BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014499
         (423 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis
           thaliana GN=At5g03900 PE=1 SV=2
          Length = 523

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/435 (61%), Positives = 334/435 (76%), Gaps = 18/435 (4%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+      M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG +W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VG-KWFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQL 423
           GFL FV  I+PLLQ+
Sbjct: 415 GFLTFVKNIYPLLQI 429


>sp|Q8FDG5|PRIM_ECOL6 DNA primase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
           / UPEC) GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS7|PRIM_SHIFL DNA primase OS=Shigella flexneri GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS5|PRIM_ECOLI DNA primase OS=Escherichia coli (strain K12) GN=dnaG PE=1 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


>sp|P0ABS6|PRIM_ECO57 DNA primase OS=Escherichia coli O157:H7 GN=dnaG PE=3 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 12  PKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV 55
           P S F F  L P ++L  PD   R+  L  P IS ++PG  + +
Sbjct: 367 PLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS-QVPGETLRI 409


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,958,688
Number of Sequences: 539616
Number of extensions: 6966444
Number of successful extensions: 16972
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 16964
Number of HSP's gapped (non-prelim): 19
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)