Query 014495
Match_columns 423
No_of_seqs 328 out of 1796
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 2.1E-51 4.6E-56 407.4 19.9 273 28-322 1-279 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 3.3E-42 7.1E-47 338.7 15.7 210 84-310 46-259 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 1.7E-39 3.7E-44 296.5 11.5 172 99-285 2-173 (174)
4 KOG1314 DHHC-type Zn-finger pr 100.0 2E-37 4.3E-42 301.9 12.2 199 81-311 45-265 (414)
5 COG5273 Uncharacterized protei 100.0 1.4E-33 3E-38 280.4 15.1 165 95-285 67-232 (309)
6 KOG1313 DHHC-type Zn-finger pr 100.0 3.4E-33 7.4E-38 265.0 11.2 153 159-312 102-279 (309)
7 KOG1312 DHHC-type Zn-finger pr 100.0 2.4E-32 5.2E-37 260.3 10.9 170 91-285 105-290 (341)
8 KOG0509 Ankyrin repeat and DHH 100.0 2.3E-29 5E-34 262.0 8.3 240 37-307 326-583 (600)
9 KOG1311 DHHC-type Zn-finger pr 92.7 0.52 1.1E-05 46.9 8.5 41 173-213 113-164 (299)
10 COG5273 Uncharacterized protei 91.6 0.49 1.1E-05 47.7 6.9 117 158-285 122-244 (309)
11 PF01529 zf-DHHC: DHHC palmito 86.8 4.5 9.8E-05 36.4 9.0 55 156-221 59-113 (174)
12 KOG0509 Ankyrin repeat and DHH 85.5 0.4 8.7E-06 51.8 1.5 57 158-215 324-380 (600)
13 PRK04136 rpl40e 50S ribosomal 63.7 4 8.6E-05 29.7 1.2 24 158-181 13-36 (48)
14 PF13240 zinc_ribbon_2: zinc-r 56.2 6 0.00013 24.2 0.9 21 161-181 1-21 (23)
15 PRK15103 paraquat-inducible me 54.0 1.2E+02 0.0026 32.0 10.8 33 158-190 220-252 (419)
16 PHA02680 ORF090 IMV phosphoryl 52.9 51 0.0011 27.1 6.0 25 260-284 58-82 (91)
17 TIGR00155 pqiA_fam integral me 48.0 1.7E+02 0.0037 30.6 10.8 33 158-190 214-247 (403)
18 PTZ00303 phosphatidylinositol 47.0 9.7 0.00021 42.7 1.4 22 160-181 461-489 (1374)
19 PF13248 zf-ribbon_3: zinc-rib 46.5 10 0.00022 23.7 0.9 22 160-181 3-24 (26)
20 KOG1313 DHHC-type Zn-finger pr 46.4 1E+02 0.0022 30.7 8.1 133 159-309 116-279 (309)
21 PF00641 zf-RanBP: Zn-finger i 43.5 11 0.00024 24.2 0.8 21 161-181 6-26 (30)
22 KOG3183 Predicted Zn-finger pr 42.5 11 0.00024 36.5 0.8 12 183-194 38-49 (250)
23 TIGR00155 pqiA_fam integral me 40.3 2.1E+02 0.0046 30.0 10.0 32 159-190 13-50 (403)
24 KOG1398 Uncharacterized conser 40.1 28 0.0006 36.2 3.3 35 292-326 166-201 (460)
25 PF12773 DZR: Double zinc ribb 39.2 19 0.00042 25.7 1.5 34 159-192 12-48 (50)
26 PF01020 Ribosomal_L40e: Ribos 37.8 21 0.00046 26.4 1.5 25 158-182 16-42 (52)
27 KOG1314 DHHC-type Zn-finger pr 36.5 3.4E+02 0.0073 28.2 10.2 42 159-211 105-146 (414)
28 COG1552 RPL40A Ribosomal prote 36.1 8.1 0.00018 28.2 -0.8 24 158-181 13-36 (50)
29 KOG1315 Predicted DHHC-type Zn 35.6 2.6E+02 0.0057 28.3 9.4 52 172-223 108-170 (307)
30 KOG2568 Predicted membrane pro 34.9 4.4E+02 0.0094 28.7 11.3 40 277-318 409-448 (518)
31 PF10864 DUF2663: Protein of u 34.0 1.8E+02 0.004 25.7 7.0 17 203-219 22-38 (130)
32 PF06906 DUF1272: Protein of u 30.8 27 0.0006 26.3 1.2 35 162-199 8-50 (57)
33 PF10571 UPF0547: Uncharacteri 30.6 27 0.00059 22.1 1.0 22 160-181 1-22 (26)
34 PF08600 Rsm1: Rsm1-like; Int 29.9 27 0.00058 28.7 1.1 12 187-198 55-66 (91)
35 PF14127 DUF4294: Domain of un 28.8 44 0.00096 30.5 2.4 36 274-313 103-138 (157)
36 KOG1842 FYVE finger-containing 27.6 16 0.00035 38.5 -0.7 27 158-184 179-207 (505)
37 PF01528 Herpes_glycop: Herpes 26.7 4.4E+02 0.0095 27.5 9.5 36 264-299 164-200 (374)
38 PF07649 C1_3: C1-like domain; 26.4 26 0.00057 22.5 0.4 22 160-181 1-23 (30)
39 PF03348 Serinc: Serine incorp 26.3 5.5E+02 0.012 27.2 10.4 12 264-275 251-262 (429)
40 PF01363 FYVE: FYVE zinc finge 23.8 26 0.00056 26.7 -0.0 26 159-184 9-36 (69)
41 PF15086 UPF0542: Uncharacteri 21.4 1E+02 0.0022 24.5 2.8 28 47-74 17-44 (74)
42 PF04156 IncA: IncA protein; 21.1 2E+02 0.0044 26.2 5.4 10 87-96 46-55 (191)
43 PF07010 Endomucin: Endomucin; 20.7 1.8E+02 0.0038 28.3 4.8 15 99-113 209-223 (259)
44 PF11014 DUF2852: Protein of u 20.4 1.6E+02 0.0034 25.6 4.0 21 245-265 8-28 (115)
45 PHA02898 virion envelope prote 20.4 2.7E+02 0.0058 23.1 5.1 26 259-284 56-82 (92)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=2.1e-51 Score=407.35 Aligned_cols=273 Identities=34% Similarity=0.621 Sum_probs=217.8
Q ss_pred eeeecCCceEecCceEEEcCCcchHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcCC
Q 014495 28 YEVWKGTNRFCCGGRLIFGPDVRSIFLTLFLIVTPVILFCVFVSQTLIDEFRQNRGNLIVAICVVFTLYVIFLLLLTSGR 107 (423)
Q Consensus 28 y~~~~g~n~f~c~GRli~Gpd~~~l~~t~~LI~~p~ilf~~fv~~~l~~~~~~~~g~~i~~i~~vl~~~~l~~l~~t~~~ 107 (423)
++.+.|++.+-++|+...+|.....+.++++++++.. |+++..+.+.. ......+.++..++.++.++.++.++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~---~~~~~~~~~~~~if~~~~~~~~~~~~~~ 76 (299)
T KOG1311|consen 1 FADFLGNRIPRRGGRILDPPVALPVLVTYVLLVGSET-FFVFLPPLLPR---GGVSPAVLVLGAIFFLLNILNLMLACFR 76 (299)
T ss_pred CCcCccccccCCCceeeccccchhHHHHHHHHhhheE-EEEEEeeecCC---cccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999888887765 55555554432 1223445556666667777777776666
Q ss_pred ---CCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeeceeeccccccccCCCCccCccCCcccc
Q 014495 108 ---DPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVKYCHTCMLYRPPRCSHCSICNNCVE 184 (423)
Q Consensus 108 ---DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HC~~C~~CV~ 184 (423)
|||++|++... ..+ . . .+.++.+++.+||..++.|||.+|+.+||||||||++||+||+
T Consensus 77 ~~sdpg~~p~~~~~----~~~------~-------~-~~~~~~~~~~~~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~ 138 (299)
T KOG1311|consen 77 MLSDPGIVPRADDE----QIE------D-------P-ERAPLYKNVDVNGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVL 138 (299)
T ss_pred ccCCCceecCcccC----CCC------C-------c-cccccCCCcccCCcccceEEcCcCcccCCCCcccchhhccccc
Confidence 99999997411 011 0 0 1456778889999999999999999999999999999999999
Q ss_pred cccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh--hhhhcCchhHHHHHHHHHHHHHH
Q 014495 185 RFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYHCDLW--KAFMKSPVSGILILYTFVTVWFV 262 (423)
Q Consensus 185 rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~i~l~i~~~~~~~~v 262 (423)
||||||||+|||||+||||+|++|++++++++++.++++++.+...........+ ........+++++++++++++++
T Consensus 139 rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 218 (299)
T KOG1311|consen 139 RFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFT 218 (299)
T ss_pred ccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887554443333333 22333445566777888899999
Q ss_pred HHHHHHHHHHHHcCcchhhhhhh-ccCCCCCCCCHhHHHHHHHhcCCCCCCCccccccccc
Q 014495 263 GGLTAFHLYLILTNQTTYENFRY-RYHRKMNPYNRGCGRNFVEIFFSKIPSSRNNFRAKVK 322 (423)
Q Consensus 263 ~~L~~~hl~lI~~N~TT~E~~r~-~~~~~~npy~~G~~~N~~evf~~~~pps~~~~r~~~~ 322 (423)
++|+.||+++|++|+||+|+++. +.+.+.+||++|.++|++++||.+.+++..+.++...
T Consensus 219 ~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~p~~~~~ 279 (299)
T KOG1311|consen 219 SALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLSWLSPFARSG 279 (299)
T ss_pred HHHHHhheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCcccccccccCC
Confidence 99999999999999999999884 4444459999999999999999999999887777653
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=3.3e-42 Score=338.72 Aligned_cols=210 Identities=31% Similarity=0.567 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeeceeecc
Q 014495 84 NLIVAICVVFTLYVIFLLLLTSGRDPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVKYCH 163 (423)
Q Consensus 84 ~~i~~i~~vl~~~~l~~l~~t~~~DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~kyC~ 163 (423)
...+++...+.++.++++++++++|||.+|..+.++.++.. .. + .....++.+.....+...+.|||.
T Consensus 46 ~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~-~~---~--------~~~~~~~~~~~~~~~~~g~~R~C~ 113 (307)
T KOG1315|consen 46 VLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDED-SL---E--------NGSDNERDLPGYTRTSDGAVRYCD 113 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccc-cc---c--------ccCcccccceeeEecCCCCceeec
Confidence 34455556667777889999999999999999876433221 10 0 001111222333344556899999
Q ss_pred ccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhh
Q 014495 164 TCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYHCDLWKAFM 243 (423)
Q Consensus 164 tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (423)
+|+.+||||||||++|++||+||||||||+|||||.+|||+|++|++|++++++++++.....+........ .. ...
T Consensus 114 kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~-~~-~~~- 190 (307)
T KOG1315|consen 114 KCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGA-GP-SSL- 190 (307)
T ss_pred ccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-chh-
Confidence 999999999999999999999999999999999999999999999999999999988877766654441110 00 000
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhc----cCCCCCCCCHhHHHHHHHhcCCCC
Q 014495 244 KSPVSGILILYTFVTVWFVGGLTAFHLYLILTNQTTYENFRYR----YHRKMNPYNRGCGRNFVEIFFSKI 310 (423)
Q Consensus 244 ~~~~~i~l~i~~~~~~~~v~~L~~~hl~lI~~N~TT~E~~r~~----~~~~~npy~~G~~~N~~evf~~~~ 310 (423)
.....+++++..+.+++.+++|++||++||++|+||+|.++.. .....|.|+. ..|+.++|++.+
T Consensus 191 ~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~~~~~~~~~~~--~~n~~~vfg~~~ 259 (307)
T KOG1315|consen 191 LLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVFRSGLHNKNGFNL--YVNFREVFGSNL 259 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccccccccccCCcce--eecHHHHhCCCc
Confidence 0112233444455555667779999999999999999998754 2234566666 789999999763
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=1.7e-39 Score=296.46 Aligned_cols=172 Identities=36% Similarity=0.718 Sum_probs=125.0
Q ss_pred HHHHHhcCCCCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeeceeeccccccccCCCCccCcc
Q 014495 99 FLLLLTSGRDPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVKYCHTCMLYRPPRCSHCSI 178 (423)
Q Consensus 99 ~~l~~t~~~DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~HC~~ 178 (423)
++|+++.++|||++|+.... +.+..+.. ........+...++.....++|.+|+++||+|||||+.
T Consensus 2 ~~~~~~~~~dPG~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~ 67 (174)
T PF01529_consen 2 WSYFLTIFIDPGYVPRSNPD-EDQRQEEK-------------EEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRV 67 (174)
T ss_pred EEehhhheECCcccCCcccc-cccccccc-------------ccccchhhhhhccccCCCCEECcccCCcCCCcceeccc
Confidence 46788999999999998211 11110000 00001112222334556789999999999999999999
Q ss_pred CCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhcCchhHHHHHHHHHH
Q 014495 179 CNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYHCDLWKAFMKSPVSGILILYTFVT 258 (423)
Q Consensus 179 C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~l~i~~~~~ 258 (423)
||+||.||||||||+|||||++|||+|++|+++.++++++.++.++..+...........+... .....+++++++++.
T Consensus 68 C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 146 (174)
T PF01529_consen 68 CNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIF-SNFSSIFLLIISIFF 146 (174)
T ss_pred cccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-hhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777766544332221111110 011125666777788
Q ss_pred HHHHHHHHHHHHHHHHcCcchhhhhhh
Q 014495 259 VWFVGGLTAFHLYLILTNQTTYENFRY 285 (423)
Q Consensus 259 ~~~v~~L~~~hl~lI~~N~TT~E~~r~ 285 (423)
+++++.|+++|+++|++|+||+|.+++
T Consensus 147 ~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 147 FIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 888999999999999999999999875
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=2e-37 Score=301.85 Aligned_cols=199 Identities=26% Similarity=0.472 Sum_probs=137.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeecee
Q 014495 81 NRGNLIVAICVVFTLYVIFLLLLTSGRDPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVK 160 (423)
Q Consensus 81 ~~g~~i~~i~~vl~~~~l~~l~~t~~~DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~k 160 (423)
..|..-.+...+.+.+.++.|+.++++.||++|++++|..+.+ ....+
T Consensus 45 ~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D--------------------------------~~~lq 92 (414)
T KOG1314|consen 45 FLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKD--------------------------------EMFLQ 92 (414)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChh--------------------------------HHHHH
Confidence 3455555555666778889999999999999999998743221 02468
Q ss_pred eccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHh-hhc
Q 014495 161 YCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFS---FC-WVNIIKIMQ-KYH 235 (423)
Q Consensus 161 yC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~---~~-~~~i~~~~~-~~~ 235 (423)
||..|+-||+||||||+.|||||.+|||||||+|||||..||.+|+.||++..+.|+-..+ .. +..|...+. +..
T Consensus 93 fCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g 172 (414)
T KOG1314|consen 93 FCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYG 172 (414)
T ss_pred HHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999887763321 11 111211110 000
Q ss_pred hhhhhhhhcCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHcCcchhhhhh-------h-ccCC-----CCCCCCHhH
Q 014495 236 CDLWKAFMKSPVSGILIL----YTFVTVWFVGGLTAFHLYLILTNQTTYENFR-------Y-RYHR-----KMNPYNRGC 298 (423)
Q Consensus 236 ~~~~~~~~~~~~~i~l~i----~~~~~~~~v~~L~~~hl~lI~~N~TT~E~~r-------~-~~~~-----~~npy~~G~ 298 (423)
..-.....-++.+++.++ +++..++.++.|++.|+..|.+|+|.+|.+- . .+.. -.-|||.|.
T Consensus 173 ~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgW 252 (414)
T KOG1314|consen 173 LRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGW 252 (414)
T ss_pred cccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccc
Confidence 000000011122222222 2233345567788999999999999999873 1 1111 146999996
Q ss_pred HHHHHHhcCCCCC
Q 014495 299 GRNFVEIFFSKIP 311 (423)
Q Consensus 299 ~~N~~evf~~~~p 311 (423)
..|+++||+..-.
T Consensus 253 r~n~r~vf~~~~~ 265 (414)
T KOG1314|consen 253 RINLREVFFQNKK 265 (414)
T ss_pred cccHHHHhhhccc
Confidence 6799999976533
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=280.40 Aligned_cols=165 Identities=36% Similarity=0.633 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCCCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeeceeeccccccccCCCCc
Q 014495 95 LYVIFLLLLTSGRDPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVKYCHTCMLYRPPRCS 174 (423)
Q Consensus 95 ~~~l~~l~~t~~~DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~kyC~tC~i~RPpRs~ 174 (423)
....+.++...+.|||..+++......++.. +.....|.....+||.+|+.+||+|||
T Consensus 67 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~C~~C~~~KP~RS~ 124 (309)
T COG5273 67 VLASFSYLLLLVSDPGYLGENITLSGYRETI----------------------SRLLDDGKFGTENFCSTCNIYKPPRSH 124 (309)
T ss_pred hhHHHhhHHHhhcCCCccCccccccchhhhh----------------------hhhhhcCccccceeccccccccCCCCc
Confidence 3456778888999999999875432221110 011122344578999999999999999
Q ss_pred cCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhhhhhhcCchhHHHHH
Q 014495 175 HCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYH-CDLWKAFMKSPVSGILIL 253 (423)
Q Consensus 175 HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~i~l~i 253 (423)
||+.||+||+||||||||+|||||++|||+|++|++++.+..++++..+++++....+..+ ...+... .......
T Consensus 125 HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----li~~~~~ 200 (309)
T COG5273 125 HCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICF----LIFGCSL 200 (309)
T ss_pred cchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHH----HHHhhhH
Confidence 9999999999999999999999999999999999999999888888888777655443222 1111000 0011123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhhhhh
Q 014495 254 YTFVTVWFVGGLTAFHLYLILTNQTTYENFRY 285 (423)
Q Consensus 254 ~~~~~~~~v~~L~~~hl~lI~~N~TT~E~~r~ 285 (423)
+....++++..++.+|.+++..|+||+|.+..
T Consensus 201 ~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~ 232 (309)
T COG5273 201 LGVVFFIITTLLLLFLIYLILNNLTTIEFIQI 232 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33444566778999999999999999998754
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=264.97 Aligned_cols=153 Identities=32% Similarity=0.600 Sum_probs=116.2
Q ss_pred eeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--
Q 014495 159 VKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYHC-- 236 (423)
Q Consensus 159 ~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~~-- 236 (423)
..+|.+|.-+||||+|||++||+||++|||||||+|||||..||||||+|++++++.+.|..+++.+...........
T Consensus 102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t 181 (309)
T KOG1313|consen 102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT 181 (309)
T ss_pred ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 469999999999999999999999999999999999999999999999999999999999887765544333211100
Q ss_pred ----h------------hhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhcc-------CCCCCC
Q 014495 237 ----D------------LWKAFMKSPVSGILILYTFVTVWFVGGLTAFHLYLILTNQTTYENFRYRY-------HRKMNP 293 (423)
Q Consensus 237 ----~------------~~~~~~~~~~~i~l~i~~~~~~~~v~~L~~~hl~lI~~N~TT~E~~r~~~-------~~~~np 293 (423)
+ ..+.+..+- ...+.++++..++.++.|..+|.++|+.|.|.+|+..+.+ +.+.||
T Consensus 182 ay~~d~~h~~Pp~~i~r~~~~i~~t~-~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R~~~ 260 (309)
T KOG1313|consen 182 AYASDVAHVAPPPSILRVYKNITRTS-IANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLRSNP 260 (309)
T ss_pred cccCcccccCCChhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhccCCC
Confidence 0 000111110 1124455566667788999999999999999999874322 345799
Q ss_pred CCHhHHHHHHHhcCCCCCC
Q 014495 294 YNRGCGRNFVEIFFSKIPS 312 (423)
Q Consensus 294 y~~G~~~N~~evf~~~~pp 312 (423)
||.|...||+.+++-.--|
T Consensus 261 ~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 261 TNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred cccchHHHHHHhhccccCC
Confidence 9999999999988755433
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.97 E-value=2.4e-32 Score=260.34 Aligned_cols=170 Identities=34% Similarity=0.609 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeeceeeccccccccC
Q 014495 91 VVFTLYVIFLLLLTSGRDPGIIPRNLHPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKVKYCHTCMLYRP 170 (423)
Q Consensus 91 ~vl~~~~l~~l~~t~~~DPGiiPr~~~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~kyC~tC~i~RP 170 (423)
..+.++..+++.+|+.+|||++.+..-.. ...+.| ..+++. .+.+.|+||++.||
T Consensus 105 ~l~vivp~i~f~ltc~snpg~i~k~n~s~--------------------~~~~yp-YDy~if----~k~~kCSTCki~KP 159 (341)
T KOG1312|consen 105 YLLVIVPLIFFTLTCGSNPGIITKANESL--------------------FLHVYP-YDYVIF----PKNVKCSTCKIRKP 159 (341)
T ss_pred HHHHHHHHHHHhhhhcCCCCccchhhhcc--------------------ceeccC-ccceee----cCCCccccccCCCc
Confidence 33445567889999999999997642110 111222 122221 13478999999999
Q ss_pred CCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhh-hhhhhc
Q 014495 171 PRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYH-----CDL-WKAFMK 244 (423)
Q Consensus 171 pRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~-----~~~-~~~~~~ 244 (423)
.||+|||+||+||+||||||.|+|||||++|+|||++||++...++.|.++-.+......+.+.. .+. |.....
T Consensus 160 ARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~sdl~q~v~ilt~~~g~~ks 239 (341)
T KOG1312|consen 160 ARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMSDLYQEVYILTLGHGHVKS 239 (341)
T ss_pred cccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhccccchheeeeeeeecchhh
Confidence 99999999999999999999999999999999999999999988888877655543112221111 011 111111
Q ss_pred CchhHHHHHH---------HHH-HHHHHHHHHHHHHHHHHcCcchhhhhhh
Q 014495 245 SPVSGILILY---------TFV-TVWFVGGLTAFHLYLILTNQTTYENFRY 285 (423)
Q Consensus 245 ~~~~i~l~i~---------~~~-~~~~v~~L~~~hl~lI~~N~TT~E~~r~ 285 (423)
....+-.++. ++. ...++++...|-+|+-++|+||.|+.+.
T Consensus 240 ~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~ 290 (341)
T KOG1312|consen 240 TVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRG 290 (341)
T ss_pred HHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhcc
Confidence 1111111111 111 1235677888889999999999998864
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=262.03 Aligned_cols=240 Identities=27% Similarity=0.531 Sum_probs=142.4
Q ss_pred EecCceEEEcCCcchHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCC
Q 014495 37 FCCGGRLIFGPDVRSIFLTLFLIVTPVILFCVFVSQTLIDEFRQNRGNLIVAICVVFTLYVIFLLLLTSGRDPGIIPRNL 116 (423)
Q Consensus 37 f~c~GRli~Gpd~~~l~~t~~LI~~p~ilf~~fv~~~l~~~~~~~~g~~i~~i~~vl~~~~l~~l~~t~~~DPGiiPr~~ 116 (423)
+.|..|-++++-....+++.++...-.++++.+.. .+.+. .........++..+..++.+.++..+|||++|...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~----~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~ 400 (600)
T KOG0509|consen 326 CLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPY----TLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTST 400 (600)
T ss_pred eeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccch----hhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCch
Confidence 34567778888777777666665555555544443 22111 00011111122222334455566669999999763
Q ss_pred CCCCcccCCCCccccccCCCCCCCCCCCCCCcceeecCeeece-eeccccccccCCCCccCccCCcccccccccCcCccc
Q 014495 117 HPPELEDDGSTISTDWLGSQNGGGGPTLPPTRDVVVNGMVVKV-KYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQ 195 (423)
Q Consensus 117 ~~~e~e~~~~~~s~~~~~~q~~~~~~~~p~~k~v~vng~~~~~-kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgn 195 (423)
... .+ .+ ++..--|..... +||.+|.+.||.||+||++||+||.||||||||++|
T Consensus 401 ~~~----~~-tI-------------------s~l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~n 456 (600)
T KOG0509|consen 401 EVG----RE-TI-------------------SQLIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGN 456 (600)
T ss_pred hhH----HH-HH-------------------HHhhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCcccc
Confidence 110 00 00 000011222233 699999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhc------C--chhHHHHHHHHH-HHHHHHHHH
Q 014495 196 CIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIMQKYHCDLWKAFMK------S--PVSGILILYTFV-TVWFVGGLT 266 (423)
Q Consensus 196 CIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~~~~~~~~~~~~~~------~--~~~i~l~i~~~~-~~~~v~~L~ 266 (423)
|||.+|+|+|+.|++++...+.+++..+.+++....... ..|..... . +....++...-+ ..+-.+...
T Consensus 457 cVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~ 534 (600)
T KOG0509|consen 457 CVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENAS--TIYVGFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTK 534 (600)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHHHHhCCccceeeeeecccccccccccccc
Confidence 999999999999999999999888888777753221110 11211100 0 000000000000 001111222
Q ss_pred HHHHHHHHcCcchhhhhhhc-c-------CCCCCCCCHhHHHHHHHhcC
Q 014495 267 AFHLYLILTNQTTYENFRYR-Y-------HRKMNPYNRGCGRNFVEIFF 307 (423)
Q Consensus 267 ~~hl~lI~~N~TT~E~~r~~-~-------~~~~npy~~G~~~N~~evf~ 307 (423)
+-|...++.+.||+|.++.+ + ....+|++.|..+|+.+++-
T Consensus 535 ~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~df~~ 583 (600)
T KOG0509|consen 535 CQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLVDFFL 583 (600)
T ss_pred ccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcchheee
Confidence 33445688999999988532 1 12368999999999999884
No 9
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=92.67 E-value=0.52 Score=46.95 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=35.7
Q ss_pred CccCccCCcccccccccCcCcccccccccH-----------HHHHHHHHHHH
Q 014495 173 CSHCSICNNCVERFDHHCPWVGQCIGKRNY-----------RFFFMFVSSTT 213 (423)
Q Consensus 173 s~HC~~C~~CV~rfDHHCpWvgnCIG~rNy-----------r~F~lFl~~~~ 213 (423)
-++|..|+..+...-|||+.-|+||-+.-| |-+-.|+.++.
T Consensus 113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 799999999999999999999999999854 56668885555
No 10
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=91.60 E-value=0.49 Score=47.73 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=67.7
Q ss_pred ceeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhh
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNII---KIMQKY 234 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~---~~~~~~ 234 (423)
+.+.|++|+.=-...-|||.-=||||-+--| |=+-.|++++.+.++..++....-+..+. ......
T Consensus 122 RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (309)
T COG5273 122 RSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA 190 (309)
T ss_pred CCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5789999998888999999999999987543 55678888886554443332221111110 000000
Q ss_pred -chhhhh--hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhh
Q 014495 235 -HCDLWK--AFMKSPVSGILILYTFVTVWFVGGLTAFHLYLILTNQTTYENFRY 285 (423)
Q Consensus 235 -~~~~~~--~~~~~~~~i~l~i~~~~~~~~v~~L~~~hl~lI~~N~TT~E~~r~ 285 (423)
..-++. .+....+.+.++++.+.....+..++.+..+.+.++.++-|....
T Consensus 191 ~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~ 244 (309)
T COG5273 191 ICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPL 244 (309)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccch
Confidence 000111 111111222333333444455667888889999999999887643
No 11
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=86.79 E-value=4.5 Score=36.38 Aligned_cols=55 Identities=20% Similarity=0.417 Sum_probs=37.2
Q ss_pred eeceeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014495 156 VVKVKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFS 221 (423)
Q Consensus 156 ~~~~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~ 221 (423)
..+.++|..|+.-...+-|||.--|+||-+--| +-+=.|+++.....+..++...
T Consensus 59 p~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~ 113 (174)
T PF01529_consen 59 PPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSL 113 (174)
T ss_pred CCcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888888888876543 4455677666555555444433
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=85.51 E-value=0.4 Score=51.82 Aligned_cols=57 Identities=12% Similarity=-0.097 Sum_probs=48.1
Q ss_pred ceeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHH
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLL 215 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll 215 (423)
-...|.+|.+..+.+-.+|..|-.|+..|++||+|+. ||+.+|-..|.+..+...+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~ 380 (600)
T KOG0509|consen 324 LTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLA 380 (600)
T ss_pred hheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHH
Confidence 4568999999999999999999999999999999999 99999987766544433333
No 13
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=63.72 E-value=4 Score=29.72 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=21.8
Q ss_pred ceeeccccccccCCCCccCccCCc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
..+.|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 467999999999999999999876
No 14
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=56.24 E-value=6 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.649 Sum_probs=16.7
Q ss_pred eccccccccCCCCccCccCCc
Q 014495 161 YCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 161 yC~tC~i~RPpRs~HC~~C~~ 181 (423)
||..|...-++-+..|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 688888888888888888864
No 15
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=54.00 E-value=1.2e+02 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=23.7
Q ss_pred ceeeccccccccCCCCccCccCCcccccccccC
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNNCVERFDHHC 190 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHC 190 (423)
...-|+.|...-|....||..|+.-..+..++.
T Consensus 220 ~l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~s 252 (419)
T PRK15103 220 GLRSCSCCTAILPADQPVCPRCHTKGYVRRRNS 252 (419)
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCCC
Confidence 356799999887777778888887765554443
No 16
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=52.91 E-value=51 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHcCcchhhhhh
Q 014495 260 WFVGGLTAFHLYLILTNQTTYENFR 284 (423)
Q Consensus 260 ~~v~~L~~~hl~lI~~N~TT~E~~r 284 (423)
+.+.++++|..|-=|++.+++|.++
T Consensus 58 vl~lGilifs~y~~C~~~~~~~r~n 82 (91)
T PHA02680 58 VLLLGLFVFSMYRKCSGSMPYERLN 82 (91)
T ss_pred HHHHHHHHHHHhcccCCCceeeccc
Confidence 3455688888888788877777654
No 17
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.00 E-value=1.7e+02 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=21.3
Q ss_pred ceeecccccc-ccCCCCccCccCCcccccccccC
Q 014495 158 KVKYCHTCML-YRPPRCSHCSICNNCVERFDHHC 190 (423)
Q Consensus 158 ~~kyC~tC~i-~RPpRs~HC~~C~~CV~rfDHHC 190 (423)
...-|..|.. ..|....||..|+.-..+..++.
T Consensus 214 ~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~s 247 (403)
T TIGR00155 214 KLRSCSACHTTILPAQEPVCPRCSTPLYVRRRNS 247 (403)
T ss_pred CCCcCCCCCCccCCCCCcCCcCCCCcccCCCCCC
Confidence 3456999997 44555667887777665554443
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=47.01 E-value=9.7 Score=42.71 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.0
Q ss_pred eeccccccccC-------CCCccCccCCc
Q 014495 160 KYCHTCMLYRP-------PRCSHCSICNN 181 (423)
Q Consensus 160 kyC~tC~i~RP-------pRs~HC~~C~~ 181 (423)
+.|..|+..-. -|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 67999987664 38999999977
No 19
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=46.47 E-value=10 Score=23.74 Aligned_cols=22 Identities=23% Similarity=0.668 Sum_probs=17.6
Q ss_pred eeccccccccCCCCccCccCCc
Q 014495 160 KYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 160 kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
++|..|...-++-++.|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5788888877888888888874
No 20
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=46.38 E-value=1e+02 Score=30.72 Aligned_cols=133 Identities=18% Similarity=0.328 Sum_probs=77.1
Q ss_pred eeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 014495 159 VKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTLLCIYVFSFCWVNIIKIM------- 231 (423)
Q Consensus 159 ~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~~~ll~i~~~~~~~~~i~~~~------- 231 (423)
..-|++|..=--.=-|||.-=|+||--..| |=.-.|+.++...+.++.+.....|.......
T Consensus 116 THHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~tay~ 184 (309)
T KOG1313|consen 116 THHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITAYA 184 (309)
T ss_pred cchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccccc
Confidence 346777764444457999999999998766 45678999998888888777665555332111
Q ss_pred --------------------hhhchhhhhhhhcCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHcCcchhhhhhhcc
Q 014495 232 --------------------QKYHCDLWKAFMKSPVSGILILYTFVTV----WFVGGLTAFHLYLILTNQTTYENFRYRY 287 (423)
Q Consensus 232 --------------------~~~~~~~~~~~~~~~~~i~l~i~~~~~~----~~v~~L~~~hl~lI~~N~TT~E~~r~~~ 287 (423)
+++-...|-.. . .+++++..+... +.++...+-++.++...+++.-..|
T Consensus 185 ~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls---~-~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~R--- 257 (309)
T KOG1313|consen 185 SDVAHVAPPPSILRVYKNITRTSIANLWFLS---V-RVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHLR--- 257 (309)
T ss_pred CcccccCCChhhhhhhhhhhHHHHHHHHHHH---H-HHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhcc---
Confidence 11111222111 1 111222222211 2244555666666777777665555
Q ss_pred CCCCCCCCHhHHHHHHHhcCCC
Q 014495 288 HRKMNPYNRGCGRNFVEIFFSK 309 (423)
Q Consensus 288 ~~~~npy~~G~~~N~~evf~~~ 309 (423)
....|-=-+--|+|+..++..+
T Consensus 258 ~~~~n~g~k~nWr~fLg~~~~r 279 (309)
T KOG1313|consen 258 SNPTNFGGKANWRNFLGLFRGR 279 (309)
T ss_pred CCCcccchHHHHHHhhccccCC
Confidence 2334444555699999999887
No 21
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=43.54 E-value=11 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.831 Sum_probs=15.9
Q ss_pred eccccccccCCCCccCccCCc
Q 014495 161 YCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 161 yC~tC~i~RPpRs~HC~~C~~ 181 (423)
.|..|...-+++..+|..|+.
T Consensus 6 ~C~~C~~~N~~~~~~C~~C~~ 26 (30)
T PF00641_consen 6 KCPSCTFMNPASRSKCVACGA 26 (30)
T ss_dssp EETTTTEEEESSSSB-TTT--
T ss_pred cCCCCcCCchHHhhhhhCcCC
Confidence 588999999999999988864
No 22
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=42.53 E-value=11 Score=36.53 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=9.4
Q ss_pred cccccccCcCcc
Q 014495 183 VERFDHHCPWVG 194 (423)
Q Consensus 183 V~rfDHHCpWvg 194 (423)
..+.+|||||+.
T Consensus 38 rsye~H~Cp~~~ 49 (250)
T KOG3183|consen 38 RSYESHHCPKGL 49 (250)
T ss_pred chHhhcCCCccc
Confidence 456799999975
No 23
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=40.30 E-value=2.1e+02 Score=29.99 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=19.5
Q ss_pred eeeccccccc--cCC----CCccCccCCcccccccccC
Q 014495 159 VKYCHTCMLY--RPP----RCSHCSICNNCVERFDHHC 190 (423)
Q Consensus 159 ~kyC~tC~i~--RPp----Rs~HC~~C~~CV~rfDHHC 190 (423)
..-|..|... +|+ ..-+|..|+.-..+.+++.
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~ 50 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDWS 50 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCCC
Confidence 3469999732 232 2346888887776655554
No 24
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.13 E-value=28 Score=36.22 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=23.5
Q ss_pred CCCCHhHHHH-HHHhcCCCCCCCccccccccccCCC
Q 014495 292 NPYNRGCGRN-FVEIFFSKIPSSRNNFRAKVKVDSS 326 (423)
Q Consensus 292 npy~~G~~~N-~~evf~~~~pps~~~~r~~~~~~~~ 326 (423)
-+|..++..= +....+...|.|.+.|+.+...+..
T Consensus 166 llfg~~~aal~yi~~~g~tlpksFn~f~~~agke~~ 201 (460)
T KOG1398|consen 166 LLFGLACAALMYIFIMGPTLPKSFNEFIQKAGKEAR 201 (460)
T ss_pred hhhhHHHHHHHHHHhcCCCCCccchHHHHHhccccc
Confidence 3666665543 3444566678888999988887764
No 25
>PF12773 DZR: Double zinc ribbon
Probab=39.15 E-value=19 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=23.2
Q ss_pred eeeccccccccC--C-CCccCccCCcccccccccCcC
Q 014495 159 VKYCHTCMLYRP--P-RCSHCSICNNCVERFDHHCPW 192 (423)
Q Consensus 159 ~kyC~tC~i~RP--p-Rs~HC~~C~~CV~rfDHHCpW 192 (423)
.+||..|...-+ + ....|..|+.=+...+.+|+.
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 567777776655 2 356677777777777777764
No 26
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=37.78 E-value=21 Score=26.43 Aligned_cols=25 Identities=28% Similarity=0.806 Sum_probs=17.0
Q ss_pred ceeeccccccccCCCCccCcc--CCcc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSI--CNNC 182 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~--C~~C 182 (423)
..+.|..|-..-|||+..|+. |+.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 357899999999999999998 8765
No 27
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=36.55 E-value=3.4e+02 Score=28.20 Aligned_cols=42 Identities=26% Similarity=0.475 Sum_probs=29.7
Q ss_pred eeeccccccccCCCCccCccCCcccccccccCcCcccccccccHHHHHHHHHH
Q 014495 159 VKYCHTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSS 211 (423)
Q Consensus 159 ~kyC~tC~i~RPpRs~HC~~C~~CV~rfDHHCpWvgnCIG~rNyr~F~lFl~~ 211 (423)
..-|.+|..=.-.=-|||.--|+||---.| --+-+|++|.+.
T Consensus 105 SHHCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~~FLlf~iv 146 (414)
T KOG1314|consen 105 SHHCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFLRFLLFSIV 146 (414)
T ss_pred cccchHHHHHHHhhccCCcchhhccccccc-----------HHHHHHHHHHHH
Confidence 356777764444457999999999864433 235788888876
No 28
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=36.13 E-value=8.1 Score=28.24 Aligned_cols=24 Identities=33% Similarity=0.892 Sum_probs=21.4
Q ss_pred ceeeccccccccCCCCccCccCCc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
..+.|..|...-|+|+.-|+.|+.
T Consensus 13 ~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 13 NKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred hHHHHHHhcCCCCcchhHHhhccC
Confidence 457999999999999999998864
No 29
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=35.61 E-value=2.6e+02 Score=28.30 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=38.5
Q ss_pred CCccCccCCcccccccccCcCcccccccccH-----------HHHHHHHHHHHHHHHHHHHHH
Q 014495 172 RCSHCSICNNCVERFDHHCPWVGQCIGKRNY-----------RFFFMFVSSTTLLCIYVFSFC 223 (423)
Q Consensus 172 Rs~HC~~C~~CV~rfDHHCpWvgnCIG~rNy-----------r~F~lFl~~~~ll~i~~~~~~ 223 (423)
+.+.|..|+.-....-|||.--+.||.+.-| +-+=.|++.+....++.+...
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~l 170 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVL 170 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999744 445566665555554444333
No 30
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=34.94 E-value=4.4e+02 Score=28.73 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=25.9
Q ss_pred cchhhhhhhccCCCCCCCCHhHHHHHHHhcCCCCCCCccccc
Q 014495 277 QTTYENFRYRYHRKMNPYNRGCGRNFVEIFFSKIPSSRNNFR 318 (423)
Q Consensus 277 ~TT~E~~r~~~~~~~npy~~G~~~N~~evf~~~~pps~~~~r 318 (423)
.+..+.||.++- .+-+-..+.-=+.-+.+.=|.||.|+.|
T Consensus 409 ~~~~~~Wk~~Wv--~~a~W~~l~~~iLvvI~~LWrPS~nn~r 448 (518)
T KOG2568|consen 409 MSCNKDWKERWV--DTAFWPLLFFLILVVIMFLWRPSQNNQR 448 (518)
T ss_pred HHHHHHHHHhhh--hhccHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 377778886542 2223335555556667888999998888
No 31
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=33.95 E-value=1.8e+02 Score=25.70 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014495 203 RFFFMFVSSTTLLCIYV 219 (423)
Q Consensus 203 r~F~lFl~~~~ll~i~~ 219 (423)
++.++++++++++++|+
T Consensus 22 ~~~~~~l~~~~~~~~y~ 38 (130)
T PF10864_consen 22 FWQWLFLFSLFLFFIYF 38 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 32
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.79 E-value=27 Score=26.31 Aligned_cols=35 Identities=34% Similarity=0.978 Sum_probs=25.2
Q ss_pred ccccccccCCC-------CccCccCCcccccc-cccCcCccccccc
Q 014495 162 CHTCMLYRPPR-------CSHCSICNNCVERF-DHHCPWVGQCIGK 199 (423)
Q Consensus 162 C~tC~i~RPpR-------s~HC~~C~~CV~rf-DHHCpWvgnCIG~ 199 (423)
|..|..--||- |+-|--|..|++.. +++|| ||=|.
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 55555554544 35688899999998 99999 77664
No 33
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.59 E-value=27 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.626 Sum_probs=16.9
Q ss_pred eeccccccccCCCCccCccCCc
Q 014495 160 KYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 160 kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
|.|..|...-|.-+.-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 4688888888888888877764
No 34
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=29.85 E-value=27 Score=28.75 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=8.9
Q ss_pred cccCcCcccccc
Q 014495 187 DHHCPWVGQCIG 198 (423)
Q Consensus 187 DHHCpWvgnCIG 198 (423)
=.||||++.-..
T Consensus 55 r~~CPwv~~~~q 66 (91)
T PF08600_consen 55 REYCPWVNPSTQ 66 (91)
T ss_pred cccCCccCCccc
Confidence 358999997653
No 35
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=28.79 E-value=44 Score=30.48 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=29.9
Q ss_pred HcCcchhhhhhhccCCCCCCCCHhHHHHHHHhcCCCCCCC
Q 014495 274 LTNQTTYENFRYRYHRKMNPYNRGCGRNFVEIFFSKIPSS 313 (423)
Q Consensus 274 ~~N~TT~E~~r~~~~~~~npy~~G~~~N~~evf~~~~pps 313 (423)
-+|+|++|-+|. -.+++.-++|+.+..+|+..+...
T Consensus 103 etg~TsyelIK~----~rgg~~A~~~q~~A~~Fg~sLK~~ 138 (157)
T PF14127_consen 103 ETGSTSYELIKE----LRGGWRAFWYQTFAWLFGISLKKE 138 (157)
T ss_pred hcCCcHHHHHHH----hhCChhHHHHHHHHHHhCcccccC
Confidence 389999999883 457899999999999999776544
No 36
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=27.63 E-value=16 Score=38.45 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=20.0
Q ss_pred ceeeccccccc--cCCCCccCccCCcccc
Q 014495 158 KVKYCHTCMLY--RPPRCSHCSICNNCVE 184 (423)
Q Consensus 158 ~~kyC~tC~i~--RPpRs~HC~~C~~CV~ 184 (423)
.+++|..|... ---|-|||+.||+-+-
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC 207 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRVMC 207 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchHHH
Confidence 36899999743 3347899999998543
No 37
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=26.74 E-value=4.4e+02 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCcchhhhhhhccCCC-CCCCCHhHH
Q 014495 264 GLTAFHLYLILTNQTTYENFRYRYHRK-MNPYNRGCG 299 (423)
Q Consensus 264 ~L~~~hl~lI~~N~TT~E~~r~~~~~~-~npy~~G~~ 299 (423)
.++.|-.+++.+|+++.+.-+....-+ .+|--+|..
T Consensus 164 ~~~~f~~~~~tr~~s~~~~~~~~~~l~~~~p~L~~~v 200 (374)
T PF01528_consen 164 CSTVFTVSFITRGSSSWTYARSEFQLPKIHPKLHRVV 200 (374)
T ss_pred HHHHHHHHHHhCCCcHhHHHHHHhhhhhcChHHHHHH
Confidence 455566778889998766544333222 366444433
No 38
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=26.42 E-value=26 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=8.8
Q ss_pred eeccccccccCC-CCccCccCCc
Q 014495 160 KYCHTCMLYRPP-RCSHCSICNN 181 (423)
Q Consensus 160 kyC~tC~i~RPp-Rs~HC~~C~~ 181 (423)
+.|..|+..... ...+|..|+-
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf 23 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDF 23 (30)
T ss_dssp ---TTTS----S--EEE-TTT--
T ss_pred CcCCcCCCcCCCCceEECccCCC
Confidence 357788776666 6788888874
No 39
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=26.32 E-value=5.5e+02 Score=27.20 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHc
Q 014495 264 GLTAFHLYLILT 275 (423)
Q Consensus 264 ~L~~~hl~lI~~ 275 (423)
...+|-+||...
T Consensus 251 vv~~Y~~yL~~S 262 (429)
T PF03348_consen 251 VVSLYTTYLTWS 262 (429)
T ss_pred HHHHHHHHHHHH
Confidence 455666666443
No 40
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=23.79 E-value=26 Score=26.71 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=12.4
Q ss_pred eeeccccccc--cCCCCccCccCCcccc
Q 014495 159 VKYCHTCMLY--RPPRCSHCSICNNCVE 184 (423)
Q Consensus 159 ~kyC~tC~i~--RPpRs~HC~~C~~CV~ 184 (423)
.+.|..|... ---|-|||+.||..|=
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC 36 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVC 36 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEEC
Confidence 4578878632 2368899999998553
No 41
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.42 E-value=1e+02 Score=24.52 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhhhhh
Q 014495 47 PDVRSIFLTLFLIVTPVILFCVFVSQTL 74 (423)
Q Consensus 47 pd~~~l~~t~~LI~~p~ilf~~fv~~~l 74 (423)
.|+..++.++++++.|..+.+.+..++|
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3555566666666666665555555544
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.12 E-value=2e+02 Score=26.23 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014495 87 VAICVVFTLY 96 (423)
Q Consensus 87 ~~i~~vl~~~ 96 (423)
+++++++...
T Consensus 46 lAlg~vL~~~ 55 (191)
T PF04156_consen 46 LALGVVLLSL 55 (191)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 43
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.68 E-value=1.8e+02 Score=28.30 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHhcCCCCCcCC
Q 014495 99 FLLLLTSGRDPGIIP 113 (423)
Q Consensus 99 ~~l~~t~~~DPGiiP 113 (423)
.+|.+|--+|||+.-
T Consensus 209 gLyr~C~k~dPg~p~ 223 (259)
T PF07010_consen 209 GLYRMCWKTDPGTPE 223 (259)
T ss_pred HHHHHhhcCCCCCcc
Confidence 445566788999543
No 44
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=20.39 E-value=1.6e+02 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 014495 245 SPVSGILILYTFVTVWFVGGL 265 (423)
Q Consensus 245 ~~~~i~l~i~~~~~~~~v~~L 265 (423)
.|+.|.++++.|+.+|++|..
T Consensus 8 ~~a~Ia~mVlGFi~fWPlGla 28 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLGLA 28 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999988753
No 45
>PHA02898 virion envelope protein; Provisional
Probab=20.39 E-value=2.7e+02 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHH-HHcCcchhhhhh
Q 014495 259 VWFVGGLTAFHLYL-ILTNQTTYENFR 284 (423)
Q Consensus 259 ~~~v~~L~~~hl~l-I~~N~TT~E~~r 284 (423)
++.+.++++|..|- -|++-+++|.-|
T Consensus 56 ivl~lG~~ifs~y~r~C~~~~~~e~~r 82 (92)
T PHA02898 56 IILILGIIFFKGYNMFCGGNTTDEVSR 82 (92)
T ss_pred HHHHHHHHHHHHHhhhcCCCcccccce
Confidence 34566788888887 677777777544
Done!