Query 014497
Match_columns 423
No_of_seqs 116 out of 312
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.7 7.2E-05 2.5E-09 73.6 8.1 109 305-419 47-156 (332)
2 3zux_A Transporter, ASBTNM; tr 94.5 0.12 4.2E-06 50.3 9.1 137 16-164 174-311 (332)
3 4f4l_A ION transport protein; 18.7 1.8E+02 0.0061 22.9 5.2 50 113-165 36-90 (112)
4 1zcd_A Na(+)/H(+) antiporter 1 11.4 93 0.0032 30.6 1.9 93 36-130 248-351 (388)
5 1q90_G Cytochrome B6F complex 11.0 1.1E+02 0.0038 19.4 1.4 10 270-279 6-15 (37)
6 2nwl_A GLTPH, glutamate sympor 9.4 5.4E+02 0.019 25.2 6.8 62 40-101 43-111 (422)
7 1wrg_A LH-1, light-harvesting 8.6 4.4E+02 0.015 18.2 4.0 37 63-99 10-46 (55)
8 1vf5_G Protein PET G; photosyn 5.0 1.4E+02 0.0047 19.0 -0.2 10 270-279 6-15 (37)
9 2zjs_E Preprotein translocase 4.9 6.4E+02 0.022 17.3 3.3 20 402-421 28-47 (60)
10 4ev6_A Magnesium transport pro 4.9 9E+02 0.031 22.4 5.5 60 295-360 278-339 (339)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.69 E-value=7.2e-05 Score=73.58 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=89.9
Q ss_pred ccchhhhhhhccccccccccCC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCchhhhHHhhccCCchHHHHH
Q 014497 305 GTIPCITLILGGNLIQGLRSST-LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG 383 (423)
Q Consensus 305 a~vPl~llVLGa~La~~~~~s~-~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~~~Dpv~~fv~~L~~~~PpA~~l~ 383 (423)
..+.++++..|+++....-++. .++|.+....+.+++++|+++..+.+.. +.||.+...+++..|+|++.+..
T Consensus 47 ~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~ 120 (332)
T 3zux_A 47 WLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASN 120 (332)
T ss_dssp HHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHH
Confidence 4678999999999975322221 2456667778999999999999887653 67999999999999999999999
Q ss_pred HHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014497 384 TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 419 (423)
Q Consensus 384 ~itq~~~~~e~e~s~~l~~~y~~~~itl~~~~~~~l 419 (423)
.+|++.+-+.+........+.+++++++|+|+.+++
T Consensus 121 v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 121 VMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999877767777888999999999999998875
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.45 E-value=0.12 Score=50.33 Aligned_cols=137 Identities=17% Similarity=0.170 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHhhhhhhHHhHHhHHHHHHHhhhccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014497 16 QVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIVV 94 (423)
Q Consensus 16 kV~li~~~G~~la~~~~gil~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~~l~~l-w~ipv~~ll~~~~g~~~g~l~~ 94 (423)
.+++-...|.++.+...+. .++.+|.+..+....++ ..++.-++.+ .+.+.+. +.+-+..++...+++++||.++
T Consensus 174 ~vllP~~lG~l~r~~~~~~-~~~~~~~l~~~s~~~il-liv~~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK-TEKLTDALPLVSVAAIV-LIIGAVVGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG-GHHHHTTHHHHHHHHHH-HHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HHhHHHHHhh--hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788898875321111 23333333333321111 1122222222 3333322 2233335667788999999999
Q ss_pred HhccCCCCCcceeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhhhHHhhhhc
Q 014497 95 KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (423)
Q Consensus 95 ~~~~~p~~~r~~~~~a~~f~N~~~LPl~li~sL~~~~~~~fg~~~~~~~rg~aYi~~~~~~~~~~~ws~g 164 (423)
|.+|.+++.|.-+...|+-.|+ .+-+++..+. |+++....--...|-..-...+.++.+-|.
T Consensus 250 r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 250 KWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777777889998 4777766665 643222222334455555555555555443
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=18.69 E-value=1.8e+02 Score=22.87 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=28.3
Q ss_pred cCCcchhHHHHHHHHhhcCCCCCCC-----hhhhhhhhhHHHHHHhhhhhHHhhhhcc
Q 014497 113 SGNLGNLLLIIVPAICHEQGSPFGN-----RDVCSSVGLSYASFSMALGGFFIWSYSY 165 (423)
Q Consensus 113 f~N~~~LPl~li~sL~~~~~~~fg~-----~~~~~~rg~aYi~~~~~~~~~~~ws~g~ 165 (423)
|.|.++==+.+.+-++.++ |.+ ..+....+..|+..|..+++.+.-..-.
T Consensus 36 F~~~~~s~ltLF~i~T~e~---W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfi 90 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLES---WSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFI 90 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTT---CCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHccc---cHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665555555556664432 321 1112224567888888888887766533
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=11.44 E-value=93 Score=30.57 Aligned_cols=93 Identities=15% Similarity=0.283 Sum_probs=57.7
Q ss_pred ChhHHhhhhhhHHhHHhHHHHHHHhhhccchh---hHHHHHHHHHHHHHHHHH----H-HHHHHHHHHhc--cCCCCCcc
Q 014497 36 TADARRSLNKMVFTVFTPSLMFASLAKTVTLE---EIISWWFMPVNVAMTFLI----G-GILGWIVVKLL--RPKPHLEG 105 (423)
Q Consensus 36 ~~~~~k~lS~l~~~~flP~Lifs~l~~~lt~~---~l~~lw~ipv~~ll~~~~----g-~~~g~l~~~~~--~~p~~~r~ 105 (423)
.++-.+.+...+..+++|-.-|.+.+-+++.+ .+.+- +++...+...+ | ++.+|+..|+- ++|+..++
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~--~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~ 325 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSI--LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTY 325 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHH--SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCH
Confidence 46678888999999999999999999999774 44331 11111111122 2 23355555543 66765332
Q ss_pred -eeEEEeecCCcchhHHHHHHHHhhc
Q 014497 106 -LVIATCASGNLGNLLLIIVPAICHE 130 (423)
Q Consensus 106 -~~~~a~~f~N~~~LPl~li~sL~~~ 130 (423)
.....++-.|++-..=.++..+.-+
T Consensus 326 ~~~~~vg~L~gigftmsL~Ia~laf~ 351 (388)
T 1zcd_A 326 QQIMVVGILCGIGFTMSIFIASLAFG 351 (388)
T ss_dssp GGGTTHHHHTTCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcc
Confidence 3455556678887666677777643
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=10.97 E-value=1.1e+02 Score=19.41 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=6.5
Q ss_pred HHHHHHhchH
Q 014497 270 IVGFIFGAVV 279 (423)
Q Consensus 270 i~giivglip 279 (423)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1q90_G 6 LCGIVLGLVP 15 (37)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566666666
No 6
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=9.44 E-value=5.4e+02 Score=25.22 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=45.2
Q ss_pred HhhhhhhH---HhHHhHHHHHHHhhhccc---hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014497 40 RRSLNKMV---FTVFTPSLMFASLAKTVT---LEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKP 101 (423)
Q Consensus 40 ~k~lS~l~---~~~flP~Lifs~l~~~lt---~~~l~~l-w~ipv~~ll~~~~g~~~g~l~~~~~~~p~ 101 (423)
-+.++++- +....|-|+|..+...+. .+++.++ +-...++++.+.++..+|.++..++++-.
T Consensus 43 ~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~ 111 (422)
T 2nwl_A 43 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 111 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34445553 346778899999988874 3566554 45666778888899999999999988754
No 7
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=8.61 E-value=4.4e+02 Score=18.22 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 014497 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (423)
Q Consensus 63 ~lt~~~l~~lw~ipv~~ll~~~~g~~~g~l~~~~~~~ 99 (423)
-+|.++-+|++-+-+.....+..-.+++-++....|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999988877777776666777777776664
No 8
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=4.99 E-value=1.4e+02 Score=18.99 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=4.7
Q ss_pred HHHHHHhchH
Q 014497 270 IVGFIFGAVV 279 (423)
Q Consensus 270 i~giivglip 279 (423)
+.|+++|+||
T Consensus 6 L~GIVlGlip 15 (37)
T 1vf5_G 6 LDGLVLGLVF 15 (37)
T ss_dssp ---CHHHHHH
T ss_pred hhhHHHhhHH
Confidence 4566666666
No 9
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=4.88 E-value=6.4e+02 Score=17.25 Aligned_cols=20 Identities=25% Similarity=-0.044 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014497 402 WTYLVAALALTGWSMVYMWI 421 (423)
Q Consensus 402 ~~y~~~~itl~~~~~~~l~~ 421 (423)
++|...++...+.++.|+|+
T Consensus 28 ~~~t~vViv~v~i~~~~~~~ 47 (60)
T 2zjs_E 28 VEGTQAILLFTLAFMVILGL 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777775
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=4.85 E-value=9e+02 Score=22.42 Aligned_cols=60 Identities=13% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHhcCccchhhhh--hhccccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014497 295 IQDSIEILGDGTIPCITL--ILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFL 360 (423)
Q Consensus 295 i~~a~~~lG~a~vPl~ll--VLGa~La~~~~~s~~~~~~iv~iv~~Rlii~P~igi~iv~~~~~~~~~ 360 (423)
++.-+..++..+.|++++ +-|.|+...|. ..++--+.++ +.++=+++++.++.+.|.||+
T Consensus 278 ~mk~LTiit~IflP~T~IaGiyGMNf~~mPe---l~~~~gy~~~---l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 278 IMKILTMVTTIFAVPMWITGIYGMNFSYLPL---ANNPQGFWLV---MALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHTTCCCSCCTT---SSCTTHHHHH---HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCCCCC---ccCchHHHHH---HHHHHHHHHHHHHHHHHcCCC
Done!