNFD-----------DIQITVADI 289 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~---------------~~~i~~~~ftTl~~~~g~v~~~-----------~~~i~l~Dt 289 (423)
..|+|+|.+++|||||||.|.+. +..+-....+|...+.|...+. +..++++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 48999999999999999999864 1222222336667778887774 257999999
Q ss_pred CCCcCC
Q 014494 290 PGLIKG 295 (423)
Q Consensus 290 pG~i~~ 295 (423)
||+...
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998753
No 288
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.87 E-value=5.8e-06 Score=86.43 Aligned_cols=54 Identities=9% Similarity=0.012 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHcCCCcEEEEecc
Q 014494 333 KPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRVQGVPIYPVCAV 391 (423)
Q Consensus 333 ~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~~~~~ii~vSA~ 391 (423)
.+..+.+++ .++.+|...|.|+++ +-+|......+.+.|++...+..++.||+.
T Consensus 139 LSgGe~Qrv-----~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHd 196 (538)
T 3ozx_A 139 LSGGGLQRL-----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196 (538)
T ss_dssp CCHHHHHHH-----HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCHHHHHHH-----HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 455555544 344567789999999 888887777777777776556678888764
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=5.1e-05 Score=74.07 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=81.1
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC------CCCC--CCccc-------cee-----cceEEEE-E-------
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA------KPAV--GHYSF-------TTL-----RPNLGNM-N------- 278 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~------~~~i--~~~~f-------tTl-----~~~~g~v-~------- 278 (423)
.++|..+....|+++|++|+||||++..|++. ++.. .+... .+. ......+ .
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p 176 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP 176 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH
Confidence 34555566678999999999999999998753 1111 11100 011 1223333 1
Q ss_pred ------------eCCeeEEEEcCCCCcCCccccccchHHH---HHHH-----hccceeEEEEecCCCCCCCCCCCcHHHH
Q 014494 279 ------------FDDIQITVADIPGLIKGAHENRGLGHAF---LRHI-----ERTKVLAYVVDLASGLDGRKGIKPWKQL 338 (423)
Q Consensus 279 ------------~~~~~i~l~DtpG~i~~a~~~~~l~~~f---l~~i-----~~ad~ll~VvD~s~~~~~~~~~~~~~~~ 338 (423)
..++.++|+||||...... .+...+ ...+ ..+|.+++|+|+.. . ...+
T Consensus 177 ~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~---~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~--------~-~~~l 244 (320)
T 1zu4_A 177 ASVVFDAIKKAKEQNYDLLLIDTAGRLQNKT---NLMAELEKMNKIIQQVEKSAPHEVLLVIDATT--------G-QNGV 244 (320)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCGGGHH---HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG--------T-HHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccccH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCC--------c-HHHH
Confidence 0235789999999764211 011111 1112 13678899999864 1 2233
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEeCCCcCChH-HHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 339 RDLIIELEHHQEGLSDRPSLVVANKIDEDGAE-EVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 339 ~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
.. ...+... -...=+|+||+|....- ..+. +...+ +.|+.+++ .|+.+++|
T Consensus 245 ~~----~~~~~~~--~~i~GvVltk~d~~~~~g~~~~-~~~~~-~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 245 IQ----AEEFSKV--ADVSGIILTKMDSTSKGGIGLA-IKELL-NIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp HH----HHHHTTT--SCCCEEEEECGGGCSCTTHHHH-HHHHH-CCCEEEEE--CSSSTTCE
T ss_pred HH----HHHHhhc--CCCcEEEEeCCCCCCchhHHHH-HHHHH-CcCEEEEe--CCCCcccc
Confidence 22 2233322 12345788999975432 3333 33333 57887776 56666543
No 290
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.84 E-value=6.6e-06 Score=87.16 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=76.6
Q ss_pred eeeeeccCC-----CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCCeeEEEEcCCCCcCCcccccc
Q 014494 227 ELILELKSI-----ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDDIQITVADIPGLIKGAHENRG 301 (423)
Q Consensus 227 ~l~lelk~~-----~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG~i~~a~~~~~ 301 (423)
.++|++..+ ..++|+|++|||||||+++|+|.....+..... ....+.+.. +..-.... .
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~--~~~i~~~~q--------~~~~~~~~-t---- 429 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--KLNVSMKPQ--------KIAPKFPG-T---- 429 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCC--SCCEEEECS--------SCCCCCCS-B----
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCcc--CCcEEEecc--------cccccCCc-c----
Confidence 466777666 679999999999999999999974433221110 011111111 00000000 0
Q ss_pred chHHHHHHH-------hccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChH
Q 014494 302 LGHAFLRHI-------ERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAE 370 (423)
Q Consensus 302 l~~~fl~~i-------~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~ 370 (423)
....+...+ ..++-++-.+++.+..+......+..+.+++. ++.+|...|.|+++ +.+|.....
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~-----iAraL~~~p~lLlLDEPT~gLD~~~~~ 504 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA-----IVLALGIPADIYLIDEPSAYLDSEQRI 504 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH-----HHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH-----HHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence 000000000 00011111222233233333456677776653 45577899999999 888877666
Q ss_pred HHHHHHHHHc--CCCcEEEEec
Q 014494 371 EVYEELERRV--QGVPIYPVCA 390 (423)
Q Consensus 371 ~~~~~l~~~~--~~~~ii~vSA 390 (423)
.+++.|++.. .+.+++.||+
T Consensus 505 ~i~~ll~~l~~~~g~tviivtH 526 (608)
T 3j16_B 505 ICSKVIRRFILHNKKTAFIVEH 526 (608)
T ss_dssp HHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHHHHHHhCCCEEEEEeC
Confidence 6666666543 2567787776
No 291
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.82 E-value=4.9e-06 Score=87.04 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 333 KPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 333 ~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
.+..+.+++ .++.+|...|.|+++ |.+|......+++.|++.. .+..++.||+.
T Consensus 159 LSgGekQRv-----~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 159 LSGGELQRV-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp CCHHHHHHH-----HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCHHHHHHH-----HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 455555544 344567789999999 8899877776666666543 36678888864
No 292
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.81 E-value=4e-06 Score=88.78 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=26.0
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.+..+..++|+|++||||||||+.|+|..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45678899999999999999999999973
No 293
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.68 E-value=7.3e-06 Score=86.84 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHHhhhcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 333 KPWKQLRDLIIELEHHQEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 333 ~~~~~~~~l~~eL~~~~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
.+..+.+++ .++.+|...|.|+++ |.+|......+.+.|++.. .+..++.||+.
T Consensus 229 LSGGekQRv-----aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 229 LSGGELQRV-----AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp CCHHHHHHH-----HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCHHHHHHH-----HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 455555554 344567789999999 8889877777666666553 35677777763
No 294
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.64 E-value=4.7e-05 Score=73.51 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC-CCC-Ccccceecce--------------EE--E-------------EEeCCe
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP-AVG-HYSFTTLRPN--------------LG--N-------------MNFDDI 282 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~-~i~-~~~ftTl~~~--------------~g--~-------------v~~~~~ 282 (423)
....|+|+|++||||||++..|++.-. ..+ ...+.+.++. .+ . ....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 345899999999999999999975311 000 0000000000 00 0 011346
Q ss_pred eEEEEcCCCCcCCccccccchHHHHHHHh--ccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 283 QITVADIPGLIKGAHENRGLGHAFLRHIE--RTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 283 ~i~l~DtpG~i~~a~~~~~l~~~fl~~i~--~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
.++|+||||...... .+...+...+. ..+.+++|+|++.. ...+..+.. .+. . . ...-+|
T Consensus 184 dlvIiDT~G~~~~~~---~~~~el~~~l~~~~~~~~~lVl~at~~---------~~~~~~~~~---~~~-~-l-~~~giV 245 (296)
T 2px0_A 184 DHVFVDTAGRNFKDP---QYIDELKETIPFESSIQSFLVLSATAK---------YEDMKHIVK---RFS-S-V-PVNQYI 245 (296)
T ss_dssp SEEEEECCCCCTTSH---HHHHHHHHHSCCCTTEEEEEEEETTBC---------HHHHHHHTT---TTS-S-S-CCCEEE
T ss_pred CEEEEeCCCCChhhH---HHHHHHHHHHhhcCCCeEEEEEECCCC---------HHHHHHHHH---HHh-c-C-CCCEEE
Confidence 899999999864211 12222222222 25667888888751 223333222 121 1 1 234567
Q ss_pred EeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCH
Q 014494 361 ANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGV 396 (423)
Q Consensus 361 lNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi 396 (423)
+||+|........-.+.... +.|+.+++ .|+++
T Consensus 246 ltk~D~~~~~g~~~~~~~~~-~~pi~~i~--~ge~v 278 (296)
T 2px0_A 246 FTKIDETTSLGSVFNILAES-KIGVGFMT--NGQNV 278 (296)
T ss_dssp EECTTTCSCCHHHHHHHHTC-SCCCSEEC--CSSCT
T ss_pred EeCCCcccchhHHHHHHHHH-CcCEEEEE--CCCCC
Confidence 79999865422222233333 56666665 45555
No 295
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=8.1e-06 Score=71.51 Aligned_cols=34 Identities=29% Similarity=0.187 Sum_probs=28.9
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRAKP 260 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~ 260 (423)
.++|+++.+..++|+|++|||||||++.|++..+
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3556667788999999999999999999998654
No 296
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.53 E-value=2.7e-05 Score=75.57 Aligned_cols=58 Identities=29% Similarity=0.232 Sum_probs=34.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCccc-------ceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~f-------tTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
..+..++|+|++|||||||+|+|++.. +..+...+ +|.... .+... ...++||||+..
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccc
Confidence 345589999999999999999999863 34444432 232221 22222 357899999875
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.52 E-value=0.00023 Score=72.01 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC------CCCC--CCcc-------cceec--ceEEEEE------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA------KPAV--GHYS-------FTTLR--PNLGNMN------------------ 278 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~------~~~i--~~~~-------ftTl~--~~~g~v~------------------ 278 (423)
....|+++|++|+||||++..|++. ++.. .++. +.+.. .....+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999753 1110 0100 00000 0000111
Q ss_pred -eCCeeEEEEcCCCCcCCccccccchHHH--HHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCC
Q 014494 279 -FDDIQITVADIPGLIKGAHENRGLGHAF--LRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 355 (423)
Q Consensus 279 -~~~~~i~l~DtpG~i~~a~~~~~l~~~f--l~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 355 (423)
..+..++|+||||..... ..+.... ...+-.++.+++|+|+... .+... .+..+.+. -.
T Consensus 177 ~~~~~DvVIIDTaG~l~~d---~~l~~el~~i~~~~~pd~vlLVvDa~tg------q~av~-------~a~~f~~~--l~ 238 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTG------QEALS-------VARAFDEK--VG 238 (425)
T ss_dssp HHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGT------THHHH-------HHHHHHHH--TC
T ss_pred HHCCCCEEEEcCCCccccc---HHHHHHHHHhhhccCCceEEEEEeccch------HHHHH-------HHHHHHhc--CC
Confidence 123578999999975421 1122211 1222357888999998641 11221 22233322 13
Q ss_pred CeEEEEeCCCcCChHHHHHHHHHHcCCCcEEEEecccCcCHH
Q 014494 356 PSLVVANKIDEDGAEEVYEELERRVQGVPIYPVCAVLEEGVP 397 (423)
Q Consensus 356 P~IiVlNKiDl~~~~~~~~~l~~~~~~~~ii~vSA~~g~gi~ 397 (423)
..-+|+||+|........-.+.... +.|+.+++ .|+.++
T Consensus 239 i~GVIlTKlD~~~~~g~alsi~~~~-g~PI~flg--~Ge~~~ 277 (425)
T 2ffh_A 239 VTGLVLTKLDGDARGGAALSARHVT-GKPIYFAG--VSEKPE 277 (425)
T ss_dssp CCEEEEESGGGCSSCHHHHHHHHHH-CCCEEEEE--CSSSGG
T ss_pred ceEEEEeCcCCcccHHHHHHHHHHH-CCCEEEEe--CCCChh
Confidence 4677899999764322222233333 56787776 344444
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00056 Score=66.08 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.9
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
++|+++.+..++|+|++|||||||++.|++.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5556677779999999999999999999875
No 299
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.51 E-value=0.00013 Score=70.21 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC------CCCC--CCc--c-----cceec--ceEEEEE------------------
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA------KPAV--GHY--S-----FTTLR--PNLGNMN------------------ 278 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~------~~~i--~~~--~-----ftTl~--~~~g~v~------------------ 278 (423)
....++++|.+|+||||++..|++. +... .+. + +.++. .....+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999753 1110 000 0 00000 0011111
Q ss_pred -eCCeeEEEEcCCCCcCCccccccchHHHH--HHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCC
Q 014494 279 -FDDIQITVADIPGLIKGAHENRGLGHAFL--RHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDR 355 (423)
Q Consensus 279 -~~~~~i~l~DtpG~i~~a~~~~~l~~~fl--~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~ 355 (423)
..+..++++||||...... .+...+. ...-.++.+++|+|... ..+.+. .+..+.+. -.
T Consensus 177 ~~~~~D~viiDtpp~~~~d~---~~~~~l~~~~~~~~~~~~~lv~~~~~---------~~~~~~----~~~~~~~~--~~ 238 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDE---PLMGELARLKEVLGPDEVLLVLDAMT---------GQEALS----VARAFDEK--VG 238 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGG---------THHHHH----HHHHHHHH--TC
T ss_pred HhCCCCEEEEeCCCCccccH---HHHHHHHHHhhhcCCCEEEEEEeCCC---------cHHHHH----HHHHHhhc--CC
Confidence 0235789999998653210 1111111 11224778888999763 122222 22233322 13
Q ss_pred CeEEEEeCCCcCChH-HHHHHHHHHcCCCcEEEEecccCcCHHHH
Q 014494 356 PSLVVANKIDEDGAE-EVYEELERRVQGVPIYPVCAVLEEGVPEL 399 (423)
Q Consensus 356 P~IiVlNKiDl~~~~-~~~~~l~~~~~~~~ii~vSA~~g~gi~eL 399 (423)
..-+|+||+|....- ..+..+.. . +.|+.+++ +|+++++|
T Consensus 239 i~givlnk~d~~~~~g~~~~~~~~-~-~~pi~~i~--~g~~~~dl 279 (295)
T 1ls1_A 239 VTGLVLTKLDGDARGGAALSARHV-T-GKPIYFAG--VSEKPEGL 279 (295)
T ss_dssp CCEEEEECGGGCSSCHHHHHHHHH-H-CCCEEEEC--------CC
T ss_pred CCEEEEECCCCCccHHHHHHHHHH-H-CcCEEEEe--CCCCcccc
Confidence 456789999976532 33333333 3 67888887 56666543
No 300
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.45 E-value=0.0001 Score=79.03 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=25.1
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHH
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLL 252 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLL 252 (423)
..++|++..+..++|+|++|||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 468899999999999999999999996
No 301
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.44 E-value=5.9e-05 Score=69.26 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=24.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
..++|++..+..++|+|++|||||||+++|++..
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3577888899999999999999999999999864
No 302
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.43 E-value=7.8e-05 Score=72.29 Aligned_cols=82 Identities=11% Similarity=0.138 Sum_probs=56.0
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH---HHHHHHHHc--CCCc
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE---VYEELERRV--QGVP 384 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~---~~~~l~~~~--~~~~ 384 (423)
+.++|.+++|+|+..+. .....+.+++..... .++|.+||+||+|+.+..+ ..+.+.+.+ .+.+
T Consensus 84 ~anvD~v~~V~~~~~p~------~~~~~i~r~L~~~~~-----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPS------FSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp EECCCEEEEEEESTTTT------CCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCEEEEEEeCCCCC------CCHHHHHHHHHHHHH-----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 67889999999998642 233344444332221 3789999999999987643 234444444 2578
Q ss_pred EEEEecccCcCHHHHHHH
Q 014494 385 IYPVCAVLEEGVPELKVG 402 (423)
Q Consensus 385 ii~vSA~~g~gi~eL~~~ 402 (423)
++++||.++.|+++|++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 999999999988876543
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.40 E-value=0.0007 Score=68.71 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHH
Q 014494 235 IADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Ls 256 (423)
...|+++|.+|+||||+...|+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999999987
No 304
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.39 E-value=0.00021 Score=68.97 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=36.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC-CCCCCCccc-------ceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA-KPAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~-~~~i~~~~f-------tTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
.+..++|+|++|||||||+|+|+ . .+..+...+ +|..+ ..+... .--.+.|+||+..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFG-KGSFVGDTPGFSK 228 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEET-TTEEEESSCCCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcC-CCcEEEECcCcCc
Confidence 34589999999999999999999 5 344555544 22221 122222 2347789999853
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.38 E-value=8.4e-05 Score=65.42 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.8
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
++|++..+..++|+|+||||||||++++.+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 678888999999999999999999998653
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.35 E-value=4.3e-05 Score=69.38 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCCC--CCCCcccceecceEEEEEeCCeeEEEEcCCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLGNMNFDDIQITVADIPG 291 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~~--~i~~~~ftTl~~~~g~v~~~~~~i~l~DtpG 291 (423)
.+..|+|+|++|||||||+++|.+..+ .....+.||..|..|. .++..+.++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 455799999999999999999997654 2345566777776654 3444555555443
No 307
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=9.4e-05 Score=71.39 Aligned_cols=58 Identities=31% Similarity=0.347 Sum_probs=34.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC-CCCCCccc-------ceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK-PAVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~-~~i~~~~f-------tTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
....++|+|++|||||||||+|++.. +..+...+ +|... ..+.+. ....++|+||+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~~~-~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLKFD-FGGYVVDTPGFAN 233 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEECT-TSCEEESSCSSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEEcC-CCCEEEECcCCCc
Confidence 45589999999999999999999863 33444433 22111 112222 2346789999754
No 308
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.30 E-value=0.00011 Score=72.78 Aligned_cols=57 Identities=28% Similarity=0.230 Sum_probs=35.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcCCC--CCCCccc-------ceecceEEEEEeCCeeEEEEcCCCCcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSF-------TTLRPNLGNMNFDDIQITVADIPGLIK 294 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~~~--~i~~~~f-------tTl~~~~g~v~~~~~~i~l~DtpG~i~ 294 (423)
+..++|+|++|||||||+|+|++... ..+.... +|.....+. +. ....++|+||+.+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~--v~-q~~~l~dtpgv~e 280 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYH--FP-HGGDVIDSPGVRE 280 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEE--CT-TSCEEEECHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEE--EC-CCCEecCcccHHH
Confidence 34799999999999999999998743 3333322 233222232 22 2345789999866
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.25 E-value=0.00015 Score=64.94 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.1
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
++..+..++|+|++|||||||++.|++..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45566789999999999999999999863
No 310
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.19 E-value=0.0013 Score=65.00 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=52.1
Q ss_pred HhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEEeCCCcCChHH--HHHHHHHHc--CCCcE
Q 014494 310 IERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVANKIDEDGAEE--VYEELERRV--QGVPI 385 (423)
Q Consensus 310 i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVlNKiDl~~~~~--~~~~l~~~~--~~~~i 385 (423)
+.++|.+++|. +..+ ......+..++..... .++|.|||+||+|+.+... ..+.+...+ .+.++
T Consensus 128 ~anvD~v~iv~-a~~P------~~~~~~i~r~L~~a~~-----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v 195 (358)
T 2rcn_A 128 AANIDQIVIVS-AILP------ELSLNIIDRYLVGCET-----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRV 195 (358)
T ss_dssp EECCCEEEEEE-ESTT------TCCHHHHHHHHHHHHH-----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCE
T ss_pred HhcCCEEEEEE-eCCC------CCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcE
Confidence 46678888664 4332 1223344444322222 2688899999999987654 133333333 46789
Q ss_pred EEEecccCcCHHHHHHHH
Q 014494 386 YPVCAVLEEGVPELKVGL 403 (423)
Q Consensus 386 i~vSA~~g~gi~eL~~~i 403 (423)
+++||.++.|+++|...+
T Consensus 196 ~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 196 LMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHhc
Confidence 999999999999987654
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.17 E-value=0.00019 Score=64.97 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=23.9
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
++..+..++|+|++|||||||+++|++..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45667789999999999999999999864
No 312
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.13 E-value=0.00028 Score=78.16 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=39.2
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecceEEEEEeCC
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPNLGNMNFDD 281 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~~g~v~~~~ 281 (423)
-..++|++..+..++|+|++|||||||++.|+|. +.|..|.+.+.+
T Consensus 689 L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 3679999999999999999999999999999997 445667766643
No 313
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.06 E-value=0.00023 Score=65.49 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.1
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCCC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAKP 260 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~~ 260 (423)
++.+..++|+|++|||||||+++|++..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45666899999999999999999998643
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.04 E-value=0.00021 Score=65.75 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=21.8
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHH-cCC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAIS-RAK 259 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Ls-g~~ 259 (423)
..++|.+..+..++|+|++|||||||++.|+ +..
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3467788888999999999999999999999 763
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00031 Score=62.13 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCC--CCCCcccceecceEE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKP--AVGHYSFTTLRPNLG 275 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~--~i~~~~ftTl~~~~g 275 (423)
..++|+|++|||||||+++|.+..+ .......+|..|..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 4799999999999999999998543 223344555555444
No 316
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.00 E-value=0.00018 Score=71.25 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.0
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+++.++.+..++|+|++|||||||+++|++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 456778889999999999999999999999996
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.00 E-value=0.00029 Score=65.60 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=24.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..|||+|++|||||||++.|++.
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 457788888889999999999999999999874
No 318
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.98 E-value=0.00023 Score=68.94 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.++|+++.+..++|+|++|||||||++.|++.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 346778888999999999999999999999975
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.97 E-value=0.00034 Score=63.01 Aligned_cols=24 Identities=42% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..++|+|++|||||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999885
No 320
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.96 E-value=0.00019 Score=73.71 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=29.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++.. ..++|+|++||||||||++|++.
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 468888988 99999999999999999999875
No 321
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.96 E-value=0.00014 Score=71.13 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=28.8
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+++.++.+..++|+|++|||||||+++|++.
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45677788889999999999999999999996
No 322
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.87 E-value=0.00048 Score=61.19 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.++|+|+||||||||++.|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.82 E-value=0.00028 Score=62.44 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=27.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcCCCCCCCcccceecce---EEEEEeCCeeEE
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRAKPAVGHYSFTTLRPN---LGNMNFDDIQIT 285 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~~~~i~~~~ftTl~~~---~g~v~~~~~~i~ 285 (423)
..|+|+|++|||||||++.|.+. +.+. .|.+.+++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCcccc
Confidence 47999999999999999999986 4444 688877765543
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.79 E-value=0.00061 Score=60.28 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..|+|+|+||||||||++.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34457999999999999999999985
No 325
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.00027 Score=72.29 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=29.4
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.++|+++.+..|+|+|++|||||||++.|+|.
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 36778889999999999999999999999997
No 326
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.76 E-value=0.0047 Score=60.97 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
....|+|+|++|||||||+++|++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3448999999999999999999985
No 327
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.75 E-value=0.00045 Score=63.05 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=24.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..+..++|+|++|||||||+++|++.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355668999999999999999999997
No 328
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.72 E-value=0.0053 Score=67.93 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=27.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHH
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAI 255 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~L 255 (423)
..++|....+..++|+|+|||||||||+.+
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 467788888889999999999999999998
No 329
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.67 E-value=0.0009 Score=65.91 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=27.3
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
|.+..+.+++|+|++|||||||++.|++.
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 77888899999999999999999999996
No 330
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.66 E-value=0.00086 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcCC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.++|+|++|||||||+++|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999864
No 331
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.65 E-value=0.00078 Score=60.92 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..|+|+|++|||||||+++|++.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999985
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.65 E-value=0.0011 Score=59.33 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=23.8
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
+..+..|+|+|++|||||||++.|.+.-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455689999999999999999999864
No 333
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.001 Score=59.59 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..++|.+..+..|+|+|++||||||+.+.|+.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 46778888888999999999999999999985
No 334
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.58 E-value=0.001 Score=67.59 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=28.6
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+ |.+..+..++|+|++|||||||++.|++.
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35 78889999999999999999999999996
No 335
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.56 E-value=0.00064 Score=64.25 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..+..|+|+|++|||||||+++|++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 344558999999999999999999985
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.52 E-value=0.00063 Score=70.52 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=27.5
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+++.++.+..++|+|++|||||||+++|++.
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34555677778999999999999999999986
No 337
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.49 E-value=0.016 Score=51.46 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=51.0
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEEE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVVA 361 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiVl 361 (423)
..++++|+|+... ......+..+|.+++++..+. .. .....+...+..+...-...+..+|+
T Consensus 76 yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~--------~~-~~~~~~~~~l~~~~~~~~~~~~~vv~ 137 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSP--------LD-FSAAGSVVTVLEAQAYSRKVEARFLI 137 (206)
T ss_dssp SSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCT--------TT-HHHHHHHHHHHTTSCGGGCCEEEEEE
T ss_pred CCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCH--------HH-HHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 6789999998643 233456677999999998875 34 56666666665442212245668899
Q ss_pred eCCCcCCh--HHHHHHHHH
Q 014494 362 NKIDEDGA--EEVYEELER 378 (423)
Q Consensus 362 NKiDl~~~--~~~~~~l~~ 378 (423)
|++|.... .+..+.+++
T Consensus 138 N~~~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 138 TRKIEMATMLNVLKESIKD 156 (206)
T ss_dssp CSBCTTEEEEHHHHHHHHH
T ss_pred eccCCCchHHHHHHHHHHH
Confidence 99996432 344444544
No 338
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.46 E-value=0.0018 Score=58.57 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
.+..|+|+|++|||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999864
No 339
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.44 E-value=0.0016 Score=59.78 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..+..++|+|+||||||||++.|++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 56677999999999999999999983
No 340
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.44 E-value=0.0015 Score=58.59 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|+|++|||||||++.|++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 47899999999999999999885
No 341
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.39 E-value=0.0014 Score=59.10 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..|+|+|++|||||||++.|++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999985
No 342
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.39 E-value=0.002 Score=71.30 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=30.6
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+..++|+|++|||||||+++|++.
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999999999999963
No 343
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.36 E-value=0.0019 Score=57.85 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+..|+|+|++|||||||++.|++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4558999999999999999999874
No 344
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.35 E-value=0.0019 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
...|+|+|++|||||||.+.|++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.35 E-value=0.0023 Score=56.18 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.6
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.+++..+ ..+|+|++|||||||+.+|...
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44556555 7899999999999999999764
No 346
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.34 E-value=0.0014 Score=59.33 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..+..++|+|+||||||||++.|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455668999999999999999999983
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.25 E-value=0.0019 Score=62.59 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.+..|||+|++|||||||++.|++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34458999999999999999999985
No 348
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.24 E-value=0.0014 Score=64.65 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.3
Q ss_pred eeeeeccC--CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 227 ELILELKS--IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 227 ~l~lelk~--~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+.+.+.. ..+++|+|++|||||||++.|++.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 35555666 779999999999999999999996
No 349
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.18 E-value=0.0022 Score=56.32 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=22.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..++|+|+||+|||||+++|++.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 350
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.13 E-value=0.0026 Score=56.17 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.++|+|++|||||||++.|++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999986
No 351
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0015 Score=65.34 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=28.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|++..+ .++|+|+|||||||||++|.+.
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4678889888 9999999999999999998653
No 352
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.01 E-value=0.0037 Score=57.84 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHHH---cC
Q 014494 236 ADVGLVGMPSAGKSTLLGAIS---RA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Ls---g~ 258 (423)
..|+|+|+||||||||++.|+ +.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 489999999999999999999 75
No 353
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.98 E-value=0.0024 Score=68.29 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.2
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHH
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
..++|++..+..++|+|++|||||||++.|+
T Consensus 339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 5688999999999999999999999998754
No 354
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.85 E-value=0.0041 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|++||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 37999999999999999999863
No 355
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.83 E-value=0.0042 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..|+|+|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999999875
No 356
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.78 E-value=0.086 Score=47.42 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=49.7
Q ss_pred eeEEEEcCCCC-cCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeEEE
Q 014494 282 IQITVADIPGL-IKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSLVV 360 (423)
Q Consensus 282 ~~i~l~DtpG~-i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~IiV 360 (423)
..++++|+|+. .. ......+..+|.++.++..+. ........++..+..+. ..+..+|
T Consensus 68 yD~viiD~p~~~~~---------~~~~~~l~~aD~viiv~~~~~--------~~~~~~~~~~~~l~~~~----~~~~~vv 126 (209)
T 3cwq_A 68 YQNIVIDTQARPED---------EDLEALADGCDLLVIPSTPDA--------LALDALMLTIETLQKLG----NNRFRIL 126 (209)
T ss_dssp CSEEEEEEECCCSS---------SHHHHHHHTSSEEEEEECSSH--------HHHHHHHHHHHHHHHTC----SSSEEEE
T ss_pred CCEEEEeCCCCcCc---------HHHHHHHHHCCEEEEEecCCc--------hhHHHHHHHHHHHHhcc----CCCEEEE
Confidence 67899999986 33 123455678999999988764 34455555555554421 4678899
Q ss_pred EeCCCcCC-h--HHHHHHHHH
Q 014494 361 ANKIDEDG-A--EEVYEELER 378 (423)
Q Consensus 361 lNKiDl~~-~--~~~~~~l~~ 378 (423)
+|++|... . .+..+.+++
T Consensus 127 ~N~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 127 LTIIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp ECSBCCTTSCHHHHHHHHHHH
T ss_pred EEecCCccchHHHHHHHHHHH
Confidence 99999865 2 344455554
No 357
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.76 E-value=0.0025 Score=61.42 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+..|||+|++|||||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999999985
No 358
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.71 E-value=0.0068 Score=59.94 Aligned_cols=28 Identities=39% Similarity=0.380 Sum_probs=23.3
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHH
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
+++++..+ .++|+|+||||||||+++|+
T Consensus 17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45556555 67899999999999999997
No 359
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.031 Score=56.57 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
...-|.|.|+||+|||+|.++|++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999874
No 360
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.69 E-value=0.0041 Score=59.24 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=26.2
Q ss_pred eeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 229 ILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 229 ~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+.+..+..++|+|+||||||||++.|++.
T Consensus 29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345677789999999999999999999875
No 361
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.69 E-value=0.006 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 362
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.66 E-value=0.0069 Score=53.46 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.7
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.......|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34445668999999999999999999864
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.61 E-value=0.007 Score=53.47 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+.++|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999874
No 364
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.55 E-value=0.0035 Score=58.78 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=26.5
Q ss_pred eeeeeccC---CCeEEEECCCCCcHHHHHHHHHc
Q 014494 227 ELILELKS---IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 227 ~l~lelk~---~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
.++|++.. +..|+|+|++||||||+.+.|++
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 35556666 78999999999999999999976
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.53 E-value=0.0078 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHH
Q 014494 234 SIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
.+..|+|+|++||||||+++.|+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999998
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.49 E-value=0.007 Score=54.00 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999987
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.48 E-value=0.0067 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.+..|+|+|.+|||||||.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44458999999999999999999985
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.46 E-value=0.005 Score=58.36 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 014494 238 VGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~ 258 (423)
|+|+|+||+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.46 E-value=0.0076 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|++||||||+.+.|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999873
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.45 E-value=0.0064 Score=60.33 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
++.+..|+|+|++|||||||+++|++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345568999999999999999999985
No 371
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.42 E-value=0.0089 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..|+|+|++|||||||.+.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34557999999999999999999864
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.41 E-value=0.0029 Score=56.60 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=29.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCC--CCCcccceecceEEE
Q 014494 238 VGLVGMPSAGKSTLLGAISRAKPA--VGHYSFTTLRPNLGN 276 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~~~~--i~~~~ftTl~~~~g~ 276 (423)
|.|+|++|||||||++.|....+. .-..+.||..|..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 789999999999999999865442 234556776665554
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.41 E-value=0.0064 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.189 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..++|+|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999985
No 374
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.38 E-value=0.0087 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..+..++|+|+||||||||++.|++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 445668999999999999999999864
No 375
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.08 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..-|.|.|+||+|||+|.+++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346899999999999999999874
No 376
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.31 E-value=0.00041 Score=64.27 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=23.1
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+++.. ..++|+|++||||||||++|++.
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcc
Confidence 33443 46799999999999999999986
No 377
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.26 E-value=0.01 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 378
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.25 E-value=0.0048 Score=64.01 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=26.8
Q ss_pred eeee-eccCCCeEEEECCCCCcHHHHHHH--HHcC
Q 014494 227 ELIL-ELKSIADVGLVGMPSAGKSTLLGA--ISRA 258 (423)
Q Consensus 227 ~l~l-elk~~~~V~LVG~~naGKSTLLn~--Lsg~ 258 (423)
.+++ .+..+..++|+|+||||||||++. +++.
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3455 677888999999999999999999 5664
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.22 E-value=0.0063 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+..|+|+|.+|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4457999999999999999999885
No 380
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.065 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..-|.|.|+||+|||+|.+++++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 346999999999999999999974
No 381
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.17 E-value=0.02 Score=58.03 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=37.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC---C--C------C--CCCcc--cceecceEEEEEeC---------C--eeEEEEc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA---K--P------A--VGHYS--FTTLRPNLGNMNFD---------D--IQITVAD 288 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~---~--~------~--i~~~~--ftTl~~~~g~v~~~---------~--~~i~l~D 288 (423)
...|+++|..++|||+|+|.|.+. . . . ..... .+....+.|...+. + ..++++|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 348999999999999999976521 0 0 0 00111 12233345655542 1 4699999
Q ss_pred CCCCcC
Q 014494 289 IPGLIK 294 (423)
Q Consensus 289 tpG~i~ 294 (423)
|.|+..
T Consensus 147 TEG~~d 152 (457)
T 4ido_A 147 TQGTFD 152 (457)
T ss_dssp ECCBTC
T ss_pred ccCCCC
Confidence 999865
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.13 E-value=0.0079 Score=59.82 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.6
Q ss_pred eeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 229 ILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 229 ~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
++.+..+..++|+|++|+|||||+++|++.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 445667778999999999999999999873
No 383
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.09 E-value=0.0099 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 384
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.08 E-value=0.012 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|++||||||+.+.|+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 385
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.048 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.-|.|.|+||+|||+|.+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999874
No 386
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.06 E-value=0.0099 Score=59.92 Aligned_cols=25 Identities=28% Similarity=0.158 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
....|+|+|++||||||||++|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999885
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.05 E-value=0.0082 Score=55.63 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 014494 238 VGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~ 258 (423)
++|+|+||+|||||+++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999985
No 388
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.013 Score=50.06 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=18.3
Q ss_pred eEEEECCCCCcHHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAI 255 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~L 255 (423)
.|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 389
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.99 E-value=0.013 Score=57.92 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=25.5
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
.+++++..+ .++|+|++|+|||||+++|..
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 356667766 899999999999999999975
No 390
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.89 E-value=0.015 Score=53.03 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=23.3
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..+..++|+|+||||||||+..|++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45667899999999999999999997
No 391
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.015 Score=56.29 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.2
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+.+++..+ ..+|+|+||||||||+.+|..
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 44556555 889999999999999999984
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.84 E-value=0.013 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|||+|++|||||||+++|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 393
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.84 E-value=0.2 Score=48.29 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
-|.|.|+||+|||+|.+++...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 6889999999999999999874
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.79 E-value=0.01 Score=55.88 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 014494 238 VGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 238 V~LVG~~naGKSTLLn~Lsg~ 258 (423)
|+|+|+||+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999985
No 395
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.72 E-value=0.018 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..+..++|+|+||+|||||+..|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44566899999999999999999987
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.71 E-value=0.014 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|++||||||+.+.|+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999974
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.70 E-value=0.017 Score=49.43 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Ls 256 (423)
..+|+|++|||||||+.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.65 E-value=0.017 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 399
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.65 E-value=0.019 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+.++|+|++|||||||+..|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999763
No 400
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.63 E-value=0.022 Score=62.03 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=27.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|. ..+..++|+|++||||||||+.+.+.
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 456666 67779999999999999999999874
No 401
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.56 E-value=0.02 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|.|+|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 402
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.56 E-value=0.18 Score=47.79 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=40.9
Q ss_pred eeEEEEcCCCCcCCccccccchHHHHHHHhccceeEEEEecCCCCCCCCCCCcHHHHHHHHHHHHhhhcccCCCCeE-EE
Q 014494 282 IQITVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVVDLASGLDGRKGIKPWKQLRDLIIELEHHQEGLSDRPSL-VV 360 (423)
Q Consensus 282 ~~i~l~DtpG~i~~a~~~~~l~~~fl~~i~~ad~ll~VvD~s~~~~~~~~~~~~~~~~~l~~eL~~~~~~l~~~P~I-iV 360 (423)
..++|+|||+...... +...+..||.+++|+..+. ........++..+..+... ...+.+ +|
T Consensus 157 yD~ViiD~p~~~~~~~--------~~~~l~~aD~viiv~~~~~--------~s~~~~~~~~~~l~~~~~~-~~~~~~gvV 219 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG--------FAAPLQHADQAVVVTANDF--------DSIYAMNRIIAAVQAKSKN-YKVRLAGCV 219 (307)
T ss_dssp CSEEEEEECCSSCCGG--------GGGGGGTCSEEEEEECSSH--------HHHHHHHHHHHHHHTTTTT-CCCEEEEEE
T ss_pred CCEEEEeCCCccchHH--------HHHHHHHCCEEEEEecCcH--------HHHHHHHHHHHHHHHhhhc-CCCceEEEE
Confidence 5788999987543111 1123567899999887653 3455566666666543211 123333 78
Q ss_pred EeCCCc
Q 014494 361 ANKIDE 366 (423)
Q Consensus 361 lNKiDl 366 (423)
+|+++.
T Consensus 220 ~N~~~~ 225 (307)
T 3end_A 220 ANRSRA 225 (307)
T ss_dssp EESCSC
T ss_pred EecCCc
Confidence 999994
No 403
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.54 E-value=0.023 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..|+|+|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 404
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.48 E-value=0.021 Score=50.45 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 405
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.47 E-value=0.02 Score=63.16 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=28.5
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..++|.+..+..++|+|+|||||||||+.+..
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 56788888888999999999999999999864
No 406
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.44 E-value=0.019 Score=50.31 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.44 E-value=0.021 Score=55.51 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|+|+||+|||||+++|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999875
No 408
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.38 E-value=0.026 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|+|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.36 E-value=0.023 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|+|++||||||+.+.|+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 410
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.35 E-value=0.026 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
No 411
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.35 E-value=0.022 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|+|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 412
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.34 E-value=0.026 Score=49.31 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
...|.|+|++||||||+.+.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 413
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.33 E-value=0.027 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
...|.|+|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.32 E-value=0.024 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
....|+|+|++||||||+.+.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999975
No 415
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.16 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
...-|.|.|+||+|||+|.++|++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3446899999999999999999874
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.28 E-value=0.021 Score=49.91 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|.|+|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 417
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.092 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
...-|.|.|+||+|||+|.+++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3446999999999999999999974
No 418
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.15 E-value=0.03 Score=60.62 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=25.4
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|. +..++|+|++||||||||+.+++.
T Consensus 570 ~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 570 NDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred eeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 345555 779999999999999999999875
No 419
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.02 E-value=0.026 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.031 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|+|++|||||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 420
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.97 E-value=0.02 Score=63.28 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=28.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
-+.++|++..+..++|+|.+|||||||++.|.
T Consensus 658 Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999999999999999853
No 421
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.95 E-value=0.032 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 44799999999999999999975
No 422
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.94 E-value=0.028 Score=52.96 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=23.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..+..++|+|+||+|||||+..|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 55677899999999999999999986
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.93 E-value=0.033 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.237 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
....|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 424
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=93.92 E-value=0.036 Score=55.78 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=23.5
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+.....++|+|++|||||||+.+|++.
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444568999999999999999999764
No 425
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.92 E-value=0.016 Score=63.42 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=29.5
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHH-HHc
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGA-ISR 257 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~-Lsg 257 (423)
-+.++|++..+..++|+|.+|||||||++. |++
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 467899999999999999999999999996 653
No 426
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.91 E-value=0.024 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..|.|+|++||||||+.+.|...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999864
No 427
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.91 E-value=0.036 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..|.|+|++||||||+.+.|+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999975
No 428
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.77 E-value=0.028 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
....|+|+|++||||||+.+.|...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999753
No 429
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.72 E-value=0.035 Score=49.97 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.68 E-value=0.036 Score=49.71 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 431
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.67 E-value=0.036 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.65 E-value=0.035 Score=51.01 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=22.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..|+|.|++||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35568999999999999999999874
No 433
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.59 E-value=0.039 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
...|.|+|++||||||+.+.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 434
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.58 E-value=0.04 Score=48.10 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 435
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.57 E-value=0.039 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 436
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.57 E-value=0.023 Score=59.23 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=24.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+..+..|+|+|++|||||||+++|++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 456678999999999999999999985
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.56 E-value=0.044 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 438
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.54 E-value=0.042 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+.|+|+|++||||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 439
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.51 E-value=0.02 Score=63.20 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.7
Q ss_pred eeeeeeeccCCCeEEEECCCCCcHHHHHHHHH
Q 014494 225 ESELILELKSIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 225 ~~~l~lelk~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
-+.++|++..+..++|+|.+|||||||++.|+
T Consensus 640 Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35688999999999999999999999999853
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.47 E-value=0.039 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..|.|+|+|||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999999975
No 441
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.46 E-value=0.019 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 442
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.41 E-value=0.046 Score=46.78 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.40 E-value=0.044 Score=49.29 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=18.4
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Ls 256 (423)
..+|+|++||||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 67899999999999999985
No 444
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.38 E-value=0.044 Score=47.85 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 445
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.34 E-value=0.058 Score=52.47 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=29.2
Q ss_pred hcccCCCCeEEEE----eCCCcCChHHHHHHHHHHc-CCCcEEEEecc
Q 014494 349 QEGLSDRPSLVVA----NKIDEDGAEEVYEELERRV-QGVPIYPVCAV 391 (423)
Q Consensus 349 ~~~l~~~P~IiVl----NKiDl~~~~~~~~~l~~~~-~~~~ii~vSA~ 391 (423)
+.++...|.++++ +.+|......+.+.|.+.. .+..++.+|+.
T Consensus 266 a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp HHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 3456678889888 8888776666677776654 23467777754
No 446
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.34 E-value=0.33 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.-|.|.|+||+|||+|.++|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.32 E-value=0.043 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 448
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.26 E-value=0.043 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|.+||||||+.+.|...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7999999999999999999875
No 449
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.24 E-value=0.053 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHHc
Q 014494 235 IADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..|+|.|.+||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 450
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.23 E-value=0.047 Score=49.34 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|+|++||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 451
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.20 E-value=0.059 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.20 E-value=0.044 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 453
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.15 E-value=0.049 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|.+||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.14 E-value=0.038 Score=54.17 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.5
Q ss_pred eeccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 230 LELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 230 lelk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+..+..++|+|+||||||||+..|++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34677789999999999999999999875
No 455
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.10 E-value=0.18 Score=54.97 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.9
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.....|.|+|+||+|||||+++|++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 455668999999999999999999985
No 456
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.04 E-value=0.041 Score=47.78 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=16.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 457
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.00 E-value=0.047 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|++|||||||-+.|+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 458
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.96 E-value=0.064 Score=59.96 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.3
Q ss_pred eeeeeeccC-------CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 226 SELILELKS-------IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 226 ~~l~lelk~-------~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..++|.+.. +..++|+|++|+||||||+.+ +.
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 456666654 679999999999999999998 54
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.95 E-value=0.061 Score=49.71 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.-|.|+|+||+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.93 E-value=0.061 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHc
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
....|+|+|++||||||+.+.|+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999985
No 461
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.85 E-value=0.18 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 233 KSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 233 k~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+...-|.|.|+||+|||+|.+++++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34456999999999999999999985
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.82 E-value=0.061 Score=49.13 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.0
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
++....|.|+|+|||||+|....|+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344457889999999999999999753
No 463
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.66 E-value=0.058 Score=48.47 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 464
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.65 E-value=0.041 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|+|+|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999764
No 465
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.64 E-value=0.079 Score=54.64 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=27.8
Q ss_pred eeeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 227 ELILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 227 ~l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
.+.+.+...+.+.++|.+||||||++++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4677888899999999999999999999864
No 466
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.59 E-value=0.097 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.3
Q ss_pred eeeeeeccCCCeEEEECCCCCcHHHHH
Q 014494 226 SELILELKSIADVGLVGMPSAGKSTLL 252 (423)
Q Consensus 226 ~~l~lelk~~~~V~LVG~~naGKSTLL 252 (423)
+.++|++..+..++|+|++|||||||+
T Consensus 601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 601 KNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccceEEcCCcEEEEEccCCCChhhhH
Confidence 568899999999999999999999997
No 467
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.58 E-value=0.07 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|+|.+||||||+.+.|+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 468
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.47 E-value=0.071 Score=48.41 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.40 E-value=0.074 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.2
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+..+..++|+|+||+|||||+..++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45566899999999999999776643
No 470
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.40 E-value=0.081 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 471
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.34 E-value=0.064 Score=51.01 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|.|+|+|||||||+.+.|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999975
No 472
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.31 E-value=0.075 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|+|+|++||||||+.+.|+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 473
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.19 E-value=0.079 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+..++|+|+||+|||||+++|++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 474
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.19 E-value=0.094 Score=47.83 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
..|.|+|.+||||||+.+.|+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 475
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.18 E-value=0.093 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.3
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+.|+|++|+|||||++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 476
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.10 E-value=0.084 Score=47.12 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|+|+|.+||||||+.+.|...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999753
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.05 E-value=0.074 Score=54.98 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=25.6
Q ss_pred eccCCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 231 ELKSIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 231 elk~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+..+..++|+|+||+|||||++.|++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678889999999999999999999985
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.80 E-value=0.09 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|.|.+||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 479
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.76 E-value=0.096 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.|.|+|+|||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 480
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.53 E-value=0.086 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHc
Q 014494 236 ADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+.+.|+|++|+|||||+++|++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999988
No 481
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.41 E-value=0.12 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+.|.|++|+|||||++++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999763
No 482
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.37 E-value=0.11 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|.|.+||||||+.+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999976
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.25 E-value=0.076 Score=52.18 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|++|+||||+.++|++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
No 484
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.22 E-value=0.11 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHHcC
Q 014494 234 SIADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 234 ~~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
....|.|.|+||+|||+|+++|.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3446899999999999999999874
No 485
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.19 E-value=0.14 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 014494 237 DVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Ls 256 (423)
..+|+|+|||||||||.+|+
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999986
No 486
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.14 E-value=0.12 Score=45.63 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 487
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.11 E-value=0.11 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHH
Q 014494 232 LKSIADVGLVGMPSAGKSTLLGAIS 256 (423)
Q Consensus 232 lk~~~~V~LVG~~naGKSTLLn~Ls 256 (423)
+..+..+.|+|++|+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 5567799999999999999999664
No 488
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.05 E-value=0.11 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|+|+|.+||||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.78 E-value=0.13 Score=48.51 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
.|.|+|+|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 490
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.74 E-value=0.12 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|+|++|+|||||++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999764
No 491
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=90.72 E-value=0.064 Score=55.33 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=23.8
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+.+++..+ ..+|+|.|||||||||.+|..
T Consensus 54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp EEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred EEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 45566655 789999999999999999954
No 492
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.47 E-value=0.14 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
+.+.|.|++|+||||++++|++.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 493
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.12 E-value=0.098 Score=55.05 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=26.6
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHcCC
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISRAK 259 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg~~ 259 (423)
+.+.+.....++|+|+||+|||||+++|++.-
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 44455666789999999999999999999863
No 494
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.09 E-value=0.17 Score=46.56 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHc
Q 014494 237 DVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg 257 (423)
++||+|+|||||||+.+.|+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.09 E-value=0.18 Score=47.09 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..+.|.|+||+|||||+++|+..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 496
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.07 E-value=0.18 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|.|+||+|||||+++|.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 497
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.04 E-value=0.17 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHcC
Q 014494 237 DVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 237 ~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
.+.|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 498
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.98 E-value=0.2 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHHcC
Q 014494 235 IADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 235 ~~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..-|.|.|+||+|||+|.++|...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 499
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.97 E-value=0.12 Score=51.39 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=26.1
Q ss_pred eeeeccCCCeEEEECCCCCcHHHHHHHHHc
Q 014494 228 LILELKSIADVGLVGMPSAGKSTLLGAISR 257 (423)
Q Consensus 228 l~lelk~~~~V~LVG~~naGKSTLLn~Lsg 257 (423)
+.+.+..+.+++|+|++|+|||||++.|.+
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 455677788999999999999999999876
No 500
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.72 E-value=1.7 Score=42.57 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHHcC
Q 014494 236 ADVGLVGMPSAGKSTLLGAISRA 258 (423)
Q Consensus 236 ~~V~LVG~~naGKSTLLn~Lsg~ 258 (423)
..|.|.|++|+|||+|.++|+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999764
Done!