BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014496
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8FYS5|GLMM_SHESH Phosphoglucosamine mutase OS=Shewanella sediminis (strain HAW-EB3)
GN=glmM PE=3 SV=1
Length = 443
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 10 IRGKVGAGKMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYLFESAMEAGLSAAGL 69
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 70 NVMLMGP 76
>sp|A6WQD3|GLMM2_SHEB8 Phosphoglucosamine mutase 2 OS=Shewanella baltica (strain OS185)
GN=glmM2 PE=3 SV=1
Length = 450
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + A K W + + TK+ ++GK + G +E+ EA + A
Sbjct: 11 VRGKVGEFPITPDFAMKLGWAAGTVLASTGTKEVLIGKDTRSSGYMLESAMEAGFSAAGV 70
Query: 375 NFVMLTP 381
N ++ P
Sbjct: 71 NVALIGP 77
>sp|A1RGX0|GLMM_SHESW Phosphoglucosamine mutase OS=Shewanella sp. (strain W3-18-1)
GN=glmM PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A6WRH3|GLMM1_SHEB8 Phosphoglucosamine mutase 1 OS=Shewanella baltica (strain OS185)
GN=glmM1 PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A4Y9C5|GLMM_SHEPC Phosphoglucosamine mutase OS=Shewanella putrefaciens (strain CN-32
/ ATCC BAA-453) GN=glmM PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A0KTZ1|GLMM_SHESA Phosphoglucosamine mutase OS=Shewanella sp. (strain ANA-3) GN=glmM
PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|Q8EHM0|GLMM_SHEON Phosphoglucosamine mutase OS=Shewanella oneidensis (strain MR-1)
GN=glmM PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A3D7L1|GLMM_SHEB5 Phosphoglucosamine mutase OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=glmM PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A9KZX6|GLMM1_SHEB9 Phosphoglucosamine mutase 1 OS=Shewanella baltica (strain OS195)
GN=glmM1 PE=3 SV=1
Length = 445
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTKKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|A1S457|GLMM1_SHEAM Phosphoglucosamine mutase 1 OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=glmM1 PE=3 SV=1
Length = 445
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W + + TK ++GK + G E+ EA + A
Sbjct: 12 IRGKVGADQMTPELALKLGWAAGRVLARTGTKKVIIGKDTRISGYMFESALEAGFSSAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVLLMGP 78
>sp|A1S7U2|GLMM2_SHEAM Phosphoglucosamine mutase 2 OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=glmM2 PE=3 SV=1
Length = 452
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + A K W + S TK+ ++GK + G +E+ EA + A
Sbjct: 11 VRGKVGEFPITPDFAMKLGWAAGTVMAASGTKEVIIGKDTRLSGYMLESAMEAGFCAAGV 70
Query: 375 NFVMLTP 381
N + P
Sbjct: 71 NVALTGP 77
>sp|A3QGV0|GLMM_SHELP Phosphoglucosamine mutase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=glmM PE=3 SV=1
Length = 443
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S + TK ++GK + G E+ EA A
Sbjct: 10 IRGKVGAGKMTPELALKLGWAAGRVLSRTGTKKVIIGKDTRISGYLFESAMEAGLSAAGL 69
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 70 NVMLMGP 76
>sp|Q0HWV8|GLMM2_SHESR Phosphoglucosamine mutase 2 OS=Shewanella sp. (strain MR-7)
GN=glmM2 PE=3 SV=1
Length = 450
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + A K W + + TK+ ++GK + G +E+ EA + A
Sbjct: 11 VRGKVGTFPITPDFAMKLGWAAGTVLASTGTKEVLIGKDTRISGYMLESAMEAGFSAAGV 70
Query: 375 NFVMLTP 381
N ++ P
Sbjct: 71 NVALIGP 77
>sp|Q12QI6|GLMM_SHEDO Phosphoglucosamine mutase OS=Shewanella denitrificans (strain OS217
/ ATCC BAA-1090 / DSM 15013) GN=glmM PE=3 SV=1
Length = 445
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S + TK ++GK + G E+ EA A
Sbjct: 12 IRGKVGAGKMTPELALKLGWAAGRVLSRTGTKKVIIGKDTRISGYLFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVLLVGP 78
>sp|A9KVT4|GLMM2_SHEB9 Phosphoglucosamine mutase 2 OS=Shewanella baltica (strain OS195)
GN=glmM2 PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + A K W + + TK+ ++GK + G +E+ EA + A
Sbjct: 11 VRGKVGDFPITPDFAMKLGWAAGTVLASTGTKEVLIGKDTRISGYMLESAMEAGFSAAGV 70
Query: 375 NFVMLTP 381
N ++ P
Sbjct: 71 NVALIGP 77
>sp|Q9SCV3|BGAL9_ARATH Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1
Length = 887
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 113 FVSNSDPVLRIRSSTY-YPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAML 171
+ +S L +R Y +W FG F P+ ++ + G+ + T N F +
Sbjct: 114 LIGSSGLYLHLRIGPYVCAEWNFGGF---PVWLRD--------IPGIEFRTDNEPFKKEM 162
Query: 172 MPFAIKD-ELPKNAWLVSKMGRLTVGVQYEPQYGGKEDA---KYKNLMNWSYAIGYGVGS 227
F K +L + A L G + +Q E +YG E + K K+ + W+ ++ G+G+
Sbjct: 163 QKFVTKIVDLMREAKLFCWQGGPIIMLQIENEYGDVEKSYGQKGKDYVKWAASMALGLGA 222
Query: 228 GSP 230
G P
Sbjct: 223 GVP 225
>sp|Q0HXS0|GLMM1_SHESR Phosphoglucosamine mutase 1 OS=Shewanella sp. (strain MR-7)
GN=glmM1 PE=3 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S T ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTNKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|Q0HLG6|GLMM1_SHESM Phosphoglucosamine mutase 1 OS=Shewanella sp. (strain MR-4)
GN=glmM1 PE=3 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + +A K W S S T ++GK + G E+ EA A
Sbjct: 12 IRGKVGSGQMTPELALKLGWAAGRVLSRSGTNKVIIGKDTRISGYMFESALEAGLSAAGL 71
Query: 375 NFVMLTP 381
N +++ P
Sbjct: 72 NVMLMGP 78
>sp|Q0HKK5|GLMM2_SHESM Phosphoglucosamine mutase 2 OS=Shewanella sp. (strain MR-4)
GN=glmM2 PE=3 SV=1
Length = 450
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 315 LKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADP 374
++GKVG + A + W + + TK+ ++GK + G +E+ EA + A
Sbjct: 11 VRGKVGTFPITPDFAMRLGWAAGTVLASTGTKEVLIGKDTRISGYMLESAMEAGFSAAGV 70
Query: 375 NFVMLTP 381
N ++ P
Sbjct: 71 NVALIGP 77
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,847,960
Number of Sequences: 539616
Number of extensions: 7274772
Number of successful extensions: 14538
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 14519
Number of HSP's gapped (non-prelim): 28
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)