Query 014495
Match_columns 423
No_of_seqs 328 out of 1796
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 54.9 5.8 0.0002 28.8 1.9 28 158-185 18-45 (56)
2 2dkt_A Ring finger and CHY zin 50.2 5.1 0.00017 34.7 1.1 46 153-198 77-126 (143)
3 3j21_g 50S ribosomal protein L 39.3 17 0.00059 25.8 2.3 28 158-185 13-40 (51)
4 1wfk_A Zinc finger, FYVE domai 37.4 13 0.00043 29.3 1.5 25 158-182 8-34 (88)
5 1joc_A EEA1, early endosomal a 33.7 17 0.00058 30.4 1.8 24 159-182 69-94 (125)
6 1dvp_A HRS, hepatocyte growth 30.2 19 0.00064 32.8 1.6 24 160-183 162-187 (220)
7 2bn5_B U1 small nuclear ribonu 30.1 19 0.00066 21.3 1.1 8 1-8 9-16 (26)
8 1vfy_A Phosphatidylinositol-3- 28.2 17 0.00057 27.4 0.7 23 161-183 13-37 (73)
9 1x4u_A Zinc finger, FYVE domai 26.1 19 0.00067 27.7 0.8 24 159-182 14-39 (84)
10 2yw8_A RUN and FYVE domain-con 24.8 21 0.00071 27.5 0.7 25 159-183 19-45 (82)
11 1z2q_A LM5-1; membrane protein 24.4 21 0.00073 27.5 0.7 25 159-183 21-47 (84)
12 2cr8_A MDM4 protein; ZF-ranbp 23.8 32 0.0011 24.4 1.5 22 160-181 12-33 (53)
13 3u5e_m 60S ribosomal protein L 21.0 41 0.0014 27.7 1.9 25 158-182 92-118 (128)
14 3zyq_A Hepatocyte growth facto 20.2 28 0.00095 32.0 0.7 24 160-183 165-190 (226)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=54.92 E-value=5.8 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.0
Q ss_pred ceeeccccccccCCCCccCccCCccccc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNNCVER 185 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~CV~r 185 (423)
..+.|..|...-|+|+..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4689999999999999999999865444
No 2
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=50.22 E-value=5.1 Score=34.70 Aligned_cols=46 Identities=26% Similarity=0.614 Sum_probs=31.9
Q ss_pred cCeeeceeeccccccccCCC-CccCccCCcccccc--c-ccCcCcccccc
Q 014495 153 NGMVVKVKYCHTCMLYRPPR-CSHCSICNNCVERF--D-HHCPWVGQCIG 198 (423)
Q Consensus 153 ng~~~~~kyC~tC~i~RPpR-s~HC~~C~~CV~rf--D-HHCpWvgnCIG 198 (423)
-|..+...||..|+++.+.+ ..||..||-|-..- | -||.=-|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 35566778999999997654 67888888887651 1 26666666644
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.34 E-value=17 Score=25.79 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred ceeeccccccccCCCCccCccCCccccc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNNCVER 185 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~CV~r 185 (423)
..+.|..|...-|+++..|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 4679999999999999999999875443
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.43 E-value=13 Score=29.28 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=17.7
Q ss_pred ceeeccccccc--cCCCCccCccCCcc
Q 014495 158 KVKYCHTCMLY--RPPRCSHCSICNNC 182 (423)
Q Consensus 158 ~~kyC~tC~i~--RPpRs~HC~~C~~C 182 (423)
....|..|... --.|-|||+.|++-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 34578888752 33578999999874
No 5
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.69 E-value=17 Score=30.41 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=16.9
Q ss_pred eeeccccccc--cCCCCccCccCCcc
Q 014495 159 VKYCHTCMLY--RPPRCSHCSICNNC 182 (423)
Q Consensus 159 ~kyC~tC~i~--RPpRs~HC~~C~~C 182 (423)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 3578888642 33588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.22 E-value=19 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.732 Sum_probs=17.6
Q ss_pred eeccccccc--cCCCCccCccCCccc
Q 014495 160 KYCHTCMLY--RPPRCSHCSICNNCV 183 (423)
Q Consensus 160 kyC~tC~i~--RPpRs~HC~~C~~CV 183 (423)
+.|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 589888742 235889999998754
No 7
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=30.10 E-value=19 Score=21.27 Aligned_cols=8 Identities=50% Similarity=1.256 Sum_probs=7.0
Q ss_pred CCCCCCCC
Q 014495 1 MYANPRPP 8 (423)
Q Consensus 1 ~~~~~~~~ 8 (423)
|+.||||+
T Consensus 9 mfsvpppp 16 (26)
T 2bn5_B 9 MFSVPPPP 16 (26)
T ss_dssp CCSCCCCS
T ss_pred eecCCCCC
Confidence 78899988
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.23 E-value=17 Score=27.38 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.3
Q ss_pred eccccccc--cCCCCccCccCCccc
Q 014495 161 YCHTCMLY--RPPRCSHCSICNNCV 183 (423)
Q Consensus 161 yC~tC~i~--RPpRs~HC~~C~~CV 183 (423)
-|..|... ---|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 57778642 235889999998743
No 9
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.11 E-value=19 Score=27.73 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=16.9
Q ss_pred eeeccccccc--cCCCCccCccCCcc
Q 014495 159 VKYCHTCMLY--RPPRCSHCSICNNC 182 (423)
Q Consensus 159 ~kyC~tC~i~--RPpRs~HC~~C~~C 182 (423)
...|..|... --.|-|||+.|++-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3467777642 34588999999874
No 10
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.75 E-value=21 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=17.5
Q ss_pred eeeccccccc--cCCCCccCccCCccc
Q 014495 159 VKYCHTCMLY--RPPRCSHCSICNNCV 183 (423)
Q Consensus 159 ~kyC~tC~i~--RPpRs~HC~~C~~CV 183 (423)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3578888642 235889999998743
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.41 E-value=21 Score=27.53 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=17.6
Q ss_pred eeeccccccc--cCCCCccCccCCccc
Q 014495 159 VKYCHTCMLY--RPPRCSHCSICNNCV 183 (423)
Q Consensus 159 ~kyC~tC~i~--RPpRs~HC~~C~~CV 183 (423)
...|..|... ---|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4578888643 235889999998743
No 12
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.78 E-value=32 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=16.9
Q ss_pred eeccccccccCCCCccCccCCc
Q 014495 160 KYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 160 kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
=-|..|+..-||--.||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 3688888888888888877643
No 13
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=20.97 E-value=41 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.813 Sum_probs=21.9
Q ss_pred ceeeccccccccCCCCccCcc--CCcc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSI--CNNC 182 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~--C~~C 182 (423)
..+.|..|...-|+|++.|+. |+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 468999999999999999994 8764
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.21 E-value=28 Score=31.96 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=17.1
Q ss_pred eeccccccc--cCCCCccCccCCccc
Q 014495 160 KYCHTCMLY--RPPRCSHCSICNNCV 183 (423)
Q Consensus 160 kyC~tC~i~--RPpRs~HC~~C~~CV 183 (423)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 479999731 224789999998753
Done!