Query 014496
Match_columns 423
No_of_seqs 21 out of 23
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 12:38:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 98.8 5.2E-07 1.8E-11 85.5 19.2 266 40-362 22-294 (295)
2 3nsg_A Outer membrane protein 72.3 55 0.0019 30.6 12.6 148 191-357 147-311 (341)
3 3qlb_A FETA, enantio-pyochelin 61.8 75 0.0026 30.8 11.5 75 298-372 644-726 (748)
4 2fgq_X OMP32, outer membrane p 50.4 86 0.0029 28.9 9.4 152 189-366 144-300 (332)
5 3emn_X Voltage-dependent anion 41.2 97 0.0033 29.3 8.4 124 92-223 123-259 (295)
6 3efm_A FAUA, ferric alcaligin 39.2 59 0.002 30.9 6.6 161 155-361 439-628 (707)
7 3h7c_X Agmatine deiminase; str 32.6 27 0.00093 34.7 3.3 54 40-107 190-249 (383)
8 2wjr_A Probable N-acetylneuram 30.9 53 0.0018 29.9 4.6 42 279-320 29-75 (214)
9 1xkn_A Putative peptidyl-argin 26.1 54 0.0018 32.1 4.1 54 40-107 184-242 (355)
10 1zbr_A AAQ65385, conserved hyp 26.0 56 0.0019 31.9 4.2 54 40-107 174-233 (349)
11 2vf1_A Capsid protein; dsRNA v 24.5 33 0.0011 35.3 2.2 75 303-405 311-387 (525)
12 3hvm_A Agmatine deiminase; hyd 23.6 73 0.0025 31.0 4.4 54 40-107 168-227 (330)
13 2jer_A Agmatine deiminase; hyd 21.1 77 0.0026 31.5 4.1 54 40-107 185-243 (389)
14 2f1v_A Outer membrane protein 21.1 53 0.0018 28.9 2.7 21 299-319 134-154 (197)
15 3sc0_A Methylmalonic aciduria 21.0 20 0.00069 34.2 -0.1 50 72-133 101-158 (241)
16 2ewo_A Putative agmatine deimi 20.0 69 0.0024 31.6 3.5 53 41-107 190-247 (377)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.77 E-value=5.2e-07 Score=85.50 Aligned_cols=266 Identities=16% Similarity=0.256 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHHHHHhhccce-eeeeecCCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCCceeeeeeccCC
Q 014496 40 FAKLALKCLFDDYFEEARHFS-TRIMLKPIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPHTFMDLFVSNSD 118 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~-~rimLkP~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPhTF~Dl~vSt~~ 118 (423)
.||.|.-+|..|| |+. ..+-+|=--.--|-+.++-+.-.| .+.+.|+..-++.- .+-..=+|..++|.+
T Consensus 22 igK~AkDll~kdy-----~~~~~kl~~kt~s~~gv~ft~~g~~~~~---~~~v~g~le~kyk~--~~~g~t~~~kw~t~n 91 (295)
T 3emn_X 22 LGKSARDVFTKGY-----GFGLIKLDLKTKSENGLEFTSSGSANTE---TTKVNGSLETKYRW--TEYGLTFTEKWNTDN 91 (295)
T ss_dssp TTHHHHHHHHTTC-----CTTEEEEEEECCCSSEEEEEEEEEEETT---TCCEEEEEEEEEEE--TTTTEEEEEEEETTS
T ss_pred cccchHHhccCCc-----CCCCEEEEEEEEcCCCEEEEEEEEecCC---CCceeeEEEEEEEe--cCCcEEEEEEEeCCC
Confidence 4899999999998 344 345565544444666655443322 36788888776642 222234466888877
Q ss_pred c---eEEEeeccccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceeeecccccCCCCcceeEEeeccccee
Q 014496 119 P---VLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAMLMPFAIKDELPKNAWLVSKMGRLTV 195 (423)
Q Consensus 119 p---~l~~Rsc~y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~~Pf~~s~e~pk~aWLV~k~G~lta 195 (423)
- .+.++-.. -| |+=+-.-.-+.+. .....+.+.+.|-.+++.+.+.+. +...+-+ -...+|-.--.+.+
T Consensus 92 ~l~t~i~~~~~l-~~--Glk~~~~~~~~P~---~~~ks~kl~~~Y~~~~~~~~~~v~-l~~~~P~-i~~s~v~g~~~~~~ 163 (295)
T 3emn_X 92 TLGTEITVEDQL-AR--GLKLTFDSSFSPN---TGKKNAKIKTGYKREHINLGCDVD-FDIAGPS-IRGALVLGYEGWLA 163 (295)
T ss_dssp CEEEEEEEESSS-ST--TEEEEEEEEEETT---TTEEEEEEEEEEEETTEEEEEEEE-ECTTCCE-EEEEEEEEETTEEE
T ss_pred cEEEEEEEcccc-CC--ceEEEEEEEECCC---CCCcceEEEEEEEcCCEeEEEEEE-eccCCCE-EEEEEEEeeCCEEE
Confidence 5 23344311 12 2211111111111 113467999999999999877763 1000100 11222222345777
Q ss_pred eeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccEeeeee
Q 014496 196 GVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEIVGITN 275 (423)
Q Consensus 196 GvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvgITN 275 (423)
|.|..=... -.++..|++|++|- .|.|.+++.+...+.|.+||||.+ || +
T Consensus 164 G~e~~yd~~------~~~~t~~n~~~gY~-------~~d~~~s~~l~~~~~~~aSy~qkv-------s~---~------- 213 (295)
T 3emn_X 164 GYQMNFETS------KSRVTQSNFAVGYK-------TDEFQLHTNVNDGTEFGGSIYQKV-------NK---K------- 213 (295)
T ss_dssp EEEEEEETT------TTEEEEEEEEEEEE-------CSSEEEEEEEETTTEEEEEEEEEC-------SS---S-------
T ss_pred EEEEEEEeC------CCCeeeEEEEEEEc-------CCCEEEEEEECCCCeEEEEEEEEC-------CC---c-------
Confidence 776443321 12356699999994 357899999988889999999875 33 1
Q ss_pred eeeeeeEEEEeeccccccCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEEEeeeccc---Cc
Q 014496 276 YIDFGFELQTRIDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVV---GK 352 (423)
Q Consensus 276 YiD~gfEl~t~vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~---g~ 352 (423)
+..|-|+...... .+.+|.+|+.|+.+++..+|||+-..+- +++++..=|+|-++|++++.-||.+ +.
T Consensus 214 -~~~g~e~~~~~~~-------~~~~~tvG~ky~ld~~~~vKakvn~~g~-v~~~y~~kl~p~v~ltls~~iD~~~l~~~~ 284 (295)
T 3emn_X 214 -LETAVNLAWTAGN-------SNTRFGIAAKYQVDPDACFSAKVNNSSL-IGLGYTQTLKPGIKLTLSALLDGKNVNAGG 284 (295)
T ss_dssp -EEEEEEEEEETTE-------EEEEEEEEEEECCSSSEEEEEEEETTSE-EEEEEEEEEETTEEEEEEEEEESSCTTTSC
T ss_pred -eEEEEEEEEeccC-------CCcEEEEEEEEEcCCCCEEEEEECCCCE-EEEEEEEecCCCcEEEEEEEECccccCCCC
Confidence 3455677654422 4677999999999999999999988754 6777777778999999999999986 89
Q ss_pred ceeeeEEEec
Q 014496 353 TSYGFGIRVE 362 (423)
Q Consensus 353 ~~yGFgi~VE 362 (423)
..+|+|+.+|
T Consensus 285 ~K~Gl~l~l~ 294 (295)
T 3emn_X 285 HKLGLGLEFQ 294 (295)
T ss_dssp CEEEEEEEEE
T ss_pred CcEEEEEEEe
Confidence 9999999887
No 2
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=72.31 E-value=55 Score=30.65 Aligned_cols=148 Identities=11% Similarity=0.006 Sum_probs=74.6
Q ss_pred ccceeeeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccccE
Q 014496 191 GRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEEDEI 270 (423)
Q Consensus 191 G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~~v 270 (423)
|.|++++||..-.........++-+.|+.++.|-.| || ++...-+-.+...--.+ -...-+..++
T Consensus 147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g---~l--~~~~~Y~~~~~~~~~~~----------~~~~~~~~~~ 211 (341)
T 3nsg_A 147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFD---GF--GVTAAYSNSKRTNDQQD----------RDGNGDRAES 211 (341)
T ss_dssp SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEET---TE--EEEEEEEEECCCSTTSS----------SSSCCSCEEE
T ss_pred CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcC---CE--EEEEEEEeecCcccccc----------cccCccceEE
Confidence 889999999865321111134455669999999986 66 34444444433211000 0011233344
Q ss_pred eeeeeeeeee-eEEEEeecccccc------------CCCCCcchheeccccccceeEEeeecCCCcccee---eee-ecc
Q 014496 271 VGITNYIDFG-FELQTRIDDAKTA------------NSIPESSFQVAASWQANKNFLLKGKVGPLSSSVA---MAF-KSW 333 (423)
Q Consensus 271 vgITNYiD~g-fEl~t~vd~~~~~------------~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~a---laf-ksW 333 (423)
.++.---||| +.|.......+.. .......+.++|+||+...+.|++-..-....-. ..- ..|
T Consensus 212 ~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 291 (341)
T 3nsg_A 212 RAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLA 291 (341)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCCCEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEE
T ss_pred EEEEeEEEeCCEEEEEEEEEEEeccccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCcc
Confidence 4444334444 2222111111100 1122345899999999988777653221110000 000 123
Q ss_pred ccceeEEEEEEeeecccCcceeee
Q 014496 334 WKPSFTFSISATKDRVVGKTSYGF 357 (423)
Q Consensus 334 w~PSfTfs~sA~~D~~~g~~~yGF 357 (423)
++ +++-+.+..+|.+.-|.-
T Consensus 292 ~~----~~lg~~Y~LSKrT~lY~~ 311 (341)
T 3nsg_A 292 KY----IQAGATYYFNKNMNVWVD 311 (341)
T ss_dssp EE----EEEEEEECCCSSEEEEEE
T ss_pred EE----EEEEEEEEecCCEEEEEE
Confidence 32 678888988888877763
No 3
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport, ferri-enantiopyochelin, outer M metal transport; HET: CIT EFE; 3.26A {Pseudomonas fluorescens}
Probab=61.82 E-value=75 Score=30.75 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=42.8
Q ss_pred Ccchheecccccc----ceeEEeeecCCCccceeeeee-ccccceeEEEEEEeeeccc---CcceeeeEEEeccCccccc
Q 014496 298 ESSFQVAASWQAN----KNFLLKGKVGPLSSSVAMAFK-SWWKPSFTFSISATKDRVV---GKTSYGFGIRVENLREASY 369 (423)
Q Consensus 298 ~~~~q~aASWQaN----KNfLlKgK~G~~~ss~alafk-sWw~PSfTfs~sA~~D~~~---g~~~yGFgi~VEnlr~~sY 369 (423)
.-++.+.+.|+.. ++|-+-..+-=.+....-... .+-.+..++.+++.++... ++..+-+.+.|+||-+-.|
T Consensus 644 ~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~y~~~d~~~~y~~~~~~~~~~~~~l~l~v~NL~d~~y 723 (748)
T 3qlb_A 644 EKMASLWADYTLPEGPLSGLGFGAGVRYIGSTEADAANTQRVPSYTLLDAAVHYDFDKLIPAAKGLRLAVNATNLTDKHY 723 (748)
T ss_dssp SEEEEEEEEEECCSSTTTTEEEEEEEEEECCEECSTTSCCEECCEEEEEEEEEEEGGGSSGGGTTEEEEEEEESTTCCCC
T ss_pred chheeEEEEEEcCCCCcCCeEEEeeEEEEeeEecCCCCCeecCceEEEEeEeeEEcccCccCCCCeEEEEEEEcCcCccc
Confidence 3456667777766 455543322111111110111 2334556788999998851 2456788899999998877
Q ss_pred ccc
Q 014496 370 QRA 372 (423)
Q Consensus 370 qRa 372 (423)
...
T Consensus 724 ~~~ 726 (748)
T 3qlb_A 724 YEG 726 (748)
T ss_dssp EEE
T ss_pred ccc
Confidence 643
No 4
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=50.38 E-value=86 Score=28.92 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=79.6
Q ss_pred ecccceeeeeeecCCCCCcccccccccCcceeeeeccCCCCCCCccceeeeeeecccchhhhhHHHhhhhhhhcCCCccc
Q 014496 189 KMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGYGVGSGSPLSPSFNFGLELAKSSVFIASFYQHVVVQRRVKNPLEED 268 (423)
Q Consensus 189 k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~YGVGs~SPLsPSFnf~lEL~~ssq~iaSFyqH~vVQRrvkNP~Ee~ 268 (423)
.+|.|+++++|.+-...+......+-+.|+.++.|-.| || ++...-+-.+...- ....+.
T Consensus 144 ~~~G~~~~a~Y~~g~~~~~g~~~~~~~~~~~~~~Y~~g---~~--~~~~~Y~~~~~~~~---------------~~~~~~ 203 (332)
T 2fgq_X 144 NFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNG---PL--SASLGLAQQKTAVG---------------GLATDR 203 (332)
T ss_dssp CBTTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECS---SE--EEEEEEEEEEEEET---------------TEEEEE
T ss_pred ccCCEEEEEEEEcCCCCcCCCCCCCCcEEEEEEEEecC---CE--EEEEEEEEEecCCC---------------Ccccce
Confidence 67999999999873211001023334559999999875 55 33333343332210 001233
Q ss_pred cEeeeeeeeeee-eEEEEeeccccc----cCCCCCcchheeccccccceeEEeeecCCCccceeeeeeccccceeEEEEE
Q 014496 269 EIVGITNYIDFG-FELQTRIDDAKT----ANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAFKSWWKPSFTFSIS 343 (423)
Q Consensus 269 ~vvgITNYiD~g-fEl~t~vd~~~~----~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alafksWw~PSfTfs~s 343 (423)
++.++.--.||| +.|.......+. ........+.++|+||+...+.|++-..-..... .-..| -.+++.
T Consensus 204 ~~~~~g~~Y~~g~~~l~~~Y~~~~~~~~~~~~~~~~~~~~ga~y~~t~~~~~~~~y~~~~~~~--~~~~~----~~~~lg 277 (332)
T 2fgq_X 204 DEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKA--IDSKA----HQITLG 277 (332)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEGG--GTEEE----EEEEEE
T ss_pred EEEEEEEEEEECCEEEEEEEEEEEccCCCCCcceeeEEEEEEEEEecCceEEEEEEEEEccCC--CCCCe----EEEEEE
Confidence 343333323443 222111111110 0111234588999999977788876433221100 00122 267888
Q ss_pred EeeecccCcceeeeEEEeccCcc
Q 014496 344 ATKDRVVGKTSYGFGIRVENLRE 366 (423)
Q Consensus 344 A~~D~~~g~~~yGFgi~VEnlr~ 366 (423)
+.++.+|++.-|.-..++++=..
T Consensus 278 ~~Y~LSKrT~lY~~~~~~~~~~~ 300 (332)
T 2fgq_X 278 YVHNLSKRTALYGNLAFLKNKDA 300 (332)
T ss_dssp EEEESSSSEEEEEEEEEEEECTT
T ss_pred EEEccccchHheeeeeeEeccCC
Confidence 99999999999988877765443
No 5
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=41.16 E-value=97 Score=29.26 Aligned_cols=124 Identities=16% Similarity=0.170 Sum_probs=71.4
Q ss_pred ccceEEEEeecCCCCCceeeeeeccCCceEEEeeccccCCcccceeeeeeeeecccCCCCCcceeeeeecccccccceee
Q 014496 92 VGNALFRWQRELDDPHTFMDLFVSNSDPVLRIRSSTYYPKWGFGAFGTIPLLMKKRISSEDYGVMGLRYGTGNLSFGAML 171 (423)
Q Consensus 92 ~G~alfRwQ~d~~dPhTF~Dl~vSt~~p~l~~Rsc~y~Pkyg~GAFgv~PL~~~~~~~sedygvmGlRYgS~nlS~Ga~~ 171 (423)
.|.....+..+--.-...+|| .+.+|++..-.+.-||.+-+|+=..|=....+. ..| -+|+||...++.+.+++
T Consensus 123 s~kl~~~Y~~~~~~~~~~v~l--~~~~P~i~~s~v~g~~~~~~G~e~~yd~~~~~~---t~~-n~~~gY~~~d~~~s~~l 196 (295)
T 3emn_X 123 NAKIKTGYKREHINLGCDVDF--DIAGPSIRGALVLGYEGWLAGYQMNFETSKSRV---TQS-NFAVGYKTDEFQLHTNV 196 (295)
T ss_dssp EEEEEEEEEETTEEEEEEEEE--CTTCCEEEEEEEEEETTEEEEEEEEEETTTTEE---EEE-EEEEEEECSSEEEEEEE
T ss_pred ceEEEEEEEcCCEeEEEEEEe--ccCCCEEEEEEEEeeCCEEEEEEEEEEeCCCCe---eeE-EEEEEEcCCCEEEEEEE
Confidence 455555555433332334553 468898888888888999999988885432211 123 57899999888888887
Q ss_pred ecccc---------cCCCCc---ceeEE-eecccceeeeeeecCCCCCcccccccccCcceeeee
Q 014496 172 MPFAI---------KDELPK---NAWLV-SKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGY 223 (423)
Q Consensus 172 ~Pf~~---------s~e~pk---~aWLV-~k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~Y 223 (423)
..... +..+-- -.|-. .+...+|+|.||+-....-..+++.+ ||..+++|
T Consensus 197 ~~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~--~g~v~~~y 259 (295)
T 3emn_X 197 NDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNN--SSLIGLGY 259 (295)
T ss_dssp ETTTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEET--TSEEEEEE
T ss_pred CCCCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECC--CCEEEEEE
Confidence 65331 111100 12332 34567888888886533333344433 24444444
No 6
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein, membrane receptor, membrane transporter, membrane, TONB box; 2.33A {Bordetella pertussis}
Probab=39.16 E-value=59 Score=30.93 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=0.0
Q ss_pred eeeeeeccccc-----------ccceeeecccccCCCCcceeEEeecccceeeeeeecCCCCCcccccccccCcceeeee
Q 014496 155 VMGLRYGTGNL-----------SFGAMLMPFAIKDELPKNAWLVSKMGRLTVGVQYEPQYGGKEDAKYKNLMNWSYAIGY 223 (423)
Q Consensus 155 vmGlRYgS~nl-----------S~Ga~~~Pf~~s~e~pk~aWLV~k~G~ltaGvQykp~~g~~~~~~~~~l~nws~A~~Y 223 (423)
..|+||...+. .-...+.|. +|+.|++- ++|+.-++|
T Consensus 439 ~~G~R~d~~~~~~~~~~~~~~~~~~~~~~P~--------------------~~l~y~~~------------~~~~l~asy 486 (707)
T 3efm_A 439 IVGDRWSDWKTKQMYFGSRREYRIKNQFTPY--------------------AGLTYDIN------------DTYTAYASY 486 (707)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEEEEEEEE--------------------EEEEEECS------------SSEEEEEEE
T ss_pred EEEeeEEEEEecccccCCcccccccccccce--------------------EEEEEEcC------------CCeEEEEEe
Q ss_pred ccCCCCC---------CCc----cceeeeeee---cccchhhhhHHHhhhhhhhcCCCccccEee-eeeeeeeeeEEEEe
Q 014496 224 GVGSGSP---------LSP----SFNFGLELA---KSSVFIASFYQHVVVQRRVKNPLEEDEIVG-ITNYIDFGFELQTR 286 (423)
Q Consensus 224 GVGs~SP---------LsP----SFnf~lEL~---~ssq~iaSFyqH~vVQRrvkNP~Ee~~vvg-ITNYiD~gfEl~t~ 286 (423)
|-|-..| |.| ++.++++.. +.-.+-+++|+.-.--..+..+.....-.+ ++.|...|=.-..-
T Consensus 487 ~~~~~~p~~~~~~n~~L~pE~~~~~ElG~~~~~~~~~l~~~~~~f~~~~~d~i~~~~~~~~~~~~~~~~~~N~g~~~~~G 566 (707)
T 3efm_A 487 TEIFQPQNARDTSGGILPPIKSKSYELGLKAAYLEGRLNTSAALFQTRQDNLAQVIPGSSIPGFPNMQASRAASGAKVEG 566 (707)
T ss_dssp EEEEECCCCBCSSSCBCCCEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEESEEEECTTCCCTTSSSSCCEEEECCCEEEE
T ss_pred eEEecCCCcccCCCCcCCCcccceEEEEEeecccCCCEEEEEEEEEEEeeceEeecccccCCCCcceeEEeecCcEEEEE
Q ss_pred eccccccCCCCCcchheeccccccceeEEeeecCCCccceeeee-eccccceeEEEEEEeeecccCcceeeeEEEe
Q 014496 287 IDDAKTANSIPESSFQVAASWQANKNFLLKGKVGPLSSSVAMAF-KSWWKPSFTFSISATKDRVVGKTSYGFGIRV 361 (423)
Q Consensus 287 vd~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G~~~ss~alaf-ksWw~PSfTfs~sA~~D~~~g~~~yGFgi~V 361 (423)
+ .+.++|++.++|-+.+-..=..+-..-.- .--..|..++++.+.+++......+.+++.+
T Consensus 567 ~--------------El~~~~~~~~~~~~~~~~t~~~~~~~~g~~~~~~~p~~~~~~~~~y~~~~~~~~~~~~~~~ 628 (707)
T 3efm_A 567 I--------------DLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTYRLPGALHRLTVGGGV 628 (707)
T ss_dssp E--------------EEEEEEEEETTEEEEEEEEEEEEECTTSCBCCCSSCSEEEEEEEEEECSSTTTTEEEEEEE
T ss_pred E--------------EEEEeEEecCCeEEEEEEEEEEEEecCCCccccCCCCceEEEEEEEEccCCCCCEEEEEEE
No 7
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=32.60 E-value=27 Score=34.73 Aligned_cols=54 Identities=22% Similarity=0.487 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhhccceeeeeec-CC-----CCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 40 FAKLALKCLFDDYFEEARHFSTRIMLK-PI-----DDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~~rimLk-P~-----dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
..|-++...+.+|| .+.-=|-|. .+ -|-|||-+|+.-.| |.+++-|..|.+|||
T Consensus 190 lsk~eIE~~L~~~L----Gv~kvIWL~~Gl~gDddTdgHID~larFv~p----------g~Vl~~~~~d~~dp~ 249 (383)
T 3h7c_X 190 MSKEQIEEELKKYL----GVQSFIWLPRGLYGDEDTNGHIDNMCCFARP----------GVVLLSWTDDETDPQ 249 (383)
T ss_dssp SCHHHHHHHHHHHH----CCCEEEEESCCCTTCGGGTCCGGGTEEEEET----------TEEEEEECCCTTSHH
T ss_pred CCHHHHHHHHHHHh----CCcEEEEeCCCcCCCCCcCcceeeeEEecCC----------CEEEEEccCCCCCcC
Confidence 46778888888888 232235565 23 37899999999999 999999999999987
No 8
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=30.89 E-value=53 Score=29.93 Aligned_cols=42 Identities=5% Similarity=0.115 Sum_probs=23.3
Q ss_pred eeeEEEEeec-----cccccCCCCCcchheeccccccceeEEeeecC
Q 014496 279 FGFELQTRID-----DAKTANSIPESSFQVAASWQANKNFLLKGKVG 320 (423)
Q Consensus 279 ~gfEl~t~vd-----~~~~~~~~~~~~~q~aASWQaNKNfLlKgK~G 320 (423)
|||++.+... ..+....++..++.+.-.|++|+||.|.-=+-
T Consensus 29 ~g~s~E~k~~~~~~~~~~~~~~~ng~E~~~~Y~~k~~d~~~l~PG~~ 75 (214)
T 2wjr_A 29 WWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGML 75 (214)
T ss_dssp EEEEEEEEEEEEC----------CEEEEEEEECEESSSSEEEEEEEE
T ss_pred ceEEEEEEEecCCCcCcccccccccEEEEEEEEEEcCCCEEEecceE
Confidence 4667776543 22222233335677777888999998876543
No 9
>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein struc initiative, PSI; 1.60A {Chlorobium tepidum} SCOP: d.126.1.6
Probab=26.14 E-value=54 Score=32.12 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHhhccceeeeeec-----CCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 40 FAKLALKCLFDDYFEEARHFSTRIMLK-----PIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~~rimLk-----P~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
.+|-++...+.+|+ ....-|-|. ...|-|||-+|+.-.| |.++.-|..|.+|||
T Consensus 184 ls~~~ie~~L~~~L----G~~~viwL~~Gl~~DdtdgHiD~~arfv~p----------~~vl~~~~~d~~d~~ 242 (355)
T 1xkn_A 184 LGKAEIEAQLRRYL----GIEKVLWLGDGIAGDDTDGHVDDMARFVNE----------NTVVIAVEEDPEDEN 242 (355)
T ss_dssp CCHHHHHHHHHHHH----CCSEEEEECCCCTTCTTSSCGGGTEEEEET----------TEEEEECCCCTTSTT
T ss_pred CCHHHHHHHHHHHc----CCcEEEEeCCccCCCCCCcchhheeEeeCC----------CEEEEEcCCCCCCcc
Confidence 36777777888888 333334554 2468999999999999 999999998888886
No 10
>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.60A {Porphyromonas gingivalis} SCOP: d.126.1.6
Probab=26.02 E-value=56 Score=31.90 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHhhccceeeeeecCC------CCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 40 FAKLALKCLFDDYFEEARHFSTRIMLKPI------DDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~~rimLkP~------dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
.+|-++...+.+|| .+.--|-|.-- .|-|||-+|+.-.| |.++.-|..|.+||+
T Consensus 174 ls~~eie~~L~~~L----Gv~kviWL~~G~l~~DdTdgHiD~larFv~p----------~~vl~~~~~d~~d~~ 233 (349)
T 1zbr_A 174 LSRTAIIDTLKESL----GVSRVLSLRHGALAGDDTDGHIDTLARFVDT----------RTIVYVRSEDPSDEH 233 (349)
T ss_dssp SCHHHHHHHHHHHS----CCSEEEEESSCCCTTCCSSSCGGGSEEEEET----------TEEEEEECCCTTSTT
T ss_pred CCHHHHHHHHHHHh----CCcEEEEecCCccCCCCcCcchhheEEecCC----------CEEEEEcCCCCCCcc
Confidence 46778888888888 33333566522 47899999999999 999999999999998
No 11
>2vf1_A Capsid protein; dsRNA virus structure, viral protein, triacontahedron; 3.40A {Rabbit picobirnavirus}
Probab=24.49 E-value=33 Score=35.35 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=55.1
Q ss_pred eeccccccc-eeEE-eeecCCCccceeeeeeccccceeEEEEEEeeecccCcceeeeEEEeccCccccccccCCceEEec
Q 014496 303 VAASWQANK-NFLL-KGKVGPLSSSVAMAFKSWWKPSFTFSISATKDRVVGKTSYGFGIRVENLREASYQRADPNFVMLT 380 (423)
Q Consensus 303 ~aASWQaNK-NfLl-KgK~G~~~ss~alafksWw~PSfTfs~sA~~D~~~g~~~yGFgi~VEnlr~~sYqRadpn~vmlt 380 (423)
-+..||+.. |.-+ ||.+ --|+|+||.+-|-..||..|.-+.-.|=+|- =.
T Consensus 311 ~g~~w~~~~~n~~~~~g~v------------~~~~pt~~~~~~d~~~h~~~~~~~~~~~~vl----------------n~ 362 (525)
T 2vf1_A 311 AGLAWTLDSCNVTQSKGQV------------LLWQPTGTITSSDNTEHIAGDIAVALGDRVL----------------NS 362 (525)
T ss_dssp TTEEECCBCCSBEECTTSC------------EEBCCEEEEEESSSTTCCTTCCEEEESSEEE----------------EE
T ss_pred CCceeEeecCCccccCCeE------------EEEecCCceecCCCchhhhhhHHHHhhhhhh----------------cC
Confidence 466788776 5543 3321 2499999999999999998876665554444 45
Q ss_pred CCchhhhhhhHHhhCCCccccccCc
Q 014496 381 PSKEHLAEGMVWKTGRRPMLQSDVN 405 (423)
Q Consensus 381 p~kehLa~g~~~~~GKrpm~Q~dv~ 405 (423)
|-.||-++.|+.-+----|+|-|--
T Consensus 363 ~~~~~~~~~v~e~trl~~~~~~~ka 387 (525)
T 2vf1_A 363 HIMEPQYSDVLEWTRLMATIEFDKA 387 (525)
T ss_dssp SSSSCCHHHHHHHHTTCCEEEESSS
T ss_pred ccccccHHHHHHHHHHHHHheeccc
Confidence 7788999999999888888998743
No 12
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=23.57 E-value=73 Score=31.03 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhhccceeeeeec-C-C----CCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 40 FAKLALKCLFDDYFEEARHFSTRIMLK-P-I----DDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~~rimLk-P-~----dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
..|-++...+.+||- +.-=|-|. . + -|-|||-+|+.-.| |.+++-|..|.+|||
T Consensus 168 lsk~eiE~~L~~~LG----v~kviWL~~G~l~~DdTdgHID~larFv~p----------~~v~~~~~~d~~d~~ 227 (330)
T 3hvm_A 168 LNQNGIETMLKKELG----AKQVLWYSYGYLKGDDTDSHTDTLARFLDK----------DTIVYSACEDKNDEH 227 (330)
T ss_dssp SCHHHHHHHHHHHHC----CSEEEEECCCCCTTCCSSCCGGGTEEEEET----------TEEEEEECCCTTSTT
T ss_pred CCHHHHHHHHHHHhC----CCEEEEECCCCcCCCCCCccchheeEecCC----------CEEEEEcCCCCCCcc
Confidence 467788888888882 32235555 2 3 37899999999999 999999999999998
No 13
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=21.11 E-value=77 Score=31.49 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHhhccceeeeeec-----CCCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 40 FAKLALKCLFDDYFEEARHFSTRIMLK-----PIDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 40 FgKlal~~LF~DYF~~a~~~~~rimLk-----P~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
..|-++...+.+|+ ....-|-|. ...|-|||-+|+.-.| |.++.-|..|.+||+
T Consensus 185 lsk~eiE~~Lk~~L----Gv~kvIWL~~Gl~~DdTdgHID~~arFv~p----------~~vl~~~~~d~~dp~ 243 (389)
T 2jer_A 185 LSKEAIEQKLCDYL----NVEKVLWLGDGIDPEETNGHVDDVACFIAP----------GEVACIYTEDQNSPF 243 (389)
T ss_dssp SCHHHHHHHHHHHH----TCSEEEEECCCSCTTTTSSCGGGTEEEEET----------TEEEEECCCCTTSTT
T ss_pred cCHHHHHHHHHHHc----CCCEEEEcCCcCCCCCCCCchhheeEEeCC----------CEEEEEecCCCCCcc
Confidence 35777878888888 333334443 2357899999999999 999999998999987
No 14
>2f1v_A Outer membrane protein W; outer membrane protein beta barrel; 2.70A {Escherichia coli K12} PDB: 2f1t_A
Probab=21.08 E-value=53 Score=28.92 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.3
Q ss_pred cchheeccccccceeEEeeec
Q 014496 299 SSFQVAASWQANKNFLLKGKV 319 (423)
Q Consensus 299 ~~~q~aASWQaNKNfLlKgK~ 319 (423)
..+|+++.|++|+||.|.+.+
T Consensus 134 ~a~~aG~~Y~ltd~~~l~~~~ 154 (197)
T 2f1v_A 134 AAGQVGVDYLINRDWLVNMSV 154 (197)
T ss_dssp EEEEEEEEEECSSSEEEEEEE
T ss_pred EEEEeeEEEEecCCeEEEEEE
Confidence 457999999999999998874
No 15
>3sc0_A Methylmalonic aciduria and homocystinuria type C; mmachc, CBLC, cobalamin, flavin, glutathione, flavin reducta oxidoreductase, maturase; HET: COB; 1.95A {Homo sapiens} PDB: 3sbz_A 3sby_A
Probab=20.98 E-value=20 Score=34.16 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=33.8
Q ss_pred CeeEEEEec-cccCCCC------CcccccceEEEEeecC-CCCCceeeeeeccCCceEEEeeccccCCcc
Q 014496 72 HVDMIATVS-GPLDHKP------EENIVGNALFRWQREL-DDPHTFMDLFVSNSDPVLRIRSSTYYPKWG 133 (423)
Q Consensus 72 hVDl~Atvs-~~~d~~~------~~~~~G~alfRwQ~d~-~dPhTF~Dl~vSt~~p~l~~Rsc~y~Pkyg 133 (423)
+||++..-. +| .++| ...+.|-|-+-=+.|+ +|||. . -++=+.-+||+||
T Consensus 101 ~v~v~~Dye~~P-~rrPkvl~QtaaHVSGaAyyyq~~dv~~~p~~--------~---~k~~gvciHP~yG 158 (241)
T 3sc0_A 101 QIEIIADYEVHP-NRRPKILAQTAAHVAGAAYYYQRQDVEADPWG--------N---QRISGVCIHPRFG 158 (241)
T ss_dssp CCEEEETTCBCT-TSCBSSCHHHHHHHTTSSEEECGGGSTTCSCC--------S---SCCCCEEEBTTTB
T ss_pred ceEEEEecccCC-CCcccchHHHHHhhhcceeeccccccccCCcc--------c---cceeeEEecCCcC
Confidence 899998865 44 4554 4668898855444566 78886 1 1344667899998
No 16
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=20.02 E-value=69 Score=31.60 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhhccceeeeeec-C----CCCCCeeEEEEeccccCCCCCcccccceEEEEeecCCCCC
Q 014496 41 AKLALKCLFDDYFEEARHFSTRIMLK-P----IDDPHVDMIATVSGPLDHKPEENIVGNALFRWQRELDDPH 107 (423)
Q Consensus 41 gKlal~~LF~DYF~~a~~~~~rimLk-P----~dDPhVDl~Atvs~~~d~~~~~~~~G~alfRwQ~d~~dPh 107 (423)
.|-++...+.+|+ ....-|-|. . ..|-|||-+|+.-.| |.++.-|..|.+||+
T Consensus 190 sk~eie~~Lk~~L----G~~kvIWL~~gl~~DdTdgHiD~~arfv~p----------~~vl~~~~~d~~dp~ 247 (377)
T 2ewo_A 190 TKEDIEDKLKDYL----NCVKVLWVKDGIDPYETNGHIDDVACFIRP----------GEVACIYTDDKEHPF 247 (377)
T ss_dssp CHHHHHHHHHHHH----CCSEEEEECCCSCTTTTSSCSTTTEEEEET----------TEEEEBCCCCTTSTT
T ss_pred CHHHHHHHHHHHc----CCCEEEEcCCccCCCCCCCchhheeEEeCC----------CEEEEEecCCCCCcc
Confidence 5677777788887 333334454 1 357899999999999 999999998888886
Done!