Query 014495
Match_columns 423
No_of_seqs 328 out of 1796
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 12:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014495.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014495hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 72.2 0.85 6.2E-05 31.3 1.9 24 158-181 18-41 (56)
2 d2pg3a1 c.26.2.1 (A:1-230) Que 51.6 1.7 0.00012 37.2 0.4 25 159-185 182-206 (230)
3 d2dkta2 g.93.1.1 (A:82-137) RI 49.5 2.5 0.00018 29.0 1.0 12 173-184 34-45 (56)
4 d2dmda2 g.37.1.1 (A:8-33) Zinc 39.4 3.7 0.00027 23.2 0.4 14 174-187 2-15 (26)
5 d2c6aa1 g.41.11.1 (A:290-335) 37.6 6.2 0.00045 25.7 1.4 21 160-180 14-34 (46)
6 d1vfya_ g.50.1.1 (A:) vps27p p 37.1 5.9 0.00043 27.7 1.4 24 161-184 7-32 (67)
7 d2dkta2 g.93.1.1 (A:82-137) RI 35.1 3.8 0.00027 28.1 0.0 41 160-200 3-47 (56)
8 d2adra2 g.37.1.1 (A:131-161) A 34.6 4.2 0.0003 24.2 0.1 14 174-187 2-15 (31)
9 d1njqa_ g.37.1.3 (A:) SUPERMAN 33.2 6.5 0.00048 24.6 0.9 13 170-182 2-14 (37)
10 d1joca1 g.50.1.1 (A:1348-1411) 30.8 6.7 0.00049 27.1 0.7 24 160-183 9-34 (64)
11 d1wfka_ g.50.1.1 (A:) Zinc fin 29.7 9.1 0.00066 28.3 1.4 25 159-183 9-35 (88)
12 d2cr8a1 g.41.11.1 (A:8-48) MDM 29.5 11 0.00077 23.9 1.5 20 161-180 6-25 (41)
13 d1dvpa2 g.50.1.1 (A:149-220) H 23.4 11 0.00079 26.7 0.7 24 160-183 14-39 (72)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=72.20 E-value=0.85 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=21.8
Q ss_pred ceeeccccccccCCCCccCccCCc
Q 014495 158 KVKYCHTCMLYRPPRCSHCSICNN 181 (423)
Q Consensus 158 ~~kyC~tC~i~RPpRs~HC~~C~~ 181 (423)
..+.|..|...-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 468999999999999999998875
No 2
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=51.56 E-value=1.7 Score=37.17 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=20.8
Q ss_pred eeeccccccccCCCCccCccCCccccc
Q 014495 159 VKYCHTCMLYRPPRCSHCSICNNCVER 185 (423)
Q Consensus 159 ~kyC~tC~i~RPpRs~HC~~C~~CV~r 185 (423)
...-.+| |+|.|.+||-.|..|++|
T Consensus 182 ~~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 182 RYHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hhccCCC--CCCCCCCCCCCCHhHHHH
Confidence 3455677 788899999999999998
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.53 E-value=2.5 Score=29.03 Aligned_cols=12 Identities=42% Similarity=0.977 Sum_probs=6.4
Q ss_pred CccCccCCcccc
Q 014495 173 CSHCSICNNCVE 184 (423)
Q Consensus 173 s~HC~~C~~CV~ 184 (423)
-.||..|+.|+.
T Consensus 34 ffHC~~C~~C~~ 45 (56)
T d2dkta2 34 FFHCLKCNLCLT 45 (56)
T ss_dssp EEEETTTTEEEE
T ss_pred ccccCccccccC
Confidence 445555555553
No 4
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.41 E-value=3.7 Score=23.17 Aligned_cols=14 Identities=36% Similarity=1.089 Sum_probs=11.6
Q ss_pred ccCccCCccccccc
Q 014495 174 SHCSICNNCVERFD 187 (423)
Q Consensus 174 ~HC~~C~~CV~rfD 187 (423)
|.|.+|+.|..|-|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 56999999988766
No 5
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.61 E-value=6.2 Score=25.71 Aligned_cols=21 Identities=38% Similarity=0.789 Sum_probs=18.0
Q ss_pred eeccccccccCCCCccCccCC
Q 014495 160 KYCHTCMLYRPPRCSHCSICN 180 (423)
Q Consensus 160 kyC~tC~i~RPpRs~HC~~C~ 180 (423)
=.|..|+..-||--.||..|=
T Consensus 14 WkC~~C~~~N~Pl~ryC~rCW 34 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred ccCccccccCCcchhHhHHHH
Confidence 469999999999999988773
No 6
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.14 E-value=5.9 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=16.2
Q ss_pred ecccccc--ccCCCCccCccCCcccc
Q 014495 161 YCHTCML--YRPPRCSHCSICNNCVE 184 (423)
Q Consensus 161 yC~tC~i--~RPpRs~HC~~C~~CV~ 184 (423)
-|..|.. -.-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3777764 23457899999987543
No 7
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.10 E-value=3.8 Score=28.09 Aligned_cols=41 Identities=32% Similarity=0.733 Sum_probs=29.8
Q ss_pred eeccccccccCC-CCccCccCCcccccc--c-ccCcCcccccccc
Q 014495 160 KYCHTCMLYRPP-RCSHCSICNNCVERF--D-HHCPWVGQCIGKR 200 (423)
Q Consensus 160 kyC~tC~i~RPp-Rs~HC~~C~~CV~rf--D-HHCpWvgnCIG~r 200 (423)
-||..|+++--. ...||..||-|-..- | -||.=-+.|+...
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 589999988333 368999999997432 2 3888888887653
No 8
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=34.65 E-value=4.2 Score=24.22 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.1
Q ss_pred ccCccCCccccccc
Q 014495 174 SHCSICNNCVERFD 187 (423)
Q Consensus 174 ~HC~~C~~CV~rfD 187 (423)
..|.+|++|-.|-|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999998877
No 9
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.22 E-value=6.5 Score=24.56 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=11.0
Q ss_pred CCCCccCccCCcc
Q 014495 170 PPRCSHCSICNNC 182 (423)
Q Consensus 170 PpRs~HC~~C~~C 182 (423)
|+|.+-|+.|++-
T Consensus 2 p~r~~~C~~C~k~ 14 (37)
T d1njqa_ 2 PPRSYTCSFCKRE 14 (37)
T ss_dssp CSSSEECTTTCCE
T ss_pred CCCccCCCCCCCc
Confidence 7899999999873
No 10
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.78 E-value=6.7 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=16.6
Q ss_pred eecccccc--ccCCCCccCccCCccc
Q 014495 160 KYCHTCML--YRPPRCSHCSICNNCV 183 (423)
Q Consensus 160 kyC~tC~i--~RPpRs~HC~~C~~CV 183 (423)
+-|..|.. ----|-|||+.|++.+
T Consensus 9 ~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 9 QNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCcCCcccCCccccchhhhCCee
Confidence 46777753 2234789999999854
No 11
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.69 E-value=9.1 Score=28.25 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=17.6
Q ss_pred eeecccccc--ccCCCCccCccCCccc
Q 014495 159 VKYCHTCML--YRPPRCSHCSICNNCV 183 (423)
Q Consensus 159 ~kyC~tC~i--~RPpRs~HC~~C~~CV 183 (423)
...|..|.. ----|-|||+.|++.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 356888864 2345789999999853
No 12
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.47 E-value=11 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=16.4
Q ss_pred eccccccccCCCCccCccCC
Q 014495 161 YCHTCMLYRPPRCSHCSICN 180 (423)
Q Consensus 161 yC~tC~i~RPpRs~HC~~C~ 180 (423)
.|..|...-||=-.||..|=
T Consensus 6 kC~~C~~~N~Pl~ryC~rCW 25 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRCW 25 (41)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecCcccccCCcchhHHHHHH
Confidence 58889888898888887764
No 13
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.41 E-value=11 Score=26.66 Aligned_cols=24 Identities=29% Similarity=0.743 Sum_probs=17.2
Q ss_pred eecccccc--ccCCCCccCccCCccc
Q 014495 160 KYCHTCML--YRPPRCSHCSICNNCV 183 (423)
Q Consensus 160 kyC~tC~i--~RPpRs~HC~~C~~CV 183 (423)
..|..|.. ----|-|||+.|++.+
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccccCCCcccCccccccccccCCee
Confidence 35888864 2345889999999854
Done!