Query 014498
Match_columns 423
No_of_seqs 217 out of 1761
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 2.5E-52 8.5E-57 413.9 26.9 287 42-420 25-339 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 3E-52 1E-56 419.6 26.1 327 43-420 8-385 (396)
3 2qq8_A TBC1 domain family memb 100.0 1E-49 3.4E-54 393.2 24.8 286 42-414 20-309 (334)
4 3qye_A TBC1 domain family memb 100.0 3.1E-48 1.1E-52 382.4 20.9 269 42-414 29-308 (331)
5 4hl4_A TBC1 domain family memb 100.0 2.1E-47 7.2E-52 370.0 20.2 263 44-418 21-290 (292)
6 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1.4E-47 4.8E-52 374.4 18.5 258 43-413 5-274 (310)
7 3qwl_A TBC1 domain family memb 100.0 2.8E-40 9.6E-45 318.2 23.9 252 45-420 28-289 (294)
8 4g26_A Pentatricopeptide repea 29.1 2.3E+02 0.0078 28.1 9.7 48 273-320 127-174 (501)
9 2kvs_A Uncharacterized protein 29.1 40 0.0014 24.9 2.9 36 383-418 38-73 (80)
10 1dxs_A P53-like transcription 18.0 99 0.0034 22.7 3.1 24 62-85 41-64 (80)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.5e-52 Score=413.88 Aligned_cols=287 Identities=22% Similarity=0.424 Sum_probs=247.8
Q ss_pred CHHHHHHhhccCCCccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 014498 42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (423)
Q Consensus 42 ~~~~W~~~l~~~~~i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~ 121 (423)
..++|.+++.+. .+|.++ ++.++++|||+.+|+.||++|||++|.+. ++|..++.++++.|.++++++.....
T Consensus 25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~--- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN--- 97 (345)
T ss_dssp HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 457899999764 478887 56667899999999999999999998875 56778888999999999998642100
Q ss_pred CCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChhhHHHHHHHHHHH
Q 014498 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 201 (423)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~~y 201 (423)
+ + ...+..++|++||.||+|+ ++|+.+..++.|.|||.+|
T Consensus 98 ------------------~------~---------------~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y 137 (345)
T 2qfz_A 98 ------------------D------E---------------VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW 137 (345)
T ss_dssp ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred ------------------c------c---------------chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence 0 0 0014578999999999999 9999999999999999999
Q ss_pred HHhcCCCcccCChhhHHHHHHHhcC------------------------CHHHHHHHHHHHHHHhhhcccCCCChhhHHH
Q 014498 202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS 257 (423)
Q Consensus 202 ~~~np~igY~QGm~~iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~ 257 (423)
+.+||++|||||||+||++|++++. +|++|||||+.+|+++.++|. .+.+|+..
T Consensus 138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~ 215 (345)
T 2qfz_A 138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM 215 (345)
T ss_dssp HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence 9999999999999999999998874 289999999999999877765 34679999
Q ss_pred HHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCccc
Q 014498 258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQV 337 (423)
Q Consensus 258 ~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~ 337 (423)
.+..++.+|+.++|+||+||.+.++++.+|+++||+|+|++++|+++++||||.+|++|...
T Consensus 216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~------------------ 277 (345)
T 2qfz_A 216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF------------------ 277 (345)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh------------------
Confidence 99999999999999999999999999999999999999999999999999999999987542
Q ss_pred chhHhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC----CHHHHHHHHHHH
Q 014498 338 NDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL----DAKKACNEALKI 413 (423)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~----d~~~~l~~A~~l 413 (423)
..|++|+|+|+|...|++||. +.++++++.++++++... |++.+++.|..+
T Consensus 278 ------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l 332 (345)
T 2qfz_A 278 ------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332 (345)
T ss_dssp ------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence 126889999999999999998 479999999999999653 899999999999
Q ss_pred HHHHHhh
Q 014498 414 QKKYLSK 420 (423)
Q Consensus 414 ~~~~~~~ 420 (423)
..+|...
T Consensus 333 ~~~~~~~ 339 (345)
T 2qfz_A 333 KFAFADA 339 (345)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9988653
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=3e-52 Score=419.64 Aligned_cols=327 Identities=23% Similarity=0.381 Sum_probs=251.6
Q ss_pred HHHHHHhhccCCCccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 014498 43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122 (423)
Q Consensus 43 ~~~W~~~l~~~~~i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~~ 122 (423)
.++|.+++.+.+.+|.++ ++.++++|||+.+|+.||++|||++|.+. ++|..++.++++.|.++++++..-.
T Consensus 8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~----- 79 (396)
T 1fkm_A 8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ----- 79 (396)
T ss_dssp HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhcc-----
Confidence 468999998876589888 66677899999999999999999999876 4677888999999999999864200
Q ss_pred CcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChhhHHHHHHHHHHHH
Q 014498 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS 202 (423)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~~y~ 202 (423)
++ .+ .+..+||++||.||+|++++|+.+.+++.|+|||.+|+
T Consensus 80 -----------------~~---------------~~------~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya 121 (396)
T 1fkm_A 80 -----------------HS---------------RD------IPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 121 (396)
T ss_dssp -----------------CS---------------TH------HHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred -----------------Cc---------------cc------HHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHH
Confidence 00 01 14578999999999999999999999999999999999
Q ss_pred HhcCCCcccCChhhHHHHHHHhcC---------------------C-------HHHHHHHHHHHHHHhhhcccCCCChhh
Q 014498 203 WVDNDIGYVQGMNDICSPMIVLLE---------------------N-------EADAFWCFEHTMRRLRENFRTNTGMIG 254 (423)
Q Consensus 203 ~~np~igY~QGm~~iaa~ll~~~~---------------------~-------E~~aF~~f~~l~~~~~~~~~~~~~~~~ 254 (423)
.+||++|||||||+|+++|++++. + |++|||||++||+++..+|.. +.++
T Consensus 122 ~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~ 199 (396)
T 1fkm_A 122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPG 199 (396)
T ss_dssp HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHH
T ss_pred HHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHH
Confidence 999999999999999999998752 1 999999999999998877753 4679
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCC
Q 014498 255 VQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDG 334 (423)
Q Consensus 255 ~~~~~~~~~~lL~~~dP~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~ 334 (423)
+...+..++.+|+.+||+||+||.+.++++.+|+++||+|||+++||++.++||||.+|++|.....++ +...++..++
T Consensus 200 i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~-~~~~~~~~~~ 278 (396)
T 1fkm_A 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSS-YSMSSNDIKP 278 (396)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccch-hhhhcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999882111000 1111111111
Q ss_pred cccchhH---hhhhc-----------hhhhhhhhcCCCC-----CCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 014498 335 RQVNDKQ---LKQCG-----------KFERKNVKTGLPD-----KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA 395 (423)
Q Consensus 335 ~~~~~~~---~~~~~-----------~~~~~~~~~~~~~-----~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~ 395 (423)
|..+.+. ..+.| +-..++++.+++. +...|++|+|+|+|...|++||+ .|+++++++|+
T Consensus 279 p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~ 356 (396)
T 1fkm_A 279 PVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQ 356 (396)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHT
T ss_pred CccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHh
Confidence 1111110 00100 0001111111000 11478999999999999999998 69999999999
Q ss_pred hhcCC----CCHHHHHHHHHHHHHHHHhh
Q 014498 396 DITGN----LDAKKACNEALKIQKKYLSK 420 (423)
Q Consensus 396 ~l~~~----~d~~~~l~~A~~l~~~~~~~ 420 (423)
++|.. .|++.++++|..++..|...
T Consensus 357 ~~p~~~~~~~di~~ll~~A~~l~~~~~~~ 385 (396)
T 1fkm_A 357 NPPTKDWTETDIEMLLSEAFIWQSLYKDA 385 (396)
T ss_dssp SCSCTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 99964 58999999999999988654
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-49 Score=393.19 Aligned_cols=286 Identities=19% Similarity=0.297 Sum_probs=228.6
Q ss_pred CHHHHH-HhhccCCC-ccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014498 42 SARRWH-AAFSEDGH-LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (423)
Q Consensus 42 ~~~~W~-~~l~~~~~-i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~ 119 (423)
...+|. +++.+.+. .+.++ ++.++++|||+.+|+.||++++|+.. ..+.+.+....++.++.|.++.......
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~--- 94 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEV--- 94 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccC---
Confidence 346898 57776544 35555 77788999999999999999999853 4555566666666666666554332100
Q ss_pred cCCCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCCh-hhHHHHHHHH
Q 014498 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVL 198 (423)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~-~~~~~L~rIL 198 (423)
...+.|... ....+..+||++||.||+|++++|+.+ .+++.|+|||
T Consensus 95 ----------------~~~d~~~~~-----------------~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL 141 (334)
T 2qq8_A 95 ----------------ENEDAGFSA-----------------ADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSIL 141 (334)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHH
T ss_pred ----------------ccccccccc-----------------ccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHH
Confidence 000001000 000135789999999999999999875 5799999999
Q ss_pred HHHHHhcCCCcccCChhhHHHHHHHhcCCHHHHHHHHHHHHHHhhh-cccCCCChhhHHHHHHHHHHHHHHHCHHHHHHH
Q 014498 199 AIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRE-NFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (423)
Q Consensus 199 ~~y~~~np~igY~QGm~~iaa~ll~~~~~E~~aF~~f~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lL~~~dP~L~~hL 277 (423)
.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++... .|+ ..+..++...+..++.+|+..+|+||+||
T Consensus 142 ~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~L~~hL 219 (334)
T 2qq8_A 142 GAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFF-RVDHGLMLTYFAAFEVFFEENLPKLFAHF 219 (334)
T ss_dssp HHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHH-SSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhcc-CCChHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 999999999999999999999999888 899999999999987532 233 34456889999999999999999999999
Q ss_pred HhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCcccchhHhhhhchhhhhhhhcCC
Q 014498 278 EDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGL 357 (423)
Q Consensus 278 ~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (423)
.+.++++.+|+++||+|+|++++|++.++||||++|++|.
T Consensus 220 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---------------------------------------- 259 (334)
T 2qq8_A 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---------------------------------------- 259 (334)
T ss_dssp HHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH----------------------------------------
T ss_pred HHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC----------------------------------------
Confidence 9999999999999999999999999999999999999863
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 014498 358 PDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQ 414 (423)
Q Consensus 358 ~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~d~~~~l~~A~~l~ 414 (423)
.+++++|+|+|...++.|++ .++++++.+++++|..+|++.+++.|..+.
T Consensus 260 -----~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 260 -----EFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp -----HHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 36889999999999999998 489999999999999999999999998865
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=3.1e-48 Score=382.41 Aligned_cols=269 Identities=22% Similarity=0.429 Sum_probs=223.6
Q ss_pred CHHHHHHhhccCCC----ccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014498 42 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 117 (423)
Q Consensus 42 ~~~~W~~~l~~~~~----i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~ 117 (423)
+.++|++++.+.++ .+.++ ++.++++|||+.+|+.||++|+|+.+...+.. +.....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~---~~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFP---SKQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCC---SSSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcch---hhhhhchHHHHHHHHhcC---
Confidence 45789999987664 36777 66666789999999999999999743111000 000112345555433210
Q ss_pred cccCCCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCCh--hhHHHHH
Q 014498 118 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLW 195 (423)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~ 195 (423)
...++|++||.||+|++++|..+ .+++.|+
T Consensus 102 ------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 133 (331)
T 3qye_A 102 ------------------------------------------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLY 133 (331)
T ss_dssp ------------------------------------------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHH
T ss_pred ------------------------------------------------CchhHHHHhhcccCCCchhhcCCCcccHHHHH
Confidence 12478999999999999999886 7899999
Q ss_pred HHHHHHHHhcCCCcccCChhhHHHHHHHhcCCHHHHHHHHHHHHHHh--hhcccCCCChhhHHHHHHHHHHHHHHHCHHH
Q 014498 196 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (423)
Q Consensus 196 rIL~~y~~~np~igY~QGm~~iaa~ll~~~~~E~~aF~~f~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lL~~~dP~L 273 (423)
|||.+|+.+||++|||||||+||++|++++ +|++|||||+.+|+.. +..|. +++.++...+..+..+|+.++|+|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~~p~L 210 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYR--PDMIILQIQMYQLSRLLHDYHRDL 210 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGS--TTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 8999999999999874 44443 567799999999999999999999
Q ss_pred HHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCcccchhHhhhhchhhhhhh
Q 014498 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNV 353 (423)
Q Consensus 274 ~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (423)
|+||.+.++++.+|+++||+|+|++++|++.++||||++|++|..
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~----------------------------------- 255 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE----------------------------------- 255 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT-----------------------------------
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH-----------------------------------
Confidence 999999999999999999999999999999999999999998743
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC---CHHHHHHHHHHHH
Q 014498 354 KTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL---DAKKACNEALKIQ 414 (423)
Q Consensus 354 ~~~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~---d~~~~l~~A~~l~ 414 (423)
+++++|+|+|..+|+.||++ .++++++.++++....+ |++.++++|..+.
T Consensus 256 ----------~l~~valaiL~~~~~~ll~~-~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 256 ----------VIFKVALSLLGSHKPLILQH-ENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp ----------HHHHHHHHHHHHTHHHHHTC-CSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 68999999999999999984 69999999999855456 7899999997664
No 5
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.1e-47 Score=369.96 Aligned_cols=263 Identities=21% Similarity=0.276 Sum_probs=221.3
Q ss_pred HHHHHhhccCCCccHHHHHHHHHhC-C-CCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 014498 44 RRWHAAFSEDGHLDIAKVLRRIQRG-G-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (423)
Q Consensus 44 ~~W~~~l~~~~~i~~~kll~~l~~~-G-IP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~ 121 (423)
+++++++.+ +.+|++++++.+..+ | +|+.+|+.||+.|+|+.+...+. .|....
T Consensus 21 ~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~----------- 76 (292)
T 4hl4_A 21 AEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNL----------- 76 (292)
T ss_dssp HHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTH-----------
T ss_pred HHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhh-----------
Confidence 467777754 568999866555543 3 68899999999999997765421 111000
Q ss_pred CCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCCh----hhHHHHHHH
Q 014498 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE----TNQAKLWDV 197 (423)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~----~~~~~L~rI 197 (423)
....+..+||++||.||+|+++.|..+ ..++.|.||
T Consensus 77 ----------------------------------------~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~i 116 (292)
T 4hl4_A 77 ----------------------------------------RQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDI 116 (292)
T ss_dssp ----------------------------------------HHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------cccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHH
Confidence 000134689999999999999988653 467899999
Q ss_pred HHHHHHhcCCCcccCChhhHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHHCHHHHHHH
Q 014498 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (423)
Q Consensus 198 L~~y~~~np~igY~QGm~~iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~dP~L~~hL 277 (423)
|.+|+.+||++|||||||+||++|++++ +|++|||||+++|+...+.|+ .+++.++...+..++.+|+..+|+||+||
T Consensus 117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~hL 194 (292)
T 4hl4_A 117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDFM 194 (292)
T ss_dssp HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999999999999999999999999888 899999999999998655554 45667888999999999999999999999
Q ss_pred HhCCCCccchHHHHHHHhhcccCC-hhhHHHHHHHHhccccCCCchhhhcccCCCCCCcccchhHhhhhchhhhhhhhcC
Q 014498 278 EDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTG 356 (423)
Q Consensus 278 ~~~~i~~~~f~~~W~~tlF~~~l~-~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (423)
.+.++ +.+|+++||+|+|++++| ++.++||||+++++|..
T Consensus 195 ~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~-------------------------------------- 235 (292)
T 4hl4_A 195 QSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL-------------------------------------- 235 (292)
T ss_dssp C-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT--------------------------------------
T ss_pred HHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc--------------------------------------
Confidence 99999 469999999999999995 99999999999998743
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 014498 357 LPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYL 418 (423)
Q Consensus 357 ~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~d~~~~l~~A~~l~~~~~ 418 (423)
+++|+|+|++...|++||++..++++++.+++++|..+|++.++++|..++++|.
T Consensus 236 -------~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 236 -------MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp -------HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCC
Confidence 6899999999999999999767899999999999999999999999999999985
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-47 Score=374.39 Aligned_cols=258 Identities=21% Similarity=0.394 Sum_probs=219.2
Q ss_pred HHHHHHhhccCCCc---cHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014498 43 ARRWHAAFSEDGHL---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (423)
Q Consensus 43 ~~~W~~~l~~~~~i---~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~ 119 (423)
.++|.+++++.+.. +.++ ++.++++|||+.+|+.||+.|+|+.+. ....+.|..+.+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 46788888764322 3344 677778899999999999999998653 12335676553220
Q ss_pred cCCCcccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCCh--hhHHHHHHH
Q 014498 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 197 (423)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~--~~~~~L~rI 197 (423)
. ...++|++||.||+|++++|..+ .+++.|+||
T Consensus 67 --------------------~-------------------------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~I 101 (310)
T 3hzj_A 67 --------------------S-------------------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKI 101 (310)
T ss_dssp --------------------C-------------------------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHH
T ss_pred --------------------C-------------------------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHH
Confidence 0 12578999999999999999876 689999999
Q ss_pred HHHHHHhcCCCcccCChhhHHHHHHHhcCCHHHHHHHHHHHHHH--hhhcccCCCChhhHHHHHHHHHHHHHHHCHHHHH
Q 014498 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275 (423)
Q Consensus 198 L~~y~~~np~igY~QGm~~iaa~ll~~~~~E~~aF~~f~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~lL~~~dP~L~~ 275 (423)
|.+|+.+||++|||||||+||++|++++ +|++|||||+++|.. ++..| .++++++...+..++.+|+.++|+||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~ll~~~~p~L~~ 178 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLY--RNNFEDLHCKFYQLERLMQEQLPDLHS 178 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGT--HHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccc--cccHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999999 899999999999987 34444 356778999999999999999999999
Q ss_pred HHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCcccchhHhhhhchhhhhhhhc
Q 014498 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKT 355 (423)
Q Consensus 276 hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (423)
||.+.|+++.+|+++||+|+|++++|++.++||||+++++|..
T Consensus 179 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~------------------------------------- 221 (310)
T 3hzj_A 179 HFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLN------------------------------------- 221 (310)
T ss_dssp HHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTT-------------------------------------
T ss_pred HHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcH-------------------------------------
Confidence 9999999999999999999999999999999999999998743
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHh-hhcCC----CCHHHHHHHHHHH
Q 014498 356 GLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA-DITGN----LDAKKACNEALKI 413 (423)
Q Consensus 356 ~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~-~l~~~----~d~~~~l~~A~~l 413 (423)
+++++|+|+|...|++|++ .++++++.+++ ++|.. .|++.+++.|..+
T Consensus 222 --------~l~~v~lail~~~~~~Ll~--~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 222 --------IIFHVALALLKTSKEDLLQ--ADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp --------HHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 6888999999999999999 38999999996 67744 4899999999877
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=318.24 Aligned_cols=252 Identities=17% Similarity=0.234 Sum_probs=205.6
Q ss_pred HHHHhhccCCCccHHHHHHHHHhCCCCCCChHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCc
Q 014498 45 RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGK 124 (423)
Q Consensus 45 ~W~~~l~~~~~i~~~kll~~l~~~GIP~~~R~~vW~~LLg~~~~~~~~~~~~~i~~~~~~~Y~~l~~~~~~~~~~~~~~~ 124 (423)
..+.++ ++..+|.+++.+.+++||||+.+|+.||++|+|++|.+++ .|..++++++++|++++++...
T Consensus 28 ~~~~ll-~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~--~~~~~l~~kr~eY~~l~~~~~~--------- 95 (294)
T 3qwl_A 28 SLEILL-KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHE--SHAKVMMYRKEQYLDVLHALKV--------- 95 (294)
T ss_dssp HHHHHT-TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGG--GHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHh-cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCch--hHHHHHHHHHHHHHHHHHhhhh---------
Confidence 466665 4577899997777777669999999999999999999884 5889999999999999887421
Q ss_pred ccccccccCCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhccccCCCCCcCCCChhhHHHHHHHHHHHHHh
Q 014498 125 FITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWV 204 (423)
Q Consensus 125 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~Rt~~~~~~f~~~~~~~~L~rIL~~y~~~ 204 (423)
.++|..+.++ ....|..|...
T Consensus 96 -------------------------------------------~r~I~~~tP~----------------~~vfl~~~~~~ 116 (294)
T 3qwl_A 96 -------------------------------------------VRFVSDATPQ----------------AEVYLRMYQLE 116 (294)
T ss_dssp -------------------------------------------TTSCCTTSCH----------------HHHHHHHHHHH
T ss_pred -------------------------------------------hhhhhccCch----------------HHHHHHHHHcc
Confidence 2333331111 11122222211
Q ss_pred ----------cCCCcccCChhhHHHHHHHhcCCHHHHHHHHHHHHHHhhhcccCCCChhhHHHHHHHHHHHHHHHCHHHH
Q 014498 205 ----------DNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLH 274 (423)
Q Consensus 205 ----------np~igY~QGm~~iaa~ll~~~~~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~dP~L~ 274 (423)
+++ .++|||..||+++++++.+|++|||||+++|+++.++|.. +.+|++.. ++.+|+.+||+||
T Consensus 117 ~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~~LL~~~dP~L~ 190 (294)
T 3qwl_A 117 SGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FEQYLNLEDGRLL 190 (294)
T ss_dssp HTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HHHHHHHHCHHHH
T ss_pred cccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HHHHHHHHHHHHH
Confidence 222 2559999999999999999999999999999998877753 46688765 4899999999999
Q ss_pred HHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCCchhhhcccCCCCCCcccchhHhhhhchhhhhhhh
Q 014498 275 QHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVK 354 (423)
Q Consensus 275 ~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (423)
+||.+.++.+.+++.+||+|+|++++|++.++||||++|+++.
T Consensus 191 ~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~------------------------------------- 233 (294)
T 3qwl_A 191 THLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC------------------------------------- 233 (294)
T ss_dssp HHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS-------------------------------------
T ss_pred HHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc-------------------------------------
Confidence 9999999988777779999999999999999999999998542
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhh
Q 014498 355 TGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSK 420 (423)
Q Consensus 355 ~~~~~~~~~~~l~~~~ail~~~r~~il~~~~~~~~il~~l~~l~~~~d~~~~l~~A~~l~~~~~~~ 420 (423)
.|++++|+|+|..+|++||+ ....++++++++++| ..|++.++++|..++++|...
T Consensus 234 --------~~l~~valAiL~~~r~~Ll~-~~~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~~ 289 (294)
T 3qwl_A 234 --------KILVFVAVEILLTFKIKVMA-LNSAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCGT 289 (294)
T ss_dssp --------THHHHHHHHHHHHTHHHHHH-CCSHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHCC
T ss_pred --------hHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCCC
Confidence 37899999999999999998 445699999999999 779999999999999999764
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.13 E-value=2.3e+02 Score=28.10 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=40.0
Q ss_pred HHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhccccCCC
Q 014498 273 LHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPN 320 (423)
Q Consensus 273 L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~~ 320 (423)
+++.+.+.|+.|...++.-++..+++.=.++....+|+.+...|..|+
T Consensus 127 l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 555667788888888888899888888888999999999988887664
No 9
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=29.11 E-value=40 Score=24.91 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=28.4
Q ss_pred hcCChHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 014498 383 EAKGLDDVVKILADITGNLDAKKACNEALKIQKKYL 418 (423)
Q Consensus 383 ~~~~~~~il~~l~~l~~~~d~~~~l~~A~~l~~~~~ 418 (423)
...++++|..++......-.+-+++++|+.+|++-.
T Consensus 38 ~~~d~~eIs~Yle~~~~~~~~~e~vkralsly~~~~ 73 (80)
T 2kvs_A 38 LEERHQVIRAYVMSNYTDHQLIETTNRAISLYMANL 73 (80)
T ss_dssp SCSSSHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999985555567788999999998754
No 10
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=18.03 E-value=99 Score=22.74 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHhCCCCCCChHHHHHHhhCC
Q 014498 62 LRRIQRGGIHPSIKGLVWEFLLGC 85 (423)
Q Consensus 62 l~~l~~~GIP~~~R~~vW~~LLg~ 85 (423)
+..+..-.||...|..+|+-+...
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHh
Confidence 345667789999999999998864
Done!